Psyllid ID: psy7219

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
VYSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSVPSTAFVVLGCFNLFVGLITTLTVTVLDNLQDDTLEYVNQYLKVIFLIFPHFCLGEGLMKLANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNPHPVPVSLEEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR
Secondary Structure (PSIPRED)
cEEEEHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHcccccccEEEEEccEEEcccccccccccccEEEEEccccEEEcccccccccHHHHHHHHccccccccEEEEEcccccccHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccccEEEEEEEEEEEccccccEEEEccEEEEcccccEEEEEcccccccccHHHHHcccccccccEEEEEcccHHHHHHHcc
Coil and Loop (DISEMBL)
VYSYDLLCYTFSSTLVVFIFLAFKeeayispqnlPGLVALLLCYGcaviplmypcsfifsvpstAFVVLGCFNLFVGLITTLTVTVLDNLQDDTLEYVNQYLKVIFLIFphfclgegLMKLANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFsrcftrsnphpvpvsleeddvRKERERvergadsgdVLVVKRLFKIYAnskdtkpavnqisfgvgrgecfgllglngagkttTFKMLTgaikptsgnayvmnhsirdsmdlvr
Flexible Loop (DISEMBL)
vysydllcYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSVPSTAFVVLGCFNLFVGLITTLTVTVLDNLQDDTLEYVNQYLKVIFLIFPHFCLGEGLMKLANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFTrsnphpvpvsleeddvrkerervergadsgdvlvvKRLFKIyanskdtkpavNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGaikptsgnayvmnhsirdsmdlvr
Low Complexity Region (SEG)
VYSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSVPSTAFVVLGCFNlfvglittltvtvldnlqddtlEYVNQYLKVIFLIFPHFCLGEGLMKLANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNPHPVPVSLeeddvrkererverGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR
Disordered region (IsUnstruct)
*YSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSVPSTAFVVLGCFNLFVGLITTLTVTVLDNLQDDTLEYVNQYLKVIFLIFPHFCLGEGLMKLANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFTR*****************************DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM************
Disordered Region (DISOPRED)
VYSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSVPSTAFVVLGCFNLFVGLITTLTVTVLDNLQDDTLEYVNQYLKVIFLIFPHFCLGEGLMKLANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFTR************DDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR*******
Disordered Region (DISEMBL)
VYSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSVPSTAFVVLGCFNLFVGLITTLTVTVLDNLQDDTLEYVNQYLKVIFLIFPHFCLGEGLMKLANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNPHPVPVSLEE**************DSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR
Disordered Region (DISPRO)
VYSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSVPSTAFVVLGCFNLFVGLITTLTVTVLDNLQDDTLEYVNQYLKVIFLIFPHFCLGEGLMKLANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRS********LEEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
VYSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSVPSTAFVVLGCFNLFVGLITTLTVTVLDNLQDDTLEYVNQYLKVIFLIFPHFCLGEGLMKLANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNPHPVPVSLEEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	288	2.2.26 [Sep-21-2011]
O35600	2310	Retinal-specific ATP-bind	yes	N/A	0.968	0.120	0.461	4e-63
Q91V24	2159	ATP-binding cassette sub-	no	N/A	0.944	0.125	0.460	7e-63
Q7TNJ2	2170	ATP-binding cassette sub-	yes	N/A	0.944	0.125	0.446	2e-61
O95477	2261	ATP-binding cassette sub-	yes	N/A	0.937	0.119	0.426	4e-58
P41233	2261	ATP-binding cassette sub-	no	N/A	0.937	0.119	0.426	6e-58
P78363	2273	Retinal-specific ATP-bind	no	N/A	0.947	0.120	0.453	4e-56
Q8IZY2	2146	ATP-binding cassette sub-	no	N/A	0.951	0.127	0.435	9e-55
Q9BZC7	2435	ATP-binding cassette sub-	no	N/A	0.947	0.112	0.396	5e-50
P41234	2434	ATP-binding cassette sub-	no	N/A	0.947	0.112	0.396	2e-48
Q9ESR9	2434	ATP-binding cassette sub-	no	N/A	0.947	0.112	0.392	3e-48

>sp|O35600|ABCA4_MOUSE Retinal-specific ATP-binding cassette transporter OS=Mus musculus GN=Abca4 PE=2 SV=1

 Score =  241 bits (616), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 133/288 (46%), Positives = 184/288 (63%), Gaps = 9/288 (3%)

Query: 4    YDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSVPS 63
            +D++ Y  S+ LVV IF+ F+++AY SP NLP LV+LL+ YG AVIP+MYP SF+F VPS
Sbjct: 1729 WDIMNYAVSAGLVVGIFIGFQKKAYTSPDNLPALVSLLMLYGWAVIPMMYPASFLFEVPS 1788

Query: 64   TAFVVLGCFNLFVGLITTLTVTVLDNLQDD-TLEYVNQYLKVIFLIFPHFCLGEGLMKLA 122
            TA+V L C NLF+G+ ++    VL+  +++ TL   N  L+ + ++FPHFCLG GL+ LA
Sbjct: 1789 TAYVALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPHFCLGRGLIDLA 1848

Query: 123  NTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFTR- 181
             +   +     +G    A N + W +IGKNL  MA  G +Y  + L I++  F    TR 
Sbjct: 1849 LSQAVTDVYAQFGEEYSA-NPFQWDLIGKNLVAMAIEGVVYFLLTLLIQHHFF---LTRW 1904

Query: 182  -SNPHPVPVSLEEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVG 240
             + P   PV  E+DDV +ER+RV  G +  D+L +  L K+Y+ S  + PAV+++  GV 
Sbjct: 1905 IAEPAREPVFDEDDDVAEERQRVMSGGNKTDILKLNELTKVYSGS--SSPAVDRLCVGVR 1962

Query: 241  RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 288
             GECFGLLG+NGAGKTTTFKMLTG    TSG+A V   SI  S+  V 
Sbjct: 1963 PGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTSISDVH 2010

In the visual cycle, acts as an inward-directed retinoid flipase, retinoid substrates imported by ABCA4 from the extracellular or intradiscal (rod) membrane surfaces to the cytoplasmic membrane surface are all-trans-retinaldehyde (ATR) and N-retinyl-phosphatidyl-ethanolamine (NR-PE). Once transported to the cytoplasmic surface, ATR is reduced to vitamin A by trans-retinol dehydrogenase (tRDH) and then transferred to the retinal pigment epithelium (RPE) where it is converted to 11-cis-retinal. May play a role in photoresponse, removing ATR/NR-PE from the extracellular photoreceptor surfaces during bleach recovery.
Mus musculus (taxid: 10090)

>sp|Q91V24|ABCA7_MOUSE ATP-binding cassette sub-family A member 7 OS=Mus musculus GN=Abca7 PE=1 SV=1

 Score =  240 bits (613), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 128/278 (46%), Positives = 184/278 (66%), Gaps = 6/278 (2%)

Query: 4    YDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSVPS 63
            +D+  Y  +  +VVFIFLAF++ AY++P+NLP L+ LLL YG ++ PLMYP SF FSVPS
Sbjct: 1600 WDMCNYLVAVCIVVFIFLAFQQRAYVAPENLPALLLLLLLYGWSITPLMYPASFFFSVPS 1659

Query: 64   TAFVVLGCFNLFVGLITTLTVTVLDNLQDDTLEYVNQYLKVIFLIFPHFCLGEGLMKLAN 123
            TA+VVL C NLF+G+ +++   VL+ L D  L+ V++ LK +FLIFPHFCLG GL+ +  
Sbjct: 1660 TAYVVLTCINLFIGINSSMATFVLELLSDQNLQEVSRILKQVFLIFPHFCLGRGLIDMVR 1719

Query: 124  TYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSN 183
                +      G +     +  W +IGKNL  M   G L+  I L ++++  +R   +S 
Sbjct: 1720 NQAMADAFERLGDKQFQSPL-RWDIIGKNLLAMMAQGPLFLLITLLLQHR--NRLLPQSK 1776

Query: 184  PHPVPVSLEED-DVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRG 242
            P  +P   EED DV +ERERV +GA  GDVLV++ L K+Y   ++  PAV+++  G+  G
Sbjct: 1777 PRLLPPLGEEDEDVAQERERVTKGATQGDVLVLRDLTKVYRGQRN--PAVDRLCLGIPPG 1834

Query: 243  ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
            ECFGLLG+NGAGKT+TF+M+TG   P+SG A +  H++
Sbjct: 1835 ECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNV 1872

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Mus musculus (taxid: 10090)

>sp|Q7TNJ2|ABCA7_RAT ATP-binding cassette sub-family A member 7 OS=Rattus norvegicus GN=Abca7 PE=1 SV=1

 Score =  236 bits (601), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 124/278 (44%), Positives = 181/278 (65%), Gaps = 6/278 (2%)

Query: 4    YDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSVPS 63
            +D+  Y  +  +VV IFLAF+++AY++P+NLP L+ LLL YG ++ PLMYP SF FSVPS
Sbjct: 1611 WDMCNYLVAVCIVVLIFLAFQQKAYVAPENLPALLLLLLLYGWSITPLMYPASFFFSVPS 1670

Query: 64   TAFVVLGCFNLFVGLITTLTVTVLDNLQDDTLEYVNQYLKVIFLIFPHFCLGEGLMKLAN 123
            TA+VVL C NLF+G+ +++   VL+ L D  L+ V++ LK +FLIFPHFCLG GL+ +  
Sbjct: 1671 TAYVVLTCINLFIGINSSMATFVLELLSDQNLQEVSRILKQVFLIFPHFCLGRGLIDMVR 1730

Query: 124  TYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSN 183
                +      G +     +  W +IGKNL  M   G L+  I L ++++  +R   +  
Sbjct: 1731 NQAMADAFERLGDKQFQSPL-RWDIIGKNLLAMVAQGPLFLLITLLLQHR--NRLLPQPK 1787

Query: 184  PH-PVPVSLEEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRG 242
               P P+  E++DV +ERERV +GA  GDVLV++ L K+Y   +   PAV+ +  G+  G
Sbjct: 1788 SRLPPPLGEEDEDVVRERERVTKGATQGDVLVLRDLTKVYRGQR--SPAVDHLCLGIPPG 1845

Query: 243  ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
            ECFGLLG+NGAGKT+TF+M+TG   P+SG A +  H++
Sbjct: 1846 ECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNV 1883

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Rattus norvegicus (taxid: 10116)

>sp|O95477|ABCA1_HUMAN ATP-binding cassette sub-family A member 1 OS=Homo sapiens GN=ABCA1 PE=1 SV=3

 Score =  224 bits (572), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 121/284 (42%), Positives = 179/284 (63%), Gaps = 14/284 (4%)

Query: 2    YSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSV 61
            + +D+  Y   +TLV+ IF+ F++++Y+S  NLP L  LLL YG ++ PLMYP SF+F +
Sbjct: 1703 FVWDMCNYVVPATLVIIIFICFQQKSYVSSTNLPVLALLLLLYGWSITPLMYPASFVFKI 1762

Query: 62   PSTAFVVLGCFNLFVGLITTLTVTVLDNLQDDTLEYVNQYLKVIFLIFPHFCLGEGLMKL 121
            PSTA+VVL   NLF+G+  ++   VL+   D+ L  +N  LK +FLIFPHFCLG GL+ +
Sbjct: 1763 PSTAYVVLTSVNLFIGINGSVATFVLELFTDNKLNNINDILKSVFLIFPHFCLGRGLIDM 1822

Query: 122  ANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFTR 181
                  +     +G     V+  +W ++G+NL  MA  G ++  I + I+Y+ F R    
Sbjct: 1823 VKNQAMADALERFGENRF-VSPLSWDLVGRNLFAMAVEGVVFFLITVLIQYRFFIR---- 1877

Query: 182  SNPHPV-----PVSLEEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQIS 236
              P PV     P++ E++DVR+ER+R+  G    D+L +K L KIY   +  KPAV++I 
Sbjct: 1878 --PRPVNAKLSPLNDEDEDVRRERQRILDGGGQNDILEIKELTKIYRRKR--KPAVDRIC 1933

Query: 237  FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
             G+  GECFGLLG+NGAGK++TFKMLTG    T G+A++  +SI
Sbjct: 1934 VGIPPGECFGLLGVNGAGKSSTFKMLTGDTTVTRGDAFLNKNSI 1977

cAMP-dependent and sulfonylurea-sensitive anion transporter. Key gatekeeper influencing intracellular cholesterol transport.

Homo sapiens (taxid: 9606)

>sp|P41233|ABCA1_MOUSE ATP-binding cassette sub-family A member 1 OS=Mus musculus GN=Abca1 PE=1 SV=4

 Score =  224 bits (571), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 121/284 (42%), Positives = 179/284 (63%), Gaps = 14/284 (4%)

Query: 2    YSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSV 61
            + +D+  Y   +TLV+ IF+ F++++Y+S  NLP L  LLL YG ++ PLMYP SF+F +
Sbjct: 1703 FVWDMCNYVVPATLVIIIFICFQQKSYVSSTNLPVLALLLLLYGWSITPLMYPASFVFKI 1762

Query: 62   PSTAFVVLGCFNLFVGLITTLTVTVLDNLQDDTLEYVNQYLKVIFLIFPHFCLGEGLMKL 121
            PSTA+VVL   NLF+G+  ++   VL+   ++ L  +N  LK +FLIFPHFCLG GL+ +
Sbjct: 1763 PSTAYVVLTSVNLFIGINGSVATFVLELFTNNKLNDINDILKSVFLIFPHFCLGRGLIDM 1822

Query: 122  ANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFTR 181
                  +     +G     V+  +W ++G+NL  MA  G ++  I + I+Y+ F R    
Sbjct: 1823 VKNQAMADALERFGENRF-VSPLSWDLVGRNLFAMAVEGVVFFLITVLIQYRFFIR---- 1877

Query: 182  SNPHPV-----PVSLEEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQIS 236
              P PV     P++ E++DVR+ER+R+  G    D+L +K L KIY   +  KPAV++I 
Sbjct: 1878 --PRPVKAKLPPLNDEDEDVRRERQRILDGGGQNDILEIKELTKIYRRKR--KPAVDRIC 1933

Query: 237  FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
             G+  GECFGLLG+NGAGK+TTFKMLTG    T G+A++  +SI
Sbjct: 1934 IGIPPGECFGLLGVNGAGKSTTFKMLTGDTPVTRGDAFLNKNSI 1977

cAMP-dependent and sulfonylurea-sensitive anion transporter. Key gatekeeper influencing intracellular cholesterol transport.

Mus musculus (taxid: 10090)

>sp|P78363|ABCA4_HUMAN Retinal-specific ATP-binding cassette transporter OS=Homo sapiens GN=ABCA4 PE=1 SV=3

 Score =  218 bits (555), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 126/278 (45%), Positives = 179/278 (64%), Gaps = 5/278 (1%)

Query: 4    YDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSVPS 63
            +D++ Y+ S+ LVV IF+ F+++AY SP+NLP LVALLL YG AVIP+MYP SF+F VPS
Sbjct: 1730 WDIMNYSVSAGLVVGIFIGFQKKAYTSPENLPALVALLLLYGWAVIPMMYPASFLFDVPS 1789

Query: 64   TAFVVLGCFNLFVGLITTLTVTVLDNLQDD-TLEYVNQYLKVIFLIFPHFCLGEGLMKLA 122
            TA+V L C NLF+G+ ++    +L+  +++ TL   N  L+ + ++FPHFCLG GL+ LA
Sbjct: 1790 TAYVALSCANLFIGINSSAITFILELFENNRTLLRFNAVLRKLLIVFPHFCLGRGLIDLA 1849

Query: 123  NTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRS 182
             +   +     +G    A N + W +IGKNL  M   G +Y  + L ++   F   +  +
Sbjct: 1850 LSQAVTDVYARFGEEHSA-NPFHWDLIGKNLFAMVVEGVVYFLLTLLVQRHFFLSQWI-A 1907

Query: 183  NPHPVPVSLEEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRG 242
             P   P+  E+DDV +ER+R+  G +  D+L +  L KIY  +  + PAV+++  GV  G
Sbjct: 1908 EPTKEPIVDEDDDVAEERQRIITGGNKTDILRLHELTKIYPGT--SSPAVDRLCVGVRPG 1965

Query: 243  ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
            ECFGLLG+NGAGKTTTFKMLTG    TSG+A V   SI
Sbjct: 1966 ECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSI 2003

In the visual cycle, acts as an inward-directed retinoid flipase, retinoid substrates imported by ABCA4 from the extracellular or intradiscal (rod) membrane surfaces to the cytoplasmic membrane surface are all-trans-retinaldehyde (ATR) and N-retinyl-phosphatidyl-ethanolamine (NR-PE). Once transported to the cytoplasmic surface, ATR is reduced to vitamin A by trans-retinol dehydrogenase (tRDH) and then transferred to the retinal pigment epithelium (RPE) where it is converted to 11-cis-retinal. May play a role in photoresponse, removing ATR/NR-PE from the extracellular photoreceptor surfaces during bleach recovery.

Homo sapiens (taxid: 9606)

>sp|Q8IZY2|ABCA7_HUMAN ATP-binding cassette sub-family A member 7 OS=Homo sapiens GN=ABCA7 PE=1 SV=3

 Score =  213 bits (543), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 122/280 (43%), Positives = 176/280 (62%), Gaps = 6/280 (2%)

Query: 2    YSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSV 61
            + +D+  Y   + +VV IFLAF++ AY++P NLP L+ LLL YG ++ PLMYP SF FSV
Sbjct: 1584 FLWDMCNYLVPACIVVLIFLAFQQRAYVAPANLPALLLLLLLYGWSITPLMYPASFFFSV 1643

Query: 62   PSTAFVVLGCFNLFVGLITTLTVTVLDNLQDDTLEYVNQYLKVIFLIFPHFCLGEGLMKL 121
            PSTA+VVL C NLF+G+  ++   VL+   D  L+ V++ LK +FLIFPHFCLG GL+ +
Sbjct: 1644 PSTAYVVLTCINLFIGINGSMATFVLELFSDQKLQEVSRILKQVFLIFPHFCLGRGLIDM 1703

Query: 122  ANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFTR 181
                  +      G R     +  W ++GKNL  M   G L+    L ++++  S+   +
Sbjct: 1704 VRNQAMADAFERLGDRQFQSPL-RWEVVGKNLLAMVIQGPLFLLFTLLLQHR--SQLLPQ 1760

Query: 182  SNPHPVPVSLEED-DVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVG 240
                 +P+  EED DV +ERERV +GA  GDVLV++ L K+Y   +   PAV+++  G+ 
Sbjct: 1761 PRVRSLPLLGEEDEDVARERERVVQGATQGDVLVLRNLTKVYRGQR--MPAVDRLCLGIP 1818

Query: 241  RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
             GECFGLLG+NGAGKT+TF+M+TG    + G A +  HS+
Sbjct: 1819 PGECFGLLGVNGAGKTSTFRMVTGDTLASRGEAVLAGHSV 1858

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Homo sapiens (taxid: 9606)

>sp|Q9BZC7|ABCA2_HUMAN ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3

 Score =  197 bits (502), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 113/285 (39%), Positives = 164/285 (57%), Gaps = 12/285 (4%)

Query: 2    YSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSV 61
            Y +D+L Y   +T  V I   F   AY SP N P +++L L YG ++ P+MYP SF F V
Sbjct: 1840 YVWDMLNYLVPATCCVIILFVFDLPAYTSPTNFPAVLSLFLLYGWSITPIMYPASFWFEV 1899

Query: 62   PSTAFVVLGCFNLFVGLITTLTVTVLDNLQ-DDTLEYVNQYLKVIFLIFPHFCLGEGLMK 120
            PS+A+V L   NLF+G+  T+   +L   + D  L+ VN YLK  FLIFP++ LG GLM+
Sbjct: 1900 PSSAYVFLIVINLFIGITATVATFLLQLFEHDKDLKVVNSYLKSCFLIFPNYNLGHGLME 1959

Query: 121  LANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFT 180
            +A   + + +    G      + + W ++ + L  MA  G +   + +  +Y    R   
Sbjct: 1960 MAYNEYINEYYAKIGQFDKMKSPFEWDIVTRGLVAMAVEGVVGFLLTIMCQYNFLRR--- 2016

Query: 181  RSNPHPVPVS---LEED-DVRKERERVERGADSGDVLVVKRLFKIYANSKDTKP-AVNQI 235
               P  +PVS   +E+D DV  ER+RV RG    D++ ++ L K+Y + K  +  AV+++
Sbjct: 2017 ---PQRMPVSTKPVEDDVDVASERQRVLRGDADNDMVKIENLTKVYKSRKIGRILAVDRL 2073

Query: 236  SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
              GV  GECFGLLG+NGAGKT+TFKMLTG    T G A+V  HS+
Sbjct: 2074 CLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSV 2118

Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development.

Homo sapiens (taxid: 9606)

>sp|P41234|ABCA2_MOUSE ATP-binding cassette sub-family A member 2 OS=Mus musculus GN=Abca2 PE=1 SV=4

 Score =  192 bits (489), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 113/285 (39%), Positives = 164/285 (57%), Gaps = 12/285 (4%)

Query: 2    YSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSV 61
            Y +D+L Y   +T  V I   F   AY SP N P +++L L YG ++ P+MYP SF F V
Sbjct: 1841 YVWDMLNYLVPATCCVIILFVFDLPAYTSPTNFPAVLSLFLLYGWSITPIMYPASFWFEV 1900

Query: 62   PSTAFVVLGCFNLFVGLITTLTVTVLDNLQDDT-LEYVNQYLKVIFLIFPHFCLGEGLMK 120
            PS+A+V L   NLF+G+  T+   +L   + D  L+ VN YLK  FLIFP++ LG GLM+
Sbjct: 1901 PSSAYVFLIVINLFIGITATVATFLLQLFEHDKDLKVVNSYLKSCFLIFPNYNLGHGLME 1960

Query: 121  LANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFT 180
            +A   + + +    G      + + W ++ + L  M   G +   + +  +Y      F 
Sbjct: 1961 MAYNEYINEYYAKIGQFDKMKSPFEWDIVTRGLVAMTVEGFVGFFLTIMCQYN-----FL 2015

Query: 181  RSNPHPVPVS---LEED-DVRKERERVERGADSGDVLVVKRLFKIYANSKDTKP-AVNQI 235
            R  P  +PVS   +E+D DV  ER+RV RG    D++ ++ L K+Y + K  +  AV+++
Sbjct: 2016 R-QPQRLPVSTKPVEDDVDVASERQRVLRGDADNDMVKIENLTKVYKSRKIGRILAVDRL 2074

Query: 236  SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
              GV  GECFGLLG+NGAGKT+TFKMLTG    T G A+V  HS+
Sbjct: 2075 CLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSV 2119

Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development.

Mus musculus (taxid: 10090)

>sp|Q9ESR9|ABCA2_RAT ATP-binding cassette sub-family A member 2 OS=Rattus norvegicus GN=Abca2 PE=1 SV=1

 Score =  192 bits (488), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 112/285 (39%), Positives = 164/285 (57%), Gaps = 12/285 (4%)

Query: 2    YSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSV 61
            Y +D+L Y   +T  + I   F   AY SP N P +++L L YG ++ P+MYP SF F V
Sbjct: 1841 YVWDMLNYLVPATCCIIILFVFDLPAYTSPTNFPAVLSLFLLYGWSITPIMYPASFWFEV 1900

Query: 62   PSTAFVVLGCFNLFVGLITTLTVTVLDNLQ-DDTLEYVNQYLKVIFLIFPHFCLGEGLMK 120
            PS+A+V L   NLF+G+  T+   +L   + D  L+ VN YLK  FLIFP++ LG GLM+
Sbjct: 1901 PSSAYVFLIVINLFIGITATVATFLLQLFEHDKDLKVVNSYLKSCFLIFPNYNLGHGLME 1960

Query: 121  LANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFT 180
            +A   + + +    G      + + W ++ + L  M   G +   + +  +Y      F 
Sbjct: 1961 IAYNEYINEYYAKIGQFDKMKSPFEWDIVTRGLVAMTVEGFVGFFLTIMCQYN-----FL 2015

Query: 181  RSNPHPVPVS---LEED-DVRKERERVERGADSGDVLVVKRLFKIYANSKDTKP-AVNQI 235
            R  P  +PVS   +E+D DV  ER+RV RG    D++ ++ L K+Y + K  +  AV+++
Sbjct: 2016 R-QPQRLPVSTKPVEDDVDVASERQRVLRGDADNDMVKIENLTKVYKSRKIGRILAVDRL 2074

Query: 236  SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
              GV  GECFGLLG+NGAGKT+TFKMLTG    T G A+V  HS+
Sbjct: 2075 CLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSV 2119

Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
126311366	2305	PREDICTED: retinal-specific ATP-binding	0.940	0.117	0.478	9e-64
440906916	2282	Retinal-specific ATP-binding cassette tr	0.947	0.119	0.460	9e-63
27806343	2281	retinal-specific ATP-binding cassette tr	0.947	0.119	0.460	1e-62
296489273	2281	TPA: ATP-binding cassette, sub-family A	0.947	0.119	0.460	1e-62
354480836	2166	PREDICTED: ATP-binding cassette sub-fami	0.944	0.125	0.460	6e-62
321476610	2199	ABC protein, subfamily ABCA [Daphnia pul	0.947	0.124	0.442	7e-62
443734953	2255	hypothetical protein CAPTEDRAFT_226736 [	0.979	0.125	0.428	8e-62
148680381	1897	ATP-binding cassette, sub-family A (ABC1	0.968	0.147	0.461	1e-61
326671570	2323	PREDICTED: ATP-binding cassette sub-fami	0.965	0.119	0.448	2e-61
351714026	2140	ATP-binding cassette sub-family A member	0.937	0.126	0.436	2e-61

>gi|126311366|ref|XP_001381788.1| PREDICTED: retinal-specific ATP-binding cassette transporter-like [Monodelphis domestica]

 Score =  249 bits (636), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 134/280 (47%), Positives = 186/280 (66%), Gaps = 9/280 (3%)

Query: 4    YDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSVPS 63
            +D++ Y+ S+ LVV IF+ F++ AY SPQNLP L+ALL  YG AVIP+MYP SF+F VPS
Sbjct: 1729 WDIVNYSVSAGLVVGIFIGFQKRAYTSPQNLPALIALLFLYGWAVIPMMYPASFLFDVPS 1788

Query: 64   TAFVVLGCFNLFVGLITTLTVTVLDNLQDD-TLEYVNQYLKVIFLIFPHFCLGEGLMKLA 122
            TA+V L C NLF+G+ ++    VL+  +++ TL   +  L+   LIFPHFCLG GL+ LA
Sbjct: 1789 TAYVALACANLFIGINSSAITFVLELFENNRTLLKFSAMLRKALLIFPHFCLGRGLIDLA 1848

Query: 123  NTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFTR- 181
                 +    ++G    + + + W +IGKNL  MA  G +Y A+NL I++  F    TR 
Sbjct: 1849 VNQAVTDVYAAFGEEH-SSDPFQWDLIGKNLVAMAVEGGVYFAMNLLIQHHFF---LTRW 1904

Query: 182  -SNPHPVPVSLEEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVG 240
             + P   P+S E+DDV +ER+R+  G++  D+L +  L KIY+ +  T PAV+++  GV 
Sbjct: 1905 IAEPPKQPISDEDDDVAEERQRILSGSNKTDILRLHELTKIYSGT--TSPAVDRLCIGVR 1962

Query: 241  RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
             GECFGLLG+NGAGKTTTFKMLTG I  TSG+A V  +SI
Sbjct: 1963 PGECFGLLGVNGAGKTTTFKMLTGDISVTSGDAIVAGNSI 2002

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|440906916|gb|ELR57130.1| Retinal-specific ATP-binding cassette transporter, partial [Bos grunniens mutus]

 Score =  246 bits (628), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 128/278 (46%), Positives = 186/278 (66%), Gaps = 5/278 (1%)

Query: 4    YDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSVPS 63
            +D++ YT S+ LVV IF+ F+++AY S +NLP LVALL+ YG AVIP+MYP SF+F +PS
Sbjct: 1740 WDIMNYTVSAALVVGIFIGFQKKAYTSSENLPALVALLMLYGWAVIPMMYPASFLFDIPS 1799

Query: 64   TAFVVLGCFNLFVGLITTLTVTVLDNLQDD-TLEYVNQYLKVIFLIFPHFCLGEGLMKLA 122
            TA+V L C NLF+G+ ++    VL+  +++ TL  +N  L+ + +IFPHFCLG GL+ LA
Sbjct: 1800 TAYVALSCANLFIGINSSAITFVLELFENNRTLLRINAMLRKLLIIFPHFCLGRGLIDLA 1859

Query: 123  NTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRS 182
             +   +     +G    + N + W +IGKNL  MA  G +Y  + L I+Y+ F   +T +
Sbjct: 1860 LSQAVTDVYARFGEEH-SSNPFQWDLIGKNLAAMAVEGVVYFLLTLLIQYQFFFSRWT-T 1917

Query: 183  NPHPVPVSLEEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRG 242
             P   P++ E+DDV +ER+R+  G +  D+L +  L K+Y+++  + PAV+++  GV  G
Sbjct: 1918 EPAKEPITDEDDDVAEERQRIISGGNKTDILRLNELTKVYSST--SSPAVDRLCVGVRPG 1975

Query: 243  ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
            ECFGLLG+NGAGKTTTFKMLTG    TSG+A V   SI
Sbjct: 1976 ECFGLLGVNGAGKTTTFKMLTGDTAVTSGDATVAGKSI 2013

Source: Bos grunniens mutus

Species: Bos grunniens

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|27806343|ref|NP_776646.1| retinal-specific ATP-binding cassette transporter [Bos taurus] gi|1943947|gb|AAC48716.1| ABC transporter [Bos taurus]

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 128/278 (46%), Positives = 185/278 (66%), Gaps = 5/278 (1%)

Query: 4    YDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSVPS 63
            +D++ YT S+ LVV IF+ F+++AY S +NLP LVALL+ YG AVIP+MYP SF+F +PS
Sbjct: 1728 WDIMNYTVSAALVVGIFIGFQKKAYTSSENLPALVALLMLYGWAVIPMMYPASFLFDIPS 1787

Query: 64   TAFVVLGCFNLFVGLITTLTVTVLDNLQDD-TLEYVNQYLKVIFLIFPHFCLGEGLMKLA 122
            TA+V L C NLF+G+ ++    VL+  +++ TL  +N  L+ + +IFPHFCLG GL+ LA
Sbjct: 1788 TAYVALSCANLFIGINSSAITFVLELFENNRTLLRINAMLRKLLIIFPHFCLGRGLIDLA 1847

Query: 123  NTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRS 182
             +   +     +G    + N + W +IGKNL  MA  G +Y  + L I+Y+ F   +T +
Sbjct: 1848 LSQAVTDVYAQFG-EAHSSNPFQWDLIGKNLAAMAVEGVVYFLLTLLIQYQFFFSRWT-T 1905

Query: 183  NPHPVPVSLEEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRG 242
             P   P++ E+DDV +ER+R+  G +  D+L +  L K+Y+ +  + PAV+++  GV  G
Sbjct: 1906 EPAKEPITDEDDDVAEERQRIISGGNKTDILRLNELTKVYSGT--SSPAVDRLCVGVRPG 1963

Query: 243  ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
            ECFGLLG+NGAGKTTTFKMLTG    TSG+A V   SI
Sbjct: 1964 ECFGLLGVNGAGKTTTFKMLTGDTAVTSGDATVAGKSI 2001

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|296489273|tpg|DAA31386.1| TPA: ATP-binding cassette, sub-family A (ABC1), member 4 [Bos taurus]

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 128/278 (46%), Positives = 185/278 (66%), Gaps = 5/278 (1%)

Query: 4    YDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSVPS 63
            +D++ YT S+ LVV IF+ F+++AY S +NLP LVALL+ YG AVIP+MYP SF+F +PS
Sbjct: 1728 WDIMNYTVSAALVVGIFIGFQKKAYTSSENLPALVALLMLYGWAVIPMMYPASFLFDIPS 1787

Query: 64   TAFVVLGCFNLFVGLITTLTVTVLDNLQDD-TLEYVNQYLKVIFLIFPHFCLGEGLMKLA 122
            TA+V L C NLF+G+ ++    VL+  +++ TL  +N  L+ + +IFPHFCLG GL+ LA
Sbjct: 1788 TAYVALSCANLFIGINSSAITFVLELFENNRTLLRINAMLRKLLIIFPHFCLGRGLIDLA 1847

Query: 123  NTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRS 182
             +   +     +G    + N + W +IGKNL  MA  G +Y  + L I+Y+ F   +T +
Sbjct: 1848 LSQAVTDVYARFGEEH-SSNPFQWDLIGKNLAAMAVEGVVYFLLTLLIQYQFFFSRWT-T 1905

Query: 183  NPHPVPVSLEEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRG 242
             P   P++ E+DDV +ER+R+  G +  D+L +  L K+Y+ +  + PAV+++  GV  G
Sbjct: 1906 EPAKEPITDEDDDVAEERQRIISGGNKTDILRLNELTKVYSGT--SSPAVDRLCVGVRPG 1963

Query: 243  ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
            ECFGLLG+NGAGKTTTFKMLTG    TSG+A V   SI
Sbjct: 1964 ECFGLLGVNGAGKTTTFKMLTGDTAVTSGDATVAGKSI 2001

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|354480836|ref|XP_003502609.1| PREDICTED: ATP-binding cassette sub-family A member 7 [Cricetulus griseus]

 Score =  243 bits (621), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 128/278 (46%), Positives = 181/278 (65%), Gaps = 6/278 (2%)

Query: 4    YDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSVPS 63
            +D+  Y  +  +VVFIFLAF++ AY+SPQNLP L+ LLL YG ++ PLMYP SF FSVPS
Sbjct: 1608 WDMCNYLVAMCIVVFIFLAFQQRAYVSPQNLPALLLLLLLYGWSITPLMYPASFFFSVPS 1667

Query: 64   TAFVVLGCFNLFVGLITTLTVTVLDNLQDDTLEYVNQYLKVIFLIFPHFCLGEGLMKLAN 123
            TA+VVL C NLF+G+ +++   VL+ L D  L+ V++ LK +FLIFPHFCLG GL+ +  
Sbjct: 1668 TAYVVLTCINLFIGINSSMATFVLELLSDQKLQEVSRILKQVFLIFPHFCLGRGLIDMVR 1727

Query: 124  TYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSN 183
                       G +     +  W +IGKNL  M   G L+  I L ++++  +    +S 
Sbjct: 1728 NQAMEDAFERLGDKQFQSPL-RWDVIGKNLLAMVVQGPLFLLITLILQHR--NHLLPQSK 1784

Query: 184  PHPVPVSLEED-DVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRG 242
            P  +P   EED DV +ER RV +GA +GDVLV++ L K+Y   +   PAV+++  G+  G
Sbjct: 1785 PKLLPPLGEEDEDVAQERGRVTKGATTGDVLVLRDLTKVYRGQR--SPAVDRLCLGIAPG 1842

Query: 243  ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
            ECFGLLG+NGAGKT+TF+M+TG   P+SG A +  H++
Sbjct: 1843 ECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNV 1880

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|321476610|gb|EFX87570.1| ABC protein, subfamily ABCA [Daphnia pulex]

 Score =  243 bits (620), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 124/280 (44%), Positives = 181/280 (64%), Gaps = 7/280 (2%)

Query: 2    YSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSV 61
            Y++D++ Y   S LV+FIF+ F ++AYI P+N+ G++ LL+ YG + I LMYP S +FSV
Sbjct: 1639 YTWDMMNYLIPSALVIFIFIGFDQQAYIGPKNIAGMILLLILYGLSAIALMYPASLVFSV 1698

Query: 62   PSTAFVVLGCFNLFVGLITTLTVTVLDNLQDDTLEYVNQYLKVIFLIFPHFCLGEGLMKL 121
            PS+AFV L C NLF+G+ITT++  VL    D  L+ +   L  ++LIFPH+CLG G++ +
Sbjct: 1699 PSSAFVGLACGNLFIGVITTISSFVLQLFDDAQLKLIGSILNEVYLIFPHYCLGRGMIDM 1758

Query: 122  ANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFTR 181
            A  ++T+      G      NI+ W  +G+    M     ++ +  + + Y+V      R
Sbjct: 1759 AQVHYTTQRLELLGLD-YQRNIFEWDYLGRYFLSMVLQAVVFFSFTVLLHYQVLPES-VR 1816

Query: 182  SNPHPVPVSLEEDDVRKERERVERGAD-SGDVLVVKRLFKIYANSKDTKPAVNQISFGVG 240
            +   P+P  LE++DV +ERERVE+  D S D L + RL K+Y   K+  PA N++SFG+ 
Sbjct: 1817 TQLQPLP--LEDEDVARERERVEQIDDESTDELRLLRLTKVYGRGKE--PATNRLSFGLK 1872

Query: 241  RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
            +GECFGLLG+NGAGK+TTFKMLTG    TSGNA+V  +SI
Sbjct: 1873 KGECFGLLGVNGAGKSTTFKMLTGDETVTSGNAFVGGYSI 1912

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443734953|gb|ELU18808.1| hypothetical protein CAPTEDRAFT_226736 [Capitella teleta]

 Score =  243 bits (619), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 125/292 (42%), Positives = 185/292 (63%), Gaps = 10/292 (3%)

Query: 2    YSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSV 61
            +++D+L Y  S  L + IF+AF++ AY+S  N P LV+LLL YG A  P+MYP S  F+V
Sbjct: 1646 FTWDMLNYLVSGILCILIFVAFQQNAYVSQTNAPCLVSLLLLYGWAATPMMYPASHFFNV 1705

Query: 62   PSTAFVVLGCFNLFVGLITTLTVTVLDNLQDDTLEYVNQYLKVIFLIFPHFCLGEGLMKL 121
            PS+AFV+LGC N+F+G+I+TL+  +L+   +  L+ +N  +  +FL+ PH+CLG GL+ +
Sbjct: 1706 PSSAFVILGCMNIFLGIISTLSTFILEAFMEQELDEINAIIMKVFLVLPHYCLGRGLIDM 1765

Query: 122  ANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFTR 181
                  +    + G      + + W ++G+NL  ++  G  +  +N+ IEYK +      
Sbjct: 1766 TRNQLVADIFENLGETFFQ-SPFTWDIVGRNLLSLSILGVFFFFLNICIEYKFWIYSMKC 1824

Query: 182  SNP--HPVPVSLEED-----DVRKERERVERGADSGDVLVVKRLFKIYANSKDTK--PAV 232
             +P    +PV++EE      DV +ERERV  GA SGD+L ++ L K+Y +    K   AV
Sbjct: 1825 ISPCKEQIPVNVEETDEEDIDVVRERERVTLGAASGDILTLEGLTKVYKSPLKNKGHRAV 1884

Query: 233  NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 284
            +++S GV  GECFGLLG+NGAGKTTTFKMLTG IK T G+A++  HSIR  M
Sbjct: 1885 DRLSVGVHSGECFGLLGVNGAGKTTTFKMLTGNIKSTDGDAHLAGHSIRSEM 1936

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|148680381|gb|EDL12328.1| ATP-binding cassette, sub-family A (ABC1), member 4 [Mus musculus]

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 133/288 (46%), Positives = 184/288 (63%), Gaps = 9/288 (3%)

Query: 4    YDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSVPS 63
            +D++ Y  S+ LVV IF+ F+++AY SP NLP LV+LL+ YG AVIP+MYP SF+F VPS
Sbjct: 1347 WDIMNYAVSAGLVVGIFIGFQKKAYTSPDNLPALVSLLMLYGWAVIPMMYPASFLFEVPS 1406

Query: 64   TAFVVLGCFNLFVGLITTLTVTVLDNLQDD-TLEYVNQYLKVIFLIFPHFCLGEGLMKLA 122
            TA+V L C NLF+G+ ++    VL+  +++ TL   N  L+ + ++FPHFCLG GL+ LA
Sbjct: 1407 TAYVALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPHFCLGRGLIDLA 1466

Query: 123  NTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFTR- 181
             +   +     +G    A N + W +IGKNL  MA  G +Y  + L I++  F    TR 
Sbjct: 1467 LSQAVTDVYAQFGEEYSA-NPFQWDLIGKNLVAMAIEGVVYFLLTLLIQHHFF---LTRW 1522

Query: 182  -SNPHPVPVSLEEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVG 240
             + P   PV  E+DDV +ER+RV  G +  D+L +  L K+Y+ S  + PAV+++  GV 
Sbjct: 1523 IAEPAREPVFDEDDDVAEERQRVMSGGNKTDILKLNELTKVYSGS--SSPAVDRLCVGVR 1580

Query: 241  RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 288
             GECFGLLG+NGAGKTTTFKMLTG    TSG+A V   SI  S+  V 
Sbjct: 1581 PGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTSISDVH 1628

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326671570|ref|XP_001920862.3| PREDICTED: ATP-binding cassette sub-family A member 1 [Danio rerio]

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 132/294 (44%), Positives = 190/294 (64%), Gaps = 16/294 (5%)

Query: 2    YSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSV 61
            Y +D++ YT  +T+VVFIF++F++E+Y+S +NLP LV LLL YG ++ PLMYP SFIFSV
Sbjct: 1684 YVWDMVNYTVPATMVVFIFISFQQESYVSEKNLPALVLLLLLYGWSITPLMYPASFIFSV 1743

Query: 62   PSTAFVVLGCFNLFVGLITTLTVTVLDNLQDDTLEYVNQYLKVIFLIFPHFCLGEGLMKL 121
            PSTA+VVL   NLF+G+  ++   VL+   D+ L  VN+ LK +FLIFPHFCLG GL+ +
Sbjct: 1744 PSTAYVVLTSINLFIGINGSVATFVLELFVDEHLNEVNRILKKVFLIFPHFCLGRGLIDM 1803

Query: 122  ANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVF------ 175
            A     +      GT+   ++  +W  +GKNL  MA  G ++    + ++YK F      
Sbjct: 1804 AKNQAMADAFQRLGTK-QNLDPLSWDFVGKNLFAMAMEGIVFFLFTVLLQYKFFVNFRWV 1862

Query: 176  --SRCFTRSNPHPVPVSLEEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVN 233
                CF        P+ +E++DV +ERERV+ G   GD+L++  L K+Y   +  KPAVN
Sbjct: 1863 CMPECFVLP-----PLGMEDEDVARERERVKNGRALGDILILSDLSKVYKAGR--KPAVN 1915

Query: 234  QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLV 287
            ++  G+ RGECFGLLG+NGAGKT+TF+MLTG  + T G A++ N S+   M+ V
Sbjct: 1916 RLCLGIPRGECFGLLGVNGAGKTSTFRMLTGDTRITYGEAFLSNQSVLTEMEKV 1969

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|351714026|gb|EHB16945.1| ATP-binding cassette sub-family A member 7 [Heterocephalus glaber]

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 124/284 (43%), Positives = 181/284 (63%), Gaps = 14/284 (4%)

Query: 2    YSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSV 61
            + +D+  Y  ++ +VV IFLAF+++AY++P+NLP L+ LLL YG ++ PLMYP SF FSV
Sbjct: 1582 FLWDMCNYLVTACIVVLIFLAFQQKAYVAPENLPALLLLLLLYGWSITPLMYPASFFFSV 1641

Query: 62   PSTAFVVLGCFNLFVGLITTLTVTVLDNLQDDTLEYVNQYLKVIFLIFPHFCLGEGLMKL 121
            PSTA+VVL C NLF+G+  ++   VL+ L D  L++V++ LK +FLIFPHFCLG GL+ +
Sbjct: 1642 PSTAYVVLTCINLFIGINGSMATFVLELLSDQNLQHVSRILKWVFLIFPHFCLGRGLIDM 1701

Query: 122  ANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFTR 181
                  +      G       +  W ++GKNL  M   G L+  + L ++++      + 
Sbjct: 1702 VRNQAMADAFERLGDSQFQSPL-RWEVVGKNLLAMVVQGPLFLFVTLLLQHR------SH 1754

Query: 182  SNPHPV-----PVSLEEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQIS 236
              PHP      P+  E++DV  ERERV RGA  GDVLV+K L K+Y   +   PAV+++ 
Sbjct: 1755 LLPHPKLGLLPPLGEEDEDVAWERERVTRGATQGDVLVLKDLTKVYHGQR--TPAVDRLC 1812

Query: 237  FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
             G+  GECFGLLG+NGAGKT+TF+M++G   P+ G A +  HS+
Sbjct: 1813 LGIPPGECFGLLGVNGAGKTSTFRMVSGDTLPSGGEAVLAGHSV 1856

Source: Heterocephalus glaber

Species: Heterocephalus glaber

Genus: Heterocephalus

Family: Bathyergidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
MGI|MGI:1351646	2159	Abca7 "ATP-binding cassette, s	0.951	0.126	0.392	4.6e-49
UNIPROTKB|F1MWM0	2281	ABCA4 "Uncharacterized protein	0.954	0.120	0.407	6.2e-49
UNIPROTKB|F1S539	2278	ABCA4 "Uncharacterized protein	0.954	0.120	0.414	1.3e-48
RGD|1303134	2170	Abca7 "ATP-binding cassette, s	0.951	0.126	0.385	4.8e-48
UNIPROTKB|Q7TNJ2	2170	Abca7 "ATP-binding cassette su	0.951	0.126	0.385	4.8e-48
UNIPROTKB|J9P747	2134	ABCA4 "Uncharacterized protein	0.954	0.128	0.403	7.4e-48
UNIPROTKB|F1P7E4	2268	ABCA4 "Uncharacterized protein	0.954	0.121	0.403	8.9e-48
UNIPROTKB|F1PWT8	2283	ABCA4 "Uncharacterized protein	0.954	0.120	0.403	9e-48
ZFIN|ZDB-GENE-050517-3	2277	abca4a "ATP-binding cassette,	0.954	0.120	0.403	9.3e-48
UNIPROTKB|F6XQY5	2124	ABCA7 "Uncharacterized protein	0.947	0.128	0.384	1.2e-47

MGI|MGI:1351646 Abca7 "ATP-binding cassette, sub-family A (ABC1), member 7" [Mus musculus (taxid:10090)]

 Score = 527 (190.6 bits), Expect = 4.6e-49, P = 4.6e-49
 Identities = 110/280 (39%), Positives = 160/280 (57%)

Query:     2 YSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSV 61
             + +D+  Y  +  +VVFIFLAF++ AY++P+NLP L+ LLL YG ++ PLMYP SF FSV
Sbjct:  1598 FLWDMCNYLVAVCIVVFIFLAFQQRAYVAPENLPALLLLLLLYGWSITPLMYPASFFFSV 1657

Query:    62 PSTAFVVLGCFNXXXXXXXXXXXXXXXXXXXXXXEYVNQYLKVIFLIFPHFCLGEGLMKL 121
             PSTA+VVL C N                      + V++ LK +FLIFPHFCLG GL+ +
Sbjct:  1658 PSTAYVVLTCINLFIGINSSMATFVLELLSDQNLQEVSRILKQVFLIFPHFCLGRGLIDM 1717

Query:   122 ANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFTR 181
                   +      G +     +  W +IGKNL  M   G L+  I L ++++  +R   +
Sbjct:  1718 VRNQAMADAFERLGDKQFQSPL-RWDIIGKNLLAMMAQGPLFLLITLLLQHR--NRLLPQ 1774

Query:   182 SNPHPVP-VSLXXXXXXXXXXXXXXGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVG 240
             S P  +P +                GA  GDVLV++ L K+Y   ++  PAV+++  G+ 
Sbjct:  1775 SKPRLLPPLGEEDEDVAQERERVTKGATQGDVLVLRDLTKVYRGQRN--PAVDRLCLGIP 1832

Query:   241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
              GECFGLLG+NGAGKT+TF+M+TG   P+SG A +  H++
Sbjct:  1833 PGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNV 1872

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005548 "phospholipid transporter activity" evidence=IDA

GO:0005622 "intracellular" evidence=IDA

GO:0005768 "endosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0033700 "phospholipid efflux" evidence=IDA

UNIPROTKB|F1MWM0 ABCA4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 522 (188.8 bits), Expect = 6.2e-49, Sum P(2) = 6.2e-49
 Identities = 114/280 (40%), Positives = 160/280 (57%)

Query:     2 YSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSV 61
             + +D++ YT S+ LVV IF+ F+++AY S +NLP LVALL+ YG AVIP+MYP SF+F +
Sbjct:  1726 FLWDIMNYTVSAALVVGIFIGFQKKAYTSSENLPALVALLMLYGWAVIPMMYPASFLFDI 1785

Query:    62 PSTAFVVLGCFNXXXXXXXXXXXXXXXXXXXXXXEY-VNQYLKVIFLIFPHFCLGEGLMK 120
             PSTA+V L C N                         +N  L+ + +IFPHFCLG GL+ 
Sbjct:  1786 PSTAYVALSCANLFIGINSSAITFVLELFENNRTLLRINAMLRKLLIIFPHFCLGRGLID 1845

Query:   121 LANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFT 180
             LA +   +     +G    + N + W +IGKNL  MA  G +Y  + L I+Y+ F   +T
Sbjct:  1846 LALSQAVTDVYARFGEEHSS-NPFQWDLIGKNLAAMAVEGVVYFLLTLLIQYQFFFSRWT 1904

Query:   181 RSNPHPVPVSLXXXXXXXXXXXXXXGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVG 240
              + P   P++               G +  D+L +  L K+Y+ +  + PAV+++  GV 
Sbjct:  1905 -TEPAKEPITDEDDDVAEERQRIISGGNKTDILRLNELTKVYSGT--SSPAVDRLCVGVR 1961

Query:   241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
              GECFGLLG+NGAGKTTTFKMLTG    TSG+A V   SI
Sbjct:  1962 PGECFGLLGVNGAGKTTTFKMLTGDTAVTSGDATVAGKSI 2001

GO:0045494 "photoreceptor cell maintenance" evidence=IEA

GO:0006649 "phospholipid transfer to membrane" evidence=IEA

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

UNIPROTKB|F1S539 ABCA4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 517 (187.1 bits), Expect = 1.3e-48, Sum P(2) = 1.3e-48
 Identities = 116/280 (41%), Positives = 156/280 (55%)

Query:     2 YSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSV 61
             + +D++ Y  S+ LVV IF+ F+++AY SP NLP LVALLL YG AVIP+MYP SF+F V
Sbjct:  1722 FLWDMMNYAVSAALVVSIFVGFQKKAYTSPDNLPALVALLLLYGWAVIPMMYPASFLFDV 1781

Query:    62 PSTAFVVLGCFNXXXXXXXXXXXXXXXXXXXXXXEY-VNQYLKVIFLIFPHFCLGEGLMK 120
             PSTA+V L C N                          N  L+ + +IFPHFCLG GL+ 
Sbjct:  1782 PSTAYVALACANLFIGINSSAITFVLELFENNQTLLRFNAMLRKLLIIFPHFCLGRGLID 1841

Query:   121 LANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFT 180
             LA +   +     +G    + + + W +IGKNL  MA  G +Y  + L I+++ F R +T
Sbjct:  1842 LALSQAVTDVYARFGEEHSS-SPFQWELIGKNLAAMAAEGVVYFLLTLLIQHQFFFRRWT 1900

Query:   181 RSNPHPVPVSLXXXXXXXXXXXXXXGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVG 240
              + P   P+                G    D+L +  L KIY  +  + PAV+++  GV 
Sbjct:  1901 -TEPATEPIDNEDDDVAEERQRIIGGGTKTDILRLNELTKIYPGA--SSPAVDRLCVGVR 1957

Query:   241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
              GECFGLLG+NGAGKTTTFKMLTG    TSG+A V   SI
Sbjct:  1958 PGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSI 1997

GO:0045494 "photoreceptor cell maintenance" evidence=IEA

GO:0006649 "phospholipid transfer to membrane" evidence=IEA

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

RGD|1303134 Abca7 "ATP-binding cassette, subfamily A (ABC1), member 7" [Rattus norvegicus (taxid:10116)]

 Score = 514 (186.0 bits), Expect = 4.8e-48, Sum P(2) = 4.8e-48
 Identities = 108/280 (38%), Positives = 156/280 (55%)

Query:     2 YSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSV 61
             + +D+  Y  +  +VV IFLAF+++AY++P+NLP L+ LLL YG ++ PLMYP SF FSV
Sbjct:  1609 FLWDMCNYLVAVCIVVLIFLAFQQKAYVAPENLPALLLLLLLYGWSITPLMYPASFFFSV 1668

Query:    62 PSTAFVVLGCFNXXXXXXXXXXXXXXXXXXXXXXEYVNQYLKVIFLIFPHFCLGEGLMKL 121
             PSTA+VVL C N                      + V++ LK +FLIFPHFCLG GL+ +
Sbjct:  1669 PSTAYVVLTCINLFIGINSSMATFVLELLSDQNLQEVSRILKQVFLIFPHFCLGRGLIDM 1728

Query:   122 ANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFTR 181
                   +      G +     +  W +IGKNL  M   G L+  I L ++++  +R   +
Sbjct:  1729 VRNQAMADAFERLGDKQFQSPL-RWDIIGKNLLAMVAQGPLFLLITLLLQHR--NRLLPQ 1785

Query:   182 SNPH-PVPVSLXXXXXXXXXXXXXXGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVG 240
                  P P+                GA  GDVLV++ L K+Y   +   PAV+ +  G+ 
Sbjct:  1786 PKSRLPPPLGEEDEDVVRERERVTKGATQGDVLVLRDLTKVYRGQRS--PAVDHLCLGIP 1843

Query:   241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
              GECFGLLG+NGAGKT+TF+M+TG   P+SG A +  H++
Sbjct:  1844 PGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNV 1883

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005548 "phospholipid transporter activity" evidence=ISO

GO:0005622 "intracellular" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0006909 "phagocytosis" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=ISO

GO:0016887 "ATPase activity" evidence=IEA

GO:0033700 "phospholipid efflux" evidence=ISO

UNIPROTKB|Q7TNJ2 Abca7 "ATP-binding cassette sub-family A member 7" [Rattus norvegicus (taxid:10116)]

 Score = 514 (186.0 bits), Expect = 4.8e-48, Sum P(2) = 4.8e-48
 Identities = 108/280 (38%), Positives = 156/280 (55%)

Query:     2 YSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSV 61
             + +D+  Y  +  +VV IFLAF+++AY++P+NLP L+ LLL YG ++ PLMYP SF FSV
Sbjct:  1609 FLWDMCNYLVAVCIVVLIFLAFQQKAYVAPENLPALLLLLLLYGWSITPLMYPASFFFSV 1668

Query:    62 PSTAFVVLGCFNXXXXXXXXXXXXXXXXXXXXXXEYVNQYLKVIFLIFPHFCLGEGLMKL 121
             PSTA+VVL C N                      + V++ LK +FLIFPHFCLG GL+ +
Sbjct:  1669 PSTAYVVLTCINLFIGINSSMATFVLELLSDQNLQEVSRILKQVFLIFPHFCLGRGLIDM 1728

Query:   122 ANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFTR 181
                   +      G +     +  W +IGKNL  M   G L+  I L ++++  +R   +
Sbjct:  1729 VRNQAMADAFERLGDKQFQSPL-RWDIIGKNLLAMVAQGPLFLLITLLLQHR--NRLLPQ 1785

Query:   182 SNPH-PVPVSLXXXXXXXXXXXXXXGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVG 240
                  P P+                GA  GDVLV++ L K+Y   +   PAV+ +  G+ 
Sbjct:  1786 PKSRLPPPLGEEDEDVVRERERVTKGATQGDVLVLRDLTKVYRGQRS--PAVDHLCLGIP 1843

Query:   241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
              GECFGLLG+NGAGKT+TF+M+TG   P+SG A +  H++
Sbjct:  1844 PGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNV 1883

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|J9P747 ABCA4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 510 (184.6 bits), Expect = 7.4e-48, Sum P(2) = 7.4e-48
 Identities = 113/280 (40%), Positives = 156/280 (55%)

Query:     2 YSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSV 61
             + +D++ Y  S+ LVV IF+ F+++AY SP+NLP L+ALL+ YG AVIP+MYP SF+F V
Sbjct:  1589 FLWDIMNYAVSAALVVGIFVGFQKKAYTSPENLPALIALLMLYGWAVIPMMYPASFLFDV 1648

Query:    62 PSTAFVVLGCFNXXXXXXXXXXXXXXXXXXXXXXEY-VNQYLKVIFLIFPHFCLGEGLMK 120
             PSTA+V L C N                          N  L+ + +IFPHFCLG GL+ 
Sbjct:  1649 PSTAYVALSCANLFIGINSSAITFILELFENNWTLLRFNAMLRKLLIIFPHFCLGRGLID 1708

Query:   121 LANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFT 180
             LA +   +     +G    + N + W +IGKNL  MA  G +Y  + L I++  F   + 
Sbjct:  1709 LALSQAVTDVYARFGEEH-STNPFQWDLIGKNLVAMAAEGVVYLLLTLFIQHHFFLTRWV 1767

Query:   181 RSNPHPVPVSLXXXXXXXXXXXXXXGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVG 240
              S P   P+                G +  D+L +  L KIY+ +  + PAV+++  GV 
Sbjct:  1768 -SEPAKEPIIDEDDDVAEERQRIISGGNKTDILRLNELTKIYSGT--SSPAVDRLCVGVR 1824

Query:   241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
              GECFGLLG+NGAGKTTTFKMLTG    TSG+A +   SI
Sbjct:  1825 PGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATIAGKSI 1864

GO:0005524 "ATP binding" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

UNIPROTKB|F1P7E4 ABCA4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 510 (184.6 bits), Expect = 8.9e-48, Sum P(2) = 8.9e-48
 Identities = 113/280 (40%), Positives = 156/280 (55%)

Query:     2 YSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSV 61
             + +D++ Y  S+ LVV IF+ F+++AY SP+NLP L+ALL+ YG AVIP+MYP SF+F V
Sbjct:  1724 FLWDIMNYAVSAALVVGIFVGFQKKAYTSPENLPALIALLMLYGWAVIPMMYPASFLFDV 1783

Query:    62 PSTAFVVLGCFNXXXXXXXXXXXXXXXXXXXXXXEY-VNQYLKVIFLIFPHFCLGEGLMK 120
             PSTA+V L C N                          N  L+ + +IFPHFCLG GL+ 
Sbjct:  1784 PSTAYVALSCANLFIGINSSAITFILELFENNWTLLRFNAMLRKLLIIFPHFCLGRGLID 1843

Query:   121 LANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFT 180
             LA +   +     +G    + N + W +IGKNL  MA  G +Y  + L I++  F   + 
Sbjct:  1844 LALSQAVTDVYARFGEEH-STNPFQWDLIGKNLVAMAAEGVVYLLLTLFIQHHFFLTRWV 1902

Query:   181 RSNPHPVPVSLXXXXXXXXXXXXXXGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVG 240
              S P   P+                G +  D+L +  L KIY+ +  + PAV+++  GV 
Sbjct:  1903 -SEPAKEPIIDEDDDVAEERQRIISGGNKTDILRLNELTKIYSGT--SSPAVDRLCVGVR 1959

Query:   241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
              GECFGLLG+NGAGKTTTFKMLTG    TSG+A +   SI
Sbjct:  1960 PGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATIAGKSI 1999

GO:0005524 "ATP binding" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

UNIPROTKB|F1PWT8 ABCA4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 510 (184.6 bits), Expect = 9.0e-48, Sum P(2) = 9.0e-48
 Identities = 113/280 (40%), Positives = 156/280 (55%)

Query:     2 YSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSV 61
             + +D++ Y  S+ LVV IF+ F+++AY SP+NLP L+ALL+ YG AVIP+MYP SF+F V
Sbjct:  1726 FLWDIMNYAVSAALVVGIFVGFQKKAYTSPENLPALIALLMLYGWAVIPMMYPASFLFDV 1785

Query:    62 PSTAFVVLGCFNXXXXXXXXXXXXXXXXXXXXXXEY-VNQYLKVIFLIFPHFCLGEGLMK 120
             PSTA+V L C N                          N  L+ + +IFPHFCLG GL+ 
Sbjct:  1786 PSTAYVALSCANLFIGINSSAITFILELFENNWTLLRFNAMLRKLLIIFPHFCLGRGLID 1845

Query:   121 LANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFT 180
             LA +   +     +G    + N + W +IGKNL  MA  G +Y  + L I++  F   + 
Sbjct:  1846 LALSQAVTDVYARFGEEH-STNPFQWDLIGKNLVAMAAEGVVYLLLTLFIQHHFFLTRWV 1904

Query:   181 RSNPHPVPVSLXXXXXXXXXXXXXXGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVG 240
              S P   P+                G +  D+L +  L KIY+ +  + PAV+++  GV 
Sbjct:  1905 -SEPAKEPIIDEDDDVAEERQRIISGGNKTDILRLNELTKIYSGT--SSPAVDRLCVGVR 1961

Query:   241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
              GECFGLLG+NGAGKTTTFKMLTG    TSG+A +   SI
Sbjct:  1962 PGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATIAGKSI 2001

GO:0005524 "ATP binding" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

ZFIN|ZDB-GENE-050517-3 abca4a "ATP-binding cassette, sub-family A (ABC1), member 4a" [Danio rerio (taxid:7955)]

 Score = 515 (186.3 bits), Expect = 9.3e-48, P = 9.3e-48
 Identities = 113/280 (40%), Positives = 157/280 (56%)

Query:     2 YSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSV 61
             + +D++ Y+ S+ +VV IF+AF ++ Y SP NL  L+ALL+ YG +V P+MYP S+IF+V
Sbjct:  1724 FFWDMINYSVSAAMVVGIFIAFDKKCYTSPGNLQALIALLMLYGWSVTPMMYPMSYIFNV 1783

Query:    62 PSTAFVVLGCFNXXXXXXXXXXXXXXXXXXXXXXEY-VNQYLKVIFLIFPHFCLGEGLMK 120
             PSTA+V L C N                       Y  NQ LK   L+FPHFCLG GL+ 
Sbjct:  1784 PSTAYVSLSCINLFIGINSSAITFILDLFDSTEALYKCNQVLKKALLVFPHFCLGRGLID 1843

Query:   121 LANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFT 180
             +A           +G    +++ ++W  +G+NLT MA  G +Y  +N+ I+Y+ F   + 
Sbjct:  1844 MAMNQAVMDVYARFGEDF-SLDPFSWDFVGENLTFMAVEGFVYFILNILIQYRFFLDHWM 1902

Query:   181 RSNPHPVPVSLXXXXXXXXXXXXXXGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVG 240
                  P P++               G  S D+L +K L K Y  +   +PAV++I  GV 
Sbjct:  1903 SDFKKP-PITDEDVDVAKERERIYKGGSSNDILQIKDLSKTYTGT--FRPAVDRICVGVS 1959

Query:   241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
              GECFGLLG+NGAGKTTTFKMLTG I  TSG A V  +SI
Sbjct:  1960 PGECFGLLGVNGAGKTTTFKMLTGDIDVTSGEADVAGYSI 1999

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F6XQY5 ABCA7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 510 (184.6 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
 Identities = 108/281 (38%), Positives = 158/281 (56%)

Query:     2 YSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSV 61
             + +D+  Y  S+ +VV IFLAF+++AY++P NLP L+ LLL YG ++ PLMYP SF+FSV
Sbjct:  1597 FLWDMCNYLVSACIVVLIFLAFQQKAYVAPANLPALLLLLLLYGWSITPLMYPASFVFSV 1656

Query:    62 PSTAFVVLGCFNXXXXXXXXXXXXXXXXXXXXXXEYVNQYLKVIFLIFPHFCLGEGLMKL 121
             PSTA+VVL C N                      + V++ LK +FL+FPHFCLG GL+ +
Sbjct:  1657 PSTAYVVLTCINLFVGINGSMATFVLELFSDKKLQDVSRVLKQVFLVFPHFCLGRGLIDM 1716

Query:   122 ANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEY--KVFSRCF 179
                   +      G       +  W ++GKNL CMA  G L+    L +++  ++  +  
Sbjct:  1717 VRNQAMADAFERLGDGQFQSPL-RWEVVGKNLVCMAVQGPLFLLFTLLLQHCNRLLPQPR 1775

Query:   180 TRSNPHPVPVSLXXXXXXXXXXXXXXGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGV 239
              RS P   P+                GA   DVLV++ L K+Y   +   PAV+++  G+
Sbjct:  1776 LRSLP---PLGEEDEDVARERERVVHGATQEDVLVLRDLTKVYHGQRT--PAVDRLCLGI 1830

Query:   240 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
               GECFGLLG+NGAGKT+TF+M+TG + P+ G A +  HS+
Sbjct:  1831 PPGECFGLLGVNGAGKTSTFRMVTGDMLPSGGEAVLAGHSV 1871

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	288
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	2e-77
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	5e-29
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	3e-23
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	2e-21
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	1e-18
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	6e-16
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	2e-15
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	2e-15
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	5e-15
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	8e-15
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	8e-15
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	4e-14
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	1e-13
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	1e-13
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	2e-13
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	3e-13
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	3e-13
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	3e-13
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	3e-13
COG1123	539	COG1123, COG1123, ATPase components of various ABC	8e-13
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	2e-12
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	2e-12
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	2e-12
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	4e-12
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	5e-12
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	6e-12
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	8e-12
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	1e-11
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	1e-11
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	1e-11
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	3e-11
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	3e-11
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	5e-11
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	6e-11
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	6e-11
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	7e-11
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	8e-11
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	2e-10
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	2e-10
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	4e-10
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	4e-10
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	5e-10
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	7e-10
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	8e-10
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	9e-10
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	9e-10
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	9e-10
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	1e-09
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	1e-09
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	2e-09
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	2e-09
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	4e-09
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	4e-09
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	4e-09
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	5e-09
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	5e-09
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	7e-09
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	9e-09
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	1e-08
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	1e-08
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	1e-08
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	1e-08
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	1e-08
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	1e-08
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	1e-08
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	2e-08
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	2e-08
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	3e-08
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	3e-08
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	3e-08
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	4e-08
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	4e-08
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	4e-08
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	4e-08
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	4e-08
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	6e-08
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	6e-08
pfam12698	278	pfam12698, ABC2_membrane_3, ABC-2 family transport	7e-08
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	8e-08
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	9e-08
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	1e-07
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	1e-07
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	2e-07
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	2e-07
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	2e-07
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	2e-07
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	2e-07
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	3e-07
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	3e-07
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	3e-07
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	3e-07
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	4e-07
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	4e-07
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	5e-07
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	5e-07
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	7e-07
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	7e-07
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	7e-07
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	8e-07
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	8e-07
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	9e-07
PRK13546	264	PRK13546, PRK13546, teichoic acids export protein	1e-06
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	1e-06
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	2e-06
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	2e-06
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	2e-06
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	3e-06
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	3e-06
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	4e-06
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	4e-06
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	4e-06
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	4e-06
COG1123	539	COG1123, COG1123, ATPase components of various ABC	5e-06
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	5e-06
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	5e-06
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	5e-06
PRK13540	200	PRK13540, PRK13540, cytochrome c biogenesis protei	5e-06
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	5e-06
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	6e-06
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	6e-06
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	7e-06
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	8e-06
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	1e-05
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	1e-05
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	1e-05
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	1e-05
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	2e-05
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	2e-05
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	2e-05
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	2e-05
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	2e-05
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	2e-05
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	2e-05
PRK13545	549	PRK13545, tagH, teichoic acids export protein ATP-	2e-05
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	2e-05
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	3e-05
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	3e-05
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	3e-05
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	4e-05
COG4987	573	COG4987, CydC, ABC-type transport system involved	4e-05
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	5e-05
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	5e-05
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	6e-05
COG4133	209	COG4133, CcmA, ABC-type transport system involved	7e-05
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	8e-05
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	8e-05
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	1e-04
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	1e-04
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	1e-04
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	1e-04
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	1e-04
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	2e-04
PRK10522	547	PRK10522, PRK10522, multidrug transporter membrane	2e-04
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	2e-04
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	3e-04
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	3e-04
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	3e-04
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	3e-04
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	3e-04
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	3e-04
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	4e-04
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	4e-04
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	4e-04
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	5e-04
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	5e-04
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	5e-04
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	5e-04
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	5e-04
COG4988	559	COG4988, CydD, ABC-type transport system involved	6e-04
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	7e-04
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	7e-04
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	8e-04
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	0.001
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	0.001
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	0.001
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	0.001
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	0.001
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	0.001
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	0.001
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	0.001
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	0.001
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	0.001
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	0.002
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	0.002
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	0.002
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	0.002
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	0.002
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	0.002
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	0.002
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	0.003
PRK13541	195	PRK13541, PRK13541, cytochrome c biogenesis protei	0.003
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	0.004
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	0.004
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	0.004

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score =  255 bits (652), Expect = 2e-77
 Identities = 129/289 (44%), Positives = 186/289 (64%), Gaps = 9/289 (3%)

Query: 2    YSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSV 61
            + +D++ Y  S+ LVV IF+ F+++AY SP+NLP LVALL+ YG AVIP+MYP SF+F V
Sbjct: 1728 FLWDIMNYAVSAGLVVGIFIGFQKKAYTSPENLPALVALLMLYGWAVIPMMYPASFLFDV 1787

Query: 62   PSTAFVVLGCFNLFVGLITTLTVTVLDNLQDD-TLEYVNQYLKVIFLIFPHFCLGEGLMK 120
            PSTA+V L C NLF+G+ ++    VL+  +++ TL   N  L+ + ++FPHFCLG GL+ 
Sbjct: 1788 PSTAYVALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPHFCLGRGLID 1847

Query: 121  LANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFT 180
            LA +   +     +G    A N + W +IGKNL  MA  G +Y  + L I++  F    +
Sbjct: 1848 LALSQAVTDVYAQFGEEHSA-NPFQWDLIGKNLVAMAVEGVVYFLLTLLIQHHFF---LS 1903

Query: 181  R--SNPHPVPVSLEEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFG 238
            R  + P   P+  E+DDV +ER+R+  G +  D+L +  L K+Y+ +  + PAV+++  G
Sbjct: 1904 RWIAEPAKEPIFDEDDDVAEERQRIISGGNKTDILRLNELTKVYSGT--SSPAVDRLCVG 1961

Query: 239  VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLV 287
            V  GECFGLLG+NGAGKTTTFKMLTG    TSG+A V   SI  ++  V
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDV 2010

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score =  109 bits (275), Expect = 5e-29
 Identities = 42/76 (55%), Positives = 51/76 (67%), Gaps = 2/76 (2%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           L ++ L K Y   K TKPAV+ +S  V +GE FGLLG NGAGKTTT KMLTG ++PTSG 
Sbjct: 1   LQIRNLTKTY--KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGT 58

Query: 273 AYVMNHSIRDSMDLVR 288
           AY+  +SIR      R
Sbjct: 59  AYINGYSIRTDRKAAR 74

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 93.2 bits (233), Expect = 3e-23
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 4/76 (5%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           + V+ L K Y      K A++ IS  V +GE +GLLG NGAGKTT  K++ G +KP SG 
Sbjct: 1   IEVRNLSKRY----GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGE 56

Query: 273 AYVMNHSIRDSMDLVR 288
             V+   I+   + V+
Sbjct: 57  IKVLGKDIKKEPEEVK 72

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 91.2 bits (227), Expect = 2e-21
 Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 3/77 (3%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           V+ V+ L K Y      K A++ +SF V  GE FGLLG NGAGKTT  K+L G +KPTSG
Sbjct: 4   VIEVRNLTKKY---GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG 60

Query: 272 NAYVMNHSIRDSMDLVR 288
              V+ + +      VR
Sbjct: 61  EILVLGYDVVKEPAKVR 77

Length = 293

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 82.0 bits (203), Expect = 1e-18
 Identities = 39/76 (51%), Positives = 44/76 (57%), Gaps = 4/76 (5%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           + V+ L K Y        AV  +SF V RGE FGLLG NGAGKTTT KMLT  +KPTSG 
Sbjct: 1   IEVENLVKKY----GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGR 56

Query: 273 AYVMNHSIRDSMDLVR 288
           A V  H +      VR
Sbjct: 57  ATVAGHDVVREPREVR 72

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 75.1 bits (185), Expect = 6e-16
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 5/86 (5%)

Query: 191 LEEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGL 250
           +E  ++ K      +    G +  +K LFK          A+  ISF + +GE  G +G 
Sbjct: 1   IEVSNLSKSYRVYSKEP--GLIGSLKSLFK---RKYREVEALKGISFTIEKGEIVGFIGP 55

Query: 251 NGAGKTTTFKMLTGAIKPTSGNAYVM 276
           NGAGKTTT K+L+G ++PTSG   V 
Sbjct: 56  NGAGKTTTLKILSGLLQPTSGEVRVA 81

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 74.3 bits (183), Expect = 2e-15
 Identities = 29/59 (49%), Positives = 37/59 (62%)

Query: 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 288
            AV+ ++F V  GE FG LG NGAGKTTT +MLT  ++PTSG A V  + +      VR
Sbjct: 7   KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVR 65

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 73.3 bits (181), Expect = 2e-15
 Identities = 30/68 (44%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           L  + L K Y      +  VN +S  V +GE  GLLG NGAGKTTTF M+ G +KP SG 
Sbjct: 1   LRAENLSKRYGK----RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGK 56

Query: 273 AYVMNHSI 280
             +    I
Sbjct: 57  ILLDGQDI 64

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 72.6 bits (179), Expect = 5e-15
 Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
            LV + L K Y      +  VN +S  V  GE  GLLG NGAGKTTTF M+ G ++P SG
Sbjct: 4   TLVAENLAKSY----KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSG 59

Length = 243

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 71.2 bits (175), Expect = 8e-15
 Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           L V+ + K +        A++ ISF V +GE FGLLG NGAGKTTT +M+ G I P SG 
Sbjct: 1   LEVENVTKRFG----RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGE 56

Query: 273 AYVMNHSI 280
                  +
Sbjct: 57  VLFDGKPL 64

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 71.2 bits (175), Expect = 8e-15
 Identities = 30/63 (47%), Positives = 39/63 (61%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           +    L K + + K T  AV+ +SF V  GE  GLLG NGAGKTTT +ML G ++P +G 
Sbjct: 2   ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61

Query: 273 AYV 275
           A V
Sbjct: 62  ATV 64

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 69.2 bits (170), Expect = 4e-14
 Identities = 24/44 (54%), Positives = 30/44 (68%)

Query: 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
            K  ++ IS  V +GE +G LG NGAGKTTT K++ G IKP SG
Sbjct: 12  KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG 55

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 68.6 bits (169), Expect = 1e-13
 Identities = 22/41 (53%), Positives = 31/41 (75%)

Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           A++ +SF V  GE  GL+G NGAGKTT F +++G ++PTSG
Sbjct: 15  ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSG 55

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 69.4 bits (170), Expect = 1e-13
 Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 5/77 (6%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           + V  L K+Y     T+ A++++SF   +G   G LG NGAGK+TT K++TG + P SG+
Sbjct: 3   IRVSSLTKLYG----TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGS 58

Query: 273 AYVMNHSI-RDSMDLVR 288
             V    + ++  ++ R
Sbjct: 59  VQVCGEDVLQNPKEVQR 75

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 68.2 bits (167), Expect = 2e-13
 Identities = 30/77 (38%), Positives = 37/77 (48%), Gaps = 9/77 (11%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           +L V  L K Y        AV  +SF    GE  GLLG NGAGKTT  +M+   + P SG
Sbjct: 1   MLEVTDLTKSY---GSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSG 57

Query: 272 NAYVMNHSIRDSMDLVR 288
              +      D +D VR
Sbjct: 58  KVTI------DGVDTVR 68

Length = 245

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 68.2 bits (167), Expect = 3e-13
 Identities = 28/45 (62%), Positives = 33/45 (73%)

Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
             K AV+ ISF V  GE FGLLG NGAGKTTTF+M+ G ++PT G
Sbjct: 13  GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEG 57

Length = 300

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 67.0 bits (164), Expect = 3e-13
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           L  K L K +      + AVN IS  V +   +GLLG NGAGK+T  KM+TG ++PTSG 
Sbjct: 1   LETKNLSKRFGK----QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGE 56

Query: 273 AYVMNH 278
                H
Sbjct: 57  IIFDGH 62

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 67.6 bits (166), Expect = 3e-13
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 209 SGDVLVVKRLFKIYANSK-----DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 263
              +L VK L K +   K         AV+ +SF +  GE  GL+G +G GK+T  +++ 
Sbjct: 1   MEPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLIL 60

Query: 264 GAIKPTSGNAYVMNHSIRD 282
           G  +PTSG        I  
Sbjct: 61  GLEEPTSGEILFEGKDITK 79

Length = 268

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 65.5 bits (161), Expect = 3e-13
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 9/79 (11%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           L ++ + K +   K    A++ +S  V RGE   LLG NGAGK+T  K+L+G  KP SG 
Sbjct: 1   LELRGITKRFGGVK----ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGE 56

Query: 273 AY-----VMNHSIRDSMDL 286
                  V   S RD+   
Sbjct: 57  ILVDGKEVSFASPRDARRA 75

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 68.0 bits (167), Expect = 8e-13
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 13/110 (11%)

Query: 182 SNP-HPVPVSL-----EEDDVRKERERVERGADSGDVLVVKRLFKIYANSKD-------T 228
           SNP HP    L        D +  R        +  +L V+ L K Y + K         
Sbjct: 244 SNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGE 303

Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278
             AV+ +SF +  GE  GL+G +G+GK+T  ++L G + P+SG+      
Sbjct: 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQ 353

Length = 539

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 18/55 (32%), Positives = 30/55 (54%)

Query: 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
            + A++ +S  +  GE   L+G NG+GK+T  + + G +KPTSG   +    I  
Sbjct: 11  GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAK 65

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 66.3 bits (162), Expect = 2e-12
 Identities = 26/51 (50%), Positives = 33/51 (64%)

Query: 221 IYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
            +   + +  AV  ISF + +GE  G LG NGAGK+TT KMLTG + PTSG
Sbjct: 29  FFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSG 79

Length = 325

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 66.0 bits (161), Expect = 2e-12
 Identities = 27/60 (45%), Positives = 34/60 (56%)

Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 288
           K  VN +SF V  GECFGLLG NGAGK+T  +M+ G   P +G   V+   +     L R
Sbjct: 54  KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLAR 113

Length = 340

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 64.1 bits (157), Expect = 4e-12
 Identities = 22/69 (31%), Positives = 39/69 (56%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           +L VK L   +     +  A++ +SF + +GE  GL+G +G+GK+T  + + G +KPTSG
Sbjct: 1   LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60

Query: 272 NAYVMNHSI 280
           +       +
Sbjct: 61  SIIFDGKDL 69

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 64.4 bits (157), Expect = 5e-12
 Identities = 27/43 (62%), Positives = 31/43 (72%)

Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           K  V+ +SF V RGECFGLLG NGAGKTTT +ML G   P +G
Sbjct: 20  KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAG 62

Length = 306

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 62.5 bits (153), Expect = 6e-12
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
           +  ++ +S  +  GE  G+LG NGAGK+T  K L G +KP+SG   +    +  
Sbjct: 12  RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLAS 65

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 63.4 bits (155), Expect = 8e-12
 Identities = 22/48 (45%), Positives = 30/48 (62%)

Query: 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
              A+  ISF + +GE  G++G NGAGK+T  K++ G  KPTSG   V
Sbjct: 39  EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKV 86

Length = 249

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           L V  L   Y      + A++ +SF V  G    LLG NGAGK+T F +LT       G 
Sbjct: 2   LEVAGLSFRYG----ARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57

Query: 273 AYVMNHSIR 281
             V  H +R
Sbjct: 58  ISVAGHDLR 66

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 62.5 bits (153), Expect = 1e-11
 Identities = 21/70 (30%), Positives = 35/70 (50%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           + +K L K Y    +   A+  +S  + +GE   ++G +G+GK+T   +L G  +PTSG 
Sbjct: 1   IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60

Query: 273 AYVMNHSIRD 282
             V    I  
Sbjct: 61  VRVDGTDISK 70

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 63.0 bits (154), Expect = 1e-11
 Identities = 25/50 (50%), Positives = 30/50 (60%)

Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
           AVN +S  V  GE  GL+G NGAGKTT F ++TG  KP+SG        I
Sbjct: 19  AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDI 68

Length = 250

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 63.3 bits (154), Expect = 3e-11
 Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 5/82 (6%)

Query: 195 DVRKERERVERGADSGDVLVVKRLFKIYAN-SKDTKPAVNQISFGVGRGECFGLLGLNGA 253
           +V KE E VE G     ++ V+ + K Y +  +    AV+ +S  V  GE FG++G +GA
Sbjct: 266 EVEKECE-VEVGEP---IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGA 321

Query: 254 GKTTTFKMLTGAIKPTSGNAYV 275
           GKTT  K++ G ++PTSG   V
Sbjct: 322 GKTTLSKIIAGVLEPTSGEVNV 343

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 61.4 bits (150), Expect = 3e-11
 Identities = 23/61 (37%), Positives = 29/61 (47%)

Query: 216 KRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
           K              A+  +SF V RGE  GL+G NGAGK+T  ++L G   P SG   V
Sbjct: 22  KLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTV 81

Query: 276 M 276
            
Sbjct: 82  R 82

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 61.9 bits (150), Expect = 5e-11
 Identities = 29/60 (48%), Positives = 35/60 (58%)

Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 288
           K  VN +SF + RGECFGLLG NGAGK+T  +ML G I P  G   V+   +     L R
Sbjct: 17  KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLAR 76

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 60.3 bits (147), Expect = 6e-11
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           L ++ L K Y   +    A++ +S  +G G  +GLLG NGAGKTT  ++L     P+SG 
Sbjct: 1   LQLENLTKRYGKKR----ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGT 55

Query: 273 AYVMNHSIRDSMDLVR 288
             +    +      +R
Sbjct: 56  IRIDGQDVLKQPQKLR 71

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 62.1 bits (152), Expect = 6e-11
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-----AYVMNHSIRDSM 284
            A++ +S  V  GE   LLG NGAGK+T  K+L+G   P SG        V   S RD++
Sbjct: 22  KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDAL 81

Query: 285 DL 286
             
Sbjct: 82  AA 83

Length = 500

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 60.7 bits (148), Expect = 7e-11
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD--SM 284
             KP ++ +SF + +GE  G+LG NG+GK+T  K L G +KP SG   +    I      
Sbjct: 13  GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPK 72

Query: 285 DLVR 288
           +L +
Sbjct: 73  ELAK 76

Length = 258

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 60.3 bits (147), Expect = 8e-11
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           + V+ L K Y N K    A+  +S  +  GE   L+G +GAGK+T  + L G ++PTSG+
Sbjct: 1   IEVENLSKTYPNGK---KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGS 57

Query: 273 AYVMNHSIR 281
             +    I 
Sbjct: 58  VLIDGTDIN 66

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 23/63 (36%), Positives = 38/63 (60%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           L V+ L  +Y   K    A+N +S  + RGE  G++G +G+GK+T  ++L G  KP+SG+
Sbjct: 4   LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63

Query: 273 AYV 275
             +
Sbjct: 64  ILL 66

Length = 252

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 59.0 bits (144), Expect = 2e-10
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 226 KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 283
              +PA++ IS  + +GE   ++G NG+GK+T  ++L G + PTSG   V    +   
Sbjct: 11  DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKL 68

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 5/73 (6%)

Query: 216 KRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
           + + K Y N    K AV+ ++  +  GE   L+G +G+GKTTT KM+   I+PTSG   +
Sbjct: 5   ENVSKRYGN----KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILI 60

Query: 276 MNHSIRDSMDLVR 288
               I D +D V 
Sbjct: 61  DGEDISD-LDPVE 72

Length = 309

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 58.2 bits (142), Expect = 4e-10
 Identities = 19/42 (45%), Positives = 23/42 (54%)

Query: 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
             +  +S  V  GE   LLG NGAGKTT  K + G + P SG
Sbjct: 14  QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSG 55

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 58.0 bits (141), Expect = 5e-10
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           ++  + L   Y      K A+  +S  + +GE   L+G NG+GK+T  K+L G +KPTSG
Sbjct: 3   MIEAENLSFRY---PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSG 59

Length = 235

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 57.5 bits (140), Expect = 7e-10
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           +L V+ L   Y        A+  +S  V RGE   LLG NGAGKTT  K + G ++P SG
Sbjct: 3   MLEVENLSAGYGKI----QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSG 58

Length = 237

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 55.9 bits (136), Expect = 8e-10
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           + ++ L K Y      K  +  IS  +  G+  GL+G NGAGK+T  K++ G ++P  G
Sbjct: 1   IELENLSKTYGG----KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG 55

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 57.7 bits (140), Expect = 9e-10
 Identities = 22/41 (53%), Positives = 25/41 (60%)

Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           AVN ++  V   E   L+G NGAGKTT F  LTG  KPT G
Sbjct: 20  AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGG 60

Length = 255

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 57.1 bits (139), Expect = 9e-10
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           L +K L K Y +      A++ +S  V  GE   LLG +G GKTT  +++ G  +P SG
Sbjct: 1   LELKGLSKTYGS----VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSG 55

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 57.2 bits (139), Expect = 9e-10
 Identities = 21/66 (31%), Positives = 39/66 (59%)

Query: 215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274
           +K + K++ ++     A+  +S  V +GE FG++G +GAGK+T  + + G  +PTSG+  
Sbjct: 4   LKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVL 63

Query: 275 VMNHSI 280
           V    +
Sbjct: 64  VDGTDL 69

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 57.1 bits (139), Expect = 1e-09
 Identities = 22/70 (31%), Positives = 33/70 (47%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           L V+ + K Y        A+  IS  V  GE   L+G +G GK+T  +++ G  +PTSG 
Sbjct: 1   LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60

Query: 273 AYVMNHSIRD 282
             V    +  
Sbjct: 61  VLVDGEPVTG 70

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           ++ VK L K Y        A+  ++  + +GE   ++G +GAGK+T  + L G + PTSG
Sbjct: 3   MIEVKNLSKTYPGGH---QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSG 59

Query: 272 NAYVMNHSI 280
                   I
Sbjct: 60  EILFNGVQI 68

Length = 258

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           + ++ + K Y        A++ +S  +  GE F LLG +G GKTT  +++ G   PTSG 
Sbjct: 1   IELENVSKFY----GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGE 56

Query: 273 AYVMNHSI 280
             +    I
Sbjct: 57  ILLDGKDI 64

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 57.2 bits (138), Expect = 2e-09
 Identities = 19/47 (40%), Positives = 31/47 (65%)

Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
           K  VN     + +GE F ++GL+G+GK+TT +ML   I+PT+G  ++
Sbjct: 6   KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFI 52

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 55.2 bits (134), Expect = 4e-09
 Identities = 21/47 (44%), Positives = 29/47 (61%)

Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
            P +  +SF V  GE   ++G NGAGK+T  K + G +KPTSG+  V
Sbjct: 12  HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 55.7 bits (135), Expect = 4e-09
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
             VN +S  V  GE F ++GL+G+GK+T  + +   I+PTSG   +
Sbjct: 38  VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLI 83

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           ++ ++ L   Y      +P +  +S  +  GE  GL+G NGAGK+T  K+L G ++P SG
Sbjct: 3   MITLENLSLAY----GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSG 58

Query: 272 N 272
            
Sbjct: 59  E 59

Length = 530

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 56.5 bits (137), Expect = 5e-09
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 192 EEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLN 251
           EE      R           VL  + + K Y      +  +  +SF + RG+   ++G N
Sbjct: 301 EEGKPLAFRFPPPGKRLGKLVLEFENVSKGY---DGGRLLLKDLSFRIDRGDRIAIVGPN 357

Query: 252 GAGKTTTFKMLTGAIKPTSG 271
           GAGK+T  K+L G + P SG
Sbjct: 358 GAGKSTLLKLLAGELGPLSG 377

Length = 530

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 56.4 bits (137), Expect = 5e-09
 Identities = 21/45 (46%), Positives = 27/45 (60%)

Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
           A + +S  V +GE   LLG NGAGK+T  K+L G  +P SG   V
Sbjct: 19  ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRV 63

Length = 501

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
            L ++ + K +        AV+ IS  + +GE   LLG +G GKTT  +M+ G  +P+SG
Sbjct: 5   ALEIRNVSKSF----GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60

Length = 352

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 54.6 bits (132), Expect = 9e-09
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           +L V+ L K+Y N K    A+  I+  +  GE   ++G +GAGK+T  + +   ++P+SG
Sbjct: 1   MLEVENLSKVYPNGKQ---ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSG 57

Query: 272 NAYVMNHSIRD 282
           +  +    I  
Sbjct: 58  SILLEGTDITK 68

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 215  VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274
            VK L KI+  S   +PAV++++      +    LG NGAGKTTT  +LTG + PTSG   
Sbjct: 931  VKNLVKIFEPSG--RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVL 988

Query: 275  VMNHSIRDSMDLVR 288
            V    I  ++D VR
Sbjct: 989  VGGKDIETNLDAVR 1002

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 226 KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 285
              K AVN ++  + +GE   L+G +G+GKTTT KM+   I+PTSG  ++    IR+  D
Sbjct: 11  GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIRE-QD 69

Query: 286 LVR 288
            V 
Sbjct: 70  PVE 72

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
             +P +  IS  V +GE   L+G NGAGK+T  K + G +KP+SG   +    +R 
Sbjct: 15  GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRK 70

Length = 254

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 225 SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281
            ++ K  +  +S+ V  GE + ++G NGAGKTT   +LTG   P+SG+  ++     
Sbjct: 40  RRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFG 96

Length = 257

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 53.3 bits (129), Expect = 1e-08
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           L +K + K Y      K  +N +S  +  GE   LLG +G+GK+T  + + G  +P SG+
Sbjct: 1   LELKNVSKRYGQ----KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGS 56

Query: 273 AYV 275
             +
Sbjct: 57  ILI 59

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 53.7 bits (130), Expect = 1e-08
 Identities = 19/71 (26%), Positives = 36/71 (50%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           ++ +K + KIY    +   A+  ++  +  GE   ++G +G+GK+T   +L G  KPTSG
Sbjct: 1   MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60

Query: 272 NAYVMNHSIRD 282
              +    +  
Sbjct: 61  EVLINGKDLTK 71

Length = 226

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 18/51 (35%), Positives = 27/51 (52%)

Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281
           A+N +S  V  GE   ++G NGAGKTT   ++TG  +P  G+       + 
Sbjct: 17  ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLT 67

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 10/76 (13%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
            L V+RL       K  KP +  ISF +  GE  G++G +G+GK+T  ++L G   PTSG
Sbjct: 334 ALSVERLTAAPPGQK--KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSG 391

Query: 272 NAYVMNHSIR-DSMDL 286
                  S+R D  DL
Sbjct: 392 -------SVRLDGADL 400

Length = 580

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           ++F   RGE   LLG NGAGK+T    L G ++P SG
Sbjct: 11  LNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSG 47

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 52.0 bits (126), Expect = 3e-08
 Identities = 18/56 (32%), Positives = 29/56 (51%)

Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
             KP +  +S  +  GE   ++G +G+GK+T  K+L     PTSG   +    +RD
Sbjct: 13  RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRD 68

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 222 YANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI- 280
           ++       A+  +SF +  GE   +LG NG+GK+T  K+LTG +KP SG   +   +I 
Sbjct: 15  FSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITIS 74

Query: 281 RDSMDLVR 288
           ++++  +R
Sbjct: 75  KENLKEIR 82

Length = 271

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 16/86 (18%)

Query: 210 GD-VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 268
           GD V+  + L K +      K  ++ +SF +  G   G++G NGAGK+T F+M+TG  +P
Sbjct: 319 GDKVIEAENLSKGF----GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP 374

Query: 269 TSGN---------AYVMNHSIRDSMD 285
            SG          AYV     RD++D
Sbjct: 375 DSGTIKIGETVKLAYV--DQSRDALD 398

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           L +K + K + +       +  ++  +  GE   LLG +G GK+T  +M+ G  +PTSG 
Sbjct: 4   LELKNVRKSFGS----FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59

Query: 273 AYVMNHSIRD 282
             +    + D
Sbjct: 60  ILIDGRDVTD 69

Length = 338

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 53.6 bits (130), Expect = 4e-08
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 11/59 (18%)

Query: 236 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN---------AYVMNHSIRDSMD 285
           SF +  G   G++G NGAGK+T FKM+TG  +P SG          AYV     RD++D
Sbjct: 344 SFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQS--RDALD 400

Length = 556

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274
           VK L   Y      K  +N +SF V +GE   ++G NG+GK+TT +++ G ++  SG   
Sbjct: 7   VKNLTFKY-KEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQII 65

Query: 275 VMNH 278
           +   
Sbjct: 66  IDGD 69

Length = 279

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 52.6 bits (127), Expect = 4e-08
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT 269
             +L ++ + K +         +  I+  V +GE   +LG +G GK+T  +++ G  KPT
Sbjct: 1   MALLEIEGVSKSFG----GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT 56

Query: 270 SGNAYVMN 277
           SG   +  
Sbjct: 57  SGEVLLDG 64

Length = 248

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           + ++ + K +        A++ ++  +  GE   LLG +G GKTTT +M+ G  +PTSG 
Sbjct: 1   VELENVTKRF----GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGR 56

Query: 273 AYV 275
            Y+
Sbjct: 57  IYI 59

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 51.1 bits (123), Expect = 6e-08
 Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           L V+ +   Y  ++   P +  +SF +  GE   ++G +G+GK+T  +++ G ++PTSG
Sbjct: 1   LEVENVSFRYPGAE--PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG 57

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 52.5 bits (127), Expect = 6e-08
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 216 KRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
           K + K++     T  A+N +S  +  GE FG++G +GAGK+T  + +    +PTSG   V
Sbjct: 5   KNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLV 64

Length = 343

>gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 13/128 (10%)

Query: 5   DLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSVPST 64
           DLL       +++ +         I   NL  L+ L L YG A I L      +F     
Sbjct: 147 DLLVGLIQLLIILLLLFGL----GIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEA 202

Query: 65  AFVVLGCFNLFVGLITTLTVTVLDNLQDDTLEYVNQYLKVIFLIFPHFCLGEGLMKLANT 124
           A +V+    L +                  L  +  +L+ IF I P F   +GL+++   
Sbjct: 203 AILVISILILLLSGFFGGLF---------PLPNMPSFLQWIFSIIPFFAPIDGLLRIIYG 253

Query: 125 YWTSSFAN 132
                  +
Sbjct: 254 DLAEILLS 261

This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 51.7 bits (125), Expect = 8e-08
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
           +  ++ +S  +  GE   +LG NGAGK+T  + L+G + P SG   +    + D
Sbjct: 15  RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLAD 68

Length = 258

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 52.2 bits (126), Expect = 9e-08
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           +L VK L   +        AV+ +SF + +GE  G++G +G+GK+   K + G +     
Sbjct: 1   LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPK--P 58

Query: 272 NAYVMNHSIR-DSMDLVR 288
           NA ++   I  D  DL+ 
Sbjct: 59  NARIVGGEILFDGKDLLS 76

Length = 316

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 212 VLVVKRLFKIYANS-----KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 266
           +L V+ +   Y        K   P +  +S  +  GE  GLLG +G GK+T  ++L G  
Sbjct: 2   LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE 61

Query: 267 KPTSGN 272
           KP  G 
Sbjct: 62  KPAQGT 67

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 216 KRLFKIYANSKDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 273
           K +   Y +++++  K A++ ++  V +GE   +LG NG+GK+T  K +   + P+ G  
Sbjct: 8   KNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKV 67

Query: 274 YVMNHSIRDSMDL 286
           YV      D  +L
Sbjct: 68  YVDGLDTSDEENL 80

Length = 280

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 22/53 (41%), Positives = 33/53 (62%)

Query: 226 KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278
           + T  AV  +SF +  G+   ++G NG+GK+T  KML G I+PTSG   + +H
Sbjct: 23  RQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDH 75

Length = 267

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 220 KIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 279
           K Y   +    A+  +SF + +GE   L G +GAGK+T  K++ G  +PT G   V  H 
Sbjct: 9   KAYPGGR---EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHD 65

Query: 280 I 280
           +
Sbjct: 66  L 66

Length = 223

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 18/67 (26%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 215 VKRLFKIYANSKDTKP-AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 273
           ++ + K +  +      A++ +S  + +GE FG++G +GAGK+T  +++    +PTSG+ 
Sbjct: 4   LENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV 63

Query: 274 YVMNHSI 280
           +V    +
Sbjct: 64  FVDGQDL 70

Length = 339

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 22/51 (43%), Positives = 29/51 (56%)

Query: 221 IYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           +  +  D   A+  I+F   +GE   LLG NGAGK+T F    G +KPTSG
Sbjct: 7   LKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSG 57

Length = 275

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 222 YANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281
           Y N +   PA++ +S  +  GE   ++G  G+GK+T  K+L G  KPTSG+  +    IR
Sbjct: 12  YPNQE--IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIR 69

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           A++ ISF    G+   L+G NGAGK+T  K+L+G  +P +G+
Sbjct: 19  ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGS 60

Length = 501

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
            L  K L K Y   +     V  +S  V  GE  GLLG NGAGKTTTF M+ G +   +G
Sbjct: 3   TLTAKNLAKAYKGRR----VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAG 58

Query: 272 NAYVMNHSI 280
           N  + +  I
Sbjct: 59  NIIIDDEDI 67

Length = 241

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 288
           A+N +SF V  GE   L+G NGAGKTT   ++TG  +P  G             DL +
Sbjct: 20  ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLF-----DGDTDLTK 72

Length = 249

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 208 DSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 267
              +++ V+ +   Y ++     A+  +SF V  GE   ++G NG+GK+T  K+L G + 
Sbjct: 1   MKEEIIRVEHISFRYPDAA--TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL 58

Query: 268 PTSG 271
           P +G
Sbjct: 59  PEAG 62

Length = 279

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 288
           P +  +S  V  GEC  L G +GAGK+T  K L     P SG   V  H     +DL +
Sbjct: 22  PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILV-RH-EGAWVDLAQ 78

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 288
            VN  S  V  GE F ++GL+G+GK+T  ++L   I+PT G   V      D  D+ +
Sbjct: 43  GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILV------DGKDIAK 94

Length = 386

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 49.4 bits (118), Expect = 5e-07
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278
           AV  +SF +  G+   ++G NG+GK+T  KML G I+PTSG   + +H
Sbjct: 28  AVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDH 75

Length = 267

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 50.2 bits (121), Expect = 5e-07
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR--DSM 284
              PA++ +S  +  GE   ++G  G+GK+T  K+L G  +PT G+  +    IR  D  
Sbjct: 476 QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPA 535

Query: 285 DLVR 288
           DL R
Sbjct: 536 DLRR 539

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 49.8 bits (119), Expect = 7e-07
 Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 4/60 (6%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           +L ++ L K +    D + AV+ +S  + +GE F LLG +G GK+T  +ML G  +PT+G
Sbjct: 19  LLEIRNLTKSF----DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAG 74

Length = 377

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 49.0 bits (117), Expect = 7e-07
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 218 LFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277
           L   Y+ SK+   A+N I+F   R     ++G NGAGK+T F+   G +KPTSG+  +  
Sbjct: 9   LCYSYSGSKE---ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRG 65

Query: 278 HSI 280
             I
Sbjct: 66  EPI 68

Length = 277

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 8/59 (13%)

Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DSMDL 286
           KP +  ISF +  GE   ++G +G+GK+T  +++ G   PTSG       S+R D  DL
Sbjct: 331 KPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG-------SVRLDGADL 382

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 49.4 bits (118), Expect = 8e-07
 Identities = 20/49 (40%), Positives = 29/49 (59%)

Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 279
           A+  ++  V  GE   LLG NGAGK+T  K+L+G  +PT G   + N +
Sbjct: 20  ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNIN 68

Length = 510

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 47.8 bits (115), Expect = 8e-07
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 8/70 (11%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           VL V+ L          K AV  +SF V  GE  G+ GL G G+T   + L G   P SG
Sbjct: 4   VLEVRGL--------SVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASG 55

Query: 272 NAYVMNHSIR 281
              +    + 
Sbjct: 56  EITLDGKPVT 65

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 48.3 bits (116), Expect = 9e-07
 Identities = 14/48 (29%), Positives = 26/48 (54%)

Query: 235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
           +   V RGE   ++G +G+GK+T  +++ G ++P SG   +    I  
Sbjct: 19  VDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISG 66

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 13/71 (18%)

Query: 215 VKRLFKIYANSKD-------------TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKM 261
           V + ++IY  +K+             T  A++ IS     G+  GL+G+NG+GK+T   +
Sbjct: 10  VTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNI 69

Query: 262 LTGAIKPTSGN 272
           + G++ PT G 
Sbjct: 70  IGGSLSPTVGK 80

Length = 264

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 222 YANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           +  +   K A+N +S  +  G+   ++G NGAGK+T    + G +KPTSG
Sbjct: 12  FKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61

Length = 263

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query: 217 RLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           R+  I  + K     ++ +S  +  GE   L G NGAGKTT  K+L G IK +SG
Sbjct: 1   RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG 55

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 283
            A++ IS  +  GE   LLG +GAGK+T  +++ G   P +G   +    + D 
Sbjct: 16  GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDV 69

Length = 345

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 21/70 (30%), Positives = 34/70 (48%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           +L  + L K Y   K     +  +S  +G+GE   ++G +G+GK+T   +L G   PTSG
Sbjct: 1   LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60

Query: 272 NAYVMNHSIR 281
                  S+ 
Sbjct: 61  EVLFNGQSLS 70

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 16/46 (34%), Positives = 22/46 (47%)

Query: 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
           P +  +S  V  GEC  L G +G+GK+T  + L     P  G   V
Sbjct: 25  PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILV 70

Length = 235

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 226 KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
            D  P +  IS  +  GE   L+G +G+GK+T   ++       SG   +  H +RD
Sbjct: 12  GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRD 68

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 46.7 bits (112), Expect = 4e-06
 Identities = 17/41 (41%), Positives = 22/41 (53%)

Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
            +  +S  V +GE   +LG NG GKTT  K L G +   SG
Sbjct: 15  ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG 55

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 46.9 bits (111), Expect = 4e-06
 Identities = 20/59 (33%), Positives = 32/59 (54%)

Query: 217 RLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
           RL  +  +  D  PA+  I+  + +GE  G++G NG+GK+T    L G ++P  G   V
Sbjct: 3   RLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV 61

Length = 274

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 20/44 (45%), Positives = 28/44 (63%)

Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           KP    IS   G G  +GL+G NG GK+T  K+L G ++P++GN
Sbjct: 14  KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGN 57

Length = 530

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 7/93 (7%)

Query: 203 VERGADSGDVLVVKRLFKI------YANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKT 256
            E+  D   + + K   +I      +    D  P +  +S  +  GE   ++G +G+GK+
Sbjct: 454 PEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKS 513

Query: 257 TTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVR 288
           T  K+L G  KP  G   +    + D  +  +R
Sbjct: 514 TLLKLLLGLYKPQQGRILLDGVDLNDIDLASLR 546

Length = 709

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 20/56 (35%), Positives = 29/56 (51%)

Query: 209 SGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 264
              +L V+ L   +A      PAV  +SF V  GE  G++G +G+GK+T    L G
Sbjct: 2   MSPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMG 57

Length = 539

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           +    + K Y N      A++ I+  +  GE   L+G +GAGK+T  K++     PTSG
Sbjct: 1   IEFINVTKTYPN---GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSG 56

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
             E  G+LG NG GKTT  KML G +KP  G+  +   ++
Sbjct: 24  ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV 63

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 46.7 bits (111), Expect = 5e-06
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS 270
           +++  K +   Y +SK  KPA+N ISF + RG    L+G NG+GK+T  K++ G + P  
Sbjct: 4   NIVEFKHVSFTYPDSK--KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDD 61

Query: 271 GNAYVMN 277
                + 
Sbjct: 62  NPNSKIT 68

Length = 282

>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional

 Score = 46.1 bits (109), Expect = 5e-06
 Identities = 21/53 (39%), Positives = 28/53 (52%)

Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281
           +P + QISF +  G    L G NGAGKTT  K++ G + P  G       SI+
Sbjct: 14  QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIK 66

Length = 200

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 288
           +  +  +S  + +GE   LLG +G+GK+T  ++LTG +KP  G   +    + D    + 
Sbjct: 15  QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALS 74

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
           D K  V   S  V RG+   L+G NG GKTT  K++ G ++  SG  + 
Sbjct: 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC 378

Length = 635

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 45.7 bits (109), Expect = 6e-06
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 220 KIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 279
           K Y        A++ +S  + +GE   L G +GAGKTT  K+L GA+ P+ G   +    
Sbjct: 9   KAYPGGV---AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGED 65

Query: 280 I 280
           +
Sbjct: 66  V 66

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 22/53 (41%), Positives = 32/53 (60%)

Query: 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
           + P VN +SF + +GE  G+ GL GAG+T   K+L GA+  TSG   +  H +
Sbjct: 264 SGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEV 316

Length = 501

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 46.0 bits (109), Expect = 8e-06
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 224 NSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           N  D   A+  I+  + +GE   +LG NGAGK+T F+ L G +KP+SG
Sbjct: 14  NYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSG 61

Length = 283

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 13/97 (13%)

Query: 195 DVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAG 254
           ++               VL V+ L             V  +SF V  GE  G+ GL GAG
Sbjct: 246 ELEDLFPEPPEEGIGEPVLEVRNL--------SGGGKVRDVSFTVRAGEILGIAGLVGAG 297

Query: 255 KTTTFKMLTGAIKPTSGNAY-----VMNHSIRDSMDL 286
           +T   + L GA   +SG        V   S RD++  
Sbjct: 298 RTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334

Length = 500

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 264
           A++ +S  V  GE   L G NGAGK+T  K+L+G
Sbjct: 20  ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG 53

Length = 506

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 233 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
           + +   V RGE   +LG +G+GK+T  +++ G ++P  G   +    I  
Sbjct: 25  DGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQ 74

Length = 263

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
           K A++ ++  +  GE  GL+G  G+GK+T  + L G +KPTSG   +    I D
Sbjct: 20  KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITD 73

Length = 287

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 230 PAVNQ-ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           P + + ISF V  GE  GL GL GAG++   K+L GA + T+G
Sbjct: 266 PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAG 308

Length = 501

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 18/31 (58%), Positives = 20/31 (64%)

Query: 241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
            GE  G+LG NG GKTT  K+L G IKP  G
Sbjct: 366 DGEVIGILGPNGIGKTTFVKLLAGVIKPDEG 396

Length = 591

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 17/46 (36%), Positives = 25/46 (54%)

Query: 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
             ++ +   V  G   GL+G NGAGKTT  + + G + PT+G   V
Sbjct: 17  TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLV 62

Length = 402

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 18/39 (46%), Positives = 21/39 (53%)

Query: 237 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
               +GE  GLLG NGAGKTT  + + G I P  G   V
Sbjct: 1   LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKV 39

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 20/66 (30%), Positives = 33/66 (50%)

Query: 208 DSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 267
           D+ DVL V+ L   +   +    AV  +SF + RGE   ++G +G+GK+ T   L   ++
Sbjct: 8   DARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE 67

Query: 268 PTSGNA 273
              G  
Sbjct: 68  QAGGLV 73

Length = 623

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 24/95 (25%)

Query: 191 LEEDDVR------KERERVERGADSGDVLV-----VKRL--FKIYANSKDTKPAVNQISF 237
           L E+++R      +  ER  R     + LV      K+L  F +            +I  
Sbjct: 312 LPEENMRIRPEPIEFEERPPRDESERETLVEYPDLTKKLGDFSLEVEG-------GEIY- 363

Query: 238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
               GE  G++G NG GKTT  K+L G +KP  G 
Sbjct: 364 ---EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGE 395

Length = 590

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           L V+ L K +   K     +  +S  V RG+ F +LG  G+GK+   + + G IKP SG
Sbjct: 1   LKVENLSKDWKEFK-----LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSG 54

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           A+N ISF V  GE  G++GLNG+GK+T   ++ G   P  G
Sbjct: 39  ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKG 79

Length = 549

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
           ++ +S  +  GE   +LG NGAGK+T  K L+G + P SG   +    +
Sbjct: 17  LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPL 65

Length = 259

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 209 SGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 268
               +VV  +   + N      A+   SF V  G    L+G+NG+GK+T FK L G ++ 
Sbjct: 3   QQAGIVVNDVTVTWRNGHT---ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL 59

Query: 269 TSGNAYVMNHSIRDSM 284
            SG   ++    R ++
Sbjct: 60  ASGKISILGQPTRQAL 75

Length = 272

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 18/56 (32%), Positives = 31/56 (55%)

Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
           D    +  +SF + +G+   ++G NG+GK+T  K++ G  K  SG  +  N +I D
Sbjct: 20  DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITD 75

Length = 269

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 17/47 (36%), Positives = 23/47 (48%)

Query: 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274
               +N IS  V  GE   + G +G GK+T  K++   I PTSG   
Sbjct: 15  DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61

Length = 223

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           + V+ + K + +      A++ +S  +  GE   LLG +G+GKTT  +++ G  +P SG 
Sbjct: 3   IEVRNVSKRFGDF----VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGT 58

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 198 KERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTT 257
           +     E+ A +G  L ++ +   Y   +    A+   +  + +GE   +LG +G+GK+T
Sbjct: 322 EVTFPDEQTATTGQALELRNVSFTYPGQQ--TKALKNFNLTLAQGEKVAILGRSGSGKST 379

Query: 258 TFKMLTGAIKPTSGN 272
             ++L GA  P  G+
Sbjct: 380 LLQLLAGAWDPQQGS 394

Length = 573

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           L V+ L K +    D  P    ++  +  GE   ++G NG GKTT  + L G ++P SG
Sbjct: 320 LEVENLTKGF----DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSG 374

Length = 530

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           L  + L    A S+  +     +SF +  GE   + G NG GKTT  ++L G ++P SG
Sbjct: 1   LAARNL----ACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSG 55

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           +L V  L K Y   K        +SF +  GE  G++G +G+GK+T    L G + P  G
Sbjct: 3   LLQVSGLSKSYGGGK----GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHG 58

Query: 272 NAYVMNHS 279
            A  +  S
Sbjct: 59  TATYIMRS 66

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 18/56 (32%), Positives = 30/56 (53%)

Query: 233 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 288
           + +SF +  GE   + G NGAGKTT  ++L G ++P +G  Y     I++  +   
Sbjct: 19  SDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYH 74

Length = 209

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 19/50 (38%), Positives = 27/50 (54%)

Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
           A+  IS  V +GE   LLG +G GKTT  +++ G  + T+G  Y     I
Sbjct: 19  ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDI 68

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 42.2 bits (99), Expect = 8e-05
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 9/50 (18%)

Query: 239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 288
           V  GE  G++G NG GKTT  K+L G + P   N         D  D + 
Sbjct: 22  VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDN---------DEWDGIT 62

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 19/45 (42%), Positives = 27/45 (60%)

Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
             +PA+  +SF V  GE   L+G +GAGK+T   +L G + PT G
Sbjct: 333 GRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEG 377

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274
           V+ L   Y   KD   A+  +S  +  G    LLG NGAGK+T    L G   P  G   
Sbjct: 7   VEDLHFRY---KDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63

Query: 275 VMNHSI 280
           VM   +
Sbjct: 64  VMGREV 69

Length = 274

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 16/47 (34%), Positives = 26/47 (55%)

Query: 225 SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
            +D +   + +SF +  GE   + G NG+GKTT  ++L G   P +G
Sbjct: 9   ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAG 55

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 7/82 (8%)

Query: 193 EDDVRKERER---VERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLG 249
           ED V   R+    ++ G   G V      F  Y NS+     V  +SF    G+   ++G
Sbjct: 313 EDAVPDVRDPPGAIDLGRVKGAVEFDDVSFS-YDNSR---QGVEDVSFEAKPGQTVAIVG 368

Query: 250 LNGAGKTTTFKMLTGAIKPTSG 271
             GAGK+T   +L     P SG
Sbjct: 369 PTGAGKSTLINLLQRVFDPQSG 390

Length = 588

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 17/69 (24%), Positives = 32/69 (46%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           ++ V  L K     +     +  +   V RGE   ++G +G+GK+T   +L G   P+SG
Sbjct: 6   IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSG 65

Query: 272 NAYVMNHSI 280
              ++   +
Sbjct: 66  EVRLLGQPL 74

Length = 228

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 192 EEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLN 251
           E+D   +  ER       GDV      F+ Y      +PA++ IS  +  GE   L+G +
Sbjct: 316 EKDTGTRAIERAR-----GDVEFRNVTFR-YPG--RDRPALDSISLVIEPGETVALVGRS 367

Query: 252 GAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
           G+GK+T   ++    +P SG   +  H + D
Sbjct: 368 GSGKSTLVNLIPRFYEPDSGQILLDGHDLAD 398

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 18/45 (40%), Positives = 27/45 (60%)

Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
           +V  I+  + RGE   L+G NG+GK+T   +LTG  +P SG   +
Sbjct: 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382

Length = 547

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           A++++S  + +GE   L+G NGAGKTT    L G  + TSG 
Sbjct: 20  ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGR 61

Length = 237

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 217 RLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           ++ K+ A   D +  ++ I   +  G   GLLG NGAGK+T  K+L G + P SG
Sbjct: 314 KMEKVSAGYGD-RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSG 367

Length = 638

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 21/54 (38%), Positives = 30/54 (55%)

Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
           KP +  ISF +  GE   ++G +G+GK+T  K+L     PTSG   +    IRD
Sbjct: 342 KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRD 395

Length = 567

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
           V  I+  + RGE   L+G NG+GK+T   +LTG  +P SG   +
Sbjct: 339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382

Length = 546

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           +L V  L K+Y   K        +SF +  GE  G++G +G+GKTT  K ++G + P +G
Sbjct: 6   LLSVSGLSKLYGPGK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG 61

Query: 272 N-AYVM 276
              Y M
Sbjct: 62  TVTYRM 67

Length = 258

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           +L    L K Y         ++ +SF +G GE   ++G +G+GK+T   +L G   PTSG
Sbjct: 5   LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSG 64

Length = 233

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274
           +  + K++     T  A+N +S  V  G+ +G++G +GAGK+T  + +    +PTSG+  
Sbjct: 4   LSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVI 63

Query: 275 V 275
           V
Sbjct: 64  V 64

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 19/54 (35%), Positives = 26/54 (48%)

Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
           KP +  I+F +  GE   ++G  GAGKTT   +L     P  G   +    IRD
Sbjct: 16  KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRD 69

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 17/50 (34%), Positives = 25/50 (50%)

Query: 225 SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274
           S D K  ++ +   +  GE   LLG +G GKTT  +++ G   P SG   
Sbjct: 23  SFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIM 72

Length = 375

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 18/57 (31%), Positives = 28/57 (49%)

Query: 225 SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281
           S++ +P    + F V  GE   + G NGAGKTT  ++L G +   SG   +   +  
Sbjct: 20  SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTAT 76

Length = 214

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 17/47 (36%), Positives = 27/47 (57%)

Query: 225 SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           S   +  V+ +      G   GLLG NG+GK+T  ++L GA++P +G
Sbjct: 10  SAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAG 56

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           ++ +S  +  G+   LLG NGAGK+T  +++ G + P  G
Sbjct: 20  LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG 59

Length = 251

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query: 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           PA++ ++  V  GE   L+G +GAGK+T F++L     P SG
Sbjct: 354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSG 395

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 264
           A++ I   V  GEC GL G NGAGK+T  K+L+G
Sbjct: 16  ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG 49

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           +N +S  +  GE   LLG +G GK+T  ++L G   P+ GN
Sbjct: 28  LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGN 68

Length = 268

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 21/66 (31%), Positives = 34/66 (51%)

Query: 217 RLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 276
            L  +     D KPA++ ++  +  G+   L+G +GAGK+T   +L G + PT G   V 
Sbjct: 322 SLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVN 381

Query: 277 NHSIRD 282
              +RD
Sbjct: 382 GIDLRD 387

Length = 559

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 40.6 bits (96), Expect = 7e-04
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
            G+  G+LG NG GKTT  K+L+G + P  G+
Sbjct: 98  EGKVTGILGPNGIGKTTAVKILSGELIPNLGD 129

Length = 590

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 39.8 bits (94), Expect = 7e-04
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 234 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
            +SF +  GE   + G NGAGKT+  ++L G  +P +G
Sbjct: 19  GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAG 56

Length = 204

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 8/88 (9%)

Query: 196 VRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGK 255
            + ++E  +R   S D  +      +        P +  I+  + +GE   + G  G+GK
Sbjct: 22  EKAKQENNDRKHSSDDNNLFFSNLCLVGA-----PVLKNINLKIEKGEMLAITGSTGSGK 76

Query: 256 TTTFKMLTGAIKPTSGNAYVMNHSIRDS 283
           T+   ++ G ++P+ G    + HS R S
Sbjct: 77  TSLLMLILGELEPSEG---KIKHSGRIS 101

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 225 SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
           S+D K  V  ISF V RGE  G  GL G+G+T     L G  K   G   +
Sbjct: 273 SRDRK-KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRL 322

Length = 510

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 39.0 bits (92), Expect = 0.001
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 13/72 (18%)

Query: 224 NSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-------AYV- 275
             ++T   +  I+  V +GE   ++G  G+GK++    L G ++  SG+       AYV 
Sbjct: 13  GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVS 72

Query: 276 -----MNHSIRD 282
                 N +IR+
Sbjct: 73  QEPWIQNGTIRE 84

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           I F +  GE   LLG NGAGK+T  K++ G + P SG
Sbjct: 30  IDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSG 66

Length = 510

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 14/41 (34%), Positives = 25/41 (60%)

Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           A++ ++  V  G    LLG +G+GK+T  +++ G  +P SG
Sbjct: 15  ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSG 55

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           L +  L+  Y      KPA+  I+  +  GE   +LG +G GKTT   ++ G +    G
Sbjct: 2   LQISHLYADYGG----KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHG 56

Length = 255

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 281
             K A+  IS  + +GE   L+G +G GK+T  ++L          P  G   +    I 
Sbjct: 11  GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIY 70

Query: 282 D 282
           D
Sbjct: 71  D 71

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT 269
           AV+ IS  + RG+  GL+G +G+GK+T    L   I   
Sbjct: 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340

Length = 534

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
           D    ++ IS  +  GE  G++G +G+GK+T  K++     P +G   V  H +
Sbjct: 13  DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDL 66

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 288
            V   S  +  GE F ++GL+G+GK+T  ++L   I+PT G   +      D +D+ +
Sbjct: 43  GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLI------DGVDIAK 94

Length = 400

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 38.9 bits (90), Expect = 0.001
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           +L V+ L   Y    D    +N +SF + +GE   ++G NG+GK+TT +++ G  +   G
Sbjct: 4   ILEVENLVFKYEKESDVN-QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEG 62

Length = 277

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSG 271
           D K  +  ISF +  GE  G+LG +GAGK+    +L G    +PTSG
Sbjct: 11  DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSG 57

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
            G+  G+LG NG GK+T  K+L G +KP  G 
Sbjct: 99  PGKVVGILGPNGIGKSTALKILAGELKPNLGR 130

Length = 591

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 208 DSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 267
           + GDV++  R    +      +  V+ +SF + RGE  G+ GL GAG+T   + L GA  
Sbjct: 252 EIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP 311

Query: 268 PT-SGNAYVMNH--SIRDSMDLVR 288
               GN ++      IR+    +R
Sbjct: 312 GKFEGNVFINGKPVDIRNPAQAIR 335

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           L V+ L K+Y   K        +SF +  GE  G++G +G+GKTT    L+  + P +G 
Sbjct: 7   LSVRGLTKLYGPRK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGE 62

Query: 273 A-YVMNH 278
             Y M  
Sbjct: 63  VHYRMRD 69

Length = 258

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 234 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
            +SF +  GE   L G NG+GKTT  +++ G + P +G 
Sbjct: 20  GLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGT 58

Length = 207

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 13/62 (20%)

Query: 225 SKDTKPAVNQISFGV-GR------------GECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
             DT  A+  +SF V GR            G+  GL+G NG+GK+T  KML     P+ G
Sbjct: 7   HSDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEG 66

Query: 272 NA 273
             
Sbjct: 67  EI 68

Length = 265

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 15/56 (26%), Positives = 28/56 (50%)

Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
            TK  ++ +S  + +G    ++G NGAGK+T   M++  +K  SG   +    +  
Sbjct: 12  GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTS 67

Length = 252

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS 270
           + +V+K + K + ++      ++ ++  + +G    LLG +G GKTT  +++ G  KPT 
Sbjct: 5   NFVVLKNITKRFGSNT----VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTE 60

Query: 271 GNAY-----VMNHSI--RD 282
           G  +     V + SI  RD
Sbjct: 61  GQIFIDGEDVTHRSIQQRD 79

Length = 351

>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 14/32 (43%), Positives = 22/32 (68%)

Query: 249 GLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
           G NG GK++  +M+ G ++P+SGN Y  N +I
Sbjct: 33  GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNI 64

Length = 195

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 265
           V+ +SF + RGE  G+ GL GAG+T   + L GA
Sbjct: 278 VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGA 311

Length = 506

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 14/57 (24%), Positives = 30/57 (52%)

Query: 226 KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
              +P +  +SF +  G+   ++G +G+GK+T  ++L      +SG+  +    IR+
Sbjct: 11  DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIRE 67

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTT 258
           D    V  ISF +  GE  GL+G +G+GK+TT
Sbjct: 297 DHNVVVKNISFTLRPGETLGLVGESGSGKSTT 328

Length = 529

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	288
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
KOG0059|consensus	885		100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.94
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.81
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.8
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.78
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.77
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.76
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.75
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.74
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.74
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.74
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.72
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.71
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.71
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.71
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.71
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.7
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.7
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.7
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.7
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.7
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.7
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.69
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.69
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.69
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.69
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.69
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.69
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.68
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.68
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.68
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.68
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.68
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.68
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.68
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.67
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.67
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.67
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.67
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.67
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.67
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.67
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.67
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.67
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.67
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.67
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.67
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.66
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.66
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.66
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.66
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.66
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.66
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.66
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.66
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.66
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.66
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.66
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.66
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.66
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.66
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.66
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.66
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.66
PRK10908	222	cell division protein FtsE; Provisional	99.65
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.65
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.65
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.65
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.65
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.65
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.65
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.65
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.65
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.65
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.65
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.65
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.65
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.65
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.65
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.65
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.65
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.65
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.65
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.65
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.65
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.65
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.64
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.64
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.64
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.64
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.64
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.64
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.64
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.64
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.64
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.64
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.64
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.64
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.64
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.64
cd03246	173	ABCC_Protease_Secretion This family represents the	99.64
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.64
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.64
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.64
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.64
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.64
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.64
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.64
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.64
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.64
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.63
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.63
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.63
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.63
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.63
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.63
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.63
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.63
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.63
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.63
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.63
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.63
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.63
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.63
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.63
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.63
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.63
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.63
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.63
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.63
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.63
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.63
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.63
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.63
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.63
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.63
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.62
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.62
COG4559	259	ABC-type hemin transport system, ATPase component	99.62
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.62
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.62
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.62
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.62
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.62
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.62
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.62
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.62
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.62
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.62
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.62
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.62
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.62
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.62
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.62
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.62
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.61
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.61
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.61
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.61
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.61
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.61
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.61
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.61
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.61
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.61
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.61
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.6
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.6
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.6
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.6
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.6
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.6
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.6
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.6
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.6
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.6
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.6
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.6
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.6
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.59
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.59
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.59
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.59
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.59
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.59
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.59
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.59
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.59
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.59
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.59
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.59
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.59
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.59
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.59
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.58
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.58
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.58
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.58
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.58
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.58
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.58
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.58
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.58
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.58
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.58
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.58
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.58
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.58
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.57
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.57
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.57
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.57
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.57
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.57
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.57
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.57
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.56
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.56
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.56
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.56
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.56
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.56
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.56
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.56
COG1123	539	ATPase components of various ABC-type transport sy	99.56
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.56
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.56
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.56
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.55
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.55
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.55
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.55
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.55
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.55
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.55
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.55
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.55
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.55
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.55
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.55
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.54
PRK10938	490	putative molybdenum transport ATP-binding protein	99.54
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.54
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.54
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.54
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.54
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.54
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.54
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.53
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.53
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.53
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.53
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.52
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.52
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.52
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.52
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.52
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.52
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.51
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.51
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.51
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.51
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.51
KOG0058|consensus	716		99.5
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.5
PRK10938	490	putative molybdenum transport ATP-binding protein	99.5
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.5
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.5
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.5
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.5
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.5
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.5
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.5
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.49
COG4181	228	Predicted ABC-type transport system involved in ly	99.49
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.49
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.49
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.49
PRK11147	635	ABC transporter ATPase component; Reviewed	99.49
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.48
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.48
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.48
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.48
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.48
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.48
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.48
KOG0057|consensus	591		99.48
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.48
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.48
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.48
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.47
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.47
COG4987	573	CydC ABC-type transport system involved in cytochr	99.47
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.47
PRK11147	635	ABC transporter ATPase component; Reviewed	99.47
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.47
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.47
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.46
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.46
COG4988	559	CydD ABC-type transport system involved in cytochr	99.46
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.46
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.46
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.46
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.45
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.45
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.44
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.44
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.44
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.44
PLN03140	1470	ABC transporter G family member; Provisional	99.43
KOG0056|consensus	790		99.43
PLN03130	1622	ABC transporter C family member; Provisional	99.42
PLN03232	1495	ABC transporter C family member; Provisional	99.41
PLN03073	718	ABC transporter F family; Provisional	99.41
KOG0055|consensus	1228		99.4
COG0488	530	Uup ATPase components of ABC transporters with dup	99.4
PLN03211	659	ABC transporter G-25; Provisional	99.4
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.4
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.39
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.39
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.39
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.39
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.39
PTZ00243	1560	ABC transporter; Provisional	99.38
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.38
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.38
COG1123	539	ATPase components of various ABC-type transport sy	99.37
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.36
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.36
PRK13409	590	putative ATPase RIL; Provisional	99.36
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.35
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.35
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.34
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.34
PLN03073	718	ABC transporter F family; Provisional	99.33
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.33
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.32
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.32
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.32
COG0488	530	Uup ATPase components of ABC transporters with dup	99.31
PRK13409	590	putative ATPase RIL; Provisional	99.31
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.3
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.3
KOG0055|consensus	1228		99.26
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.24
KOG0054|consensus	1381		99.22
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.19
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.19
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.18
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.13
PLN03140	1470	ABC transporter G family member; Provisional	99.12
KOG2355|consensus	291		99.06
KOG0065|consensus	1391		99.04
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.04
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	99.03
COG4172	534	ABC-type uncharacterized transport system, duplica	99.02
PLN03130	1622	ABC transporter C family member; Provisional	99.01
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	98.99
KOG0927|consensus	614		98.97
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	98.96
COG4172	534	ABC-type uncharacterized transport system, duplica	98.96
PLN03232	1495	ABC transporter C family member; Provisional	98.95
PTZ00243	1560	ABC transporter; Provisional	98.93
COG4136	213	ABC-type uncharacterized transport system, ATPase	98.91
KOG0061|consensus	613		98.89
KOG0054|consensus	1381		98.8
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	98.75
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	98.7
KOG0060|consensus	659		98.7
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.69
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	98.67
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	98.64
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	98.62
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	98.59
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.59
COG4178	604	ABC-type uncharacterized transport system, permeas	98.58
KOG0927|consensus	614		98.57
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	98.55
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.55
KOG0066|consensus	807		98.51
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.51
PRK08149	428	ATP synthase SpaL; Validated	98.5
KOG0064|consensus	728		98.46
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	98.44
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	98.44
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.44
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.42
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.42
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.41
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.4
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.39
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	98.36
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.29
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	98.26
PRK09099	441	type III secretion system ATPase; Provisional	98.26
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	98.26
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	98.25
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	98.25
PRK09862	506	putative ATP-dependent protease; Provisional	98.24
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	98.23
KOG0062|consensus	582		98.23
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	98.22
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	98.22
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.19
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.18
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	98.17
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	98.16
PRK05922	434	type III secretion system ATPase; Validated	98.16
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.15
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.14
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.12
PRK06315	442	type III secretion system ATPase; Provisional	98.09
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.09
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	98.09
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	98.06
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.05
PRK10416	318	signal recognition particle-docking protein FtsY;	98.05
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	98.01
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	97.99
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	97.99
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.99
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	97.98
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	97.98
PLN02796	347	D-glycerate 3-kinase	97.98
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	97.96
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	97.93
TIGR00767	415	rho transcription termination factor Rho. Members	97.92
PRK01889	356	GTPase RsgA; Reviewed	97.9
PRK04863	1486	mukB cell division protein MukB; Provisional	97.9
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	97.88
PRK06820	440	type III secretion system ATPase; Validated	97.87
PRK06936	439	type III secretion system ATPase; Provisional	97.87
PRK00098	298	GTPase RsgA; Reviewed	97.84
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	97.84
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.83
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	97.83
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	97.83
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	97.81
PRK00635	1809	excinuclease ABC subunit A; Provisional	97.8
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	97.77
PRK03846	198	adenylylsulfate kinase; Provisional	97.75
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	97.72
PRK00635	1809	excinuclease ABC subunit A; Provisional	97.72
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	97.67
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	97.58
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.58
KOG0065|consensus	1391		97.56
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.56
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.55
KOG0062|consensus	582		97.49
cd01128	249	rho_factor Transcription termination factor rho is	97.48
PRK08927	442	fliI flagellum-specific ATP synthase; Validated	97.48
PLN02165	334	adenylate isopentenyltransferase	97.46
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	97.45
PLN03046	460	D-glycerate 3-kinase; Provisional	97.45
KOG0063|consensus	592		97.45
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	97.43
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.42
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.4
PLN02318	656	phosphoribulokinase/uridine kinase	97.39
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	97.38
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	97.34
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	97.33
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.22
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	97.2
PRK13851	344	type IV secretion system protein VirB11; Provision	97.2
PRK15494	339	era GTPase Era; Provisional	97.14
PF12698	344	ABC2_membrane_3: ABC-2 family transporter protein;	97.12
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.09
PRK09183	259	transposase/IS protein; Provisional	97.09
TIGR03819	340	heli_sec_ATPase helicase/secretion neighborhood AT	97.06
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	97.05
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	97.02
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	97.02
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.98
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	96.98
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	96.95
KOG0066|consensus	807		96.92
COG3950	440	Predicted ATP-binding protein involved in virulenc	96.91
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	96.89
PRK10246	1047	exonuclease subunit SbcC; Provisional	96.88
PTZ00035	337	Rad51 protein; Provisional	96.84
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	96.84
PRK00064	361	recF recombination protein F; Reviewed	96.82
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	96.81
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	96.8
cd03239	178	ABC_SMC_head The structural maintenance of chromos	96.79
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	96.78
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	96.76
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	96.74
PLN03210	1153	Resistant to P. syringae 6; Provisional	96.72
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.68
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	96.67
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	96.67
PHA02562	562	46 endonuclease subunit; Provisional	96.66
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	96.66
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	96.64
TIGR00611	365	recf recF protein. All proteins in this family for	96.59
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	96.58

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=1.6e-48  Score=416.08  Aligned_cols=281  Identities=46%  Similarity=0.811  Sum_probs=239.6

Q ss_pred             CEeeehHHHHHHHHHHHHHHHHhCCccccCCCCHHHHHHHHHHHHhhHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHH
Q psy7219           1 VYSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSVPSTAFVVLGCFNLFVGLIT   80 (288)
Q Consensus         1 ~f~~D~~~~~i~~~~~i~i~~~f~~~~f~~~~~~~~~~lll~l~g~s~i~~~Y~~S~~F~~~~~A~~~~~~~~~~~g~~~   80 (288)
                      .|+||+++|+++++++++++.+|+.++|++..+++++++++++||||+||++|++||+|+++++|++.++++|+++|++.
T Consensus      1727 ~fl~D~~~y~i~~~~~i~i~~~f~~~~~~~~~~l~~~~lll~lyG~a~ip~tYl~SflF~~~~~A~~~~~~in~~~G~~~ 1806 (2272)
T TIGR01257      1727 NFLWDIMNYAVSAGLVVGIFIGFQKKAYTSPENLPALVALLMLYGWAVIPMMYPASFLFDVPSTAYVALSCANLFIGINS 1806 (2272)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence            37899999999999999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccC-cchhhHHHhhcceeeeeChhhHHHHHHHHHHHH-HHHhhhhhcCCCccccccccccchhHHHHHHHH
Q psy7219          81 TLTVTVLDNLQD-DTLEYVNQYLKVIFLIFPHFCLGEGLMKLANTY-WTSSFANSYGTRLVAVNIWAWRMIGKNLTCMAC  158 (288)
Q Consensus        81 ~~~~~il~~~~~-~~~~~~~~~l~~~~~~~P~~~l~~gl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~l~~  158 (288)
                      .++++++..+.. .....+++.++++|+++|+||+++|+++++.+. ....+. ..+... ..++++|+.+|+++++|++
T Consensus      1807 ~i~~~il~~~~~~~~~~~~~~~l~~if~i~P~f~lg~gl~~l~~~~~~~~~~~-~~~~~~-~~~~~~~~~~g~~ll~m~~ 1884 (2272)
T TIGR01257      1807 SAITFVLELFENNRTLLRFNAMLRKLLIVFPHFCLGRGLIDLALSQAVTDVYA-QFGEEH-SANPFQWDLIGKNLVAMAV 1884 (2272)
T ss_pred             HHHHHHHHHhcccchhhhHHHHHHHHHeeCchhhhHHHHHHHHHhHHHHHHHH-hhcccc-cCCccchhhccHHHHHHHH
Confidence            888888876543 245567888999999999999999999998876 333343 334333 4578999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcCCCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEEeeeEEeccccccccceeeeEEE
Q psy7219         159 HGALYSAINLSIEYKVFSRCFTRSNPHPVPVSLEEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFG  238 (288)
Q Consensus       159 ~~~v~~~l~~~ie~~~~~~~~~~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~~~l~~~~l~k~y~~~~~~~~av~~is~~  238 (288)
                      ++++|+++++++|++.+.+.+... +.+.+...+|+||++|++|+......++.+.++|++|.|++  +++.||+|+||+
T Consensus      1885 ~~iv~flLl~~ie~~~~~~~~~~~-~~~~~~~~eD~DV~~Er~rV~~~~~~~~~L~v~nLsK~Y~~--~~~~aL~~ISf~ 1961 (2272)
T TIGR01257      1885 EGVVYFLLTLLIQHHFFLSRWIAE-PAKEPIFDEDDDVAEERQRIISGGNKTDILRLNELTKVYSG--TSSPAVDRLCVG 1961 (2272)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhccc-cCcCcCCCchhHHHHHHHHHhccCCCCceEEEEEEEEEECC--CCceEEEeeEEE
Confidence            999999999999987654333211 12223346899999999999876666778999999999963  236799999999


Q ss_pred             EeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchhhh
Q psy7219         239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL  286 (288)
Q Consensus       239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~~~  286 (288)
                      |++|||+||+|+||||||||+|||+|+.+|++|+|+++|+++.++.++
T Consensus      1962 I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~ 2009 (2272)
T TIGR01257      1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISD 2009 (2272)
T ss_pred             EcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHH
Confidence            999999999999999999999999999999999999999998655443

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>KOG0059|consensus

Probab=100.00  E-value=3.5e-34  Score=292.77  Aligned_cols=278  Identities=35%  Similarity=0.478  Sum_probs=212.6

Q ss_pred             EeeehHHHHHHHHHHHHHHHHhCCccccCCCCHHHHHHHHHHHHhhHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHH
Q psy7219           2 YSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSVPSTAFVVLGCFNLFVGLITT   81 (288)
Q Consensus         2 f~~D~~~~~i~~~~~i~i~~~f~~~~f~~~~~~~~~~lll~l~g~s~i~~~Y~~S~~F~~~~~A~~~~~~~~~~~g~~~~   81 (288)
                      |+||+++|+++++++.+++.+|+   |...++...+++++++|+++.+|++|+.|++|+++++|++.+.++++++|+...
T Consensus       346 ~~~d~~~~~l~~~~~~~~~~~f~---~~~~~~~~~~~~~~~l~~~s~i~l~y~~s~~f~~~~~~~v~~~i~~~~s~~~~~  422 (885)
T KOG0059|consen  346 LVWDLLLYLLILLILLIFVLIFG---FFAGNNTVIILLLLLLYIRSAIPLTYILSFIFSKESTASVILSIYNLISGLLVF  422 (885)
T ss_pred             HHHHHHHHHHHHHHHHHHhheee---cccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCceeehhhHHHHHHHHHH
Confidence            68999999999999888888887   555567888999999999999999999999999999999999999999998777


Q ss_pred             HHHHHHhhccCc-chhhHHHhhcceeeee-ChhhHHHHHHHHHHHH-HHHhhhhhcCCCcccc-ccccccc--hhHHHHH
Q psy7219          82 LTVTVLDNLQDD-TLEYVNQYLKVIFLIF-PHFCLGEGLMKLANTY-WTSSFANSYGTRLVAV-NIWAWRM--IGKNLTC  155 (288)
Q Consensus        82 ~~~~il~~~~~~-~~~~~~~~l~~~~~~~-P~~~l~~gl~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~--~g~~l~~  155 (288)
                      +++.++....+. ........+...+.++ |.++++++..+...+. ....++ ..+...+.. .+..|..  ++.....
T Consensus       423 ~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (885)
T KOG0059|consen  423 FAVFILQSFANGRTGDIFSMILVPGFTLFLPLYELSSLAAEGNLNLNDGMSLE-VLGNDESFYTLLLEWLLPLIGRRYLA  501 (885)
T ss_pred             HHHhhhhhcccccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhhhhh-hhcccccccchhHHHHHHHHHHHHHH
Confidence            777766544433 3445566666667766 8888888887776542 112222 111111111 2455765  7888888


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhh---cCCCCCCCCCcchhHHHHHHhhhcCCCC---CCeEEEEeeeEEeccccccc
Q psy7219         156 MACHGALYSAINLSIEYKVFSRCFTR---SNPHPVPVSLEEDDVRKERERVERGADS---GDVLVVKRLFKIYANSKDTK  229 (288)
Q Consensus       156 l~~~~~v~~~l~~~ie~~~~~~~~~~---~~~~~~~~~~~~~~v~~e~~~~~~~~~~---~~~l~~~~l~k~y~~~~~~~  229 (288)
                      +..++..+.++..+++..+..+....   ..+...+...|++|+.+|++++......   .+.+.+++++|.|+..+  +
T Consensus       502 ~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~e~~~v~~~~~~~~~~~~~~~~~L~k~y~~~~--~  579 (885)
T KOG0059|consen  502 LVTEGVKDDLFFLLIFVPFKRRMRALTQNMLKGFEPVEVEKLDVARERNRVETLLFRSSYSSALVLNNLSKVYGGKD--G  579 (885)
T ss_pred             HHHHHHHHHHHHHHhhhhhccccccccccccCCCcCcchhhHHHHHHHHhhhhhhhcccccceEEEcceeeeecchh--h
Confidence            99999999988888887654433211   1112234456788899987766554333   37899999999997522  2


Q ss_pred             cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchhhh
Q psy7219         230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL  286 (288)
Q Consensus       230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~~~  286 (288)
                       |++++|++|++|||||++|+|||||||++||+||+.+||+|+++++|+++..+.++
T Consensus       580 -Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~  635 (885)
T KOG0059|consen  580 -AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDF  635 (885)
T ss_pred             -hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccch
Confidence             99999999999999999999999999999999999999999999999999875443

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.94  E-value=4.6e-26  Score=244.75  Aligned_cols=245  Identities=23%  Similarity=0.259  Sum_probs=158.0

Q ss_pred             ccCCCCHHHHHHHHHHHHhhHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhccCcchhhHHHhhcceee
Q psy7219          28 YISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSVPSTAFVVLGCFNLFVGLITTLTVTVLDNLQDDTLEYVNQYLKVIFL  107 (288)
Q Consensus        28 f~~~~~~~~~~lll~l~g~s~i~~~Y~~S~~F~~~~~A~~~~~~~~~~~g~~~~~~~~il~~~~~~~~~~~~~~l~~~~~  107 (288)
                      +...++...+++++++|+.+.|.+++++|.+|+++..|.....++.++..+ .....+   ...+.    .+...++.++
T Consensus       724 ~~~~s~~~~lfl~~~~y~~s~I~~~fliS~fFska~~A~~~~~li~f~~~l-p~~~~~---~~~~~----~~~~~~~~~s  795 (2272)
T TIGR01257       724 ILHYSDPFILFLFLLAFSTATIMQCFLLSTFFSKASLAAACSGVIYFTLYL-PHILCF---AWQDR----MTADLKTAVS  795 (2272)
T ss_pred             eeecCChHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHh---hcccc----cCHHHHHHHH
Confidence            334567888999999999999999999999999999998877776654322 211111   11111    1222445678


Q ss_pred             eeChhhHHHHHHHHHHHHHHHhhhhhcCCCcc--cccccccc--chhHHHHHHHHHHHHHHHHHHHHHhh----------
Q psy7219         108 IFPHFCLGEGLMKLANTYWTSSFANSYGTRLV--AVNIWAWR--MIGKNLTCMACHGALYSAINLSIEYK----------  173 (288)
Q Consensus       108 ~~P~~~l~~gl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~g~~l~~l~~~~~v~~~l~~~ie~~----------  173 (288)
                      ++|+.+++.|+..+......     ..|..+.  ..++...+  .++..+.+|++++++|+++.||+|.-          
T Consensus       796 L~sp~af~~g~~~i~~~e~~-----~~G~~w~n~~~~~~~~d~~s~~~~~~ml~~d~~lY~lL~~Yld~V~PgeyG~~kp  870 (2272)
T TIGR01257       796 LLSPVAFGFGTEYLVRFEEQ-----GLGLQWSNIGNSPLEGDEFSFLLSMKMMLLDAALYGLLAWYLDQVFPGDYGTPLP  870 (2272)
T ss_pred             hcCHHHHHHHHHHHHHHhhh-----CCCcccccccccccCCCCccHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCC
Confidence            99999999988766542210     0111110  00111111  36778899999999999999999941          


Q ss_pred             --hhhhh--hhhcCC---CCCC-C---C---CcchhHHHHH----HhhhcCC-CCCCeEEEEeeeEEeccccccccceee
Q psy7219         174 --VFSRC--FTRSNP---HPVP-V---S---LEEDDVRKER----ERVERGA-DSGDVLVVKRLFKIYANSKDTKPAVNQ  234 (288)
Q Consensus       174 --~~~~~--~~~~~~---~~~~-~---~---~~~~~v~~e~----~~~~~~~-~~~~~l~~~~l~k~y~~~~~~~~av~~  234 (288)
                        |+..+  |.....   .... .   +   .+.++...+.    ...+... .....++++|++|.|++  +++++++|
T Consensus       871 w~F~~~~syW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~L~I~nLsK~y~~--~~k~aL~~  948 (2272)
T TIGR01257       871 WYFLLQESYWLGGEGCSTREERALEKTEPLTEEMEDPEHPEGINDSFFERELPGLVPGVCVKNLVKIFEP--SGRPAVDR  948 (2272)
T ss_pred             cccccchhhhcCCcccccccccccccccccccccccccccccccccccccccCCCCceEEEEeEEEEecC--CCceEEEe
Confidence              11111  211100   0000 0   0   0000100000    0011111 11247999999999953  24679999


Q ss_pred             eEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchhhhc
Q psy7219         235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLV  287 (288)
Q Consensus       235 is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~~~v  287 (288)
                      +||++++||++||+|+|||||||++|+|+|+.+|++|+|+++|+++.++++++
T Consensus       949 lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~ 1001 (2272)
T TIGR01257       949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAV 1001 (2272)
T ss_pred             eEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHH
Confidence            99999999999999999999999999999999999999999999987665443

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.81  E-value=1.8e-20  Score=161.16  Aligned_cols=70  Identities=43%  Similarity=0.682  Sum_probs=65.0

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchhh
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD  285 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~~  285 (288)
                      .+.+++++|+|+    ++.||+|+||.|++||++|+||+|||||||||+||.|+.+||+|+|.++|.+++.++.
T Consensus         2 ~L~ie~vtK~Fg----~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~   71 (300)
T COG4152           2 ALEIEGVTKSFG----DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIK   71 (300)
T ss_pred             ceEEecchhccC----ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhh
Confidence            478999999995    5789999999999999999999999999999999999999999999999999876553

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.80  E-value=2.3e-20  Score=156.34  Aligned_cols=73  Identities=38%  Similarity=0.534  Sum_probs=67.6

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchhhhcC
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR  288 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~~~vr  288 (288)
                      +.+.+++|+|++   ...|++|+||.+++||++||+|+|||||||++|||.+++.|++|.|+++|.|..++...||
T Consensus         2 l~v~~l~K~y~~---~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vr   74 (245)
T COG4555           2 LEVTDLTKSYGS---KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVR   74 (245)
T ss_pred             eeeeehhhhccC---HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHh
Confidence            678999999964   2349999999999999999999999999999999999999999999999999999888775

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.78  E-value=3.1e-20  Score=155.39  Aligned_cols=68  Identities=44%  Similarity=0.696  Sum_probs=63.9

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccch
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS  283 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~  283 (288)
                      .+.++++.|+|+    ++.+|+|+||.|++||++||+|||||||||+|.|++|+.+|++|+|.++|.||+..
T Consensus         4 ~L~a~~l~K~y~----kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~l   71 (243)
T COG1137           4 TLVAENLAKSYK----KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKL   71 (243)
T ss_pred             EEEehhhhHhhC----CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccC
Confidence            588999999995    46799999999999999999999999999999999999999999999999999753

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.77  E-value=1.8e-19  Score=155.35  Aligned_cols=68  Identities=43%  Similarity=0.625  Sum_probs=63.7

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccch
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS  283 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~  283 (288)
                      .+.+++++|.|+    +..|+||+||+|++||++||+|||||||||+|++|||.++||+|+|.++|.+|..-
T Consensus         4 lL~v~~l~k~FG----Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l   71 (250)
T COG0411           4 LLEVRGLSKRFG----GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGL   71 (250)
T ss_pred             eeeeccceeecC----CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCC
Confidence            467999999995    47899999999999999999999999999999999999999999999999998653

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.76  E-value=9.9e-19  Score=158.53  Aligned_cols=71  Identities=46%  Similarity=0.715  Sum_probs=64.7

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchhh
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD  285 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~~  285 (288)
                      .+.+++++|.|++   ++.|++|+||.+++||++||+||||||||||+|+|+|+.+|++|+|.++|.+..++..
T Consensus         4 ~i~~~~l~k~~~~---~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~   74 (293)
T COG1131           4 VIEVRNLTKKYGG---DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPA   74 (293)
T ss_pred             eeeecceEEEeCC---CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHH
Confidence            4778999999952   3689999999999999999999999999999999999999999999999999876543

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.75  E-value=3.4e-18  Score=156.06  Aligned_cols=70  Identities=41%  Similarity=0.683  Sum_probs=64.5

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchh
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM  284 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~  284 (288)
                      ..+.+++++|.|+    ++.|++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|+++|+++.+..
T Consensus         6 ~~i~i~~l~k~~~----~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~   75 (306)
T PRK13537          6 APIDFRNVEKRYG----DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA   75 (306)
T ss_pred             ceEEEEeEEEEEC----CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch
Confidence            4689999999995    357999999999999999999999999999999999999999999999999986543

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.74  E-value=3.8e-18  Score=157.75  Aligned_cols=69  Identities=39%  Similarity=0.657  Sum_probs=64.0

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccch
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS  283 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~  283 (288)
                      ..+.++|++|.|+    ++.+++|+||+|++||++||+||||||||||+++|+|+.+|++|++.++|.++.+.
T Consensus        40 ~~i~i~nl~k~y~----~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~  108 (340)
T PRK13536         40 VAIDLAGVSKSYG----DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPAR  108 (340)
T ss_pred             eeEEEEEEEEEEC----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcc
Confidence            3699999999995    35799999999999999999999999999999999999999999999999988653

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.74  E-value=4.3e-18  Score=156.06  Aligned_cols=68  Identities=34%  Similarity=0.572  Sum_probs=64.3

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..+.+++++|.|+    +..||+|+||+|++||.+.|||||||||||++|||+|+++||+|+|.++|.++..
T Consensus         4 ~~l~i~~v~k~yg----~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~   71 (352)
T COG3842           4 PALEIRNVSKSFG----DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITD   71 (352)
T ss_pred             ceEEEEeeeeecC----CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC
Confidence            4689999999995    4789999999999999999999999999999999999999999999999999865

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.74  E-value=2e-18  Score=150.76  Aligned_cols=57  Identities=47%  Similarity=0.667  Sum_probs=52.5

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchh
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM  284 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~  284 (288)
                      ...||+|+||+|++||++|++|+||||||||+|||||...|++|.+.++|++=.++.
T Consensus        36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~   92 (325)
T COG4586          36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRR   92 (325)
T ss_pred             hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhH
Confidence            346999999999999999999999999999999999999999999999999755443

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.72  E-value=1.1e-17  Score=147.39  Aligned_cols=67  Identities=39%  Similarity=0.654  Sum_probs=63.3

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|++..|+    ++++++|+||++++||+++|+|||||||||++|+|+|..+|.+|+|+++|.++.+
T Consensus         2 ~L~~~~ls~~y~----~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~   68 (258)
T COG1120           2 MLEVENLSFGYG----GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIAS   68 (258)
T ss_pred             eeEEEEEEEEEC----CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhh
Confidence            478999999995    4789999999999999999999999999999999999999999999999999875

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.71  E-value=2.2e-17  Score=150.38  Aligned_cols=68  Identities=38%  Similarity=0.672  Sum_probs=62.8

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccch
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS  283 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~  283 (288)
                      .+.+++++|.|+    ++.+++|+||++++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.+.
T Consensus         2 ~l~~~~l~~~~~----~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~   69 (301)
T TIGR03522         2 SIRVSSLTKLYG----TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQN   69 (301)
T ss_pred             EEEEEEEEEEEC----CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC
Confidence            378999999995    35699999999999999999999999999999999999999999999999988654

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.71  E-value=2e-17  Score=151.00  Aligned_cols=67  Identities=28%  Similarity=0.515  Sum_probs=62.6

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .++++|++|.|++    ..+++|+|++|++||.+.|+|||||||||++|||+|+++||+|+|+++|.++++
T Consensus         3 ~i~l~~v~K~yg~----~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~   69 (338)
T COG3839           3 ELELKNVRKSFGS----FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTD   69 (338)
T ss_pred             EEEEeeeEEEcCC----ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC
Confidence            4789999999963    229999999999999999999999999999999999999999999999999876

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.71  E-value=1.6e-17  Score=143.99  Aligned_cols=66  Identities=36%  Similarity=0.607  Sum_probs=62.6

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ++.+|++|.|.    ++.||+|+||+|++||.+.++||+|||||||+|||.++.+||+|+|+++|.++++
T Consensus         2 I~~~nvsk~y~----~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~   67 (309)
T COG1125           2 IEFENVSKRYG----NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISD   67 (309)
T ss_pred             ceeeeeehhcC----CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeeccc
Confidence            57899999996    4679999999999999999999999999999999999999999999999999875

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.71  E-value=2.9e-17  Score=144.05  Aligned_cols=70  Identities=36%  Similarity=0.628  Sum_probs=64.1

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchh
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM  284 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~  284 (288)
                      ..++++|++..|++   + +|++|+||.|++||..+|+|||||||||++|.+.|+.+|++|+|.+.|.++++..
T Consensus         3 ~~i~v~nl~v~y~~---~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~   72 (254)
T COG1121           3 PMIEVENLTVSYGN---R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRR   72 (254)
T ss_pred             cEEEEeeeEEEECC---E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccc
Confidence            35889999999964   3 6999999999999999999999999999999999999999999999999876554

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.70  E-value=3.2e-17  Score=149.46  Aligned_cols=68  Identities=43%  Similarity=0.731  Sum_probs=62.8

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..+.++|++|.|++    +.+++|+||+|++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus         3 ~~i~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~   70 (303)
T TIGR01288         3 VAIDLVGVSKSYGD----KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPS   70 (303)
T ss_pred             cEEEEEeEEEEeCC----eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc
Confidence            36889999999953    569999999999999999999999999999999999999999999999998753

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.70  E-value=2.8e-17  Score=146.05  Aligned_cols=70  Identities=27%  Similarity=0.596  Sum_probs=63.3

Q ss_pred             EEEEeeeEEeccc-cccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANS-KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~-~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +++++++|.|... .+...|++|+||.|++||+||++|++||||||++|++.++++||+|+|.++|.++..
T Consensus         2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~   72 (339)
T COG1135           2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTA   72 (339)
T ss_pred             eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEeccc
Confidence            6789999999763 224579999999999999999999999999999999999999999999999988753

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.70  E-value=3.1e-17  Score=141.49  Aligned_cols=71  Identities=32%  Similarity=0.568  Sum_probs=64.2

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|++++|+.+...++|+|++||+|.+|||+||+|++|+||||+.++|.|+.+|++|+|.++|.++..
T Consensus         3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~   73 (252)
T COG1124           3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAP   73 (252)
T ss_pred             eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCc
Confidence            58899999999764333469999999999999999999999999999999999999999999999976654

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.70  E-value=3.8e-17  Score=140.51  Aligned_cols=71  Identities=20%  Similarity=0.243  Sum_probs=65.2

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC---CCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK---PTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~---pt~G~i~i~g~~i~~  282 (288)
                      .+.++|++|.|+.+++++.+++|+||++++||+++|+|+|||||||++++|+|+++   |++|++.++|.++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~   76 (202)
T cd03233           3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKE   76 (202)
T ss_pred             eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECcc
Confidence            47799999999875456789999999999999999999999999999999999999   899999999998754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.70  E-value=3.6e-17  Score=141.93  Aligned_cols=70  Identities=30%  Similarity=0.532  Sum_probs=61.6

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++++++.|++.++.+++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~   70 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISK   70 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhh
Confidence            3578999999632111579999999999999999999999999999999999999999999999988753

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.70  E-value=4.3e-17  Score=139.90  Aligned_cols=69  Identities=30%  Similarity=0.550  Sum_probs=64.3

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccch
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS  283 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~  283 (288)
                      .++++||+|.|++   ++.|++|+||.|++||.++|+|++||||||++|+|.|+.+||+|+|.++|.++..-
T Consensus         3 ~i~~~nl~k~yp~---~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~   71 (258)
T COG3638           3 MIEVKNLSKTYPG---GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKL   71 (258)
T ss_pred             eEEEeeeeeecCC---CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhcc
Confidence            5889999999974   57899999999999999999999999999999999999999999999999887543

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.69  E-value=5.3e-17  Score=150.11  Aligned_cols=70  Identities=27%  Similarity=0.512  Sum_probs=63.1

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ++++|++|.|+.+++.+++++|+||+|++||++||+|+|||||||++|+|+|+++|++|+|.++|.++.+
T Consensus         2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~   71 (343)
T TIGR02314         2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTT   71 (343)
T ss_pred             EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc
Confidence            6799999999642223579999999999999999999999999999999999999999999999998854

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.69  E-value=7.7e-17  Score=141.44  Aligned_cols=71  Identities=28%  Similarity=0.545  Sum_probs=63.4

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++++++.|+.....+++++++||+|++||++||+|+|||||||++++|+|+.+|++|+|+++|.++.+
T Consensus         5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~   75 (233)
T PRK11629          5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSK   75 (233)
T ss_pred             eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCc
Confidence            58899999999642112469999999999999999999999999999999999999999999999998753

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.69  E-value=6e-17  Score=140.52  Aligned_cols=70  Identities=43%  Similarity=0.622  Sum_probs=62.1

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++|+++.|++..+..++++|+||++++||+++|+|+|||||||++|+|+|+.+|++|+|.++|.++..
T Consensus         2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~   71 (218)
T cd03266           2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK   71 (218)
T ss_pred             eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc
Confidence            5789999999642111269999999999999999999999999999999999999999999999998764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.69  E-value=5.4e-17  Score=137.70  Aligned_cols=66  Identities=30%  Similarity=0.527  Sum_probs=61.9

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.++|++|+|+    ++.+++|+|++|++||++.|+||+|+||||++|+|.|+++|++|+|.++|.++.
T Consensus         2 mi~i~~l~K~fg----~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~   67 (240)
T COG1126           2 MIEIKNLSKSFG----DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVG   67 (240)
T ss_pred             eEEEEeeeEEeC----CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEecc
Confidence            478999999995    478999999999999999999999999999999999999999999999997764

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.69  E-value=6.1e-17  Score=140.68  Aligned_cols=68  Identities=59%  Similarity=0.912  Sum_probs=61.3

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++++++.|++  +++++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|+++|.++.+
T Consensus         1 l~~~~l~~~~~~--~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~   68 (220)
T cd03263           1 LQIRNLTKTYKK--GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT   68 (220)
T ss_pred             CEEEeeEEEeCC--CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccc
Confidence            467899999953  12579999999999999999999999999999999999999999999999998754

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.69  E-value=6.5e-17  Score=140.62  Aligned_cols=69  Identities=32%  Similarity=0.560  Sum_probs=61.1

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.++++++.|++....+++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   69 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT   69 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc
Confidence            357899999963211257999999999999999999999999999999999999999999999998874

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.68  E-value=7.7e-17  Score=140.13  Aligned_cols=70  Identities=30%  Similarity=0.514  Sum_probs=62.3

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++++++.|++..+.+++++++||++++||++||+|+|||||||++++|+|+.+|++|+++++|.++.+
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~   71 (221)
T TIGR02211         2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSK   71 (221)
T ss_pred             EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhh
Confidence            6789999999642222569999999999999999999999999999999999999999999999988753

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.68  E-value=8.2e-17  Score=138.50  Aligned_cols=66  Identities=29%  Similarity=0.458  Sum_probs=61.1

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++++++.|++    +++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++..
T Consensus         2 l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~   67 (204)
T PRK13538          2 LEARNLACERDE----RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRR   67 (204)
T ss_pred             eEEEEEEEEECC----EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccc
Confidence            678999999953    469999999999999999999999999999999999999999999999988753

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.68  E-value=9.3e-17  Score=137.75  Aligned_cols=66  Identities=38%  Similarity=0.557  Sum_probs=61.4

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++|++|.|++    +++++|+||++++||++||+|+|||||||++++|+|+.+|++|+++++|.++.+
T Consensus         2 l~~~~l~~~~~~----~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~   67 (200)
T PRK13540          2 LDVIELDFDYHD----QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK   67 (200)
T ss_pred             EEEEEEEEEeCC----eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc
Confidence            678999999953    569999999999999999999999999999999999999999999999998754

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.68  E-value=8.6e-17  Score=139.44  Aligned_cols=67  Identities=30%  Similarity=0.562  Sum_probs=61.3

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.++|+++.|++  +.+++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~--~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   68 (216)
T TIGR00960         2 IRFEQVSKAYPG--GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLT   68 (216)
T ss_pred             eEEEEEEEEecC--CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehh
Confidence            678999999953  1246999999999999999999999999999999999999999999999999874

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.68  E-value=5e-17  Score=154.36  Aligned_cols=67  Identities=33%  Similarity=0.547  Sum_probs=63.3

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ..+++++++|+|+    +.+|++|+||++++||+.+|+|.||||||||+|+|+|.++|++|+|.++|.++.
T Consensus         7 ~ll~~~~i~K~Fg----gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~   73 (500)
T COG1129           7 PLLELRGISKSFG----GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVA   73 (500)
T ss_pred             ceeeeecceEEcC----CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEcc
Confidence            3688999999996    478999999999999999999999999999999999999999999999999875

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.68  E-value=7.5e-17  Score=140.25  Aligned_cols=66  Identities=56%  Similarity=0.783  Sum_probs=60.5

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++|++|.|++    +++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++..
T Consensus         1 i~~~~~~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~   66 (220)
T cd03265           1 IEVENLVKKYGD----FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR   66 (220)
T ss_pred             CEEEEEEEEECC----EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc
Confidence            468999999953    569999999999999999999999999999999999999999999999987753

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.68  E-value=9.9e-17  Score=140.85  Aligned_cols=66  Identities=24%  Similarity=0.586  Sum_probs=60.5

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++|+++.|+    ++++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus         1 l~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~   66 (235)
T cd03261           1 IELRGLTKSFG----GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISG   66 (235)
T ss_pred             CeEEEEEEEEC----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc
Confidence            36889999995    2569999999999999999999999999999999999999999999999988753

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.67  E-value=8.9e-17  Score=139.04  Aligned_cols=66  Identities=33%  Similarity=0.579  Sum_probs=60.6

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++++++.|++    +++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.+
T Consensus         1 l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~   66 (213)
T cd03259           1 LELKGLSKTYGS----VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTG   66 (213)
T ss_pred             CeeeeeEEEeCC----eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCc
Confidence            367899999953    569999999999999999999999999999999999999999999999988753

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.67  E-value=1e-16  Score=138.54  Aligned_cols=52  Identities=42%  Similarity=0.655  Sum_probs=49.5

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS  279 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~  279 (288)
                      .+.|++|+||++++||.+||+|+|||||||++|+|+|.++||+|++.++|.-
T Consensus        39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v   90 (249)
T COG1134          39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKV   90 (249)
T ss_pred             eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceE
Confidence            4679999999999999999999999999999999999999999999999863

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.67  E-value=1.1e-16  Score=139.71  Aligned_cols=70  Identities=31%  Similarity=0.551  Sum_probs=61.9

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++++++.|++.+...++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.+
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~   71 (228)
T cd03257           2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLK   71 (228)
T ss_pred             eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccc
Confidence            6789999999642111269999999999999999999999999999999999999999999999998754

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.67  E-value=1.6e-16  Score=138.94  Aligned_cols=72  Identities=24%  Similarity=0.431  Sum_probs=63.3

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..+.++++++.|++....+++++|+||++++||++||+|+|||||||++++|+|+.+|++|++.++|.++.+
T Consensus         5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~   76 (228)
T PRK10584          5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQ   76 (228)
T ss_pred             ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEccc
Confidence            468899999999642111359999999999999999999999999999999999999999999999988753

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.67  E-value=1.5e-16  Score=132.33  Aligned_cols=66  Identities=38%  Similarity=0.585  Sum_probs=60.9

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++++++.|++    +++++++||++++||+++|+|+||+||||++++|+|+.+|++|++.++|.++..
T Consensus         1 l~~~~l~~~~~~----~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~   66 (163)
T cd03216           1 LELRGITKRFGG----VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSF   66 (163)
T ss_pred             CEEEEEEEEECC----eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCc
Confidence            368899999953    469999999999999999999999999999999999999999999999988764

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.67  E-value=1.4e-16  Score=138.26  Aligned_cols=65  Identities=28%  Similarity=0.561  Sum_probs=61.8

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  280 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i  280 (288)
                      .+.+++++|.|+.    ..+++|+||+|++||+++|+||+||||||++|+++|+.+|++|+|.++|.++
T Consensus         3 ~l~i~~v~~~f~~----~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v   67 (248)
T COG1116           3 LLEIEGVSKSFGG----VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV   67 (248)
T ss_pred             eEEEEeeEEEeCc----eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc
Confidence            5789999999963    6799999999999999999999999999999999999999999999999987

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.67  E-value=1.5e-16  Score=134.09  Aligned_cols=66  Identities=32%  Similarity=0.581  Sum_probs=60.5

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++++++.|++    +++++++||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus         1 i~~~~l~~~~~~----~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~   66 (178)
T cd03229           1 LELKNVSKRYGQ----KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTD   66 (178)
T ss_pred             CEEEEEEEEECC----eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc
Confidence            357899999953    569999999999999999999999999999999999999999999999988753

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.67  E-value=1.3e-16  Score=136.52  Aligned_cols=66  Identities=27%  Similarity=0.479  Sum_probs=60.5

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++++++.|++    +.+++|+||.+++||++||+|+|||||||++++|+|+++|++|++.++|.++..
T Consensus         1 l~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~   66 (198)
T TIGR01189         1 LAARNLACSRGE----RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAE   66 (198)
T ss_pred             CEEEEEEEEECC----EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEccc
Confidence            367899999953    569999999999999999999999999999999999999999999999988653

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.67  E-value=1.2e-16  Score=136.83  Aligned_cols=68  Identities=38%  Similarity=0.539  Sum_probs=63.7

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccch
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS  283 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~  283 (288)
                      .+.+++++-.|+    ...+++++||.+++||+++|+|+||||||||+|.|+|+.+|++|+|.++|.||+..
T Consensus         3 mL~v~~l~~~YG----~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~   70 (237)
T COG0410           3 MLEVENLSAGYG----KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGL   70 (237)
T ss_pred             ceeEEeEeeccc----ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCC
Confidence            578999999995    36799999999999999999999999999999999999999999999999999754

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.67  E-value=1.5e-16  Score=137.63  Aligned_cols=67  Identities=30%  Similarity=0.529  Sum_probs=61.4

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++++++.|++   ++.+++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.+
T Consensus         2 l~~~~l~~~~~~---~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~   68 (214)
T TIGR02673         2 IEFHNVSKAYPG---GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNR   68 (214)
T ss_pred             EEEEeeeEEeCC---CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccc
Confidence            678999999942   2569999999999999999999999999999999999999999999999998753

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.67  E-value=1.4e-16  Score=136.87  Aligned_cols=66  Identities=26%  Similarity=0.404  Sum_probs=60.5

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++++++.|++    +.+++|+||.|++||++||+|+|||||||++++|+|+.+|++|++.++|.++..
T Consensus         1 l~i~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~   66 (201)
T cd03231           1 LEADELTCERDG----RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDF   66 (201)
T ss_pred             CEEEEEEEEeCC----ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccc
Confidence            368999999953    569999999999999999999999999999999999999999999999988753

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.67  E-value=2e-16  Score=143.15  Aligned_cols=70  Identities=33%  Similarity=0.604  Sum_probs=62.8

Q ss_pred             EEEEeeeEEeccccc-cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~-~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.+++++|.|++..+ ++++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|+++|.++.+
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~   73 (287)
T PRK13637          3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITD   73 (287)
T ss_pred             EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCC
Confidence            789999999964211 2479999999999999999999999999999999999999999999999998854

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.66  E-value=1.7e-16  Score=139.45  Aligned_cols=72  Identities=35%  Similarity=0.534  Sum_probs=64.2

Q ss_pred             CeEEEEeeeEEeccccc-----cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKD-----TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~-----~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..++++||.|.|+.+.+     ...||+||||+|++||++||+|++||||||+-|+|+|+++||+|+|+++|.++..
T Consensus         3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~   79 (268)
T COG4608           3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK   79 (268)
T ss_pred             ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhh
Confidence            36889999999975321     1479999999999999999999999999999999999999999999999999753

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.66  E-value=1.6e-16  Score=136.87  Aligned_cols=66  Identities=44%  Similarity=0.674  Sum_probs=60.7

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.+++++|.|+    ++++++|+||++++||+++|+|+|||||||++|+|+|+.+|++|++.++|.++.+
T Consensus         1 l~~~~l~~~~~----~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~   66 (208)
T cd03268           1 LKTNDLTKTYG----KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK   66 (208)
T ss_pred             CEEEEEEEEEC----CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccc
Confidence            36899999995    2579999999999999999999999999999999999999999999999998753

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.66  E-value=1.8e-16  Score=146.89  Aligned_cols=69  Identities=30%  Similarity=0.544  Sum_probs=62.4

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.++|++|.|+..++++++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus         2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~   70 (343)
T PRK11153          2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLT   70 (343)
T ss_pred             EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC
Confidence            678999999963212357999999999999999999999999999999999999999999999999875

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.66  E-value=2.1e-16  Score=136.95  Aligned_cols=68  Identities=28%  Similarity=0.419  Sum_probs=62.7

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..+.++|+++.|++    +++++++||++++||+++|+|+|||||||++|+|+|+++|++|++.++|.++..
T Consensus        10 ~~l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~   77 (214)
T PRK13543         10 PLLAAHALAFSRNE----EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATR   77 (214)
T ss_pred             ceEEEeeEEEecCC----ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccc
Confidence            46899999999953    469999999999999999999999999999999999999999999999988753

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.66  E-value=1.7e-16  Score=137.18  Aligned_cols=65  Identities=32%  Similarity=0.606  Sum_probs=60.2

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.++|+++.|++    +++++|+||++++||++||+|+|||||||++|+|+|+.+|++|++.++|.++.
T Consensus         1 i~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~   65 (213)
T cd03301           1 VELENVTKRFGN----VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVT   65 (213)
T ss_pred             CEEEeeEEEECC----eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence            367899999953    46999999999999999999999999999999999999999999999998874

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.66  E-value=1.7e-16  Score=139.18  Aligned_cols=70  Identities=30%  Similarity=0.584  Sum_probs=61.9

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++|+++.|++..+.+++++++||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++..
T Consensus         2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~   71 (233)
T cd03258           2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTL   71 (233)
T ss_pred             eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccc
Confidence            6789999999641111379999999999999999999999999999999999999999999999998753

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.66  E-value=1.8e-16  Score=136.89  Aligned_cols=65  Identities=45%  Similarity=0.711  Sum_probs=60.0

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.++++++.|++    +.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~----~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   65 (210)
T cd03269           1 LEVENVTKRFGR----VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLD   65 (210)
T ss_pred             CEEEEEEEEECC----EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchh
Confidence            368899999952    46999999999999999999999999999999999999999999999998874

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.66  E-value=2e-16  Score=139.30  Aligned_cols=65  Identities=28%  Similarity=0.507  Sum_probs=60.9

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.++++++.|++    +++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|+++|.++.
T Consensus         3 l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   67 (239)
T cd03296           3 IEVRNVSKRFGD----FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDAT   67 (239)
T ss_pred             EEEEeEEEEECC----EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence            679999999953    56999999999999999999999999999999999999999999999998864

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.66  E-value=1.5e-16  Score=139.35  Aligned_cols=66  Identities=45%  Similarity=0.698  Sum_probs=60.5

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++|++|.|++    +.+++|+||++++||++||+|+|||||||++|+|+|+.+|++|+++++|.++..
T Consensus         1 l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~   66 (232)
T cd03218           1 LRAENLSKRYGK----RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITK   66 (232)
T ss_pred             CeEEEEEEEeCC----EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccc
Confidence            368899999953    569999999999999999999999999999999999999999999999988743

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.66  E-value=2.7e-16  Score=142.36  Aligned_cols=70  Identities=26%  Similarity=0.454  Sum_probs=62.4

Q ss_pred             eEEEEeeeEEecccc-ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSK-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~-~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.++|++|.|++.. .++++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|+++|.++.
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   72 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHIT   72 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence            367999999996311 1257999999999999999999999999999999999999999999999999875

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.66  E-value=2.5e-16  Score=140.23  Aligned_cols=65  Identities=28%  Similarity=0.530  Sum_probs=60.7

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.++|+++.|++    +++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   66 (255)
T PRK11248          2 LQISHLYADYGG----KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVE   66 (255)
T ss_pred             EEEEEEEEEeCC----eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence            678999999953    56999999999999999999999999999999999999999999999998875

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.66  E-value=1.9e-16  Score=137.64  Aligned_cols=66  Identities=36%  Similarity=0.491  Sum_probs=60.4

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++|+++.|++    +++++|+||++++||++||+|+|||||||++++|+|+.+|++|++.++|.++.+
T Consensus         1 l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~   66 (222)
T cd03224           1 LEVENLNAGYGK----SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITG   66 (222)
T ss_pred             CEEeeEEeecCC----eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCC
Confidence            367899999953    469999999999999999999999999999999999999999999999988743

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.66  E-value=2.4e-16  Score=138.61  Aligned_cols=66  Identities=39%  Similarity=0.568  Sum_probs=61.1

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++|+++.|++    +.+++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.+
T Consensus         2 l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~   67 (236)
T TIGR03864         2 LEVAGLSFAYGA----RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRR   67 (236)
T ss_pred             EEEEeeEEEECC----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccc
Confidence            678999999953    569999999999999999999999999999999999999999999999988753

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.66  E-value=2.8e-16  Score=137.20  Aligned_cols=67  Identities=28%  Similarity=0.418  Sum_probs=62.2

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ..+.++|+++.|+    ++++++|+||++++||++||+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus         6 ~~i~~~~l~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   72 (225)
T PRK10247          6 PLLQLQNVGYLAG----DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDIS   72 (225)
T ss_pred             ceEEEeccEEeeC----CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcC
Confidence            3689999999995    356999999999999999999999999999999999999999999999998764

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.66  E-value=2.3e-16  Score=148.56  Aligned_cols=67  Identities=28%  Similarity=0.551  Sum_probs=62.6

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|+++.|+    ++.+++|+||++++||++||+|||||||||++|+|+|+.+|++|+|+++|.++.+
T Consensus         3 ~L~~~nls~~y~----~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~   69 (402)
T PRK09536          3 MIDVSDLSVEFG----DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEA   69 (402)
T ss_pred             eEEEeeEEEEEC----CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCc
Confidence            578999999995    3579999999999999999999999999999999999999999999999998764

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.66  E-value=3.5e-16  Score=141.01  Aligned_cols=69  Identities=29%  Similarity=0.499  Sum_probs=63.5

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++++++.|+.  +++++++|+||+|++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.+
T Consensus         5 ~l~~~~l~~~~~~--~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~   73 (279)
T PRK13635          5 IIRVEHISFRYPD--AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSE   73 (279)
T ss_pred             eEEEEEEEEEeCC--CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCc
Confidence            5889999999953  23569999999999999999999999999999999999999999999999998854

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.66  E-value=3.1e-16  Score=135.29  Aligned_cols=66  Identities=27%  Similarity=0.456  Sum_probs=60.9

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.++|++|.|++    +.+++|+||+|++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus         2 ~l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   67 (207)
T PRK13539          2 MLEGEDLACVRGG----RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDID   67 (207)
T ss_pred             EEEEEeEEEEECC----eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCc
Confidence            3789999999953    46999999999999999999999999999999999999999999999998753

>PRK10908 cell division protein FtsE; Provisional

Probab=99.65  E-value=2.9e-16  Score=136.74  Aligned_cols=67  Identities=28%  Similarity=0.518  Sum_probs=61.3

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++|++|.|++   ++.+++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.+
T Consensus         2 l~~~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~   68 (222)
T PRK10908          2 IRFEHVSKAYLG---GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITR   68 (222)
T ss_pred             EEEEeeEEEecC---CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc
Confidence            678999999942   2469999999999999999999999999999999999999999999999988753

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.65  E-value=2.3e-16  Score=136.37  Aligned_cols=65  Identities=23%  Similarity=0.427  Sum_probs=60.2

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.++++++.|++    +++++++||++++||++||+|+|||||||++|+|+|+.+|++|++.++|.++.
T Consensus         1 l~~~~l~~~~~~----~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   65 (213)
T cd03262           1 IEIKNLHKSFGD----FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLT   65 (213)
T ss_pred             CEEEEEEEEECC----eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECC
Confidence            367899999953    56999999999999999999999999999999999999999999999999874

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=3.6e-16  Score=141.44  Aligned_cols=70  Identities=20%  Similarity=0.424  Sum_probs=62.6

Q ss_pred             EEEEeeeEEecccc-ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSK-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~-~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++|+++.|++.. .++++++|+||+|++||++||+|+|||||||++|+|+|+.+|++|+|+++|.++..
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~   73 (286)
T PRK13646          3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITH   73 (286)
T ss_pred             EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECcc
Confidence            78999999996321 12469999999999999999999999999999999999999999999999998753

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.65  E-value=2.8e-16  Score=135.88  Aligned_cols=67  Identities=31%  Similarity=0.472  Sum_probs=60.8

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++++++.|++   ++.+++|+||++++||++||+|+|||||||++++|+|+.+|++|++.++|.++.+
T Consensus         1 l~~~~l~~~~~~---~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~   67 (214)
T cd03292           1 IEFINVTKTYPN---GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSD   67 (214)
T ss_pred             CEEEEEEEEeCC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEccc
Confidence            367899999953   2469999999999999999999999999999999999999999999999998753

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.65  E-value=2.4e-16  Score=137.97  Aligned_cols=65  Identities=34%  Similarity=0.456  Sum_probs=60.2

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.++|+++.|++    +++++|+||++++||++||+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus         1 l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   65 (230)
T TIGR03410         1 LEVSNLNVYYGQ----SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDIT   65 (230)
T ss_pred             CEEEeEEEEeCC----eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECC
Confidence            368899999953    56999999999999999999999999999999999999999999999998875

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=3.9e-16  Score=143.28  Aligned_cols=74  Identities=27%  Similarity=0.443  Sum_probs=64.9

Q ss_pred             CCCeEEEEeeeEEecccc-ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         209 SGDVLVVKRLFKIYANSK-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       209 ~~~~l~~~~l~k~y~~~~-~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ....+.++|+++.|+.+. .++++++|+||+|++||++||+|+|||||||++++|+|+++|++|+|+++|.++.+
T Consensus        18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~   92 (320)
T PRK13631         18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGD   92 (320)
T ss_pred             CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccc
Confidence            344689999999996421 12469999999999999999999999999999999999999999999999988754

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.65  E-value=1.8e-16  Score=136.39  Aligned_cols=64  Identities=33%  Similarity=0.506  Sum_probs=58.7

Q ss_pred             EEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       215 ~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ++|++|.|++   ++.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus         2 ~~~l~~~~~~---~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   65 (205)
T cd03226           2 IENISFSYKK---GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIK   65 (205)
T ss_pred             cccEEEEeCC---cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhh
Confidence            5789999953   156999999999999999999999999999999999999999999999998874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.65  E-value=2.9e-16  Score=131.49  Aligned_cols=67  Identities=28%  Similarity=0.499  Sum_probs=60.5

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.+++++|.|++  ++..+++|+||++++||+++|+|+|||||||++++|+|+.+|++|+++++|.++.
T Consensus         1 l~~~~l~~~~~~--~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~   67 (171)
T cd03228           1 IEFKNVSFSYPG--RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLR   67 (171)
T ss_pred             CEEEEEEEEcCC--CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhh
Confidence            367899999964  1236999999999999999999999999999999999999999999999998874

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.65  E-value=3e-16  Score=136.55  Aligned_cols=70  Identities=24%  Similarity=0.403  Sum_probs=62.8

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ++.++|+++.|+++++++.+++|+||.+++||+++|+|+|||||||++++|+|+++|++|+|+++|.++.
T Consensus         1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~   70 (220)
T TIGR02982         1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELY   70 (220)
T ss_pred             CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhH
Confidence            3678999999964222367999999999999999999999999999999999999999999999999874

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.65  E-value=2.6e-16  Score=132.50  Aligned_cols=67  Identities=27%  Similarity=0.521  Sum_probs=60.5

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ++++++++.|++  +++++++|+||++++||+++|+|+|||||||++|+|+|+.+|++|++.++|.++.
T Consensus         1 i~~~~~~~~~~~--~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~   67 (178)
T cd03247           1 LSINNVSFSYPE--QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVS   67 (178)
T ss_pred             CEEEEEEEEeCC--CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHH
Confidence            357899999964  2246999999999999999999999999999999999999999999999998764

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.65  E-value=1.1e-16  Score=133.28  Aligned_cols=67  Identities=31%  Similarity=0.548  Sum_probs=63.0

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ++.++++|.|++   +++|++|+||.|++||..=+.||+||||||++|+|.+.++||+|+|+++|+|+.+
T Consensus         2 I~f~~V~k~Y~~---g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~   68 (223)
T COG2884           2 IRFENVSKAYPG---GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSR   68 (223)
T ss_pred             eeehhhhhhcCC---CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeeccc
Confidence            678899999975   4779999999999999999999999999999999999999999999999999864

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.65  E-value=3.5e-16  Score=140.14  Aligned_cols=70  Identities=37%  Similarity=0.629  Sum_probs=62.8

Q ss_pred             eEEEEeeeEEecccc-----ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSK-----DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~-----~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.++|++|.|+.+.     +++++++|+||++++||++||+|+|||||||++++|+|+++|++|+|.++|.++.
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   78 (267)
T PRK15112          4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLH   78 (267)
T ss_pred             eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECC
Confidence            588999999996311     1357999999999999999999999999999999999999999999999998875

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.65  E-value=3.2e-16  Score=138.07  Aligned_cols=66  Identities=23%  Similarity=0.415  Sum_probs=61.2

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++++++.|++    +++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|+++|.++..
T Consensus         2 l~~~~l~~~~~~----~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~   67 (240)
T PRK09493          2 IEFKNVSKHFGP----TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND   67 (240)
T ss_pred             EEEEeEEEEECC----eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCc
Confidence            678999999952    469999999999999999999999999999999999999999999999998753

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.65  E-value=3.7e-16  Score=140.12  Aligned_cols=67  Identities=24%  Similarity=0.430  Sum_probs=62.4

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ..+.++|+++.|+    ++.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|+|+++|.++.
T Consensus         6 ~~l~~~~l~~~~~----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~   72 (269)
T PRK11831          6 NLVDMRGVSFTRG----NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIP   72 (269)
T ss_pred             ceEEEeCeEEEEC----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc
Confidence            4689999999995    356999999999999999999999999999999999999999999999998875

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.65  E-value=3.8e-16  Score=139.15  Aligned_cols=68  Identities=24%  Similarity=0.513  Sum_probs=62.3

Q ss_pred             CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ...+.++|+++.|++    +.+++|+||.+++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus        10 ~~~l~i~~l~~~~~~----~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~   77 (257)
T PRK11247         10 GTPLLLNAVSKRYGE----RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA   77 (257)
T ss_pred             CCcEEEEEEEEEECC----cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH
Confidence            356999999999953    56999999999999999999999999999999999999999999999987753

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=4e-16  Score=140.50  Aligned_cols=68  Identities=34%  Similarity=0.593  Sum_probs=62.2

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|++|.|++   ++.+++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|+++|.++..
T Consensus         3 ~l~~~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~   70 (277)
T PRK13652          3 LIETRDLCYSYSG---SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITK   70 (277)
T ss_pred             eEEEEEEEEEeCC---CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc
Confidence            4789999999953   2469999999999999999999999999999999999999999999999998753

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.65  E-value=2.6e-16  Score=136.08  Aligned_cols=70  Identities=27%  Similarity=0.520  Sum_probs=63.5

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++++.|.|..+.....|++++||.|++||.++|+||+||||||++++|.|+.+||+|.+.++|.++..
T Consensus         2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~   71 (226)
T COG1136           2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTK   71 (226)
T ss_pred             cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCc
Confidence            5689999999764444579999999999999999999999999999999999999999999999988753

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.65  E-value=2.2e-16  Score=136.29  Aligned_cols=65  Identities=34%  Similarity=0.633  Sum_probs=59.1

Q ss_pred             EEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       215 ~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ++++++.|++  +++.+++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus         2 ~~~l~~~~~~--~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   66 (211)
T cd03225           2 LKNLSFSYPD--GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLT   66 (211)
T ss_pred             ceeEEEecCC--CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcc
Confidence            5789999953  1256999999999999999999999999999999999999999999999998875

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.65  E-value=2.2e-16  Score=147.79  Aligned_cols=67  Identities=36%  Similarity=0.543  Sum_probs=63.3

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ..+..++++|.|+    +..|.+|+||+|++||+-+|||.||||||||+|||.|.++|++|+|+++|++++
T Consensus         3 ~~l~~~~itK~f~----~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~   69 (501)
T COG3845           3 PALEMRGITKRFP----GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVR   69 (501)
T ss_pred             ceEEEeccEEEcC----CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEec
Confidence            4688999999996    478999999999999999999999999999999999999999999999999875

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.65  E-value=3.7e-16  Score=137.74  Aligned_cols=67  Identities=30%  Similarity=0.465  Sum_probs=61.9

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|+++.|++    +++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus         2 ~i~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~   68 (242)
T TIGR03411         2 ILYLEGLSVSFDG----FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTG   68 (242)
T ss_pred             eEEEEeeEEEcCC----eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCC
Confidence            4789999999953    469999999999999999999999999999999999999999999999988753

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=4e-16  Score=140.29  Aligned_cols=66  Identities=27%  Similarity=0.534  Sum_probs=61.1

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.++|++|.|++   ++++++|+||+|++||++||+|+|||||||++++|+|+.+|++|+|+++|.++.
T Consensus         2 l~~~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   67 (274)
T PRK13644          2 IRLENVSYSYPD---GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTG   67 (274)
T ss_pred             EEEEEEEEEcCC---CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECC
Confidence            678999999952   346999999999999999999999999999999999999999999999999875

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.65  E-value=3.9e-16  Score=134.41  Aligned_cols=69  Identities=23%  Similarity=0.530  Sum_probs=64.8

Q ss_pred             CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ...+++++++|.|+    ++.+++|++|+|++||++|++|++|+||||++|.|.|+.+|++|+|++.|.++.+
T Consensus         6 ~~~I~vr~v~~~fG----~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~   74 (263)
T COG1127           6 EPLIEVRGVTKSFG----DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQ   74 (263)
T ss_pred             cceEEEeeeeeecC----CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhc
Confidence            45799999999995    4789999999999999999999999999999999999999999999999999864

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=4.8e-16  Score=140.87  Aligned_cols=69  Identities=22%  Similarity=0.464  Sum_probs=62.3

Q ss_pred             EEEEeeeEEeccccc-cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~-~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.+++++|.|++..+ ++++++|+||+|++||++||+|+|||||||++|+|+|+.+|++|+|.++|+++.
T Consensus         3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~   72 (290)
T PRK13634          3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVIT   72 (290)
T ss_pred             EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence            789999999964211 256999999999999999999999999999999999999999999999999874

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=4.5e-16  Score=140.33  Aligned_cols=70  Identities=21%  Similarity=0.394  Sum_probs=62.2

Q ss_pred             EEEEeeeEEeccccc-cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~-~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++++++.|++... .+++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++..
T Consensus         3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~   73 (280)
T PRK13649          3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITS   73 (280)
T ss_pred             EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc
Confidence            679999999964211 1469999999999999999999999999999999999999999999999988753

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.64  E-value=2.9e-16  Score=137.12  Aligned_cols=66  Identities=29%  Similarity=0.520  Sum_probs=60.5

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC-----CCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI-----KPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~-----~pt~G~i~i~g~~i~~  282 (288)
                      +.++|+++.|++    +++++|+||++++||++||+|+|||||||++++|+|+.     +|++|+|.++|.++.+
T Consensus         1 i~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~   71 (227)
T cd03260           1 IELRDLNVYYGD----KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYD   71 (227)
T ss_pred             CEEEEEEEEcCC----ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhh
Confidence            468899999953    46999999999999999999999999999999999999     9999999999998753

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=5.7e-16  Score=138.89  Aligned_cols=68  Identities=29%  Similarity=0.532  Sum_probs=62.6

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.++++++.|++  +.+++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|+++|.++.
T Consensus         7 ~l~i~~l~~~~~~--~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~   74 (269)
T PRK13648          7 IIVFKNVSFQYQS--DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAIT   74 (269)
T ss_pred             eEEEEEEEEEcCC--CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECC
Confidence            5899999999964  2246999999999999999999999999999999999999999999999999874

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.64  E-value=2e-16  Score=136.89  Aligned_cols=63  Identities=38%  Similarity=0.669  Sum_probs=58.1

Q ss_pred             EEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       215 ~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ++|+++.|++    +++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus         2 ~~~l~~~~~~----~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~   64 (213)
T cd03235           2 VEDLTVSYGG----HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE   64 (213)
T ss_pred             cccceeEECC----EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH
Confidence            5789999953    46999999999999999999999999999999999999999999999998763

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=4.7e-16  Score=139.86  Aligned_cols=68  Identities=31%  Similarity=0.482  Sum_probs=62.5

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++++++.|+.   ++++++|+||.+++||++||+|+|||||||++++|+|+.+|++|+|+++|.++.+
T Consensus         4 ~l~~~~l~~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~   71 (274)
T PRK13647          4 IIEVEDLHFRYKD---GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNA   71 (274)
T ss_pred             eEEEEEEEEEeCC---CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCC
Confidence            5889999999952   2469999999999999999999999999999999999999999999999998753

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=5.5e-16  Score=139.17  Aligned_cols=70  Identities=34%  Similarity=0.561  Sum_probs=63.7

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..+.++|+++.|++  +++++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++..
T Consensus         6 ~~l~~~nl~~~~~~--~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~   75 (271)
T PRK13632          6 VMIKVENVSFSYPN--SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISK   75 (271)
T ss_pred             eEEEEEeEEEEcCC--CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCc
Confidence            36889999999953  23579999999999999999999999999999999999999999999999998753

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.64  E-value=2.9e-16  Score=137.83  Aligned_cols=66  Identities=41%  Similarity=0.673  Sum_probs=60.3

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++|+++.|++    +++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|+++|.++.+
T Consensus         1 l~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~   66 (236)
T cd03219           1 LEVRGLTKRFGG----LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITG   66 (236)
T ss_pred             CeeeeeEEEECC----EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCC
Confidence            357899999952    469999999999999999999999999999999999999999999999988753

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.64  E-value=2.6e-16  Score=135.28  Aligned_cols=63  Identities=21%  Similarity=0.458  Sum_probs=57.9

Q ss_pred             EEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       215 ~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ++|+++.|++    +++++|+||.+++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus         1 i~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   63 (206)
T TIGR03608         1 LKNISKKFGD----KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETP   63 (206)
T ss_pred             CcceEEEECC----EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcc
Confidence            4688999953    46999999999999999999999999999999999999999999999999853

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.64  E-value=3.3e-16  Score=137.88  Aligned_cols=67  Identities=36%  Similarity=0.628  Sum_probs=60.7

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++|+++.|++   ++++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|+++|.++..
T Consensus         1 l~~~~l~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~   67 (241)
T cd03256           1 IEVENLSKTYPN---GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINK   67 (241)
T ss_pred             CEEeeEEEecCC---ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccc
Confidence            357899999953   2569999999999999999999999999999999999999999999999988753

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=4.8e-16  Score=136.67  Aligned_cols=67  Identities=33%  Similarity=0.510  Sum_probs=62.1

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.+++++|.|+    ++++++++||++++||++||+|+|||||||++++|+|+.+|++|++.++|.++.+
T Consensus         5 ~l~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~   71 (237)
T PRK11614          5 MLSFDKVSAHYG----KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITD   71 (237)
T ss_pred             EEEEEeEEEeeC----CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCC
Confidence            588999999995    3579999999999999999999999999999999999999999999999988753

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.64  E-value=4.9e-16  Score=130.31  Aligned_cols=66  Identities=45%  Similarity=0.756  Sum_probs=60.3

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++++++.|++    +++++++||++++||+++|+|+|||||||++|+|+|+.+|++|++.++|.++.+
T Consensus         1 l~~~~l~~~~~~----~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~   66 (173)
T cd03230           1 IEVRNLSKRYGK----KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKK   66 (173)
T ss_pred             CEEEEEEEEECC----eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccc
Confidence            357899999953    469999999999999999999999999999999999999999999999988753

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.64  E-value=4.4e-16  Score=137.39  Aligned_cols=67  Identities=37%  Similarity=0.657  Sum_probs=60.7

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++++++.|++   .+.+++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.+
T Consensus         1 l~~~~l~~~~~~---~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~   67 (242)
T cd03295           1 IEFENVTKRYGG---GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIRE   67 (242)
T ss_pred             CEEEEEEEEeCC---cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCc
Confidence            357899999953   1569999999999999999999999999999999999999999999999988753

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.64  E-value=4.9e-16  Score=139.02  Aligned_cols=70  Identities=29%  Similarity=0.544  Sum_probs=62.6

Q ss_pred             eEEEEeeeEEecccc-----ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSK-----DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~-----~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.+++++|.|++.+     +++.+++|+||++++||++||+|+|||||||++++|+|+++|++|+|.++|.++.
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~   76 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLY   76 (265)
T ss_pred             eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcc
Confidence            478999999996311     1357999999999999999999999999999999999999999999999998875

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.64  E-value=5.3e-16  Score=130.11  Aligned_cols=67  Identities=28%  Similarity=0.558  Sum_probs=60.7

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.++|+++.|++  +++++++++||.+++||+++|+|+||+||||++++|+|+.+|++|++.++|.++.
T Consensus         1 i~~~~l~~~~~~--~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~   67 (173)
T cd03246           1 LEVENVSFRYPG--AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADIS   67 (173)
T ss_pred             CEEEEEEEEcCC--CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcc
Confidence            357899999963  2356999999999999999999999999999999999999999999999998874

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.64  E-value=2.2e-16  Score=143.86  Aligned_cols=55  Identities=49%  Similarity=0.728  Sum_probs=52.1

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccch
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS  283 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~  283 (288)
                      +++++|+||+|++||++||+|||||||||++|+|+|+.+|++|+|.++|.++...
T Consensus         6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~   60 (302)
T TIGR01188         6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE   60 (302)
T ss_pred             eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC
Confidence            5799999999999999999999999999999999999999999999999987543

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=6e-16  Score=143.63  Aligned_cols=69  Identities=25%  Similarity=0.568  Sum_probs=63.6

Q ss_pred             CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.+.+++++|.|+    ++.+++|+||++++||+++|+|||||||||++|+|+|+++|++|+|.++|.++.+
T Consensus         4 ~~~l~~~~l~~~~~----~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~   72 (351)
T PRK11432          4 KNFVVLKNITKRFG----SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTH   72 (351)
T ss_pred             CcEEEEEeEEEEEC----CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCC
Confidence            34789999999995    3569999999999999999999999999999999999999999999999998753

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.64  E-value=4.5e-16  Score=137.21  Aligned_cols=66  Identities=42%  Similarity=0.657  Sum_probs=61.4

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.++++++.|++    +++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus         3 ~l~~~~l~~~~~~----~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   68 (241)
T PRK10895          3 TLTAKNLAKAYKG----RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDIS   68 (241)
T ss_pred             eEEEeCcEEEeCC----EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence            4788999999953    56999999999999999999999999999999999999999999999998874

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.64  E-value=3.9e-16  Score=137.61  Aligned_cols=66  Identities=32%  Similarity=0.594  Sum_probs=60.9

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.++|+++.|+.   ++++++|+||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~---~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   67 (243)
T TIGR02315         2 LEVENLSKVYPN---GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDIT   67 (243)
T ss_pred             eEEEeeeeecCC---CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhh
Confidence            578999999952   356999999999999999999999999999999999999999999999998875

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=5.8e-16  Score=137.54  Aligned_cols=68  Identities=38%  Similarity=0.542  Sum_probs=62.8

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..+.++|++|.|+    ++++++++||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++..
T Consensus         4 ~~l~~~~l~~~~~----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~   71 (255)
T PRK11300          4 PLLSVSGLMMRFG----GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEG   71 (255)
T ss_pred             ceEEEeeEEEEEC----CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCC
Confidence            3688999999995    3579999999999999999999999999999999999999999999999998753

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=5.4e-16  Score=138.72  Aligned_cols=67  Identities=22%  Similarity=0.415  Sum_probs=62.4

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ..+.++++++.|++    +.+++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus        10 ~~l~i~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   76 (265)
T PRK10575         10 TTFALRNVSFRVPG----RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLE   76 (265)
T ss_pred             ceEEEeeEEEEECC----EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehh
Confidence            46899999999953    46999999999999999999999999999999999999999999999998874

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.64  E-value=2.8e-16  Score=138.25  Aligned_cols=54  Identities=44%  Similarity=0.684  Sum_probs=51.0

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+++++|+||.+++||+++|+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus        33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~   86 (236)
T cd03267          33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPW   86 (236)
T ss_pred             CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcc
Confidence            357999999999999999999999999999999999999999999999998754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.64  E-value=5.6e-16  Score=136.72  Aligned_cols=66  Identities=26%  Similarity=0.400  Sum_probs=61.3

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.++|+++.|++    +++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus         3 ~l~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~   68 (241)
T PRK14250          3 EIEFKEVSYSSFG----KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIK   68 (241)
T ss_pred             eEEEEeEEEEeCC----eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhh
Confidence            3789999999953    46999999999999999999999999999999999999999999999998874

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=6.5e-16  Score=139.88  Aligned_cols=69  Identities=25%  Similarity=0.425  Sum_probs=61.9

Q ss_pred             EEEEeeeEEecccc-ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSK-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~-~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.++++++.|+... ..+++++|+||.|++||++||+|+|||||||++++|+|+.+|++|+|+++|.++.
T Consensus         2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~   71 (288)
T PRK13643          2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVS   71 (288)
T ss_pred             EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence            67899999996321 1236999999999999999999999999999999999999999999999999874

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.63  E-value=7.5e-16  Score=131.39  Aligned_cols=71  Identities=28%  Similarity=0.324  Sum_probs=62.1

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC--CCCCceEEEcccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVMNHSIR  281 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~--~pt~G~i~i~g~~i~  281 (288)
                      ..+.++++++.|++.++++++++|+||++++||+++|+|+|||||||++|+|+|+.  +|++|++.++|.++.
T Consensus         2 ~~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~   74 (192)
T cd03232           2 SVLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD   74 (192)
T ss_pred             cEEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH
Confidence            35789999999964222357999999999999999999999999999999999986  489999999998874

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.63  E-value=6.5e-16  Score=137.70  Aligned_cols=66  Identities=27%  Similarity=0.518  Sum_probs=61.2

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.++|++|.|++    +.+++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus         2 ~l~~~~l~~~~~~----~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~   67 (258)
T PRK13548          2 MLEARNLSVRLGG----RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLA   67 (258)
T ss_pred             eEEEEeEEEEeCC----eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcc
Confidence            3779999999953    56999999999999999999999999999999999999999999999998764

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.63  E-value=4.1e-16  Score=136.17  Aligned_cols=65  Identities=35%  Similarity=0.461  Sum_probs=59.2

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.++++++.|+    ++++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|+++|+++.
T Consensus        23 l~~~~~~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~   87 (224)
T cd03220          23 LGILGRKGEVG----EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSS   87 (224)
T ss_pred             hhhhhhhhhcC----CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEch
Confidence            66778888884    367999999999999999999999999999999999999999999999998753

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.63  E-value=7.9e-16  Score=137.85  Aligned_cols=68  Identities=16%  Similarity=0.275  Sum_probs=62.3

Q ss_pred             CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEcccccc
Q psy7219         210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR  281 (288)
Q Consensus       210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~  281 (288)
                      ...+.++|+++.|++    +++++|+||+|++||++||+|+|||||||++++|+|+.+|     ++|+|+++|.++.
T Consensus        17 ~~~l~~~nl~~~~~~----~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~   89 (267)
T PRK14235         17 EIKMRARDVSVFYGE----KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY   89 (267)
T ss_pred             CceEEEEeEEEEECC----EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECc
Confidence            447999999999953    4699999999999999999999999999999999999975     8999999999875

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.63  E-value=6.2e-16  Score=138.90  Aligned_cols=67  Identities=33%  Similarity=0.532  Sum_probs=61.9

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.++|+++.|++   ++++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus         6 ~l~~~~l~~~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~   72 (272)
T PRK15056          6 GIVVNDVTVTWRN---GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR   72 (272)
T ss_pred             eEEEEeEEEEecC---CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhH
Confidence            5889999999952   356999999999999999999999999999999999999999999999998864

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.63  E-value=6.1e-16  Score=134.49  Aligned_cols=68  Identities=25%  Similarity=0.435  Sum_probs=62.2

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++|+++.|+.  +++++++|+||++++||++||+|+|||||||++++|+|+.+|++|++.++|.++.+
T Consensus         3 l~~~~l~~~~~~--~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~   70 (221)
T cd03244           3 IEFKNVSLRYRP--NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISK   70 (221)
T ss_pred             EEEEEEEEecCC--CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHh
Confidence            689999999964  23579999999999999999999999999999999999999999999999988753

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.63  E-value=6.1e-16  Score=135.66  Aligned_cols=67  Identities=27%  Similarity=0.472  Sum_probs=60.6

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.++++++.|++  +++++++|+||++++||++||+|+|||||||++++|+|+.+|++|+++++|.++.
T Consensus         1 i~~~~l~~~~~~--~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   67 (234)
T cd03251           1 VEFKNVTFRYPG--DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVR   67 (234)
T ss_pred             CEEEEEEEEeCC--CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhh
Confidence            368899999964  2236999999999999999999999999999999999999999999999998764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.63  E-value=7.8e-16  Score=138.82  Aligned_cols=72  Identities=28%  Similarity=0.499  Sum_probs=64.0

Q ss_pred             CeEEEEeeeEEecccc--ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSK--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~--~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..+.++|++|.|++..  +++++++|+||+|++||++||+|+|||||||++++|+|+.+|++|+|+++|.++.+
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~   76 (280)
T PRK13633          3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSD   76 (280)
T ss_pred             ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccc
Confidence            3588999999996421  13579999999999999999999999999999999999999999999999998753

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.63  E-value=5.7e-16  Score=136.15  Aligned_cols=67  Identities=25%  Similarity=0.450  Sum_probs=60.7

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.++|+++.|+.  +++++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus         1 i~~~~l~~~~~~--~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   67 (237)
T cd03252           1 ITFEHVRFRYKP--DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLA   67 (237)
T ss_pred             CEEEEEEEecCC--CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehH
Confidence            357899999953  2357999999999999999999999999999999999999999999999998864

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.63  E-value=6.1e-16  Score=138.83  Aligned_cols=65  Identities=26%  Similarity=0.530  Sum_probs=60.8

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.++|+++.|++    +.+++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~----~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~   66 (271)
T PRK13638          2 LATSDLWFRYQD----EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLD   66 (271)
T ss_pred             eEEEEEEEEcCC----cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcc
Confidence            678999999953    56999999999999999999999999999999999999999999999999874

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.63  E-value=7.4e-16  Score=139.18  Aligned_cols=67  Identities=36%  Similarity=0.575  Sum_probs=62.4

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.++|+++.|++   ++.+++|+||++++||++||+|+|||||||++|+|+|+.+|++|++.++|.++.
T Consensus         5 ~l~~~~l~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~   71 (283)
T PRK13636          5 ILKVEELNYNYSD---GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPID   71 (283)
T ss_pred             eEEEEeEEEEeCC---CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECC
Confidence            6889999999952   356999999999999999999999999999999999999999999999999874

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.63  E-value=7.6e-16  Score=143.11  Aligned_cols=67  Identities=31%  Similarity=0.511  Sum_probs=62.4

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|++|.|++    +.+++|+||++++||+++|+|||||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus         4 ~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~   70 (353)
T TIGR03265         4 YLSIDNIRKRFGA----FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITR   70 (353)
T ss_pred             EEEEEEEEEEeCC----eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCC
Confidence            5889999999953    569999999999999999999999999999999999999999999999998753

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.63  E-value=8e-16  Score=138.39  Aligned_cols=66  Identities=38%  Similarity=0.616  Sum_probs=61.2

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.++|+++.|++   ++++++|+||+|++||++||+|+|||||||++|+|+|+.+|++|+|+++|.++.
T Consensus         2 l~~~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~   67 (275)
T PRK13639          2 LETRDLKYSYPD---GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIK   67 (275)
T ss_pred             EEEEEEEEEeCC---CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECc
Confidence            678999999953   346999999999999999999999999999999999999999999999999874

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.63  E-value=7.1e-16  Score=130.15  Aligned_cols=63  Identities=35%  Similarity=0.629  Sum_probs=58.8

Q ss_pred             EEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       215 ~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +++++|.|++    +++++++||++++||+++|+|+|||||||++++|+|+.+|++|+|+++|.++.
T Consensus         2 ~~~l~~~~~~----~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~   64 (180)
T cd03214           2 VENLSVGYGG----RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLA   64 (180)
T ss_pred             eeEEEEEECC----eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence            6789999953    46999999999999999999999999999999999999999999999999875

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.63  E-value=7.5e-16  Score=133.83  Aligned_cols=67  Identities=33%  Similarity=0.575  Sum_probs=61.4

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.+++++|.|++  +++.+++|+||++++||++||+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus         3 l~~~~l~~~~~~--~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~   69 (220)
T cd03245           3 IEFRNVSFSYPN--QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIR   69 (220)
T ss_pred             EEEEEEEEEcCC--CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhH
Confidence            679999999953  2356999999999999999999999999999999999999999999999998764

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.63  E-value=6.8e-16  Score=136.56  Aligned_cols=66  Identities=23%  Similarity=0.412  Sum_probs=61.1

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC-----CceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-----SGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt-----~G~i~i~g~~i~~  282 (288)
                      +.++|+++.|++    +.+++|+||++++||++||+|+|||||||++++|+|+.+|+     +|+|.++|.++.+
T Consensus         2 l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~   72 (247)
T TIGR00972         2 IEIENLNLFYGE----KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYD   72 (247)
T ss_pred             EEEEEEEEEECC----eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccc
Confidence            678999999953    46999999999999999999999999999999999999998     9999999998753

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.63  E-value=7.5e-16  Score=137.80  Aligned_cols=68  Identities=21%  Similarity=0.381  Sum_probs=63.0

Q ss_pred             CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ...+.+++++|.|++    +.+++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus         5 ~~~l~i~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~   72 (265)
T PRK10253          5 VARLRGEQLTLGYGK----YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQ   72 (265)
T ss_pred             ccEEEEEEEEEEECC----EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhh
Confidence            357899999999953    46999999999999999999999999999999999999999999999998874

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.63  E-value=9.2e-16  Score=138.93  Aligned_cols=70  Identities=21%  Similarity=0.340  Sum_probs=62.3

Q ss_pred             eEEEEeeeEEecccc-ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSK-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~-~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.++|++|.|+++. ...++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus         6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~   76 (289)
T PRK13645          6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIP   76 (289)
T ss_pred             eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcc
Confidence            488999999996421 0135999999999999999999999999999999999999999999999998874

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.63  E-value=9.2e-16  Score=138.29  Aligned_cols=70  Identities=30%  Similarity=0.565  Sum_probs=63.1

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|+++.|++. +.+.+++|+||+|++||++||+|+|||||||++++|+|+.+|++|+|+++|.++.+
T Consensus         4 ~l~~~~l~~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~   73 (279)
T PRK13650          4 IIEVKNLTFKYKED-QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTE   73 (279)
T ss_pred             eEEEEeEEEEcCCC-CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCc
Confidence            58899999999632 12469999999999999999999999999999999999999999999999998853

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.63  E-value=9.3e-16  Score=132.13  Aligned_cols=69  Identities=30%  Similarity=0.439  Sum_probs=62.8

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ..+.++++++.|+.  ..+++++|+||.+++||+++|+|+||+||||++++|+|+.+|++|++.++|.++.
T Consensus         5 ~~l~~~~l~~~~~~--~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   73 (207)
T cd03369           5 GEIEVENLSVRYAP--DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDIS   73 (207)
T ss_pred             CeEEEEEEEEEeCC--CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhH
Confidence            45889999999964  2247999999999999999999999999999999999999999999999998874

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.63  E-value=2.1e-16  Score=132.26  Aligned_cols=68  Identities=25%  Similarity=0.474  Sum_probs=63.2

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchh
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM  284 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~  284 (288)
                      +.++|++|.|+    ++++++|+|+++++|.+.+++|||||||||+++|++.+.++++|+++++|+++.+-.
T Consensus         2 I~i~nv~K~y~----~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~   69 (252)
T COG4604           2 ITIENVSKSYG----TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTP   69 (252)
T ss_pred             eeehhhhHhhC----CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCC
Confidence            57899999995    578999999999999999999999999999999999999999999999999986543

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.63  E-value=7.2e-16  Score=137.16  Aligned_cols=66  Identities=27%  Similarity=0.479  Sum_probs=61.1

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++|+++.|++    +.+++|+||++++||++||+|+|||||||++++|+|+.+|++|+++++|.++.+
T Consensus         2 l~~~~l~~~~~~----~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~   67 (256)
T TIGR03873         2 LRLSRVSWSAGG----RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHG   67 (256)
T ss_pred             ceEEeEEEEECC----EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEccc
Confidence            578999999953    569999999999999999999999999999999999999999999999988753

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.63  E-value=8.6e-16  Score=142.74  Aligned_cols=66  Identities=26%  Similarity=0.480  Sum_probs=61.6

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.+++++|.|++    +.+++|+||++++||+++|+|+|||||||++|+|+|+.+|++|+|+++|.++..
T Consensus         3 L~i~~l~~~~~~----~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~   68 (353)
T PRK10851          3 IEIANIKKSFGR----TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSR   68 (353)
T ss_pred             EEEEEEEEEeCC----eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC
Confidence            789999999953    569999999999999999999999999999999999999999999999998753

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.63  E-value=1.2e-15  Score=136.64  Aligned_cols=69  Identities=29%  Similarity=0.406  Sum_probs=62.1

Q ss_pred             CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEccccccc
Q psy7219         210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIRD  282 (288)
Q Consensus       210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~~  282 (288)
                      ...+.++|+++.|+    ++.+++|+||++++||++||+|+|||||||++|+|+|+.+     |++|++.++|.++..
T Consensus        19 ~~~l~~~~l~~~~~----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~   92 (268)
T PRK14248         19 EHILEVKDLSIYYG----EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD   92 (268)
T ss_pred             CceEEEEEEEEEeC----CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence            34689999999995    3569999999999999999999999999999999999864     799999999998753

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.63  E-value=1.1e-15  Score=141.03  Aligned_cols=71  Identities=25%  Similarity=0.396  Sum_probs=63.8

Q ss_pred             CeEEEEeeeEEecccc---------ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         211 DVLVVKRLFKIYANSK---------DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~---------~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ..+.++||+|.|...+         +...+++|+||+|++||++||+|+|||||||++++|+|+.+|++|+|+++|.++.
T Consensus         7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~   86 (331)
T PRK15079          7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL   86 (331)
T ss_pred             ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence            4689999999996321         1256999999999999999999999999999999999999999999999999875

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.63  E-value=8.1e-16  Score=143.09  Aligned_cols=68  Identities=26%  Similarity=0.471  Sum_probs=62.4

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.+++++|.|++   ++.+++|+||++++||+++|+|||||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus         3 ~l~i~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~   70 (356)
T PRK11650          3 GLKLQAVRKSYDG---KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNE   70 (356)
T ss_pred             EEEEEeEEEEeCC---CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCC
Confidence            4789999999942   3569999999999999999999999999999999999999999999999998753

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.62  E-value=1.2e-15  Score=133.05  Aligned_cols=72  Identities=21%  Similarity=0.399  Sum_probs=64.0

Q ss_pred             CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ...+.++++++.|++. +++++++++||.+++||++||+|+|||||||++++|+|+.+|++|++.++|.++.+
T Consensus         9 ~~~l~~~~l~~~~~~~-~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~   80 (226)
T cd03248           9 KGIVKFQNVTFAYPTR-PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQ   80 (226)
T ss_pred             CceEEEEEEEEEeCCC-CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHH
Confidence            3468999999999642 12469999999999999999999999999999999999999999999999988743

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.62  E-value=7.9e-16  Score=136.57  Aligned_cols=65  Identities=22%  Similarity=0.361  Sum_probs=60.1

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.++|+++.|++    +++++|+||++++||++||+|+|||||||++|+|+|+.+|++|++.++|.++.
T Consensus         1 i~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~   65 (252)
T TIGR03005         1 VRFSDVTKRFGI----LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLY   65 (252)
T ss_pred             CEEEEEEEEeCC----eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence            368899999953    46999999999999999999999999999999999999999999999998874

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.62  E-value=6.1e-16  Score=130.86  Aligned_cols=66  Identities=29%  Similarity=0.496  Sum_probs=59.8

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ++.+|++..-.    ++..++++||+.++||..+|+|||||||||++|.|+|+..|++|++.++|.++.+
T Consensus         2 i~a~nls~~~~----Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~   67 (259)
T COG4559           2 IRAENLSYSLA----GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNS   67 (259)
T ss_pred             eeeeeeEEEee----cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhh
Confidence            56778876653    4679999999999999999999999999999999999999999999999998754

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.62  E-value=6.8e-16  Score=136.01  Aligned_cols=65  Identities=28%  Similarity=0.436  Sum_probs=59.4

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC--CCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~--~pt~G~i~i~g~~i~  281 (288)
                      +.++|++|.|++    +.+++|+||.+++||++||+|+|||||||++|+|+|+.  +|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~   67 (243)
T TIGR01978         1 LKIKDLHVSVED----KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL   67 (243)
T ss_pred             CeEeeEEEEECC----EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecC
Confidence            468899999953    56999999999999999999999999999999999995  799999999998874

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.62  E-value=1.2e-15  Score=140.42  Aligned_cols=72  Identities=28%  Similarity=0.449  Sum_probs=64.2

Q ss_pred             CeEEEEeeeEEeccccc------cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKD------TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~------~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..+.++|++|.|+.+.+      ...+++|+||+|++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.+
T Consensus         4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~   81 (327)
T PRK11308          4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLK   81 (327)
T ss_pred             ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCc
Confidence            46899999999964211      2579999999999999999999999999999999999999999999999998753

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.62  E-value=1.1e-15  Score=134.82  Aligned_cols=64  Identities=25%  Similarity=0.422  Sum_probs=60.3

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  280 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i  280 (288)
                      +.++|+++.|++    +.+++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++
T Consensus         3 l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   66 (242)
T PRK11124          3 IQLNGINCFYGA----HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHF   66 (242)
T ss_pred             EEEEeeEEEECC----eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEec
Confidence            678999999953    4699999999999999999999999999999999999999999999999876

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.62  E-value=8.7e-16  Score=135.05  Aligned_cols=68  Identities=26%  Similarity=0.432  Sum_probs=60.9

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.++|+++.|++. +++++++|+||++++||++||+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus         1 l~i~~l~~~~~~~-~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~   68 (238)
T cd03249           1 IEFKNVSFRYPSR-PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIR   68 (238)
T ss_pred             CeEEEEEEecCCC-CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehh
Confidence            3578999999641 1357999999999999999999999999999999999999999999999998764

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.62  E-value=1.2e-15  Score=129.07  Aligned_cols=63  Identities=35%  Similarity=0.456  Sum_probs=59.5

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.+++++|.|        +++++||++++||+++|+|+|||||||++++|+|+.+|++|++.++|.++.+
T Consensus         4 ~l~~~~l~~~~--------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~   66 (182)
T cd03215           4 VLEVRGLSVKG--------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTR   66 (182)
T ss_pred             EEEEeccEEEe--------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCc
Confidence            58899999886        8999999999999999999999999999999999999999999999988754

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.62  E-value=8.4e-16  Score=136.14  Aligned_cols=66  Identities=27%  Similarity=0.455  Sum_probs=61.5

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.++|+++.|++    +++++|+||++++||++||+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus         3 ~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   68 (250)
T PRK11264          3 AIEVKNLVKKFHG----QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITID   68 (250)
T ss_pred             cEEEeceEEEECC----eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcc
Confidence            4789999999953    46999999999999999999999999999999999999999999999998875

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.62  E-value=9.7e-16  Score=133.92  Aligned_cols=67  Identities=28%  Similarity=0.493  Sum_probs=61.4

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.++|+++.|++   ++++++|+||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus         2 ~l~~~~l~~~~~~---~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   68 (229)
T cd03254           2 EIEFENVNFSYDE---KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIR   68 (229)
T ss_pred             eEEEEEEEEecCC---CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHH
Confidence            3789999999953   246999999999999999999999999999999999999999999999998875

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.62  E-value=1.3e-15  Score=124.10  Aligned_cols=62  Identities=32%  Similarity=0.571  Sum_probs=57.3

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~  278 (288)
                      ++++++++.|++    .++++++||++++||+++|+|+|||||||++++|+|+.+|++|+++++|.
T Consensus         1 l~~~~l~~~~~~----~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~   62 (144)
T cd03221           1 IELENLSKTYGG----KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST   62 (144)
T ss_pred             CEEEEEEEEECC----ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe
Confidence            367899999953    36999999999999999999999999999999999999999999999984

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.62  E-value=1.2e-15  Score=135.84  Aligned_cols=64  Identities=30%  Similarity=0.561  Sum_probs=60.6

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS  279 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~  279 (288)
                      .+.++++++.|++    +++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.+
T Consensus         6 ~l~~~~l~~~~~~----~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~   69 (258)
T PRK11701          6 LLSVRGLTKLYGP----RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRD   69 (258)
T ss_pred             eEEEeeeEEEcCC----ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCcc
Confidence            5889999999953    469999999999999999999999999999999999999999999999987

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.62  E-value=1.4e-15  Score=138.86  Aligned_cols=68  Identities=25%  Similarity=0.448  Sum_probs=60.9

Q ss_pred             EEEEeeeEEecccc-ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219         213 LVVKRLFKIYANSK-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  280 (288)
Q Consensus       213 l~~~~l~k~y~~~~-~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i  280 (288)
                      +.++|+++.|++.. ..+++++|+||.|++||++||+|+|||||||++++|+|+.+|++|+|+++|.++
T Consensus         3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~   71 (305)
T PRK13651          3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDE   71 (305)
T ss_pred             EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceec
Confidence            78999999996421 124699999999999999999999999999999999999999999999998765

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.62  E-value=1.2e-15  Score=135.82  Aligned_cols=67  Identities=25%  Similarity=0.453  Sum_probs=62.3

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ..+.++++++.|++    +.+++|+||++++||++||+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus         4 ~~l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~   70 (257)
T PRK10619          4 NKLNVIDLHKRYGE----HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTIN   70 (257)
T ss_pred             ccEEEeeeEEEECC----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcc
Confidence            45899999999953    56999999999999999999999999999999999999999999999998874

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.62  E-value=1e-15  Score=136.07  Aligned_cols=66  Identities=30%  Similarity=0.505  Sum_probs=61.1

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.++|+++.|+    ++++++|+||++++||++||+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus         2 ~l~~~~l~~~~~----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   67 (255)
T PRK11231          2 TLRTENLTVGYG----TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPIS   67 (255)
T ss_pred             EEEEEeEEEEEC----CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhH
Confidence            378999999995    256999999999999999999999999999999999999999999999998764

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.62  E-value=8.8e-16  Score=132.60  Aligned_cols=65  Identities=37%  Similarity=0.627  Sum_probs=59.5

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++++++.|++    +++++|+||++++| ++||+|+|||||||++++|+|+.+|++|+|.++|.++.+
T Consensus         1 i~~~~~~~~~~~----~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~   65 (211)
T cd03264           1 LQLENLTKRYGK----KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLK   65 (211)
T ss_pred             CEEEEEEEEECC----EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCcccc
Confidence            368899999953    46999999999999 999999999999999999999999999999999988753

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.62  E-value=1.1e-15  Score=142.92  Aligned_cols=67  Identities=24%  Similarity=0.484  Sum_probs=62.0

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.+++++|.|++    +.+++|+||++++||+++|+|+|||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus         3 ~l~i~~l~~~~~~----~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~   69 (369)
T PRK11000          3 SVTLRNVTKAYGD----VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMND   69 (369)
T ss_pred             EEEEEEEEEEeCC----eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCC
Confidence            3789999999953    569999999999999999999999999999999999999999999999988753

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.62  E-value=1.1e-15  Score=133.08  Aligned_cols=65  Identities=45%  Similarity=0.686  Sum_probs=59.8

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.+++++|.|++    +++++|+||++++||++||+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus         1 l~l~~v~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~   65 (223)
T TIGR03740         1 LETKNLSKRFGK----QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWT   65 (223)
T ss_pred             CEEEeEEEEECC----EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecc
Confidence            367899999953    56999999999999999999999999999999999999999999999998764

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.62  E-value=1.2e-15  Score=140.60  Aligned_cols=71  Identities=25%  Similarity=0.349  Sum_probs=63.1

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC----CCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK----PTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~----pt~G~i~i~g~~i~~  282 (288)
                      .+.++|++|.|+..++...+++|+||+|++||++||+|+|||||||++++|+|+.+    |++|+|+++|.++.+
T Consensus         3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~   77 (330)
T PRK15093          3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLR   77 (330)
T ss_pred             eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCc
Confidence            57899999999643334579999999999999999999999999999999999997    589999999998753

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.61  E-value=1.4e-15  Score=135.01  Aligned_cols=68  Identities=21%  Similarity=0.311  Sum_probs=61.5

Q ss_pred             CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEcccccc
Q psy7219         210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR  281 (288)
Q Consensus       210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~  281 (288)
                      ...+.++++++.|++    +.+++|+||++++||++||+|+|||||||++|+|+|+.+     |++|+|.++|.++.
T Consensus         4 ~~~l~~~~l~~~~~~----~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~   76 (253)
T PRK14242          4 PPKMEARGLSFFYGD----FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIY   76 (253)
T ss_pred             CcEEEEeeeEEEECC----eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcc
Confidence            346899999999953    469999999999999999999999999999999999864     68999999998875

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.61  E-value=2.8e-14  Score=152.65  Aligned_cols=71  Identities=24%  Similarity=0.322  Sum_probs=63.5

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC---CCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK---PTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~---pt~G~i~i~g~~i~~  282 (288)
                      .+..+|+++.|+.+++++.+++|+|+.+++||++||+|+|||||||++++|+|..+   |++|+|.++|+++.+
T Consensus       759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~  832 (1394)
T TIGR00956       759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS  832 (1394)
T ss_pred             eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh
Confidence            47899999999643345679999999999999999999999999999999999998   789999999998754

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.61  E-value=1.6e-15  Score=129.59  Aligned_cols=64  Identities=28%  Similarity=0.427  Sum_probs=57.8

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.++++++.|++    +... ++||++++||++||+|+|||||||++++|+|+.+|++|+++++|.++.
T Consensus         2 l~~~~l~~~~~~----~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~   65 (195)
T PRK13541          2 LSLHQLQFNIEQ----KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNIN   65 (195)
T ss_pred             eEEEEeeEEECC----cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccC
Confidence            678999999952    3445 599999999999999999999999999999999999999999998874

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.61  E-value=1.5e-15  Score=134.80  Aligned_cols=64  Identities=33%  Similarity=0.551  Sum_probs=59.9

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS  279 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~  279 (288)
                      .+.++|+++.|++    +.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|.+
T Consensus         3 ~l~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~   66 (253)
T TIGR02323         3 LLQVSGLSKSYGG----GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRS   66 (253)
T ss_pred             eEEEeeeEEEeCC----ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccc
Confidence            5889999999953    468999999999999999999999999999999999999999999999876

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.61  E-value=1.3e-15  Score=140.14  Aligned_cols=71  Identities=24%  Similarity=0.415  Sum_probs=62.8

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC----CCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK----PTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~----pt~G~i~i~g~~i~~  282 (288)
                      .+.++|+++.|+.+.+...||+|+||+|++||++||+|+|||||||++++|+|+.+    |++|+|.++|.++.+
T Consensus         3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~   77 (326)
T PRK11022          3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQR   77 (326)
T ss_pred             eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCc
Confidence            47899999999653222569999999999999999999999999999999999998    489999999998753

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.61  E-value=1.6e-15  Score=139.78  Aligned_cols=72  Identities=29%  Similarity=0.471  Sum_probs=64.5

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC---CceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt---~G~i~i~g~~i~~  282 (288)
                      ..+.++|+++.|+..++...+++|+||+|++||++||+|+|||||||++++|+|+.+|+   +|+|+++|.++.+
T Consensus        11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~   85 (330)
T PRK09473         11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILN   85 (330)
T ss_pred             ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCc
Confidence            46899999999964333457999999999999999999999999999999999999996   9999999998753

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.61  E-value=1.7e-15  Score=129.40  Aligned_cols=71  Identities=24%  Similarity=0.326  Sum_probs=63.0

Q ss_pred             eEEEEeeeEEecccc--ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC--CCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSK--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~--~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~--~pt~G~i~i~g~~i~~  282 (288)
                      .+.++++++.|++.+  .++++++|+||++++||+++|+|+|||||||++++|+|+.  +|++|++.++|.++..
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~   77 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK   77 (194)
T ss_pred             EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch
Confidence            478999999996310  1257999999999999999999999999999999999999  9999999999998753

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.61  E-value=1.4e-15  Score=130.77  Aligned_cols=65  Identities=23%  Similarity=0.392  Sum_probs=57.6

Q ss_pred             EEEEeeeEEeccccc-cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219         213 LVVKRLFKIYANSKD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  277 (288)
Q Consensus       213 l~~~~l~k~y~~~~~-~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g  277 (288)
                      +.++|++|.|++.+. .+++++|+||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g   66 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG   66 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC
Confidence            468999999964110 13699999999999999999999999999999999999999999999987

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.61  E-value=1.5e-15  Score=134.76  Aligned_cols=66  Identities=17%  Similarity=0.386  Sum_probs=60.9

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC-----CceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-----SGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt-----~G~i~i~g~~i~  281 (288)
                      .+.++++++.|++    +++++|+||++++||++||+|+|||||||++++|+|+++|+     +|+|+++|.++.
T Consensus         4 ~l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~   74 (253)
T PRK14267          4 AIETVNLRVYYGS----NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIY   74 (253)
T ss_pred             eEEEEeEEEEeCC----eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence            5789999999953    46999999999999999999999999999999999999974     999999999875

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.61  E-value=2.1e-15  Score=141.05  Aligned_cols=68  Identities=25%  Similarity=0.510  Sum_probs=63.0

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..+.++|++|.|+    ++.+++|+||++++||+++|+|+|||||||++++|+|+++|++|+|.++|.++.+
T Consensus        13 ~~L~l~~l~~~~~----~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~   80 (375)
T PRK09452         13 PLVELRGISKSFD----GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITH   80 (375)
T ss_pred             ceEEEEEEEEEEC----CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCC
Confidence            3689999999995    3569999999999999999999999999999999999999999999999998753

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.61  E-value=1.4e-15  Score=130.48  Aligned_cols=66  Identities=29%  Similarity=0.466  Sum_probs=60.1

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCC--CCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA--IKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~--~~pt~G~i~i~g~~i~~  282 (288)
                      +.++|++|.|++    +++++|+||++++||+++|+|+|||||||++++|+|+  .+|++|++.++|.++.+
T Consensus         1 l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~   68 (200)
T cd03217           1 LEIKDLHVSVGG----KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD   68 (200)
T ss_pred             CeEEEEEEEeCC----EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCc
Confidence            368899999953    4699999999999999999999999999999999999  58999999999998754

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.60  E-value=2.2e-15  Score=135.70  Aligned_cols=70  Identities=26%  Similarity=0.491  Sum_probs=63.1

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++++++.|++. +.+++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|+++|.++.+
T Consensus         4 ~l~~~~l~~~~~~~-~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~   73 (277)
T PRK13642          4 ILEVENLVFKYEKE-SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTA   73 (277)
T ss_pred             eEEEEEEEEEcCCC-CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCc
Confidence            58899999999631 23469999999999999999999999999999999999999999999999998753

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.60  E-value=1.7e-15  Score=132.97  Aligned_cols=66  Identities=23%  Similarity=0.461  Sum_probs=60.2

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.++++++.|++   ++.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus         1 l~~~~l~~~~~~---~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~   66 (236)
T cd03253           1 IEFENVTFAYDP---GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIR   66 (236)
T ss_pred             CEEEEEEEEeCC---CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhh
Confidence            357899999953   246999999999999999999999999999999999999999999999998875

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.60  E-value=2.5e-15  Score=135.72  Aligned_cols=69  Identities=32%  Similarity=0.553  Sum_probs=62.7

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC---ceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS---GNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~---G~i~i~g~~i~~  282 (288)
                      .+.++++++.|++  .++++++++||+|++||++||+|+|||||||++++|+|+.+|++   |+|+++|.++.+
T Consensus         5 ~l~i~~l~~~~~~--~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~   76 (282)
T PRK13640          5 IVEFKHVSFTYPD--SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTA   76 (282)
T ss_pred             eEEEEEEEEEcCC--CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCc
Confidence            6889999999963  23469999999999999999999999999999999999999998   899999998753

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.60  E-value=2.1e-15  Score=135.28  Aligned_cols=67  Identities=19%  Similarity=0.331  Sum_probs=61.5

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEcccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR  281 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~  281 (288)
                      ..+.++|+++.|++    +.+++|+||+|++||++||+|+|||||||++++|+|+.+     |++|++.++|.++.
T Consensus        12 ~~l~i~nl~~~~~~----~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~   83 (269)
T PRK14259         12 IIISLQNVTISYGT----FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLY   83 (269)
T ss_pred             ceEEEEeEEEEECC----EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence            36899999999953    569999999999999999999999999999999999987     69999999998874

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.60  E-value=2.1e-15  Score=140.53  Aligned_cols=67  Identities=22%  Similarity=0.487  Sum_probs=62.3

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC--ceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS--GNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~--G~i~i~g~~i~~  282 (288)
                      .+.+++++|.|++    +.+++|+||++++||+++|+|||||||||++++|+|+++|++  |+|.++|.++.+
T Consensus         5 ~l~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~   73 (362)
T TIGR03258         5 GIRIDHLRVAYGA----NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTH   73 (362)
T ss_pred             EEEEEEEEEEECC----eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCC
Confidence            5889999999953    569999999999999999999999999999999999999999  999999998753

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.60  E-value=9.1e-16  Score=136.25  Aligned_cols=66  Identities=26%  Similarity=0.504  Sum_probs=60.8

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc---cccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH---SIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~---~i~~  282 (288)
                      +.+++++|.|+    ...|++|+|++|+.||.++|+|||||||||++++|+|++.|++|.|.++|.   |.++
T Consensus         3 i~i~~~~~~~~----~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~   71 (345)
T COG1118           3 IRINNVKKRFG----AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN   71 (345)
T ss_pred             eeehhhhhhcc----cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc
Confidence            67888899885    478999999999999999999999999999999999999999999999999   6544

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.60  E-value=2.9e-15  Score=133.47  Aligned_cols=70  Identities=19%  Similarity=0.311  Sum_probs=63.7

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..+.++++++.|++  .++.+++|+||++++||++||+|+|||||||++++|+|+.+|++|+++++|.++.+
T Consensus        18 ~~i~~~~l~~~~~~--~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~   87 (257)
T cd03288          18 GEIKIHDLCVRYEN--NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISK   87 (257)
T ss_pred             ceEEEEEEEEEeCC--CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhh
Confidence            46899999999964  22569999999999999999999999999999999999999999999999988753

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.60  E-value=2.3e-15  Score=133.14  Aligned_cols=65  Identities=26%  Similarity=0.396  Sum_probs=59.9

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC--CCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~--~pt~G~i~i~g~~i~  281 (288)
                      +.++|+++.|++    +++++|+||.|++||+++|+|+|||||||++++|+|+.  +|++|++.++|.++.
T Consensus         2 i~~~nl~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~   68 (248)
T PRK09580          2 LSIKDLHVSVED----KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL   68 (248)
T ss_pred             eEEEEEEEEeCC----eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence            678999999953    56999999999999999999999999999999999995  699999999998874

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.60  E-value=2.3e-15  Score=125.52  Aligned_cols=63  Identities=21%  Similarity=0.325  Sum_probs=57.3

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~  278 (288)
                      +.++++++.|++   ++++++|+||++++||+.+|+|+|||||||++++|+|+.+|++|++.++|.
T Consensus         1 i~~~~~~~~~~~---~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~   63 (166)
T cd03223           1 IELENLSLATPD---GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG   63 (166)
T ss_pred             CEEEEEEEEcCC---CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC
Confidence            357899999953   256999999999999999999999999999999999999999999999873

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.60  E-value=2.4e-15  Score=131.08  Aligned_cols=65  Identities=35%  Similarity=0.541  Sum_probs=57.8

Q ss_pred             EEEEeeeEEecccc--c-cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219         213 LVVKRLFKIYANSK--D-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  277 (288)
Q Consensus       213 l~~~~l~k~y~~~~--~-~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g  277 (288)
                      +.++|++|.|+...  + ++++++|+||++++||++||+|+|||||||++++|+|+++|++|+|.++|
T Consensus         2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~   69 (224)
T TIGR02324         2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRH   69 (224)
T ss_pred             EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEec
Confidence            67899999996311  1 24699999999999999999999999999999999999999999999983

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.60  E-value=1.8e-15  Score=132.21  Aligned_cols=70  Identities=26%  Similarity=0.350  Sum_probs=62.6

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC---CCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK---PTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~---pt~G~i~i~g~~i~  281 (288)
                      .+..+++++.|++.+..+++++|+||++++||++||+|+|||||||++|+|+|+.+   |++|++.++|.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~   75 (226)
T cd03234           3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK   75 (226)
T ss_pred             cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC
Confidence            46789999999653224689999999999999999999999999999999999999   99999999998874

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.60  E-value=3e-15  Score=134.14  Aligned_cols=69  Identities=23%  Similarity=0.330  Sum_probs=62.6

Q ss_pred             CCCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEcccccc
Q psy7219         209 SGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR  281 (288)
Q Consensus       209 ~~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~  281 (288)
                      ....+.++|+++.|+    ++++++|+||++++||++||+|+|||||||++++|+|+.+     |++|+|.++|.++.
T Consensus        17 ~~~~l~~~nl~~~~~----~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~   90 (267)
T PRK14237         17 EEIALSTKDLHVYYG----KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN   90 (267)
T ss_pred             CCeEEEEeeEEEEEC----CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcc
Confidence            344799999999994    3579999999999999999999999999999999999986     58999999999875

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.60  E-value=2.9e-15  Score=132.88  Aligned_cols=68  Identities=26%  Similarity=0.468  Sum_probs=61.8

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCC--CCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA--IKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~--~~pt~G~i~i~g~~i~~  282 (288)
                      ..+.++++++.|++    +.+++|+||++++||++||+|+|||||||++++|+|+  .+|++|+++++|.++.+
T Consensus         6 ~~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~   75 (252)
T CHL00131          6 PILEIKNLHASVNE----NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILD   75 (252)
T ss_pred             ceEEEEeEEEEeCC----EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEccc
Confidence            36899999999953    4699999999999999999999999999999999998  68999999999988753

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.59  E-value=2.5e-15  Score=133.83  Aligned_cols=66  Identities=20%  Similarity=0.324  Sum_probs=60.5

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~  281 (288)
                      .+.++|++|.|++    +++++|+||++++||++||+|+|||||||++|+|+|+.+|     ++|+|.++|.++.
T Consensus         4 ~l~i~~v~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~   74 (258)
T PRK14241          4 RIDVKDLNIYYGS----FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLY   74 (258)
T ss_pred             cEEEeeEEEEECC----EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecc
Confidence            4789999999953    4699999999999999999999999999999999999974     7999999998874

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.59  E-value=2.3e-15  Score=141.71  Aligned_cols=53  Identities=32%  Similarity=0.592  Sum_probs=50.7

Q ss_pred             cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+++|+||++++||+++|+|+|||||||++|+|+|+++|++|+|+++|.++.+
T Consensus        42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~   94 (400)
T PRK10070         42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAK   94 (400)
T ss_pred             EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCc
Confidence            48999999999999999999999999999999999999999999999998753

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.59  E-value=2.8e-15  Score=131.97  Aligned_cols=65  Identities=23%  Similarity=0.466  Sum_probs=60.2

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.++++++.|++    +.+++|+||++++||+.||+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus         1 i~i~~l~~~~~~----~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~   65 (237)
T TIGR00968         1 IEIANISKRFGS----FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDAT   65 (237)
T ss_pred             CEEEEEEEEECC----eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcC
Confidence            367899999953    46999999999999999999999999999999999999999999999998875

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.59  E-value=3.7e-15  Score=139.59  Aligned_cols=68  Identities=32%  Similarity=0.591  Sum_probs=63.0

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..+.+++++|.|++    +.+++|+||++++||+++|+|||||||||++|+|+|+.+|++|+|+++|.++.+
T Consensus        18 ~~l~l~~v~~~~~~----~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~   85 (377)
T PRK11607         18 PLLEIRNLTKSFDG----QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSH   85 (377)
T ss_pred             ceEEEEeEEEEECC----EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCC
Confidence            46999999999953    569999999999999999999999999999999999999999999999998753

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.59  E-value=3e-15  Score=134.22  Aligned_cols=70  Identities=30%  Similarity=0.501  Sum_probs=62.4

Q ss_pred             eEEEEeeeEEeccc-----cccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANS-----KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~-----~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.++|++|.|+..     ..++++++|+||++++||+++|+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus         3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~   77 (268)
T PRK10419          3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLA   77 (268)
T ss_pred             eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc
Confidence            47899999999621     01357999999999999999999999999999999999999999999999999874

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.59  E-value=2.8e-15  Score=134.67  Aligned_cols=65  Identities=26%  Similarity=0.453  Sum_probs=60.4

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC--------CceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT--------SGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt--------~G~i~i~g~~i~  281 (288)
                      +.++|+++.|++    +++++|+||+|++||++||+|+|||||||++|+|+|+.+|+        +|+|.++|.++.
T Consensus         2 l~~~nl~~~~~~----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~   74 (272)
T PRK13547          2 LTADHLHVARRH----RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA   74 (272)
T ss_pred             eEEEEEEEEECC----EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcc
Confidence            678999999953    56999999999999999999999999999999999999998        999999998874

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.59  E-value=2.8e-15  Score=132.85  Aligned_cols=67  Identities=18%  Similarity=0.372  Sum_probs=60.8

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~~  282 (288)
                      .+.++++++.|++    +++++|+||++++||++||+|+|||||||++++|+|+.+|     ++|+|.++|.++.+
T Consensus         3 ~l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~   74 (250)
T PRK14247          3 KIEIRDLKVSFGQ----VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK   74 (250)
T ss_pred             eEEEEeeEEEECC----eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCc
Confidence            4789999999953    4699999999999999999999999999999999999984     79999999998753

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.59  E-value=2.5e-15  Score=131.75  Aligned_cols=66  Identities=32%  Similarity=0.572  Sum_probs=60.6

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++++++.|+.    +++++|+||++++||++||+|+|||||||++++|+|+.+|++|++.++|.++.+
T Consensus         1 l~~~~l~~~~~~----~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~   66 (232)
T cd03300           1 IELENVSKFYGG----FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITN   66 (232)
T ss_pred             CEEEeEEEEeCC----eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCc
Confidence            358899999953    569999999999999999999999999999999999999999999999988753

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.59  E-value=3.1e-15  Score=129.88  Aligned_cols=65  Identities=15%  Similarity=0.267  Sum_probs=59.5

Q ss_pred             EEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         214 VVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       214 ~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.++.+.|++   ++++++|+||++++||+++|+|+|||||||++++|+|+.+|++|+|+++|.++.
T Consensus         2 ~~~~~~~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~   66 (218)
T cd03290           2 QVTNGYFSWGS---GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNES   66 (218)
T ss_pred             eeeeeEEecCC---CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccc
Confidence            46788889864   356999999999999999999999999999999999999999999999998764

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.59  E-value=1.1e-15  Score=137.05  Aligned_cols=64  Identities=31%  Similarity=0.553  Sum_probs=58.4

Q ss_pred             EEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         214 VVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       214 ~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+++++|.|+    ++.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus        26 ~~~~~~~~~~----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~   89 (269)
T cd03294          26 SKEEILKKTG----QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIA   89 (269)
T ss_pred             hhhhhhhhcC----CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcc
Confidence            4567888885    357999999999999999999999999999999999999999999999998875

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.59  E-value=3.7e-15  Score=132.90  Aligned_cols=68  Identities=18%  Similarity=0.343  Sum_probs=61.7

Q ss_pred             CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEcccccc
Q psy7219         210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR  281 (288)
Q Consensus       210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~  281 (288)
                      ...+.++|+++.|++    +++++|+||++++||++||+|+|||||||++|+|+|+.+     |++|+|.++|.++.
T Consensus        11 ~~~l~~~~l~~~~~~----~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~   83 (260)
T PRK10744         11 PSKIQVRNLNFYYGK----FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL   83 (260)
T ss_pred             CceEEEEEEEEEeCC----eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcc
Confidence            346889999999953    469999999999999999999999999999999999986     58999999998874

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.59  E-value=3.8e-15  Score=132.35  Aligned_cols=67  Identities=22%  Similarity=0.339  Sum_probs=61.4

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEcccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR  281 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~  281 (288)
                      ..+.++++++.|++    +++++|+||++++||+++|+|+|||||||++|+|+|+.+|     ++|+|+++|.++.
T Consensus         6 ~~l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~   77 (254)
T PRK14273          6 AIIETENLNLFYTD----FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIY   77 (254)
T ss_pred             ceEEEeeeEEEeCC----ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecc
Confidence            36899999999953    4699999999999999999999999999999999999997     5899999998874

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.59  E-value=3.4e-15  Score=132.30  Aligned_cols=67  Identities=22%  Similarity=0.360  Sum_probs=60.4

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~~  282 (288)
                      .+.++|+++.|++    +++++|+||++++||++||+|+|||||||++++|+|+.+|     ++|+|.++|.++.+
T Consensus         3 ~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~   74 (250)
T PRK14240          3 KISVKDLDLFYGD----FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYK   74 (250)
T ss_pred             eEEEEEEEEEECC----ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence            4789999999953    4699999999999999999999999999999999999763     79999999998753

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.59  E-value=4.5e-15  Score=130.07  Aligned_cols=67  Identities=34%  Similarity=0.547  Sum_probs=62.4

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.+++++..|++  + .++++|+|++|++||+.+|+|+||+||||++++|+|+.+|++|.|.++|.++.
T Consensus         3 ~i~~~~l~~~y~~--~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~   69 (235)
T COG1122           3 MIEAENLSFRYPG--R-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTS   69 (235)
T ss_pred             eEEEEEEEEEcCC--C-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeecc
Confidence            4778999999975  2 68999999999999999999999999999999999999999999999999875

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.59  E-value=4.5e-15  Score=133.29  Aligned_cols=69  Identities=22%  Similarity=0.350  Sum_probs=62.4

Q ss_pred             CCCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEcccccc
Q psy7219         209 SGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR  281 (288)
Q Consensus       209 ~~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~  281 (288)
                      ....+.++|+++.|++    +++++|+||++++||++||+|+|||||||++++|+|+.+     |++|++.++|.++.
T Consensus        22 ~~~~l~~~nl~~~~~~----~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~   95 (272)
T PRK14236         22 EQTALEVRNLNLFYGD----KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY   95 (272)
T ss_pred             CCcEEEEEEEEEEECC----eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECc
Confidence            3446899999999953    469999999999999999999999999999999999988     48999999999875

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.58  E-value=4.1e-15  Score=132.11  Aligned_cols=63  Identities=22%  Similarity=0.444  Sum_probs=58.6

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~  278 (288)
                      .+.++++++.|++    +++++++||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.
T Consensus         4 ~l~~~~l~~~~~~----~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~   66 (251)
T PRK09544          4 LVSLENVSVSFGQ----RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK   66 (251)
T ss_pred             EEEEeceEEEECC----ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc
Confidence            5789999999953    46999999999999999999999999999999999999999999999873

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.58  E-value=4.2e-15  Score=132.15  Aligned_cols=65  Identities=22%  Similarity=0.397  Sum_probs=60.7

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC----CCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP----TSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p----t~G~i~i~g~~i~  281 (288)
                      .+.++|++|.| +    +++++|+||.+++||++||+|+|||||||++++|+|+.+|    ++|+|+++|.++.
T Consensus         4 ~l~~~~l~~~~-~----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~   72 (254)
T PRK10418          4 QIELRNIALQA-A----QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVA   72 (254)
T ss_pred             EEEEeCeEEEe-c----cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecc
Confidence            58899999999 2    3699999999999999999999999999999999999999    9999999998874

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.58  E-value=2.2e-15  Score=128.08  Aligned_cols=54  Identities=33%  Similarity=0.618  Sum_probs=51.3

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ++.+++++||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus         4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~   57 (190)
T TIGR01166         4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLD   57 (190)
T ss_pred             ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEcc
Confidence            356999999999999999999999999999999999999999999999998874

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.58  E-value=4e-15  Score=132.59  Aligned_cols=67  Identities=22%  Similarity=0.341  Sum_probs=61.3

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEcccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR  281 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~  281 (288)
                      ..+.++++++.|+    ++++++|+||++++||++||+|+|||||||++++|+|+.+|     ++|+|.++|.++.
T Consensus        11 ~~l~~~~l~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~   82 (258)
T PRK14268         11 PQIKVENLNLWYG----EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY   82 (258)
T ss_pred             eeEEEeeeEEEeC----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcc
Confidence            3688999999995    25699999999999999999999999999999999999985     8999999998875

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.58  E-value=5.3e-15  Score=133.77  Aligned_cols=67  Identities=16%  Similarity=0.364  Sum_probs=61.5

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEcccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR  281 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~  281 (288)
                      ..+.++++++.|++    +.+++|+||.|++||++||+|+|||||||++++|+|+.+     |++|+|.++|.++.
T Consensus        38 ~~l~i~~l~~~~~~----~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~  109 (285)
T PRK14254         38 TVIEARDLNVFYGD----EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY  109 (285)
T ss_pred             ceEEEEEEEEEECC----EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence            35889999999953    469999999999999999999999999999999999987     69999999998874

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.58  E-value=4.3e-15  Score=132.43  Aligned_cols=67  Identities=24%  Similarity=0.398  Sum_probs=61.1

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC--C---CCceEEEcccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK--P---TSGNAYVMNHSIR  281 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~--p---t~G~i~i~g~~i~  281 (288)
                      ..+.++|+++.|+.    +++++|+||+|++||++||+|+|||||||++++|+|+.+  |   ++|++.++|.++.
T Consensus        11 ~~l~i~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~   82 (259)
T PRK14274         11 EVYQINGMNLWYGQ----HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNIL   82 (259)
T ss_pred             ceEEEeeEEEEECC----eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcc
Confidence            46899999999953    469999999999999999999999999999999999987  3   6999999999875

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.58  E-value=3.9e-15  Score=128.54  Aligned_cols=64  Identities=20%  Similarity=0.461  Sum_probs=57.1

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++|+++.|++    +.  .|+||++++||++||+|+|||||||++++|+|+.+|++|+++++|.++..
T Consensus         1 i~~~~l~~~~~~----~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~   64 (211)
T cd03298           1 VRLDKIRFSYGE----QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTA   64 (211)
T ss_pred             CEEEeEEEEeCC----Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCc
Confidence            368899999953    22  39999999999999999999999999999999999999999999988753

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.58  E-value=4.1e-15  Score=131.87  Aligned_cols=66  Identities=27%  Similarity=0.437  Sum_probs=60.5

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC-----CceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-----SGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt-----~G~i~i~g~~i~  281 (288)
                      .+.++|++|.|++    +++++|+||+|++||++||+|+|||||||++|+|+|+.+|+     +|+|.++|.++.
T Consensus         4 ~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~   74 (252)
T PRK14272          4 LLSAQDVNIYYGD----KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY   74 (252)
T ss_pred             EEEEeeeEEEECC----EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcc
Confidence            4789999999952    56999999999999999999999999999999999999875     899999998875

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.58  E-value=5.1e-15  Score=132.92  Aligned_cols=68  Identities=24%  Similarity=0.373  Sum_probs=62.1

Q ss_pred             CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEcccccc
Q psy7219         210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR  281 (288)
Q Consensus       210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~  281 (288)
                      ...+.++++++.|++    +++++|+||++++||++||+|+|||||||++++|+|+.+     |++|+|.++|.++.
T Consensus        22 ~~~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~   94 (271)
T PRK14238         22 KVVFDTQNLNLWYGE----DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIF   94 (271)
T ss_pred             ceEEEEeeeEEEECC----cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcc
Confidence            346999999999953    469999999999999999999999999999999999987     69999999998874

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.58  E-value=4.7e-15  Score=131.42  Aligned_cols=67  Identities=21%  Similarity=0.424  Sum_probs=60.9

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~~  282 (288)
                      .+.++|+++.|+    ++++++|+||++++||+++|+|+|||||||++++|+|+.+|     ++|++.++|.++..
T Consensus         3 ~l~~~~l~~~~~----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~   74 (250)
T PRK14262          3 IIEIENFSAYYG----EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD   74 (250)
T ss_pred             eEEEEeeEEEeC----CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence            478999999995    25699999999999999999999999999999999999884     89999999988753

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.58  E-value=4.3e-15  Score=128.58  Aligned_cols=64  Identities=28%  Similarity=0.500  Sum_probs=58.0

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++|+++.|+.      ..+|+||.+++||+.||+|+|||||||++|+|+|+.+|++|+|+++|.++.+
T Consensus         1 ~~~~~l~~~~~~------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~   64 (213)
T TIGR01277         1 LALDKVRYEYEH------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTG   64 (213)
T ss_pred             CeEEeeeEEeCC------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccc
Confidence            357899999942      4579999999999999999999999999999999999999999999998753

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.58  E-value=4.3e-15  Score=131.42  Aligned_cols=66  Identities=18%  Similarity=0.327  Sum_probs=60.3

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC---CCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK---PTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~---pt~G~i~i~g~~i~~  282 (288)
                      +.++|+++.|++    +++++|+||++++||++||+|+|||||||++|+|+|+.+   |++|+|.++|.++.+
T Consensus         3 ~~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~   71 (246)
T PRK14269          3 AKTTNLNLFYGK----KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKN   71 (246)
T ss_pred             eeeeeeEEEECC----EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEeccc
Confidence            678999999953    569999999999999999999999999999999999974   799999999998753

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.58  E-value=4.5e-15  Score=132.76  Aligned_cols=67  Identities=30%  Similarity=0.472  Sum_probs=58.9

Q ss_pred             eEEEEeeeEEeccc----------------cccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219         212 VLVVKRLFKIYANS----------------KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV  275 (288)
Q Consensus       212 ~l~~~~l~k~y~~~----------------~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i  275 (288)
                      .+.++|+.|+|...                ..++++++++||++++||++||+|+|||||||++++|+|+.+|++|+|.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~   83 (264)
T PRK13546          4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR   83 (264)
T ss_pred             eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence            46788888888642                13356999999999999999999999999999999999999999999999


Q ss_pred             ccc
Q psy7219         276 MNH  278 (288)
Q Consensus       276 ~g~  278 (288)
                      +|.
T Consensus        84 ~g~   86 (264)
T PRK13546         84 NGE   86 (264)
T ss_pred             CCE
Confidence            985

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.58  E-value=5.1e-15  Score=131.36  Aligned_cols=67  Identities=18%  Similarity=0.372  Sum_probs=60.8

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC--C---CCceEEEcccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK--P---TSGNAYVMNHSIR  281 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~--p---t~G~i~i~g~~i~  281 (288)
                      ..+.++|+++.|++    +++++|+||.|++||++||+|+|||||||++++|+|+.+  |   ++|+|.++|.++.
T Consensus         3 ~~l~~~nl~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~   74 (252)
T PRK14256          3 NKVKLEQLNVHFGK----NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIY   74 (252)
T ss_pred             cEEEEEEEEEEeCC----eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcc
Confidence            35889999999952    469999999999999999999999999999999999986  4   6899999999875

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.57  E-value=4.1e-15  Score=144.50  Aligned_cols=66  Identities=29%  Similarity=0.472  Sum_probs=61.7

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.++|++|.|++    +++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus         4 ~i~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~   69 (501)
T PRK10762          4 LLQLKGIDKAFPG----VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVT   69 (501)
T ss_pred             eEEEeeeEEEeCC----eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence            5889999999953    56999999999999999999999999999999999999999999999998874

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.57  E-value=5.3e-15  Score=131.20  Aligned_cols=66  Identities=24%  Similarity=0.336  Sum_probs=60.7

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~  281 (288)
                      .+.++|+++.|+.    +.+++|+||++++||++||+|+|||||||++++|+|+.+|     ++|+|.++|.++.
T Consensus         4 ~l~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~   74 (251)
T PRK14270          4 KMESKNLNLWYGE----KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY   74 (251)
T ss_pred             EEEEEEeEEEECC----eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecc
Confidence            5789999999952    5699999999999999999999999999999999999875     7999999999875

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.57  E-value=5.8e-15  Score=130.86  Aligned_cols=66  Identities=24%  Similarity=0.353  Sum_probs=60.7

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~  281 (288)
                      .+.++++++.|+.    +++++|+||++++||++||+|+|||||||++|+|+|+.+     |++|+|.++|.++.
T Consensus         4 ~l~~~~l~~~~~~----~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~   74 (251)
T PRK14251          4 IISAKDVHLSYGN----YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIY   74 (251)
T ss_pred             eEEEEeeEEEECC----eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcc
Confidence            5789999999953    569999999999999999999999999999999999997     48999999999874

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.57  E-value=6.2e-15  Score=131.59  Aligned_cols=66  Identities=24%  Similarity=0.528  Sum_probs=60.8

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC---CceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt---~G~i~i~g~~i~  281 (288)
                      .+.++|+++.|+    ++.+++|+||.+++||+++|+|+|||||||++++|+|+.+|+   +|+|+++|.++.
T Consensus         4 ~l~~~nl~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~   72 (262)
T PRK09984          4 IIRVEKLAKTFN----QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQ   72 (262)
T ss_pred             EEEEeeEEEEeC----CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecc
Confidence            688999999995    356999999999999999999999999999999999999986   499999998874

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.57  E-value=5.6e-15  Score=129.85  Aligned_cols=65  Identities=32%  Similarity=0.558  Sum_probs=59.3

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++++++.|++    + +++|+||++++||++||+|+|||||||++++|+|+.+|++|+++++|.++.+
T Consensus         1 l~~~~l~~~~~~----~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~   65 (235)
T cd03299           1 LKVENLSKDWKE----F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITN   65 (235)
T ss_pred             CeeEeEEEEeCC----c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCc
Confidence            357899999952    2 8999999999999999999999999999999999999999999999988753

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.57  E-value=1.8e-15  Score=125.36  Aligned_cols=70  Identities=37%  Similarity=0.649  Sum_probs=61.8

Q ss_pred             eEEEEeeeEEeccc-----cccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANS-----KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~-----~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .++++|++|.|...     +....||+.+||++++||..|++|.||+||||+.|||+|..+||+|++.+||+++.
T Consensus         4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~   78 (267)
T COG4167           4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLH   78 (267)
T ss_pred             hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCcccc
Confidence            46788888888532     23457999999999999999999999999999999999999999999999998864

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.57  E-value=7.9e-15  Score=132.03  Aligned_cols=66  Identities=27%  Similarity=0.352  Sum_probs=61.2

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~  281 (288)
                      .+.++|+++.|+    ++++++|+||++++||++||+|+|||||||++++|+|+.+|     ++|+|.++|.++.
T Consensus        21 ~l~i~nl~~~~~----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~   91 (276)
T PRK14271         21 AMAAVNLTLGFA----GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIF   91 (276)
T ss_pred             EEEEeeEEEEEC----CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcc
Confidence            689999999995    35799999999999999999999999999999999999986     6999999998875

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.57  E-value=5.4e-15  Score=143.97  Aligned_cols=67  Identities=31%  Similarity=0.458  Sum_probs=62.2

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|++|.|++    +.+++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|+++|.++..
T Consensus         5 ~l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~   71 (510)
T PRK09700          5 YISMAGIGKSFGP----VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNK   71 (510)
T ss_pred             eEEEeeeEEEcCC----eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCC
Confidence            5889999999953    569999999999999999999999999999999999999999999999988753

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.56  E-value=3.7e-15  Score=148.78  Aligned_cols=70  Identities=26%  Similarity=0.476  Sum_probs=64.6

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..+.++|++..|+.  .+.++++|+|++|++||.+||+|+|||||||++|+|+|+++|++|+|.+||+|+.+
T Consensus       470 g~I~~~nvsf~y~~--~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~  539 (709)
T COG2274         470 GEIEFENVSFRYGP--DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLND  539 (709)
T ss_pred             ceEEEEEEEEEeCC--CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHh
Confidence            36999999999975  33479999999999999999999999999999999999999999999999999753

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.56  E-value=3.4e-15  Score=125.68  Aligned_cols=61  Identities=30%  Similarity=0.364  Sum_probs=54.5

Q ss_pred             EeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         216 KRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       216 ~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .|++|.|+    ++.++++. +.+++||+++|+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus         4 ~~l~~~~~----~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~   64 (177)
T cd03222           4 PDCVKRYG----VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPV   64 (177)
T ss_pred             CCeEEEEC----CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEE
Confidence            57889995    35688884 999999999999999999999999999999999999999997653

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.56  E-value=7.1e-15  Score=143.14  Aligned_cols=67  Identities=31%  Similarity=0.530  Sum_probs=62.3

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|++|.|++    +.+++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++..
T Consensus        11 ~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~   77 (510)
T PRK15439         11 LLCARSISKQYSG----VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCAR   77 (510)
T ss_pred             eEEEEeEEEEeCC----ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCC
Confidence            6899999999953    569999999999999999999999999999999999999999999999988753

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.56  E-value=5.7e-15  Score=130.78  Aligned_cols=66  Identities=20%  Similarity=0.311  Sum_probs=60.4

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~  281 (288)
                      .+.++|+++.|+    ++.+++|+||++++||+.||+|+|||||||++++|+|+.+|     ++|++.++|.++.
T Consensus         3 ~l~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~   73 (249)
T PRK14253          3 KFNIENLDLFYG----ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIY   73 (249)
T ss_pred             eEEEeccEEEEC----CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcc
Confidence            478999999995    35699999999999999999999999999999999999986     5999999998874

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.56  E-value=9.2e-15  Score=129.80  Aligned_cols=67  Identities=25%  Similarity=0.432  Sum_probs=60.4

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC--C---CCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK--P---TSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~--p---t~G~i~i~g~~i~~  282 (288)
                      .+.++++++.|+    ++.+++|+||++++||++||+|+|||||||++|+|+|+.+  |   ++|+|.++|.++.+
T Consensus         6 ~i~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~   77 (253)
T PRK14261          6 ILSTKNLNLWYG----EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD   77 (253)
T ss_pred             eEEEeeeEEEEC----CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence            688999999995    3569999999999999999999999999999999999876  3   48999999998754

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.56  E-value=9.5e-15  Score=133.33  Aligned_cols=67  Identities=22%  Similarity=0.323  Sum_probs=61.5

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEcccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR  281 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~  281 (288)
                      ..+.++|+++.|++    +++++++||++++||++||+|+|||||||++++|+|+.+     |++|+|+++|.++.
T Consensus        44 ~~l~i~nl~~~~~~----~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~  115 (305)
T PRK14264         44 AKLSVEDLDVYYGD----DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY  115 (305)
T ss_pred             ceEEEEEEEEEeCC----eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence            36899999999953    569999999999999999999999999999999999986     69999999998875

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.56  E-value=9.5e-15  Score=130.47  Aligned_cols=67  Identities=21%  Similarity=0.266  Sum_probs=61.5

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEcccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR  281 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~  281 (288)
                      .++.++++++.|+    ++++++|+||++++||++||+|+|||||||++|+|+|+.+|     ++|+|.++|.++.
T Consensus         7 ~~~~~~~~~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~   78 (261)
T PRK14263          7 IVMDCKLDKIFYG----NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVY   78 (261)
T ss_pred             ceEEEEeEEEEeC----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecc
Confidence            4688999999984    35799999999999999999999999999999999999987     7999999999875

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.56  E-value=1e-14  Score=127.91  Aligned_cols=64  Identities=28%  Similarity=0.516  Sum_probs=57.8

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++++++.|++    +.  .|+||++++||++||+|+|||||||++++|+|+++|++|++.++|.++..
T Consensus         2 l~~~~l~~~~~~----~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~   65 (232)
T PRK10771          2 LKLTDITWLYHH----LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTT   65 (232)
T ss_pred             eEEEEEEEEECC----cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCc
Confidence            678999999953    22  38999999999999999999999999999999999999999999998753

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.56  E-value=8.3e-15  Score=140.28  Aligned_cols=70  Identities=33%  Similarity=0.592  Sum_probs=63.2

Q ss_pred             CCeEEEEeeeEEeccc-------cccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219         210 GDVLVVKRLFKIYANS-------KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS  279 (288)
Q Consensus       210 ~~~l~~~~l~k~y~~~-------~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~  279 (288)
                      ...+.++|++|.|..+       .+...||+|+||++++||++||+|++||||||+.|+|+|+.+|++|++.++|.+
T Consensus       278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~  354 (539)
T COG1123         278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD  354 (539)
T ss_pred             CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc
Confidence            3468899999999742       133579999999999999999999999999999999999999999999999987

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.56  E-value=7.5e-15  Score=131.30  Aligned_cols=66  Identities=18%  Similarity=0.306  Sum_probs=60.4

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~  281 (288)
                      .+.++++++.|++    +++++|+||++++||++||+|+|||||||++|+|+|+.+     |++|+|+++|.++.
T Consensus        10 ~l~i~~v~~~~~~----~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~   80 (264)
T PRK14243         10 VLRTENLNVYYGS----FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLY   80 (264)
T ss_pred             EEEEeeeEEEECC----EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcc
Confidence            6889999999953    469999999999999999999999999999999999976     48999999998874

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.56  E-value=6e-15  Score=131.45  Aligned_cols=64  Identities=27%  Similarity=0.455  Sum_probs=58.1

Q ss_pred             CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219         210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  277 (288)
Q Consensus       210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g  277 (288)
                      .+.+.+++++|.|+    ++.+++|+||.+.+||++||+|+|||||||++++|+|+.+|++|++.++|
T Consensus         8 ~~~i~~~~~~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G   71 (257)
T PRK14246          8 EDVFNISRLYLYIN----DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDG   71 (257)
T ss_pred             hhheeeeeEEEecC----CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcC
Confidence            34689999999995    35699999999999999999999999999999999999999998777766

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.56  E-value=1.1e-14  Score=129.03  Aligned_cols=66  Identities=29%  Similarity=0.435  Sum_probs=59.8

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC--CC---CCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KP---TSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~--~p---t~G~i~i~g~~i~  281 (288)
                      .+.++++++.|++    +.+++|+||++++||++||+|+|||||||++++|+|+.  +|   ++|+|+++|.++.
T Consensus         5 ~l~~~~l~~~~~~----~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~   75 (252)
T PRK14239          5 ILQVSDLSVYYNK----KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIY   75 (252)
T ss_pred             eEEEEeeEEEECC----eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECc
Confidence            5889999999953    46999999999999999999999999999999999985  46   5999999999874

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.55  E-value=8.7e-15  Score=136.97  Aligned_cols=51  Identities=25%  Similarity=0.435  Sum_probs=49.0

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~  278 (288)
                      ...+++|+||+|++||+++|+|+|||||||++|+|+|+.+|++|+|+++|.
T Consensus        36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~   86 (382)
T TIGR03415        36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDG   86 (382)
T ss_pred             CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCE
Confidence            457999999999999999999999999999999999999999999999996

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.55  E-value=1.3e-14  Score=129.84  Aligned_cols=67  Identities=19%  Similarity=0.270  Sum_probs=60.8

Q ss_pred             CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEccccc
Q psy7219         210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSI  280 (288)
Q Consensus       210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i  280 (288)
                      ...+.+++++|.|++    +++++|+||++++||+.||+|+|||||||++++|+|+.+|     ++|++.++|.++
T Consensus        14 ~~~l~~~~l~~~~~~----~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~   85 (265)
T PRK14252         14 QQKSEVNKLNFYYGG----YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNV   85 (265)
T ss_pred             CceEEEEEEEEEECC----eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccc
Confidence            346899999999953    4699999999999999999999999999999999999885     799999998765

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.55  E-value=1.3e-14  Score=128.70  Aligned_cols=66  Identities=17%  Similarity=0.308  Sum_probs=60.9

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC-----CceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-----SGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt-----~G~i~i~g~~i~  281 (288)
                      .+.++++++.|++    +.+++|+||++++||+.||+|+|||||||++++|+|+.+|+     +|+|+++|.++.
T Consensus         4 ~l~~~~l~~~~~~----~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~   74 (251)
T PRK14249          4 KIKIRGVNFFYHK----HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIY   74 (251)
T ss_pred             eEEEEEEEEEECC----eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcc
Confidence            5889999999953    56999999999999999999999999999999999999997     699999998875

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.55  E-value=1.1e-14  Score=129.93  Aligned_cols=66  Identities=26%  Similarity=0.357  Sum_probs=60.5

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~  281 (288)
                      .+.++|+++.|++    +++++|+||++++||++||+|+|||||||++|+|+|+.+|     ++|+|.++|.++.
T Consensus         7 ~l~~~~l~~~~~~----~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~   77 (259)
T PRK14260          7 AIKVKDLSFYYNT----SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIY   77 (259)
T ss_pred             eEEEEEEEEEECC----eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecc
Confidence            5889999999953    4699999999999999999999999999999999999985     5899999999874

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.55  E-value=1.2e-14  Score=141.20  Aligned_cols=66  Identities=32%  Similarity=0.574  Sum_probs=61.7

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.++|++|.|++    +.+++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|+++|.++.
T Consensus         4 ~l~~~~l~~~~~~----~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~   69 (501)
T PRK11288          4 YLSFDGIGKTFPG----VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMR   69 (501)
T ss_pred             eEEEeeeEEEECC----EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECC
Confidence            5889999999953    46999999999999999999999999999999999999999999999998874

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.55  E-value=1.5e-14  Score=130.10  Aligned_cols=67  Identities=16%  Similarity=0.276  Sum_probs=60.9

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEcccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR  281 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~  281 (288)
                      ..+.++|+++.|++    +.+++|+||.+++||+++|+|+|||||||++++|+|+.+|     ++|++.++|.++.
T Consensus        19 ~~l~~~nl~~~~~~----~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~   90 (274)
T PRK14265         19 SVFEVEGVKVFYGG----FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY   90 (274)
T ss_pred             ceEEEeeEEEEeCC----eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecc
Confidence            37899999999953    4699999999999999999999999999999999999863     6999999998874

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.55  E-value=9.6e-15  Score=142.10  Aligned_cols=66  Identities=30%  Similarity=0.479  Sum_probs=61.4

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC--CCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p--t~G~i~i~g~~i~  281 (288)
                      .+.++|++|.|+    ++++++|+||++++||++||+|+|||||||++|+|+|+.+|  ++|+|+++|.++.
T Consensus         5 ~l~~~nl~~~~~----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~   72 (506)
T PRK13549          5 LLEMKNITKTFG----GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ   72 (506)
T ss_pred             eEEEeeeEEEeC----CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence            588999999995    35699999999999999999999999999999999999996  8999999999875

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.55  E-value=1e-14  Score=131.96  Aligned_cols=67  Identities=19%  Similarity=0.260  Sum_probs=60.5

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEcccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR  281 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~  281 (288)
                      ..+.++++++.|++    +++++|+||+|++||++||+|+|||||||++++|+|+.+     |++|+|.++|.++.
T Consensus        38 ~~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~  109 (286)
T PRK14275         38 PHVVAKNFSIYYGE----FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY  109 (286)
T ss_pred             eEEEEeeeEEEECC----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence            46899999999953    469999999999999999999999999999999999864     49999999998874

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.55  E-value=1.2e-14  Score=130.72  Aligned_cols=67  Identities=28%  Similarity=0.477  Sum_probs=60.8

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++|+++.|+.  ++.++++|+||.|++||++||+|+|||||||++++|+|+.+ ++|+|+++|.++.+
T Consensus         3 i~~~nls~~~~~--~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~   69 (275)
T cd03289           3 MTVKDLTAKYTE--GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNS   69 (275)
T ss_pred             EEEEEEEEEeCC--CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhh
Confidence            789999999964  23569999999999999999999999999999999999998 79999999998753

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.55  E-value=1.4e-14  Score=128.43  Aligned_cols=67  Identities=19%  Similarity=0.336  Sum_probs=59.7

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCC---CCC--CCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA---IKP--TSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~---~~p--t~G~i~i~g~~i~~  282 (288)
                      .+.++++++.|+.    +.+++|+||++++||++||+|+|||||||++|+|+|+   .+|  ++|++.++|.++.+
T Consensus         3 ~l~~~~~~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~   74 (250)
T PRK14245          3 KIDARDVNFWYGD----FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYD   74 (250)
T ss_pred             EEEEEEEEEEECC----EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccc
Confidence            4789999999953    5699999999999999999999999999999999997   455  58999999998753

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.55  E-value=1.1e-14  Score=142.35  Aligned_cols=69  Identities=28%  Similarity=0.478  Sum_probs=63.7

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccch
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS  283 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~  283 (288)
                      .+.++|++..|++   ++++++|+||+++|||+++|+|+|||||||++|+|.|+++|++|+|.++|.|+++-
T Consensus       334 ~I~~~~vsf~Y~~---~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~  402 (529)
T TIGR02868       334 TLELRDLSFGYPG---SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL  402 (529)
T ss_pred             eEEEEEEEEecCC---CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH
Confidence            5999999999964   24699999999999999999999999999999999999999999999999988643

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.55  E-value=1.5e-14  Score=128.37  Aligned_cols=66  Identities=23%  Similarity=0.415  Sum_probs=59.9

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC--C---CCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK--P---TSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~--p---t~G~i~i~g~~i~  281 (288)
                      .+.++++++.|+.    +.+++|+||++.+||++||+|+|||||||++++|+|+.+  |   ++|+|+++|.++.
T Consensus         5 ~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~   75 (252)
T PRK14255          5 IITSSDVHLFYGK----FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIY   75 (252)
T ss_pred             eEEEEeEEEEECC----eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcc
Confidence            5789999999952    569999999999999999999999999999999999865  5   5999999999874

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.54  E-value=1.3e-14  Score=128.53  Aligned_cols=67  Identities=19%  Similarity=0.359  Sum_probs=60.1

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~~  282 (288)
                      .+.++++++.|+    ++++++|+||++++||++||+|+|||||||++++|+|+.+     |++|+|.++|.++.+
T Consensus         3 ~l~~~~v~~~~~----~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~   74 (250)
T PRK14266          3 RIEVENLNTYFD----DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD   74 (250)
T ss_pred             EEEEEeEEEEeC----CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccc
Confidence            477999999995    2569999999999999999999999999999999999864     489999999998753

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.54  E-value=1.1e-14  Score=141.24  Aligned_cols=66  Identities=20%  Similarity=0.306  Sum_probs=60.7

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.++|++|.|++    +.+++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus         3 ~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~   68 (490)
T PRK10938          3 SLQISQGTFRLSD----TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHIT   68 (490)
T ss_pred             eEEEEeEEEEcCC----eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccc
Confidence            4789999999953    45999999999999999999999999999999999999999999999987653

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.54  E-value=1.3e-14  Score=145.95  Aligned_cols=70  Identities=24%  Similarity=0.463  Sum_probs=64.6

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..++++|++..|++  +++++++|+||+|++||++||+|+|||||||++|+|+|+++|++|+|.+||.|+++
T Consensus       450 ~~I~~~nvsf~Y~~--~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~  519 (686)
T TIGR03797       450 GAIEVDRVTFRYRP--DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAG  519 (686)
T ss_pred             ceEEEEEEEEEcCC--CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCc
Confidence            35999999999964  24679999999999999999999999999999999999999999999999999864

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.54  E-value=1.6e-14  Score=143.74  Aligned_cols=71  Identities=27%  Similarity=0.413  Sum_probs=63.0

Q ss_pred             CeEEEEeeeEEecccc-------ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         211 DVLVVKRLFKIYANSK-------DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~-------~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ..+.++|++|.|+..+       +++.+++|+||+|++||++||+|+|||||||++|+|+|+.+|++|+|+++|.++.
T Consensus       312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~  389 (623)
T PRK10261        312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRID  389 (623)
T ss_pred             ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence            3689999999996311       1246999999999999999999999999999999999999999999999998875

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.54  E-value=1.7e-14  Score=143.66  Aligned_cols=70  Identities=27%  Similarity=0.424  Sum_probs=62.5

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  280 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i  280 (288)
                      ..+.++|+++.|+..+++.++++|+||++++||++||+|+|||||||++|+|+|+++|++|+|.++|.++
T Consensus        11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~   80 (623)
T PRK10261         11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLL   80 (623)
T ss_pred             ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEe
Confidence            4789999999996432235799999999999999999999999999999999999999999999998644

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.54  E-value=8.1e-15  Score=136.46  Aligned_cols=55  Identities=36%  Similarity=0.694  Sum_probs=52.3

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ++.+++|+||+|++||+++|+|+|||||||++++|+|+.+|++|+|+++|.++..
T Consensus         5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~   59 (363)
T TIGR01186         5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMK   59 (363)
T ss_pred             CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCc
Confidence            4679999999999999999999999999999999999999999999999998864

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.54  E-value=2.1e-14  Score=118.33  Aligned_cols=64  Identities=31%  Similarity=0.584  Sum_probs=58.7

Q ss_pred             EEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       215 ~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ++++++.|++    +.+++++++++++||+.+|+|+|||||||++++|+|.++|++|+++++|.++..
T Consensus         2 ~~~~~~~~~~----~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~   65 (157)
T cd00267           2 IENLSFRYGG----RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAK   65 (157)
T ss_pred             eEEEEEEeCC----eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEccc
Confidence            5788899853    469999999999999999999999999999999999999999999999987653

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.54  E-value=1.3e-14  Score=144.69  Aligned_cols=62  Identities=23%  Similarity=0.369  Sum_probs=58.3

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~  278 (288)
                      +.++|++|.|+    ++.+++|+||.|++||++||+|+|||||||++|+|+|+.+|++|+|.++|.
T Consensus         2 i~i~nls~~~g----~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~   63 (638)
T PRK10636          2 IVFSSLQIRRG----VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN   63 (638)
T ss_pred             EEEEEEEEEeC----CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC
Confidence            67999999995    357999999999999999999999999999999999999999999999875

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.53  E-value=1.4e-14  Score=128.40  Aligned_cols=65  Identities=20%  Similarity=0.294  Sum_probs=58.7

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~  281 (288)
                      -.++++++.|+    ++++++|+||++.+||++||+|+|||||||++++|+|+.+     |++|+|.++|.++.
T Consensus         6 ~~~~~l~~~~~----~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~   75 (251)
T PRK14244          6 ASVKNLNLWYG----SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVY   75 (251)
T ss_pred             EEeeeEEEEEC----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehH
Confidence            45889999995    3579999999999999999999999999999999999986     47999999998874

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.53  E-value=2e-14  Score=140.51  Aligned_cols=70  Identities=23%  Similarity=0.412  Sum_probs=62.4

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~  281 (288)
                      .+.++++++.|++.++.+++++|+||++++||++||+|+|||||||++|+|+|+++|     ++|+|.++|.++.
T Consensus         5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~   79 (529)
T PRK15134          5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLL   79 (529)
T ss_pred             eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecc
Confidence            588999999996321235799999999999999999999999999999999999997     7999999999874

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.53  E-value=2.3e-14  Score=127.87  Aligned_cols=66  Identities=21%  Similarity=0.336  Sum_probs=60.8

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC-----CceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-----SGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt-----~G~i~i~g~~i~  281 (288)
                      .+.++|+++.|++    +.+++|+||.+++||++||+|+|||||||++++|+|+.+|+     +|++.++|.++.
T Consensus         7 ~l~~~nl~~~~~~----~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~   77 (261)
T PRK14258          7 AIKVNNLSFYYDT----QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIY   77 (261)
T ss_pred             eEEEeeEEEEeCC----eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhh
Confidence            5889999999953    46999999999999999999999999999999999999996     899999998874

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.53  E-value=7.9e-15  Score=124.42  Aligned_cols=72  Identities=26%  Similarity=0.450  Sum_probs=62.1

Q ss_pred             EEEeeeEEecc-ccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchhh
Q psy7219         214 VVKRLFKIYAN-SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD  285 (288)
Q Consensus       214 ~~~~l~k~y~~-~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~~  285 (288)
                      .+.+..|.+.+ ...+++|++++|++|++||.+-++|.|||||||+++.++|..+||+|+|.|+|.++.+...
T Consensus         3 ~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~   75 (263)
T COG1101           3 SLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSV   75 (263)
T ss_pred             ccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCH
Confidence            45566666643 2345789999999999999999999999999999999999999999999999999976543

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.52  E-value=1.7e-14  Score=145.71  Aligned_cols=70  Identities=21%  Similarity=0.349  Sum_probs=64.6

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..++++|++..|++  .++++++|+||+|++||.+||+|+|||||||++|+|+|+++|++|+|.++|.|+++
T Consensus       476 ~~I~~~~vsf~y~~--~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~  545 (710)
T TIGR03796       476 GYVELRNITFGYSP--LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREE  545 (710)
T ss_pred             CeEEEEEEEEecCC--CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHH
Confidence            36999999999974  24679999999999999999999999999999999999999999999999999864

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.52  E-value=2.1e-14  Score=139.46  Aligned_cols=66  Identities=35%  Similarity=0.589  Sum_probs=60.6

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC--CCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p--t~G~i~i~g~~i~~  282 (288)
                      +.++|++|.|+    ++++++|+||++++||++||+|+|||||||++|+|+|+.+|  ++|+|+++|.++.+
T Consensus         2 l~i~~l~~~~~----~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~   69 (500)
T TIGR02633         2 LEMKGIVKTFG----GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKA   69 (500)
T ss_pred             EEEEeEEEEeC----CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCC
Confidence            67899999995    25699999999999999999999999999999999999997  79999999988753

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.52  E-value=1.4e-14  Score=140.52  Aligned_cols=62  Identities=27%  Similarity=0.411  Sum_probs=57.7

Q ss_pred             EeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         216 KRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       216 ~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +|++|.|+    ++++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus         2 ~nl~~~~~----~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   63 (491)
T PRK10982          2 SNISKSFP----GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEID   63 (491)
T ss_pred             CceEEEeC----CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECC
Confidence            67899995    356999999999999999999999999999999999999999999999998874

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.52  E-value=2.2e-14  Score=140.16  Aligned_cols=69  Identities=35%  Similarity=0.530  Sum_probs=63.9

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|+++.|++  +++++++|+||+++|||+++|+|+|||||||++|+|+|+++|++|+|.++|.++++
T Consensus       320 ~i~~~~v~f~y~~--~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~  388 (529)
T TIGR02857       320 SLEFSGLSVAYPG--RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLAD  388 (529)
T ss_pred             eEEEEEEEEECCC--CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhh
Confidence            6999999999964  23579999999999999999999999999999999999999999999999998864

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.52  E-value=1.1e-14  Score=121.81  Aligned_cols=68  Identities=31%  Similarity=0.474  Sum_probs=63.2

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc-ccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN-HSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g-~~i~~  282 (288)
                      ..+.+++++.+|+    ++.|++++||.|.+||.=.|+|||||||||++..|||..+|+.|+++++| .++++
T Consensus         4 ~iL~~~~vsVsF~----GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~   72 (249)
T COG4674           4 IILYLDGVSVSFG----GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTK   72 (249)
T ss_pred             ceEEEeceEEEEc----ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhcc
Confidence            4688999999995    58899999999999999999999999999999999999999999999999 67754

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.52  E-value=2.5e-14  Score=141.33  Aligned_cols=69  Identities=26%  Similarity=0.459  Sum_probs=64.0

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|++..|++  +++++++|+|+++++||+++|+|+||+||||++|+|+|+++|++|+|.++|.++++
T Consensus       341 ~i~~~~vsf~y~~--~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~  409 (582)
T PRK11176        341 DIEFRNVTFTYPG--KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRD  409 (582)
T ss_pred             eEEEEEEEEecCC--CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhh
Confidence            5999999999964  24679999999999999999999999999999999999999999999999998864

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.51  E-value=1.4e-14  Score=116.30  Aligned_cols=51  Identities=33%  Similarity=0.638  Sum_probs=49.4

Q ss_pred             eeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       232 v~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ++|+|+.+++||+++|+|+||+||||++++|+|..+|++|+|.++|.++.+
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~   51 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISD   51 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTT
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccc
Confidence            689999999999999999999999999999999999999999999999876

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.51  E-value=4.6e-14  Score=130.05  Aligned_cols=71  Identities=21%  Similarity=0.431  Sum_probs=63.8

Q ss_pred             CCCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEcccccc
Q psy7219         209 SGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR  281 (288)
Q Consensus       209 ~~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~  281 (288)
                      ....+.++|+++.|.+  +.+++++|+||+|++||++||+|+|||||||++++|.|+.+     |++|+|.++|.++.
T Consensus        77 ~~~~i~~~nls~~y~~--~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~  152 (329)
T PRK14257         77 HANVFEIRNFNFWYMN--RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR  152 (329)
T ss_pred             cCceEEEEeeEEEecC--CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence            3457999999999964  23569999999999999999999999999999999999986     57999999999985

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.51  E-value=3.4e-14  Score=140.24  Aligned_cols=70  Identities=29%  Similarity=0.502  Sum_probs=64.2

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..+.++|+++.|++  +++++++|+||++++||+++|+|+|||||||++|+|+|+++|++|+|.++|.++++
T Consensus       337 ~~i~~~~v~f~y~~--~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~  406 (574)
T PRK11160        337 VSLTLNNVSFTYPD--QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIAD  406 (574)
T ss_pred             CeEEEEEEEEECCC--CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhh
Confidence            35999999999964  23579999999999999999999999999999999999999999999999998764

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.51  E-value=3.7e-14  Score=139.23  Aligned_cols=68  Identities=29%  Similarity=0.465  Sum_probs=63.3

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .++++|+++.|++   ++++++|+||++++||+++|+|+|||||||++|+|+|+++|++|+|.++|.++++
T Consensus       322 ~i~~~~v~f~y~~---~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~  389 (547)
T PRK10522        322 TLELRNVTFAYQD---NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTA  389 (547)
T ss_pred             eEEEEEEEEEeCC---CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCC
Confidence            5899999999963   3469999999999999999999999999999999999999999999999999864

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.51  E-value=4.5e-14  Score=142.33  Aligned_cols=69  Identities=28%  Similarity=0.513  Sum_probs=63.9

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .++++|++..|++  .++++++|+||+|++||+++|+|+|||||||++|+|+|+++|++|+|.++|.|+++
T Consensus       463 ~I~~~~vsf~Y~~--~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~  531 (694)
T TIGR03375       463 EIEFRNVSFAYPG--QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQ  531 (694)
T ss_pred             eEEEEEEEEEeCC--CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhh
Confidence            5999999999964  24579999999999999999999999999999999999999999999999998764

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>KOG0058|consensus

Probab=99.50  E-value=2.7e-14  Score=139.17  Aligned_cols=71  Identities=28%  Similarity=0.467  Sum_probs=66.3

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..++.+|++..|+. +++.++++|+||+|+|||.++|+||||+||||..++|-.+|+|++|+|.+||+||++
T Consensus       464 G~IeF~~VsFaYP~-Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~  534 (716)
T KOG0058|consen  464 GVIEFEDVSFAYPT-RPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISD  534 (716)
T ss_pred             ceEEEEEeeeecCC-CCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhh
Confidence            46999999999986 346789999999999999999999999999999999999999999999999999864

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.50  E-value=3.1e-14  Score=138.68  Aligned_cols=64  Identities=33%  Similarity=0.477  Sum_probs=59.3

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.++|+++.|.      .+++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|+++|.++.
T Consensus       265 ~l~~~~l~~~~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~  328 (510)
T PRK09700        265 VFEVRNVTSRDR------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDIS  328 (510)
T ss_pred             EEEEeCccccCC------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECC
Confidence            688999998752      3899999999999999999999999999999999999999999999998774

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.50  E-value=4.3e-14  Score=136.95  Aligned_cols=66  Identities=26%  Similarity=0.470  Sum_probs=60.2

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-CCceEEEccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAYVMNHSI  280 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-t~G~i~i~g~~i  280 (288)
                      ..+.++|++|.|++    +.+++|+||.+++||++||+|+|||||||++|+|+|+.+| ++|+|+++|.++
T Consensus       259 ~~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~  325 (490)
T PRK10938        259 PRIVLNNGVVSYND----RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRR  325 (490)
T ss_pred             ceEEEeceEEEECC----eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccC
Confidence            36899999999953    4699999999999999999999999999999999998876 799999999875

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.50  E-value=4e-14  Score=142.94  Aligned_cols=71  Identities=23%  Similarity=0.428  Sum_probs=64.5

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..++++|++..|++. +++++++|+||+++|||.++|+|+||+||||++|+|+|+++|++|+|.++|.|+++
T Consensus       477 ~~I~~~nVsf~Y~~~-~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~  547 (711)
T TIGR00958       477 GLIEFQDVSFSYPNR-PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQ  547 (711)
T ss_pred             CeEEEEEEEEECCCC-CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHh
Confidence            359999999999742 23579999999999999999999999999999999999999999999999998754

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.50  E-value=4.1e-14  Score=138.42  Aligned_cols=62  Identities=34%  Similarity=0.639  Sum_probs=57.8

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~  278 (288)
                      +.++|++|.|+    ++++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.
T Consensus         2 l~i~~ls~~~~----~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~   63 (530)
T PRK15064          2 LSTANITMQFG----AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN   63 (530)
T ss_pred             EEEEEEEEEeC----CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC
Confidence            67899999995    357999999999999999999999999999999999999999999999863

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.50  E-value=1.6e-14  Score=128.60  Aligned_cols=62  Identities=26%  Similarity=0.501  Sum_probs=54.5

Q ss_pred             EeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEE-----------Ecccccc
Q psy7219         216 KRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY-----------VMNHSIR  281 (288)
Q Consensus       216 ~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~-----------i~g~~i~  281 (288)
                      .+++|.|++   .+.+++|+|+ +++||++||+|+|||||||++|+|+|+++|++|+|.           ++|.++.
T Consensus         4 ~~~~~~y~~---~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~   76 (255)
T cd03236           4 DEPVHRYGP---NSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQ   76 (255)
T ss_pred             cCcceeecC---cchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhh
Confidence            467888953   2369999995 999999999999999999999999999999999996           7787764

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.50  E-value=3.5e-14  Score=122.93  Aligned_cols=59  Identities=25%  Similarity=0.434  Sum_probs=53.8

Q ss_pred             EeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         216 KRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       216 ~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      -+|+|.|++    +.+  |+||++++ |++||+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus         4 ~~l~~~~~~----~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   62 (214)
T cd03297           4 VDIEKRLPD----FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLF   62 (214)
T ss_pred             eeeeEecCC----eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecc
Confidence            489999964    333  99999999 999999999999999999999999999999999998874

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=3.1e-14  Score=118.47  Aligned_cols=61  Identities=30%  Similarity=0.595  Sum_probs=57.2

Q ss_pred             ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchhhhc
Q psy7219         227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLV  287 (288)
Q Consensus       227 ~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~~~v  287 (288)
                      ++...+.++||++.+||.+-+.||||+||||++|+|+|+.+|++|+|+++|.++++++++.
T Consensus        13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~   73 (209)
T COG4133          13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESY   73 (209)
T ss_pred             CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhH
Confidence            4567999999999999999999999999999999999999999999999999999888754

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.50  E-value=5.4e-14  Score=137.29  Aligned_cols=68  Identities=37%  Similarity=0.640  Sum_probs=59.9

Q ss_pred             CeEEEEeeeEEecc-ccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEc-cc
Q psy7219         211 DVLVVKRLFKIYAN-SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM-NH  278 (288)
Q Consensus       211 ~~l~~~~l~k~y~~-~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~-g~  278 (288)
                      ..+.++|+++.|++ +++++++++|+||.|++||++||+|+|||||||++|+|+|+.+|++|+|+++ |.
T Consensus       278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~  347 (520)
T TIGR03269       278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGD  347 (520)
T ss_pred             ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCC
Confidence            36899999999953 1123569999999999999999999999999999999999999999999996 53

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.50  E-value=4.6e-14  Score=138.46  Aligned_cols=70  Identities=27%  Similarity=0.507  Sum_probs=64.1

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..+.++|+++.|++  +++++++|+||++++||++||+|+|||||||++++|+|+++|++|++.++|.++.+
T Consensus       315 ~~i~~~~v~~~y~~--~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~  384 (544)
T TIGR01842       315 GHLSVENVTIVPPG--GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQ  384 (544)
T ss_pred             CeEEEEEEEEEcCC--CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhh
Confidence            35999999999964  23579999999999999999999999999999999999999999999999998754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.49  E-value=5.8e-14  Score=138.08  Aligned_cols=72  Identities=21%  Similarity=0.344  Sum_probs=64.4

Q ss_pred             CeEEEEeeeEEeccccc-cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~-~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..++++|+++.|+++++ ++++++|+||++++||+++|+|+|||||||++++|+|+++|++|+|.++|.++++
T Consensus       336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~  408 (555)
T TIGR01194       336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSA  408 (555)
T ss_pred             ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC
Confidence            35899999999975211 2469999999999999999999999999999999999999999999999999864

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.49  E-value=2.8e-14  Score=117.15  Aligned_cols=72  Identities=24%  Similarity=0.474  Sum_probs=65.8

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .++.+++++|+-+.......+++++++.|++||.+||+|++|+||||++-+++|+..|++|+|++.|+++.+
T Consensus         5 ~ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~   76 (228)
T COG4181           5 NIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHK   76 (228)
T ss_pred             ceeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhh
Confidence            378899999988765556689999999999999999999999999999999999999999999999999764

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.49  E-value=3.6e-14  Score=138.10  Aligned_cols=69  Identities=29%  Similarity=0.484  Sum_probs=61.6

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-CCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-PTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-pt~G~i~i~g~~i~  281 (288)
                      .+.++|++|.|+.. +++++++|+||+|++||++||+|+|||||||++|+|+|+.+ |++|+|+++|.++.
T Consensus       259 ~l~~~~l~~~~~~~-~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~  328 (506)
T PRK13549        259 ILEVRNLTAWDPVN-PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVK  328 (506)
T ss_pred             eEEEecCccccccc-cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECC
Confidence            68999999999421 13569999999999999999999999999999999999999 59999999998874

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.49  E-value=4.4e-14  Score=142.72  Aligned_cols=68  Identities=24%  Similarity=0.406  Sum_probs=63.4

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|+++.|+.   ++++++|+||+|++||.+||+|+|||||||++|+|+|+++|++|+|+++|.|+++
T Consensus       473 ~I~~~~vsf~y~~---~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~  540 (708)
T TIGR01193       473 DIVINDVSYSYGY---GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKD  540 (708)
T ss_pred             cEEEEEEEEEcCC---CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHH
Confidence            5899999999963   3579999999999999999999999999999999999999999999999998854

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.49  E-value=9.5e-14  Score=125.33  Aligned_cols=61  Identities=23%  Similarity=0.514  Sum_probs=56.4

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  277 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g  277 (288)
                      ..+.++++++.      .+++++|+||.|++||++||+|+|||||||++++|+|+++|++|+|.++|
T Consensus        38 ~~l~i~nls~~------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g   98 (282)
T cd03291          38 NNLFFSNLCLV------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG   98 (282)
T ss_pred             CeEEEEEEEEe------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence            46899999884      14699999999999999999999999999999999999999999999987

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.49  E-value=5.5e-14  Score=140.25  Aligned_cols=63  Identities=22%  Similarity=0.425  Sum_probs=58.7

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~  278 (288)
                      .+.+++++|.|+    ++++++|+||.|++||++||+|+|||||||++|+|+|+.+|++|+|.++|.
T Consensus         3 ~l~i~~ls~~~~----~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~   65 (635)
T PRK11147          3 LISIHGAWLSFS----DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD   65 (635)
T ss_pred             EEEEeeEEEEeC----CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC
Confidence            478999999995    357999999999999999999999999999999999999999999999874

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.48  E-value=5.4e-14  Score=121.67  Aligned_cols=66  Identities=30%  Similarity=0.518  Sum_probs=61.6

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  280 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i  280 (288)
                      ..+..+|++..|+    ++++++|+|+.|++||.-.|+|+|||||||++++++|+++|++|.+.+.|+..
T Consensus        30 ~li~l~~v~v~r~----gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~   95 (257)
T COG1119          30 PLIELKNVSVRRN----GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRF   95 (257)
T ss_pred             ceEEecceEEEEC----CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeec
Confidence            4689999999995    47899999999999999999999999999999999999999999999988764

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.48  E-value=8.5e-14  Score=133.81  Aligned_cols=68  Identities=32%  Similarity=0.521  Sum_probs=60.4

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS  279 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~  279 (288)
                      ..+.++|+++.|++. ..+++++|+||.+++||++||+|+|||||||++++|+|+.+|++|+|.++|.+
T Consensus        20 ~mL~lknL~~~~~~~-~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~   87 (549)
T PRK13545         20 PFDKLKDLFFRSKDG-EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA   87 (549)
T ss_pred             ceeEEEEEEEecCCC-ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEe
Confidence            358888998888642 12569999999999999999999999999999999999999999999999865

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.48  E-value=7e-14  Score=130.05  Aligned_cols=62  Identities=16%  Similarity=0.314  Sum_probs=55.3

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.+ |++|.|++    +. + |+||++++||+++|+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus         2 l~~-~l~k~~~~----~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~   63 (352)
T PRK11144          2 LEL-NFKQQLGD----LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLF   63 (352)
T ss_pred             eEE-EEEEEeCC----EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence            345 89999953    22 3 899999999999999999999999999999999999999999998875

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.48  E-value=6.5e-14  Score=137.74  Aligned_cols=63  Identities=32%  Similarity=0.499  Sum_probs=58.3

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  277 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g  277 (288)
                      .+.++|++|.|++   ++++++|+||+|++||++||+|+|||||||++|+|+|+.+|++|+|.+++
T Consensus         6 ~l~i~~l~~~y~~---~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~   68 (556)
T PRK11819          6 IYTMNRVSKVVPP---KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP   68 (556)
T ss_pred             EEEEeeEEEEeCC---CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC
Confidence            5889999999952   35799999999999999999999999999999999999999999999864

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.48  E-value=4.9e-14  Score=136.92  Aligned_cols=69  Identities=29%  Similarity=0.483  Sum_probs=61.3

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-CCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-t~G~i~i~g~~i~  281 (288)
                      .+.++|+++.|++. +++.+++|+||+|++||++||+|+|||||||++|+|+|..+| ++|+|.++|.++.
T Consensus       257 ~l~~~~l~~~~~~~-~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~  326 (500)
T TIGR02633       257 ILEARNLTCWDVIN-PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVD  326 (500)
T ss_pred             eEEEeCCccccccc-ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECC
Confidence            68999999988421 124699999999999999999999999999999999999995 8999999998874

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.48  E-value=6.2e-14  Score=130.55  Aligned_cols=59  Identities=20%  Similarity=0.410  Sum_probs=54.1

Q ss_pred             eeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         217 RLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       217 ~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      |++|.|++    +. + |+||++++||+++|+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus         4 ~l~~~~~~----~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~   62 (354)
T TIGR02142         4 RFSKRLGD----FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLF   62 (354)
T ss_pred             EEEEEECC----EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc
Confidence            78999953    33 4 899999999999999999999999999999999999999999998875

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.48  E-value=8.5e-14  Score=136.18  Aligned_cols=64  Identities=31%  Similarity=0.535  Sum_probs=59.3

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~  278 (288)
                      ..+.++|++|.|++    +.+++|+||.+++||++||+|+|||||||++|+|+|+.+|++|+|.++|.
T Consensus       318 ~~l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~  381 (530)
T PRK15064        318 NALEVENLTKGFDN----GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN  381 (530)
T ss_pred             ceEEEEeeEEeeCC----ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc
Confidence            36899999999953    46999999999999999999999999999999999999999999999873

>KOG0057|consensus

Probab=99.48  E-value=7.2e-14  Score=132.33  Aligned_cols=70  Identities=23%  Similarity=0.459  Sum_probs=64.5

Q ss_pred             CCCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         209 SGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       209 ~~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .++.++.+|++..|++   ++++++++||+|++||.+||+|+|||||||.+|+|-++.+ .+|+|+|+|+++++
T Consensus       348 ~~~~I~F~dV~f~y~~---k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~  417 (591)
T KOG0057|consen  348 FGGSIEFDDVHFSYGP---KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKE  417 (591)
T ss_pred             CCCcEEEEeeEEEeCC---CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhh
Confidence            3456999999999974   4569999999999999999999999999999999999999 99999999999865

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.48  E-value=7.2e-14  Score=137.80  Aligned_cols=69  Identities=20%  Similarity=0.402  Sum_probs=63.4

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.+++++..|+.  +++++++|+||++++||+++|+|+|||||||++++|+|+++|++|+|.++|.++++
T Consensus       313 ~I~~~~v~~~y~~--~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~  381 (569)
T PRK10789        313 ELDVNIRQFTYPQ--TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTK  381 (569)
T ss_pred             cEEEEEEEEECCC--CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhh
Confidence            4889999999964  23579999999999999999999999999999999999999999999999998754

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.48  E-value=5.1e-14  Score=117.93  Aligned_cols=67  Identities=28%  Similarity=0.513  Sum_probs=61.3

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.+++++-+|++  .+..+++|+|++|.+||.+.+|||+||||||++++++|+.+|++|+|.+||..|.
T Consensus         4 l~~~~~sl~y~g--~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~   70 (259)
T COG4525           4 LNVSHLSLSYEG--KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIE   70 (259)
T ss_pred             eehhheEEecCC--cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEecc
Confidence            567888999975  3356999999999999999999999999999999999999999999999999875

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.48  E-value=9e-14  Score=138.68  Aligned_cols=63  Identities=32%  Similarity=0.550  Sum_probs=58.5

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  277 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g  277 (288)
                      ..+.++|++|.|+    ++.+++|+||.|++||++||+|+|||||||++|+|+|+.+|++|+|.+++
T Consensus       311 ~~l~~~~l~~~y~----~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~  373 (638)
T PRK10636        311 PLLKMEKVSAGYG----DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK  373 (638)
T ss_pred             ceEEEEeeEEEeC----CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC
Confidence            4689999999995    35699999999999999999999999999999999999999999999863

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.47  E-value=8.4e-14  Score=137.92  Aligned_cols=68  Identities=19%  Similarity=0.304  Sum_probs=63.2

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+++++++..|++   ++++++|+||++++||.+||+|+|||||||++|+|+|+++|++|+|.++|.++++
T Consensus       340 ~i~~~~v~f~y~~---~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~  407 (592)
T PRK10790        340 RIDIDNVSFAYRD---DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSS  407 (592)
T ss_pred             eEEEEEEEEEeCC---CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhh
Confidence            5899999999963   3569999999999999999999999999999999999999999999999998863

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.47  E-value=1e-13  Score=136.36  Aligned_cols=63  Identities=35%  Similarity=0.635  Sum_probs=58.4

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  277 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g  277 (288)
                      ..+.++++++.|++    +.+++|+||+|++||++||+|+|||||||++++|+|+.+|++|+|++++
T Consensus       323 ~~l~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~  385 (556)
T PRK11819        323 KVIEAENLSKSFGD----RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE  385 (556)
T ss_pred             eEEEEEeEEEEECC----eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence            36899999999953    5699999999999999999999999999999999999999999999954

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=6.8e-14  Score=132.31  Aligned_cols=70  Identities=24%  Similarity=0.467  Sum_probs=65.2

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++++|++..|++  ++.++++|+||++++||.++|+|++||||||+++.|+|.++|++|+|..+|.++..
T Consensus       335 ~~l~~~~vsF~y~~--~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~  404 (573)
T COG4987         335 QALELRNVSFTYPG--QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIAS  404 (573)
T ss_pred             ceeeeccceeecCC--CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhh
Confidence            37899999999986  44579999999999999999999999999999999999999999999999988764

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.47  E-value=8.5e-14  Score=140.33  Aligned_cols=70  Identities=23%  Similarity=0.419  Sum_probs=64.2

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..++++|+++.|++  +++++++|+||++++||+++|+|+|||||||++|+|+|+++|++|+|.++|.++++
T Consensus       454 ~~i~~~~vsf~y~~--~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~  523 (694)
T TIGR01846       454 GAITFENIRFRYAP--DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAI  523 (694)
T ss_pred             CeEEEEEEEEEcCC--CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhh
Confidence            35999999999964  23569999999999999999999999999999999999999999999999999864

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.47  E-value=1e-13  Score=138.26  Aligned_cols=62  Identities=31%  Similarity=0.417  Sum_probs=57.8

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM  276 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~  276 (288)
                      ..+.++|+++.|++    +++++|+||.|++||++||+|+|||||||++|+|+|+.+|++|+|.++
T Consensus       318 ~~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~  379 (635)
T PRK11147        318 IVFEMENVNYQIDG----KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCG  379 (635)
T ss_pred             ceEEEeeeEEEECC----eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEC
Confidence            36899999999953    569999999999999999999999999999999999999999999984

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=9.8e-14  Score=118.90  Aligned_cols=68  Identities=25%  Similarity=0.375  Sum_probs=61.2

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC--CCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~--~pt~G~i~i~g~~i~~  282 (288)
                      .+.++||+..-.+   ++.+++++|++|++||+.+|+|||||||||+.+.|+|..  ++|+|+|.++|.||.+
T Consensus         3 ~L~I~dLhv~v~~---~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~   72 (251)
T COG0396           3 MLEIKDLHVEVEG---KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILE   72 (251)
T ss_pred             eeEEeeeEEEecC---chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccccc
Confidence            4788999887643   258999999999999999999999999999999999987  8999999999999864

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.47  E-value=9.6e-14  Score=136.47  Aligned_cols=64  Identities=31%  Similarity=0.479  Sum_probs=58.7

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  277 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g  277 (288)
                      ..+.++|++|.|++   ++++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.+++
T Consensus         3 ~~i~~~nls~~~~~---~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~   66 (552)
T TIGR03719         3 YIYTMNRVSKVVPP---KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP   66 (552)
T ss_pred             EEEEEeeEEEecCC---CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC
Confidence            36889999999952   35799999999999999999999999999999999999999999999875

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.46  E-value=1.1e-13  Score=136.98  Aligned_cols=68  Identities=26%  Similarity=0.436  Sum_probs=62.9

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|+++.|++   ++++++|+||++++||++||+|+|||||||++++|+|+++|++|+|.++|.++.+
T Consensus       334 ~i~~~~v~~~y~~---~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~  401 (585)
T TIGR01192       334 AVEFRHITFEFAN---SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINT  401 (585)
T ss_pred             eEEEEEEEEECCC---CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhh
Confidence            5899999999963   2468999999999999999999999999999999999999999999999998754

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.46  E-value=1.3e-13  Score=135.49  Aligned_cols=63  Identities=35%  Similarity=0.608  Sum_probs=58.3

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  277 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g  277 (288)
                      ..+.++|+++.|++    +.+++|+||.|++||++||+|+|||||||++++|+|+.+|++|+|++++
T Consensus       321 ~~l~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~  383 (552)
T TIGR03719       321 KVIEAENLSKGFGD----KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE  383 (552)
T ss_pred             eEEEEeeEEEEECC----eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC
Confidence            36899999999953    5699999999999999999999999999999999999999999999854

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=7.9e-14  Score=133.33  Aligned_cols=68  Identities=31%  Similarity=0.548  Sum_probs=61.8

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+..+|+++.|++   ++++++|+||++++||.++|+|+|||||||++++|.|+.+|++|+|.+||.+.++
T Consensus       320 ei~~~~l~~~y~~---g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~  387 (559)
T COG4988         320 EISLENLSFRYPD---GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRD  387 (559)
T ss_pred             eeeecceEEecCC---CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccc
Confidence            3556699999975   3489999999999999999999999999999999999999999999999998753

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.46  E-value=1.5e-13  Score=135.71  Aligned_cols=71  Identities=27%  Similarity=0.467  Sum_probs=64.1

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..++++|++..|+.. +++++++|+||+++|||+++|+|+||+||||++|.|+|+++|++|+|.++|.++++
T Consensus       336 ~~i~~~~v~f~y~~~-~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~  406 (576)
T TIGR02204       336 GEIEFEQVNFAYPAR-PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQ  406 (576)
T ss_pred             ceEEEEEEEEECCCC-CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHh
Confidence            358999999999642 22579999999999999999999999999999999999999999999999988753

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.46  E-value=1.7e-13  Score=137.01  Aligned_cols=71  Identities=27%  Similarity=0.454  Sum_probs=63.9

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|+++.|+..++.+++++|+||++++||+.+|+|+||+||||++|+|+|+.+|++|++.++|.++.+
T Consensus         4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~   74 (648)
T PRK10535          4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVAT   74 (648)
T ss_pred             EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCc
Confidence            58899999999642223579999999999999999999999999999999999999999999999998764

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.46  E-value=1e-13  Score=135.55  Aligned_cols=69  Identities=32%  Similarity=0.479  Sum_probs=61.0

Q ss_pred             eEEEEeeeEEecccc-------ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSK-------DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~-------~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.++|+++.|+...       +++.+++|+||+|++||++||+|+|||||||++|+|+|+.+ ++|+|+++|.++.
T Consensus       275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~  350 (529)
T PRK15134        275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLH  350 (529)
T ss_pred             cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcc
Confidence            588999999995211       13579999999999999999999999999999999999985 8999999998874

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.45  E-value=1.1e-13  Score=134.16  Aligned_cols=65  Identities=28%  Similarity=0.520  Sum_probs=59.7

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ..+.++|+++.+      +.+++|+||.|++||++||+|+|||||||++|+|+|+.+|++|+|+++|.++.
T Consensus       249 ~~i~~~~l~~~~------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~  313 (491)
T PRK10982        249 VILEVRNLTSLR------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKIN  313 (491)
T ss_pred             cEEEEeCccccc------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECC
Confidence            368899998863      24999999999999999999999999999999999999999999999998775

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.45  E-value=1.6e-13  Score=135.25  Aligned_cols=69  Identities=25%  Similarity=0.460  Sum_probs=63.6

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.+.++|++..|++  +++++++|+||.+++||+++|+|+||+||||+++.|+|+++|++|+|+++|.+++
T Consensus       329 ~~i~~~~v~f~y~~--~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~  397 (571)
T TIGR02203       329 GDVEFRNVTFRYPG--RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLA  397 (571)
T ss_pred             CeEEEEEEEEEcCC--CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHH
Confidence            35999999999964  2357999999999999999999999999999999999999999999999998875

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.44  E-value=2e-13  Score=135.17  Aligned_cols=68  Identities=26%  Similarity=0.484  Sum_probs=63.1

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|++..|++   ++++++|+|++++|||.++|+|+|||||||++|+|+|+++|++|+|.++|.++.+
T Consensus       334 ~I~~~~vsf~y~~---~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~  401 (588)
T PRK13657        334 AVEFDDVSFSYDN---SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRT  401 (588)
T ss_pred             eEEEEEEEEEeCC---CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhh
Confidence            5899999999963   2469999999999999999999999999999999999999999999999998764

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.44  E-value=2e-13  Score=135.07  Aligned_cols=67  Identities=24%  Similarity=0.426  Sum_probs=60.5

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|++..|.+   ++++++|+||+++|||+++|+|+|||||||++++|+|++ |++|+|.++|.|+++
T Consensus       349 ~i~~~~vsf~~~~---~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~  415 (588)
T PRK11174        349 TIEAEDLEILSPD---GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRE  415 (588)
T ss_pred             eEEEEeeEEeccC---CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEeccc
Confidence            5899999865542   357999999999999999999999999999999999999 999999999998864

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.44  E-value=1.7e-13  Score=133.84  Aligned_cols=60  Identities=38%  Similarity=0.619  Sum_probs=55.4

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC--CCCCceEEEc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVM  276 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~--~pt~G~i~i~  276 (288)
                      +.++|++|.|+    ++++++|+||.+++||++||+|+|||||||++|+|+|+.  +|++|+|.++
T Consensus         1 l~~~~l~~~~~----~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~   62 (520)
T TIGR03269         1 IEVKNLTKKFD----GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYH   62 (520)
T ss_pred             CEEEEEEEEEC----CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEe
Confidence            46899999995    256999999999999999999999999999999999997  7999999997

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.44  E-value=2.2e-13  Score=134.24  Aligned_cols=68  Identities=32%  Similarity=0.539  Sum_probs=63.9

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .++.+|++..|++   ++++++|+||++++||.+||+|+|||||||+.+.|.|+++|++|+|.+||.|+++
T Consensus       328 ~I~f~~vsf~y~~---~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~  395 (567)
T COG1132         328 SIEFENVSFSYPG---KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRD  395 (567)
T ss_pred             eEEEEEEEEEcCC---CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhh
Confidence            4999999999963   4689999999999999999999999999999999999999999999999999864

>PLN03140 ABC transporter G family member; Provisional

Probab=99.43  E-value=6.4e-12  Score=134.74  Aligned_cols=70  Identities=19%  Similarity=0.281  Sum_probs=60.0

Q ss_pred             eEEEEeeeEEecccc---------ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC--CCceEEEccccc
Q psy7219         212 VLVVKRLFKIYANSK---------DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSI  280 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~---------~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p--t~G~i~i~g~~i  280 (288)
                      .+..+|++...+.+.         +++.+++|+|+.+++||+++|+|+|||||||++++|+|..++  .+|++.++|++.
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~  946 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK  946 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence            478899988775321         234799999999999999999999999999999999999773  689999999886


Q ss_pred             c
Q psy7219         281 R  281 (288)
Q Consensus       281 ~  281 (288)
                      .
T Consensus       947 ~  947 (1470)
T PLN03140        947 K  947 (1470)
T ss_pred             C
Confidence            5

>KOG0056|consensus

Probab=99.43  E-value=2.2e-13  Score=127.54  Aligned_cols=69  Identities=29%  Similarity=0.464  Sum_probs=65.1

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..++.+|++..|.+   ++++++|+||.+.+|+.++|+||+||||||++++|-.+++.++|.|.++|+||+.
T Consensus       536 G~i~fsnvtF~Y~p---~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrn  604 (790)
T KOG0056|consen  536 GKIEFSNVTFAYDP---GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRN  604 (790)
T ss_pred             CeEEEEEeEEecCC---CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHH
Confidence            36999999999974   6899999999999999999999999999999999999999999999999999863

>PLN03130 ABC transporter C family member; Provisional

Probab=99.42  E-value=3.9e-13  Score=145.53  Aligned_cols=69  Identities=20%  Similarity=0.395  Sum_probs=64.0

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .++++|++..|++  +.+++++|+||+|++||++||+|++||||||++++|.|+++|++|+|.++|.|+++
T Consensus      1237 ~I~f~nVsf~Y~~--~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~ 1305 (1622)
T PLN03130       1237 SIKFEDVVLRYRP--ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISK 1305 (1622)
T ss_pred             cEEEEEEEEEeCC--CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEeccc
Confidence            5999999999964  23579999999999999999999999999999999999999999999999999864

>PLN03232 ABC transporter C family member; Provisional

Probab=99.41  E-value=4e-13  Score=144.93  Aligned_cols=69  Identities=20%  Similarity=0.360  Sum_probs=63.9

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .++++|++..|++  +.+++++|+||+|++||.+||+|++||||||++++|.|+++|++|+|.+||.|+++
T Consensus      1234 ~I~f~nVsf~Y~~--~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~ 1302 (1495)
T PLN03232       1234 SIKFEDVHLRYRP--GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAK 1302 (1495)
T ss_pred             cEEEEEEEEEECC--CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhh
Confidence            5999999999954  23579999999999999999999999999999999999999999999999999864

>PLN03073 ABC transporter F family; Provisional

Probab=99.41  E-value=5.2e-13  Score=134.37  Aligned_cols=64  Identities=22%  Similarity=0.469  Sum_probs=58.7

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  277 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g  277 (288)
                      ..+.++++++.|++   ++.+++|+||+|++||++||+|+|||||||++|+|+|+.+|++|+|++++
T Consensus       507 ~~L~~~~ls~~y~~---~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~  570 (718)
T PLN03073        507 PIISFSDASFGYPG---GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA  570 (718)
T ss_pred             ceEEEEeeEEEeCC---CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC
Confidence            46899999999953   24699999999999999999999999999999999999999999999875

>KOG0055|consensus

Probab=99.40  E-value=3.6e-13  Score=138.21  Aligned_cols=70  Identities=23%  Similarity=0.431  Sum_probs=65.2

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .++.+|++++|+.. ++.++++|+||.|++||+++|+|+||+||||.+++|.++++|++|+|+++|.|+++
T Consensus       350 ~ief~nV~FsYPsR-pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~  419 (1228)
T KOG0055|consen  350 EIEFRNVCFSYPSR-PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRN  419 (1228)
T ss_pred             ceEEEEEEecCCCC-CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchh
Confidence            58999999999863 35679999999999999999999999999999999999999999999999999864

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.40  E-value=4e-13  Score=130.24  Aligned_cols=62  Identities=34%  Similarity=0.647  Sum_probs=58.2

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  277 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g  277 (288)
                      .+.++++++.|+    +++.++|+|+.+.+||++||+|+|||||||++|+|+|...|++|+|...+
T Consensus         3 ~i~~~~ls~~~g----~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~   64 (530)
T COG0488           3 MITLENLSLAYG----DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK   64 (530)
T ss_pred             eEEEeeeEEeeC----CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC
Confidence            578999999994    47899999999999999999999999999999999999999999998875

>PLN03211 ABC transporter G-25; Provisional

Probab=99.40  E-value=9.1e-13  Score=131.70  Aligned_cols=64  Identities=22%  Similarity=0.353  Sum_probs=55.4

Q ss_pred             EEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC--CceEEEccccccc
Q psy7219         215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT--SGNAYVMNHSIRD  282 (288)
Q Consensus       215 ~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt--~G~i~i~g~~i~~  282 (288)
                      .++++|.|+    ++.+++|+|+.+++||++||+|||||||||++++|+|..+|+  +|+|.++|+++.+
T Consensus        71 ~~~l~~~~~----~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~  136 (659)
T PLN03211         71 ISDETRQIQ----ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK  136 (659)
T ss_pred             cccccccCC----CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch
Confidence            344555553    367999999999999999999999999999999999999986  8999999998753

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.40  E-value=6.6e-13  Score=119.28  Aligned_cols=69  Identities=28%  Similarity=0.489  Sum_probs=62.0

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-C----CCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-P----TSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-p----t~G~i~i~g~~i~  281 (288)
                      +.++||+..|...++...||+|+||+|++||++||+|.+|||||||.+.|.|+.+ |    ++|+|.++|.++.
T Consensus         2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~   75 (316)
T COG0444           2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLL   75 (316)
T ss_pred             ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccc
Confidence            6799999999765445679999999999999999999999999999999999998 3    6799999999764

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.39  E-value=5.1e-13  Score=129.87  Aligned_cols=61  Identities=41%  Similarity=0.624  Sum_probs=56.0

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.++++++         .+++|+||.|++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus       257 ~l~~~~l~~---------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~  317 (501)
T PRK10762        257 RLKVDNLSG---------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVV  317 (501)
T ss_pred             EEEEeCccc---------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence            577888863         2799999999999999999999999999999999999999999999998874

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.39  E-value=4.1e-13  Score=119.04  Aligned_cols=50  Identities=30%  Similarity=0.476  Sum_probs=47.5

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +++|+||++++||++||+|+|||||||++++|+|+.++ +|++.++|.++.
T Consensus        11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~   60 (248)
T PRK03695         11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLE   60 (248)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecC
Confidence            89999999999999999999999999999999999864 999999999875

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.39  E-value=4.7e-13  Score=109.67  Aligned_cols=55  Identities=31%  Similarity=0.522  Sum_probs=52.6

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.+.++++||.|.+||..+|.||+||||||++|+++-+.+||+|++++.|.++++
T Consensus        15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~   69 (223)
T COG4619          15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVST   69 (223)
T ss_pred             CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccc
Confidence            4579999999999999999999999999999999999999999999999999865

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.39  E-value=4.9e-13  Score=113.51  Aligned_cols=69  Identities=23%  Similarity=0.391  Sum_probs=63.3

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC-----ceEEEccccccch
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS-----GNAYVMNHSIRDS  283 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~-----G~i~i~g~~i~~~  283 (288)
                      ..+.+++|+..|+    ++.|++|+|++|+++++++++||+||||||++|++..+....+     |+|.++|++|.+.
T Consensus         6 ~~~~~~~l~~yYg----~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~   79 (253)
T COG1117           6 PAIEVRDLNLYYG----DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP   79 (253)
T ss_pred             ceeEecceeEEEC----chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCC
Confidence            4688999999995    5789999999999999999999999999999999999988876     9999999998764

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.39  E-value=7.8e-13  Score=142.91  Aligned_cols=70  Identities=20%  Similarity=0.282  Sum_probs=64.5

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..++.+|++..|++  +..++++|+||+|++||++||+|++||||||+++.|.|+++|++|+|.++|.|+++
T Consensus      1283 g~I~f~nVsf~Y~~--~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~ 1352 (1522)
T TIGR00957      1283 GRVEFRNYCLRYRE--DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAK 1352 (1522)
T ss_pred             CcEEEEEEEEEeCC--CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccc
Confidence            36999999999964  23479999999999999999999999999999999999999999999999999864

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PTZ00243 ABC transporter; Provisional

Probab=99.38  E-value=7.6e-13  Score=142.97  Aligned_cols=69  Identities=22%  Similarity=0.334  Sum_probs=64.0

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|++..|++  +..++++|+||+|++||.+||+|++||||||++++|.|+++|++|+|.++|.|+++
T Consensus      1308 ~I~f~nVsf~Y~~--~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~ 1376 (1560)
T PTZ00243       1308 SLVFEGVQMRYRE--GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGA 1376 (1560)
T ss_pred             eEEEEEEEEEeCC--CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccc
Confidence            5999999999964  23469999999999999999999999999999999999999999999999999864

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.38  E-value=5.9e-13  Score=142.94  Aligned_cols=69  Identities=20%  Similarity=0.455  Sum_probs=62.3

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE-cccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV-MNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i-~g~~i~  281 (288)
                      .++++|+++.|+.. +++++++|+||.+++||++||+|+|||||||++++|+|+++|++|+|++ +|.+++
T Consensus       382 ~I~~~nVsf~Y~~~-~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~  451 (1466)
T PTZ00265        382 KIQFKNVRFHYDTR-KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLK  451 (1466)
T ss_pred             cEEEEEEEEEcCCC-CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchh
Confidence            58999999999742 2357999999999999999999999999999999999999999999999 567774

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.38  E-value=5.9e-13  Score=129.42  Aligned_cols=62  Identities=37%  Similarity=0.553  Sum_probs=56.1

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.+++++.        +.+++|+||+|++||++||+|+|||||||++|+|+|+.+|++|+|+++|+++.
T Consensus       257 ~l~~~~~~~--------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~  318 (501)
T PRK11288        257 RLRLDGLKG--------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPID  318 (501)
T ss_pred             EEEEecccc--------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECC
Confidence            577888752        14899999999999999999999999999999999999999999999998764

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.37  E-value=1.2e-12  Score=125.46  Aligned_cols=72  Identities=31%  Similarity=0.466  Sum_probs=65.0

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC----CceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT----SGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt----~G~i~i~g~~i~~  282 (288)
                      ..++++||++.|....+...||+|+||+|.+||++||+|.+||||||+.+.|.|+.++.    +|+|.++|.++..
T Consensus         4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~   79 (539)
T COG1123           4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLG   79 (539)
T ss_pred             ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhc
Confidence            37899999999986544457999999999999999999999999999999999999998    7999999997653

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.36  E-value=1.4e-12  Score=108.28  Aligned_cols=64  Identities=25%  Similarity=0.403  Sum_probs=55.9

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.+++++..|+.      .--..++.|++||+++|+||+||||||++++++|++.|.+|+++++|.|...
T Consensus         2 l~L~~V~~~y~~------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~   65 (231)
T COG3840           2 LALDDVRFSYGH------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTA   65 (231)
T ss_pred             ccccceEEeeCc------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCc
Confidence            456778888842      4446889999999999999999999999999999999999999999998753

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.36  E-value=1.5e-12  Score=119.21  Aligned_cols=73  Identities=27%  Similarity=0.424  Sum_probs=64.6

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc-hhhh
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDL  286 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~-~~~~  286 (288)
                      +.++.+|++..|..   ..--|..+|++|++||.+=|+|.||+||||+.+.|||+++|++|+|++||.+++. ++++
T Consensus       321 ~~lelrnvrfay~~---~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~led  394 (546)
T COG4615         321 KTLELRNVRFAYQD---NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLED  394 (546)
T ss_pred             cceeeeeeeeccCc---ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHH
Confidence            47999999999964   1246889999999999999999999999999999999999999999999999975 3343

>PRK13409 putative ATPase RIL; Provisional

Probab=99.36  E-value=3.5e-13  Score=133.06  Aligned_cols=62  Identities=26%  Similarity=0.406  Sum_probs=54.8

Q ss_pred             eeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEE-----------Eccccccc
Q psy7219         217 RLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY-----------VMNHSIRD  282 (288)
Q Consensus       217 ~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~-----------i~g~~i~~  282 (288)
                      ++++.|++   ...++++++ .+++||++||+|+|||||||++|+|+|+++|++|++.           ++|.++.+
T Consensus        78 ~~~~~yg~---~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~  150 (590)
T PRK13409         78 EPVHRYGV---NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQN  150 (590)
T ss_pred             CceEEecC---CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHH
Confidence            36788852   235999999 9999999999999999999999999999999999997           88988753

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.35  E-value=1.7e-12  Score=122.22  Aligned_cols=71  Identities=34%  Similarity=0.569  Sum_probs=63.6

Q ss_pred             CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ...+.++++...-+  ..+++.++|+||.+.+||..|++||+||||||+.|+|.|..+|++|+|+++|.+++.
T Consensus       332 ~g~L~Ve~l~~~PP--g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~q  402 (580)
T COG4618         332 QGALSVERLTAAPP--GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQ  402 (580)
T ss_pred             CceeeEeeeeecCC--CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhc
Confidence            34688999977543  356799999999999999999999999999999999999999999999999999864

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.35  E-value=9.6e-13  Score=108.52  Aligned_cols=63  Identities=32%  Similarity=0.563  Sum_probs=57.8

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  277 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g  277 (288)
                      ..+.+++++|.|++    ....+|+||+++|||+.||+|++|+||||++++|+|-..|++|++...-
T Consensus         5 PLL~V~~lsk~Yg~----~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~   67 (258)
T COG4107           5 PLLSVSGLSKLYGP----GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRM   67 (258)
T ss_pred             cceeehhhhhhhCC----CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEc
Confidence            36889999999964    4589999999999999999999999999999999999999999998754

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.34  E-value=1.3e-12  Score=115.81  Aligned_cols=51  Identities=35%  Similarity=0.638  Sum_probs=45.9

Q ss_pred             cceeeeEEEEe-----CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219         230 PAVNQISFGVG-----RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  280 (288)
Q Consensus       230 ~av~~is~~v~-----~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i  280 (288)
                      ..++++++++.     +||++||+|+|||||||++++|+|+.+|++|+|.++|..+
T Consensus         8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i   63 (246)
T cd03237           8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV   63 (246)
T ss_pred             cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceE
Confidence            47778888886     7999999999999999999999999999999999998543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.34  E-value=2.4e-12  Score=128.95  Aligned_cols=64  Identities=20%  Similarity=0.292  Sum_probs=58.5

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  277 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g  277 (288)
                      ..++++|+++.|++   ++++++|+||++++||+++|+|+|||||||++|+|+|+++|++|++.+++
T Consensus       450 ~~i~~~nv~~~~~~---~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~  513 (659)
T TIGR00954       450 NGIKFENIPLVTPN---GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA  513 (659)
T ss_pred             CeEEEEeeEEECCC---CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC
Confidence            35899999999953   34699999999999999999999999999999999999999999998865

>PLN03073 ABC transporter F family; Provisional

Probab=99.33  E-value=2.9e-12  Score=129.03  Aligned_cols=64  Identities=19%  Similarity=0.308  Sum_probs=56.6

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC---CCCCceEEEccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI---KPTSGNAYVMNH  278 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~---~pt~G~i~i~g~  278 (288)
                      ..+.++|+++.|++    +++++|+||.|.+||++||+|+|||||||++|+|+|..   .|++|+|.+.++
T Consensus       176 ~~I~i~nls~~y~~----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q  242 (718)
T PLN03073        176 KDIHMENFSISVGG----RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQ  242 (718)
T ss_pred             eeEEEceEEEEeCC----CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEec
Confidence            36999999999953    46999999999999999999999999999999999965   689999975444

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.33  E-value=1.6e-12  Score=126.76  Aligned_cols=61  Identities=33%  Similarity=0.455  Sum_probs=55.8

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.++|+++         .+++|+||.+++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus       268 ~l~~~~l~~---------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~  328 (510)
T PRK15439        268 VLTVEDLTG---------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEIN  328 (510)
T ss_pred             eEEEeCCCC---------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECC
Confidence            577888863         1699999999999999999999999999999999999999999999998774

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.32  E-value=2.3e-12  Score=138.48  Aligned_cols=56  Identities=16%  Similarity=0.292  Sum_probs=51.5

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP  268 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p  268 (288)
                      .++++|+++.|++. +++++++|+||+|++||++||+|++||||||++++|.|+++|
T Consensus      1165 ~I~f~nVsF~Y~~~-~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265       1165 KIEIMDVNFRYISR-PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred             eEEEEEEEEECCCC-CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence            59999999999742 235799999999999999999999999999999999999999

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.32  E-value=2.7e-12  Score=105.50  Aligned_cols=66  Identities=29%  Similarity=0.450  Sum_probs=58.1

Q ss_pred             eEEEEeeeEEeccc---cccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219         212 VLVVKRLFKIYANS---KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  277 (288)
Q Consensus       212 ~l~~~~l~k~y~~~---~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g  277 (288)
                      .+.+++++|+|--.   +-..++++|+||+|+.|||+.|=||+|+||||++|+|-|-+.|++|+|++.-
T Consensus         4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H   72 (235)
T COG4778           4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRH   72 (235)
T ss_pred             eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEe
Confidence            57899999998432   1234799999999999999999999999999999999999999999999854

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.32  E-value=3.5e-12  Score=114.00  Aligned_cols=71  Identities=32%  Similarity=0.576  Sum_probs=61.1

Q ss_pred             eEEEEeeeEEecccc--------------------ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc
Q psy7219         212 VLVVKRLFKIYANSK--------------------DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG  271 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~--------------------~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G  271 (288)
                      .+.++|+.|.|+...                    +-...|+|+||+|++||+|.|.|-+|+||||+.+++.++.+||+|
T Consensus         4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G   83 (386)
T COG4175           4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG   83 (386)
T ss_pred             eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence            467788888875420                    112469999999999999999999999999999999999999999


Q ss_pred             eEEEccccccc
Q psy7219         272 NAYVMNHSIRD  282 (288)
Q Consensus       272 ~i~i~g~~i~~  282 (288)
                      +|.++|.|+.+
T Consensus        84 ~ilv~g~di~~   94 (386)
T COG4175          84 EILVDGKDIAK   94 (386)
T ss_pred             eEEECCcchhc
Confidence            99999999854

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.31  E-value=2.8e-12  Score=124.37  Aligned_cols=65  Identities=34%  Similarity=0.545  Sum_probs=59.8

Q ss_pred             CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219         210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  277 (288)
Q Consensus       210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g  277 (288)
                      ..++.++|++|.|.+   +++.++++||.|.+||.+||+||||+||||++|+|+|...|.+|+|.++.
T Consensus       319 ~~vl~~~~~~~~y~~---~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~  383 (530)
T COG0488         319 KLVLEFENVSKGYDG---GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE  383 (530)
T ss_pred             CeeEEEeccccccCC---CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC
Confidence            357899999999964   36899999999999999999999999999999999999999999998764

>PRK13409 putative ATPase RIL; Provisional

Probab=99.31  E-value=3.8e-12  Score=125.80  Aligned_cols=61  Identities=30%  Similarity=0.407  Sum_probs=55.8

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM  276 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~  276 (288)
                      ..+.++++++.|++    . .++++|+.+++||++||+|+|||||||++|+|+|+.+|++|+|.++
T Consensus       339 ~~l~~~~ls~~~~~----~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~  399 (590)
T PRK13409        339 TLVEYPDLTKKLGD----F-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE  399 (590)
T ss_pred             eEEEEcceEEEECC----E-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe
Confidence            36899999999953    2 4899999999999999999999999999999999999999999875

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.30  E-value=1.9e-12  Score=107.22  Aligned_cols=70  Identities=26%  Similarity=0.440  Sum_probs=64.6

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchh
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM  284 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~  284 (288)
                      ..+.++|+.|.|+    ++.+++++|+.-++|+++.|+|.+|+||||.+++|.=+++|++|.|.++|..|+..+
T Consensus         5 ~~l~v~dlHK~~G----~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~   74 (256)
T COG4598           5 NALEVEDLHKRYG----EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKR   74 (256)
T ss_pred             cceehhHHHhhcc----cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeee
Confidence            4688999999995    578999999999999999999999999999999999999999999999999886443

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.30  E-value=5.8e-12  Score=135.96  Aligned_cols=69  Identities=28%  Similarity=0.427  Sum_probs=63.2

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..++++|++..|++  +.+++++|+||.|++||++||+|+|||||||++++|.|+++ ++|+|.++|.|+++
T Consensus      1216 g~I~f~nVs~~Y~~--~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~ 1284 (1490)
T TIGR01271      1216 GQMDVQGLTAKYTE--AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNS 1284 (1490)
T ss_pred             CeEEEEEEEEEeCC--CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEccc
Confidence            36999999999974  34679999999999999999999999999999999999997 89999999999864

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>KOG0055|consensus

Probab=99.26  E-value=7.6e-12  Score=128.63  Aligned_cols=70  Identities=23%  Similarity=0.465  Sum_probs=65.7

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .++.+|++..|+. +++.++++|+|++|++||.++|+||+|+||||.+.+|...|+|++|.|.++|+|+++
T Consensus       987 ~I~~~~V~F~YPs-RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~ 1056 (1228)
T KOG0055|consen  987 DIEFRNVSFAYPT-RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKD 1056 (1228)
T ss_pred             EEEEeeeEeeCCC-CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCccccc
Confidence            4899999999985 456789999999999999999999999999999999999999999999999999864

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.24  E-value=9.3e-12  Score=104.73  Aligned_cols=47  Identities=17%  Similarity=0.233  Sum_probs=43.1

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~  278 (288)
                      ..++++|+||++++||+++|+|||||||||++|++.+    ++|++.++|.
T Consensus         7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~   53 (176)
T cd03238           7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISF   53 (176)
T ss_pred             eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCc
Confidence            3579999999999999999999999999999999963    6999999876

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0054|consensus

Probab=99.22  E-value=2.2e-11  Score=127.63  Aligned_cols=71  Identities=24%  Similarity=0.375  Sum_probs=65.5

Q ss_pred             CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +..++++|++-.|++  +..+++||+||.|++||.+||+|.+||||||+.+.|-++.+|++|+|.|||.||.+
T Consensus      1136 ~G~I~f~~~~~RYrp--~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~ 1206 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRP--NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISK 1206 (1381)
T ss_pred             CCeEEEEEeEEEeCC--CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeeccc
Confidence            347999999999975  34579999999999999999999999999999999999999999999999999864

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.19  E-value=3.7e-11  Score=130.12  Aligned_cols=65  Identities=22%  Similarity=0.424  Sum_probs=60.0

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  277 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g  277 (288)
                      ..+.++|+++.|++  +++++++|+||++++||+++|+|+|||||||++++|.|+++|++|++.++|
T Consensus       635 ~~i~~~~~~~~~~~--~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g  699 (1522)
T TIGR00957       635 NSITVHNATFTWAR--DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG  699 (1522)
T ss_pred             CcEEEEEeEEEcCC--CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC
Confidence            36999999999964  235799999999999999999999999999999999999999999999987

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.19  E-value=2.8e-11  Score=93.09  Aligned_cols=48  Identities=15%  Similarity=0.087  Sum_probs=44.6

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ++|+++++|.+++||+++|+|++||||||+++++.      +|++.++|.|+..
T Consensus         2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~   49 (107)
T cd00820           2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVE   49 (107)
T ss_pred             ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHH
Confidence            46999999999999999999999999999999986      8999999998754

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.18  E-value=2.3e-11  Score=121.06  Aligned_cols=55  Identities=27%  Similarity=0.310  Sum_probs=51.1

Q ss_pred             ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC---CceEEEcccccc
Q psy7219         227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIR  281 (288)
Q Consensus       227 ~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt---~G~i~i~g~~i~  281 (288)
                      +++++++|+|+.+++||+++|+|+|||||||++++|+|..+|+   +|+|.++|.++.
T Consensus        36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~   93 (617)
T TIGR00955        36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID   93 (617)
T ss_pred             CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC
Confidence            3567999999999999999999999999999999999999885   799999999875

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.13  E-value=4.9e-11  Score=127.98  Aligned_cols=54  Identities=19%  Similarity=0.128  Sum_probs=50.4

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC----CCCCceEEEcccccc
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI----KPTSGNAYVMNHSIR  281 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~----~pt~G~i~i~g~~i~  281 (288)
                      ++.+++|+|+.+++||+++|+|+|||||||++|+|+|..    +|++|+|.++|.++.
T Consensus        73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~  130 (1394)
T TIGR00956        73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPE  130 (1394)
T ss_pred             cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehH
Confidence            467999999999999999999999999999999999986    579999999999874

>PLN03140 ABC transporter G family member; Provisional

Probab=99.12  E-value=5.9e-11  Score=127.42  Aligned_cols=55  Identities=24%  Similarity=0.263  Sum_probs=51.6

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC---CceEEEccccccc
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIRD  282 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt---~G~i~i~g~~i~~  282 (288)
                      ++.+++|+|+.+++||+++|+|||||||||++|+|+|..+|+   +|+|.++|+++.+
T Consensus       177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~  234 (1470)
T PLN03140        177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNE  234 (1470)
T ss_pred             cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechh
Confidence            357999999999999999999999999999999999999998   9999999998743

>KOG2355|consensus

Probab=99.06  E-value=4.2e-10  Score=95.30  Aligned_cols=69  Identities=30%  Similarity=0.361  Sum_probs=63.0

Q ss_pred             CCCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219         209 SGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  280 (288)
Q Consensus       209 ~~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i  280 (288)
                      .+..+++.++...|+.   ..|.+-|+|++++.|...-++|.|||||||++|+|.|..-.-.|.|.+.|.+-
T Consensus        10 ~~~aievsgl~f~y~~---~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~Vlgrsa   78 (291)
T KOG2355|consen   10 SDFAIEVSGLQFKYKV---SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSA   78 (291)
T ss_pred             ccceEEEeccEEeccc---CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCc
Confidence            3458999999999975   34899999999999999999999999999999999999999999999999864

>KOG0065|consensus

Probab=99.04  E-value=5.7e-09  Score=108.06  Aligned_cols=71  Identities=25%  Similarity=0.280  Sum_probs=57.9

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC--CCceEEEcccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSIR  281 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p--t~G~i~i~g~~i~  281 (288)
                      ++...+|+.+.-+.+++++..++|++=-++||-..+|+|++|||||||+++|+|-..-  .+|+|.++|++..
T Consensus       786 ~V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~  858 (1391)
T KOG0065|consen  786 DVFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKD  858 (1391)
T ss_pred             ceEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCc
Confidence            4555666665544334567899999999999999999999999999999999997533  3689999999976

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.04  E-value=3.1e-10  Score=92.72  Aligned_cols=64  Identities=25%  Similarity=0.411  Sum_probs=59.1

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS  279 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~  279 (288)
                      .++++++.+.|+    ...++-|++|+-++||...||||+||||||+++.|.=++.|.+|+..|.|..
T Consensus         2 sirv~~in~~yg----~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~   65 (242)
T COG4161           2 SIQLNGINCFYG----AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNH   65 (242)
T ss_pred             ceEEcccccccc----cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccc
Confidence            378899999995    4679999999999999999999999999999999999999999999998754

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=99.03  E-value=2.1e-10  Score=108.78  Aligned_cols=51  Identities=14%  Similarity=0.145  Sum_probs=47.2

Q ss_pred             cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc-eEEEccccccc
Q psy7219         230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAYVMNHSIRD  282 (288)
Q Consensus       230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G-~i~i~g~~i~~  282 (288)
                      .|++++|+++++||+++|+|+|||||||+++  .|..+|++| +|.++|.++..
T Consensus        20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~   71 (504)
T TIGR03238        20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFS   71 (504)
T ss_pred             HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCC
Confidence            5899999999999999999999999999999  788888888 79999999854

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.02  E-value=6.4e-10  Score=102.53  Aligned_cols=70  Identities=30%  Similarity=0.379  Sum_probs=62.4

Q ss_pred             eEEEEeeeEEecccc-------ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSK-------DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~-------~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+..++++..|+-++       +...||+++||++++||..||+|.+|+||||+-++|.++.+++ |+|..+|.++..
T Consensus       276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~  352 (534)
T COG4172         276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG  352 (534)
T ss_pred             eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence            688999999997542       2246999999999999999999999999999999999999887 999999999863

>PLN03130 ABC transporter C family member; Provisional

Probab=99.01  E-value=5.3e-10  Score=121.53  Aligned_cols=65  Identities=20%  Similarity=0.446  Sum_probs=58.9

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC-ceEEEcc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS-GNAYVMN  277 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~-G~i~i~g  277 (288)
                      .+.++|++..|+.. +++++++|+||.+++||.++|+|++||||||+++.|.|+++|++ |+|.+.|
T Consensus       614 ~I~~~nvsf~y~~~-~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~  679 (1622)
T PLN03130        614 AISIKNGYFSWDSK-AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG  679 (1622)
T ss_pred             ceEEEeeEEEccCC-CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC
Confidence            59999999999642 23579999999999999999999999999999999999999999 8998765

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=98.99  E-value=5e-10  Score=121.12  Aligned_cols=49  Identities=27%  Similarity=0.609  Sum_probs=47.4

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  277 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g  277 (288)
                      +++++|+||.|++||+++|+|||||||||++++|.|+.+|++|+|.++|
T Consensus       439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g  487 (1490)
T TIGR01271       439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG  487 (1490)
T ss_pred             CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence            4689999999999999999999999999999999999999999999987

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>KOG0927|consensus

Probab=98.97  E-value=3.7e-10  Score=107.20  Aligned_cols=68  Identities=29%  Similarity=0.493  Sum_probs=60.0

Q ss_pred             CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219         210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  280 (288)
Q Consensus       210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i  280 (288)
                      ..++.++|+...|++   +....++++|+|..++.++++|||||||||++|+++|++.|+.|.+.-.-+..
T Consensus       387 ~pvi~~~nv~F~y~~---~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~  454 (614)
T KOG0927|consen  387 PPVIMVQNVSFGYSD---NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNK  454 (614)
T ss_pred             CCeEEEeccccCCCC---cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccccc
Confidence            457889999999975   22689999999999999999999999999999999999999999987765543

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=7.1e-10  Score=102.64  Aligned_cols=68  Identities=28%  Similarity=0.460  Sum_probs=63.6

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+..++++..|.+   .++.++++||.+++|+.++++|++|+||||+.+.|-.++++++|.|.++|+|+++
T Consensus       262 ~v~F~~V~F~y~~---~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~  329 (497)
T COG5265         262 AVAFINVSFAYDP---RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRD  329 (497)
T ss_pred             eEEEEEEEeeccc---cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHH
Confidence            5788999999974   6789999999999999999999999999999999999999999999999999864

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.96  E-value=1.3e-09  Score=100.50  Aligned_cols=72  Identities=26%  Similarity=0.401  Sum_probs=64.3

Q ss_pred             CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEcccccc
Q psy7219         210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR  281 (288)
Q Consensus       210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~  281 (288)
                      ...+.++|++..|....+...||+++||+|++||.++|+|.+|+|||-|..-+.|+.+.     -+|+|..+|.++-
T Consensus         4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll   80 (534)
T COG4172           4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLL   80 (534)
T ss_pred             CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhh
Confidence            35688999999997666677899999999999999999999999999999999999876     2689999999974

>PLN03232 ABC transporter C family member; Provisional

Probab=98.95  E-value=1.3e-09  Score=118.14  Aligned_cols=61  Identities=18%  Similarity=0.413  Sum_probs=55.2

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceE
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA  273 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i  273 (288)
                      .+.++|++..|+.. +++++++|+||+|++||.++|+|++||||||+++.|.|+++|++|.+
T Consensus       614 ~I~~~~vsF~y~~~-~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i  674 (1495)
T PLN03232        614 AISIKNGYFSWDSK-TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS  674 (1495)
T ss_pred             cEEEEeeEEEcCCC-CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCE
Confidence            58999999999642 23679999999999999999999999999999999999999999864

>PTZ00243 ABC transporter; Provisional

Probab=98.93  E-value=1.2e-09  Score=118.38  Aligned_cols=50  Identities=26%  Similarity=0.428  Sum_probs=46.9

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  277 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g  277 (288)
                      ++++++|+||.|++||+++|+|+|||||||++++|.|+.+|++|++.+++
T Consensus       672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~  721 (1560)
T PTZ00243        672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAER  721 (1560)
T ss_pred             CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC
Confidence            35699999999999999999999999999999999999999999998753

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.91  E-value=3e-09  Score=86.01  Aligned_cols=66  Identities=21%  Similarity=0.415  Sum_probs=56.3

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC---CceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt---~G~i~i~g~~i~~  282 (288)
                      +.++|++..-    +++-.+-++|++|.+||++-|.||+|+||||++.-+.|...+.   +|+++++++++..
T Consensus         3 l~l~nvsl~l----~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~   71 (213)
T COG4136           3 LCLKNVSLRL----PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM   71 (213)
T ss_pred             eeeeeeeecC----CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccc
Confidence            4566776544    3456889999999999999999999999999999999999885   7999999998753

>KOG0061|consensus

Probab=98.89  E-value=4.7e-09  Score=104.26  Aligned_cols=70  Identities=24%  Similarity=0.330  Sum_probs=58.2

Q ss_pred             eEEEEeeeEEecccc-ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC---CCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSK-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP---TSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~-~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p---t~G~i~i~g~~i~  281 (288)
                      .+..++++..-+++. +.+..++|+|..+++||..|++||+||||||++++|+|..+.   .+|+|.+||++..
T Consensus        25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~   98 (613)
T KOG0061|consen   25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRD   98 (613)
T ss_pred             eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCc
Confidence            456667766654421 247899999999999999999999999999999999999975   7999999996543

>KOG0054|consensus

Probab=98.80  E-value=1e-08  Score=107.96  Aligned_cols=69  Identities=19%  Similarity=0.403  Sum_probs=61.7

Q ss_pred             CCCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219         209 SGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       209 ~~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~  278 (288)
                      .+..+.+++.+....+ .++.+.++|+||.|++||.+|++|+-|||||++++.|.|+.++.+|++.++|.
T Consensus       515 ~~~~i~i~~~sfsW~~-~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs  583 (1381)
T KOG0054|consen  515 GENAIEIKNGSFSWDS-ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS  583 (1381)
T ss_pred             CCceEEEeeeeEecCC-CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe
Confidence            3457889999988865 23456999999999999999999999999999999999999999999999985

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.75  E-value=6.3e-09  Score=90.99  Aligned_cols=32  Identities=16%  Similarity=0.392  Sum_probs=30.3

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHH
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTF  259 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~  259 (288)
                      +..+++++||+|++||++||+|+|||||||++
T Consensus         7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~   38 (226)
T cd03270           7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLA   38 (226)
T ss_pred             hhhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence            46799999999999999999999999999995

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=98.70  E-value=6.8e-09  Score=88.93  Aligned_cols=48  Identities=17%  Similarity=0.317  Sum_probs=40.4

Q ss_pred             eeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC---------ceEEEcccccc
Q psy7219         233 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS---------GNAYVMNHSIR  281 (288)
Q Consensus       233 ~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~---------G~i~i~g~~i~  281 (288)
                      +++++++++| +.+|+|+|||||||++++|.|..+|..         |++.++|.++.
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~   70 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETR   70 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCC
Confidence            5689999999 999999999999999999999987663         35667776653

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>KOG0060|consensus

Probab=98.70  E-value=4.1e-08  Score=94.21  Aligned_cols=64  Identities=19%  Similarity=0.304  Sum_probs=57.3

Q ss_pred             CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219         210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV  275 (288)
Q Consensus       210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i  275 (288)
                      +..+++++++..-++  ++...++|+||.|++|+..-|.||||+|||+++|+|.|+.+.++|++.-
T Consensus       431 Dn~i~~e~v~l~tPt--~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k  494 (659)
T KOG0060|consen  431 DNAIEFEEVSLSTPT--NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTK  494 (659)
T ss_pred             cceEEeeeeeecCCC--CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEe
Confidence            457999999988764  2567899999999999999999999999999999999999999998864

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.69  E-value=3.5e-08  Score=93.67  Aligned_cols=69  Identities=16%  Similarity=0.201  Sum_probs=59.8

Q ss_pred             CCCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEc---ccccc
Q psy7219         209 SGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM---NHSIR  281 (288)
Q Consensus       209 ~~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~---g~~i~  281 (288)
                      ...++..+++++.|..   +..+++.++ .+.+||+++|+|++|+||||++++|+|..+|+.|.+.+.   |.++.
T Consensus       136 ~p~~~~r~~v~~~l~T---Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~  207 (450)
T PRK06002        136 APPAMTRARVETGLRT---GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVR  207 (450)
T ss_pred             CCCCeEeecceEEcCC---CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHH
Confidence            3457889999999964   467899886 999999999999999999999999999999999998885   56654

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.67  E-value=2.2e-08  Score=88.58  Aligned_cols=52  Identities=23%  Similarity=0.403  Sum_probs=46.5

Q ss_pred             eeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchh
Q psy7219         233 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM  284 (288)
Q Consensus       233 ~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~  284 (288)
                      =+++|+.+..-+.+|-|++||||||++||++|+.+|+.|.|.+||..+.+.-
T Consensus        15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~   66 (352)
T COG4148          15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAE   66 (352)
T ss_pred             EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeeccc
Confidence            3578888887899999999999999999999999999999999998765543

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=98.64  E-value=3.2e-08  Score=82.08  Aligned_cols=50  Identities=30%  Similarity=0.448  Sum_probs=45.1

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      -+-.+|..+..||+.=++|||||||||++--++|+. |-+|+|.++|.++.
T Consensus        14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~   63 (248)
T COG4138          14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLE   63 (248)
T ss_pred             cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchh
Confidence            345588999999999999999999999999999987 56999999999975

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.62  E-value=2.5e-08  Score=87.81  Aligned_cols=41  Identities=22%  Similarity=0.468  Sum_probs=32.6

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      +.++|. |.|.    ++.++++++     |++.+|+|||||||||++++|.
T Consensus         4 i~~~nf-ksy~----~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~   44 (243)
T cd03272           4 VIIQGF-KSYK----DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIR   44 (243)
T ss_pred             EEEeCc-cCcc----cCcccccCC-----CCcEEEECCCCCCHHHHHHHHH
Confidence            444443 5563    356888876     8999999999999999999998

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=98.59  E-value=5.2e-08  Score=90.37  Aligned_cols=48  Identities=31%  Similarity=0.608  Sum_probs=43.5

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCC--------CCCCCceEEEc
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA--------IKPTSGNAYVM  276 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~--------~~pt~G~i~i~  276 (288)
                      ..+++|+||.|++||..+++|++||||||+++|+.|.        ++|++|.+.+-
T Consensus       396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp  451 (593)
T COG2401         396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVP  451 (593)
T ss_pred             eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecc
Confidence            4689999999999999999999999999999999974        68999988763

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.59  E-value=2.5e-08  Score=84.57  Aligned_cols=46  Identities=22%  Similarity=0.236  Sum_probs=41.2

Q ss_pred             eeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219         233 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       233 ~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~  278 (288)
                      +=+.+.+++|+.+++.|+|||||||+++.|+|+.+|+.|.+.+.+.
T Consensus        16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~   61 (186)
T cd01130          16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDT   61 (186)
T ss_pred             HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCc
Confidence            3355678899999999999999999999999999999999998764

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=98.58  E-value=8.2e-08  Score=93.73  Aligned_cols=64  Identities=23%  Similarity=0.314  Sum_probs=57.6

Q ss_pred             CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEc
Q psy7219         210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM  276 (288)
Q Consensus       210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~  276 (288)
                      +..+.++|++..-+.   +.+.+++++++|++||..-|.|+|||||||++|.|+|+.|--+|+|..-
T Consensus       390 ~~~i~~~nl~l~~p~---~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P  453 (604)
T COG4178         390 DHGITLENLSLRTPD---GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP  453 (604)
T ss_pred             cceeEEeeeeEECCC---CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC
Confidence            457999999988754   4589999999999999999999999999999999999999999987664

>KOG0927|consensus

Probab=98.57  E-value=1.1e-07  Score=90.73  Aligned_cols=61  Identities=21%  Similarity=0.446  Sum_probs=54.7

Q ss_pred             CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEE
Q psy7219         210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY  274 (288)
Q Consensus       210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~  274 (288)
                      +.-+.++++++.|.+    +..++|.+|.+.+||..||+|+||+||||.++.++|-+.|..-++-
T Consensus        73 s~dvk~~sls~s~~g----~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d  133 (614)
T KOG0927|consen   73 SRDVKIESLSLSFHG----VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHID  133 (614)
T ss_pred             cccceeeeeeeccCC----ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccc
Confidence            346899999999964    7899999999999999999999999999999999999999776543

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.55  E-value=4.7e-08  Score=84.71  Aligned_cols=41  Identities=22%  Similarity=0.404  Sum_probs=34.0

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      +.++|.. .|.    ++.+++++++     |++|++|||||||||++++|+
T Consensus         6 l~l~nfk-~~~----~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~   46 (212)
T cd03274           6 LVLENFK-SYA----GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML   46 (212)
T ss_pred             EEEECcc-cCC----CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH
Confidence            5566654 664    3568998887     899999999999999999998

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.55  E-value=5.6e-08  Score=92.20  Aligned_cols=53  Identities=21%  Similarity=0.340  Sum_probs=44.2

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc---eEEEcccccc
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG---NAYVMNHSIR  281 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G---~i~i~g~~i~  281 (288)
                      +..|++++ +.+.+||++||+|+||+||||++++|+|..+++.+   .+-.+|.++.
T Consensus       142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~  197 (434)
T PRK07196        142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVK  197 (434)
T ss_pred             ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHH
Confidence            45799999 99999999999999999999999999999998863   3333444443

>KOG0066|consensus

Probab=98.51  E-value=8.9e-08  Score=89.36  Aligned_cols=61  Identities=30%  Similarity=0.556  Sum_probs=56.3

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEE
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY  274 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~  274 (288)
                      .++-+++++..|++   .++.+++++|+|.--..++|+||||.||||++++|+|.+.|+.|+.+
T Consensus       585 PvLGlH~VtFgy~g---qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~R  645 (807)
T KOG0066|consen  585 PVLGLHDVTFGYPG---QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELR  645 (807)
T ss_pred             CeeecccccccCCC---CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhh
Confidence            46789999999975   57899999999999999999999999999999999999999999764

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.51  E-value=4.2e-07  Score=85.99  Aligned_cols=67  Identities=30%  Similarity=0.451  Sum_probs=60.9

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  280 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i  280 (288)
                      .++++++|+..-+   .+..+++++||+|++||++||.|..|-|.+-++..|+|+.+|.+|+|.++|.++
T Consensus       256 ~vL~V~~L~v~~~---~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v  322 (501)
T COG3845         256 VVLEVEDLSVKDR---RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDV  322 (501)
T ss_pred             eEEEEeeeEeecC---CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEec
Confidence            4788999987643   235799999999999999999999999999999999999999999999999997

>PRK08149 ATP synthase SpaL; Validated

Probab=98.50  E-value=1.3e-07  Score=89.50  Aligned_cols=54  Identities=20%  Similarity=0.355  Sum_probs=49.9

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC---ceEEEccccccc
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS---GNAYVMNHSIRD  282 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~---G~i~i~g~~i~~  282 (288)
                      +..+++++ +.+.+||+.+|+|+||+||||++++|++...++.   |.|-.+|.++.+
T Consensus       138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e  194 (428)
T PRK08149        138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTE  194 (428)
T ss_pred             CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHH
Confidence            35799999 9999999999999999999999999999999987   889999988764

>KOG0064|consensus

Probab=98.46  E-value=3.1e-07  Score=87.46  Aligned_cols=61  Identities=21%  Similarity=0.359  Sum_probs=52.6

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV  275 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i  275 (288)
                      .+.++|+-..-+.   ....|..++|+|++|--.-|+||||||||++|++|.|+.|...|..++
T Consensus       481 gI~lenIpvItP~---~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~  541 (728)
T KOG0064|consen  481 GIILENIPVITPA---GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI  541 (728)
T ss_pred             ceEEecCceeccC---cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec
Confidence            3667777666553   356899999999999999999999999999999999999998887765

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=98.44  E-value=2.7e-07  Score=79.08  Aligned_cols=44  Identities=27%  Similarity=0.416  Sum_probs=37.4

Q ss_pred             ceeeeEEEEeCCC-EEEEEcCCCCChHHHHHHHh--------CCCCCCCceEE
Q psy7219         231 AVNQISFGVGRGE-CFGLLGLNGAGKTTTFKMLT--------GAIKPTSGNAY  274 (288)
Q Consensus       231 av~~is~~v~~Ge-~~gllG~NGaGKTT~~~~l~--------G~~~pt~G~i~  274 (288)
                      .+.++|+.+.+|+ +++|.||||+||||++|++.        |...|....+.
T Consensus        16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~   68 (200)
T cd03280          16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSS   68 (200)
T ss_pred             ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccccc
Confidence            4557999999996 79999999999999999999        87777665443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=98.44  E-value=2e-07  Score=80.28  Aligned_cols=37  Identities=35%  Similarity=0.420  Sum_probs=32.0

Q ss_pred             EEEeCCCEEEEEcCCCCChHHHHHHH----hCCCCCCCceEE
Q psy7219         237 FGVGRGECFGLLGLNGAGKTTTFKML----TGAIKPTSGNAY  274 (288)
Q Consensus       237 ~~v~~Ge~~gllG~NGaGKTT~~~~l----~G~~~pt~G~i~  274 (288)
                      +.+.+| +++|+|+|||||||+++.|    .|..+|++|.+.
T Consensus        18 l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~   58 (204)
T cd03240          18 IEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGA   58 (204)
T ss_pred             EecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCccccccc
Confidence            445566 9999999999999999999    599999888765

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.44  E-value=2.3e-07  Score=88.47  Aligned_cols=51  Identities=20%  Similarity=0.388  Sum_probs=46.7

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS  279 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~  279 (288)
                      +..+++++ +.+.+||+.+|+|+||+||||++++|+|..+|+.|.+.+.|.+
T Consensus       145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Ger  195 (438)
T PRK07721        145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGER  195 (438)
T ss_pred             chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecC
Confidence            35699999 9999999999999999999999999999999999999985443

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.42  E-value=1.5e-07  Score=88.22  Aligned_cols=51  Identities=41%  Similarity=0.682  Sum_probs=40.9

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEE-----EeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCce
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFG-----VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN  272 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~-----v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~  272 (288)
                      .+...++.|.|+          +..+.     ++.||++|++||||-||||..|+|+|.++|++|+
T Consensus       342 lv~y~~~~k~~g----------~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~  397 (591)
T COG1245         342 LVEYPDLKKTYG----------DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS  397 (591)
T ss_pred             eeecchheeecC----------ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC
Confidence            344556666663          34444     5678999999999999999999999999999996

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.42  E-value=1.6e-07  Score=80.58  Aligned_cols=36  Identities=22%  Similarity=0.275  Sum_probs=31.2

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +.+.+|++++.  ||+++|+||||+||||++|+|.|..
T Consensus        14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHH
Confidence            45778887776  6999999999999999999998755

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.41  E-value=3.3e-07  Score=86.94  Aligned_cols=64  Identities=20%  Similarity=0.328  Sum_probs=55.0

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~  278 (288)
                      .++..+.+++.+..   +..+++++ +.+.+||.++|+|+||+||||++++|+|..+++.|.+...|.
T Consensus       128 ~~~~r~~v~~~l~t---Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGe  191 (433)
T PRK07594        128 PAMVRQPITQPLMT---GIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE  191 (433)
T ss_pred             CceeccCHhheeCC---Cceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECC
Confidence            45677777777753   46799999 999999999999999999999999999999999987776554

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.40  E-value=4.1e-07  Score=83.46  Aligned_cols=50  Identities=20%  Similarity=0.416  Sum_probs=45.5

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~  278 (288)
                      +..+++++ +.+.+||+.+|+|+||+||||++++|+|...|+.|.+..-|.
T Consensus        56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGe  105 (326)
T cd01136          56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGE  105 (326)
T ss_pred             CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEec
Confidence            45699999 999999999999999999999999999999999988777553

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.39  E-value=3.6e-07  Score=81.97  Aligned_cols=39  Identities=13%  Similarity=0.074  Sum_probs=37.3

Q ss_pred             CEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         243 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       243 e~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ..++++|+|||||||++++|+|..+|++|++.++|.++.
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~  150 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVG  150 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEee
Confidence            678999999999999999999999999999999999985

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=98.36  E-value=3.6e-07  Score=79.13  Aligned_cols=55  Identities=24%  Similarity=0.204  Sum_probs=39.4

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEe-CCCEEEEEcCCCCChHHHHHHHhC-CCCCCCceEE
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVG-RGECFGLLGLNGAGKTTTFKMLTG-AIKPTSGNAY  274 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~-~Ge~~gllG~NGaGKTT~~~~l~G-~~~pt~G~i~  274 (288)
                      .++++|.. .|..       -++++|... +||+++|+|+|||||||++++|++ ++.+..+...
T Consensus         5 ~i~l~nf~-~y~~-------~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~   61 (213)
T cd03279           5 KLELKNFG-PFRE-------EQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGR   61 (213)
T ss_pred             EEEEECCc-CcCC-------ceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCcccccc
Confidence            36677776 5532       156777654 599999999999999999999995 4444444443

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.29  E-value=1e-06  Score=83.62  Aligned_cols=65  Identities=14%  Similarity=0.336  Sum_probs=54.8

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS  279 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~  279 (288)
                      .++..+.+.+.|..   +..++|++ +.+.+||..+|+|+||+||||++++|+|..+|+.|.+...|..
T Consensus       129 ~~~~r~~i~~~l~T---GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGer  193 (432)
T PRK06793        129 HAFEREEITDVFET---GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGER  193 (432)
T ss_pred             CchheechhhccCC---CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCC
Confidence            35666777777753   35688885 9999999999999999999999999999999999998876654

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=98.26  E-value=8e-07  Score=84.56  Aligned_cols=48  Identities=19%  Similarity=0.372  Sum_probs=44.7

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEc
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM  276 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~  276 (288)
                      +..+++++ +.+.+||+.+|+|+||+||||++++|+|..+|+.|.+...
T Consensus       132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~i  179 (422)
T TIGR02546       132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALI  179 (422)
T ss_pred             Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEE
Confidence            35699999 9999999999999999999999999999999999988773

>PRK09099 type III secretion system ATPase; Provisional

Probab=98.26  E-value=1.2e-06  Score=83.41  Aligned_cols=50  Identities=18%  Similarity=0.351  Sum_probs=46.4

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~  278 (288)
                      +..+++++ +.+.+||+.+|+|+||+||||++++++|..+++.|.+...|.
T Consensus       150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGe  199 (441)
T PRK09099        150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGE  199 (441)
T ss_pred             Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEcc
Confidence            45699999 999999999999999999999999999999999998888774

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=98.26  E-value=7.2e-07  Score=84.94  Aligned_cols=53  Identities=25%  Similarity=0.402  Sum_probs=44.1

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC---ceEEEcccccc
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS---GNAYVMNHSIR  281 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~---G~i~i~g~~i~  281 (288)
                      +..|+|++ +.+.+||+.+|+|+||+||||++++|+|..+|+-   |.+-..|.+++
T Consensus       155 Gi~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~dv~V~g~Ig~rg~ev~  210 (451)
T PRK05688        155 GIRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREVK  210 (451)
T ss_pred             ceeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEeCcCcHhHH
Confidence            46799999 9999999999999999999999999999988763   44444554443

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=98.25  E-value=9.4e-07  Score=76.13  Aligned_cols=36  Identities=25%  Similarity=0.267  Sum_probs=34.0

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      ++.+.+|+++++++||.++|.||||+||||++|+++
T Consensus        15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~   50 (204)
T cd03282          15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIA   50 (204)
T ss_pred             CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHH
Confidence            356999999999999999999999999999999998

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=98.25  E-value=9.1e-07  Score=84.11  Aligned_cols=54  Identities=26%  Similarity=0.425  Sum_probs=48.2

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC---ceEEEccccccch
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS---GNAYVMNHSIRDS  283 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~---G~i~i~g~~i~~~  283 (288)
                      ..|+|.+ +.+.+||+++|+|+||+||||++++|+|..+|+.   |.|..+|.++.+-
T Consensus       163 iraID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~  219 (455)
T PRK07960        163 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDF  219 (455)
T ss_pred             ceeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHH
Confidence            4577666 9999999999999999999999999999999986   8999999988653

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.24  E-value=1.1e-06  Score=85.05  Aligned_cols=62  Identities=18%  Similarity=0.254  Sum_probs=54.9

Q ss_pred             EEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219         215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  280 (288)
Q Consensus       215 ~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i  280 (288)
                      ..++++.|+    .+.+++++++.+..|+.++++|+||+||||+++.|.|+.+|.+|+..+++..|
T Consensus       187 ~~d~~~v~G----q~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i  248 (506)
T PRK09862        187 QHDLSDVIG----QEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI  248 (506)
T ss_pred             ccCeEEEEC----cHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence            347777774    35699999999999999999999999999999999999999999998887665

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=98.23  E-value=1.1e-06  Score=83.21  Aligned_cols=51  Identities=18%  Similarity=0.285  Sum_probs=45.5

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS  279 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~  279 (288)
                      +..+++ .++.+.+||+++|+|+||+||||++++|+|..+|+.|.+.+.|..
T Consensus       127 Gi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer  177 (418)
T TIGR03498       127 GVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGER  177 (418)
T ss_pred             ccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeee
Confidence            345675 699999999999999999999999999999999999988877654

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>KOG0062|consensus

Probab=98.23  E-value=1.1e-06  Score=83.52  Aligned_cols=49  Identities=27%  Similarity=0.508  Sum_probs=44.7

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG  264 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G  264 (288)
                      -+...+....|+    ++..+++-++.+.+|...||+|+||+||||++|+|+.
T Consensus        80 Di~~~~fdLa~G----~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~  128 (582)
T KOG0062|consen   80 DIHIDNFDLAYG----GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN  128 (582)
T ss_pred             ceeeeeeeeeec----chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence            477778888885    5789999999999999999999999999999999987

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=98.22  E-value=9.2e-07  Score=77.13  Aligned_cols=48  Identities=21%  Similarity=0.235  Sum_probs=42.7

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC-CCCCCCceEEEc
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG-AIKPTSGNAYVM  276 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G-~~~pt~G~i~i~  276 (288)
                      +.+.+|+++++.+|++.+|.|+||+||||++|++++ ...+..|....+
T Consensus        18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a   66 (222)
T cd03287          18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA   66 (222)
T ss_pred             CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc
Confidence            458899999999999999999999999999999999 778888865444

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=98.22  E-value=1.8e-06  Score=81.76  Aligned_cols=52  Identities=19%  Similarity=0.364  Sum_probs=47.3

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  280 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i  280 (288)
                      +..+++++ +.+.+||+.+|+|+||+||||++++|++..+++.|.+...|..-
T Consensus       124 Gi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~  175 (413)
T TIGR03497       124 GIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERG  175 (413)
T ss_pred             cceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccch
Confidence            35699999 99999999999999999999999999999999999888777554

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.19  E-value=4.8e-07  Score=86.99  Aligned_cols=43  Identities=33%  Similarity=0.464  Sum_probs=37.5

Q ss_pred             cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCce
Q psy7219         230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN  272 (288)
Q Consensus       230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~  272 (288)
                      .++++.+..+.+|++++++||||+|||||+..|++.+....|.
T Consensus       244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~  286 (484)
T PRK06995        244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA  286 (484)
T ss_pred             hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC
Confidence            3566677778899999999999999999999999998877764

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.18  E-value=1.7e-06  Score=82.68  Aligned_cols=50  Identities=18%  Similarity=0.403  Sum_probs=44.6

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~  278 (288)
                      +..+++++ +.+.+||+.+|+|+||+||||++++|+|..+++.|.+...|.
T Consensus       150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~  199 (440)
T TIGR01026       150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGE  199 (440)
T ss_pred             eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEee
Confidence            35699999 999999999999999999999999999999999887666443

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=98.17  E-value=2.6e-06  Score=73.05  Aligned_cols=30  Identities=23%  Similarity=0.376  Sum_probs=26.6

Q ss_pred             eeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219         234 QISFGVGRGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       234 ~is~~v~~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      -.++.+.+||+++|.|+||+||||++|++.
T Consensus        21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~   50 (202)
T cd03243          21 PNDINLGSGRLLLITGPNMGGKSTYLRSIG   50 (202)
T ss_pred             eeeEEEcCCeEEEEECCCCCccHHHHHHHH
Confidence            345566689999999999999999999999

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=98.16  E-value=2.7e-06  Score=80.57  Aligned_cols=63  Identities=21%  Similarity=0.271  Sum_probs=50.5

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~  278 (288)
                      +..-+.+++.|..   +..+++.+ +.+.+||+++|+|+||+||||++++|++..+|+.|.+...|.
T Consensus       111 ~~~R~~~~~~~~t---Gi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGe  173 (411)
T TIGR03496       111 PLKRAPIDEPLDV---GVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGE  173 (411)
T ss_pred             HHhccCcceEeee---eEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEec
Confidence            3444455555642   45689999 999999999999999999999999999999998777655444

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK05922 type III secretion system ATPase; Validated

Probab=98.16  E-value=2.9e-06  Score=80.52  Aligned_cols=49  Identities=18%  Similarity=0.398  Sum_probs=43.6

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~  278 (288)
                      ..++|.+ +.+.+||.++|+|+||+||||++++|+|..+++.|.+..-|.
T Consensus       145 Ir~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGe  193 (434)
T PRK05922        145 IKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGE  193 (434)
T ss_pred             ceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCC
Confidence            4578776 999999999999999999999999999999999998865444

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.15  E-value=1.4e-06  Score=76.30  Aligned_cols=39  Identities=23%  Similarity=0.308  Sum_probs=33.5

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCCCCCCce----EEEcccc
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN----AYVMNHS  279 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~----i~i~g~~  279 (288)
                      +..++||.|+|||||||+.+.|++..++++|.    +..++..
T Consensus        32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~   74 (229)
T PRK09270         32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH   74 (229)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence            45699999999999999999999999999998    4445443

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.14  E-value=4.8e-06  Score=79.94  Aligned_cols=62  Identities=37%  Similarity=0.519  Sum_probs=54.9

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+++++++..        ..++|+||++++||++||-|-=|||+|-+++.|-|..++.+|+|.++|.++.
T Consensus       263 ~l~v~~l~~~--------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~  324 (500)
T COG1129         263 VLEVRNLSGG--------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVR  324 (500)
T ss_pred             EEEEecCCCC--------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEcc
Confidence            4667776431        2689999999999999999999999999999999999999999999999764

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.12  E-value=3.9e-06  Score=58.02  Aligned_cols=38  Identities=18%  Similarity=0.331  Sum_probs=28.8

Q ss_pred             eeeEEEEeC-CCEEEEEcCCCCChHHHHHHHhCCCCCCC
Q psy7219         233 NQISFGVGR-GECFGLLGLNGAGKTTTFKMLTGAIKPTS  270 (288)
Q Consensus       233 ~~is~~v~~-Ge~~gllG~NGaGKTT~~~~l~G~~~pt~  270 (288)
                      ++-.+.+.+ |+.+.|.|+|||||||++..+.=..-+..
T Consensus        13 ~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~   51 (62)
T PF13555_consen   13 DGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT   51 (62)
T ss_pred             CCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence            345666664 57999999999999999988875554433

>PRK06315 type III secretion system ATPase; Provisional

Probab=98.09  E-value=2.5e-06  Score=81.25  Aligned_cols=52  Identities=17%  Similarity=0.381  Sum_probs=42.9

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC-ceEEE---cccccc
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS-GNAYV---MNHSIR  281 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~-G~i~i---~g~~i~  281 (288)
                      ..|+|++ +.+.+||+++|+|+||+||||++++|+|..++++ |.+..   .|.++.
T Consensus       152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~  207 (442)
T PRK06315        152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVR  207 (442)
T ss_pred             EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHH
Confidence            4689998 9999999999999999999999999999885544 55555   445553

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.09  E-value=1.9e-06  Score=77.97  Aligned_cols=36  Identities=19%  Similarity=0.339  Sum_probs=31.4

Q ss_pred             CEEEEEcCCCCChHHHHHHHhCCCC--CCCceEEEccc
Q psy7219         243 ECFGLLGLNGAGKTTTFKMLTGAIK--PTSGNAYVMNH  278 (288)
Q Consensus       243 e~~gllG~NGaGKTT~~~~l~G~~~--pt~G~i~i~g~  278 (288)
                      .++||.|+|||||||+.++|.++..  |++|++.+-+.
T Consensus        63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~  100 (290)
T TIGR00554        63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITT  100 (290)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEec
Confidence            4899999999999999999999998  78898776433

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.09  E-value=4.9e-06  Score=71.12  Aligned_cols=56  Identities=30%  Similarity=0.443  Sum_probs=48.0

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP  268 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p  268 (288)
                      +-++|++-.+..+.+...||+++|++..+||+-||+|.+|+|||-..|.++|..+-
T Consensus         4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kd   59 (330)
T COG4170           4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKD   59 (330)
T ss_pred             ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhccccc
Confidence            44667777776555667799999999999999999999999999999999998763

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=98.06  E-value=3.1e-06  Score=80.45  Aligned_cols=52  Identities=17%  Similarity=0.343  Sum_probs=46.8

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ..+++++ +.+.+||+.+|+|+||+||||++++|++...++.+.+...|..-+
T Consensus       145 i~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergr  196 (434)
T PRK08472        145 VKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGR  196 (434)
T ss_pred             hHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccch
Confidence            4599999 999999999999999999999999999999888888887776543

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.05  E-value=2.1e-06  Score=86.43  Aligned_cols=49  Identities=22%  Similarity=0.329  Sum_probs=40.5

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc--eEEEcccc
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG--NAYVMNHS  279 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G--~i~i~g~~  279 (288)
                      ++++.++.+++|++++++||||+|||||+..|++.+....|  +|.+-..|
T Consensus       174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D  224 (767)
T PRK14723        174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD  224 (767)
T ss_pred             hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc
Confidence            56667777888999999999999999999999999977776  56554444

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.05  E-value=2.4e-06  Score=78.44  Aligned_cols=42  Identities=24%  Similarity=0.263  Sum_probs=38.5

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ++|++++++||||+|||||+..|++...+..|+|.+.+.|..
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~  153 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF  153 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence            578999999999999999999999999999899999887763

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=98.01  E-value=3.7e-06  Score=76.95  Aligned_cols=42  Identities=21%  Similarity=0.260  Sum_probs=39.2

Q ss_pred             eEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEc
Q psy7219         235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM  276 (288)
Q Consensus       235 is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~  276 (288)
                      +++.+++|+.+++.|++||||||+++.|+++.++..|.+.+.
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie  178 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE  178 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc
Confidence            567889999999999999999999999999999999988885

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.99  E-value=3.8e-06  Score=74.50  Aligned_cols=37  Identities=22%  Similarity=0.270  Sum_probs=32.4

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhCCCCCC-CceEEEccc
Q psy7219         242 GECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNH  278 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l~G~~~pt-~G~i~i~g~  278 (288)
                      ..+.+|+|+|||||||++++|.+...++ .|++...|.
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~   62 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNL   62 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCH
Confidence            6699999999999999999999999887 457777665

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=97.99  E-value=7.2e-06  Score=77.83  Aligned_cols=40  Identities=30%  Similarity=0.554  Sum_probs=36.6

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT  269 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt  269 (288)
                      ..+++.+ +.+.+||+.+|+|+||+||||++++|++...++
T Consensus       150 i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d  189 (444)
T PRK08972        150 VRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD  189 (444)
T ss_pred             ceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence            4578888 999999999999999999999999999988774

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.99  E-value=4.9e-06  Score=75.41  Aligned_cols=51  Identities=18%  Similarity=0.258  Sum_probs=39.4

Q ss_pred             eeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE---ccccccch
Q psy7219         232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV---MNHSIRDS  283 (288)
Q Consensus       232 v~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i---~g~~i~~~  283 (288)
                      ++++...+. ++.++++|+||+||||+++.|.|...++.|++..   .|...+++
T Consensus       152 i~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~  205 (287)
T cd01854         152 LDELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTH  205 (287)
T ss_pred             HHHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccce
Confidence            334444444 5899999999999999999999999999999876   44444433

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.98  E-value=1e-05  Score=72.32  Aligned_cols=34  Identities=18%  Similarity=0.323  Sum_probs=31.5

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHH
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML  262 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l  262 (288)
                      ...++|++++++.|+.+++.|++||||||+++.+
T Consensus         8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~   41 (261)
T cd03271           8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDT   41 (261)
T ss_pred             hhcCCCceeeccCCcEEEEECCCCCchHHHHHHH
Confidence            4589999999999999999999999999999855

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=97.98  E-value=5.5e-06  Score=78.00  Aligned_cols=34  Identities=44%  Similarity=0.820  Sum_probs=31.7

Q ss_pred             EeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCce
Q psy7219         239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN  272 (288)
Q Consensus       239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~  272 (288)
                      .++|+++||+|+||-||||.+|+|+|+..|.=|+
T Consensus        97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~  130 (591)
T COG1245          97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGR  130 (591)
T ss_pred             CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCC
Confidence            4589999999999999999999999999998875

>PLN02796 D-glycerate 3-kinase

Probab=97.98  E-value=2e-06  Score=79.14  Aligned_cols=51  Identities=20%  Similarity=0.232  Sum_probs=40.8

Q ss_pred             ceeeeEEEE---eCCCE-----EEEEcCCCCChHHHHHHHhCCCCCC---CceEEEcccccc
Q psy7219         231 AVNQISFGV---GRGEC-----FGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIR  281 (288)
Q Consensus       231 av~~is~~v---~~Ge~-----~gllG~NGaGKTT~~~~l~G~~~pt---~G~i~i~g~~i~  281 (288)
                      ++++++..+   ++|+.     +||.|++||||||+.+.|.+..++.   .|.+.+++..+.
T Consensus        81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt  142 (347)
T PLN02796         81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLT  142 (347)
T ss_pred             HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccc
Confidence            455555554   45555     9999999999999999999999875   588899998764

>cd00879 Sar1 Sar1 subfamily

Probab=97.96  E-value=5.3e-06  Score=69.83  Aligned_cols=48  Identities=29%  Similarity=0.406  Sum_probs=39.1

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC--------CCCCCCceEEEcccc
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--------AIKPTSGNAYVMNHS  279 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G--------~~~pt~G~i~i~g~~  279 (288)
                      +++++++..+++++ +++|++|+||||+++.+++        ...|+.+++.+++.+
T Consensus         9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~   64 (190)
T cd00879           9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIK   64 (190)
T ss_pred             HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEE
Confidence            67888888777777 9999999999999999998        345566777777654

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=97.93  E-value=7.2e-06  Score=71.26  Aligned_cols=35  Identities=23%  Similarity=0.218  Sum_probs=31.7

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG  264 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G  264 (288)
                      +.+.+|++++.++ ++++|.||||+||||++|++.+
T Consensus        18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~   52 (216)
T cd03284          18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVAL   52 (216)
T ss_pred             ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHH
Confidence            4588999999987 9999999999999999999863

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>TIGR00767 rho transcription termination factor Rho

Probab=97.92  E-value=2.4e-05  Score=73.47  Aligned_cols=55  Identities=20%  Similarity=0.318  Sum_probs=48.7

Q ss_pred             eEEEEeeeEEecccccccccee-----------eeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVN-----------QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT  269 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~-----------~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt  269 (288)
                      .+..++|+..|++   ++.+++           |+.+.|.+||..+|+|+.|+||||++++|...+...
T Consensus       130 ri~Fe~LTf~YP~---er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n  195 (415)
T TIGR00767       130 RVLFENLTPLYPN---ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRN  195 (415)
T ss_pred             CeEEEEeeecCCC---ccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence            5889999999975   346786           999999999999999999999999999999987654

Members of this family differ in the specificity of RNA binding.

>PRK01889 GTPase RsgA; Reviewed

Probab=97.90  E-value=1.1e-05  Score=75.39  Aligned_cols=48  Identities=23%  Similarity=0.352  Sum_probs=42.3

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~  278 (288)
                      -++.+.-.+++||+++++|+||+||||+++.|+|..+++.|++..++.
T Consensus       184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~  231 (356)
T PRK01889        184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDS  231 (356)
T ss_pred             cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCC
Confidence            355555567899999999999999999999999999999999998764

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.90  E-value=1.5e-05  Score=85.93  Aligned_cols=48  Identities=27%  Similarity=0.238  Sum_probs=41.6

Q ss_pred             eeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219         232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  280 (288)
Q Consensus       232 v~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i  280 (288)
                      +.+-.|.+.+| +++|+|+|||||||++++|.+...|..|.+.+++.+.
T Consensus        18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~~   65 (1486)
T PRK04863         18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE   65 (1486)
T ss_pred             ccceEEEecCC-eEEEECCCCCCHHHHHHHHHccccCCCCeEEECCccc
Confidence            34457777775 9999999999999999999999999999999887653

>cd04155 Arl3 Arl3 subfamily

Probab=97.88  E-value=1.7e-05  Score=65.53  Aligned_cols=37  Identities=38%  Similarity=0.535  Sum_probs=31.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC----CCCCCc----eEEEccccc
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA----IKPTSG----NAYVMNHSI  280 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~----~~pt~G----~i~i~g~~i  280 (288)
                      .++++|+||+||||+++.++|.    ..||.|    .+..+|.++
T Consensus        16 ~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~   60 (173)
T cd04155          16 RILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKL   60 (173)
T ss_pred             EEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEE
Confidence            5889999999999999999997    668889    777776554

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK06820 type III secretion system ATPase; Validated

Probab=97.87  E-value=2e-05  Score=75.04  Aligned_cols=45  Identities=24%  Similarity=0.385  Sum_probs=41.1

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceE
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA  273 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i  273 (288)
                      +..++|++ +.+.+||..+|+|+||+||||++++|++...|+.+.+
T Consensus       150 Gi~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~V~  194 (440)
T PRK06820        150 GIRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVL  194 (440)
T ss_pred             CCceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCCCCEEEE
Confidence            46799999 9999999999999999999999999999998887543

>PRK06936 type III secretion system ATPase; Provisional

Probab=97.87  E-value=1.8e-05  Score=75.30  Aligned_cols=42  Identities=19%  Similarity=0.401  Sum_probs=38.9

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS  270 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~  270 (288)
                      +..+++++ +.+.+||+.+|+|+||+||||++++|++...++-
T Consensus       149 Gi~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~dv  190 (439)
T PRK06936        149 GVRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV  190 (439)
T ss_pred             Ccceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCCE
Confidence            35699999 9999999999999999999999999999998864

>PRK00098 GTPase RsgA; Reviewed

Probab=97.84  E-value=1.8e-05  Score=72.04  Aligned_cols=35  Identities=26%  Similarity=0.388  Sum_probs=33.3

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV  275 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i  275 (288)
                      +|++++++|+||+||||+++.|.|...+..|++..
T Consensus       163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~  197 (298)
T PRK00098        163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISE  197 (298)
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence            68999999999999999999999999999999886

>TIGR00368 Mg chelatase-related protein

Probab=97.84  E-value=1.1e-05  Score=78.28  Aligned_cols=54  Identities=22%  Similarity=0.332  Sum_probs=49.4

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ...+++++++.+..|+.+.++|+||+||||+.+.+.|+.+|.+|++.+++..+.
T Consensus       197 q~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~  250 (499)
T TIGR00368       197 QQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIW  250 (499)
T ss_pred             cHHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccc
Confidence            456899999999999999999999999999999999999999999988876653

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.83  E-value=1e-05  Score=76.80  Aligned_cols=42  Identities=26%  Similarity=0.340  Sum_probs=31.7

Q ss_pred             EeCCCEEEEEcCCCCChHHHHHHHhCCC----CC-CCceEEEccccc
Q psy7219         239 VGRGECFGLLGLNGAGKTTTFKMLTGAI----KP-TSGNAYVMNHSI  280 (288)
Q Consensus       239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~----~p-t~G~i~i~g~~i  280 (288)
                      +.+|++++++|+||+|||||++.|+|..    .+ ..|-+..+++.+
T Consensus       188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ri  234 (420)
T PRK14721        188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRI  234 (420)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcch
Confidence            4689999999999999999999999863    22 334555555443

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=97.83  E-value=2.1e-05  Score=68.62  Aligned_cols=35  Identities=20%  Similarity=0.298  Sum_probs=32.4

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      +.+.+|++++.+++++.+|.||||+||||+++++.
T Consensus        17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~   51 (222)
T cd03285          17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG   51 (222)
T ss_pred             CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence            46899999999999999999999999999999963

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=97.83  E-value=1.9e-05  Score=81.70  Aligned_cols=30  Identities=23%  Similarity=0.444  Sum_probs=29.3

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHH
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFK  260 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~  260 (288)
                      .++|++++|++||++|+.|+||||||||++
T Consensus       622 ~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~  651 (924)
T TIGR00630       622 NLKNITVSIPLGLFTCITGVSGSGKSTLIN  651 (924)
T ss_pred             CcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence            699999999999999999999999999997

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.81  E-value=1.3e-05  Score=70.94  Aligned_cols=34  Identities=18%  Similarity=0.272  Sum_probs=29.6

Q ss_pred             CEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEc
Q psy7219         243 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM  276 (288)
Q Consensus       243 e~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~  276 (288)
                      ...+|+|+|||||||++++|.+...+.+|+....
T Consensus        23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~   56 (247)
T cd03275          23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSK   56 (247)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCccccccc
Confidence            3899999999999999999999988877776544

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=97.80  E-value=3e-05  Score=84.39  Aligned_cols=39  Identities=13%  Similarity=0.335  Sum_probs=34.9

Q ss_pred             cceeeeEEEEeCCCEEEEEcCCCCChHHHHH---------HHhCCCCC
Q psy7219         230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFK---------MLTGAIKP  268 (288)
Q Consensus       230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~---------~l~G~~~p  268 (288)
                      ..++++|+.|++||++||.|+|||||||+++         .|.|...+
T Consensus       609 ~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~  656 (1809)
T PRK00635        609 HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCS  656 (1809)
T ss_pred             CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcc
Confidence            3799999999999999999999999999999         77776544

>TIGR00606 rad50 rad50

Probab=97.77  E-value=2.6e-05  Score=84.22  Aligned_cols=41  Identities=39%  Similarity=0.592  Sum_probs=35.2

Q ss_pred             CCEEEEEcCCCCChHHHHHHH----hCCCCCC-CceEEEccccccc
Q psy7219         242 GECFGLLGLNGAGKTTTFKML----TGAIKPT-SGNAYVMNHSIRD  282 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l----~G~~~pt-~G~i~i~g~~i~~  282 (288)
                      ..+++|+|||||||||++.+|    +|..+|. +|.+++.+.++..
T Consensus        28 ~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~   73 (1311)
T TIGR00606        28 SPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQ   73 (1311)
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCc
Confidence            349999999999999999999    6999996 7998888766543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.75  E-value=2.2e-05  Score=67.16  Aligned_cols=43  Identities=23%  Similarity=0.366  Sum_probs=36.3

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhCCCCCC-CceEEEccccccc
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNHSIRD  282 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt-~G~i~i~g~~i~~  282 (288)
                      ++|+++++.|.|||||||+.+.|.+...+. .|.+.++|.++..
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~   65 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH   65 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh
Confidence            468899999999999999999999977654 4689999877654

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=97.72  E-value=3.9e-05  Score=79.64  Aligned_cols=32  Identities=19%  Similarity=0.381  Sum_probs=30.7

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHH
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKML  262 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l  262 (288)
                      .++|+|++|++||++|+.|+|||||||+++.+
T Consensus       624 ~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~  655 (943)
T PRK00349        624 NLKNVDVEIPLGKFTCVTGVSGSGKSTLINET  655 (943)
T ss_pred             CcCceEEEEeCCCEEEEEcCCCCCHHHHHHHH
Confidence            69999999999999999999999999999876

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=97.72  E-value=3.3e-05  Score=84.11  Aligned_cols=54  Identities=15%  Similarity=0.149  Sum_probs=41.4

Q ss_pred             EEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEc
Q psy7219         215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM  276 (288)
Q Consensus       215 ~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~  276 (288)
                      ..++...+.    ..+.++|+++++++||++||.|+|||||||++..+  +++  .|++.+.
T Consensus       938 ~~~i~i~~~----~~~~lk~isl~i~~gei~~itG~nGsGKStL~~~~--L~~--~G~~~~~  991 (1809)
T PRK00635        938 PADITIKNA----YQHNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI--LYA--AGNIAYA  991 (1809)
T ss_pred             cceEEEecc----ccccccceeEEecCCcEEEEECCCCCChhHHHHHH--HHh--hccEeee
Confidence            445555442    23479999999999999999999999999977665  333  7888754

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=97.67  E-value=4.8e-05  Score=66.19  Aligned_cols=37  Identities=24%  Similarity=0.275  Sum_probs=34.1

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      +.+-+|++++.++|++++|.|+||+||||+++++++.
T Consensus        17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~   53 (218)
T cd03286          17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLA   53 (218)
T ss_pred             CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHH
Confidence            4688999999999999999999999999999998854

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.58  E-value=7.5e-05  Score=63.98  Aligned_cols=33  Identities=24%  Similarity=0.346  Sum_probs=27.8

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG  264 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G  264 (288)
                      .+++++++..+| +.+++|+||+||||++..|..
T Consensus        11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~   43 (198)
T cd03276          11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTI   43 (198)
T ss_pred             ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHH
Confidence            456677887776 779999999999999999874

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.58  E-value=5.3e-05  Score=66.43  Aligned_cols=41  Identities=20%  Similarity=0.315  Sum_probs=35.7

Q ss_pred             EEeCCCEEEEEcCCCCChHHH-HHHHhCCCCCCCceEEEccc
Q psy7219         238 GVGRGECFGLLGLNGAGKTTT-FKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~-~~~l~G~~~pt~G~i~i~g~  278 (288)
                      ++++|+++.+.|+||+||||+ .+++.+..++....+++...
T Consensus        20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e   61 (230)
T PRK08533         20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ   61 (230)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence            489999999999999999999 79999987777777888754

>KOG0065|consensus

Probab=97.56  E-value=0.0001  Score=77.42  Aligned_cols=58  Identities=29%  Similarity=0.367  Sum_probs=51.4

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC---CceEEEccccccchhh
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIRDSMD  285 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt---~G~i~i~g~~i~~~~~  285 (288)
                      ....++|+|.-+++||..-+||+.||||||+++.|+|...-.   .|+|..+|++.++.+.
T Consensus       127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~  187 (1391)
T KOG0065|consen  127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP  187 (1391)
T ss_pred             cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc
Confidence            357999999999999999999999999999999999987654   5799999999876554

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.56  E-value=4.3e-05  Score=71.49  Aligned_cols=43  Identities=33%  Similarity=0.421  Sum_probs=35.9

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG  271 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G  271 (288)
                      .+++++.+..+.+|++++++||||+|||||+..|++......|
T Consensus       124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G  166 (374)
T PRK14722        124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFG  166 (374)
T ss_pred             chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence            3467778888999999999999999999999999987543333

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.55  E-value=7.7e-05  Score=67.36  Aligned_cols=41  Identities=20%  Similarity=0.197  Sum_probs=35.4

Q ss_pred             EeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219         239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS  279 (288)
Q Consensus       239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~  279 (288)
                      =+.+.+++|+|++||||||+++.+.+..+...+.+.+.|..
T Consensus       101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~  141 (290)
T PRK10463        101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQ  141 (290)
T ss_pred             hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCc
Confidence            34688999999999999999999999988888888887653

>KOG0062|consensus

Probab=97.49  E-value=0.00011  Score=70.32  Aligned_cols=67  Identities=24%  Similarity=0.263  Sum_probs=58.6

Q ss_pred             CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219         210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~  278 (288)
                      ...+++.++.+.|..+  .-....++++++.--+..+.+|+||+||||++|++.|+..|++|.+.+.+.
T Consensus       360 ~p~l~i~~V~f~y~p~--~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r  426 (582)
T KOG0062|consen  360 PPNLRISYVAFEYTPS--EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPR  426 (582)
T ss_pred             CCeeEEEeeeccCCCc--chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeeccc
Confidence            3468899999888652  126899999999999999999999999999999999999999999887654

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=97.48  E-value=0.00015  Score=64.44  Aligned_cols=38  Identities=24%  Similarity=0.292  Sum_probs=33.3

Q ss_pred             eEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCce
Q psy7219         235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN  272 (288)
Q Consensus       235 is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~  272 (288)
                      .=+.+.+||..+|+|++|+||||+++++.+......++
T Consensus         9 ~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fd   46 (249)
T cd01128           9 LFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPE   46 (249)
T ss_pred             eecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCC
Confidence            33678899999999999999999999999999887543

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK08927 fliI flagellum-specific ATP synthase; Validated

Probab=97.48  E-value=0.00013  Score=69.48  Aligned_cols=40  Identities=20%  Similarity=0.326  Sum_probs=36.1

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS  270 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~  270 (288)
                      .+=|.-+.+.+||+++|+|+||+||||++++|++..+|+.
T Consensus       147 r~ID~l~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~~~d~  186 (442)
T PRK08927        147 RALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNADADV  186 (442)
T ss_pred             EEEeeeeEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCE
Confidence            4456779999999999999999999999999999998864

>PLN02165 adenylate isopentenyltransferase

Probab=97.46  E-value=0.00011  Score=67.53  Aligned_cols=43  Identities=16%  Similarity=0.188  Sum_probs=35.7

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCCC---CCCceE-EEccccccch
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAIK---PTSGNA-YVMNHSIRDS  283 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~---pt~G~i-~i~g~~i~~~  283 (288)
                      +|++++|+|||||||||+...|++...   .+.+++ .+.|.+|.+.
T Consensus        42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTa   88 (334)
T PLN02165         42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTN   88 (334)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccC
Confidence            688999999999999999999999876   567777 4478887543

>TIGR01069 mutS2 MutS2 family protein

Probab=97.45  E-value=4.9e-05  Score=77.60  Aligned_cols=38  Identities=26%  Similarity=0.321  Sum_probs=32.4

Q ss_pred             eeEEEEeCC-CEEEEEcCCCCChHHHHHHHhCC-CCCCCc
Q psy7219         234 QISFGVGRG-ECFGLLGLNGAGKTTTFKMLTGA-IKPTSG  271 (288)
Q Consensus       234 ~is~~v~~G-e~~gllG~NGaGKTT~~~~l~G~-~~pt~G  271 (288)
                      .+++.+.++ +.++|.||||+||||++|+++|. +.+..|
T Consensus       313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G  352 (771)
T TIGR01069       313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG  352 (771)
T ss_pred             eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC
Confidence            378888877 99999999999999999999988 455555

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=97.45  E-value=0.0001  Score=69.45  Aligned_cols=38  Identities=24%  Similarity=0.259  Sum_probs=34.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCCC---CceEEEcccccc
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIR  281 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~pt---~G~i~i~g~~i~  281 (288)
                      ++||.|++||||||+.+.|.++.+++   .|.+.++++.+.
T Consensus       214 IIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt  254 (460)
T PLN03046        214 VIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLT  254 (460)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCC
Confidence            78999999999999999999999877   788999998763

>KOG0063|consensus

Probab=97.45  E-value=0.00024  Score=66.76  Aligned_cols=44  Identities=41%  Similarity=0.670  Sum_probs=39.5

Q ss_pred             cccceeeeEEEEeCCC-----EEEEEcCCCCChHHHHHHHhCCCCCCCc
Q psy7219         228 TKPAVNQISFGVGRGE-----CFGLLGLNGAGKTTTFKMLTGAIKPTSG  271 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge-----~~gllG~NGaGKTT~~~~l~G~~~pt~G  271 (288)
                      .+.-+-+..+.|+.||     ++..+|.||.||||+++|++|..+|+.|
T Consensus       348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~  396 (592)
T KOG0063|consen  348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEG  396 (592)
T ss_pred             ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCcc
Confidence            4557889999999885     7889999999999999999999999998

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=97.43  E-value=0.00013  Score=68.03  Aligned_cols=40  Identities=15%  Similarity=0.217  Sum_probs=31.3

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhCCCCCC--C-ceEEEcccc
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTGAIKPT--S-GNAYVMNHS  279 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt--~-G~i~i~g~~  279 (288)
                      ++|..+.+.||||||||||++.|.+...++  + +.+...+.+
T Consensus       132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edp  174 (358)
T TIGR02524       132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAP  174 (358)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence            489999999999999999999999998543  3 355444333

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.42  E-value=0.00015  Score=59.93  Aligned_cols=34  Identities=29%  Similarity=0.460  Sum_probs=24.8

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEE
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY  274 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~  274 (288)
                      ++++..++|++|+||||+++.|.+......|++.
T Consensus        34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is   67 (161)
T PF03193_consen   34 KGKTSVLLGQSGVGKSSLINALLPEAKQKTGEIS   67 (161)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHTSS----S---
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhhcchhhhhhh
Confidence            4579999999999999999999999776666654

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.40  E-value=7.3e-05  Score=68.19  Aligned_cols=46  Identities=24%  Similarity=0.313  Sum_probs=38.7

Q ss_pred             cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219         230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV  275 (288)
Q Consensus       230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i  275 (288)
                      .++++++....+++.+++.|++|+||||+.+.+.+.......++.+
T Consensus        22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~   67 (300)
T TIGR00750        22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAV   67 (300)
T ss_pred             HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            4788999999999999999999999999999999876554444433

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=97.39  E-value=0.00015  Score=71.14  Aligned_cols=36  Identities=25%  Similarity=0.280  Sum_probs=32.6

Q ss_pred             CEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219         243 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS  279 (288)
Q Consensus       243 e~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~  279 (288)
                      =++||.|+|||||||+.+.|.+.. |..|.+.++|+.
T Consensus        66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~  101 (656)
T PLN02318         66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYN  101 (656)
T ss_pred             EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEccee
Confidence            389999999999999999999997 578999999875

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=97.38  E-value=0.00018  Score=60.59  Aligned_cols=32  Identities=22%  Similarity=0.441  Sum_probs=25.1

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      ..+++.+...+| +..|.|+||+||||++..|.
T Consensus         9 ~~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~   40 (202)
T PF13476_consen    9 SFKDLEIDFSPG-LNVIYGPNGSGKSTILEAIR   40 (202)
T ss_dssp             TEEEEEEE--SE-EEEEEESTTSSHHHHHHHHH
T ss_pred             CCcceEEEcCCC-cEEEECCCCCCHHHHHHHHH
Confidence            446677777776 99999999999999998765

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=97.34  E-value=0.00014  Score=63.10  Aligned_cols=33  Identities=24%  Similarity=0.359  Sum_probs=25.1

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      +=+|++++=..+....|.||||+||||++|.+.
T Consensus        18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~   50 (213)
T cd03281          18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVA   50 (213)
T ss_pred             EcceEEecCCCceEEEEECCCCCChHHHHHHHH
Confidence            445555542223789999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=97.33  E-value=0.00011  Score=62.01  Aligned_cols=45  Identities=24%  Similarity=0.331  Sum_probs=36.6

Q ss_pred             EEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC-ceEEEccccccc
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS-GNAYVMNHSIRD  282 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~-G~i~i~g~~i~~  282 (288)
                      ..++|+++++.|++|+||||+.+.|.+..+... +.+.++|.++++
T Consensus        14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~   59 (184)
T TIGR00455        14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRH   59 (184)
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHh
Confidence            446899999999999999999999999886433 257888877654

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.22  E-value=0.00024  Score=63.78  Aligned_cols=47  Identities=23%  Similarity=0.283  Sum_probs=34.0

Q ss_pred             eeeeEEEEe-------CCCEEEEEcCCCCChHHHHHHHhCCCCC---CCceEEEccc
Q psy7219         232 VNQISFGVG-------RGECFGLLGLNGAGKTTTFKMLTGAIKP---TSGNAYVMNH  278 (288)
Q Consensus       232 v~~is~~v~-------~Ge~~gllG~NGaGKTT~~~~l~G~~~p---t~G~i~i~g~  278 (288)
                      ++++++.+.       +|+.++++|+||+||||++++|++....   ..|-+..+++
T Consensus        58 ~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~  114 (270)
T PRK06731         58 LEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS  114 (270)
T ss_pred             hcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            445555544       6699999999999999999999988643   3344444444

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=97.20  E-value=0.00039  Score=67.66  Aligned_cols=47  Identities=21%  Similarity=0.361  Sum_probs=40.8

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh---CCCCCCCceEEE
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT---GAIKPTSGNAYV  275 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~---G~~~pt~G~i~i  275 (288)
                      +...+||+.+.. +|..++|.|++||||||+.+.|+   |..-.++|.+|=
T Consensus       271 ~~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR  320 (512)
T PRK13477        271 STRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYR  320 (512)
T ss_pred             CeEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceeh
Confidence            356899999987 88999999999999999999999   777777787653

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=97.20  E-value=0.0004  Score=64.46  Aligned_cols=41  Identities=32%  Similarity=0.251  Sum_probs=36.1

Q ss_pred             EEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219         237 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  277 (288)
Q Consensus       237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g  277 (288)
                      ..++.+..+.+.|++||||||+++.|.+..+++.+.+.+..
T Consensus       157 ~~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd  197 (344)
T PRK13851        157 ACVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIED  197 (344)
T ss_pred             HHHHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECC
Confidence            34778889999999999999999999999999888877654

>PRK15494 era GTPase Era; Provisional

Probab=97.14  E-value=0.00033  Score=65.02  Aligned_cols=51  Identities=14%  Similarity=0.180  Sum_probs=42.3

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCC-------EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGE-------CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge-------~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      ...++++..|+.   ...+++++++.++.||       .++++|..|+||||+++.|.|..
T Consensus        19 ~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k   76 (339)
T PRK15494         19 TEALAAAVREDA---STGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK   76 (339)
T ss_pred             cccccccccCCC---CcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence            444555566753   3569999999999999       99999999999999999999874

>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A

Probab=97.12  E-value=0.00011  Score=66.32  Aligned_cols=136  Identities=21%  Similarity=0.294  Sum_probs=0.0

Q ss_pred             EeeehHHHHHHHHHHHHHHHHhCCccccCCCCHHHHHHHHHHHHhhHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHH
Q psy7219           2 YSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSVPSTAFVVLGCFNLFVGLITT   81 (288)
Q Consensus         2 f~~D~~~~~i~~~~~i~i~~~f~~~~f~~~~~~~~~~lll~l~g~s~i~~~Y~~S~~F~~~~~A~~~~~~~~~~~g~~~~   81 (288)
                      ++++++..++.+++++++  +++...+. ..+...+++++++|+++.+++.+++|.+|+++..|......+.++..... 
T Consensus       209 ~l~~~~~~~i~~~i~~~i--~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~-  284 (344)
T PF12698_consen  209 FLAYFLVSLIQSLIIIII--IFGISGIP-FGNFLLLLLLLLLFSLAFISFGFLISSFFKNSSTAISVASIIILLLSFLS-  284 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhhHHHHHHHHHHHH--HhccccCc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-
Confidence            456777777776655543  34421121 22566677889999999999999999999999888765444433111111 


Q ss_pred             HHHHHHhhccCcchhhHHHhhcceeeeeChhhHHHHHHHHHHHHHHHhhhhhcCCCccccccccccchhHHHHHHHHHHH
Q psy7219          82 LTVTVLDNLQDDTLEYVNQYLKVIFLIFPHFCLGEGLMKLANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGA  161 (288)
Q Consensus        82 ~~~~il~~~~~~~~~~~~~~l~~~~~~~P~~~l~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~l~~~~~  161 (288)
                      ...+.        .+..++.++++..++|.+.+.+++.++..           +.         |..++..++++++.++
T Consensus       285 ~~~~~--------~~~~~~~~~~i~~~~P~~~~~~~~~~~~~-----------~~---------~~~~~~~~~~l~~~~~  336 (344)
T PF12698_consen  285 GGFFP--------LSSLPSFLQWISSFLPFYWFIQGLRNIIY-----------GD---------WSEIWISLIILLLFAV  336 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHh--------HHhhHHHHHHHHHHhhHHHHHHHHHHHHH-----------hc---------HHHHHHHHHHHHHHHH
Confidence            01111        12234566778889999999988755431           11         1113356778888888


Q ss_pred             HHHHHHHH
Q psy7219         162 LYSAINLS  169 (288)
Q Consensus       162 v~~~l~~~  169 (288)
                      +++++.++
T Consensus       337 v~~~l~~~  344 (344)
T PF12698_consen  337 VYLLLAIL  344 (344)
T ss_dssp             --------
T ss_pred             HHHHHHhC
Confidence            88877653

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.09  E-value=0.00013  Score=65.01  Aligned_cols=40  Identities=28%  Similarity=0.410  Sum_probs=33.7

Q ss_pred             cceeeeEEEEeCCC-EEEEEcCCCCChHHHHHHHhCCCCCC
Q psy7219         230 PAVNQISFGVGRGE-CFGLLGLNGAGKTTTFKMLTGAIKPT  269 (288)
Q Consensus       230 ~av~~is~~v~~Ge-~~gllG~NGaGKTT~~~~l~G~~~pt  269 (288)
                      .+++.++..+++++ .+.|.|+||+||||+++.+....++.
T Consensus        30 ~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~   70 (269)
T TIGR03015        30 RAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQE   70 (269)
T ss_pred             HHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC
Confidence            47777777777766 88899999999999999999988753

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK09183 transposase/IS protein; Provisional

Probab=97.09  E-value=0.00024  Score=63.41  Aligned_cols=44  Identities=27%  Similarity=0.297  Sum_probs=35.2

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV  275 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i  275 (288)
                      .+.++++ +++||.+.|+||+|+|||++...|.........++..
T Consensus        92 ~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~  135 (259)
T PRK09183         92 SLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRF  135 (259)
T ss_pred             HHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            5677788 9999999999999999999999996654443335543

>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase

Probab=97.06  E-value=0.00068  Score=62.92  Aligned_cols=40  Identities=28%  Similarity=0.336  Sum_probs=36.3

Q ss_pred             EeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219         239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~  278 (288)
                      ++.+..+.+.|++|+||||+++.|.++.+|..+.+.+.+.
T Consensus       175 v~~~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~  214 (340)
T TIGR03819       175 VAARLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDA  214 (340)
T ss_pred             HhCCCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCc
Confidence            5678899999999999999999999999999998888653

Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=97.05  E-value=0.00063  Score=63.23  Aligned_cols=41  Identities=20%  Similarity=0.290  Sum_probs=33.2

Q ss_pred             EeCCCEEEEEcCCCCChHHHHHHHhCCCCC-CCceEEEcccc
Q psy7219         239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAYVMNHS  279 (288)
Q Consensus       239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-t~G~i~i~g~~  279 (288)
                      ..++..+.+.||+||||||+++.+.+..++ ..|.+..-+.+
T Consensus       119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp  160 (343)
T TIGR01420       119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDP  160 (343)
T ss_pred             hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCC
Confidence            457899999999999999999999987764 46777655444

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=97.02  E-value=0.00098  Score=67.16  Aligned_cols=43  Identities=23%  Similarity=0.317  Sum_probs=33.4

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCC-EEEEEcCCCCChHHHHHHH
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGE-CFGLLGLNGAGKTTTFKML  262 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge-~~gllG~NGaGKTT~~~~l  262 (288)
                      .+.++|....++     .   +.++|...+|+ +..+.|+|||||||+++.+
T Consensus         5 ~l~l~nf~~~~~-----~---~~~~~~~~~~~~~~~i~G~Ng~GKttll~ai   48 (650)
T TIGR03185         5 QLTLENFGPYRG-----R---QTFDLSPSSPKPIILIGGLNGAGKTTLLDAI   48 (650)
T ss_pred             EEEEeceEEEcC-----C---ceeeeecCCCCeEEEEECCCCCCHHHHHHHH
Confidence            367777765442     1   46788888777 8889999999999999986

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>smart00053 DYNc Dynamin, GTPase

Probab=97.02  E-value=0.00059  Score=60.19  Aligned_cols=31  Identities=23%  Similarity=0.373  Sum_probs=25.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC--CCCCCceEE
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA--IKPTSGNAY  274 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~--~~pt~G~i~  274 (288)
                      .++++|++||||||+++.|+|.  .+..+|.+.
T Consensus        28 ~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t   60 (240)
T smart00053       28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT   60 (240)
T ss_pred             eEEEEcCCCccHHHHHHHHhCCCccccCCCccc
Confidence            5789999999999999999998  555566554

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.98  E-value=0.00065  Score=54.42  Aligned_cols=30  Identities=33%  Similarity=0.272  Sum_probs=26.3

Q ss_pred             EeCCCEEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219         239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKP  268 (288)
Q Consensus       239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p  268 (288)
                      +++|+++.|.|+.||||||+.|.+......
T Consensus        19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~   48 (133)
T TIGR00150        19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLGI   48 (133)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            468999999999999999999999876543

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=96.98  E-value=0.00087  Score=55.36  Aligned_cols=34  Identities=26%  Similarity=0.340  Sum_probs=25.7

Q ss_pred             eEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219         235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP  268 (288)
Q Consensus       235 is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p  268 (288)
                      .+....++.+..|.||||+||||+++.+....-.
T Consensus        14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~   47 (162)
T cd03227          14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALGG   47 (162)
T ss_pred             cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4444555669999999999999999997544333

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=96.95  E-value=0.00066  Score=72.23  Aligned_cols=27  Identities=26%  Similarity=0.465  Sum_probs=22.2

Q ss_pred             CCEEEEEcCCCCChHHHHH---HHhCCCCC
Q psy7219         242 GECFGLLGLNGAGKTTTFK---MLTGAIKP  268 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~---~l~G~~~p  268 (288)
                      +.+.+|+|||||||||++.   .+.|...+
T Consensus        23 ~~~~~i~G~NGsGKS~ll~ai~~~lg~~~~   52 (1179)
T TIGR02168        23 KGITGIVGPNGCGKSNIVDAIRWVLGEQSA   52 (1179)
T ss_pred             CCcEEEECCCCCChhHHHHHHHHHHcCCch
Confidence            5599999999999999994   46776553

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0066|consensus

Probab=96.92  E-value=0.00094  Score=63.03  Aligned_cols=64  Identities=22%  Similarity=0.323  Sum_probs=48.3

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC--CCCCCCceEEEccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYVMNHSI  280 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G--~~~pt~G~i~i~g~~i  280 (288)
                      +.+++..-+-    .++..+.+-|+.|-.|...||+||||-||||+++-|..  +-.|..=++.+..+.+
T Consensus       265 IKiEnF~ISA----~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEv  330 (807)
T KOG0066|consen  265 IKIENFDISA----QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEV  330 (807)
T ss_pred             ceeeeeeeec----ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeee
Confidence            5566665554    34678899999999999999999999999999999874  3344444556655544

>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]

Probab=96.91  E-value=0.00056  Score=62.59  Aligned_cols=53  Identities=23%  Similarity=0.313  Sum_probs=41.4

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC-CceEEEccccccch
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNHSIRDS  283 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt-~G~i~i~g~~i~~~  283 (288)
                      -..+..++..++|.+-|+||||+||||.++.+.--+.+- +|.+++...++...
T Consensus        13 ~f~~lditf~e~~ttIivgpNGsGKTtvLdair~aL~~fid~~i~~~~ksl~ie   66 (440)
T COG3950          13 CFLNLDITFGESETTIIVGPNGSGKTTVLDAIRNALNKFIDFFIYLRFKSLKIE   66 (440)
T ss_pred             hhhhceeecCCCceEEEECCCCCChhhHHHHHHHHHHhhccceeecccchhhhc
Confidence            455677888899999999999999999999987655554 46888776665433

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=96.89  E-value=0.0011  Score=57.72  Aligned_cols=42  Identities=24%  Similarity=0.383  Sum_probs=34.8

Q ss_pred             EEeCCCEEEEEcCCCCChHHHHHHHhCC-CCC------CCceEEEcccc
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTFKMLTGA-IKP------TSGNAYVMNHS  279 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~-~~p------t~G~i~i~g~~  279 (288)
                      ++++|+++.|.|++|+||||+...++.. ..|      ..+.+++++.+
T Consensus        15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~   63 (235)
T cd01123          15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG   63 (235)
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence            6999999999999999999999988743 233      37888888765

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=96.88  E-value=0.00087  Score=71.00  Aligned_cols=43  Identities=30%  Similarity=0.440  Sum_probs=33.3

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEE---eCCCEEEEEcCCCCChHHHHHHHh
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGV---GRGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v---~~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      +.++|+....+    .    ..++|..   ..+.+|+|.|+|||||||+++.|+
T Consensus         6 l~~~nf~s~~~----~----~~idf~~~~l~~~~l~~I~G~tGaGKStildai~   51 (1047)
T PRK10246          6 LRLKNLNSLKG----E----WKIDFTAEPFASNGLFAITGPTGAGKTTLLDAIC   51 (1047)
T ss_pred             EEeecceeEcC----C----ceEEEeeccCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            56677654431    1    2588885   459999999999999999999998

>PTZ00035 Rad51 protein; Provisional

Probab=96.84  E-value=0.00088  Score=62.10  Aligned_cols=42  Identities=26%  Similarity=0.418  Sum_probs=35.4

Q ss_pred             EEeCCCEEEEEcCCCCChHHHHHHHhCCCC-C-----CCceE-EEcccc
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIK-P-----TSGNA-YVMNHS  279 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-p-----t~G~i-~i~g~~  279 (288)
                      ++++|+++.|.|++|+||||+...++.... |     ..|.+ ++++..
T Consensus       114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~  162 (337)
T PTZ00035        114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG  162 (337)
T ss_pred             CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence            799999999999999999999999986555 4     46666 888765

>TIGR00618 sbcc exonuclease SbcC

Probab=96.84  E-value=0.001  Score=70.50  Aligned_cols=32  Identities=41%  Similarity=0.605  Sum_probs=26.4

Q ss_pred             eEEEEeCCCEEEEEcCCCCChHHHHHHHh----CCCC
Q psy7219         235 ISFGVGRGECFGLLGLNGAGKTTTFKMLT----GAIK  267 (288)
Q Consensus       235 is~~v~~Ge~~gllG~NGaGKTT~~~~l~----G~~~  267 (288)
                      ++|+-. +.+|+|.|||||||||++..|+    |..+
T Consensus        20 idF~~~-~gl~~I~G~nGaGKSTildAI~~aL~G~~~   55 (1042)
T TIGR00618        20 IDFTAL-GPIFLICGKTGAGKTTLLDAITYALYGKLP   55 (1042)
T ss_pred             eeecCC-CCeEEEECCCCCCHHHHHHHHHHHhcCCCC
Confidence            455543 3899999999999999999999    8754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00064 recF recombination protein F; Reviewed

Probab=96.82  E-value=0.0014  Score=61.45  Aligned_cols=36  Identities=22%  Similarity=0.325  Sum_probs=29.7

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      -++++++...+| +..++|+|||||||++..|.....
T Consensus        13 ~~~~~~l~~~~~-~~~i~G~NgsGKT~lleai~~l~~   48 (361)
T PRK00064         13 NYEELDLELSPG-VNVLVGENGQGKTNLLEAIYLLAP   48 (361)
T ss_pred             cccceEEEecCC-eEEEECCCCCCHHHHHHHHHHhCC
Confidence            445678888777 888999999999999999886543

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=96.81  E-value=0.0014  Score=58.84  Aligned_cols=35  Identities=20%  Similarity=0.281  Sum_probs=27.0

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .+++.++...+| +..|.|+|||||||++..|.-..
T Consensus        11 ~~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~   45 (270)
T cd03242          11 NYAELELEFEPG-VTVLVGENAQGKTNLLEAISLLA   45 (270)
T ss_pred             CcceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhc
Confidence            445566776665 67899999999999998876544

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=96.80  E-value=0.001  Score=51.39  Aligned_cols=21  Identities=33%  Similarity=0.580  Sum_probs=19.8

Q ss_pred             EEEEcCCCCChHHHHHHHhCC
Q psy7219         245 FGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       245 ~gllG~NGaGKTT~~~~l~G~  265 (288)
                      ++++|+.|+||||+++.|+|.
T Consensus         2 V~iiG~~~~GKSTlin~l~~~   22 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTGK   22 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            689999999999999999985

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=96.79  E-value=0.0014  Score=55.08  Aligned_cols=20  Identities=25%  Similarity=0.508  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q psy7219         244 CFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~  263 (288)
                      ...++|+||+|||+++..|.
T Consensus        24 ~~~i~G~NGsGKSnil~Ai~   43 (178)
T cd03239          24 FNAIVGPNGSGKSNIVDAIC   43 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            88899999999999999874

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=96.78  E-value=0.0012  Score=58.42  Aligned_cols=35  Identities=17%  Similarity=0.274  Sum_probs=30.7

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV  275 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i  275 (288)
                      +++..+++|++|+||||+++.|.|......|++.-
T Consensus       119 ~~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~  153 (245)
T TIGR00157       119 QNRISVFAGQSGVGKSSLINALDPSVKQQVNDISS  153 (245)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhhhhhccccceec
Confidence            35789999999999999999999998888887753

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=96.76  E-value=0.0012  Score=51.31  Aligned_cols=23  Identities=30%  Similarity=0.374  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +++|.|+.||||||+.+.|+-.+
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~   23 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERL   23 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999998754

...

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=96.74  E-value=0.0011  Score=61.30  Aligned_cols=33  Identities=21%  Similarity=0.227  Sum_probs=28.6

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhCCCCCCCceEE
Q psy7219         242 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY  274 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~  274 (288)
                      +.-+.|.|+||+||||++|.++|..++..|.+.
T Consensus        25 ~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~   57 (337)
T TIGR02030        25 IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAG   57 (337)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHhhcccccccC
Confidence            456779999999999999999999998777663

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>PLN03210 Resistant to P

Probab=96.72  E-value=0.001  Score=71.26  Aligned_cols=45  Identities=18%  Similarity=0.312  Sum_probs=37.0

Q ss_pred             eeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC-CCCCceEEEccc
Q psy7219         234 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI-KPTSGNAYVMNH  278 (288)
Q Consensus       234 ~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~-~pt~G~i~i~g~  278 (288)
                      -++++.++++++||.|++|+||||+.+.+.+.. ...+|.+++++.
T Consensus       199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~  244 (1153)
T PLN03210        199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA  244 (1153)
T ss_pred             HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence            356778899999999999999999999995544 445899988753

syringae 6; Provisional

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.68  E-value=0.0012  Score=59.81  Aligned_cols=30  Identities=33%  Similarity=0.492  Sum_probs=26.8

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhCCCCCC
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTGAIKPT  269 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt  269 (288)
                      ++|.+++++||+|+|||||...|++.....
T Consensus       192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~  221 (282)
T TIGR03499       192 EQGGVIALVGPTGVGKTTTLAKLAARFVLE  221 (282)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            578899999999999999999999887654

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=96.67  E-value=0.00064  Score=62.75  Aligned_cols=38  Identities=24%  Similarity=0.281  Sum_probs=32.7

Q ss_pred             eeeeEEEEeC--CCEEEEEcCCCCChHHHHHHHhCCCCCC
Q psy7219         232 VNQISFGVGR--GECFGLLGLNGAGKTTTFKMLTGAIKPT  269 (288)
Q Consensus       232 v~~is~~v~~--Ge~~gllG~NGaGKTT~~~~l~G~~~pt  269 (288)
                      .++++..+++  ++.++++|++|+||||+.+.|++.+.+.
T Consensus       150 w~~i~~~~~~~~~~~~~~~G~~~~gkstl~~~l~~~~~~~  189 (325)
T TIGR01526       150 WKHIPREVRPFFVKTVAILGGESTGKSTLVNKLAAVFNTT  189 (325)
T ss_pred             HHhCCHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence            3457788888  9999999999999999999999986553

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=96.67  E-value=0.0023  Score=57.61  Aligned_cols=32  Identities=25%  Similarity=0.434  Sum_probs=25.6

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      -.+++.+...+| ..+|+|+|||||||++..|.
T Consensus        11 ~~~~~~i~~~~~-~~~i~G~nGsGKS~il~ai~   42 (276)
T cd03241          11 LIEELELDFEEG-LTVLTGETGAGKSILLDALS   42 (276)
T ss_pred             ceeeeEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence            345566766665 78899999999999998875

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.66  E-value=0.0018  Score=63.89  Aligned_cols=29  Identities=34%  Similarity=0.441  Sum_probs=24.8

Q ss_pred             eEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219         235 ISFGVGRGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       235 is~~v~~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      +++...++.+++|.|+|||||||++..|+
T Consensus        20 ~~i~f~~~g~~~i~G~NG~GKStll~aI~   48 (562)
T PHA02562         20 IEIQLDKVKKTLITGKNGAGKSTMLEALT   48 (562)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence            45556677899999999999999998877

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.66  E-value=0.0012  Score=64.21  Aligned_cols=29  Identities=41%  Similarity=0.606  Sum_probs=25.8

Q ss_pred             EeCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         239 VGRGECFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      +++|++++++|++|+||||++..|++...
T Consensus       347 l~~G~vIaLVGPtGvGKTTtaakLAa~la  375 (559)
T PRK12727        347 LERGGVIALVGPTGAGKTTTIAKLAQRFA  375 (559)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999999987543

>TIGR00602 rad24 checkpoint protein rad24

Probab=96.64  E-value=0.00088  Score=66.88  Aligned_cols=39  Identities=21%  Similarity=0.264  Sum_probs=35.3

Q ss_pred             cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219         230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP  268 (288)
Q Consensus       230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p  268 (288)
                      .++++.++...+|+++.|.||+|+||||++++++++..+
T Consensus        98 ~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~  136 (637)
T TIGR00602        98 TWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGI  136 (637)
T ss_pred             HHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            367888899999999999999999999999999998765

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00611 recf recF protein

Probab=96.59  E-value=0.0017  Score=60.89  Aligned_cols=35  Identities=20%  Similarity=0.334  Sum_probs=28.8

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      -++++++...+| +..|.|+||+||||++..|..+.
T Consensus        13 ~~~~~~l~~~~~-~nvi~G~NGsGKT~lLeAi~~l~   47 (365)
T TIGR00611        13 NYDAVDLELSPG-VNVIVGPNGQGKTNLLEAIYYLA   47 (365)
T ss_pred             ceeeeEEEECCC-eEEEECCCCCCHHHHHHHHHHHc
Confidence            456788888777 66899999999999999987443

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=96.58  E-value=0.0035  Score=64.69  Aligned_cols=44  Identities=23%  Similarity=0.309  Sum_probs=38.1

Q ss_pred             eEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219         235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       235 is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~  278 (288)
                      +|+.+.+++..+++|++|+||||+++.|.+......+++.+-..
T Consensus       439 ~n~~~~~~~~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i~~~D~  482 (800)
T PRK13898        439 FNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFFFDK  482 (800)
T ss_pred             EEEEEcCCCEEEEECCCCCcHHHHHHHHHhhcccCCCeEEEeCC
Confidence            56778888999999999999999999999988888888776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	288
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		2e-07
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		4e-06
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		1e-05
4g1u_C	266	X-Ray Structure Of The Bacterial Heme Transporter H		3e-05
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		7e-05
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		8e-05
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		1e-04
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		1e-04
1g29_1	372	Malk Length = 372		1e-04
2ix8_A	976	Model For Eef3 Bound To An 80s Ribosome Length = 97		2e-04
2iwh_A	986	Structure Of Yeast Elongation Factor 3 In Complex W		2e-04
2iw3_A	986	Elongation Factor 3 In Complex With Adp Length = 98		2e-04
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		2e-04
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		2e-04
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		6e-04
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		8e-04

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           +VVK L K        K  +  ISF +  GE FGL+G NGAGKTTT ++++  IKP+SG 
Sbjct: 16  VVVKDLRKRIGK----KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 71
Query: 273 AYVMNHSIRDSMDLVR 288
             V   ++ +    VR
Sbjct: 72  VTVFGKNVVEEPHEVR 87

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 28/44 (63%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274
           AV+ +SF V  GE   LLG +G GKTTT  ML G  KPTSG  Y
Sbjct: 18  AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY 61

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
           +V  +SF +  GE  GLLG +G+GKTT  +++ G  +PT G+ ++    + D
Sbjct: 30  SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTD 81

>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
           +N +S  +  GE   ++G NGAGK+T  ++LTG + P+ G  +++  ++
Sbjct: 27  INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNL 75

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
           AVN+++  +  GE   LLG +G GKTTT +M+ G  +PT G  Y  +  +
Sbjct: 27  AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV 76

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
           AVN+++  +  GE   LLG +G GKTTT +M+ G  +PT G  Y  +  +
Sbjct: 26  AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV 75

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           ++VK + K++   K    A++ ++  +  GE FG+LG +GAGKTT  +++ G   P++G 
Sbjct: 4   IIVKNVSKVFKKGKVV--ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 273 AY 274
            Y
Sbjct: 62  LY 63

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           ++VK + K++   K    A++ ++  +  GE FG+LG +GAGKTT  +++ G   P++G 
Sbjct: 4   IIVKNVSKVFKKGKVV--ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 273 AY 274
            Y
Sbjct: 62  LY 63

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
           AV ++S  V  GE   LLG +G GKTTT +M+ G  +P+ G  Y+ +  + D
Sbjct: 18  AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVAD 69

>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274
           +KP +  I+F         ++G NGAGK+T   +LTG + PTSG  Y
Sbjct: 679 SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 725

>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274
           +KP +  I+F         ++G NGAGK+T   +LTG + PTSG  Y
Sbjct: 685 SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731

>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274
           +KP +  I+F         ++G NGAGK+T   +LTG + PTSG  Y
Sbjct: 685 SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 224 NSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
           N  D   A+  I+  + RGE   +LG NG GK+T F+   G +KP+SG     N  I
Sbjct: 16  NYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPI 72

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
           AV  +S  +  GE   LLG +G GKTTT + + G  +PT G  Y+ ++ + D
Sbjct: 21  AVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVAD 72

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
            K A+  +S  +  GEC  + G  G+GK+T  +++ G I+PTSG+
Sbjct: 19  EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGD 63

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
            K A+  +S  +  GEC  + G  G+GK+T  +++ G I+PTSG+
Sbjct: 21  EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGD 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	288
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	4e-24
1sgw_A	214	Putative ABC transporter; structural genomics, P p	9e-24
1g6h_A	257	High-affinity branched-chain amino acid transport	5e-14
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	6e-14
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	8e-13
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	7e-06
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	4e-12
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	5e-12
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	3e-11
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	1e-06
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	4e-11
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	5e-11
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	8e-08
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	3e-10
1ji0_A	240	ABC transporter; ATP binding protein, structural g	4e-10
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	5e-10
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	7e-10
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	8e-07
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	7e-10
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	5e-06
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	3e-08
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	5e-08
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	6e-08
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	2e-07
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	1e-06
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	2e-05
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	1e-04
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	6e-04
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	8e-04
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	8e-04

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 96.8 bits (242), Expect = 4e-24
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 4/90 (4%)

Query: 199 ERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTT 258
             +++         +VVK L K        K  +  ISF +  GE FGL+G NGAGKTTT
Sbjct: 2   GSDKIHHHHHHMGAVVVKDLRKRI----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTT 57

Query: 259 FKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 288
            ++++  IKP+SG   V   ++ +    VR
Sbjct: 58  LRIISTLIKPSSGIVTVFGKNVVEEPHEVR 87

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 95.3 bits (238), Expect = 9e-24
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 209 SGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 268
            G  L ++ L   Y      KP + +I+  + +G      G NG GKTT  K ++  +KP
Sbjct: 7   HGSKLEIRDLSVGYD-----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP 61

Query: 269 TSGNAYVMNHSIRD 282
             G        I  
Sbjct: 62  LKGEIIYNGVPITK 75

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 69.5 bits (171), Expect = 5e-14
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
           A++ +S  V +G+   ++G NG+GK+T   ++TG +K   G  Y  N  I
Sbjct: 22  ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI 71

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 69.5 bits (171), Expect = 6e-14
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 208 DSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 267
            S  ++ + ++ ++       K  + +IS+ + +G+ + L GLNGAGKTT   +L     
Sbjct: 17  GSHMLIQLDQIGRMK----QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP 72

Query: 268 PTSGNAYVMNH 278
            TSG   +   
Sbjct: 73  ATSGTVNLFGK 83

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 67.3 bits (165), Expect = 8e-13
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 179 FTRSNPHPVPVSLEEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFG 238
           F R       V     +++  +       +   ++   RL K Y         +      
Sbjct: 254 FLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYG-----SFRLEVEPGE 308

Query: 239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           + +GE  G++G NG GKTT  KML G  +PT G
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 341

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 14/38 (36%), Positives = 19/38 (50%)

Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 268
            V      V  G   G++G NG GK+T  K+L G + P
Sbjct: 36  FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIP 73

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 64.1 bits (157), Expect = 4e-12
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           +L V+ L   Y+   D   A+  I+  + RGE   +LG NG GK+T F+   G +KP+SG
Sbjct: 7   ILKVEELNYNYS---DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG 63

Query: 272 NAYVMNHSIRDS 283
                N  I  S
Sbjct: 64  RILFDNKPIDYS 75

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 63.5 bits (155), Expect = 5e-12
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274
           +K +    +     + ++  I+  V  GE   +LG NG+GKTT  + ++G + P SGN +
Sbjct: 4   LKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISG-LLPYSGNIF 61

Query: 275 VMNHSIRD 282
           +    +R 
Sbjct: 62  INGMEVRK 69

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 2/103 (1%)

Query: 179 FTRSNPHPVPVSLEEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFG 238
           F +       + +  D+++   + V     S D+    +  KI     D +  V+  +  
Sbjct: 233 FLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVD--NGE 290

Query: 239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281
              GE  G+LG NG GKTT  ++L G I    G+       + 
Sbjct: 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILS 333

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 231 AVNQISFGVGR-GECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
                     +     G+LG NG GKTT  K+L G I P  G+
Sbjct: 13  GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD 55

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 61.1 bits (149), Expect = 4e-11
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 215 VKRLFKIY-ANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 273
           V  +  I+   +   K A+  +S  +  GEC  + G  G+GK+T  +++ G I+PTSG+ 
Sbjct: 5   VVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV 64

Query: 274 YV--MNHSIRD 282
                     +
Sbjct: 65  LYDGERKKGYE 75

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 61.9 bits (151), Expect = 5e-11
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 179 FTRSNPHPVPVSLEEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFG 238
           F +       V     ++R  +       +   ++   RL K Y         +      
Sbjct: 324 FLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDY-----GSFKLEVEPGE 378

Query: 239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           + +GE  G++G NG GKTT  KML G  +PT G
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 411

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 51.9 bits (125), Expect = 8e-08
 Identities = 15/43 (34%), Positives = 19/43 (44%)

Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 273
            V      V  G   G++G NG GKTT  K+L G + P     
Sbjct: 106 FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCED 148

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 58.0 bits (141), Expect = 3e-10
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 10/71 (14%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
            L V+ L   Y           Q++F + +G+   +LG NG GK+T   +L G  +P  G
Sbjct: 4   ALSVENLGFYYQA---ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQG 60

Query: 272 N-------AYV 275
                    +V
Sbjct: 61  KIEVYQSIGFV 71

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 57.8 bits (141), Expect = 4e-10
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           VL V+ L   Y        A+  I   V RG+   L+G NGAGKTTT   + G ++   G
Sbjct: 6   VLEVQSLHVYYGAIH----AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG 61

Query: 272 NAYVMNHSI 280
                   I
Sbjct: 62  KIIFNGQDI 70

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 58.5 bits (142), Expect = 5e-10
 Identities = 19/84 (22%), Positives = 38/84 (45%)

Query: 197 RKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKT 256
                      D   ++ +  + K++     T  A+N +S  V  G+ +G++G +GAGK+
Sbjct: 9   HHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKS 68

Query: 257 TTFKMLTGAIKPTSGNAYVMNHSI 280
           T  + +    +PT G+  V    +
Sbjct: 69  TLIRCVNLLERPTEGSVLVDGQEL 92

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 21/87 (24%), Positives = 28/87 (32%), Gaps = 4/87 (4%)

Query: 185 HPVPVSLEEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGEC 244
             +    E    R      +   DS          K           +N         E 
Sbjct: 325 ENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQG----DFVLNVEEGEFSDSEI 380

Query: 245 FGLLGLNGAGKTTTFKMLTGAIKPTSG 271
             ++G NG GKTT  K+L GA+KP  G
Sbjct: 381 LVMMGENGTGKTTLIKLLAGALKPDEG 407

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 48.9 bits (117), Expect = 8e-07
 Identities = 15/43 (34%), Positives = 19/43 (44%)

Query: 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
                       G+  GL+G NG GK+T  K+L G  KP  G 
Sbjct: 91  SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 58.5 bits (141), Expect = 7e-10
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 4/85 (4%)

Query: 192 EEDDVRKERERVERGADSGDVLVVKRLFKIYANSK----DTKPAVNQISFGVGRGECFGL 247
           E  +   E +  E G   G     K + K+          +KP +  I+F         +
Sbjct: 645 ELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAV 704

Query: 248 LGLNGAGKTTTFKMLTGAIKPTSGN 272
           +G NGAGK+T   +LTG + PTSG 
Sbjct: 705 IGPNGAGKSTLINVLTGELLPTSGE 729

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 47.0 bits (111), Expect = 5e-06
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 265
           K  +N+    + R   +G+ G NG GK+T  + +   
Sbjct: 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANG 484

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 52.9 bits (128), Expect = 3e-08
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           ++ ++ L + + N      +++ +S  V  GE F +LG  GAGKT   +++ G   P SG
Sbjct: 1   MIEIESLSRKWKN-----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG 55

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 52.6 bits (127), Expect = 5e-08
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           L +  L K +       P +N IS  +  GE   ++G +G GKTT  + L G  +P SG
Sbjct: 5   LHIGHLSKSF----QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSG 59

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 51.4 bits (124), Expect = 6e-08
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
              +  +S  V  GE   L+G NGAGK+T    + G +    G+       +  
Sbjct: 13  STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEA 65

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 209 SGDVLV-VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 267
            G + +    + KIY        +V  +SF +  GE  GLLG +G+GKTT  +++ G  +
Sbjct: 10  HGSMTIEFVGVEKIY---PGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER 66

Query: 268 PTSG 271
           PT G
Sbjct: 67  PTKG 70

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 6/77 (7%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           ++VK + K++   K    A++ ++  +  GE FG+LG +GAGKTT  +++ G   P++G 
Sbjct: 4   IIVKNVSKVFKKGK--VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61

Query: 273 AY----VMNHSIRDSMD 285
            Y    ++  + +  + 
Sbjct: 62  LYFDDRLVASNGKLIVP 78

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 19/113 (16%)

Query: 189 VSLE------EDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRG 242
           V +E      E+   +  E+ ++  ++               S    P +  I+F + RG
Sbjct: 5   VVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERG 64

Query: 243 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-------AYV------MNHSIRD 282
           +   + G  GAGKT+   M+ G ++P+ G        ++       M  +I++
Sbjct: 65  QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKE 117

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
           + F +G  +   LLG  GAGK+   +++ G +KP  G   +
Sbjct: 18  VDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRL 57

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 14/56 (25%), Positives = 28/56 (50%)

Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
              PA+  I+  +  G+   L+G +G+GK+T   ++T       G+  +  H +R+
Sbjct: 354 REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLRE 409

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 13/71 (18%)

Query: 225 SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-------AYV-- 275
            +   P +  I+F + RG+   + G  GAGKT+   M+ G ++P+ G        ++   
Sbjct: 17  EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQ 76

Query: 276 ----MNHSIRD 282
               M  +I++
Sbjct: 77  FSWIMPGTIKE 87

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 39.9 bits (94), Expect = 8e-04
 Identities = 18/56 (32%), Positives = 32/56 (57%)

Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
             KPA++ +SF + +G+   L+G +G+GK+T   + T      SG+  +  H +RD
Sbjct: 354 KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRD 409

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	288
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.76
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.75
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.74
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.73
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.73
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.73
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.72
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.72
1g6h_A	257	High-affinity branched-chain amino acid transport	99.72
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.72
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.71
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.71
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.71
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.71
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.71
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.7
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.69
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.69
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.69
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.69
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.69
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.68
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.68
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.68
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.68
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.68
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.68
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.67
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.67
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.67
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.65
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.65
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.65
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.65
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.61
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.61
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.6
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.59
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.59
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.58
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.57
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.57
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.54
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.48
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.47
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.45
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.44
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.43
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.41
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.34
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.32
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.3
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.29
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.26
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.26
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.24
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.23
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.15
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.14
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.13
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.11
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.1
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.09
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.09
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.07
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.07
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.05
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.04
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.04
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.03
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.0
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.0
2og2_A	359	Putative signal recognition particle receptor; nuc	99.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.98
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.98
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.95
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	98.94
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.93
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.9
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.89
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.85
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.81
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.81
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.8
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.8
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.8
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.8
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.79
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.78
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.75
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.75
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.74
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	98.72
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.71
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.68
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.66
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.66
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.66
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.65
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.63
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.61
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.58
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.58
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.57
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.56
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.56
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.55
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.45
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.43
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.43
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.43
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.42
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.41
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.4
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.38
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.37
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.36
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.36
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.35
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.34
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.33
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.32
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.31
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.31
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.31
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.29
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.29
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.29
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.28
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.25
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	98.22
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.21
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.19
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.18
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.17
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.17
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.15
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.12
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.1
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.1
1e69_A	322	Chromosome segregation SMC protein; structural mai	98.09
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.08
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.07
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	98.07
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.06
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.04
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.02
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.99
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.95
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.9
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.87
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.82
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.79
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.7
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.69
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.65
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.64
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	97.63
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.6
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.57
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.56
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.53
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.53
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.53
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.48
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.46
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.45
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.45
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.4
3ice_A	422	Transcription termination factor RHO; transcriptio	97.36
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.34
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.25
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.17
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.16
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	97.12
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.09
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.0
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.96
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.92
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.89
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.82
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.81
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.81
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.68
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.64
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.62
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.62
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.6
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.59
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	96.57
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.41
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.38
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.34
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	95.99
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	95.98
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	95.9
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.68
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	95.66
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	95.66
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.6
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	95.58
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	95.58
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.57
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.54
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.53
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.44
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	95.41
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.39
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	95.38
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.36
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	95.29
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.27
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	95.27
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.26
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.26
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	95.26
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.26
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	95.22
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.17
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.09
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.03
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	94.9
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	94.83
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	94.81
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	94.81
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	94.8
3llu_A	196	RAS-related GTP-binding protein C; structural geno	94.78
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	94.77
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	94.76
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	94.76
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	94.73
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	94.72
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	94.7
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	94.7
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	94.65
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	94.65
3bos_A	242	Putative DNA replication factor; P-loop containing	94.61
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	94.61
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	94.61
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.54
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	94.5
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	94.49
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	94.49
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	94.47
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	94.45
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	94.44
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	94.44
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	94.44
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	94.35
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	94.34
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	94.34
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	94.32
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	94.29
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	94.25
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	94.24
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	94.23
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	94.23
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	94.17
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	94.15
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	94.13
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	94.1
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	94.1
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	94.08
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	94.02
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	94.0
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	94.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	93.98
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	93.97
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	93.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	93.94
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	93.87
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	93.87
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	93.86
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	93.85
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	93.83
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	93.82
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	93.81
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	93.81
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	93.75
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	93.69
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	93.62
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	93.55
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	93.53
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	93.53
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	93.44
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	93.43
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	93.43
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	93.37
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	93.3
1u94_A	356	RECA protein, recombinase A; homologous recombinat	93.28
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	93.27
3l0o_A	427	Transcription termination factor RHO; helicase, RH	93.27
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	93.25
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	93.25
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	93.17
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	93.15
2hf9_A	226	Probable hydrogenase nickel incorporation protein	93.14
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	93.0
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	92.96
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	92.92
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	92.84
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	92.83
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	92.83
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	92.75
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	92.74
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	92.73
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	92.71
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	92.68
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	92.64
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	92.35
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	92.06
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	92.03
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	91.98
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	91.98
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	91.93
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	91.68
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	90.88
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	91.49
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	91.43
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	91.38
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	91.11
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	91.04
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	90.93
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	90.69
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	90.62
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	90.48
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	90.39
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	90.3
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	90.25
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	90.22
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	90.17
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	90.1
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	90.02
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	89.59
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	89.58
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	89.56
2chg_A	226	Replication factor C small subunit; DNA-binding pr	89.5
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	89.49
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	89.43
3co5_A	143	Putative two-component system transcriptional RES	89.43
2qgz_A	308	Helicase loader, putative primosome component; str	89.41
1xp8_A	366	RECA protein, recombinase A; recombination, radior	89.37
1tue_A	212	Replication protein E1; helicase, replication, E1E	89.24
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	89.16
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	89.12
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	89.05
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	88.94
2xxa_A	433	Signal recognition particle protein; protein trans	88.92
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	88.9
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	88.88
3gqb_A	578	V-type ATP synthase alpha chain; A3B3, V-ATPase, A	88.86
3vr4_A	600	V-type sodium ATPase catalytic subunit A; V-ATPase	88.79
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	88.66
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	88.57
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	88.44
3pvs_A	447	Replication-associated recombination protein A; ma	88.39
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	88.33
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	88.18
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	88.13
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	88.08
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	88.06
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	88.05
1wb1_A	482	Translation elongation factor SELB; selenocysteine	87.98
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	87.71
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	87.63
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	87.62
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	87.42
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	87.41
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	87.3
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	87.27
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	87.21
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	87.0
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	86.99
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	86.92
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	86.86
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	86.7
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	86.69
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	86.66
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	86.61
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	86.59
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	86.54
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	86.27
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	85.79
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	85.55
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	85.31
1lkx_A	697	Myosin IE heavy chain; myosin motor domain, lever	85.16
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	85.14
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	85.06
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	85.01
1e9r_A	437	Conjugal transfer protein TRWB; coupling protein,	85.0
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	84.83
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	84.8
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	84.8
3io5_A	333	Recombination and repair protein; storage dimer, i	84.45
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	84.06
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	84.05
2r44_A	331	Uncharacterized protein; putative ATPase, structur	83.99
2olr_A	540	Phosphoenolpyruvate carboxykinase; carbon dioxide,	83.81
1j3b_A	529	ATP-dependent phosphoenolpyruvate carboxykinase; a	83.67
1ii2_A	524	Phosphoenolpyruvate carboxykinase; phosphate bindi	83.66
2v26_A	784	Myosin VI; calmodulin-binding, nucleotide-binding,	83.56
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	83.41
4db1_A	783	Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb	83.32
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	83.28
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	83.26
1w9i_A	770	Myosin II heavy chain; molecular motor, ATPase, mo	83.21
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	83.17
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	83.11
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	83.06
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	82.92
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	82.91
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	82.72
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	82.53
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	82.51
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	82.4
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	82.39
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	82.32
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	82.26
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	82.24
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	82.18
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	82.06
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	81.83
1ytm_A	532	Phosphoenolpyruvate carboxykinase [ATP], phosphoen	81.58
2fna_A	357	Conserved hypothetical protein; structural genomic	81.25
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	80.85
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	80.81
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	80.8
4anj_A	1052	Unconventional myosin-VI, green fluorescent prote;	80.79
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	80.74
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	80.67
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	80.39

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.76  E-value=9.7e-19  Score=152.60  Aligned_cols=70  Identities=26%  Similarity=0.489  Sum_probs=63.2

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++|++|.|++..+.+++++|+||++++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus         2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~   71 (235)
T 3tif_A            2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND   71 (235)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTT
T ss_pred             EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEccc
Confidence            6899999999743223579999999999999999999999999999999999999999999999998753

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.75  E-value=1.3e-18  Score=160.52  Aligned_cols=72  Identities=25%  Similarity=0.496  Sum_probs=65.8

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..+.++|++|.|+.++++..|++|+||+|++||++||+|||||||||++|+|+|+++|++|+|.++|.++..
T Consensus        23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~   94 (366)
T 3tui_C           23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTT   94 (366)
T ss_dssp             CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSS
T ss_pred             ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCc
Confidence            479999999999753334679999999999999999999999999999999999999999999999999864

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.74  E-value=2.9e-18  Score=151.47  Aligned_cols=68  Identities=43%  Similarity=0.667  Sum_probs=63.5

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++++|++|.|+    ++++++|+||++++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus        14 ~~l~i~~l~~~y~----~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~   81 (256)
T 1vpl_A           14 GAVVVKDLRKRIG----KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE   81 (256)
T ss_dssp             CCEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT
T ss_pred             CeEEEEEEEEEEC----CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc
Confidence            4699999999995    3579999999999999999999999999999999999999999999999998754

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.73  E-value=4.5e-18  Score=147.33  Aligned_cols=67  Identities=24%  Similarity=0.423  Sum_probs=62.4

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|++|.|++    +++++|+||++++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus         4 ~l~~~~l~~~y~~----~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~   70 (224)
T 2pcj_A            4 ILRAENIKKVIRG----YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDY   70 (224)
T ss_dssp             EEEEEEEEEEETT----EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCS
T ss_pred             EEEEEeEEEEECC----EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCC
Confidence            5889999999953    569999999999999999999999999999999999999999999999998753

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.73  E-value=5.3e-18  Score=150.55  Aligned_cols=68  Identities=26%  Similarity=0.551  Sum_probs=63.7

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..+.++|++|.|+    ++++++|+||+|++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus        10 ~~l~~~~l~~~~~----~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~   77 (266)
T 4g1u_C           10 ALLEASHLHYHVQ----QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNS   77 (266)
T ss_dssp             CEEEEEEEEEEET----TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTT
T ss_pred             ceEEEEeEEEEeC----CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCc
Confidence            4689999999995    3679999999999999999999999999999999999999999999999999864

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.73  E-value=4.4e-18  Score=151.78  Aligned_cols=67  Identities=36%  Similarity=0.583  Sum_probs=62.6

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.++|++|.|++   ++++++|+||+|++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.
T Consensus         7 ~l~i~~ls~~y~~---~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~   73 (275)
T 3gfo_A            7 ILKVEELNYNYSD---GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPID   73 (275)
T ss_dssp             EEEEEEEEEECTT---SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECC
T ss_pred             EEEEEEEEEEECC---CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECC
Confidence            6899999999963   345999999999999999999999999999999999999999999999999984

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.72  E-value=7.7e-18  Score=147.33  Aligned_cols=67  Identities=34%  Similarity=0.550  Sum_probs=62.6

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|++|.|++    +++++|+||++++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus         6 ~l~~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~   72 (240)
T 1ji0_A            6 VLEVQSLHVYYGA----IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITN   72 (240)
T ss_dssp             EEEEEEEEEEETT----EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTT
T ss_pred             eEEEEeEEEEECC----eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC
Confidence            5889999999953    569999999999999999999999999999999999999999999999998853

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.72  E-value=7.2e-18  Score=149.46  Aligned_cols=66  Identities=20%  Similarity=0.330  Sum_probs=62.2

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.++|++|.|+    ++++++|+||++++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.
T Consensus        24 ~l~i~~l~~~y~----~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~   89 (263)
T 2olj_A           24 MIDVHQLKKSFG----SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK   89 (263)
T ss_dssp             SEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESS
T ss_pred             eEEEEeEEEEEC----CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence            599999999995    356999999999999999999999999999999999999999999999999874

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.72  E-value=6.4e-18  Score=149.27  Aligned_cols=67  Identities=28%  Similarity=0.558  Sum_probs=62.6

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|++|.|+    ++++++|+||++++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus         7 ~l~i~~l~~~y~----~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~   73 (257)
T 1g6h_A            7 ILRTENIVKYFG----EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN   73 (257)
T ss_dssp             EEEEEEEEEEET----TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTT
T ss_pred             EEEEeeeEEEEC----CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC
Confidence            589999999995    3569999999999999999999999999999999999999999999999998753

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.72  E-value=9.8e-18  Score=148.54  Aligned_cols=66  Identities=26%  Similarity=0.426  Sum_probs=62.2

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.++|++|.|+    ++++++|+||++++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.
T Consensus         6 ~l~i~~l~~~y~----~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~   71 (262)
T 1b0u_A            6 KLHVIDLHKRYG----GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNIN   71 (262)
T ss_dssp             CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECC
T ss_pred             eEEEeeEEEEEC----CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcc
Confidence            589999999995    356999999999999999999999999999999999999999999999999885

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.71  E-value=1.1e-17  Score=146.89  Aligned_cols=69  Identities=22%  Similarity=0.442  Sum_probs=62.8

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      -+.++|++|.|++  +++.+++|+||+|++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus         7 ~~~~~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~   75 (247)
T 2ff7_A            7 DITFRNIRFRYKP--DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLAL   75 (247)
T ss_dssp             EEEEEEEEEESST--TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT
T ss_pred             ceeEEEEEEEeCC--CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhh
Confidence            5889999999942  13569999999999999999999999999999999999999999999999998753

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.71  E-value=1.1e-17  Score=154.13  Aligned_cols=65  Identities=32%  Similarity=0.554  Sum_probs=61.9

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  280 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i  280 (288)
                      .+.++|++|.|+    ++.+++|+||+|++||+++|+|||||||||++|+|+|+++|++|+|.++|.++
T Consensus         4 ~l~i~~ls~~y~----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i   68 (359)
T 3fvq_A            4 ALHIGHLSKSFQ----NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTI   68 (359)
T ss_dssp             CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEE
T ss_pred             EEEEEeEEEEEC----CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence            589999999995    36799999999999999999999999999999999999999999999999988

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.71  E-value=1.1e-17  Score=143.84  Aligned_cols=68  Identities=28%  Similarity=0.477  Sum_probs=62.3

Q ss_pred             CCCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         209 SGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       209 ~~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+..++++|++|.|+    + ++++|+||++++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.
T Consensus         7 ~~~~l~~~~ls~~y~----~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~   74 (214)
T 1sgw_A            7 HGSKLEIRDLSVGYD----K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT   74 (214)
T ss_dssp             --CEEEEEEEEEESS----S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG
T ss_pred             CCceEEEEEEEEEeC----C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh
Confidence            456899999999994    3 6999999999999999999999999999999999999999999999998864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.71  E-value=1.3e-17  Score=149.06  Aligned_cols=66  Identities=27%  Similarity=0.461  Sum_probs=62.3

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.++|++|.|++    +++++|+||++++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.
T Consensus        21 ~l~~~~l~~~y~~----~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~   86 (279)
T 2ihy_A           21 LIQLDQIGRMKQG----KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPG   86 (279)
T ss_dssp             EEEEEEEEEEETT----EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC
T ss_pred             eEEEEeEEEEECC----EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcc
Confidence            6899999999953    57999999999999999999999999999999999999999999999999875

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.71  E-value=1.5e-17  Score=154.27  Aligned_cols=67  Identities=22%  Similarity=0.444  Sum_probs=62.7

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|++|.|+    ++.+++|+||+|++||+++|+|||||||||++|+|+|+++|++|+|.++|.++..
T Consensus         3 ~l~~~~l~~~yg----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~   69 (381)
T 3rlf_A            3 SVQLQNVTKAWG----EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMND   69 (381)
T ss_dssp             CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred             EEEEEeEEEEEC----CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCC
Confidence            488999999995    3679999999999999999999999999999999999999999999999998854

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.70  E-value=2e-17  Score=144.88  Aligned_cols=67  Identities=24%  Similarity=0.435  Sum_probs=61.7

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++|+++.|++   ++++++|+||+|++||++||+|||||||||++|+|+|+++|++|+|.++|.++.+
T Consensus         2 l~~~~l~~~y~~---~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~   68 (243)
T 1mv5_A            2 LSARHVDFAYDD---SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDN   68 (243)
T ss_dssp             EEEEEEEECSSS---SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTT
T ss_pred             EEEEEEEEEeCC---CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhh
Confidence            678999999942   3579999999999999999999999999999999999999999999999998753

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.69  E-value=2.8e-17  Score=145.86  Aligned_cols=71  Identities=27%  Similarity=0.502  Sum_probs=62.3

Q ss_pred             eEEEEeeeEEeccccc-cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~-~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|++|.|+..+. .+++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~   73 (266)
T 2yz2_A            2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG   73 (266)
T ss_dssp             CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCH
T ss_pred             EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECch
Confidence            3789999999952110 1569999999999999999999999999999999999999999999999988753

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.69  E-value=3.4e-17  Score=151.00  Aligned_cols=67  Identities=43%  Similarity=0.616  Sum_probs=62.3

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|++|.|+    ++.+++|+||++++||+++|+|||||||||++|+|+|+++|++|+|.++|.++.+
T Consensus         3 ~l~~~~l~~~y~----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~   69 (359)
T 2yyz_A            3 SIRVVNLKKYFG----KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVND   69 (359)
T ss_dssp             CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred             EEEEEEEEEEEC----CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCC
Confidence            378999999994    3579999999999999999999999999999999999999999999999998753

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.69  E-value=3.5e-17  Score=145.69  Aligned_cols=71  Identities=21%  Similarity=0.385  Sum_probs=63.9

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..+.++|+++.|++. +++++++|+||+|++||+++|+|+|||||||++|+|+|+++|++|+|.++|.++.+
T Consensus        15 ~~l~~~~l~~~y~~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~   85 (271)
T 2ixe_A           15 GLVKFQDVSFAYPNH-PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQ   85 (271)
T ss_dssp             CCEEEEEEEECCTTC-TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG
T ss_pred             ceEEEEEEEEEeCCC-CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEccc
Confidence            369999999999531 12579999999999999999999999999999999999999999999999998853

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.69  E-value=4.5e-17  Score=141.49  Aligned_cols=65  Identities=25%  Similarity=0.537  Sum_probs=60.0

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  277 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g  277 (288)
                      ..+.++|+++.|++  +++++++|+||++++||++||+|||||||||++|+|+|+.+|++|+|.++|
T Consensus         5 ~~l~~~~l~~~y~~--~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g   69 (229)
T 2pze_A            5 TEVVMENVTAFWEE--GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG   69 (229)
T ss_dssp             EEEEEEEEEECSST--TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS
T ss_pred             ceEEEEEEEEEeCC--CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC
Confidence            36899999999953  246799999999999999999999999999999999999999999999987

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.69  E-value=4.5e-17  Score=149.92  Aligned_cols=69  Identities=32%  Similarity=0.593  Sum_probs=63.2

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..+.++|++|.|++   ++.+++|+||+|++||+++|+|||||||||++|+|+|+++|++|+|.++|.++.+
T Consensus        13 ~~l~~~~l~~~y~g---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~   81 (355)
T 1z47_A           13 MTIEFVGVEKIYPG---GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTD   81 (355)
T ss_dssp             EEEEEEEEEECCTT---STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred             ceEEEEEEEEEEcC---CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCc
Confidence            47999999999931   3569999999999999999999999999999999999999999999999998753

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.68  E-value=4.8e-17  Score=150.18  Aligned_cols=67  Identities=30%  Similarity=0.562  Sum_probs=62.2

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|++|.|+    ++.+++|+||++++||+++|+|||||||||++|+|+|+++|++|+|.++|.++.+
T Consensus         3 ~l~~~~l~~~y~----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~   69 (362)
T 2it1_A            3 EIKLENIVKKFG----NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTE   69 (362)
T ss_dssp             CEEEEEEEEESS----SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred             EEEEEeEEEEEC----CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCc
Confidence            378999999994    3569999999999999999999999999999999999999999999999998753

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.68  E-value=3.6e-17  Score=143.89  Aligned_cols=67  Identities=27%  Similarity=0.429  Sum_probs=61.9

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCC--CCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA--IKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~--~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|+++.|+    ++++++|+||++++||++||+|+|||||||++|+|+|+  .+|++|+|.++|.++.+
T Consensus         3 ~l~~~~l~~~y~----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~   71 (250)
T 2d2e_A            3 QLEIRDLWASID----GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILE   71 (250)
T ss_dssp             EEEEEEEEEEET----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTT
T ss_pred             eEEEEeEEEEEC----CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCC
Confidence            478999999995    35699999999999999999999999999999999998  89999999999998753

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.68  E-value=5.6e-17  Score=150.21  Aligned_cols=67  Identities=33%  Similarity=0.551  Sum_probs=62.5

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|++|.|+    ++.+++|+||+|++||+++|+|||||||||++|+|+|+++|++|+|.++|.++.+
T Consensus        11 ~l~~~~l~~~y~----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~   77 (372)
T 1v43_A           11 EVKLENLTKRFG----NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTY   77 (372)
T ss_dssp             CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred             eEEEEEEEEEEC----CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCC
Confidence            489999999995    3569999999999999999999999999999999999999999999999998753

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.68  E-value=5.1e-17  Score=150.61  Aligned_cols=67  Identities=33%  Similarity=0.591  Sum_probs=62.4

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|++|.|+    ++.+++|+||+|++||+++|+|||||||||++|+|+|+++|++|+|.++|.++.+
T Consensus         3 ~l~~~~l~~~y~----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~   69 (372)
T 1g29_1            3 GVRLVDVWKVFG----EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVAD   69 (372)
T ss_dssp             EEEEEEEEEEET----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEE
T ss_pred             EEEEEeEEEEEC----CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECcc
Confidence            478999999994    3579999999999999999999999999999999999999999999999998754

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.68  E-value=3.1e-17  Score=145.74  Aligned_cols=67  Identities=27%  Similarity=0.398  Sum_probs=61.7

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCC--CCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA--IKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~--~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|++|.|+    ++++++|+||+|++||++||+|+|||||||++|+|+|+  .+|++|+|.++|.++.+
T Consensus        20 ~l~~~~l~~~y~----~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~   88 (267)
T 2zu0_C           20 MLSIKDLHVSVE----DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLA   88 (267)
T ss_dssp             CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGG
T ss_pred             eEEEEeEEEEEC----CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCc
Confidence            599999999994    35799999999999999999999999999999999999  47999999999998753

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.68  E-value=4.1e-17  Score=147.49  Aligned_cols=68  Identities=25%  Similarity=0.414  Sum_probs=63.5

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|+++.|++   ++++++|+||.|++||++||+|+|||||||++|+|+|+++|++|+|.++|.++.+
T Consensus        53 ~i~~~~vs~~y~~---~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~  120 (306)
T 3nh6_A           53 RIEFENVHFSYAD---GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQ  120 (306)
T ss_dssp             CEEEEEEEEESST---TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTS
T ss_pred             eEEEEEEEEEcCC---CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEccc
Confidence            5999999999963   3579999999999999999999999999999999999999999999999999864

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.67  E-value=5.8e-17  Score=141.49  Aligned_cols=64  Identities=20%  Similarity=0.422  Sum_probs=59.2

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  277 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g  277 (288)
                      .+.++|+++.|++  +++++++|+||+|++||++||+|||||||||++|+|+|+++|++|+|.++|
T Consensus         3 ~l~~~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g   66 (237)
T 2cbz_A            3 SITVRNATFTWAR--SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG   66 (237)
T ss_dssp             CEEEEEEEEESCT--TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS
T ss_pred             eEEEEEEEEEeCC--CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence            4789999999953  235799999999999999999999999999999999999999999999988

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.67  E-value=4.5e-17  Score=150.03  Aligned_cols=67  Identities=30%  Similarity=0.623  Sum_probs=62.3

Q ss_pred             eEEEEeeeEEecccccccc--ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKP--AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~--av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|++|.|+    ++.  +++|+||+|++||+++|+|||||||||++|+|+|+++|++|+|.++|.++.+
T Consensus         3 ~l~i~~l~~~y~----~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~   71 (353)
T 1oxx_K            3 RIIVKNVSKVFK----KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVAS   71 (353)
T ss_dssp             CEEEEEEEEEEG----GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEE
T ss_pred             EEEEEeEEEEEC----CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcc
Confidence            378999999995    356  9999999999999999999999999999999999999999999999998754

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.67  E-value=6.4e-17  Score=148.64  Aligned_cols=64  Identities=27%  Similarity=0.488  Sum_probs=60.4

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.++|++|.|+    ++ +++|+||++++||+++|+|||||||||++|+|+|+++|++|+|.++|.++.
T Consensus         2 l~~~~l~~~y~----~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~   65 (348)
T 3d31_A            2 IEIESLSRKWK----NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT   65 (348)
T ss_dssp             EEEEEEEEECS----SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred             EEEEEEEEEEC----CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence            67899999994    35 999999999999999999999999999999999999999999999999875

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.65  E-value=1.5e-16  Score=148.20  Aligned_cols=69  Identities=28%  Similarity=0.443  Sum_probs=63.2

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..+.++|++|.|+.  +++.+++|+||+|++||+++|+|||||||||++|+|+|+++ ++|+|+++|.++.+
T Consensus        18 ~~i~~~~l~~~y~~--~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~   86 (390)
T 3gd7_A           18 GQMTVKDLTAKYTE--GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDS   86 (390)
T ss_dssp             CCEEEEEEEEESSS--SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTS
T ss_pred             CeEEEEEEEEEecC--CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCc
Confidence            46999999999953  34679999999999999999999999999999999999998 99999999998854

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.65  E-value=1.6e-16  Score=140.71  Aligned_cols=68  Identities=28%  Similarity=0.482  Sum_probs=60.1

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.++|++|.|++.++++++++|+||+++ ||++||+|+|||||||++|+|+|+. |++|+|.++|.++.+
T Consensus         2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~   69 (263)
T 2pjz_A            2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRK   69 (263)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGG
T ss_pred             EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcc
Confidence            6799999999531111579999999999 9999999999999999999999999 999999999988753

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.65  E-value=1.8e-16  Score=138.57  Aligned_cols=62  Identities=29%  Similarity=0.476  Sum_probs=58.0

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.++|++|.|++      .++|+||++++ |++||+|||||||||++|+|+|+.+|++|+|.++|.++.
T Consensus         2 l~~~~l~~~y~~------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   63 (240)
T 2onk_A            2 FLKVRAEKRLGN------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT   63 (240)
T ss_dssp             CEEEEEEEEETT------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred             EEEEEEEEEeCC------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence            578999999942      49999999999 999999999999999999999999999999999998875

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.65  E-value=2.1e-16  Score=139.76  Aligned_cols=69  Identities=19%  Similarity=0.314  Sum_probs=61.9

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|+++.|++. +.+++++|+||+|++||++||+|||||||||++|+|+|+++| +|+|.++|.++.+
T Consensus        17 ~l~i~~l~~~y~~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~   85 (260)
T 2ghi_A           17 NIEFSDVNFSYPKQ-TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNK   85 (260)
T ss_dssp             CEEEEEEEECCTTC-CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGG
T ss_pred             eEEEEEEEEEeCCC-CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhh
Confidence            59999999999642 124699999999999999999999999999999999999987 8999999998753

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.61  E-value=9e-16  Score=134.89  Aligned_cols=61  Identities=25%  Similarity=0.388  Sum_probs=56.8

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+.++|+++.        ++++|+||++++||++||+|||||||||++|+|+|+.+|+ |+|.++|.++.
T Consensus         4 ~l~~~~l~~~--------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~   64 (249)
T 2qi9_C            4 VMQLQDVAES--------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLE   64 (249)
T ss_dssp             EEEEEEEEET--------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGG
T ss_pred             EEEEEceEEE--------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECC
Confidence            4788898764        4999999999999999999999999999999999999999 99999999874

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.61  E-value=1e-15  Score=134.81  Aligned_cols=61  Identities=31%  Similarity=0.540  Sum_probs=56.3

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV  275 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i  275 (288)
                      .+.++|+++.|++   ++++++|+||+|++||++||+|||||||||++|+|+|+.+|++|+|.+
T Consensus         4 ~l~i~~l~~~y~~---~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~   64 (253)
T 2nq2_C            4 ALSVENLGFYYQA---ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV   64 (253)
T ss_dssp             EEEEEEEEEEETT---TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             eEEEeeEEEEeCC---CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence            5889999999951   356999999999999999999999999999999999999999999974

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.60  E-value=9.8e-16  Score=149.89  Aligned_cols=70  Identities=23%  Similarity=0.507  Sum_probs=64.7

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..++++|+++.|++  +++++++|+||++++||++||+|||||||||++|+|+|+++|++|+|.++|.++++
T Consensus       338 ~~i~~~~v~~~y~~--~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~  407 (578)
T 4a82_A          338 GRIDIDHVSFQYND--NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKD  407 (578)
T ss_dssp             CCEEEEEEEECSCS--SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGG
T ss_pred             CeEEEEEEEEEcCC--CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhh
Confidence            35999999999964  34679999999999999999999999999999999999999999999999999864

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.59  E-value=1.8e-15  Score=148.31  Aligned_cols=70  Identities=24%  Similarity=0.446  Sum_probs=64.9

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..++++|+++.|++  +++++++|+||++++||++||+|||||||||++|+|+|+++|++|+|.++|.|+++
T Consensus       340 ~~i~~~~v~~~y~~--~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~  409 (587)
T 3qf4_A          340 GSVSFENVEFRYFE--NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRT  409 (587)
T ss_dssp             CCEEEEEEEECSSS--SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGG
T ss_pred             CcEEEEEEEEEcCC--CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEccc
Confidence            36999999999964  34679999999999999999999999999999999999999999999999999864

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.59  E-value=2.1e-15  Score=147.62  Aligned_cols=70  Identities=23%  Similarity=0.413  Sum_probs=64.0

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..++++|+++.|++  +++++++|+||++++||++||+|||||||||++|+|+|+++|++|+|.++|.++++
T Consensus       340 ~~i~~~~v~~~y~~--~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~  409 (582)
T 3b60_A          340 GDLEFRNVTFTYPG--REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLRE  409 (582)
T ss_dssp             CCEEEEEEEECSSS--SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTT
T ss_pred             CcEEEEEEEEEcCC--CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccc
Confidence            35999999999963  12579999999999999999999999999999999999999999999999999854

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.58  E-value=2.1e-15  Score=147.62  Aligned_cols=70  Identities=30%  Similarity=0.512  Sum_probs=64.1

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..++++|+++.|++  +++++++|+||++++||++||+|||||||||++|+|+|+++|++|+|.++|.++.+
T Consensus       340 ~~i~~~~v~~~y~~--~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~  409 (582)
T 3b5x_A          340 GEVDVKDVTFTYQG--KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRD  409 (582)
T ss_pred             CeEEEEEEEEEcCC--CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhh
Confidence            46999999999963  22579999999999999999999999999999999999999999999999998853

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.57  E-value=2.2e-15  Score=147.91  Aligned_cols=68  Identities=28%  Similarity=0.456  Sum_probs=63.7

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .++++|+++.|++   ++++++|+||++++||++||+|||||||||++|+|+|+++|++|+|.++|.++++
T Consensus       354 ~i~~~~v~~~y~~---~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~  421 (598)
T 3qf4_B          354 EIEFKNVWFSYDK---KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRK  421 (598)
T ss_dssp             CEEEEEEECCSSS---SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGG
T ss_pred             eEEEEEEEEECCC---CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhh
Confidence            5999999999963   4579999999999999999999999999999999999999999999999999864

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.54  E-value=2.8e-15  Score=134.59  Aligned_cols=60  Identities=27%  Similarity=0.514  Sum_probs=47.8

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  277 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g  277 (288)
                      .+.++|+++.+      +++++|+||+|++||++||+|+|||||||++|+|+|+.+|++|+|.++|
T Consensus        40 ~l~~~~l~~~~------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g   99 (290)
T 2bbs_A           40 SLSFSNFSLLG------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG   99 (290)
T ss_dssp             ----------C------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS
T ss_pred             eEEEEEEEEcC------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC
Confidence            58899998743      4699999999999999999999999999999999999999999999987

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.48  E-value=4.2e-16  Score=127.81  Aligned_cols=62  Identities=21%  Similarity=0.133  Sum_probs=54.7

Q ss_pred             EeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         216 KRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       216 ~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ++++|.|+    ++.+++++||.+++||+++|+|+|||||||++|+|+|.. |++|+|.++|.++.+
T Consensus        11 ~~~~~~~g----~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~   72 (158)
T 1htw_A           11 EFSMLRFG----KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVE   72 (158)
T ss_dssp             HHHHHHHH----HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEE
T ss_pred             HHHHHHHH----HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeee
Confidence            34455663    357999999999999999999999999999999999999 999999999998853

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.47  E-value=6.7e-14  Score=148.28  Aligned_cols=70  Identities=21%  Similarity=0.405  Sum_probs=64.7

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .++.+|++..|+.. ++.++++|+||+|++||++||+|+|||||||++++|.|+++|++|+|.+||.|+++
T Consensus      1076 ~I~f~nVsf~Y~~~-~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~ 1145 (1321)
T 4f4c_A         1076 KVIFKNVRFAYPER-PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKT 1145 (1321)
T ss_dssp             CEEEEEEEECCTTS-CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTT
T ss_pred             eEEEEEEEEeCCCC-CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhh
Confidence            59999999999642 34579999999999999999999999999999999999999999999999999864

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.45  E-value=9.6e-14  Score=146.74  Aligned_cols=70  Identities=23%  Similarity=0.397  Sum_probs=64.2

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .++++|+++.|++. ++.++++|+||+|++||++||+|+|||||||++++|.|+++|++|+|.++|.|+++
T Consensus       387 ~i~~~~v~~~y~~~-~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~  456 (1284)
T 3g5u_A          387 NLEFKNIHFSYPSR-KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRT  456 (1284)
T ss_dssp             CEEEEEEEECCSST-TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGG
T ss_pred             eEEEEEEEEEcCCC-CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHh
Confidence            59999999999742 23579999999999999999999999999999999999999999999999998864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.44  E-value=8e-14  Score=142.24  Aligned_cols=64  Identities=33%  Similarity=0.592  Sum_probs=59.1

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  277 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g  277 (288)
                      .+.++|+++.|++  +++++++|+||.+++||++||+|+|||||||++|+|+|+.+|++|+|+++|
T Consensus       671 mL~v~nLs~~Y~g--~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~  734 (986)
T 2iw3_A          671 IVKVTNMEFQYPG--TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE  734 (986)
T ss_dssp             EEEEEEEEECCTT--CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred             eEEEEeeEEEeCC--CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence            5889999999953  235799999999999999999999999999999999999999999999986

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.43  E-value=1.1e-13  Score=146.38  Aligned_cols=70  Identities=21%  Similarity=0.459  Sum_probs=64.3

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .++++|+++.|++. ++.++++|+||+|++||++||+|+|||||||++++|.|+++|++|+|.++|.++++
T Consensus      1030 ~i~~~~v~~~y~~~-~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~ 1099 (1284)
T 3g5u_A         1030 NVQFSGVVFNYPTR-PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQ 1099 (1284)
T ss_dssp             CEEEEEEEBCCSCG-GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTS
T ss_pred             cEEEEEEEEECCCC-CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEccc
Confidence            59999999999742 23579999999999999999999999999999999999999999999999999864

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.41  E-value=1.1e-13  Score=146.53  Aligned_cols=70  Identities=21%  Similarity=0.386  Sum_probs=64.9

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .++++|++..|++. +++++++|+||+|++||.++|+|++||||||+++.|.|+++|++|+|.++|.|+++
T Consensus       415 ~I~~~nvsF~Y~~~-~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~  484 (1321)
T 4f4c_A          415 DITVENVHFTYPSR-PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRD  484 (1321)
T ss_dssp             CEEEEEEEECCSSS-TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTT
T ss_pred             cEEEEEeeeeCCCC-CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchh
Confidence            59999999999753 35689999999999999999999999999999999999999999999999999864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.34  E-value=1.1e-12  Score=127.21  Aligned_cols=66  Identities=24%  Similarity=0.328  Sum_probs=58.9

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ..+.+++++|.|++     ..+++.|++|++||++||+|+|||||||++|+|+|+.+|++|+|.+++..+.
T Consensus       268 ~~l~~~~l~~~~~~-----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~  333 (538)
T 3ozx_A          268 TKMKWTKIIKKLGD-----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILS  333 (538)
T ss_dssp             EEEEECCEEEEETT-----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEE
T ss_pred             ceEEEcceEEEECC-----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeE
Confidence            36889999999953     4578889999999999999999999999999999999999999998887653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.32  E-value=3.9e-13  Score=130.36  Aligned_cols=54  Identities=26%  Similarity=0.445  Sum_probs=49.2

Q ss_pred             EeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceE
Q psy7219         216 KRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA  273 (288)
Q Consensus       216 ~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i  273 (288)
                      +|++|.|++   ...+++|+| .|++||++||+|+|||||||++|+|+|+.+|++|++
T Consensus        25 ~~ls~~yg~---~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~   78 (538)
T 1yqt_A           25 EDCVHRYGV---NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGD   78 (538)
T ss_dssp             CCEEEECST---TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred             cCcEEEECC---ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcc
Confidence            689999953   225899999 999999999999999999999999999999999995

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.30  E-value=6.1e-13  Score=130.57  Aligned_cols=54  Identities=28%  Similarity=0.442  Sum_probs=49.1

Q ss_pred             EeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceE
Q psy7219         216 KRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA  273 (288)
Q Consensus       216 ~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i  273 (288)
                      +|++|.|++   ...+++|+| .+++||++||+|+|||||||++|+|+|+.+|++|++
T Consensus        95 ~~ls~~yg~---~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~  148 (607)
T 3bk7_A           95 EDCVHRYGV---NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCED  148 (607)
T ss_dssp             GSEEEECST---TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTT
T ss_pred             CCeEEEECC---CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCcc
Confidence            788999953   225899999 999999999999999999999999999999999996

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.29  E-value=1.3e-12  Score=124.44  Aligned_cols=53  Identities=25%  Similarity=0.175  Sum_probs=50.4

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..+++++||++++ |++||+|||||||||++++|+|+.+|++|+|.++|.++.+
T Consensus        17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~   69 (483)
T 3euj_A           17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAG   69 (483)
T ss_dssp             ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCS
T ss_pred             cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEccc
Confidence            4599999999999 9999999999999999999999999999999999998864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.26  E-value=3.9e-12  Score=123.26  Aligned_cols=59  Identities=36%  Similarity=0.512  Sum_probs=54.4

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV  275 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i  275 (288)
                      .+.++++++.|++     ..++++||.|++||++||+|+|||||||++|+|+|+.+|++|+|.+
T Consensus       287 ~l~~~~l~~~~~~-----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~  345 (538)
T 1yqt_A          287 LVTYPRLVKDYGS-----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW  345 (538)
T ss_dssp             EEEECCEEEEETT-----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC
T ss_pred             EEEEeeEEEEECC-----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence            6889999999942     3689999999999999999999999999999999999999999876

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.26  E-value=3.9e-12  Score=124.82  Aligned_cols=59  Identities=36%  Similarity=0.508  Sum_probs=54.5

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV  275 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i  275 (288)
                      .+.++++++.|++     ..++++||.+++||++||+|+|||||||++|+|+|+.+|++|+|.+
T Consensus       357 ~l~~~~l~~~~~~-----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~  415 (607)
T 3bk7_A          357 LVEYPRLVKDYGS-----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW  415 (607)
T ss_dssp             EEEECCEEEECSS-----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC
T ss_pred             EEEEeceEEEecc-----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence            6889999999942     3689999999999999999999999999999999999999999976

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.24  E-value=9e-13  Score=121.07  Aligned_cols=65  Identities=17%  Similarity=0.265  Sum_probs=59.2

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS  279 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~  279 (288)
                      ..+.+++++|.|..   +..|++++ |.|.+||++||+|+|||||||++++|+|..+|+.|.+.+.|.+
T Consensus        44 ~~i~~~~l~~~~~t---g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~  108 (347)
T 2obl_A           44 DPLLRQVIDQPFIL---GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER  108 (347)
T ss_dssp             CSTTCCCCCSEECC---SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred             CCeeecccceecCC---CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc
Confidence            46788999999962   35699999 9999999999999999999999999999999999999998875

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.23  E-value=2.3e-12  Score=110.67  Aligned_cols=49  Identities=20%  Similarity=0.134  Sum_probs=34.1

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +..++|+||.+++||++||+|||||||||++++|+|++ |  |++.+ |.++.
T Consensus        10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~   58 (218)
T 1z6g_A           10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCT   58 (218)
T ss_dssp             ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEE
T ss_pred             cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eeccc
Confidence            35799999999999999999999999999999999999 6  99999 76653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.15  E-value=7.6e-12  Score=122.71  Aligned_cols=59  Identities=31%  Similarity=0.553  Sum_probs=47.7

Q ss_pred             CeEEEEee--------eEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceE
Q psy7219         211 DVLVVKRL--------FKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA  273 (288)
Q Consensus       211 ~~l~~~~l--------~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i  273 (288)
                      +++.+.||        ++.|+.   ....+++++ .+++||++||+|||||||||++|+|+|+.+|++|++
T Consensus        68 ~~i~i~nl~~~~~~~~~~~Y~~---~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i  134 (608)
T 3j16_B           68 DAIQIINLPTNLEAHVTHRYSA---NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF  134 (608)
T ss_dssp             CCEEEEEESSSSSTTEEEECST---TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred             cceEEecCChhhcCCeEEEECC---CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence            45666555        455532   234677766 689999999999999999999999999999999998

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.14  E-value=2.7e-12  Score=121.42  Aligned_cols=64  Identities=20%  Similarity=0.324  Sum_probs=58.8

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~  278 (288)
                      ..+.++++++.|..   +..+++++ |.+.+||++||+|+|||||||++++|+|..+|++|.+.++|.
T Consensus       130 ~~l~~~~v~~~~~t---g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~  193 (438)
T 2dpy_A          130 NPLQRTPIEHVLDT---GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE  193 (438)
T ss_dssp             CTTTSCCCCSBCCC---SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred             CceEEeccceecCC---CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence            45778899999952   35699999 999999999999999999999999999999999999999998

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.13  E-value=3.8e-12  Score=119.27  Aligned_cols=52  Identities=21%  Similarity=0.307  Sum_probs=47.5

Q ss_pred             ccceeeeEEEEeCCC--------------------EEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219         229 KPAVNQISFGVGRGE--------------------CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  280 (288)
Q Consensus       229 ~~av~~is~~v~~Ge--------------------~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i  280 (288)
                      +.+++++|+.+++||                    ++||+|+|||||||++|+|+|+.+|++|+|.++|.++
T Consensus        36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~  107 (413)
T 1tq4_A           36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEV  107 (413)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC---
T ss_pred             HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeec
Confidence            469999999999999                    9999999999999999999999999999999998765

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.11  E-value=5e-11  Score=118.41  Aligned_cols=65  Identities=23%  Similarity=0.330  Sum_probs=41.1

Q ss_pred             EeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHH---------------------HHHhCCCCCC-----
Q psy7219         216 KRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTF---------------------KMLTGAIKPT-----  269 (288)
Q Consensus       216 ~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~---------------------~~l~G~~~pt-----  269 (288)
                      +++.|.|... ..+.+++|+||+|++||++||+|||||||||++                     +++.|+.+|+     
T Consensus        19 ~~~~~~~~~~-~~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~   97 (670)
T 3ux8_A           19 SHMDKIIVKG-ARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIE   97 (670)
T ss_dssp             ---CEEEEEE-ECSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEE
T ss_pred             CCcceEEEcC-CCccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCcccee
Confidence            4444444321 235699999999999999999999999999998                     8999999999     


Q ss_pred             --CceEEEcccccc
Q psy7219         270 --SGNAYVMNHSIR  281 (288)
Q Consensus       270 --~G~i~i~g~~i~  281 (288)
                        .|.+.++|.+..
T Consensus        98 ~~~~~i~~~~~~~~  111 (670)
T 3ux8_A           98 GLSPAISIDQKTTS  111 (670)
T ss_dssp             SCCCEEEESSCC--
T ss_pred             ccccceEecCchhh
Confidence              455666665543

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.10  E-value=1.2e-11  Score=111.53  Aligned_cols=52  Identities=19%  Similarity=0.347  Sum_probs=48.0

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +++++||.+++||+++++|+||||||||+++|+|.++|++|+|.++|.|+.+
T Consensus        89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r  140 (302)
T 3b9q_A           89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR  140 (302)
T ss_dssp             CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred             cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            4567899999999999999999999999999999999999999999998753

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.09  E-value=2.7e-12  Score=109.69  Aligned_cols=42  Identities=24%  Similarity=0.094  Sum_probs=39.0

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEE
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY  274 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~  274 (288)
                      ++.+++|+    ++||++||+|||||||||++|+|+|+ +|++|+|.
T Consensus        12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~   53 (208)
T 3b85_A           12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS   53 (208)
T ss_dssp             HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS
T ss_pred             HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee
Confidence            35789995    89999999999999999999999999 99999994

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.09  E-value=1.1e-10  Score=119.21  Aligned_cols=51  Identities=25%  Similarity=0.460  Sum_probs=45.9

Q ss_pred             CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219         210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG  264 (288)
Q Consensus       210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G  264 (288)
                      +..+...+++|.|+    ++.+++|+||.+++||++||+|+|||||||++|+|+|
T Consensus       433 ~~~L~~~~ls~~yg----~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          433 GEDLCNCEFSLAYG----AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             SCEEEEEEEEEEET----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceeEEeeEEEEEC----CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            34677889999995    3579999999999999999999999999999999994

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.07  E-value=1.1e-11  Score=119.84  Aligned_cols=54  Identities=22%  Similarity=0.238  Sum_probs=50.6

Q ss_pred             cccceeeeEE-EEeCCCEEEEEcCCCCChHHHHHH--HhCCCCCCCceEEEcccccc
Q psy7219         228 TKPAVNQISF-GVGRGECFGLLGLNGAGKTTTFKM--LTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       228 ~~~av~~is~-~v~~Ge~~gllG~NGaGKTT~~~~--l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +.++++++++ ++++||+++|+|+|||||||++++  ++|..+|++|.++++|.+..
T Consensus        24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~   80 (525)
T 1tf7_A           24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETP   80 (525)
T ss_dssp             CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH
T ss_pred             CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCH
Confidence            4679999999 999999999999999999999999  78999999999999998853

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.07  E-value=2.1e-12  Score=116.36  Aligned_cols=57  Identities=16%  Similarity=0.252  Sum_probs=50.9

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  277 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g  277 (288)
                      +.++++++.|+     +++++++||+|++||+++|+|||||||||++++|+|++   +|+|...+
T Consensus       102 i~~~~vs~~y~-----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v  158 (305)
T 2v9p_A          102 FNYQNIELITF-----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFA  158 (305)
T ss_dssp             HHHTTCCHHHH-----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGG
T ss_pred             EEEEEEEEEcC-----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEe
Confidence            56678888884     46999999999999999999999999999999999999   89997654

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.05  E-value=3e-12  Score=115.64  Aligned_cols=64  Identities=19%  Similarity=0.271  Sum_probs=58.1

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEE-------------------eCCCEEEEEcCCCCChHHHHHHHhCCCC--CC
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGV-------------------GRGECFGLLGLNGAGKTTTFKMLTGAIK--PT  269 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v-------------------~~Ge~~gllG~NGaGKTT~~~~l~G~~~--pt  269 (288)
                      +.+.+++++|.|.      ++++++++.+                   ++|+++||+|+|||||||++++|+|+.+  |+
T Consensus        36 ~~i~~~~v~~~y~------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~  109 (308)
T 1sq5_A           36 EDLSLEEVAEIYL------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE  109 (308)
T ss_dssp             TTCCHHHHHHTHH------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred             cccchHhHHHHHH------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence            4588899999993      4889999988                   9999999999999999999999999988  99


Q ss_pred             CceEEE---ccccc
Q psy7219         270 SGNAYV---MNHSI  280 (288)
Q Consensus       270 ~G~i~i---~g~~i  280 (288)
                      +|++.+   +|...
T Consensus       110 ~G~i~vi~~d~~~~  123 (308)
T 1sq5_A          110 HRRVELITTDGFLH  123 (308)
T ss_dssp             CCCEEEEEGGGGBC
T ss_pred             CCeEEEEecCCccC
Confidence            999999   88765

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.04  E-value=1.9e-11  Score=111.51  Aligned_cols=49  Identities=24%  Similarity=0.276  Sum_probs=47.4

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS  279 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~  279 (288)
                      +++++++.+++||+++++|+|||||||++++|+|+++|++|.+.++|.+
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~  208 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE  208 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee
Confidence            7899999999999999999999999999999999999999999999875

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.04  E-value=1.8e-11  Score=108.16  Aligned_cols=50  Identities=22%  Similarity=0.246  Sum_probs=46.9

Q ss_pred             cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC-CceEEEcccccc
Q psy7219         230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNHSIR  281 (288)
Q Consensus       230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt-~G~i~i~g~~i~  281 (288)
                      ++++++|  +++||+++|+|||||||||++++|.|+++|+ +|+|.++|.++.
T Consensus        15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~   65 (261)
T 2eyu_A           15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE   65 (261)
T ss_dssp             THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCC
T ss_pred             HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcce
Confidence            4899999  9999999999999999999999999999998 999999998764

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.03  E-value=2.6e-12  Score=117.53  Aligned_cols=66  Identities=20%  Similarity=0.255  Sum_probs=58.7

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ++++++++.|.    .+.+++++|+.+++|+++||+|+|||||||++++|+|..+|++|++.+.|.++.+
T Consensus        30 ie~~~~~~~~~----~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~   95 (337)
T 2qm8_A           30 AESRRADHRAA----VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS   95 (337)
T ss_dssp             HTCSSHHHHHH----HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred             HeeCCcccccC----hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence            55667777774    2569999999999999999999999999999999999999999999999988754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.00  E-value=1.5e-10  Score=113.43  Aligned_cols=54  Identities=35%  Similarity=0.552  Sum_probs=47.2

Q ss_pred             EeeeEEeccccccccceeeeEEEEeCC-----CEEEEEcCCCCChHHHHHHHhCCCCCCCce
Q psy7219         216 KRLFKIYANSKDTKPAVNQISFGVGRG-----ECFGLLGLNGAGKTTTFKMLTGAIKPTSGN  272 (288)
Q Consensus       216 ~~l~k~y~~~~~~~~av~~is~~v~~G-----e~~gllG~NGaGKTT~~~~l~G~~~pt~G~  272 (288)
                      +++...|++   ...+++++||++.+|     |++||+|+|||||||++|+|+|+.+|++|+
T Consensus       350 ~~~~~~y~~---~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~  408 (608)
T 3j16_B          350 ASRAFSYPS---LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ  408 (608)
T ss_dssp             SSSCCEECC---EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred             cceeEEecC---cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence            456667753   245899999999999     889999999999999999999999999997

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.00  E-value=5.8e-11  Score=109.54  Aligned_cols=47  Identities=21%  Similarity=0.174  Sum_probs=45.3

Q ss_pred             eeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219         232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       232 v~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~  278 (288)
                      ++++|+.|++||.++|+|+|||||||++++|.|+++|++|.|.++|.
T Consensus       165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~  211 (361)
T 2gza_A          165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV  211 (361)
T ss_dssp             HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS
T ss_pred             HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc
Confidence            49999999999999999999999999999999999999999999975

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.00  E-value=5.1e-11  Score=109.73  Aligned_cols=50  Identities=20%  Similarity=0.365  Sum_probs=46.7

Q ss_pred             eeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         233 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       233 ~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.+||.+++||+++++|+||||||||++.|+|.++|++|+|.++|.|+.+
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r  197 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR  197 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence            46888999999999999999999999999999999999999999998753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.98  E-value=1.3e-10  Score=112.51  Aligned_cols=50  Identities=32%  Similarity=0.527  Sum_probs=41.2

Q ss_pred             eeeeEEEE-eCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceE-----------EEcccccc
Q psy7219         232 VNQISFGV-GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA-----------YVMNHSIR  281 (288)
Q Consensus       232 v~~is~~v-~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i-----------~i~g~~i~  281 (288)
                      ++--.+-+ ++||++||+|||||||||++|+|+|+++|++|++           .++|.++.
T Consensus        14 f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~   75 (538)
T 3ozx_A           14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIY   75 (538)
T ss_dssp             CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTH
T ss_pred             eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHH
Confidence            33334444 4999999999999999999999999999999998           56776653

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.98  E-value=1.6e-10  Score=99.51  Aligned_cols=44  Identities=23%  Similarity=0.147  Sum_probs=27.8

Q ss_pred             cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh-CCC------------CCCCceE
Q psy7219         230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT-GAI------------KPTSGNA  273 (288)
Q Consensus       230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~-G~~------------~pt~G~i  273 (288)
                      .-.+++||.+++|+++||+|||||||||++++|+ |..            +|+.|++
T Consensus        15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~   71 (231)
T 3lnc_A           15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK   71 (231)
T ss_dssp             -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC
T ss_pred             cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc
Confidence            3578899999999999999999999999999999 998            7777765

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.95  E-value=1.8e-10  Score=97.68  Aligned_cols=38  Identities=29%  Similarity=0.358  Sum_probs=26.4

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      ..+.++|  ..|++||++||+|||||||||++|+|+|+.+
T Consensus         8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A            8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             -------------CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4567888  7999999999999999999999999999986

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=98.94  E-value=5.7e-11  Score=112.93  Aligned_cols=56  Identities=16%  Similarity=0.154  Sum_probs=50.4

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc-e-EEEcc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-N-AYVMN  277 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G-~-i~i~g  277 (288)
                      .+.++|++|.|+          ++||.+++||+++|+|+|||||||++|+|+|+.+|++| + ++++|
T Consensus       118 mi~~~nl~~~y~----------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg  175 (460)
T 2npi_A          118 MKYIYNLHFMLE----------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL  175 (460)
T ss_dssp             HHHHHHHHHHHH----------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC
T ss_pred             hhhhhhhhehhh----------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC
Confidence            456777777762          69999999999999999999999999999999999999 9 99988

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.93  E-value=1.4e-10  Score=110.40  Aligned_cols=50  Identities=18%  Similarity=0.187  Sum_probs=46.8

Q ss_pred             eeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       232 v~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      -+++||.+++|++++|+|+||||||||+++|+|.++|++|+|.++|.++.
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~  332 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF  332 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTT
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCccc
Confidence            46899999999999999999999999999999999999999999887764

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.90  E-value=3.5e-10  Score=98.42  Aligned_cols=40  Identities=18%  Similarity=0.234  Sum_probs=26.0

Q ss_pred             ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       227 ~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +++.+++|+||++++|+++||+|+|||||||++++|+|..
T Consensus        10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             -------------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            4567999999999999999999999999999999999965

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.89  E-value=2.5e-11  Score=109.93  Aligned_cols=57  Identities=19%  Similarity=0.248  Sum_probs=48.0

Q ss_pred             CCCeEEEEeeeEEeccccccccceeeeEEE-----------------------EeCCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219         209 SGDVLVVKRLFKIYANSKDTKPAVNQISFG-----------------------VGRGECFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       209 ~~~~l~~~~l~k~y~~~~~~~~av~~is~~-----------------------v~~Ge~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      .++.+.+++|+|.|.      ++++++++.                       +++|+++||+|+|||||||++++|+|+
T Consensus        40 ~~~~i~~~~v~~~y~------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           40 LGEQIDLLEVEEVYL------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             TTCCCCHHHHHHTHH------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEeeehhhhhh------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhh
Confidence            355788999999994      355555443                       899999999999999999999999999


Q ss_pred             CCCCCc
Q psy7219         266 IKPTSG  271 (288)
Q Consensus       266 ~~pt~G  271 (288)
                      .+|++|
T Consensus       114 l~~~~G  119 (312)
T 3aez_A          114 LARWDH  119 (312)
T ss_dssp             HHTSTT
T ss_pred             ccccCC
Confidence            999877

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.85  E-value=3.8e-10  Score=94.93  Aligned_cols=57  Identities=19%  Similarity=0.307  Sum_probs=37.0

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC-----CCCCceEEE
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI-----KPTSGNAYV  275 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~-----~pt~G~i~i  275 (288)
                      .+.++++++.|+     .+++++  |.+++|++++|+|+|||||||+++.|+|..     .|+.|+...
T Consensus         3 ~l~~~~~~~~~~-----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~   64 (210)
T 1pui_A            3 NLNYQQTHFVMS-----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL   64 (210)
T ss_dssp             --------CEEE-----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred             chhhhhhhheee-----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence            367899999994     257888  889999999999999999999999999998     899998765

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.81  E-value=5.9e-10  Score=107.24  Aligned_cols=50  Identities=16%  Similarity=0.179  Sum_probs=47.5

Q ss_pred             cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219         230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS  279 (288)
Q Consensus       230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~  279 (288)
                      .+++++++.+++|+.++++|+||||||||+++|+|+.+|++|.+.+.|.+
T Consensus       248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~  297 (511)
T 2oap_1          248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR  297 (511)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence            47899999999999999999999999999999999999999999998865

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.81  E-value=8.9e-11  Score=101.51  Aligned_cols=57  Identities=26%  Similarity=0.280  Sum_probs=42.2

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  280 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i  280 (288)
                      .+.++|+.+.|.    .       ++++.+ |+++|+|||||||||++++|+|...|++|+|.++|.++
T Consensus         9 ~l~l~~~~~~~~----~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~   65 (227)
T 1qhl_A            9 SLTLINWNGFFA----R-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE   65 (227)
T ss_dssp             EEEEEEETTEEE----E-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred             EEEEEeeecccC----C-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence            467888766552    1       456666 99999999999999999999999999999999999887

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.80  E-value=2e-09  Score=106.91  Aligned_cols=53  Identities=17%  Similarity=0.258  Sum_probs=43.7

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh----------------------CCCCCCCceEEEccccccc
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT----------------------GAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~----------------------G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..+++|+||+|++||++||+|||||||||+++++.                      |...+ +|.+.++|.++..
T Consensus       335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~  409 (670)
T 3ux8_A          335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGR  409 (670)
T ss_dssp             STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCS
T ss_pred             ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCC
Confidence            46999999999999999999999999999998753                      44433 4578888877643

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.80  E-value=1e-09  Score=98.66  Aligned_cols=47  Identities=15%  Similarity=0.225  Sum_probs=33.2

Q ss_pred             EEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE---ccccccch
Q psy7219         237 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV---MNHSIRDS  283 (288)
Q Consensus       237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i---~g~~i~~~  283 (288)
                      |.+.+||+++++|+|||||||++++|+|+.+|++|++.+   +|.++.+.
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~  213 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTT  213 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCS
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceee
Confidence            456689999999999999999999999999999999999   88887543

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.80  E-value=1.1e-09  Score=94.11  Aligned_cols=44  Identities=18%  Similarity=0.196  Sum_probs=37.4

Q ss_pred             EEeCCCEEEEEcCCCCChHHHHHHHhCCCCC--CCceEEEcccccc
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSIR  281 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p--t~G~i~i~g~~i~  281 (288)
                      ..++|++++|+|||||||||++++|+|..+|  .+|++.+.+.+.+
T Consensus        12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~   57 (219)
T 1s96_A           12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPR   57 (219)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCC
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCC
Confidence            4689999999999999999999999999986  6899998887654

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.80  E-value=1.4e-09  Score=97.91  Aligned_cols=41  Identities=24%  Similarity=0.301  Sum_probs=39.5

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +||+++++|||||||||++++|+|.++|++|++.+.|.|+.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~  141 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF  141 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCC
Confidence            79999999999999999999999999999999999999874

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.78  E-value=1.8e-09  Score=97.03  Aligned_cols=55  Identities=20%  Similarity=0.195  Sum_probs=22.6

Q ss_pred             EeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCC-CCCCCceEEEcccccc
Q psy7219         216 KRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA-IKPTSGNAYVMNHSIR  281 (288)
Q Consensus       216 ~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~-~~pt~G~i~i~g~~i~  281 (288)
                      ++|+|.|+    ++.++++++|+|      +|+|+|||||||++++|.|. ..|++| +.++|.++.
T Consensus         2 ~~l~~~~~----~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~   57 (301)
T 2qnr_A            2 SNLPNQVH----RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIE   57 (301)
T ss_dssp             --------------------CEEE------EEEEETTSSHHHHHHHHHC------------------
T ss_pred             CCCcceEC----CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccC
Confidence            46888885    467999999998      99999999999999999998 889999 777666543

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.75  E-value=1.6e-09  Score=98.64  Aligned_cols=43  Identities=23%  Similarity=0.277  Sum_probs=40.7

Q ss_pred             EeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .++|++++++|+||||||||+++|+|.++|++|++.+.|.|+.
T Consensus       126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~  168 (328)
T 3e70_C          126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF  168 (328)
T ss_dssp             SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence            4689999999999999999999999999999999999999874

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.75  E-value=3.4e-09  Score=90.30  Aligned_cols=43  Identities=16%  Similarity=0.243  Sum_probs=37.0

Q ss_pred             EEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-------CCceEEEccccc
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-------TSGNAYVMNHSI  280 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-------t~G~i~i~g~~i  280 (288)
                      ++++||+++|+|||||||||++++|+|...+       ..|.+++++.+.
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~   70 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT   70 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence            7999999999999999999999999996555       445888888763

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.74  E-value=9.9e-10  Score=98.05  Aligned_cols=51  Identities=18%  Similarity=0.182  Sum_probs=45.4

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc-eEEEcccc
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAYVMNHS  279 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G-~i~i~g~~  279 (288)
                      .++++++++++++||+++|+|+|||||||++++|+|...|++| .+.+.+.+
T Consensus        22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e   73 (296)
T 1cr0_A           22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE   73 (296)
T ss_dssp             CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred             HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence            5699999999999999999999999999999999999999988 67554333

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=98.72  E-value=2.3e-09  Score=99.96  Aligned_cols=53  Identities=21%  Similarity=0.324  Sum_probs=45.8

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC--------------------------------------CCC
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK--------------------------------------PTS  270 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~--------------------------------------pt~  270 (288)
                      ..++++++|.+.+| +.+|+|+|||||||++++|.++..                                      +.+
T Consensus        48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~  126 (415)
T 4aby_A           48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR  126 (415)
T ss_dssp             ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred             ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence            35899999999999 999999999999999999955543                                      557


Q ss_pred             ceEEEccccccc
Q psy7219         271 GNAYVMNHSIRD  282 (288)
Q Consensus       271 G~i~i~g~~i~~  282 (288)
                      |+++++|.+++.
T Consensus       127 ~~i~ing~~~~~  138 (415)
T 4aby_A          127 GAARLSGEVVSV  138 (415)
T ss_dssp             EEEEETTEEECH
T ss_pred             eEEEECCEECCH
Confidence            889999998753

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.71  E-value=5.6e-10  Score=104.81  Aligned_cols=51  Identities=16%  Similarity=0.212  Sum_probs=45.3

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ..+++++ + .++|++++++||||||||||+++|.|+.+|++|+|.+.|.++.
T Consensus       156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie  206 (418)
T 1p9r_A          156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE  206 (418)
T ss_dssp             HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCC
T ss_pred             HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccch
Confidence            3467777 4 3899999999999999999999999999999999999988774

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.68  E-value=1.8e-09  Score=101.24  Aligned_cols=49  Identities=20%  Similarity=0.301  Sum_probs=39.4

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCE--EEEEcCCCCChHHHHHHHhCCC
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGEC--FGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~--~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .+.+++ ++.|+    +.+ ++++||.+++|++  +||+|+|||||||++++|+|..
T Consensus        16 ~l~~~~-~~~y~----~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           16 TVPLAG-HVGFD----SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             -CCCCC-CC-CC------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             eEEEee-EEEEC----Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            455566 77784    345 9999999999999  9999999999999999999984

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.66  E-value=1.8e-09  Score=97.28  Aligned_cols=47  Identities=9%  Similarity=0.101  Sum_probs=27.5

Q ss_pred             EEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE---ccccccch
Q psy7219         237 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV---MNHSIRDS  283 (288)
Q Consensus       237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i---~g~~i~~~  283 (288)
                      +.+.+||+++++|+||+||||++|+|+|..+|++|++.+   +|.++++.
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~  217 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRH  217 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCC
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccH
Confidence            446789999999999999999999999999999999998   88776543

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.66  E-value=4.6e-09  Score=89.00  Aligned_cols=43  Identities=19%  Similarity=0.196  Sum_probs=38.6

Q ss_pred             EeCCCEEEEEcCCCCChHHHHHHHhCCCCC---CCceEEEcccccc
Q psy7219         239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKP---TSGNAYVMNHSIR  281 (288)
Q Consensus       239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p---t~G~i~i~g~~i~  281 (288)
                      .++||++||+|+|||||||++++|+|.++|   +.|.+.++|+.+.
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~   64 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLD   64 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCC
Confidence            468999999999999999999999999985   5789999988764

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.66  E-value=1.7e-08  Score=102.02  Aligned_cols=45  Identities=18%  Similarity=0.305  Sum_probs=39.2

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHH-HhC
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKM-LTG  264 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~-l~G  264 (288)
                      ..+.++++++         .+++|+||+|++||++||+|+||||||||+++ |.|
T Consensus       501 ~~L~v~~l~~---------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g  546 (842)
T 2vf7_A          501 GWLELNGVTR---------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVD  546 (842)
T ss_dssp             CEEEEEEEEE---------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHH
T ss_pred             ceEEEEeeee---------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHH
Confidence            3588888753         27999999999999999999999999999997 663

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.65  E-value=1e-08  Score=92.18  Aligned_cols=45  Identities=18%  Similarity=0.135  Sum_probs=35.4

Q ss_pred             EEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE---ccccccch
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV---MNHSIRDS  283 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i---~g~~i~~~  283 (288)
                      .+.+|++.+++|+|||||||++|+|+ ..+|++|+|.+   +|.++.+.
T Consensus       161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~  208 (302)
T 2yv5_A          161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTG  208 (302)
T ss_dssp             HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCC
T ss_pred             hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceee
Confidence            45679999999999999999999999 99999999999   88887654

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.63  E-value=1.7e-09  Score=99.71  Aligned_cols=46  Identities=22%  Similarity=0.316  Sum_probs=42.6

Q ss_pred             ceeeeEEEEeC--CCEEEEEcCCCCChHHHHHHHhCCCCCCC----ceEEEc
Q psy7219         231 AVNQISFGVGR--GECFGLLGLNGAGKTTTFKMLTGAIKPTS----GNAYVM  276 (288)
Q Consensus       231 av~~is~~v~~--Ge~~gllG~NGaGKTT~~~~l~G~~~pt~----G~i~i~  276 (288)
                      ..+.+++.|++  ||.++|+|+|||||||++|+|+|+++|++    |+++++
T Consensus       157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~  208 (365)
T 1lw7_A          157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVF  208 (365)
T ss_dssp             GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHH
T ss_pred             ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence            35679999999  99999999999999999999999999999    998874

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.61  E-value=2.4e-09  Score=105.22  Aligned_cols=64  Identities=19%  Similarity=0.385  Sum_probs=36.6

Q ss_pred             eEEEEeeeEEeccccccccceeee----------EEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-CCceEEEccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQI----------SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAYVMNHSI  280 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~i----------s~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-t~G~i~i~g~~i  280 (288)
                      .+.++++++.|+.+  .++.++.+          +++++.   +||+|+|||||||++++|+|+..| ++|.+.++|.++
T Consensus        10 ~i~~~~l~~~~~~~--~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i   84 (608)
T 3szr_A           10 SVAENNLCSQYEEK--VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVL   84 (608)
T ss_dssp             ----------CHHH--HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEE
T ss_pred             hhhhhhhhHHHHHH--HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEE
Confidence            46677888888531  12233322          356654   999999999999999999999988 799999999886

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.58  E-value=2.2e-09  Score=90.38  Aligned_cols=53  Identities=21%  Similarity=0.276  Sum_probs=46.9

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceE--EEccccccc
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA--YVMNHSIRD  282 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i--~i~g~~i~~  282 (288)
                      ..+.++.++..++|++++|+|+|||||||+.++|++... .+|.+  +++|.++..
T Consensus        12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~~   66 (200)
T 3uie_A           12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVRH   66 (200)
T ss_dssp             CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHTT
T ss_pred             cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhhh
Confidence            457788888889999999999999999999999999988 78988  999887754

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.58  E-value=2.8e-08  Score=91.24  Aligned_cols=49  Identities=14%  Similarity=0.174  Sum_probs=35.9

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-CCCceEEEc-cccc
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-PTSGNAYVM-NHSI  280 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-pt~G~i~i~-g~~i  280 (288)
                      -++++++. .+||+++|+|+|||||||++++|+|..+ |++|+|.++ |.+.
T Consensus       205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~  255 (358)
T 2rcn_A          205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQ  255 (358)
T ss_dssp             THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC----------
T ss_pred             CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCc
Confidence            46666664 4899999999999999999999999999 999999986 6543

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.57  E-value=2.5e-08  Score=93.51  Aligned_cols=51  Identities=18%  Similarity=0.110  Sum_probs=40.2

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG  271 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G  271 (288)
                      ..+.++++++.|+    ++.+++|++|+|      +|+|+|||||||++++|+|...|+.|
T Consensus        10 ~~l~~~~l~~~y~----~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~   60 (418)
T 2qag_C           10 GYVGFANLPNQVY----RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE   60 (418)
T ss_dssp             -----CCCCCCTT----TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC
T ss_pred             CcEEEEecceeEC----CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC
Confidence            3588999999995    367999999998      99999999999999999999886554

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.56  E-value=5.1e-09  Score=89.06  Aligned_cols=53  Identities=15%  Similarity=0.110  Sum_probs=46.9

Q ss_pred             cccceeeeEE-EEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219         228 TKPAVNQISF-GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  280 (288)
Q Consensus       228 ~~~av~~is~-~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i  280 (288)
                      +.++++++.. ++++||+++|+|+|||||||+++.+++...+++|.+.+.+.+.
T Consensus         8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~   61 (235)
T 2w0m_A            8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE   61 (235)
T ss_dssp             SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred             CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence            3568999998 8999999999999999999999999999888888888766554

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.56  E-value=5.7e-09  Score=96.60  Aligned_cols=48  Identities=23%  Similarity=0.258  Sum_probs=42.4

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC-CceEEEccccc
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNHSI  280 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt-~G~i~i~g~~i  280 (288)
                      ++++++  +++|++++++|||||||||+++.|.|+++|+ +|+|...|.++
T Consensus       127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~  175 (372)
T 2ewv_A          127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI  175 (372)
T ss_dssp             SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSC
T ss_pred             HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccH
Confidence            566665  8899999999999999999999999999998 89998776654

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.55  E-value=4e-09  Score=92.39  Aligned_cols=53  Identities=23%  Similarity=0.369  Sum_probs=35.7

Q ss_pred             CeEEEEee-eEEeccccccccceeeeEEEEeC---CCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         211 DVLVVKRL-FKIYANSKDTKPAVNQISFGVGR---GECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       211 ~~l~~~~l-~k~y~~~~~~~~av~~is~~v~~---Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      ..+.++|+ +|.|.   +++.+++|+||.|++   |++++|+|++||||||+.++|++..
T Consensus        16 ~~l~~~~~~~~~~~---~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           16 ALLETGSLLHSPFD---EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             -------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CceEEcceeeEEec---CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            36889999 99993   235799999999999   9999999999999999999998744

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.45  E-value=6.3e-08  Score=81.31  Aligned_cols=48  Identities=17%  Similarity=0.189  Sum_probs=35.0

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+-+....-++|++++|+|+|||||||+.++|+|..    |.+.++|.++..
T Consensus        18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~   65 (200)
T 4eun_A           18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS   65 (200)
T ss_dssp             ----------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC
T ss_pred             hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc
Confidence            333344566799999999999999999999999987    999999988753

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.43  E-value=1.2e-07  Score=98.05  Aligned_cols=54  Identities=24%  Similarity=0.316  Sum_probs=41.7

Q ss_pred             CeEEEEe-----eeEEeccccccccceeeeEEEEeC-------CCEEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219         211 DVLVVKR-----LFKIYANSKDTKPAVNQISFGVGR-------GECFGLLGLNGAGKTTTFKMLTGAIKP  268 (288)
Q Consensus       211 ~~l~~~~-----l~k~y~~~~~~~~av~~is~~v~~-------Ge~~gllG~NGaGKTT~~~~l~G~~~p  268 (288)
                      ..+.+++     +.+.|.+   ++.+++|++|++++       |++++|+|||||||||++|++ |+..+
T Consensus       749 ~~l~i~~~rHP~l~~~~~~---~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~  814 (1022)
T 2o8b_B          749 PFLELKGSRHPCITKTFFG---DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV  814 (1022)
T ss_dssp             CCEEEEEECCCC------C---CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH
T ss_pred             ceEEEEeccccEEEEEecC---CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH
Confidence            3588999     8888842   35799999999987       999999999999999999999 87643

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.43  E-value=1.3e-07  Score=96.33  Aligned_cols=44  Identities=20%  Similarity=0.289  Sum_probs=37.9

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      ..+.++++++         .+++|+||+|++||++||+|+||||||||++++.
T Consensus       628 ~~L~v~~l~~---------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          628 RWLEVVGARE---------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             CEEEEEEECS---------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred             eEEEEecCcc---------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence            3577777642         3799999999999999999999999999999853

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.43  E-value=2.7e-08  Score=86.34  Aligned_cols=39  Identities=26%  Similarity=0.240  Sum_probs=35.8

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHh---CCCCCCCceEEEcccc
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLT---GAIKPTSGNAYVMNHS  279 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~---G~~~pt~G~i~i~g~~  279 (288)
                      ++++++|+|+|||||||++++|+   |...|++|++.++|.+
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~   67 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIK   67 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHh
Confidence            47999999999999999999999   9999999999887653

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.42  E-value=3.2e-08  Score=90.96  Aligned_cols=52  Identities=15%  Similarity=0.203  Sum_probs=42.0

Q ss_pred             ccceeeeEE-------EEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC-CceEEEccccc
Q psy7219         229 KPAVNQISF-------GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNHSI  280 (288)
Q Consensus       229 ~~av~~is~-------~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt-~G~i~i~g~~i  280 (288)
                      .+.++++.+       .+.+|++++++||||||||||+++|.|..+|+ +|.+...+.++
T Consensus       103 ~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~  162 (356)
T 3jvv_A          103 VLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI  162 (356)
T ss_dssp             CCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred             CCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH
Confidence            356666665       67899999999999999999999999999998 56766554443

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.40  E-value=1.4e-07  Score=77.60  Aligned_cols=41  Identities=17%  Similarity=0.303  Sum_probs=36.5

Q ss_pred             ce--eeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCce
Q psy7219         231 AV--NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN  272 (288)
Q Consensus       231 av--~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~  272 (288)
                      .+  +++++.+.+| +.+|+|+|||||||+++.|.+...+++|.
T Consensus        14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~   56 (182)
T 3kta_A           14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK   56 (182)
T ss_dssp             GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred             eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence            55  7889999999 99999999999999999999988777664

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.38  E-value=4.1e-08  Score=86.99  Aligned_cols=49  Identities=18%  Similarity=0.129  Sum_probs=44.5

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ..+++++++.+++|  ++|.||||+||||++|+|+|+..+  |.+.++|.++.
T Consensus        33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~   81 (274)
T 2x8a_A           33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELL   81 (274)
T ss_dssp             HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTC
T ss_pred             HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHH
Confidence            35889999999999  999999999999999999999887  79999998874

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.37  E-value=1.7e-07  Score=87.10  Aligned_cols=41  Identities=27%  Similarity=0.467  Sum_probs=37.1

Q ss_pred             EEeCCCEEEEEcCCCCChHHHHHHHhC------------CCCCCCceEEEccc
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTFKMLTG------------AIKPTSGNAYVMNH  278 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G------------~~~pt~G~i~i~g~  278 (288)
                      .+++|+.+||+|+|||||||++++|+|            ...|++|.+.+.|.
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~   68 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDE   68 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCH
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCc
Confidence            457899999999999999999999999            66799999999874

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.36  E-value=4.7e-08  Score=85.43  Aligned_cols=42  Identities=29%  Similarity=0.251  Sum_probs=39.3

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHh---CCCCCCCceEE--------Ecccccc
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLT---GAIKPTSGNAY--------VMNHSIR  281 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~---G~~~pt~G~i~--------i~g~~i~  281 (288)
                      ++|++++|+|+|||||||+.++|+   |...+++|.++        .+|.++.
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~   77 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDIS   77 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcc
Confidence            789999999999999999999999   99999999999        8887774

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.36  E-value=1.1e-07  Score=76.63  Aligned_cols=45  Identities=22%  Similarity=0.374  Sum_probs=39.1

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc--eEEEcccccc
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG--NAYVMNHSIR  281 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G--~i~i~g~~i~  281 (288)
                      +++++     +|+.++|.|+||+||||+++++.|..++ +|  .+++++.++.
T Consensus        30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~   76 (149)
T 2kjq_A           30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMP   76 (149)
T ss_dssp             HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSC
T ss_pred             HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhh
Confidence            56666     8999999999999999999999999887 58  8888887654

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.35  E-value=1.8e-07  Score=95.72  Aligned_cols=60  Identities=17%  Similarity=0.204  Sum_probs=46.8

Q ss_pred             eEEEEeeeEEeccc-cccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHH--------hCCCCCCCc
Q psy7219         212 VLVVKRLFKIYANS-KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML--------TGAIKPTSG  271 (288)
Q Consensus       212 ~l~~~~l~k~y~~~-~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l--------~G~~~pt~G  271 (288)
                      .+.+++.+..+-.. .+++.+.+|++|++++||+++|+|||||||||++|++        .|.+.|.++
T Consensus       631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~  699 (934)
T 3thx_A          631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES  699 (934)
T ss_dssp             EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEE
T ss_pred             ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccc
Confidence            46666665544211 1235689999999999999999999999999999999        888877664

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.34  E-value=2.8e-07  Score=78.95  Aligned_cols=42  Identities=19%  Similarity=0.283  Sum_probs=37.7

Q ss_pred             EEeCCCEEEEEcCCCCChHHHHHHHhC--CCCC-----CCceEEEcccc
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTFKMLTG--AIKP-----TSGNAYVMNHS  279 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G--~~~p-----t~G~i~i~g~~  279 (288)
                      ++++||+++|+|+|||||||+++.+++  ..+|     +.|.+++++.+
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            689999999999999999999999999  5555     67899998876

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.33  E-value=2.1e-07  Score=87.17  Aligned_cols=47  Identities=23%  Similarity=0.328  Sum_probs=40.8

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCC-----------CCCCCceEEEcc
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA-----------IKPTSGNAYVMN  277 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~-----------~~pt~G~i~i~g  277 (288)
                      --++++|.+++|+.+||+|+|||||||++++|+|.           ..|+.|.+.+++
T Consensus       146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~  203 (416)
T 1udx_A          146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE  203 (416)
T ss_dssp             CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS
T ss_pred             eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC
Confidence            35799999999999999999999999999999998           456667776654

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.32  E-value=2e-07  Score=80.08  Aligned_cols=40  Identities=15%  Similarity=0.155  Sum_probs=35.9

Q ss_pred             EEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ..++|++++|.|+|||||||++++|.|.    .|++.+.+.+..
T Consensus        16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~   55 (230)
T 2vp4_A           16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVE   55 (230)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHH
Confidence            4468999999999999999999999998    789999888764

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.31  E-value=1.6e-07  Score=95.78  Aligned_cols=52  Identities=15%  Similarity=0.166  Sum_probs=40.2

Q ss_pred             eEEEEeeeEEecc---ccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219         212 VLVVKRLFKIYAN---SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       212 ~l~~~~l~k~y~~---~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      .+.+++.+.-.-.   ..+++.+.+|++|++++||+++|+|||||||||++|++.
T Consensus       640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~  694 (918)
T 3thx_B          640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVA  694 (918)
T ss_dssp             EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHH
T ss_pred             cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHH
Confidence            4556655443210   112467999999999999999999999999999999986

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.31  E-value=9.4e-08  Score=87.60  Aligned_cols=51  Identities=18%  Similarity=0.337  Sum_probs=44.5

Q ss_pred             cceeee-EEEEeCCCEEEEEcCCCCChHHHHHHHhCCC--CCCC----ce-EEEccccc
Q psy7219         230 PAVNQI-SFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTS----GN-AYVMNHSI  280 (288)
Q Consensus       230 ~av~~i-s~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~--~pt~----G~-i~i~g~~i  280 (288)
                      +.+|++ ..++++|++++|.|+|||||||+++.++|..  +|++    |+ +++++.+.
T Consensus       118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~  176 (349)
T 1pzn_A          118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT  176 (349)
T ss_dssp             HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred             HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence            466666 6899999999999999999999999999998  6776    67 89998764

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.31  E-value=1.2e-07  Score=95.09  Aligned_cols=59  Identities=20%  Similarity=0.138  Sum_probs=44.9

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-CCCceE
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-PTSGNA  273 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-pt~G~i  273 (288)
                      ..+.+++.+.-.-.. +++.+++|+||+   ||+++|+|||||||||++|+++|... ++.|.+
T Consensus       549 ~~i~i~~~rHP~le~-~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~  608 (765)
T 1ewq_A          549 DRLQIRAGRHPVVER-RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSF  608 (765)
T ss_dssp             SSEEEEEECCTTGGG-TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC
T ss_pred             CcEEEEEeECceEcc-CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCce
Confidence            346666664322110 235789999999   99999999999999999999999874 677754

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.29  E-value=3.1e-07  Score=92.63  Aligned_cols=54  Identities=11%  Similarity=0.047  Sum_probs=40.9

Q ss_pred             eEEEEeeeEEeccc-cccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         212 VLVVKRLFKIYANS-KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       212 ~l~~~~l~k~y~~~-~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .+.+++.+.-.-.. .+++.+++|++|+ ++|++++|+|||||||||++|+++|..
T Consensus       577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            46666554322100 0235689999999 999999999999999999999999863

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.29  E-value=6.7e-07  Score=91.18  Aligned_cols=43  Identities=19%  Similarity=0.368  Sum_probs=35.7

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHH---------HHHhCCCCCCCc
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTF---------KMLTGAIKPTSG  271 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~---------~~l~G~~~pt~G  271 (288)
                      ..+++|+||+|++||++||+|+|||||||++         +.+.|...+..+
T Consensus       597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~  648 (916)
T 3pih_A          597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGE  648 (916)
T ss_dssp             STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCC
T ss_pred             cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccc
Confidence            3589999999999999999999999999997         556555555443

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.29  E-value=1e-07  Score=86.41  Aligned_cols=50  Identities=24%  Similarity=0.321  Sum_probs=46.2

Q ss_pred             eeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         233 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       233 ~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ++++|.+++|++++++|+||+||||+...|++.+.+..|++.+.+.|+..
T Consensus        96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r  145 (320)
T 1zu4_A           96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFR  145 (320)
T ss_dssp             CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred             cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            67889999999999999999999999999999999999999998888743

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.28  E-value=1.5e-07  Score=79.11  Aligned_cols=42  Identities=21%  Similarity=0.270  Sum_probs=37.7

Q ss_pred             EeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219         239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  280 (288)
Q Consensus       239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i  280 (288)
                      .++|+++||.|+|||||||+.++|.+..++.+|++.+.+.|.
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~   60 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD   60 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence            568899999999999999999999999998899998876654

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.25  E-value=4.4e-07  Score=76.04  Aligned_cols=40  Identities=25%  Similarity=0.212  Sum_probs=24.6

Q ss_pred             ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       227 ~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +...+++|+||.+++|+++.|+|++||||||+.+.|++.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            3457999999999999999999999999999999998754

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=98.22  E-value=1.1e-06  Score=80.69  Aligned_cols=48  Identities=27%  Similarity=0.337  Sum_probs=39.7

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC-------------CCCCCCceEEEcc
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG-------------AIKPTSGNAYVMN  277 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G-------------~~~pt~G~i~i~g  277 (288)
                      ...++++++.+.+| +.+|+|+||+||||++++|.+             +....++.+.+.+
T Consensus        14 ~~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~~~~g~~R~~~~~~lI~~g~~~~~V~~   74 (359)
T 2o5v_A           14 YRNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYLALTGQTDAPRIEQLIQAGETEAYVRA   74 (359)
T ss_dssp             BTTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHHHSCCCCSSGGGGBCTTCSCEEEEE
T ss_pred             ccceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHHhccCCCCCCCHHHHhccCCCcEEEEE
Confidence            34678999999999 999999999999999999997             5555556565544

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.21  E-value=8e-09  Score=93.99  Aligned_cols=63  Identities=22%  Similarity=0.291  Sum_probs=49.4

Q ss_pred             EEeeeEEeccccccccceeeeEEEEeCC-------CEEEEEcCCCCChHHHHHHHhCCC----CCCCceEEEcccccc
Q psy7219         215 VKRLFKIYANSKDTKPAVNQISFGVGRG-------ECFGLLGLNGAGKTTTFKMLTGAI----KPTSGNAYVMNHSIR  281 (288)
Q Consensus       215 ~~~l~k~y~~~~~~~~av~~is~~v~~G-------e~~gllG~NGaGKTT~~~~l~G~~----~pt~G~i~i~g~~i~  281 (288)
                      .+++.+.|+    +..+++++++.+++|       +.++|.||||+||||++++++|..    .+++|.+..++.++.
T Consensus        21 ~~~l~~~~g----~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~   94 (334)
T 1in4_A           21 PKSLDEFIG----QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA   94 (334)
T ss_dssp             CSSGGGCCS----CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHH
T ss_pred             CccHHHccC----cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHH
Confidence            344555553    245788888888876       899999999999999999999998    778888877666543

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.19  E-value=2.5e-07  Score=83.30  Aligned_cols=47  Identities=17%  Similarity=0.171  Sum_probs=42.0

Q ss_pred             eEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       235 is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      +++..++|++++++|+||+||||+.+.|++.++++.|++.+.+.|..
T Consensus        97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~  143 (306)
T 1vma_A           97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF  143 (306)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred             CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence            45556789999999999999999999999999999999999887764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.18  E-value=6.9e-07  Score=74.13  Aligned_cols=38  Identities=21%  Similarity=0.241  Sum_probs=32.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCC-----------CCceEEEcccccc
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIKP-----------TSGNAYVMNHSIR  281 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~p-----------t~G~i~i~g~~i~  281 (288)
                      .++++|+|||||||+++.++|...+           ++|++.++|.++.
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~   79 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK   79 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEE
Confidence            6789999999999999999998775           5788999987653

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.17  E-value=2.2e-07  Score=90.06  Aligned_cols=45  Identities=24%  Similarity=0.310  Sum_probs=40.0

Q ss_pred             EEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc-eEE-Eccccccc
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAY-VMNHSIRD  282 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G-~i~-i~g~~i~~  282 (288)
                      .+++|++++|+|+|||||||+.++|+|...|++| ++. ++|.++.+
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~  411 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR  411 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence            4789999999999999999999999999999997 774 88877643

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.17  E-value=3.2e-07  Score=82.12  Aligned_cols=48  Identities=23%  Similarity=0.230  Sum_probs=44.3

Q ss_pred             eeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         233 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       233 ~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +++++.  +|++++++|+||+||||+.+.|+|...+..|++.+.+.|.+.
T Consensus        91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~  138 (295)
T 1ls1_A           91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (295)
T ss_dssp             CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred             ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence            678887  999999999999999999999999999999999999888754

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.15  E-value=1.4e-07  Score=77.72  Aligned_cols=36  Identities=28%  Similarity=0.336  Sum_probs=31.9

Q ss_pred             EEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCce
Q psy7219         237 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN  272 (288)
Q Consensus       237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~  272 (288)
                      +.+++|+.++|.||||+||||+++.+++...|++|.
T Consensus        33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~   68 (180)
T 3ec2_A           33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI   68 (180)
T ss_dssp             CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred             ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence            445679999999999999999999999999877773

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.12  E-value=1.1e-06  Score=73.94  Aligned_cols=40  Identities=15%  Similarity=0.226  Sum_probs=33.2

Q ss_pred             EeCCCEEEEEcCCCCChHHHHHHHhCCCC-------------CCCceEEEccccc
Q psy7219         239 VGRGECFGLLGLNGAGKTTTFKMLTGAIK-------------PTSGNAYVMNHSI  280 (288)
Q Consensus       239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-------------pt~G~i~i~g~~i  280 (288)
                      ..+|+.++|+|||||||||+++.|.+..+             |..|+  ++|.+.
T Consensus        16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y   68 (197)
T 3ney_A           16 FQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEY   68 (197)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSC
T ss_pred             CCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccc
Confidence            34899999999999999999999998876             66676  566553

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.10  E-value=3.5e-07  Score=84.60  Aligned_cols=44  Identities=18%  Similarity=0.193  Sum_probs=39.5

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV  275 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i  275 (288)
                      ..+++++++++++|++++|.||||+||||++++|+|.   .+|++..
T Consensus       156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~  199 (377)
T 1svm_A          156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALN  199 (377)
T ss_dssp             HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEEC
T ss_pred             HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEE
Confidence            3589999999999999999999999999999999985   4677665

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.10  E-value=3.6e-07  Score=79.33  Aligned_cols=49  Identities=16%  Similarity=0.243  Sum_probs=43.3

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ..+++++++.+++|  +.|.||||+||||+++++++...  .|.+.++|.++.
T Consensus        38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~   86 (254)
T 1ixz_A           38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFV   86 (254)
T ss_dssp             HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHH
T ss_pred             HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHH
Confidence            35789999999999  89999999999999999999886  789999887653

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.09  E-value=2.1e-06  Score=77.47  Aligned_cols=30  Identities=20%  Similarity=0.360  Sum_probs=27.4

Q ss_pred             eeEEEEeCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219         234 QISFGVGRGECFGLLGLNGAGKTTTFKMLTG  264 (288)
Q Consensus       234 ~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G  264 (288)
                      ++++.+.+| +.+|+|+|||||||+++.|..
T Consensus        17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~   46 (322)
T 1e69_A           17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKW   46 (322)
T ss_dssp             CEEEECCSS-EEEEECCTTTCSTHHHHHHHH
T ss_pred             CeEEecCCC-cEEEECCCCCcHHHHHHHHHH
Confidence            578888899 999999999999999999983

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.08  E-value=2.7e-07  Score=83.52  Aligned_cols=47  Identities=23%  Similarity=0.368  Sum_probs=39.2

Q ss_pred             ccceeeeEEEEeCCC------EEEEEcCCCCChHHHHHHHhCCCC--CCCceEEE
Q psy7219         229 KPAVNQISFGVGRGE------CFGLLGLNGAGKTTTFKMLTGAIK--PTSGNAYV  275 (288)
Q Consensus       229 ~~av~~is~~v~~Ge------~~gllG~NGaGKTT~~~~l~G~~~--pt~G~i~i  275 (288)
                      +.++++++..+.+++      ++||.|+|||||||++++|.++..  |++|++.+
T Consensus        73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~  127 (321)
T 3tqc_A           73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV  127 (321)
T ss_dssp             HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred             hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence            457777777777776      999999999999999999999987  56777544

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.07  E-value=4.4e-07  Score=80.02  Aligned_cols=49  Identities=16%  Similarity=0.243  Sum_probs=43.6

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ..+++++++.+++|  +.|.||||+||||++++|++...  .|.+.+++.++.
T Consensus        62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~  110 (278)
T 1iy2_A           62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFV  110 (278)
T ss_dssp             HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHH
T ss_pred             HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHH
Confidence            35889999999999  89999999999999999999886  799999987653

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=98.07  E-value=2.4e-06  Score=78.63  Aligned_cols=34  Identities=24%  Similarity=0.396  Sum_probs=31.1

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      ...++++++++++| .++|+|||||||||++++|+
T Consensus        11 f~~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           11 FLGLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             ETTEEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred             ccCccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            34778899999999 89999999999999999998

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.06  E-value=5.8e-07  Score=75.75  Aligned_cols=49  Identities=20%  Similarity=0.139  Sum_probs=41.0

Q ss_pred             ccceeeeEE-EEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219         229 KPAVNQISF-GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS  279 (288)
Q Consensus       229 ~~av~~is~-~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~  279 (288)
                      .+.+|++.. ++++|++++|.|+||+||||+.+.+++  ++..+.++++..+
T Consensus         6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~   55 (220)
T 2cvh_A            6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG   55 (220)
T ss_dssp             CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC
T ss_pred             cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC
Confidence            457778776 799999999999999999999999999  5555677777654

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.04  E-value=3.7e-07  Score=83.30  Aligned_cols=52  Identities=19%  Similarity=0.174  Sum_probs=45.2

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  280 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i  280 (288)
                      ..+++++++.+.+|++++++|+|||||||+++.|+|...+..|++.+-+.+.
T Consensus        43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~   94 (341)
T 2p67_A           43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP   94 (341)
T ss_dssp             HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence            4588899999999999999999999999999999999888888777655544

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.02  E-value=1.3e-06  Score=78.22  Aligned_cols=41  Identities=24%  Similarity=0.248  Sum_probs=36.4

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc-eEEEccccc
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAYVMNHSI  280 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G-~i~i~g~~i  280 (288)
                      .+|++++++|+||+||||+++.|++...+++| ++.+-+.|.
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~  144 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT  144 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence            47999999999999999999999999999888 787766654

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.99  E-value=2.9e-06  Score=79.58  Aligned_cols=50  Identities=22%  Similarity=0.394  Sum_probs=37.4

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG  271 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G  271 (288)
                      .+.++|+ +.|..    .   +  .+++.+|++.+|+|||||||||++++|++...++++
T Consensus         6 ~l~~~~~-~~~~~----~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~   55 (430)
T 1w1w_A            6 GLELSNF-KSYRG----V---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN   55 (430)
T ss_dssp             EEEEESC-SSCCS----E---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred             EEEEeCE-EEECC----c---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhccccc
Confidence            3667777 56632    1   1  245678999999999999999999999999888763

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.95  E-value=1.8e-06  Score=79.04  Aligned_cols=41  Identities=22%  Similarity=0.216  Sum_probs=36.3

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ++.+++|+|++||||||+++.|+|...+++|++.+.+.+..
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~  113 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS  113 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence            57799999999999999999999999999999988877654

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.90  E-value=3.3e-06  Score=81.37  Aligned_cols=43  Identities=14%  Similarity=0.078  Sum_probs=37.0

Q ss_pred             EEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCce--EEEcccc
Q psy7219         236 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN--AYVMNHS  279 (288)
Q Consensus       236 s~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~--i~i~g~~  279 (288)
                      +.++++||+++|.|+||+||||+++.++|..+|+ |.  +++.+.+
T Consensus       275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee  319 (525)
T 1tf7_A          275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEE  319 (525)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSS
T ss_pred             CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeC
Confidence            3489999999999999999999999999999885 64  5776654

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.87  E-value=8.8e-06  Score=75.79  Aligned_cols=43  Identities=26%  Similarity=0.317  Sum_probs=36.9

Q ss_pred             EEeCCCEEEEEcCCCCChHHHHH--HHhCCCCCCCc-----eEEEccccc
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTFK--MLTGAIKPTSG-----NAYVMNHSI  280 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~~--~l~G~~~pt~G-----~i~i~g~~i  280 (288)
                      ++++|+++.|.|+||+||||+++  ++.+..+++.|     .+++++.+.
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~  223 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT  223 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc
Confidence            89999999999999999999999  45688877554     889988763

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.82  E-value=3.5e-06  Score=72.07  Aligned_cols=51  Identities=27%  Similarity=0.305  Sum_probs=38.5

Q ss_pred             ccceeee-EEEEeCCCEEEEEcCCCCChHHHH-HHHhCCCCCCCceEEEcccc
Q psy7219         229 KPAVNQI-SFGVGRGECFGLLGLNGAGKTTTF-KMLTGAIKPTSGNAYVMNHS  279 (288)
Q Consensus       229 ~~av~~i-s~~v~~Ge~~gllG~NGaGKTT~~-~~l~G~~~pt~G~i~i~g~~  279 (288)
                      .+.+|++ .-++++|++++|.|+||+||||+. +++.+..+...+.+++++..
T Consensus         9 ~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~   61 (247)
T 2dr3_A            9 IPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE   61 (247)
T ss_dssp             CTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             chhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence            4567777 678999999999999999999995 45555545555666776544

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.79  E-value=2.8e-06  Score=83.26  Aligned_cols=54  Identities=17%  Similarity=0.210  Sum_probs=48.0

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC-ceEEEcccccc
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS-GNAYVMNHSIR  281 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~-G~i~i~g~~i~  281 (288)
                      ...+++++++.+.+|+.+.|.||||+||||+.+.|+|..+++. |.+.+.+.+..
T Consensus        46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~  100 (604)
T 3k1j_A           46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED  100 (604)
T ss_dssp             CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC
T ss_pred             chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc
Confidence            3568999999999999999999999999999999999999988 77888766543

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.70  E-value=1.2e-05  Score=70.91  Aligned_cols=30  Identities=27%  Similarity=0.287  Sum_probs=27.5

Q ss_pred             EEeCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      ++++|++++|+|+||+||||+++.+++...
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            689999999999999999999999997554

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.69  E-value=9.3e-06  Score=76.17  Aligned_cols=48  Identities=23%  Similarity=0.230  Sum_probs=43.4

Q ss_pred             eeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         233 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       233 ~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +++++.  +|++++++|+||+||||+...|++.+.+..|++.+.+.|..+
T Consensus        91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r  138 (425)
T 2ffh_A           91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (425)
T ss_dssp             CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred             ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence            567777  899999999999999999999999999999999998887654

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.65  E-value=5.3e-06  Score=70.01  Aligned_cols=46  Identities=24%  Similarity=0.196  Sum_probs=39.0

Q ss_pred             EEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc--eEEEccccccc
Q psy7219         237 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG--NAYVMNHSIRD  282 (288)
Q Consensus       237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G--~i~i~g~~i~~  282 (288)
                      +.+++|.++.+.|++||||||+.+.|.+.+.|+.|  .+.++|.++..
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~   67 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF   67 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhh
Confidence            34567899999999999999999999999988888  88888766543

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.64  E-value=2.3e-05  Score=65.68  Aligned_cols=30  Identities=27%  Similarity=0.312  Sum_probs=27.2

Q ss_pred             EEeCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      .+++|+++||.|++||||||+.++|.+.++
T Consensus        17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~   46 (207)
T 2qt1_A           17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP   46 (207)
T ss_dssp             CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            456899999999999999999999999864

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=97.63  E-value=1.2e-05  Score=77.15  Aligned_cols=35  Identities=26%  Similarity=0.435  Sum_probs=30.9

Q ss_pred             cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219         230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      ..++++++...+| ..+|+|+|||||||+++.|.+.
T Consensus        49 ~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             TTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred             cceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence            4677899999999 9999999999999999999433

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.60  E-value=8.1e-06  Score=73.04  Aligned_cols=48  Identities=21%  Similarity=0.121  Sum_probs=42.1

Q ss_pred             ee-eEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         233 NQ-ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       233 ~~-is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      ++ +++..+ |++++++|+||+||||+...|++...+..|++.+.+.|..
T Consensus        89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~  137 (297)
T 1j8m_F           89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY  137 (297)
T ss_dssp             CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            44 677765 9999999999999999999999999999999998877754

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.57  E-value=3e-05  Score=66.58  Aligned_cols=47  Identities=13%  Similarity=0.128  Sum_probs=33.1

Q ss_pred             cceeeeEEEEe---CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219         230 PAVNQISFGVG---RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  277 (288)
Q Consensus       230 ~av~~is~~v~---~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g  277 (288)
                      .-+.+.++...   +|..+.+.|++||||||+.+.|...+.+ .+.+...+
T Consensus        11 ~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~   60 (229)
T 4eaq_A           11 VDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR   60 (229)
T ss_dssp             ---------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred             cCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence            34566666665   9999999999999999999999999888 67776543

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.56  E-value=3.8e-05  Score=63.32  Aligned_cols=48  Identities=31%  Similarity=0.436  Sum_probs=26.8

Q ss_pred             cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC----CCCCC----CceEEEccc
Q psy7219         230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG----AIKPT----SGNAYVMNH  278 (288)
Q Consensus       230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G----~~~pt----~G~i~i~g~  278 (288)
                      .+++++++..++. .++++|++|+||||+++.+++    .+.||    .+++.++|.
T Consensus        12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~   67 (190)
T 1m2o_B           12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI   67 (190)
T ss_dssp             ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred             HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence            3788999988877 678999999999999999997    33344    345555553

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.53  E-value=2.5e-05  Score=70.69  Aligned_cols=36  Identities=25%  Similarity=0.237  Sum_probs=26.6

Q ss_pred             EEEEcCCCCChHHHHHHHhC-CCCCCCceEEEccccc
Q psy7219         245 FGLLGLNGAGKTTTFKMLTG-AIKPTSGNAYVMNHSI  280 (288)
Q Consensus       245 ~gllG~NGaGKTT~~~~l~G-~~~pt~G~i~i~g~~i  280 (288)
                      +.|.||||+||||+++.++| +..|+.|++.++|.+.
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~   75 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF   75 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceee
Confidence            78999999999999999999 7899999998887654

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.53  E-value=5.7e-05  Score=60.43  Aligned_cols=29  Identities=21%  Similarity=0.380  Sum_probs=23.0

Q ss_pred             eeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219         234 QISFGVGRGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       234 ~is~~v~~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      +.++...+| ..+|+|||||||||+++.|.
T Consensus        16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence            344454444 88999999999999999886

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.53  E-value=8.1e-06  Score=78.99  Aligned_cols=49  Identities=20%  Similarity=0.219  Sum_probs=43.4

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~  278 (288)
                      ..+++++++.+ +|+.+.|.||||+||||+.+.|++...+..|.+..+|.
T Consensus        96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~  144 (543)
T 3m6a_A           96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV  144 (543)
T ss_dssp             HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred             HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence            45778888888 89999999999999999999999999999999888774

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.48  E-value=6.2e-05  Score=69.17  Aligned_cols=37  Identities=32%  Similarity=0.553  Sum_probs=30.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC-----------CCCceEEEccccc
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIK-----------PTSGNAYVMNHSI  280 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~-----------pt~G~i~i~g~~i  280 (288)
                      .++|+|++||||||+++.|+|...           |+.|++.++|.++
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v  228 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI  228 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence            489999999999999999999876           6678999988654

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.46  E-value=5.6e-05  Score=70.14  Aligned_cols=40  Identities=33%  Similarity=0.557  Sum_probs=33.2

Q ss_pred             EeCCCEEEEEcCCCCChHHHHHHHhCC-----------CCCCCceEEEccc
Q psy7219         239 VGRGECFGLLGLNGAGKTTTFKMLTGA-----------IKPTSGNAYVMNH  278 (288)
Q Consensus       239 v~~Ge~~gllG~NGaGKTT~~~~l~G~-----------~~pt~G~i~i~g~  278 (288)
                      +.+|..+||+|.||+||||+++.|+|.           ..|+.|.+.+.+.
T Consensus        19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~   69 (396)
T 2ohf_A           19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE   69 (396)
T ss_dssp             SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence            457788999999999999999999998           6778888887664

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.45  E-value=8.2e-05  Score=69.90  Aligned_cols=37  Identities=16%  Similarity=0.382  Sum_probs=32.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC------------CCCceEEEccccc
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIK------------PTSGNAYVMNHSI  280 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~------------pt~G~i~i~g~~i  280 (288)
                      .++|+|+||+||||+++.|+|...            +.+|.+.++|.++
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~  230 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY  230 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence            789999999999999999999864            6778999998754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.45  E-value=2.7e-05  Score=64.70  Aligned_cols=49  Identities=29%  Similarity=0.445  Sum_probs=37.8

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCC--------CCCCCceEEEccc
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA--------IKPTSGNAYVMNH  278 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~--------~~pt~G~i~i~g~  278 (288)
                      ..+++++++..+++. ++++|++|+||||+++.+++.        ..++.+++.++|.
T Consensus        13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~   69 (198)
T 1f6b_A           13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM   69 (198)
T ss_dssp             CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTE
T ss_pred             HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCE
Confidence            357888888887774 689999999999999999973        2334566666664

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.40  E-value=3.9e-05  Score=73.42  Aligned_cols=48  Identities=17%  Similarity=0.252  Sum_probs=42.5

Q ss_pred             cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .+++++++.+++|  +.|.||||+||||+.+.++|...  .|.+.+++.++.
T Consensus        54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~  101 (499)
T 2dhr_A           54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFV  101 (499)
T ss_dssp             GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGT
T ss_pred             hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHH
Confidence            4778889999999  88999999999999999999875  789999988764

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.36  E-value=3.9e-05  Score=70.89  Aligned_cols=51  Identities=22%  Similarity=0.339  Sum_probs=43.7

Q ss_pred             EEEEeeeEEecccccccccee--------------eeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         213 LVVKRLFKIYANSKDTKPAVN--------------QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~--------------~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +..+|++..|+.   ++..++              |+.+.+.+||..+|+|++|+||||++++|++..
T Consensus       134 i~Fe~ltp~yP~---er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          134 ILFENLTPLHAN---SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             CCTTTSCEESCC---SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             ceeccccccCCC---CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            556777788864   356777              899999999999999999999999999998764

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.34  E-value=7.5e-05  Score=68.24  Aligned_cols=43  Identities=16%  Similarity=0.277  Sum_probs=33.0

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC--CCCCCCceEE
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAY  274 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G--~~~pt~G~i~  274 (288)
                      ..+++++++.++   .++++|.+||||||+++.|+|  ..++.+|.+.
T Consensus        24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT   68 (360)
T 3t34_A           24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT   68 (360)
T ss_dssp             SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred             ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence            358999999998   899999999999999999999  5566666553

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.25  E-value=3.3e-05  Score=70.87  Aligned_cols=51  Identities=18%  Similarity=0.096  Sum_probs=35.6

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCce
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN  272 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~  272 (288)
                      .+.++++.+.|.    ++.+.++.+|+|      +++|++|+||||+++.|.|...+..|.
T Consensus        17 ~v~~~~l~~~~~----~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~   67 (361)
T 2qag_A           17 YVGFANLPNQVH----RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV   67 (361)
T ss_dssp             ----CCHHHHHH----THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred             eEEeccchHHhC----CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence            466778877774    356888999887      899999999999999998876655443

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.17  E-value=0.0001  Score=67.44  Aligned_cols=51  Identities=22%  Similarity=0.279  Sum_probs=41.5

Q ss_pred             cceeeeEE--EEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceE-EEccccc
Q psy7219         230 PAVNQISF--GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA-YVMNHSI  280 (288)
Q Consensus       230 ~av~~is~--~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i-~i~g~~i  280 (288)
                      +.+|.+-=  ++++|+++.|.|++|+||||+...+++...+..|.+ ++++...
T Consensus        47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s  100 (356)
T 3hr8_A           47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA  100 (356)
T ss_dssp             HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence            45555533  689999999999999999999999999888877865 7776553

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.16  E-value=1.3e-05  Score=72.68  Aligned_cols=47  Identities=23%  Similarity=0.274  Sum_probs=39.7

Q ss_pred             ccceeeeEEEEeCCCE--EEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219         229 KPAVNQISFGVGRGEC--FGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV  275 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~--~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i  275 (288)
                      ..+++.++..+++|+.  +.+.||+|+||||+.+.+++...+..++..+
T Consensus        31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~   79 (340)
T 1sxj_C           31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMV   79 (340)
T ss_dssp             HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHE
T ss_pred             HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceE
Confidence            4588888888999998  9999999999999999999988776665433

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=97.12  E-value=0.00027  Score=64.03  Aligned_cols=28  Identities=18%  Similarity=0.321  Sum_probs=21.9

Q ss_pred             eeEEEEeCCCEEEEEcCCCCChHHHHHHH
Q psy7219         234 QISFGVGRGECFGLLGLNGAGKTTTFKML  262 (288)
Q Consensus       234 ~is~~v~~Ge~~gllG~NGaGKTT~~~~l  262 (288)
                      +..+...+ ..++|+|||||||||++..|
T Consensus        16 ~~~i~f~~-~~~~i~G~NGsGKS~lleAi   43 (339)
T 3qkt_A           16 DTVVEFKE-GINLIIGQNGSGKSSLLDAI   43 (339)
T ss_dssp             EEEEECCS-EEEEEECCTTSSHHHHHHHH
T ss_pred             CeEEcCCC-CeEEEECCCCCCHHHHHHHH
Confidence            34444444 48899999999999999976

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.09  E-value=0.00035  Score=58.67  Aligned_cols=29  Identities=17%  Similarity=0.295  Sum_probs=22.4

Q ss_pred             eeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219         234 QISFGVGRGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       234 ~is~~v~~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      +.++...+ ....|.|+|||||||++..|.
T Consensus        16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence            34444444 488999999999999999764

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.00  E-value=0.00021  Score=59.36  Aligned_cols=35  Identities=17%  Similarity=0.433  Sum_probs=28.2

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219         242 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  280 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i  280 (288)
                      ..+++|.|++||||||+.+.|.+.+    |...+++.++
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~   52 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL   52 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence            4579999999999999999998765    5566665554

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.96  E-value=0.00032  Score=60.76  Aligned_cols=42  Identities=24%  Similarity=0.256  Sum_probs=33.8

Q ss_pred             EeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ..++..+.+.|++||||||+.+.|.....  .|.+.+++-.++.
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r~   70 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFRS   70 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGGT
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHHH
Confidence            34677899999999999999999998764  3567888766643

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.92  E-value=0.00035  Score=62.12  Aligned_cols=29  Identities=17%  Similarity=0.096  Sum_probs=26.5

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCCCCC
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAIKPT  269 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt  269 (288)
                      +++++||.|++||||||+.+.|.+.++++
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~   58 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK   58 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            57799999999999999999999998764

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.89  E-value=0.00065  Score=57.98  Aligned_cols=28  Identities=36%  Similarity=0.386  Sum_probs=24.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCCCCc
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIKPTSG  271 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~pt~G  271 (288)
                      .++|+|++|+||||+++.|+|...+.+|
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~~~~~~   58 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRKVFHSG   58 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence            5789999999999999999998877665

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.82  E-value=0.00052  Score=58.62  Aligned_cols=34  Identities=18%  Similarity=0.179  Sum_probs=26.7

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhC---CCCCCCceE
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTG---AIKPTSGNA  273 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G---~~~pt~G~i  273 (288)
                      .+|++++|.|++||||||+.++|++   ...++.|.+
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~   50 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM   50 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCe
Confidence            4788999999999999999999985   333444443

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.81  E-value=0.00025  Score=66.59  Aligned_cols=40  Identities=25%  Similarity=0.193  Sum_probs=35.3

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  280 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i  280 (288)
                      ++.+++++|+||+||||+...|++...+..+++.+-+.|+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~  135 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV  135 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence            5789999999999999999999999999888988866554

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.81  E-value=0.00013  Score=66.57  Aligned_cols=37  Identities=22%  Similarity=0.232  Sum_probs=32.4

Q ss_pred             cceeeeEEEEeCCCE--EEEEcCCCCChHHHHHHHhCCC
Q psy7219         230 PAVNQISFGVGRGEC--FGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       230 ~av~~is~~v~~Ge~--~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .+++++++.+++|+.  +.|+|++|+||||+.++|++..
T Consensus        10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l   48 (359)
T 2ga8_A           10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII   48 (359)
T ss_dssp             HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence            367778888889988  9999999999999999998754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.68  E-value=0.00099  Score=54.11  Aligned_cols=28  Identities=50%  Similarity=0.642  Sum_probs=24.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC----CCCCc
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI----KPTSG  271 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~----~pt~G  271 (288)
                      .++++|++|+||||+++.+++..    .||.|
T Consensus        18 ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g   49 (181)
T 1fzq_A           18 RILLLGLDNAGKTTLLKQLASEDISHITPTQG   49 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCSCCEEEEEETT
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCcccCcCC
Confidence            57899999999999999999874    56667

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.64  E-value=0.00017  Score=68.12  Aligned_cols=52  Identities=12%  Similarity=0.169  Sum_probs=42.8

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc-eEEEcccc
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAYVMNHS  279 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G-~i~i~g~~  279 (288)
                      +.+.++++..++++|+.+.|.|++|+||||+...+++...+..| .+.+-+.+
T Consensus       189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E  241 (454)
T 2r6a_A          189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE  241 (454)
T ss_dssp             SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred             CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence            34689999989999999999999999999999999988776555 56554443

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.62  E-value=0.00077  Score=58.12  Aligned_cols=46  Identities=20%  Similarity=0.260  Sum_probs=30.4

Q ss_pred             eeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219         232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       232 v~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~  281 (288)
                      .++++...++|  +.|.|++|+||||+.+.+++.....  -+.+++.++.
T Consensus        37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~~   82 (257)
T 1lv7_A           37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFV   82 (257)
T ss_dssp             C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSST
T ss_pred             HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHHH
Confidence            33344444444  8899999999999999999876432  4667766653

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.62  E-value=0.00054  Score=62.47  Aligned_cols=48  Identities=21%  Similarity=0.295  Sum_probs=35.2

Q ss_pred             cceeeeEE--EEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCce-EEEcc
Q psy7219         230 PAVNQISF--GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-AYVMN  277 (288)
Q Consensus       230 ~av~~is~--~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~-i~i~g  277 (288)
                      +.+|.+-=  ++++|+++.|.|+||+||||+...++.......|. ++++.
T Consensus        47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~   97 (349)
T 2zr9_A           47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA   97 (349)
T ss_dssp             HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            34555433  78999999999999999999988887655444444 45554

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.59  E-value=0.002  Score=52.47  Aligned_cols=37  Identities=27%  Similarity=0.400  Sum_probs=27.3

Q ss_pred             EEEEEcCCCCChHHHHHHH-hCC----CCCCCc----eEEEccccc
Q psy7219         244 CFGLLGLNGAGKTTTFKML-TGA----IKPTSG----NAYVMNHSI  280 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l-~G~----~~pt~G----~i~i~g~~i  280 (288)
                      .++++|..|+||||+++.+ .+.    ..||.|    .+.++|..+
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~   67 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY   67 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEE
Confidence            5779999999999999655 454    667766    566666543

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=96.57  E-value=0.0011  Score=63.47  Aligned_cols=48  Identities=8%  Similarity=0.115  Sum_probs=39.9

Q ss_pred             eeEEEEeCCCEEEEEcCCCCChHHHHHHHhC--CCCCCCceEEEcccccc
Q psy7219         234 QISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYVMNHSIR  281 (288)
Q Consensus       234 ~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G--~~~pt~G~i~i~g~~i~  281 (288)
                      .+++++.+++...+.|.+|+||||+++.|..  ..+++.|++.+.+.|.+
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK  208 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK  208 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence            3778889999999999999999999998876  66777788877665543

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.41  E-value=0.00096  Score=61.42  Aligned_cols=36  Identities=25%  Similarity=0.259  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEc
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM  276 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~  276 (288)
                      .+..+.++|++||||||+++.+.+...+..+.+.+-
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~   69 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII   69 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence            577889999999999999999999888888888774

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.38  E-value=0.0023  Score=58.56  Aligned_cols=31  Identities=19%  Similarity=0.381  Sum_probs=24.8

Q ss_pred             eeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219         232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       232 v~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      .++..++..+ ..+.|.|+|||||||++..|.
T Consensus        16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred             ccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence            3556666655 488899999999999998875

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.34  E-value=0.00089  Score=59.46  Aligned_cols=42  Identities=19%  Similarity=0.278  Sum_probs=34.1

Q ss_pred             EEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219         237 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  280 (288)
Q Consensus       237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i  280 (288)
                      ++++++..+.|.||+|+||||+.+.+++...  .+-+.+++.++
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~~l   85 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPEL   85 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHHHH
T ss_pred             cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhHHH
Confidence            3456788999999999999999999998764  56677776554

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=95.99  E-value=0.0035  Score=55.36  Aligned_cols=35  Identities=23%  Similarity=0.217  Sum_probs=28.1

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  277 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g  277 (288)
                      ++..+.|.|++||||||+.+.|....+  .|...+++
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~   66 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN   66 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence            456788999999999999999986553  36677775

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=95.98  E-value=0.0043  Score=62.77  Aligned_cols=40  Identities=23%  Similarity=0.325  Sum_probs=34.3

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHH
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTF  259 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~  259 (288)
                      +.+.+++.+         ..=+|||+++|++|..+++.|++|||||||.
T Consensus        14 ~~I~i~gar---------~hNLkni~v~iP~~~l~viTGvSGSGKSSLa   53 (842)
T 2vf7_A           14 GFVQVRGAR---------QHNLKDISVKVPRDALVVFTGVSGSGKSSLA   53 (842)
T ss_dssp             TEEEEEEEC---------STTCCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred             CeEEEeecc---------ccCCCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence            457777642         3479999999999999999999999999997

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=95.90  E-value=0.0029  Score=53.81  Aligned_cols=25  Identities=24%  Similarity=0.395  Sum_probs=21.7

Q ss_pred             EeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219         239 VGRGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       239 v~~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      +.+|+.+.+.|++|+||||++....
T Consensus        73 i~~g~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           73 ISQNSVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred             HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence            4579999999999999999887664

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.68  E-value=0.0056  Score=55.45  Aligned_cols=42  Identities=14%  Similarity=0.109  Sum_probs=33.5

Q ss_pred             EEeCCCEEEEEcCCCCChHHHHHHHhCC--CCC-----CCceEEEcccc
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTFKMLTGA--IKP-----TSGNAYVMNHS  279 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~--~~p-----t~G~i~i~g~~  279 (288)
                      ++++|+++.|.|++|+||||+...++..  .++     ..+.++++...
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~  166 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN  166 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            6899999999999999999999988875  222     34566777654

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=95.66  E-value=0.0066  Score=62.03  Aligned_cols=30  Identities=30%  Similarity=0.513  Sum_probs=28.5

Q ss_pred             cceeeeEEEEeCCCEEEEEcCCCCChHHHH
Q psy7219         230 PAVNQISFGVGRGECFGLLGLNGAGKTTTF  259 (288)
Q Consensus       230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~  259 (288)
                      .=+|||+++|++++.+.+.|++|||||||.
T Consensus        32 hNLkni~v~iP~~~lvv~tG~SGSGKSSLa   61 (972)
T 2r6f_A           32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLA   61 (972)
T ss_dssp             SSCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred             ccCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence            479999999999999999999999999986

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.60  E-value=0.014  Score=46.95  Aligned_cols=23  Identities=43%  Similarity=0.596  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|+.|+||||+++.+++..
T Consensus        20 ~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           20 RLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            67899999999999999999744

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=95.58  E-value=0.0069  Score=55.05  Aligned_cols=25  Identities=32%  Similarity=0.267  Sum_probs=22.5

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         242 GECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .-.++++|+||+||||+++.|+|..
T Consensus       167 ~~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          167 IPTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3478999999999999999999976

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.57  E-value=0.0063  Score=55.03  Aligned_cols=36  Identities=31%  Similarity=0.338  Sum_probs=29.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCCCC--ceEEEcccc
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIKPTS--GNAYVMNHS  279 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~pt~--G~i~i~g~~  279 (288)
                      ++.|.|++|+||||+++.+.+...+..  ..++++..+
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~   83 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI   83 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc
Confidence            788999999999999999999887753  456666443

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.54  E-value=0.0039  Score=54.90  Aligned_cols=32  Identities=31%  Similarity=0.330  Sum_probs=27.6

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhCCCCCCCceE
Q psy7219         242 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA  273 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i  273 (288)
                      ...+.|.||+|+||||+.+.+.+...++.|..
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~   78 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM   78 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence            35788999999999999999999887777754

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.53  E-value=0.007  Score=49.07  Aligned_cols=24  Identities=25%  Similarity=0.331  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      .++++|+.|+||||+++.+++...
T Consensus        50 ~i~vvG~~g~GKSsll~~l~~~~~   73 (193)
T 2ged_A           50 SIIIAGPQNSGKTSLLTLLTTDSV   73 (193)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            678999999999999999998653

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.44  E-value=0.0061  Score=48.83  Aligned_cols=28  Identities=50%  Similarity=0.630  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC----CCCCCc
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA----IKPTSG  271 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~----~~pt~G  271 (288)
                      .++++|++|+||||+++.+++.    ..||-|
T Consensus        20 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~   51 (183)
T 1moz_A           20 RILILGLDGAGKTTILYRLQIGEVVTTKPTIG   51 (183)
T ss_dssp             EEEEEEETTSSHHHHHHHTCCSEEEEECSSTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCcCccCCcCc
Confidence            6789999999999999999853    345555

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=95.41  E-value=0.006  Score=62.30  Aligned_cols=31  Identities=16%  Similarity=0.354  Sum_probs=29.0

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHH
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTF  259 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~  259 (288)
                      ..=+|||+++|++++.+.+.|++|||||||.
T Consensus        11 ~hNLkni~~~ip~~~l~v~tG~SGSGKSsLa   41 (916)
T 3pih_A           11 VHNLKNITVRIPKNRLVVITGVSGSGKSSLA   41 (916)
T ss_dssp             STTCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred             ccccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence            3479999999999999999999999999986

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.39  E-value=0.013  Score=48.43  Aligned_cols=22  Identities=32%  Similarity=0.415  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      .++++|..|+||||+++.+++.
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4689999999999999988743

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=95.38  E-value=0.01  Score=48.10  Aligned_cols=22  Identities=32%  Similarity=0.415  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      .++++|+.|+||||+++.+++.
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4689999999999999999874

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.36  E-value=0.01  Score=53.15  Aligned_cols=42  Identities=21%  Similarity=0.368  Sum_probs=33.5

Q ss_pred             EEeCCCEEEEEcCCCCChHHHHHHHhCCC-CC------CCceEEEcccc
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTFKMLTGAI-KP------TSGNAYVMNHS  279 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~-~p------t~G~i~i~g~~  279 (288)
                      ++++|+.+.|.|++|+||||+...++... .|      ..+.++++...
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~  151 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG  151 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            78999999999999999999998887653 33      34567777654

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=95.29  E-value=0.0039  Score=58.92  Aligned_cols=45  Identities=29%  Similarity=0.362  Sum_probs=35.3

Q ss_pred             cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219         230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV  275 (288)
Q Consensus       230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i  275 (288)
                      .+++.+ ..+-+|+..+|.|++|+||||++++|.+......|.+.+
T Consensus       140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V  184 (473)
T 1sky_E          140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV  184 (473)
T ss_dssp             HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred             hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence            366666 677799999999999999999999998765544454443

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.27  E-value=0.0084  Score=48.43  Aligned_cols=26  Identities=23%  Similarity=0.227  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIKPT  269 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~pt  269 (288)
                      .++++|+.|+||||+++.+.|.....
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~~~   41 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVPEG   41 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSCGG
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcccc
Confidence            46799999999999999999876543

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=95.27  E-value=0.0094  Score=48.08  Aligned_cols=23  Identities=17%  Similarity=0.296  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|+.|+||||+++.++|..
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            67899999999999999999875

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.26  E-value=0.0094  Score=48.30  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|+.|+||||+++.++|..
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 1svi_A           25 EIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            67899999999999999999864

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.26  E-value=0.015  Score=47.13  Aligned_cols=28  Identities=36%  Similarity=0.480  Sum_probs=23.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC------CCCCCc
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA------IKPTSG  271 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~------~~pt~G  271 (288)
                      .++++|..|+||||+++.+++.      +.||.|
T Consensus        19 ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~   52 (199)
T 4bas_A           19 QVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG   52 (199)
T ss_dssp             EEEEECCTTSCHHHHHHHHSCCC----CCCCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCcccccccccc
Confidence            5679999999999999999983      456666

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=95.26  E-value=0.011  Score=51.43  Aligned_cols=29  Identities=24%  Similarity=0.406  Sum_probs=23.3

Q ss_pred             CEEEEEcCCCCChHHHHHHHhCCCCCCCc
Q psy7219         243 ECFGLLGLNGAGKTTTFKMLTGAIKPTSG  271 (288)
Q Consensus       243 e~~gllG~NGaGKTT~~~~l~G~~~pt~G  271 (288)
                      ..++++|.+|+||||+++.|+|...+..|
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~  128 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVG  128 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccC
Confidence            58899999999999999999998765444

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.26  E-value=0.018  Score=46.01  Aligned_cols=22  Identities=18%  Similarity=0.197  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      .++++|+.|+||||+++.+++.
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4679999999999999998853

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=95.22  E-value=0.014  Score=50.13  Aligned_cols=23  Identities=22%  Similarity=0.251  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++|+|+.|+||||+++.|+|..
T Consensus        24 ~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           24 RIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999865

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.17  E-value=0.015  Score=47.43  Aligned_cols=30  Identities=20%  Similarity=0.289  Sum_probs=23.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC-----CCCCCceE
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA-----IKPTSGNA  273 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~-----~~pt~G~i  273 (288)
                      .++++|+.|+||||+++.+.+.     +.||.|..
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~   50 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS   50 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceE
Confidence            4679999999999999999754     34555544

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.09  E-value=0.0038  Score=59.24  Aligned_cols=45  Identities=22%  Similarity=0.285  Sum_probs=32.1

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS  279 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~  279 (288)
                      .++++++.+++|  +.|.||+|+||||+.+.+++....  --+.+++.+
T Consensus        40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~--~f~~is~~~   84 (476)
T 2ce7_A           40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV--PFFHISGSD   84 (476)
T ss_dssp             HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGG
T ss_pred             HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC--CeeeCCHHH
Confidence            455566666676  779999999999999999986532  234444444

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.03  E-value=0.0055  Score=55.14  Aligned_cols=39  Identities=21%  Similarity=0.383  Sum_probs=30.3

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhCCCCCC----CceEEEccc
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTGAIKPT----SGNAYVMNH  278 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt----~G~i~i~g~  278 (288)
                      .+++.+.|.|++|+||||+++.+.+..++.    ...++++..
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~   85 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR   85 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence            356788999999999999999999877553    345666643

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=94.90  E-value=0.017  Score=47.54  Aligned_cols=25  Identities=36%  Similarity=0.262  Sum_probs=21.3

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      ++-+++|.|+.||||||+.+.|...
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3457899999999999999999753

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=94.83  E-value=0.017  Score=45.75  Aligned_cols=22  Identities=23%  Similarity=0.243  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      .++++|+.|+||||+++.+++.
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999853

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=94.81  E-value=0.014  Score=47.81  Aligned_cols=22  Identities=32%  Similarity=0.392  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      .++++|..|+||||+++.++|.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5789999999999999999864

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=94.81  E-value=0.017  Score=47.88  Aligned_cols=29  Identities=21%  Similarity=0.237  Sum_probs=23.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC-----CCCCce
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI-----KPTSGN  272 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~-----~pt~G~  272 (288)
                      .++++|..|+||||+++.+++..     .||.|.
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~   63 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE   63 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCcCCccce
Confidence            57799999999999999998763     456554

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=94.80  E-value=0.017  Score=45.67  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|..|+||||+++.+++..
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            46799999999999999998654

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=94.78  E-value=0.017  Score=47.16  Aligned_cols=25  Identities=28%  Similarity=0.462  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIKP  268 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~p  268 (288)
                      .+.++|..|+||||+++.++|...+
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~~~~~   46 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFHKMSP   46 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCCC
Confidence            5779999999999999999996543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=94.77  E-value=0.018  Score=45.90  Aligned_cols=22  Identities=18%  Similarity=0.175  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      .++++|+.|+||||+++.+.+.
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4789999999999999999854

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=94.76  E-value=0.018  Score=46.59  Aligned_cols=23  Identities=22%  Similarity=0.310  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|+.|+||||+++.+++..
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47799999999999999998754

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=94.76  E-value=0.016  Score=47.63  Aligned_cols=22  Identities=36%  Similarity=0.350  Sum_probs=19.7

Q ss_pred             CCEEEEEcCCCCChHHHHHHHh
Q psy7219         242 GECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      .-.++|.|+.||||||+.+.|.
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~   36 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLV   36 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4478999999999999999887

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=94.73  E-value=0.023  Score=50.87  Aligned_cols=35  Identities=23%  Similarity=0.239  Sum_probs=30.7

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG  264 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G  264 (288)
                      ...+++..+.+ .|.-+.+.|++|+||||+...|.+
T Consensus       132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            35788888888 789999999999999999988876

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=94.72  E-value=0.023  Score=49.10  Aligned_cols=24  Identities=33%  Similarity=0.470  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      .++++|+.|+||||+++.|+|...
T Consensus        38 ~I~lvG~~g~GKSSLin~l~~~~~   61 (262)
T 3def_A           38 TVLVLGKGGVGKSSTVNSLIGEQV   61 (262)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            568999999999999999998663

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=94.70  E-value=0.016  Score=46.84  Aligned_cols=23  Identities=35%  Similarity=0.387  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|..|+||||+++.+++..
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           23 HVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEECTTSSHHHHHHHTSCGG
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998865

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=94.70  E-value=0.022  Score=47.24  Aligned_cols=22  Identities=27%  Similarity=0.422  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      .++++|..|+||||+++.+++.
T Consensus        36 ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5789999999999999999874

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=94.65  E-value=0.026  Score=45.75  Aligned_cols=30  Identities=23%  Similarity=0.373  Sum_probs=23.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC-----CCCCCceE
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA-----IKPTSGNA  273 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~-----~~pt~G~i  273 (288)
                      .++++|..|+||||+++.+++.     +.||.|..
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~   57 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDT   57 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEE
T ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce
Confidence            5779999999999999888643     45666643

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=94.65  E-value=0.014  Score=48.08  Aligned_cols=31  Identities=19%  Similarity=0.243  Sum_probs=24.9

Q ss_pred             CEEEEEcCCCCChHHHHHHHhCCCCCCCceE
Q psy7219         243 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA  273 (288)
Q Consensus       243 e~~gllG~NGaGKTT~~~~l~G~~~pt~G~i  273 (288)
                      ..+.|.|++|+||||+.+.+..........+
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~   85 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSS   85 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence            5778999999999999999988765544443

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=94.61  E-value=0.021  Score=47.60  Aligned_cols=28  Identities=14%  Similarity=0.111  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAIKP  268 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~p  268 (288)
                      ++..+.|.|++|+||||+.+.+......
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~   78 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANE   78 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5678899999999999999999876543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=94.61  E-value=0.02  Score=46.16  Aligned_cols=23  Identities=22%  Similarity=0.251  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|..|+||||+++.+++..
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            57899999999999999998653

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=94.54  E-value=0.019  Score=47.25  Aligned_cols=30  Identities=27%  Similarity=0.240  Sum_probs=22.6

Q ss_pred             EEEEEcCCCCChHHHHHHHh-----CCCCCCCceE
Q psy7219         244 CFGLLGLNGAGKTTTFKMLT-----GAIKPTSGNA  273 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~-----G~~~pt~G~i  273 (288)
                      .++++|..|+||||+++.++     +...|+.|..
T Consensus        32 ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~   66 (204)
T 4gzl_A           32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN   66 (204)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEE
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecce
Confidence            57899999999999997766     3555666543

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=94.50  E-value=0.022  Score=46.63  Aligned_cols=23  Identities=22%  Similarity=0.213  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|..|+||||+++.+++..
T Consensus        26 ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           26 KVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            57799999999999999998754

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=94.49  E-value=0.011  Score=49.15  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|..|+||||+++.|+|..
T Consensus        31 ~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           31 EIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             EEEEEESCHHHHHHHHHHHTTCS
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCC
Confidence            67899999999999999999975

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=94.49  E-value=0.023  Score=46.09  Aligned_cols=28  Identities=36%  Similarity=0.484  Sum_probs=22.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC-----CCCCCc
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA-----IKPTSG  271 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~-----~~pt~G  271 (288)
                      .++++|+.|+||||+++.+++.     ..|+.|
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~   57 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIG   57 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSS
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence            4789999999999999999754     345556

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.47  E-value=0.022  Score=45.89  Aligned_cols=22  Identities=32%  Similarity=0.392  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      .++++|..|+||||+++.+++.
T Consensus        18 ~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           18 KVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999954

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=94.45  E-value=0.022  Score=46.65  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|+.|+||||+++.+++..
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~~   49 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIENK   49 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC--
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            56799999999999999998653

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=94.44  E-value=0.023  Score=46.04  Aligned_cols=23  Identities=17%  Similarity=0.176  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|..|+||||+++.+++..
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            57799999999999999998753

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=94.44  E-value=0.024  Score=45.76  Aligned_cols=23  Identities=22%  Similarity=0.202  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|+.|+||||+++.+++..
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            46899999999999999998654

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=94.44  E-value=0.023  Score=46.25  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|..|+||||+++.+++..
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~~   50 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDDT   50 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46799999999999999999754

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=94.35  E-value=0.019  Score=47.77  Aligned_cols=22  Identities=23%  Similarity=0.362  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      .++++|+.|+||||+++.|++.
T Consensus        32 ~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           32 AVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5789999999999999999875

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=94.34  E-value=0.022  Score=50.16  Aligned_cols=24  Identities=17%  Similarity=0.295  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      .++++|+.||||||+++.|+|..-
T Consensus        26 ~I~vvG~~~~GKSTlln~l~g~~~   49 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIVGRDF   49 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             eEEEEcCCCCCHHHHHHHHHCCCc
Confidence            588999999999999999999864

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=94.34  E-value=0.024  Score=48.56  Aligned_cols=23  Identities=30%  Similarity=0.335  Sum_probs=20.2

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhC
Q psy7219         242 GECFGLLGLNGAGKTTTFKMLTG  264 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l~G  264 (288)
                      +-.++|.|+.||||||..+.|.-
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34788999999999999999974

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=94.32  E-value=0.025  Score=47.47  Aligned_cols=23  Identities=22%  Similarity=0.296  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|..|+||||+++.++|..
T Consensus        31 kI~vvG~~~vGKSsLin~l~~~~   53 (228)
T 2qu8_A           31 TIILSGAPNVGKSSFMNIVSRAN   53 (228)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999864

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=94.29  E-value=0.023  Score=48.70  Aligned_cols=22  Identities=18%  Similarity=0.318  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      ++||.|+.||||||+.+.|...
T Consensus        24 iI~I~G~~GSGKST~a~~L~~~   45 (252)
T 1uj2_A           24 LIGVSGGTASGKSSVCAKIVQL   45 (252)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999763

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=94.25  E-value=0.022  Score=45.68  Aligned_cols=23  Identities=30%  Similarity=0.336  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|..|+||||+++.+++..
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~~   45 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMNE   45 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            56799999999999999999753

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=94.24  E-value=0.028  Score=45.43  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      .++++|..|+||||+++.+++.
T Consensus        24 ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5679999999999999999853

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=94.23  E-value=0.027  Score=45.62  Aligned_cols=23  Identities=22%  Similarity=0.340  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|+.|+||||+++.+++..
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            57799999999999999998644

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=94.23  E-value=0.028  Score=45.36  Aligned_cols=22  Identities=18%  Similarity=0.143  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      .++++|..|+||||+++.+++.
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4679999999999999999753

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=94.17  E-value=0.029  Score=45.15  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      .++++|+.|+||||+++.+++.
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5779999999999999999864

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.15  E-value=0.022  Score=46.17  Aligned_cols=23  Identities=17%  Similarity=0.202  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|+.|+||||+++.+++..
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            46799999999999999999755

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.13  E-value=0.03  Score=45.51  Aligned_cols=29  Identities=21%  Similarity=0.343  Sum_probs=23.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC-----CCCCCce
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA-----IKPTSGN  272 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~-----~~pt~G~  272 (288)
                      .++++|..|+||||+++.+++.     +.||.|.
T Consensus        30 ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~   63 (196)
T 2atv_A           30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLES   63 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCc
Confidence            5789999999999999999864     3455554

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=94.10  E-value=0.026  Score=49.43  Aligned_cols=21  Identities=33%  Similarity=0.651  Sum_probs=19.6

Q ss_pred             CEEEEEcCCCCChHHHHHHHh
Q psy7219         243 ECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       243 e~~gllG~NGaGKTT~~~~l~  263 (288)
                      -.+||.|+.||||||+.+.|.
T Consensus        76 ~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           76 YVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999998

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.10  E-value=0.027  Score=46.33  Aligned_cols=23  Identities=17%  Similarity=0.218  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|..|+||||+++.+++..
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            57899999999999999998754

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=94.08  E-value=0.025  Score=49.45  Aligned_cols=27  Identities=22%  Similarity=0.271  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      ++..+.|.||+|+||||+.+.+++...
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~   79 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECS   79 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            456788999999999999999998653

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=94.02  E-value=0.031  Score=45.46  Aligned_cols=29  Identities=28%  Similarity=0.171  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC-----CCCCce
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI-----KPTSGN  272 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~-----~pt~G~  272 (288)
                      .++++|..|+||||+++.+++..     .||.|.
T Consensus        22 ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~   55 (201)
T 2q3h_A           22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFD   55 (201)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC--------CCSSE
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccc
Confidence            57899999999999999998653     456553

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=94.00  E-value=0.038  Score=45.64  Aligned_cols=24  Identities=33%  Similarity=0.217  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      .++++|+.|+||||+++.+++...
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~~~   50 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDNKF   50 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCC
Confidence            467999999999999999997644

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=94.00  E-value=0.04  Score=47.73  Aligned_cols=23  Identities=26%  Similarity=0.486  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|..|+||||+++.|+|..
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            56799999999999999999866

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=93.98  E-value=0.031  Score=45.64  Aligned_cols=23  Identities=22%  Similarity=0.140  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|+.|+||||+++.+++..
T Consensus        30 ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           30 KIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            57899999999999999998654

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=93.97  E-value=0.028  Score=47.93  Aligned_cols=27  Identities=33%  Similarity=0.651  Sum_probs=20.7

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .+|-.+.+.|+.||||||..+.|...+
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l   49 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRL   49 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            478899999999999999999987544

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=93.97  E-value=0.032  Score=45.64  Aligned_cols=23  Identities=17%  Similarity=0.244  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|..|+||||+++.+++..
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~~   49 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKDQ   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            47899999999999999998643

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=93.94  E-value=0.032  Score=45.44  Aligned_cols=23  Identities=35%  Similarity=0.362  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|+.|+||||+++.+++..
T Consensus        31 ki~v~G~~~vGKSsLi~~l~~~~   53 (192)
T 2b6h_A           31 RILMVGLDAAGKTTILYKLKLGE   53 (192)
T ss_dssp             EEEEEESTTSSHHHHHHHHCSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            57899999999999999997643

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=93.87  E-value=0.022  Score=53.43  Aligned_cols=35  Identities=26%  Similarity=0.338  Sum_probs=26.8

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV  275 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i  275 (288)
                      ++.++.++|++|+||||+..-|+..+....-++.+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll  133 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV  133 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            45689999999999999999998665544334443

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=93.87  E-value=0.041  Score=48.36  Aligned_cols=26  Identities=19%  Similarity=0.183  Sum_probs=22.9

Q ss_pred             CEEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219         243 ECFGLLGLNGAGKTTTFKMLTGAIKP  268 (288)
Q Consensus       243 e~~gllG~NGaGKTT~~~~l~G~~~p  268 (288)
                      -.++++|.+|+||||+++.|+|....
T Consensus       121 ~~v~~vG~~nvGKSsliN~l~~~~~~  146 (282)
T 1puj_A          121 IRALIIGIPNVGKSTLINRLAKKNIA  146 (282)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred             ceEEEEecCCCchHHHHHHHhcCcee
Confidence            36899999999999999999997643

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.86  E-value=0.037  Score=45.34  Aligned_cols=23  Identities=22%  Similarity=0.258  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|+.|+||||+++.+++..
T Consensus        22 ~i~v~G~~~~GKSsli~~l~~~~   44 (213)
T 3cph_A           22 KILLIGDSGVGKSCLLVRFVEDK   44 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            57899999999999999998543

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=93.85  E-value=0.038  Score=46.68  Aligned_cols=24  Identities=42%  Similarity=0.423  Sum_probs=20.8

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhC
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTG  264 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G  264 (288)
                      ++-.+.+.|+.||||||+.+.|+-
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456788999999999999999873

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=93.83  E-value=0.042  Score=45.97  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|..|+||||+++.++|..
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~~~   61 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAGVH   61 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            47899999999999999999743

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=93.82  E-value=0.0092  Score=54.06  Aligned_cols=48  Identities=13%  Similarity=0.071  Sum_probs=37.8

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV  275 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i  275 (288)
                      +.+.++.+.-++++|+.+.|.|++|+||||+...++.......+.+.+
T Consensus        32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~   79 (338)
T 4a1f_A           32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAV   79 (338)
T ss_dssp             SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEE
T ss_pred             CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            356788887799999999999999999999998887654444455543

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=93.81  E-value=0.031  Score=48.76  Aligned_cols=24  Identities=21%  Similarity=0.322  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      .++++|..|+||||+++.|+|...
T Consensus        28 ~i~vvG~~~~GKSSLln~l~g~~~   51 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENFVGRDF   51 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred             eEEEEeCCCCCHHHHHHHHHCCCc
Confidence            688999999999999999999764

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=93.81  E-value=0.038  Score=47.39  Aligned_cols=26  Identities=27%  Similarity=0.543  Sum_probs=22.8

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +|..+.+.|+.||||||..+.|...+
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l   51 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETL   51 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999986544

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=93.75  E-value=0.016  Score=51.69  Aligned_cols=37  Identities=14%  Similarity=0.143  Sum_probs=32.1

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG  264 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G  264 (288)
                      +.+.++++.-++++|+.+.|.|++|+||||+...++.
T Consensus        54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~   90 (315)
T 3bh0_A           54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK   90 (315)
T ss_dssp             SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            3567888887899999999999999999999877763

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=93.69  E-value=0.041  Score=44.48  Aligned_cols=22  Identities=18%  Similarity=0.164  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      .++++|+.|+||||+++.+++.
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999854

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=93.62  E-value=0.029  Score=52.66  Aligned_cols=23  Identities=26%  Similarity=0.524  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++|+|.+|+||||+++.|+|..
T Consensus        25 ~V~lvG~~nvGKSTL~n~l~~~~   47 (456)
T 4dcu_A           25 VVAIVGRPNVGKSTIFNRIAGER   47 (456)
T ss_dssp             EEEEECSSSSSHHHHHHHHEEEE
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            78999999999999999999853

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=93.55  E-value=0.062  Score=43.98  Aligned_cols=34  Identities=15%  Similarity=0.010  Sum_probs=26.0

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      +..++.....+ .|.-+.+.|++|+||||+...|.
T Consensus         4 ~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~   37 (181)
T 3tqf_A            4 KQTWHANFLVI-DKMGVLITGEANIGKSELSLALI   37 (181)
T ss_dssp             CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             cEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            34556666655 48889999999999999887653

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=93.53  E-value=0.032  Score=44.94  Aligned_cols=22  Identities=36%  Similarity=0.412  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      .++++|+.|+||||+++.+.+.
T Consensus        24 ~i~v~G~~~~GKssli~~l~~~   45 (189)
T 2x77_A           24 RVLMLGLDNAGKTSILYRLHLG   45 (189)
T ss_dssp             EEEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5789999999999999999754

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=93.53  E-value=0.077  Score=44.39  Aligned_cols=36  Identities=19%  Similarity=0.243  Sum_probs=29.0

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      ...+++....+ .|..+.|.|++|+||||+..-|...
T Consensus        22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            34677776666 5788999999999999999988754

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=93.44  E-value=0.054  Score=51.15  Aligned_cols=30  Identities=30%  Similarity=0.430  Sum_probs=27.0

Q ss_pred             EEEeCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         237 FGVGRGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +.+.+||..+|.|+.|+||||++.++..-.
T Consensus       148 ~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~  177 (482)
T 2ck3_D          148 APYAKGGKIGLFGGAGVGKTVLIMELINNV  177 (482)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             cccccCCeeeeecCCCCChHHHHHHHHHhh
Confidence            578899999999999999999999987654

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=93.43  E-value=0.051  Score=49.15  Aligned_cols=27  Identities=22%  Similarity=0.332  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      ++..+.|+||+|+||||+...|+....
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence            456889999999999999999998763

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=93.43  E-value=0.048  Score=50.56  Aligned_cols=35  Identities=26%  Similarity=0.233  Sum_probs=27.4

Q ss_pred             EeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219         239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN  277 (288)
Q Consensus       239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g  277 (288)
                      -.+.+.+.+.|++||||||+.+.|....    |-..++.
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~~~----~~~~i~~  289 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNR  289 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTGGG----TCEECCG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhc----CcEEEcc
Confidence            4567899999999999999999997543    4455544

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=93.37  E-value=0.013  Score=54.80  Aligned_cols=33  Identities=30%  Similarity=0.376  Sum_probs=26.2

Q ss_pred             CEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219         243 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV  275 (288)
Q Consensus       243 e~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i  275 (288)
                      .+++++|++|+||||+...|++.......++.+
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVll  132 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPAL  132 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            588999999999999999999876544334444

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=93.30  E-value=0.044  Score=48.71  Aligned_cols=34  Identities=18%  Similarity=0.241  Sum_probs=27.6

Q ss_pred             ceeeeE-EEEeCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219         231 AVNQIS-FGVGRGECFGLLGLNGAGKTTTFKMLTG  264 (288)
Q Consensus       231 av~~is-~~v~~Ge~~gllG~NGaGKTT~~~~l~G  264 (288)
                      .+|.+- =++++|+.+.|.|++|+||||+...++.
T Consensus        86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            444432 2789999999999999999999987774

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=93.28  E-value=0.026  Score=51.38  Aligned_cols=49  Identities=18%  Similarity=0.203  Sum_probs=35.1

Q ss_pred             ccceeeeE--EEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC-ceEEEcc
Q psy7219         229 KPAVNQIS--FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS-GNAYVMN  277 (288)
Q Consensus       229 ~~av~~is--~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~-G~i~i~g  277 (288)
                      .+.+|.+-  =++++|+.+.|.|++|+||||+...++....... ..++++.
T Consensus        48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~   99 (356)
T 1u94_A           48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA   99 (356)
T ss_dssp             CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            34566653  1599999999999999999999887775433222 3556665

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=93.27  E-value=0.046  Score=47.32  Aligned_cols=29  Identities=24%  Similarity=0.250  Sum_probs=24.5

Q ss_pred             EeCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         239 VGRGECFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      +.++..+-|.||.|+||||+.+.++....
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~   76 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATETN   76 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            44566788999999999999999987753

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=93.27  E-value=0.051  Score=50.20  Aligned_cols=32  Identities=25%  Similarity=0.332  Sum_probs=27.7

Q ss_pred             eeEEEEeCCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219         234 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       234 ~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      |.=+-+.+||..+|+|+.|+||||++++|+..
T Consensus       167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~  198 (427)
T 3l0o_A          167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANG  198 (427)
T ss_dssp             HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred             hhcccccCCceEEEecCCCCChhHHHHHHHHH
Confidence            34466889999999999999999999988764

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=93.25  E-value=0.019  Score=57.71  Aligned_cols=32  Identities=19%  Similarity=0.186  Sum_probs=26.5

Q ss_pred             EeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC
Q psy7219         239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS  270 (288)
Q Consensus       239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~  270 (288)
                      +..|+.+.+.|+||+||||++.++.+...+..
T Consensus       106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~  137 (773)
T 2xau_A          106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPH  137 (773)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGG
T ss_pred             HhCCCeEEEECCCCCCHHHHHHHHHHHhcccc
Confidence            56789999999999999999988877655444

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=93.25  E-value=0.013  Score=52.40  Aligned_cols=37  Identities=27%  Similarity=0.298  Sum_probs=26.3

Q ss_pred             ceeeeEEEEeCC--CEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         231 AVNQISFGVGRG--ECFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       231 av~~is~~v~~G--e~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      +++.+.-.+..|  ..+.|.||+|+||||+.+.+++...
T Consensus        45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            334444334444  3488999999999999999988753

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=93.17  E-value=0.041  Score=45.10  Aligned_cols=23  Identities=22%  Similarity=0.247  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|..|+||||+++.+++..
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~~   53 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTGA   53 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhhCC
Confidence            46799999999999999997543

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=93.15  E-value=0.06  Score=42.76  Aligned_cols=25  Identities=32%  Similarity=0.327  Sum_probs=20.9

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         242 GECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +..+.|.|+.|+||||+.+.+....
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4567799999999999999887654

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=93.14  E-value=0.05  Score=45.23  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|..|+||||+++-+++..
T Consensus        40 ~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           40 AFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            57799999999999998888653

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=93.00  E-value=0.022  Score=46.37  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=3.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      .++++|+.|+||||+++.+++.
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5779999999999999988876

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=92.96  E-value=0.058  Score=45.80  Aligned_cols=26  Identities=27%  Similarity=0.447  Sum_probs=22.5

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +|-.+.+-|+.||||||..+.|....
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~~l   45 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAEYL   45 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57789999999999999999987544

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=92.92  E-value=0.07  Score=41.58  Aligned_cols=27  Identities=22%  Similarity=0.220  Sum_probs=22.0

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219         242 GECFGLLGLNGAGKTTTFKMLTGAIKP  268 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l~G~~~p  268 (288)
                      +..+-|.|+.|+|||++.+.+......
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~~~   50 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFGRN   50 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence            345669999999999999999876543

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=92.84  E-value=0.049  Score=46.05  Aligned_cols=26  Identities=27%  Similarity=0.364  Sum_probs=21.4

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      ++..++-|+||.||||+|..+.|+-.
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            34457789999999999999999843

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=92.83  E-value=0.065  Score=45.53  Aligned_cols=28  Identities=29%  Similarity=0.202  Sum_probs=23.0

Q ss_pred             EeCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         239 VGRGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +++...+-|.||.|+||||+.+.+....
T Consensus        36 ~~~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           36 AKVPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            3445567899999999999999998754

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=92.83  E-value=0.042  Score=45.35  Aligned_cols=23  Identities=26%  Similarity=0.531  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .+.|.|+.|+||||+.+.+....
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~~   69 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKGL   69 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            67899999999999999987544

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=92.75  E-value=0.068  Score=44.35  Aligned_cols=30  Identities=27%  Similarity=0.272  Sum_probs=23.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC-----CCCCCceE
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA-----IKPTSGNA  273 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~-----~~pt~G~i  273 (288)
                      .+.++|..|+||||+++.+++.     +.||.|.-
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~   63 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFEN   63 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeee
Confidence            5779999999999999998764     35555543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=92.74  E-value=0.028  Score=45.91  Aligned_cols=25  Identities=20%  Similarity=0.259  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIKP  268 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~p  268 (288)
                      .++++|..|+||||+++.+++...+
T Consensus        35 ki~vvG~~~~GKSsli~~l~~~~~~   59 (199)
T 3l0i_B           35 KLLLIGDSGVGKSCLLLRFADDTYT   59 (199)
T ss_dssp             EEEEECCTTSCCTTTTTSSBCCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4679999999999999999986543

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=92.73  E-value=0.072  Score=44.77  Aligned_cols=34  Identities=29%  Similarity=0.372  Sum_probs=27.3

Q ss_pred             ccceeeeEE-EEeCCCEEEEEcCCCCChHHHHHHH
Q psy7219         229 KPAVNQISF-GVGRGECFGLLGLNGAGKTTTFKML  262 (288)
Q Consensus       229 ~~av~~is~-~v~~Ge~~gllG~NGaGKTT~~~~l  262 (288)
                      .+.+|++-= ++++|+.+-+.|+.|+||||+..-+
T Consensus        16 i~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~   50 (251)
T 2zts_A           16 IPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQF   50 (251)
T ss_dssp             CTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHH
T ss_pred             cHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHH
Confidence            345666543 7999999999999999999997544

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=92.71  E-value=0.047  Score=47.04  Aligned_cols=27  Identities=26%  Similarity=0.229  Sum_probs=23.3

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +++-.+.+-|..||||||+.+.|....
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence            466788999999999999999998765

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=92.68  E-value=0.041  Score=49.88  Aligned_cols=24  Identities=29%  Similarity=0.527  Sum_probs=20.9

Q ss_pred             CEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         243 ECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       243 e~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      -+++++|+.|+||||+++.|++..
T Consensus        80 ~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           80 HRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            378999999999999999997554

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=92.64  E-value=0.051  Score=48.16  Aligned_cols=28  Identities=21%  Similarity=0.182  Sum_probs=23.1

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhCCCCCC
Q psy7219         242 GECFGLLGLNGAGKTTTFKMLTGAIKPT  269 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l~G~~~pt  269 (288)
                      +..+.|.||+|+||||+.+.+.+...+.
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~~   64 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR   64 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence            3467799999999999999999876543

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=92.35  E-value=0.037  Score=51.75  Aligned_cols=38  Identities=16%  Similarity=0.163  Sum_probs=27.7

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhCCCCC---CCceEEEcccc
Q psy7219         242 GECFGLLGLNGAGKTTTFKMLTGAIKP---TSGNAYVMNHS  279 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l~G~~~p---t~G~i~i~g~~  279 (288)
                      +..+.|.|++|+||||+++.+.+....   ..--++++..+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~  170 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK  170 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence            467889999999999999999986632   22334555433

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=92.06  E-value=0.091  Score=47.51  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=26.7

Q ss_pred             eeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         233 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       233 ~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +.+.+.++---.++|+|..+|||||+++.|++..
T Consensus       149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~~  182 (342)
T 1lnz_A          149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAK  182 (342)
T ss_dssp             EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEEC
T ss_pred             hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCC
Confidence            4455555555568999999999999999999753

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=92.03  E-value=0.073  Score=42.25  Aligned_cols=25  Identities=36%  Similarity=0.267  Sum_probs=20.7

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         242 GECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +..+-|.|+.|+||||+.+.+....
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4456789999999999999887654

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=91.98  E-value=0.057  Score=44.77  Aligned_cols=28  Identities=46%  Similarity=0.526  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCChHHHHHH-HhCC----CCCCCc
Q psy7219         244 CFGLLGLNGAGKTTTFKM-LTGA----IKPTSG  271 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~-l~G~----~~pt~G  271 (288)
                      .++++|..|+||||+++. +.|.    +.|+.|
T Consensus        17 ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~   49 (221)
T 3gj0_A           17 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG   49 (221)
T ss_dssp             EEEEEECTTSSHHHHHTTBHHHHHTCEEETTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc
Confidence            467999999999999998 5543    456666

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=91.98  E-value=0.043  Score=51.27  Aligned_cols=39  Identities=15%  Similarity=0.072  Sum_probs=33.2

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      .+.++++.-++++|+.+.|.|++|+||||+...++....
T Consensus       187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a  225 (444)
T 2q6t_A          187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA  225 (444)
T ss_dssp             CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            456788877899999999999999999999887776544

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=91.93  E-value=0.068  Score=50.66  Aligned_cols=31  Identities=35%  Similarity=0.427  Sum_probs=27.4

Q ss_pred             EEEeCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         237 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      +.+.+|+..||.|..|.||||++.+|..-..
T Consensus       160 ~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a  190 (498)
T 1fx0_B          160 APYRRGGKIGLFGGAGVGKTVLIMELINNIA  190 (498)
T ss_dssp             SCCCTTCCEEEEECSSSSHHHHHHHHHHHTT
T ss_pred             cccccCCeEEeecCCCCCchHHHHHHHHHHH
Confidence            5688999999999999999999998877543

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=91.68  E-value=0.1  Score=47.10  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|..|+||||+++.|+|..
T Consensus        33 ~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           33 QIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             EEEEECBTTSSHHHHHHTTTTSC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC
Confidence            67899999999999999999975

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=90.88  E-value=0.034  Score=45.52  Aligned_cols=22  Identities=23%  Similarity=0.160  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      .++++|..|+||||+++.+++.
T Consensus        32 ki~v~G~~~~GKSsli~~l~~~   53 (204)
T 3th5_A           32 KCVVVGDGAVGKTCLLISYTTN   53 (204)
Confidence            5789999999999999877753

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=91.49  E-value=0.078  Score=48.39  Aligned_cols=25  Identities=20%  Similarity=0.294  Sum_probs=22.9

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      ++..++++|..|+||||+++.|+|.
T Consensus       161 ~~~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          161 EGGDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCcEEEEcCCCCchHHHHHHHHhh
Confidence            5667899999999999999999986

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=91.43  E-value=0.1  Score=49.74  Aligned_cols=22  Identities=41%  Similarity=0.606  Sum_probs=19.7

Q ss_pred             CCEEEEEcCCCCChHHHHHHHh
Q psy7219         242 GECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      ..+++++|++|+||||+..-|+
T Consensus       101 ~~vI~ivG~~GvGKTTl~~kLA  122 (504)
T 2j37_W          101 QNVIMFVGLQGSGKTTTCSKLA  122 (504)
T ss_dssp             -EEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4478999999999999999999

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=91.38  E-value=0.066  Score=50.46  Aligned_cols=24  Identities=17%  Similarity=0.344  Sum_probs=21.1

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhCC
Q psy7219         242 GECFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      |=.++++|+.|+||||+++.|+|.
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~  247 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQS  247 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCC
Confidence            335889999999999999999875

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=91.11  E-value=0.076  Score=48.69  Aligned_cols=23  Identities=35%  Similarity=0.624  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .+||+|..-+||||+|+.|||..
T Consensus        74 ~V~ivG~PNvGKSTL~n~Lt~~~   96 (376)
T 4a9a_A           74 SVGFVGFPSVGKSTLLSKLTGTE   96 (376)
T ss_dssp             EEEEECCCCHHHHHHHHHHHSBC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999864

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=91.04  E-value=0.12  Score=49.45  Aligned_cols=23  Identities=39%  Similarity=0.446  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|..|+||||+++.++|..
T Consensus        43 kV~lvG~~~vGKSSLl~~l~~~~   65 (535)
T 3dpu_A           43 KVHLIGDGMAGKTSLLKQLIGET   65 (535)
T ss_dssp             EEEEESSSCSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            56799999999999999999865

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=90.93  E-value=0.087  Score=48.07  Aligned_cols=25  Identities=20%  Similarity=0.298  Sum_probs=22.9

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      ++..++++|..|+||||+++.|+|.
T Consensus       159 ~~~~i~~vG~~nvGKStliN~L~~~  183 (368)
T 3h2y_A          159 GGKDVYVVGCTNVGKSTFINRMIKE  183 (368)
T ss_dssp             TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred             ccceEEEecCCCCChhHHHHHHHhh
Confidence            5678999999999999999999986

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=90.69  E-value=0.11  Score=46.59  Aligned_cols=39  Identities=23%  Similarity=0.330  Sum_probs=28.4

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCCCC-------CCceEEEcccc
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAIKP-------TSGNAYVMNHS  279 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~p-------t~G~i~i~g~~  279 (288)
                      ++..+.|.||.|+||||+.+.+......       ....++++..+
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~   88 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH   88 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence            4567889999999999999999876533       23345666543

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=90.62  E-value=0.13  Score=49.56  Aligned_cols=24  Identities=21%  Similarity=0.158  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      .++++|..|+||||+++.|+|..-
T Consensus        67 ~V~vvG~~n~GKSTLIN~Llg~~~   90 (550)
T 2qpt_A           67 MVLVAGQYSTGKTSFIQYLLEQEV   90 (550)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcc
Confidence            788999999999999999999753

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=90.48  E-value=0.12  Score=48.97  Aligned_cols=23  Identities=30%  Similarity=0.345  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|+.|+||||+++.|+|..
T Consensus       235 kV~ivG~~nvGKSSLln~L~~~~  257 (476)
T 3gee_A          235 STVIAGKPNAGKSTLLNTLLGQE  257 (476)
T ss_dssp             EEEEECCTTSSHHHHHHHCC---
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48899999999999999999874

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=90.39  E-value=0.17  Score=47.08  Aligned_cols=24  Identities=25%  Similarity=0.462  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      .++++|..|+||||+++.++|...
T Consensus       177 ki~lvG~~nvGKSSLin~l~~~~~  200 (436)
T 2hjg_A          177 QFCLIGRPNVGKSSLVNAMLGEER  200 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTT
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCCc
Confidence            689999999999999999998754

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=90.30  E-value=0.14  Score=45.84  Aligned_cols=23  Identities=35%  Similarity=0.362  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|..|+||||+++.+++..
T Consensus       167 kI~ivG~~~vGKSsLl~~l~~~~  189 (329)
T 3o47_A          167 RILMVGLDAAGKTTILYKLKLGE  189 (329)
T ss_dssp             EEEEEESTTSSHHHHHHHTCSSC
T ss_pred             eEEEECCCCccHHHHHHHHhCCC
Confidence            67899999999999999998764

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=90.25  E-value=0.17  Score=45.25  Aligned_cols=38  Identities=21%  Similarity=0.287  Sum_probs=29.5

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~  278 (288)
                      +|..+-|.||.|+||||+.+.+..........+.+++.
T Consensus        69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~  106 (368)
T 3uk6_A           69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGS  106 (368)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccch
Confidence            45688899999999999999999877654455555543

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=90.22  E-value=0.18  Score=43.90  Aligned_cols=26  Identities=27%  Similarity=0.349  Sum_probs=20.8

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      ++..+-|.|+.|+||||+.+.++...
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            34567899999999999998766544

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=90.17  E-value=0.16  Score=44.65  Aligned_cols=31  Identities=23%  Similarity=0.076  Sum_probs=23.4

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhC-----CCCCCCce
Q psy7219         242 GECFGLLGLNGAGKTTTFKMLTG-----AIKPTSGN  272 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l~G-----~~~pt~G~  272 (288)
                      .-.++++|..|+||||+++.+++     .+.||.|.
T Consensus       155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~  190 (332)
T 2wkq_A          155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD  190 (332)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEE
T ss_pred             eeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccc
Confidence            34688999999999999977763     34555554

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=90.10  E-value=0.2  Score=48.73  Aligned_cols=24  Identities=25%  Similarity=0.416  Sum_probs=21.9

Q ss_pred             CEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         243 ECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       243 e~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      -.++++|+.|+||||+++.|+|..
T Consensus        39 ~~VaivG~pnvGKStLiN~L~g~~   62 (592)
T 1f5n_A           39 VVVAIVGLYRTGKSYLMNKLAGKK   62 (592)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             cEEEEECCCCCCHHHHHHhHcCCC
Confidence            468899999999999999999975

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=90.02  E-value=0.1  Score=49.13  Aligned_cols=32  Identities=9%  Similarity=0.089  Sum_probs=28.5

Q ss_pred             EEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219         237 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP  268 (288)
Q Consensus       237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p  268 (288)
                      +.+.+||..+|.|..|.||||++++|+.....
T Consensus       147 ~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~  178 (469)
T 2c61_A          147 NTLVRGQKLPIFSASGLPHNEIALQIARQASV  178 (469)
T ss_dssp             SCCBTTCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred             eccccCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            57889999999999999999999999976543

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=89.59  E-value=0.055  Score=51.29  Aligned_cols=24  Identities=21%  Similarity=0.209  Sum_probs=21.4

Q ss_pred             CEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         243 ECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       243 e~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      =.++|+|..++||||+++.|+|..
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~~  267 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNED  267 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHT
T ss_pred             CEEEEECcCCCcHHHHHHHHHCCC
Confidence            368899999999999999999864

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=89.58  E-value=0.2  Score=42.48  Aligned_cols=21  Identities=29%  Similarity=0.308  Sum_probs=18.9

Q ss_pred             CEEEEEcCCCCChHHHHHHHh
Q psy7219         243 ECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       243 e~~gllG~NGaGKTT~~~~l~  263 (288)
                      -+..+.|..|+||||+...|+
T Consensus        15 ~i~~~~GkgGvGKTTl~~~La   35 (262)
T 1yrb_A           15 MIVVFVGTAGSGKTTLTGEFG   35 (262)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCCHHHHHHHHH
Confidence            367789999999999999998

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=89.56  E-value=0.071  Score=45.70  Aligned_cols=21  Identities=38%  Similarity=0.493  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChHHHHHHHhCC
Q psy7219         245 FGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       245 ~gllG~NGaGKTT~~~~l~G~  265 (288)
                      +.|.||.|+||||+.+.+...
T Consensus        47 vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            568899999999999999864

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=89.50  E-value=0.19  Score=40.74  Aligned_cols=21  Identities=33%  Similarity=0.346  Sum_probs=18.7

Q ss_pred             EEEEcCCCCChHHHHHHHhCC
Q psy7219         245 FGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       245 ~gllG~NGaGKTT~~~~l~G~  265 (288)
                      +.|.|+.|+||||+.+.+...
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999988764

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=89.49  E-value=0.24  Score=49.00  Aligned_cols=23  Identities=30%  Similarity=0.303  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|+.|+||||+++.|+|..
T Consensus        71 ~V~VvG~~naGKSSLlNaLlg~~   93 (695)
T 2j69_A           71 RLLVLGDMKRGKSTFLNALIGEN   93 (695)
T ss_dssp             EEEEECCTTSCHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999865

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=89.43  E-value=0.22  Score=42.59  Aligned_cols=21  Identities=24%  Similarity=0.466  Sum_probs=19.5

Q ss_pred             EEEEEcCC---------CCChHHHHHHHhC
Q psy7219         244 CFGLLGLN---------GAGKTTTFKMLTG  264 (288)
Q Consensus       244 ~~gllG~N---------GaGKTT~~~~l~G  264 (288)
                      .++++|..         |+||||+++-+++
T Consensus        21 ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~   50 (255)
T 3c5h_A           21 NISVVGLSGTEKEKGQCGIGKSCLCNRFVR   50 (255)
T ss_dssp             EEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred             EEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence            46799999         9999999999998

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=89.43  E-value=0.15  Score=39.52  Aligned_cols=25  Identities=16%  Similarity=-0.004  Sum_probs=20.9

Q ss_pred             CEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         243 ECFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       243 e~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      ..+-|.|+.|+|||++.+.+.....
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~~~   52 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKNGT   52 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred             CcEEEECCCCccHHHHHHHHHHhCC
Confidence            3466899999999999999987643

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=89.41  E-value=0.23  Score=43.99  Aligned_cols=26  Identities=19%  Similarity=0.262  Sum_probs=22.5

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         242 GECFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      ++.+-|.|+.|+|||++.+.+.....
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            67888999999999999999886544

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=89.37  E-value=0.22  Score=45.36  Aligned_cols=35  Identities=23%  Similarity=0.282  Sum_probs=27.9

Q ss_pred             cceeeeEE--EEeCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219         230 PAVNQISF--GVGRGECFGLLGLNGAGKTTTFKMLTG  264 (288)
Q Consensus       230 ~av~~is~--~v~~Ge~~gllG~NGaGKTT~~~~l~G  264 (288)
                      +.+|.+-=  ++++|+.+-|.|+.|+||||+...++.
T Consensus        60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~   96 (366)
T 1xp8_A           60 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA   96 (366)
T ss_dssp             HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence            45555433  689999999999999999999876654

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=89.24  E-value=0.17  Score=42.47  Aligned_cols=28  Identities=18%  Similarity=0.210  Sum_probs=23.0

Q ss_pred             EeCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         239 VGRGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +++.-++.+-||.|+||||+...|+...
T Consensus        55 iPkkn~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           55 TPKKNCLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            5555688899999999999988887654

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=89.16  E-value=0.24  Score=47.06  Aligned_cols=31  Identities=23%  Similarity=0.347  Sum_probs=28.0

Q ss_pred             EEEeCCCEEEEEcCCCCChHHH-HHHHhCCCC
Q psy7219         237 FGVGRGECFGLLGLNGAGKTTT-FKMLTGAIK  267 (288)
Q Consensus       237 ~~v~~Ge~~gllG~NGaGKTT~-~~~l~G~~~  267 (288)
                      +.+.+||..+|.|+.|+||||+ +.+|.....
T Consensus       170 ~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~  201 (515)
T 2r9v_A          170 IPIGRGQRELIIGDRQTGKTAIAIDTIINQKG  201 (515)
T ss_dssp             SCEETTCBEEEEEETTSSHHHHHHHHHHTTTT
T ss_pred             cccccCCEEEEEcCCCCCccHHHHHHHHHhhc
Confidence            5688999999999999999999 889988764

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=89.12  E-value=0.22  Score=45.33  Aligned_cols=21  Identities=33%  Similarity=0.388  Sum_probs=18.4

Q ss_pred             CEEEEEcCCCCChHHHHHHHh
Q psy7219         243 ECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       243 e~~gllG~NGaGKTT~~~~l~  263 (288)
                      ..+.|+|..||||||++|.+.
T Consensus        34 ~killlG~~~SGKST~~kq~~   54 (362)
T 1zcb_A           34 VKILLLGAGESGKSTFLKQMR   54 (362)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHH
Confidence            367799999999999999884

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=89.05  E-value=0.24  Score=44.47  Aligned_cols=34  Identities=21%  Similarity=0.098  Sum_probs=27.3

Q ss_pred             eeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219         232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       232 v~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      ++.+--++++|...-|.|+.|+||||+...+...
T Consensus       113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            3333347889999999999999999999988753

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=88.94  E-value=0.26  Score=44.24  Aligned_cols=25  Identities=36%  Similarity=0.364  Sum_probs=21.5

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         242 GECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +..+.|.|+.|.||||+.+.+....
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            4478899999999999999998654

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=88.92  E-value=0.22  Score=46.45  Aligned_cols=25  Identities=36%  Similarity=0.381  Sum_probs=20.9

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      +..++.++|++|+||||+.--|+..
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~  123 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKF  123 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3458889999999999999888833

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=88.90  E-value=0.22  Score=43.18  Aligned_cols=25  Identities=24%  Similarity=0.312  Sum_probs=21.0

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         242 GECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +..+-|.|+.|+||||+.+.+....
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            3456689999999999999998765

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=88.88  E-value=0.15  Score=45.72  Aligned_cols=42  Identities=5%  Similarity=0.003  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCCCC--------CCceEEEccccccc
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAIKP--------TSGNAYVMNHSIRD  282 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~p--------t~G~i~i~g~~i~~  282 (288)
                      ++.++-|.||.|.|||++.+.+......        .--.+++||..+.+
T Consensus        44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t   93 (318)
T 3te6_A           44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG   93 (318)
T ss_dssp             CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence            5667889999999999999998876632        22467889877654

>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C

Probab=88.86  E-value=0.23  Score=47.65  Aligned_cols=29  Identities=31%  Similarity=0.366  Sum_probs=26.8

Q ss_pred             EEEeCCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219         237 FGVGRGECFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      +.+.+|+..+|.|+.|+|||+++.+|+..
T Consensus       216 ~PigrGqr~~Ifg~~g~GKT~l~~~ia~~  244 (578)
T 3gqb_A          216 FPVAMGGTAAIPGPFGSGKSVTQQSLAKW  244 (578)
T ss_dssp             SCEETTCEEEECCCTTSCHHHHHHHHHHH
T ss_pred             ccccCCCEEeeeCCCCccHHHHHHHHHhc
Confidence            56889999999999999999999999865

>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*

Probab=88.79  E-value=0.25  Score=47.63  Aligned_cols=29  Identities=31%  Similarity=0.376  Sum_probs=26.7

Q ss_pred             EEEeCCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219         237 FGVGRGECFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      +-+.+|+..+|.|+.|+|||+++.+|+..
T Consensus       227 ~PigrGqr~~Ifgg~g~GKT~L~~~ia~~  255 (600)
T 3vr4_A          227 FPVTKGGAAAVPGPFGAGKTVVQHQIAKW  255 (600)
T ss_dssp             SCCBTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCccCCCEEeeecCCCccHHHHHHHHHhc
Confidence            56889999999999999999999999865

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=88.66  E-value=0.14  Score=49.52  Aligned_cols=35  Identities=23%  Similarity=0.161  Sum_probs=26.9

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV  275 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i  275 (288)
                      .+..+.+.|+.|+||||+++.+..........|.+
T Consensus       203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~  237 (574)
T 3e1s_A          203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGL  237 (574)
T ss_dssp             TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence            57899999999999999999987655443444444

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=88.57  E-value=0.15  Score=47.82  Aligned_cols=37  Identities=11%  Similarity=0.150  Sum_probs=31.0

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP  268 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p  268 (288)
                      |+|.+ +.+.+||..+|.|..|.||||++.+|+.....
T Consensus       141 aID~l-~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~  177 (465)
T 3vr4_D          141 AIDHL-NTLVRGQKLPVFSGSGLPHKELAAQIARQATV  177 (465)
T ss_dssp             HHHTT-SCCBTTCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred             EEecc-cccccCCEEEEeCCCCcChHHHHHHHHHHHHh
Confidence            44444 67889999999999999999999999876554

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*

Probab=88.44  E-value=0.13  Score=48.23  Aligned_cols=32  Identities=9%  Similarity=0.063  Sum_probs=28.6

Q ss_pred             EEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219         237 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP  268 (288)
Q Consensus       237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p  268 (288)
                      +.+.+||..+|.|..|.||||++.+|+.....
T Consensus       142 ~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a  173 (464)
T 3gqb_B          142 NTLVRGQKLPIFSGSGLPANEIAAQIARQATV  173 (464)
T ss_dssp             SCCBTTCBCCEEEETTSCHHHHHHHHHHHCBC
T ss_pred             cccccCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence            57889999999999999999999999876654

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=88.39  E-value=0.089  Score=49.32  Aligned_cols=30  Identities=23%  Similarity=0.261  Sum_probs=24.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCCCCceE
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNA  273 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~pt~G~i  273 (288)
                      .+-|.||.|+||||+.+.|.......-..+
T Consensus        52 ~vLL~GppGtGKTtlAr~ia~~~~~~f~~l   81 (447)
T 3pvs_A           52 SMILWGPPGTGKTTLAEVIARYANADVERI   81 (447)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence            467899999999999999998876543333

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=88.33  E-value=0.25  Score=44.53  Aligned_cols=25  Identities=28%  Similarity=0.353  Sum_probs=21.3

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         242 GECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +..+.|.||+|+||||+.+.|+...
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            3456789999999999999998765

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=88.18  E-value=0.27  Score=46.14  Aligned_cols=24  Identities=33%  Similarity=0.290  Sum_probs=20.7

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhCC
Q psy7219         242 GECFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      ..++.++|..||||||+.+.|+..
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~   62 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRY   62 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            447889999999999999999753

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=88.13  E-value=0.26  Score=48.15  Aligned_cols=26  Identities=46%  Similarity=0.523  Sum_probs=22.0

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +|..+.|.|..||||||+.+.|.-..
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L   76 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYL   76 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            35578899999999999999997644

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=88.08  E-value=0.44  Score=42.46  Aligned_cols=34  Identities=24%  Similarity=0.248  Sum_probs=26.8

Q ss_pred             cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219         230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG  264 (288)
Q Consensus       230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G  264 (288)
                      ..+++....+ .|.-+.+.|++|+||||+...|..
T Consensus       136 ~~~H~~~v~~-~g~gvli~G~sG~GKStlal~l~~  169 (312)
T 1knx_A          136 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN  169 (312)
T ss_dssp             EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             ceeEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            4677766666 478899999999999988877653

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=88.06  E-value=0.25  Score=42.43  Aligned_cols=22  Identities=23%  Similarity=0.156  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      .+-|.||.|+||||+.+.+...
T Consensus        66 ~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           66 SVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5668999999999999999875

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A

Probab=88.05  E-value=0.19  Score=48.28  Aligned_cols=29  Identities=31%  Similarity=0.398  Sum_probs=26.5

Q ss_pred             EEEeCCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219         237 FGVGRGECFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      +-+.+|+..+|.|+.|+|||+++++|+..
T Consensus       222 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~  250 (588)
T 3mfy_A          222 FPQAKGGTAAIPGPAGSGKTVTQHQLAKW  250 (588)
T ss_dssp             SCEETTCEEEECSCCSHHHHHHHHHHHHH
T ss_pred             CCcccCCeEEeecCCCCCHHHHHHHHHhc
Confidence            56889999999999999999999999754

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=87.98  E-value=0.28  Score=46.30  Aligned_cols=23  Identities=39%  Similarity=0.471  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|+.++||||+++.|+|..
T Consensus        21 ~I~iiG~~d~GKSTLi~~L~~~~   43 (482)
T 1wb1_A           21 NLGIFGHIDHGKTTLSKVLTEIA   43 (482)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCChHHHHHHHHHCCC
Confidence            57899999999999999999866

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=87.71  E-value=0.34  Score=43.69  Aligned_cols=26  Identities=27%  Similarity=0.248  Sum_probs=22.3

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +...+.|.|+.|+||||+.+.++...
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHc
Confidence            44567899999999999999998765

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=87.63  E-value=0.29  Score=42.87  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .+.|.||.|+|||++.+.++...
T Consensus        38 ~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           38 ILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            45677999999999999998765

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=87.62  E-value=0.33  Score=43.14  Aligned_cols=26  Identities=23%  Similarity=0.201  Sum_probs=22.3

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +...+-|.||.|+||||+.+.++...
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHc
Confidence            34567799999999999999999875

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=87.42  E-value=0.32  Score=47.40  Aligned_cols=24  Identities=33%  Similarity=0.281  Sum_probs=21.4

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhCC
Q psy7219         242 GECFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      .=.++++|+.++||||+++.|++.
T Consensus       167 ~lkV~ivG~~n~GKSTLin~Ll~~  190 (611)
T 3izq_1          167 HLSFVVLGHVDAGKSTLMGRLLYD  190 (611)
T ss_dssp             CCEEEEECCSSSCHHHHHHHHHSC
T ss_pred             ceEEEEEECCCCCHHHHHHHHHHh
Confidence            347899999999999999999876

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=87.41  E-value=0.26  Score=46.96  Aligned_cols=29  Identities=10%  Similarity=-0.074  Sum_probs=24.6

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTGAIKP  268 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~~p  268 (288)
                      ++|-++.+.|..||||||+-+.|...+.-
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            45678889999999999999999876654

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*

Probab=87.30  E-value=0.27  Score=46.72  Aligned_cols=31  Identities=26%  Similarity=0.317  Sum_probs=28.2

Q ss_pred             EEEeCCCEEEEEcCCCCChHHH-HHHHhCCCC
Q psy7219         237 FGVGRGECFGLLGLNGAGKTTT-FKMLTGAIK  267 (288)
Q Consensus       237 ~~v~~Ge~~gllG~NGaGKTT~-~~~l~G~~~  267 (288)
                      +.+.+||..+|.|+.|+||||+ +.+|.....
T Consensus       158 ~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~  189 (507)
T 1fx0_A          158 IPVGRGQRELIIGDRQTGKTAVATDTILNQQG  189 (507)
T ss_dssp             SCCBTTCBCBEEESSSSSHHHHHHHHHHTCCT
T ss_pred             cccccCCEEEEecCCCCCccHHHHHHHHHhhc
Confidence            5788999999999999999999 889988765

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=87.27  E-value=0.32  Score=46.75  Aligned_cols=26  Identities=38%  Similarity=0.575  Sum_probs=22.4

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +|..+.+.|..||||||+.+.|....
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L  396 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATML  396 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999997643

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B

Probab=87.21  E-value=0.25  Score=46.88  Aligned_cols=31  Identities=26%  Similarity=0.367  Sum_probs=27.6

Q ss_pred             EEEeCCCEEEEEcCCCCChHHH-HHHHhCCCC
Q psy7219         237 FGVGRGECFGLLGLNGAGKTTT-FKMLTGAIK  267 (288)
Q Consensus       237 ~~v~~Ge~~gllG~NGaGKTT~-~~~l~G~~~  267 (288)
                      +.+.+||..+|.|+.|.||||+ +.+|.....
T Consensus       157 ~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~  188 (502)
T 2qe7_A          157 IPIGRGQRELIIGDRQTGKTTIAIDTIINQKG  188 (502)
T ss_dssp             SCCBTTCBCEEEECSSSCHHHHHHHHHHGGGS
T ss_pred             cccccCCEEEEECCCCCCchHHHHHHHHHhhc
Confidence            5788999999999999999999 888888754

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=87.00  E-value=0.33  Score=46.98  Aligned_cols=26  Identities=23%  Similarity=0.280  Sum_probs=22.2

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +|-++.+.|..||||||+.+.|.-.+
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L  420 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTL  420 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHh
Confidence            45678899999999999999997654

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=86.99  E-value=0.13  Score=47.93  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|+.|+||||+++.|++..
T Consensus        36 kI~IvG~~~vGKSTLin~L~~~~   58 (423)
T 3qq5_A           36 YIVVAGRRNVGKSSFMNALVGQN   58 (423)
T ss_dssp             EEEEECSCSTTTTTTTTSSCC--
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            57899999999999999999865

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=86.86  E-value=0.36  Score=46.08  Aligned_cols=24  Identities=33%  Similarity=0.339  Sum_probs=20.6

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhC
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTG  264 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G  264 (288)
                      ...++.++|..||||||+-+.|+.
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~   57 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTR   57 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345788999999999999999864

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=86.70  E-value=0.5  Score=40.29  Aligned_cols=37  Identities=16%  Similarity=0.057  Sum_probs=26.9

Q ss_pred             CEEEEEcCCCCChHHHHHHHhCCCCCCCc-eEEEcccc
Q psy7219         243 ECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAYVMNHS  279 (288)
Q Consensus       243 e~~gllG~NGaGKTT~~~~l~G~~~pt~G-~i~i~g~~  279 (288)
                      ..+-|.|+.|+|||++.+.+........+ -+.++..+
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~   67 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA   67 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence            45668999999999999999877654433 44555433

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=86.69  E-value=0.17  Score=47.27  Aligned_cols=36  Identities=14%  Similarity=0.158  Sum_probs=30.0

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG  264 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G  264 (288)
                      .+.++.+.=++++|+.+.|.|+.|.||||+...++.
T Consensus       184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~  219 (444)
T 3bgw_A          184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK  219 (444)
T ss_dssp             CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred             cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence            456777766899999999999999999999866654

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=86.66  E-value=0.35  Score=43.67  Aligned_cols=23  Identities=30%  Similarity=0.416  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .+-|.|+.|+||||+.+.++...
T Consensus        74 ~ill~Gp~GtGKT~la~~la~~l   96 (376)
T 1um8_A           74 NILLIGPTGSGKTLMAQTLAKHL   96 (376)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            46689999999999999998765

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=86.61  E-value=0.3  Score=45.29  Aligned_cols=22  Identities=27%  Similarity=0.161  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      .++++|+.++||||+++.|++.
T Consensus        26 ~i~iiG~~~~GKSTLi~~Ll~~   47 (434)
T 1zun_B           26 RFLTCGNVDDGKSTLIGRLLHD   47 (434)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCHHHHHHHHHhh
Confidence            5789999999999999999754

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=86.59  E-value=0.43  Score=42.25  Aligned_cols=26  Identities=23%  Similarity=0.210  Sum_probs=21.7

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +...+-|.||.|+|||++.+.++...
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~   75 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEA   75 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            34467799999999999999998764

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...

Probab=86.54  E-value=0.29  Score=46.55  Aligned_cols=31  Identities=23%  Similarity=0.387  Sum_probs=27.2

Q ss_pred             EEEeCCCEEEEEcCCCCChHHH-HHHHhCCCC
Q psy7219         237 FGVGRGECFGLLGLNGAGKTTT-FKMLTGAIK  267 (288)
Q Consensus       237 ~~v~~Ge~~gllG~NGaGKTT~-~~~l~G~~~  267 (288)
                      +-+.+||..+|.|+.|.||||+ +.+|.....
T Consensus       157 ~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~  188 (510)
T 2ck3_A          157 VPIGRGQRELIIGDRQTGKTSIAIDTIINQKR  188 (510)
T ss_dssp             SCCBTTCBCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred             cccccCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence            5688999999999999999999 878876654

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=86.27  E-value=0.46  Score=44.35  Aligned_cols=40  Identities=18%  Similarity=0.214  Sum_probs=29.5

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  280 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i  280 (288)
                      ++..+-|.||.|+||||+.+.++.......--+.+++.++
T Consensus        62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~  101 (456)
T 2c9o_A           62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV  101 (456)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGG
T ss_pred             CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHH
Confidence            4556789999999999999999987654434445555443

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=85.79  E-value=0.45  Score=44.39  Aligned_cols=26  Identities=23%  Similarity=0.321  Sum_probs=22.9

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +.-.++++|..|+||||+++.++|..
T Consensus       194 ~~~ki~ivG~~~vGKSslin~l~~~~  219 (456)
T 4dcu_A          194 EVIQFCLIGRPNVGKSSLVNAMLGEE  219 (456)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             ccceeEEecCCCCCHHHHHHHHhCCC
Confidence            44578999999999999999999875

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=85.55  E-value=0.36  Score=43.98  Aligned_cols=20  Identities=20%  Similarity=0.345  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q psy7219         244 CFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~  263 (288)
                      .++++|+.++||||+++.|+
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~   42 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG   42 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            79999999999999999998

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=85.31  E-value=0.54  Score=41.24  Aligned_cols=33  Identities=15%  Similarity=0.156  Sum_probs=26.2

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219         242 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~  278 (288)
                      |..+.|.|+-|.||||+++.+....    |.++++..
T Consensus        31 ~~~v~i~G~~G~GKT~Ll~~~~~~~----~~~~~~~~   63 (350)
T 2qen_A           31 YPLTLLLGIRRVGKSSLLRAFLNER----PGILIDCR   63 (350)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHS----SEEEEEHH
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHc----CcEEEEee
Confidence            4688899999999999999987653    46666543

>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9

Probab=85.16  E-value=0.48  Score=46.90  Aligned_cols=28  Identities=29%  Similarity=0.437  Sum_probs=23.3

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      ++.||+-+.|.+|||||..-|.+...+.
T Consensus        92 ~~nQsIiisGESGAGKTe~tK~i~~yla  119 (697)
T 1lkx_A           92 QENQCVIISGESGAGKTEASKKIMQFLT  119 (697)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEecCCCCCCchhhHHHHHHHHH
Confidence            3678999999999999999988765443

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=85.14  E-value=0.46  Score=42.00  Aligned_cols=23  Identities=26%  Similarity=0.319  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .+-|.|+.|+||||+.+.+....
T Consensus        57 ~vll~G~~GtGKT~la~~ia~~~   79 (338)
T 3pfi_A           57 HILFSGPAGLGKTTLANIISYEM   79 (338)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHT
T ss_pred             eEEEECcCCCCHHHHHHHHHHHh
Confidence            46689999999999999998664

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A

Probab=85.06  E-value=0.46  Score=45.09  Aligned_cols=34  Identities=26%  Similarity=0.444  Sum_probs=28.7

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHH-HHHHhCC
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTT-FKMLTGA  265 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~-~~~l~G~  265 (288)
                      |+|.+ +.+.+||..+|.|..|+||||+ +.+|...
T Consensus       152 aID~l-~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~  186 (513)
T 3oaa_A          152 AVDSM-IPIGRGQRELIIGDRQTGKTALAIDAIINQ  186 (513)
T ss_dssp             HHHHH-SCCBTTCBCEEEESSSSSHHHHHHHHHHTT
T ss_pred             eeccc-cccccCCEEEeecCCCCCcchHHHHHHHhh
Confidence            44444 6788999999999999999999 7888875

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=85.01  E-value=0.38  Score=45.02  Aligned_cols=25  Identities=24%  Similarity=0.332  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIKP  268 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~p  268 (288)
                      .+-|.||.|+||||+.+.|++....
T Consensus        52 ~iLl~GppGtGKT~lar~lA~~l~~   76 (444)
T 1g41_A           52 NILMIGPTGVGKTEIARRLAKLANA   76 (444)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            3568999999999999999988755

>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*

Probab=85.00  E-value=0.45  Score=43.88  Aligned_cols=22  Identities=23%  Similarity=0.369  Sum_probs=18.3

Q ss_pred             CCEEEEEcCCCCChHHHHHHHh
Q psy7219         242 GECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      ...+.++|++|+||||+++.+.
T Consensus        53 ~~h~~i~G~tGsGKs~~~~~li   74 (437)
T 1e9r_A           53 PRHLLVNGATGTGKSVLLRELA   74 (437)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHH
Confidence            4577899999999999986554

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=84.83  E-value=0.21  Score=47.28  Aligned_cols=38  Identities=16%  Similarity=0.127  Sum_probs=30.5

Q ss_pred             ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .+.++.+.-++++|+.+.|.|++|+||||+...++-..
T Consensus       229 ~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~  266 (503)
T 1q57_A          229 CTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQW  266 (503)
T ss_dssp             CTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             hhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHH
Confidence            44666665579999999999999999999987665433

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=84.80  E-value=0.29  Score=53.01  Aligned_cols=42  Identities=19%  Similarity=0.297  Sum_probs=33.5

Q ss_pred             EEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceE-EEcccc
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA-YVMNHS  279 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i-~i~g~~  279 (288)
                      ++++|+.+-|.|++|+||||+...++.......|.+ ++++..
T Consensus       728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ee  770 (1706)
T 3cmw_A          728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH  770 (1706)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred             CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccc
Confidence            699999999999999999999999877665555544 555543

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=84.80  E-value=0.48  Score=42.66  Aligned_cols=27  Identities=22%  Similarity=0.188  Sum_probs=22.5

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .+...+-|.||.|+||||+.+.++...
T Consensus        82 ~~~~~iLL~GppGtGKT~la~ala~~~  108 (355)
T 2qp9_X           82 KPTSGILLYGPPGTGKSYLAKAVATEA  108 (355)
T ss_dssp             CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence            344567899999999999999998765

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=84.45  E-value=0.48  Score=42.51  Aligned_cols=41  Identities=15%  Similarity=0.127  Sum_probs=27.3

Q ss_pred             EEeCCCEEEEEcCCCCChHHHH-HHHhCCCCC--CCceEEEcccc
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTF-KMLTGAIKP--TSGNAYVMNHS  279 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~-~~l~G~~~p--t~G~i~i~g~~  279 (288)
                      ++++| .+-|-|+.|+||||+. +++....+.  ..--+++++..
T Consensus        25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~   68 (333)
T 3io5_A           25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF   68 (333)
T ss_dssp             CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            47889 8899999999999994 444333221  22245666543

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=84.06  E-value=0.51  Score=44.03  Aligned_cols=24  Identities=29%  Similarity=0.358  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      .+.+.|+-|+||||+++.+.....
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l~   70 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEALI   70 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            888999999999999988775443

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=84.05  E-value=0.41  Score=41.86  Aligned_cols=22  Identities=32%  Similarity=0.403  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      .+.|.|+.|+||||+.+.+...
T Consensus        40 ~vll~G~~GtGKT~la~~i~~~   61 (324)
T 1hqc_A           40 HLLLFGPPGLGKTTLAHVIAHE   61 (324)
T ss_dssp             CCEEECCTTCCCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999998653

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=83.99  E-value=0.37  Score=42.61  Aligned_cols=27  Identities=26%  Similarity=0.357  Sum_probs=22.8

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      .|..+-|.|+.|+|||++.+.+.....
T Consensus        45 ~~~~vll~G~pGtGKT~la~~la~~~~   71 (331)
T 2r44_A           45 TGGHILLEGVPGLAKTLSVNTLAKTMD   71 (331)
T ss_dssp             HTCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred             cCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            356778999999999999999987654

>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*

Probab=83.81  E-value=0.51  Score=45.03  Aligned_cols=19  Identities=42%  Similarity=0.698  Sum_probs=17.6

Q ss_pred             CCCEEEEEcCCCCChHHHH
Q psy7219         241 RGECFGLLGLNGAGKTTTF  259 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~  259 (288)
                      +|+...+.|.+|+|||||.
T Consensus       240 ~g~~~lffGlSGtGKTTLs  258 (540)
T 2olr_A          240 KGDVAVFFGLSGTGKTTLS  258 (540)
T ss_dssp             TSCEEEEECSTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCHHHHh
Confidence            6789999999999999987

>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*

Probab=83.67  E-value=0.53  Score=44.91  Aligned_cols=30  Identities=30%  Similarity=0.440  Sum_probs=22.1

Q ss_pred             ceeeeEEEE-eCCCEEEEEcCCCCChHHHHHH
Q psy7219         231 AVNQISFGV-GRGECFGLLGLNGAGKTTTFKM  261 (288)
Q Consensus       231 av~~is~~v-~~Ge~~gllG~NGaGKTT~~~~  261 (288)
                      +.+... .+ ++|+...+.|++|+|||||...
T Consensus       214 ~~H~sa-~~~~~g~~~~ffGlSGtGKTtLs~~  244 (529)
T 1j3b_A          214 PMHASA-NVGKEGDVAVFFGLSGTGKTTLSTD  244 (529)
T ss_dssp             EEECEE-EECTTCCEEEEEECTTSCHHHHTCB
T ss_pred             ecccee-eeCCCCcEEEEEccccCChhhHhhc
Confidence            444333 34 5889999999999999997643

>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1

Probab=83.66  E-value=0.54  Score=44.82  Aligned_cols=21  Identities=38%  Similarity=0.591  Sum_probs=18.7

Q ss_pred             eCCCEEEEEcCCCCChHHHHH
Q psy7219         240 GRGECFGLLGLNGAGKTTTFK  260 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~  260 (288)
                      +.|+...+.|.+|+|||||..
T Consensus       211 ~~g~~~~ffGlSGtGKTTLs~  231 (524)
T 1ii2_A          211 KQGDVTVFFGLSGTGKTTLSA  231 (524)
T ss_dssp             TTCCEEEEECCTTSSHHHHHC
T ss_pred             CCCCEEEEEccCCcchhhhhh
Confidence            578999999999999999863

>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*

Probab=83.56  E-value=0.58  Score=46.92  Aligned_cols=28  Identities=25%  Similarity=0.291  Sum_probs=23.6

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      ++.||+-+.|.+|||||..-|.+...+.
T Consensus       138 ~~nQsIiiSGESGAGKTe~tK~i~~yla  165 (784)
T 2v26_A          138 KLSQSIIVSGESGAGKTENTKFVLRYLT  165 (784)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEcCCCCCCceehHHHHHHHHH
Confidence            4789999999999999999998865443

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=83.41  E-value=0.38  Score=45.32  Aligned_cols=22  Identities=36%  Similarity=0.369  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      .++++|+.++||||+++.|++.
T Consensus        35 ki~iiG~~~~GKSTLi~~Ll~~   56 (483)
T 3p26_A           35 SFVVLGHVDAGKSTLMGRLLYD   56 (483)
T ss_dssp             EEEEESCGGGTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5779999999999999999755

>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*

Probab=83.32  E-value=0.61  Score=46.74  Aligned_cols=26  Identities=27%  Similarity=0.303  Sum_probs=22.7

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      ++.||+-+.|.+|||||..-|.+...
T Consensus       169 ~~nQsIiiSGESGAGKTe~tK~im~y  194 (783)
T 4db1_A          169 RENQSILITGESGAGKTVNTKRVIQY  194 (783)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCCchHHHHHHHh
Confidence            57899999999999999999887543

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A

Probab=83.28  E-value=0.61  Score=46.84  Aligned_cols=27  Identities=30%  Similarity=0.329  Sum_probs=23.2

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      ++.||+-+.|.+|||||..-|.+...+
T Consensus       154 ~~nQsIiisGESGAGKTe~tK~i~~yl  180 (795)
T 1w7j_A          154 ERNQSIIVSGESGAGKTVSAKYAMRYF  180 (795)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEeCCCCCCcchHHHHHHHHH
Confidence            478999999999999999998876444

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=83.26  E-value=0.51  Score=45.78  Aligned_cols=21  Identities=19%  Similarity=0.177  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHhC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTG  264 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G  264 (288)
                      .++++|+.++|||||++.|++
T Consensus       179 ~I~iiG~~d~GKSTLi~~Ll~  199 (592)
T 3mca_A          179 HLVVTGHVDSGKSTMLGRIMF  199 (592)
T ss_dssp             EEEEECCSSSTHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            588999999999999999954

>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...

Probab=83.21  E-value=0.64  Score=46.44  Aligned_cols=26  Identities=27%  Similarity=0.332  Sum_probs=22.5

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      ++.||+-+.|.+|||||..-|.+...
T Consensus       170 ~~nQsIiisGESGAGKTe~tK~i~~y  195 (770)
T 1w9i_A          170 RQNQSLLITGESGAGKTENTKKVIQY  195 (770)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCcEEEEecCCCCcchHHHHHHHHH
Confidence            47899999999999999998877543

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=83.17  E-value=0.51  Score=42.62  Aligned_cols=24  Identities=29%  Similarity=0.284  Sum_probs=19.3

Q ss_pred             CEEEE--EcCCCCChHHHHHHHhCCC
Q psy7219         243 ECFGL--LGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       243 e~~gl--lG~NGaGKTT~~~~l~G~~  266 (288)
                      ..+-|  .|+.|.||||+.+.+....
T Consensus        51 ~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           51 VNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             EEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            34555  7999999999999987654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=83.11  E-value=0.59  Score=43.49  Aligned_cols=22  Identities=23%  Similarity=0.119  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      .++++|+.++|||||++-|.+.
T Consensus        19 ~i~iiG~~d~GKSTL~~~Ll~~   40 (439)
T 3j2k_7           19 NVVFIGHVDAGKSTIGGQIMYL   40 (439)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            6789999999999999999543

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.06  E-value=0.57  Score=43.60  Aligned_cols=30  Identities=30%  Similarity=0.396  Sum_probs=25.0

Q ss_pred             EEeCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      ++++..-+-|-||.|+|||++.+.+++...
T Consensus       202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~  231 (428)
T 4b4t_K          202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTK  231 (428)
T ss_dssp             CCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            455666678999999999999999998654

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=82.92  E-value=0.73  Score=43.69  Aligned_cols=25  Identities=28%  Similarity=0.319  Sum_probs=21.9

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         242 GECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      ...+-|.||.|+||||+.+.++...
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l  101 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQEL  101 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            3577899999999999999998765

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=82.91  E-value=0.46  Score=43.48  Aligned_cols=26  Identities=31%  Similarity=0.197  Sum_probs=20.2

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         242 GECFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      |-.+.+=|+-||||||+.+.|.....
T Consensus        49 ~~fIt~EG~dGsGKTT~~~~Lae~L~   74 (376)
T 1of1_A           49 LLRVYIDGPHGMGKTTTTQLLVALGS   74 (376)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHC---
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            34667889999999999999998765

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=82.72  E-value=0.8  Score=42.61  Aligned_cols=27  Identities=22%  Similarity=0.180  Sum_probs=23.6

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .+...+-|.||.|+||||+.+.++...
T Consensus       165 ~~~~~vLL~GppGtGKT~lA~aia~~~  191 (444)
T 2zan_A          165 TPWRGILLFGPPGTGKSYLAKAVATEA  191 (444)
T ss_dssp             CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            455678899999999999999999876

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=82.53  E-value=0.83  Score=41.50  Aligned_cols=26  Identities=27%  Similarity=0.296  Sum_probs=22.5

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      ++..+-|.|+.|+|||++.+.++...
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~~  172 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAES  172 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhh
Confidence            45678899999999999999998654

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=82.51  E-value=0.86  Score=40.52  Aligned_cols=24  Identities=25%  Similarity=0.520  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      .+-+.|+.|+||||+.+.+.....
T Consensus        40 ~~ll~G~~G~GKT~la~~la~~l~   63 (373)
T 1jr3_A           40 AYLFSGTRGVGKTSIARLLAKGLN   63 (373)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            456899999999999999876543

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.40  E-value=0.63  Score=43.44  Aligned_cols=30  Identities=30%  Similarity=0.356  Sum_probs=25.4

Q ss_pred             EEeCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      ++++..-+-|-||.|+|||++.+.+++...
T Consensus       211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~  240 (437)
T 4b4t_L          211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIG  240 (437)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            466666778999999999999999998754

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=82.39  E-value=0.72  Score=44.30  Aligned_cols=23  Identities=35%  Similarity=0.445  Sum_probs=19.5

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHh
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      +-..+||+||-+||||||...|.
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL   52 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLL   52 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCHHHHHHHHH
Confidence            33478999999999999998873

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=82.32  E-value=0.78  Score=42.99  Aligned_cols=25  Identities=32%  Similarity=0.300  Sum_probs=20.6

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         242 GECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      ....-|.|++|.||||+.+.++...
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHHH
Confidence            3456799999999999999987653

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=82.26  E-value=1.1  Score=43.20  Aligned_cols=41  Identities=15%  Similarity=0.219  Sum_probs=29.9

Q ss_pred             eEEEEeCCCEEEEEcCCCCChHHHHHHHhC----CCCCCCceEEE
Q psy7219         235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTG----AIKPTSGNAYV  275 (288)
Q Consensus       235 is~~v~~Ge~~gllG~NGaGKTT~~~~l~G----~~~pt~G~i~i  275 (288)
                      +.+++.++-...+.|.+|+|||++++.|..    ...|..-++++
T Consensus       207 v~~DL~k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lil  251 (574)
T 2iut_A          207 IITDLAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIM  251 (574)
T ss_dssp             EEEEGGGSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEE
T ss_pred             EEEEhhhCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEE
Confidence            556666788899999999999999987443    34555555443

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=82.24  E-value=1.1  Score=42.60  Aligned_cols=37  Identities=27%  Similarity=0.247  Sum_probs=28.2

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      +++.+...+..|.-+-|.||.|.|||++.+.|.....
T Consensus        30 ~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           30 AIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             HHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             HHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHHh
Confidence            3344444455667888999999999999999988663

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=82.18  E-value=0.86  Score=38.40  Aligned_cols=24  Identities=21%  Similarity=0.129  Sum_probs=19.3

Q ss_pred             eCCCEEEEEcCCCCChHH-HHHHHh
Q psy7219         240 GRGECFGLLGLNGAGKTT-TFKMLT  263 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT-~~~~l~  263 (288)
                      .+|.+.-+.|+-|||||| +++.+-
T Consensus        26 ~~G~I~vitG~M~sGKTT~Llr~~~   50 (219)
T 3e2i_A           26 HSGWIECITGSMFSGKSEELIRRLR   50 (219)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            358888999999999999 666653

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.06  E-value=0.66  Score=43.26  Aligned_cols=31  Identities=19%  Similarity=0.249  Sum_probs=25.7

Q ss_pred             EEEeCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         237 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      +++++..-+-|-||.|+|||++.+.+++...
T Consensus       210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~~  240 (434)
T 4b4t_M          210 MGIRAPKGALMYGPPGTGKTLLARACAAQTN  240 (434)
T ss_dssp             HCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence            3566666677999999999999999998754

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=81.83  E-value=0.76  Score=39.93  Aligned_cols=23  Identities=30%  Similarity=0.348  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .+.+.||.|.||||+.+.+....
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~l   70 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALAREL   70 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHh
Confidence            46789999999999999988653

>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A

Probab=81.58  E-value=0.76  Score=43.87  Aligned_cols=22  Identities=36%  Similarity=0.524  Sum_probs=18.4

Q ss_pred             EEe-CC-CEEEEEcCCCCChHHHH
Q psy7219         238 GVG-RG-ECFGLLGLNGAGKTTTF  259 (288)
Q Consensus       238 ~v~-~G-e~~gllG~NGaGKTT~~  259 (288)
                      +|. .| +...+.|.+|+|||||.
T Consensus       229 nv~~~g~~~~~ffGlSGtGKTTLs  252 (532)
T 1ytm_A          229 NTDLEGKNTAIFFGLSGTGKTTLS  252 (532)
T ss_dssp             EEETTSCSEEEEECCTTSSHHHHH
T ss_pred             eeCCCCCeEEEEEecCCCCHHHHh
Confidence            444 56 89999999999999977

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=81.25  E-value=0.91  Score=39.79  Aligned_cols=34  Identities=21%  Similarity=0.238  Sum_probs=25.6

Q ss_pred             CEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219         243 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       243 e~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~  278 (288)
                      ..+.|.|+-|.||||+++.+......  ..++++..
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~--~~~~~~~~   64 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNL--PYIYLDLR   64 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTC--CEEEEEGG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCC--CEEEEEch
Confidence            48889999999999999988765432  24666544

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1

Probab=80.85  E-value=0.82  Score=47.17  Aligned_cols=25  Identities=28%  Similarity=0.375  Sum_probs=22.0

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTG  264 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G  264 (288)
                      .+.||+-+.|.+|||||..-|.+..
T Consensus       170 ~~~QsIiisGESGAGKTe~~K~i~~  194 (1010)
T 1g8x_A          170 RQNQSLLITGESGAGKTENTKKVIQ  194 (1010)
T ss_dssp             TCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEeCCCCCCcchHHHHHHH
Confidence            4789999999999999999888653

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=80.81  E-value=0.72  Score=46.56  Aligned_cols=25  Identities=28%  Similarity=0.290  Sum_probs=21.8

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTG  264 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G  264 (288)
                      .+.||+-+.|.+|||||..-|.+..
T Consensus       167 ~~nQsIiiSGESGAGKTe~tK~i~~  191 (837)
T 1kk8_A          167 RENQSCLITGESGAGKTENTKKVIM  191 (837)
T ss_dssp             TSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEeCCCCCCchhhHHHHHH
Confidence            4789999999999999999887653

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=80.80  E-value=1.3  Score=42.29  Aligned_cols=35  Identities=14%  Similarity=0.043  Sum_probs=27.2

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhC-----CCCCCCceEEEc
Q psy7219         242 GECFGLLGLNGAGKTTTFKMLTG-----AIKPTSGNAYVM  276 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l~G-----~~~pt~G~i~i~  276 (288)
                      ..+++|.|.-|.||||+.+.+..     ....-+|.++++
T Consensus       152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~  191 (549)
T 2a5y_B          152 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK  191 (549)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE
Confidence            35889999999999999999984     223346777774

>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}

Probab=80.79  E-value=0.83  Score=47.23  Aligned_cols=28  Identities=25%  Similarity=0.291  Sum_probs=24.0

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      .+.||+-+.|.+|||||...|.+...+.
T Consensus       142 ~~nQsIiiSGESGAGKTestK~im~yLa  169 (1052)
T 4anj_A          142 KLSQSIIVSGESGAGKTENTKFVLRYLT  169 (1052)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHHH
Confidence            3678999999999999999998876554

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=80.74  E-value=0.83  Score=43.20  Aligned_cols=28  Identities=25%  Similarity=0.260  Sum_probs=23.6

Q ss_pred             EeCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         239 VGRGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +++...+-|.|++|+|||++.+.+....
T Consensus       235 ~~~~~~vLL~GppGtGKT~lAraia~~~  262 (489)
T 3hu3_A          235 VKPPRGILLYGPPGTGKTLIARAVANET  262 (489)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence            4455668899999999999999998765

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*

Probab=80.67  E-value=0.82  Score=47.09  Aligned_cols=25  Identities=28%  Similarity=0.286  Sum_probs=21.9

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTG  264 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G  264 (288)
                      .+.||+-+.|.+|||||..-|.+..
T Consensus       144 ~~~QsIiisGESGAGKTe~~K~i~~  168 (995)
T 2ycu_A          144 REDQSILCTGESGAGKTENTKKVIQ  168 (995)
T ss_dssp             CCCEEEEEECBTTSSHHHHHHHHHH
T ss_pred             CCCcEEEecCCCCCCchhhHHHHHH
Confidence            4789999999999999999888753

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=80.39  E-value=0.77  Score=42.96  Aligned_cols=23  Identities=13%  Similarity=0.153  Sum_probs=20.1

Q ss_pred             CEEEEEcCCCCChHHHHHHHhCC
Q psy7219         243 ECFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       243 e~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      -+++++|+-++|||||++.|.|.
T Consensus        68 ~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           68 VAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHhhh
Confidence            36889999999999999999753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	288
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	1e-16
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	2e-15
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	1e-13
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	1e-13
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	1e-13
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	2e-13
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	4e-13
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	5e-13
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	1e-12
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	5e-12
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	6e-12
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	1e-11
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	2e-11
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	2e-11
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	3e-11
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	1e-10
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	3e-10
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	3e-09
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	6e-09
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	7e-09
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	1e-05

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 75.4 bits (185), Expect = 1e-16
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 4/76 (5%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           +VVK L K        K  +  ISF +  GE FGL+G NGAGKTTT ++++  IKP+SG 
Sbjct: 3   VVVKDLRKRI----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58

Query: 273 AYVMNHSIRDSMDLVR 288
             V   ++ +    VR
Sbjct: 59  VTVFGKNVVEEPHEVR 74

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 71.9 bits (176), Expect = 2e-15
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS 270
           ++L  + + K +   K    A++ +S  V +G+   ++G NG+GK+T   ++TG +K   
Sbjct: 3   EILRTENIVKYFGEFK----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE 58

Query: 271 GNAYVMNHSIRDSM 284
           G  Y  N  I +  
Sbjct: 59  GRVYFENKDITNKE 72

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 67.0 bits (163), Expect = 1e-13
 Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           ++VK + K++   K    A++ ++  +  GE FG+LG +GAGKTT  +++ G   P++G 
Sbjct: 4   IIVKNVSKVFKKGK--VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61

Query: 273 AYVMNHSI 280
            Y  +  +
Sbjct: 62  LYFDDRLV 69

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 66.4 bits (162), Expect = 1e-13
 Identities = 18/70 (25%), Positives = 36/70 (51%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           + +  + K++     T  A+N +S  V  G+ +G++G +GAGK+T  + +    +PT G+
Sbjct: 2   IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61

Query: 273 AYVMNHSIRD 282
             V    +  
Sbjct: 62  VLVDGQELTT 71

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 66.4 bits (162), Expect = 1e-13
 Identities = 18/70 (25%), Positives = 35/70 (50%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           + +K + K Y   ++   A+  ++  +  GE   ++G +G+GK+T   ++    KPT G 
Sbjct: 2   IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61

Query: 273 AYVMNHSIRD 282
            Y+ N    D
Sbjct: 62  VYIDNIKTND 71

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 65.7 bits (160), Expect = 2e-13
 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           VL V+ L   Y        A+  I   V RG+   L+G NGAGKTTT   + G ++   G
Sbjct: 6   VLEVQSLHVYY----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG 61

Query: 272 NAYVMNHSIRDSMDLVR 288
                   I +    V 
Sbjct: 62  KIIFNGQDITNKPAHVI 78

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 64.6 bits (157), Expect = 4e-13
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           L ++ L   Y      KP + +I+  + +G      G NG GKTT  K ++  +KP  G 
Sbjct: 3   LEIRDLSVGY-----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 57

Query: 273 AYVMNHSIRD 282
                  I  
Sbjct: 58  IIYNGVPITK 67

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 65.2 bits (159), Expect = 5e-13
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           L V  L K Y         +  +S     G+   ++G +G+GK+T  + +    KP+ G 
Sbjct: 3   LHVIDLHKRY----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 58

Query: 273 AYVMNHSIRDSMD 285
             V   +I    D
Sbjct: 59  IIVNGQNINLVRD 71

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274
           ++ L K + N      AVN+++  +  GE   LLG +G GKTTT +M+ G  +PT G  Y
Sbjct: 9   LENLTKRFGN----FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64

Query: 275 VMNH 278
             + 
Sbjct: 65  FGDR 68

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 61.9 bits (150), Expect = 5e-12
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
              +  +S  V  GE   L+G NGAGK+T    + G +    G+       +  
Sbjct: 12  STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEA 64

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 61.6 bits (149), Expect = 6e-12
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           ++ ++ L + + N      +++ +S  V  GE F +LG  GAGKT   +++ G   P SG
Sbjct: 1   MIEIESLSRKWKN-----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG 55

Query: 272 NAYVMNHSIRDSMDLVR 288
              +    + D      
Sbjct: 56  RILLDGKDVTDLSPEKH 72

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 60.7 bits (147), Expect = 1e-11
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
            + +  ++K++        AV ++S  V  GE   LLG +G GKTTT +M+ G  +P+ G
Sbjct: 3   GVRLVDVWKVF----GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRG 58

Query: 272 NAYVMNHSI 280
             Y+ +  +
Sbjct: 59  QIYIGDKLV 67

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 60.3 bits (146), Expect = 2e-11
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
           +L  + +   Y    D++  +  ISF           G +G GK+T F +L    +PT+G
Sbjct: 1   MLSARHVDFAY---DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAG 57

Query: 272 NAYVMNHSIRD 282
              +    I +
Sbjct: 58  EITIDGQPIDN 68

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 60.0 bits (145), Expect = 2e-11
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274
           ++ + K +            I+  +  GE    +G +G GK+T  +M+ G    TSG+ +
Sbjct: 3   LQNVTKAW----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58

Query: 275 VMNHSIRD 282
           +    + D
Sbjct: 59  IGEKRMND 66

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.3 bits (146), Expect = 3e-11
 Identities = 13/75 (17%), Positives = 33/75 (44%), Gaps = 13/75 (17%)

Query: 225 SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG------------- 271
                P +  I+  + +GE   + G  G+GKT+   ++ G ++ + G             
Sbjct: 45  CLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQ 104

Query: 272 NAYVMNHSIRDSMDL 286
            +++M  +I++++  
Sbjct: 105 FSWIMPGTIKENIIF 119

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 57.9 bits (140), Expect = 1e-10
 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           + +  +   Y +++   P +  I+  + +GE    +G++G GK+T   ++      TSG 
Sbjct: 17  IDIDHVSFQYNDNE--APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 74

Query: 273 AYVMNHSIRD 282
             +  H+I+D
Sbjct: 75  ILIDGHNIKD 84

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 56.8 bits (137), Expect = 3e-10
 Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 8/91 (8%)

Query: 194 DDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGA 253
           D+ ++  +R       GD+   + +   Y   +   PA+  I+  +  G+   L+G +G+
Sbjct: 1   DEGKRVIDRAT-----GDL-EFRNVTFTYPGRE--VPALRNINLKIPAGKTVALVGRSGS 52

Query: 254 GKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 284
           GK+T   ++T       G+  +  H +R+  
Sbjct: 53  GKSTIASLITRFYDIDEGHILMDGHDLREYT 83

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (130), Expect = 3e-09
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
           +  + +   Y N  D    +  ++F +  GE   L+G NG+GK+T   +L    +PT G 
Sbjct: 12  VQFQDVSFAYPNRPD-VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 70

Query: 273 AYVMNHSIRD 282
             +    +  
Sbjct: 71  LLLDGKPLPQ 80

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 53.1 bits (127), Expect = 6e-09
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
           + F +G  +   LLG  GAGK+   +++ G +KP  G   +    I
Sbjct: 18  VDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI 62

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 53.0 bits (127), Expect = 7e-09
 Identities = 14/58 (24%), Positives = 30/58 (51%)

Query: 225 SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
             D+   ++ I+  + +GE  G++G +G+GK+T  K++     P +G   +  H +  
Sbjct: 12  KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLAL 69

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 7/40 (17%), Positives = 14/40 (35%)

Query: 246 GLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 285
            + G  G GKTT  K +   +   +   +       ++  
Sbjct: 4   IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKK 43

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	288
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.83
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.82
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.82
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.82
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.81
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.81
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.8
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.8
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.8
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.79
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.79
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.78
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.77
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.75
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.75
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.74
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.71
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.63
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.57
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.55
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.69
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.37
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.19
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.04
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.94
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.86
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.8
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.57
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.52
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.15
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	95.79
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	95.78
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.54
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	95.53
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.49
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	95.21
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	95.2
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.18
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.15
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	95.12
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.91
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	94.88
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.57
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	94.56
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.37
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.24
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	94.18
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.07
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	94.0
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	93.96
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	93.94
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	93.87
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	93.85
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	93.77
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	93.75
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	93.71
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	93.7
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	93.66
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.63
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	93.56
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	93.28
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.26
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.16
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	92.77
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	92.5
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	92.37
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	92.25
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	92.17
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	92.12
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	91.95
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	91.88
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	91.6
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	91.12
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	91.08
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	91.03
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	90.94
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	90.5
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	89.8
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	89.72
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	89.45
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	89.22
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	89.2
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	89.12
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	89.1
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	89.06
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	88.68
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	88.61
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	88.53
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	88.48
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	88.28
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	88.13
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	87.87
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	87.83
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	87.74
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	86.88
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	86.83
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	86.46
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	86.21
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	85.95
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	84.58
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	84.37
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.85
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.81
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	83.73
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	83.6
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	83.55
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	83.52
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	83.19
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	83.15
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	82.93
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	82.74
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	82.52
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	81.82
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	81.63
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	81.5
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	80.95

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.83  E-value=2.6e-21  Score=167.15  Aligned_cols=70  Identities=33%  Similarity=0.502  Sum_probs=65.0

Q ss_pred             CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchh
Q psy7219         211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM  284 (288)
Q Consensus       211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~  284 (288)
                      ..++++||+|.|+    ++.|++|+||+|++||++||+|||||||||++|+|+|+.+|++|+|.++|+++.+..
T Consensus         5 ~~Lev~~l~k~yg----~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~   74 (240)
T d1ji0a_           5 IVLEVQSLHVYYG----AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKP   74 (240)
T ss_dssp             EEEEEEEEEEEET----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC
T ss_pred             eEEEEeeEEEEEC----CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEeccccccccc
Confidence            4789999999995    467999999999999999999999999999999999999999999999999987543

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=3.8e-21  Score=165.85  Aligned_cols=71  Identities=41%  Similarity=0.617  Sum_probs=65.4

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchhhh
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL  286 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~~~  286 (288)
                      .+.++||+|.|+    ++.|++|+||+|++||++||+|||||||||++|+|+|+.+|++|+|.++|+++.+...+
T Consensus         2 aI~v~nl~k~yg----~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~   72 (238)
T d1vpla_           2 AVVVKDLRKRIG----KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHE   72 (238)
T ss_dssp             CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHH
T ss_pred             CEEEEeEEEEEC----CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHH
Confidence            478999999995    46799999999999999999999999999999999999999999999999998765543

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.82  E-value=5.2e-21  Score=164.47  Aligned_cols=68  Identities=32%  Similarity=0.533  Sum_probs=63.8

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccch
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS  283 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~  283 (288)
                      .++++|++|.|+    ++.|++|+||+|++||++||+|||||||||++|+|+|+++|++|+|+++|+++.+.
T Consensus         6 ~I~v~nlsk~yg----~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~   73 (239)
T d1v43a3           6 EVKLENLTKRFG----NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYL   73 (239)
T ss_dssp             CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS
T ss_pred             eEEEEEEEEEEC----CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccC
Confidence            389999999995    47899999999999999999999999999999999999999999999999998653

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.1e-20  Score=161.86  Aligned_cols=66  Identities=23%  Similarity=0.456  Sum_probs=62.3

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ++++|++|.|+    ++.|++|+||+|++||++||+|||||||||++|+|+|+.+|++|+|.++|+++.+
T Consensus         1 Iev~nv~k~yg----~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~   66 (232)
T d2awna2           1 VQLQNVTKAWG----EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMND   66 (232)
T ss_dssp             EEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTT
T ss_pred             CEEEEEEEEEC----CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCC
Confidence            57999999995    4679999999999999999999999999999999999999999999999999864

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.81  E-value=1.3e-20  Score=161.34  Aligned_cols=70  Identities=26%  Similarity=0.494  Sum_probs=64.2

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ++++|++|.|+.+++...|++|+||+|++||++||+|||||||||++++|+|+++|++|+|+++|.++.+
T Consensus         2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~   71 (230)
T d1l2ta_           2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND   71 (230)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTT
T ss_pred             EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCc
Confidence            6899999999764444569999999999999999999999999999999999999999999999999864

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.81  E-value=1.9e-20  Score=161.07  Aligned_cols=68  Identities=32%  Similarity=0.584  Sum_probs=63.5

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccch
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS  283 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~  283 (288)
                      .++++|++|.|+    ++.||+|+||+|++||++||+|||||||||++|+|+|+++|++|+|+++|.++.+.
T Consensus         3 ~i~v~nl~k~yg----~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~   70 (240)
T d1g2912           3 GVRLVDVWKVFG----EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADP   70 (240)
T ss_dssp             EEEEEEEEEEET----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEG
T ss_pred             cEEEEeEEEEEC----CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEeccc
Confidence            478999999995    46799999999999999999999999999999999999999999999999998643

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=2.8e-20  Score=160.06  Aligned_cols=70  Identities=26%  Similarity=0.500  Sum_probs=64.1

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ++++|++|+|+.+++...||+|+||+|++||++||+|||||||||++|+|+|+.+|++|+|.++|+++.+
T Consensus         2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~   71 (240)
T d3dhwc1           2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTT   71 (240)
T ss_dssp             EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECT
T ss_pred             EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeee
Confidence            6899999999764333469999999999999999999999999999999999999999999999999853

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.80  E-value=1.8e-20  Score=161.23  Aligned_cols=70  Identities=29%  Similarity=0.596  Sum_probs=64.6

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccch
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS  283 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~  283 (288)
                      .++++|++|+|++  ++..|++|+||+|++||++||+|||||||||++++|+|+++|++|+|+++|+++...
T Consensus         3 ~i~v~nlsk~y~~--g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~   72 (242)
T d1oxxk2           3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN   72 (242)
T ss_dssp             CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEET
T ss_pred             EEEEEeEEEEECC--CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecC
Confidence            3789999999964  346799999999999999999999999999999999999999999999999998653

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.80  E-value=3.4e-20  Score=161.47  Aligned_cols=67  Identities=28%  Similarity=0.558  Sum_probs=63.4

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .++++|++|.|+    ++.||+|+||+|++||++||+|||||||||++|+|+|+++|++|+|+++|.++..
T Consensus         4 iL~v~nlsk~yg----~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~   70 (254)
T d1g6ha_           4 ILRTENIVKYFG----EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN   70 (254)
T ss_dssp             EEEEEEEEEEET----TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTT
T ss_pred             eEEEEEEEEEEC----CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccc
Confidence            689999999995    4679999999999999999999999999999999999999999999999999864

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.79  E-value=5e-20  Score=154.94  Aligned_cols=68  Identities=28%  Similarity=0.449  Sum_probs=63.0

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchh
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM  284 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~  284 (288)
                      .++++||++.|+     +++++|+||+|++||++||+|||||||||++|+|+|+++|++|+|.++|.++.+..
T Consensus         2 ~lev~~ls~~y~-----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~   69 (200)
T d1sgwa_           2 KLEIRDLSVGYD-----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVK   69 (200)
T ss_dssp             EEEEEEEEEESS-----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGG
T ss_pred             eEEEEEEEEEeC-----CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhc
Confidence            488999999993     36999999999999999999999999999999999999999999999999987543

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.79  E-value=3.7e-20  Score=158.14  Aligned_cols=65  Identities=29%  Similarity=0.519  Sum_probs=61.3

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ++++||+|.|++     .||+|+||+|++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus         2 i~v~nlsk~y~~-----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~   66 (229)
T d3d31a2           2 IEIESLSRKWKN-----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTD   66 (229)
T ss_dssp             EEEEEEEEECSS-----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred             EEEEEEEEEeCC-----EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccc
Confidence            789999999942     49999999999999999999999999999999999999999999999999864

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.78  E-value=1.1e-19  Score=158.26  Aligned_cols=67  Identities=25%  Similarity=0.400  Sum_probs=63.0

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .++++||+|.|+    ++.|++|+||+|++||++||+|+|||||||++|+|+|+++|++|+|.++|.++..
T Consensus         2 ~Lev~nl~k~yg----~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~   68 (258)
T d1b0ua_           2 KLHVIDLHKRYG----GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINL   68 (258)
T ss_dssp             CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCE
T ss_pred             eEEEEEEEEEEC----CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEecc
Confidence            489999999995    4679999999999999999999999999999999999999999999999999853

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.77  E-value=2.8e-19  Score=154.37  Aligned_cols=68  Identities=24%  Similarity=0.436  Sum_probs=63.2

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .++++||++.|++   ++++++|+||+|++||++||+|+|||||||++++|+|+++|++|+|.++|.++.+
T Consensus         1 mle~knvsf~Y~~---~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~   68 (242)
T d1mv5a_           1 MLSARHVDFAYDD---SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDN   68 (242)
T ss_dssp             CEEEEEEEECSSS---SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTT
T ss_pred             CEEEEEEEEECCC---CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEecc
Confidence            3789999999964   3579999999999999999999999999999999999999999999999999864

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=9.3e-19  Score=151.89  Aligned_cols=70  Identities=23%  Similarity=0.404  Sum_probs=64.8

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .++++|+++.|++. +++.+++|+||+|++||++||+|+|||||||++++|+|+++|++|+|+++|.++.+
T Consensus        11 ~I~~~nvsf~Y~~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~   80 (251)
T d1jj7a_          11 LVQFQDVSFAYPNR-PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQ   80 (251)
T ss_dssp             CEEEEEEEECCTTS-TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG
T ss_pred             eEEEEEEEEECCCC-CCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecch
Confidence            59999999999752 34579999999999999999999999999999999999999999999999999864

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=8.2e-19  Score=151.26  Aligned_cols=68  Identities=22%  Similarity=0.463  Sum_probs=63.3

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      ++++|+++.|++  +++++++|+||+|++||++||+|+|||||||++++|+|+++|++|+|.++|.++.+
T Consensus         2 I~~~nvsf~Y~~--~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~   69 (241)
T d2pmka1           2 ITFRNIRFRYKP--DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLAL   69 (241)
T ss_dssp             EEEEEEEEESST--TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT
T ss_pred             eEEEEEEEEeCC--CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecc
Confidence            688999999964  34679999999999999999999999999999999999999999999999999864

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.74  E-value=2.2e-18  Score=149.67  Aligned_cols=69  Identities=23%  Similarity=0.419  Sum_probs=64.4

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .++++|+++.|++  +++++++|+||.|++||++||+|+|||||||++++|+|+++|++|+|+++|.++++
T Consensus        13 ~I~~~nvsf~Y~~--~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~   81 (253)
T d3b60a1          13 DLEFRNVTFTYPG--REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLRE   81 (253)
T ss_dssp             CEEEEEEEECSSS--SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTT
T ss_pred             EEEEEEEEEEeCC--CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccch
Confidence            4999999999975  34679999999999999999999999999999999999999999999999999864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.71  E-value=3.9e-18  Score=148.03  Aligned_cols=69  Identities=23%  Similarity=0.513  Sum_probs=64.6

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .+.++|+++.|++  +.+++++|+||+|++||++||+|+|||||||++++|+|+++|++|+|.++|.++++
T Consensus        16 ~I~~~nvsf~Y~~--~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~   84 (255)
T d2hyda1          16 RIDIDHVSFQYND--NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKD   84 (255)
T ss_dssp             CEEEEEEEECSCS--SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGG
T ss_pred             EEEEEEEEEEeCC--CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEccc
Confidence            4999999999975  34679999999999999999999999999999999999999999999999999864

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=9.5e-17  Score=137.50  Aligned_cols=62  Identities=24%  Similarity=0.374  Sum_probs=55.5

Q ss_pred             eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      .++++|+.+.|        +++++||+|++||++||+|||||||||++++|+|+. |++|+|.++|+++..
T Consensus         3 il~~~dv~~~~--------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~   64 (231)
T d1l7vc_           3 VMQLQDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEA   64 (231)
T ss_dssp             EEEEEEECCTT--------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGG
T ss_pred             EEEEECcccCc--------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCc
Confidence            46788886543        799999999999999999999999999999999975 689999999999854

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.57  E-value=1.5e-15  Score=129.87  Aligned_cols=62  Identities=31%  Similarity=0.497  Sum_probs=53.1

Q ss_pred             EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219         213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD  282 (288)
Q Consensus       213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~  282 (288)
                      +.+ +..|.|++    .. + |+||++. +|++||+|||||||||++|+|+|+.+|++|+|+++|.++.+
T Consensus         3 l~v-~~~k~~g~----~~-~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~   64 (240)
T d2onka1           3 LKV-RAEKRLGN----FR-L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP   64 (240)
T ss_dssp             EEE-EEEEEETT----EE-E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred             EEE-EEEEEECC----EE-E-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCc
Confidence            445 56788843    32 3 7999995 69999999999999999999999999999999999999864

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=1.2e-15  Score=134.04  Aligned_cols=51  Identities=22%  Similarity=0.507  Sum_probs=49.0

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH  278 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~  278 (288)
                      ++++++|+||+|++||++||+|||||||||++++|+|+++|++|+|.++|+
T Consensus        48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~   98 (281)
T d1r0wa_          48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR   98 (281)
T ss_dssp             TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSC
T ss_pred             CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCE
Confidence            467999999999999999999999999999999999999999999999984

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.19  E-value=0.00012  Score=60.58  Aligned_cols=34  Identities=21%  Similarity=0.424  Sum_probs=26.9

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEE
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY  274 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~  274 (288)
                      +|++..++|++|+||||+++.|.|....-.|++.
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs  127 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS  127 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence            6889999999999999999999998777777664

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=1e-05  Score=64.20  Aligned_cols=32  Identities=31%  Similarity=0.353  Sum_probs=26.5

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      .+++.++...+| +..|+|+|||||||++..|.
T Consensus        14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred             CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence            456677777665 88899999999999999886

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.86  E-value=0.00011  Score=61.12  Aligned_cols=34  Identities=12%  Similarity=0.255  Sum_probs=22.9

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEE
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY  274 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~  274 (288)
                      +|.+..++|++|+||||+++.|.|...-..|.|.
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs  129 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS  129 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence            6888999999999999999999998877777665

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.80  E-value=0.00034  Score=59.61  Aligned_cols=20  Identities=25%  Similarity=0.561  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q psy7219         244 CFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~  263 (288)
                      ...|+|+|||||||+++.|.
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            88999999999999998884

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.57  E-value=0.0005  Score=54.72  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++|+|+.||||||+++.|+|..
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCCCHHHHHHHhcCCC
Confidence            48999999999999999999964

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.52  E-value=0.00079  Score=59.44  Aligned_cols=27  Identities=26%  Similarity=0.628  Sum_probs=22.2

Q ss_pred             EEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219         237 FGVGRGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      +...++....|+|+|||||||++..|+
T Consensus        20 i~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          20 VGFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            334556689999999999999999884

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.15  E-value=0.0013  Score=51.66  Aligned_cols=24  Identities=33%  Similarity=0.564  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      ++||-|+.||||||+.+.|.-...
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            689999999999999999975433

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=95.79  E-value=0.0018  Score=50.23  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++|+|+.++||||+++.|+|..
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48899999999999999999864

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0012  Score=51.82  Aligned_cols=24  Identities=50%  Similarity=0.558  Sum_probs=21.4

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhC
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTG  264 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G  264 (288)
                      +|-++-|.|+.||||||+.+.|.-
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            566888999999999999999974

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.54  E-value=0.003  Score=54.79  Aligned_cols=40  Identities=25%  Similarity=0.252  Sum_probs=32.0

Q ss_pred             EEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219         236 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV  275 (288)
Q Consensus       236 s~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i  275 (288)
                      ...++.|..+.+.|+.||||||+++.|.+..+|..=-+.+
T Consensus       160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti  199 (323)
T d1g6oa_         160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI  199 (323)
T ss_dssp             HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred             HHHHHhCCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence            3345566678999999999999999999999886654555

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.0057  Score=50.46  Aligned_cols=33  Identities=18%  Similarity=0.226  Sum_probs=24.7

Q ss_pred             cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219         230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      .+=+|++++ +.+...-|.|||.+||||.+|.+.
T Consensus        30 ~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          30 FIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             CCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHH
T ss_pred             ccceeEEEC-CCceEEEEeccCchhhHHHHHHHH
Confidence            355566554 234577889999999999999875

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0041  Score=48.81  Aligned_cols=27  Identities=26%  Similarity=0.356  Sum_probs=24.4

Q ss_pred             EEeCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTFKMLTG  264 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G  264 (288)
                      ++++|++.-|.|++|+||||+...++.
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            689999999999999999999877764

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.21  E-value=0.0063  Score=49.84  Aligned_cols=28  Identities=29%  Similarity=0.350  Sum_probs=22.1

Q ss_pred             eeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219         233 NQISFGVGRGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       233 ~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      +|+.+  . ++..-|.|||.+||||.+|.+.
T Consensus        29 Ndi~~--~-~~~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          29 NDLEM--A-HELVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEEE--S-SCEEEEESCSSSSHHHHHHHHH
T ss_pred             ceEEe--C-CcEEEEECCCccccchhhhhhH
Confidence            45554  3 4688899999999999999765

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.20  E-value=0.0065  Score=50.64  Aligned_cols=23  Identities=26%  Similarity=0.486  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .+.|+|.+|+||||+++.|.|..
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            37799999999999999999965

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.18  E-value=0.0062  Score=47.57  Aligned_cols=25  Identities=28%  Similarity=0.274  Sum_probs=21.4

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTG  264 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G  264 (288)
                      ++-+.+-+.|+.||||||+.+-+.-
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567889999999999999988753

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.15  E-value=0.0031  Score=52.66  Aligned_cols=37  Identities=22%  Similarity=0.268  Sum_probs=32.3

Q ss_pred             cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219         228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG  264 (288)
Q Consensus       228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G  264 (288)
                      +.+.+|++.-++.+||.+.|.|++|+||||+...++-
T Consensus        21 G~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             SCTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CchhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            4678898888899999999999999999999776653

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.12  E-value=0.0036  Score=51.63  Aligned_cols=34  Identities=24%  Similarity=0.241  Sum_probs=26.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS  279 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~  279 (288)
                      .+-|.||.|+||||+.+.|++....  +-+.+++-+
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~d~   67 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDNDT   67 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHHTTT--CCEEECTHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhc--ceEEEecHH
Confidence            4668999999999999999998753  455666533

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=94.91  E-value=0.0071  Score=46.47  Aligned_cols=23  Identities=30%  Similarity=0.336  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .+.++|..|+||||+++-|.|..
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~~   39 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMNE   39 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46799999999999999999873

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=94.88  E-value=0.0063  Score=52.71  Aligned_cols=22  Identities=32%  Similarity=0.440  Sum_probs=19.9

Q ss_pred             CEEEEEcCCCCChHHHHHHHhC
Q psy7219         243 ECFGLLGLNGAGKTTTFKMLTG  264 (288)
Q Consensus       243 e~~gllG~NGaGKTT~~~~l~G  264 (288)
                      -++||.|+.||||||++.-|+.
T Consensus        55 ~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          55 LRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEeeCCCCCCHHHHHHHHHH
Confidence            3889999999999999999873

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.57  E-value=0.0096  Score=50.56  Aligned_cols=30  Identities=27%  Similarity=0.323  Sum_probs=26.6

Q ss_pred             EEEeCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         237 FGVGRGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +-|.+||..+|.|+.|+||||++.+++.-.
T Consensus        38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             ccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            567899999999999999999999998633

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.56  E-value=0.011  Score=52.61  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|..|+||||+++.|.|..
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999954

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=94.37  E-value=0.011  Score=45.38  Aligned_cols=24  Identities=46%  Similarity=0.484  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      .+.++|+.|+||||+++.+.+...
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~~~~   41 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLASEDI   41 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            467999999999999999987543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.24  E-value=0.013  Score=46.96  Aligned_cols=26  Identities=31%  Similarity=0.409  Sum_probs=23.7

Q ss_pred             EEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      ++++|+++-|.|+.|+||||+.--++
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred             CCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence            59999999999999999999987665

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=94.18  E-value=0.013  Score=47.24  Aligned_cols=45  Identities=24%  Similarity=0.223  Sum_probs=31.6

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhCCCCC--CCceEEEccccccchh
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSIRDSM  284 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~~p--t~G~i~i~g~~i~~~~  284 (288)
                      ++|-++=+.|.+||||||+.+.|.-.+..  ..-.+.++|-++++..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~l   68 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGL   68 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHhh
Confidence            36678889999999999999998743321  1234667777665543

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.07  E-value=0.015  Score=46.36  Aligned_cols=33  Identities=27%  Similarity=0.285  Sum_probs=26.8

Q ss_pred             ccceeeeEE-EEeCCCEEEEEcCCCCChHHHHHH
Q psy7219         229 KPAVNQISF-GVGRGECFGLLGLNGAGKTTTFKM  261 (288)
Q Consensus       229 ~~av~~is~-~v~~Ge~~gllG~NGaGKTT~~~~  261 (288)
                      -+.+|++-- ++++|+.+-|.|++|+||||+..-
T Consensus        12 i~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~   45 (242)
T d1tf7a1          12 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQ   45 (242)
T ss_dssp             CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHH
T ss_pred             cHHHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHH
Confidence            345666554 699999999999999999999743

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=94.00  E-value=0.011  Score=45.90  Aligned_cols=24  Identities=42%  Similarity=0.432  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      .+.++|..|+||||+++.+.+...
T Consensus        19 KI~lvG~~~vGKTsLi~~l~~~~~   42 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQIGEV   42 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTCCSEE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            466999999999999999986543

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.96  E-value=0.011  Score=47.89  Aligned_cols=25  Identities=28%  Similarity=0.381  Sum_probs=22.3

Q ss_pred             EEeCCCEEEEEcCCCCChHHHHHHH
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTFKML  262 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~~~l  262 (288)
                      ++++|+.+-|.|+.|+||||+.--+
T Consensus        32 Glp~G~~~li~G~pGsGKT~~~lq~   56 (254)
T d1pzna2          32 GIETQAITEVFGEFGSGKTQLAHTL   56 (254)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHH
T ss_pred             CccCCEEEEEEcCCCCCHHHHHHHH
Confidence            5999999999999999999987544

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=93.94  E-value=0.014  Score=50.04  Aligned_cols=36  Identities=17%  Similarity=0.149  Sum_probs=26.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEcccc
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHS  279 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~  279 (288)
                      ++||-|+.||||||+.+.|.....     +.--.+..+|+-
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~  122 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL  122 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeE
Confidence            789999999999999998876653     222334456653

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=93.87  E-value=0.017  Score=44.56  Aligned_cols=26  Identities=31%  Similarity=0.201  Sum_probs=23.0

Q ss_pred             EeCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219         239 VGRGECFGLLGLNGAGKTTTFKMLTG  264 (288)
Q Consensus       239 v~~Ge~~gllG~NGaGKTT~~~~l~G  264 (288)
                      .++|.++.|-|+=||||||+.|-+..
T Consensus        30 ~~~g~ii~L~G~LGaGKTtfvr~~~~   55 (158)
T d1htwa_          30 TEKAIMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEecCCCccHHHHHHHHHh
Confidence            35899999999999999999988873

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.85  E-value=0.016  Score=46.81  Aligned_cols=22  Identities=32%  Similarity=0.383  Sum_probs=19.4

Q ss_pred             EEEEcCCCCChHHHHHHHhCCC
Q psy7219         245 FGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       245 ~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +-|.||+|+||||+.++++...
T Consensus        48 lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          48 LLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHH
Confidence            5689999999999999998654

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.028  Score=47.30  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +++++|+-++||||+++.|.|..
T Consensus        34 vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          34 VVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            78899999999999999999865

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.75  E-value=0.019  Score=46.45  Aligned_cols=35  Identities=17%  Similarity=0.213  Sum_probs=27.9

Q ss_pred             ceeeeEE-EEeCCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219         231 AVNQISF-GVGRGECFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       231 av~~is~-~v~~Ge~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      .+|++-- ++++|+.+-|.|++|+||||+..-++-.
T Consensus        14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            4555544 4899999999999999999998666544

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.71  E-value=0.019  Score=46.78  Aligned_cols=24  Identities=29%  Similarity=0.383  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      .+-|-||+|+||||+.+.++....
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH
Confidence            466899999999999999998764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=93.70  E-value=0.012  Score=45.40  Aligned_cols=26  Identities=38%  Similarity=0.369  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIKPT  269 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~pt  269 (288)
                      .+.++|..|+||||+++.+++...++
T Consensus        14 kIvlvG~~~vGKTSli~rl~~~~~~~   39 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKLGQSVT   39 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTCCCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            35699999999999999998766554

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.66  E-value=0.017  Score=49.85  Aligned_cols=23  Identities=35%  Similarity=0.533  Sum_probs=20.1

Q ss_pred             CEEEEEcCCCCChHHHHHHHhCC
Q psy7219         243 ECFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       243 e~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      -.+||.|+.||||||++.-|...
T Consensus        52 ~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          52 IRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEeeeCCCCCCHHHHHHHHHHH
Confidence            37899999999999999988753

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.63  E-value=0.018  Score=46.12  Aligned_cols=26  Identities=23%  Similarity=0.357  Sum_probs=23.6

Q ss_pred             EEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      ++++|+++-|.|+.|+||||+..-++
T Consensus        30 Gl~~G~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          30 GLESQSVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             CccCCeEEEEEeCCCCCHHHHHHHHH
Confidence            49999999999999999999987665

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.56  E-value=0.017  Score=49.31  Aligned_cols=38  Identities=18%  Similarity=0.171  Sum_probs=27.3

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  280 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i  280 (288)
                      |+..+.++||.|+|||.+.|.|+....  .--+.+++.++
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~--~~~~~i~~s~~   85 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLAN--APFIKVEATKF   85 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHT--CCEEEEEGGGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccc--cchhccccccc
Confidence            345667999999999999999998643  22445554443

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.02  Score=46.18  Aligned_cols=26  Identities=23%  Similarity=0.180  Sum_probs=23.8

Q ss_pred             EEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      ++++|+++-|.|++|+||||+...++
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999999987665

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.26  E-value=0.017  Score=51.29  Aligned_cols=33  Identities=21%  Similarity=0.223  Sum_probs=25.6

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceE
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA  273 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i  273 (288)
                      ++-.+-+.||+|+|||||+..+.........+|
T Consensus       157 ~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i  189 (401)
T d1p9ra_         157 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNI  189 (401)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCE
T ss_pred             hhceEEEEcCCCCCccHHHHHHhhhhcCCCceE
Confidence            455688999999999999998887665444443

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.16  E-value=0.044  Score=42.94  Aligned_cols=32  Identities=25%  Similarity=0.256  Sum_probs=25.6

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      .++...+.+ .|.-+.+.|++|+||||+.-.|.
T Consensus         5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2           5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            466666666 78889999999999999886544

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=92.77  E-value=0.032  Score=45.32  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=20.6

Q ss_pred             CCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         242 GECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       242 Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +.++.|.|+.|+||||+++.+.-..
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            4578899999999999999876443

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=92.50  E-value=0.032  Score=45.25  Aligned_cols=29  Identities=34%  Similarity=0.363  Sum_probs=23.3

Q ss_pred             CEEEEEcCCCCChHHHHHHHhCCCCCCCc
Q psy7219         243 ECFGLLGLNGAGKTTTFKMLTGAIKPTSG  271 (288)
Q Consensus       243 e~~gllG~NGaGKTT~~~~l~G~~~pt~G  271 (288)
                      .++-|.||.|.||||+.+.++...+...+
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~~~~~   72 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYKDKTT   72 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence            36779999999999999999876654444

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=92.37  E-value=0.027  Score=45.51  Aligned_cols=34  Identities=21%  Similarity=0.254  Sum_probs=25.8

Q ss_pred             EEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219         245 FGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  280 (288)
Q Consensus       245 ~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i  280 (288)
                      .-+-||.|+||||+.+.++.......+  .++|.+.
T Consensus        38 ~L~~GPpGtGKT~lA~~la~~~~~~~~--~~~~~~~   71 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIASELQTNIH--VTSGPVL   71 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHTCCEE--EEETTTC
T ss_pred             EEEECCCCCcHHHHHHHHHhccCCCcc--cccCccc
Confidence            458999999999999999987765533  4455544

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.25  E-value=0.034  Score=44.61  Aligned_cols=21  Identities=38%  Similarity=0.472  Sum_probs=18.6

Q ss_pred             EEEEcCCCCChHHHHHHHhCC
Q psy7219         245 FGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       245 ~gllG~NGaGKTT~~~~l~G~  265 (288)
                      .-|-||+|+||||+.+.++..
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            458899999999999999865

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.17  E-value=0.049  Score=45.72  Aligned_cols=30  Identities=30%  Similarity=0.407  Sum_probs=25.9

Q ss_pred             eEEEEeCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219         235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTG  264 (288)
Q Consensus       235 is~~v~~Ge~~gllG~NGaGKTT~~~~l~G  264 (288)
                      .=+.+.+||..+|.|..|+||||++.++.-
T Consensus        61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          61 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             HHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             eeccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence            336788999999999999999999877753

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=92.12  E-value=0.045  Score=45.37  Aligned_cols=41  Identities=22%  Similarity=0.191  Sum_probs=27.5

Q ss_pred             EEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI  280 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i  280 (288)
                      ++++...+-|.||.|+|||++.+.|+.....  =-+.++..++
T Consensus        41 g~~~~~~iLL~GppGtGKT~la~~iA~~~~~--~~~~i~~~~l   81 (256)
T d1lv7a_          41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV--PFFTISGSDF   81 (256)
T ss_dssp             --CCCCEEEEECCTTSCHHHHHHHHHHHHTC--CEEEECSCSS
T ss_pred             CCCCCCeEEeeCCCCCCccHHHHHHHHHcCC--CEEEEEhHHh
Confidence            3334455678999999999999999976542  2344555443

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.95  E-value=0.041  Score=46.45  Aligned_cols=20  Identities=25%  Similarity=0.238  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCChHHHHHHHh
Q psy7219         244 CFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~  263 (288)
                      ++||-|+.||||||+.+.|.
T Consensus        29 iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHH
Confidence            78999999999999998764

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.88  E-value=0.033  Score=44.61  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=18.5

Q ss_pred             EEEEcCCCCChHHHHHHHhCCC
Q psy7219         245 FGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       245 ~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +-|-||.|+||||+.++++...
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHH
Confidence            4578999999999999887543

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=91.60  E-value=0.086  Score=41.12  Aligned_cols=32  Identities=22%  Similarity=0.271  Sum_probs=23.0

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      .++...+.+ .|.-+.+.|++|+||||+.-.|.
T Consensus         4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_           4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence            344444444 57778899999999999876543

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=91.12  E-value=0.043  Score=44.27  Aligned_cols=33  Identities=21%  Similarity=0.229  Sum_probs=23.8

Q ss_pred             EEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219         245 FGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS  279 (288)
Q Consensus       245 ~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~  279 (288)
                      +-+-||.|.||||+.+.+++...-.  ....++.+
T Consensus        38 ~Ll~GPpG~GKTtla~~la~~~~~~--~~~~~~~~   70 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAHELGVN--LRVTSGPA   70 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCC--EEEEETTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCC--eEeccCCc
Confidence            3489999999999999999865432  23444444

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.08  E-value=0.047  Score=44.11  Aligned_cols=21  Identities=38%  Similarity=0.464  Sum_probs=18.3

Q ss_pred             EEEEcCCCCChHHHHHHHhCC
Q psy7219         245 FGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       245 ~gllG~NGaGKTT~~~~l~G~  265 (288)
                      .-|.||.|+||||+.+.++-.
T Consensus        36 lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            458999999999999998754

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=91.03  E-value=0.075  Score=44.63  Aligned_cols=27  Identities=19%  Similarity=0.358  Sum_probs=22.9

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCC-CCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIK-PTS  270 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~-pt~  270 (288)
                      .++++|.-.|||||+++.|+|..- |++
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~~lP~~   53 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRDFLPRG   53 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSCCCCC-
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCCCCCCC
Confidence            478999999999999999999874 553

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.94  E-value=0.046  Score=43.64  Aligned_cols=21  Identities=33%  Similarity=0.457  Sum_probs=18.5

Q ss_pred             EEEEcCCCCChHHHHHHHhCC
Q psy7219         245 FGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       245 ~gllG~NGaGKTT~~~~l~G~  265 (288)
                      +-|-||.|.||||+.++++..
T Consensus        38 lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHH
Confidence            458999999999999999865

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.50  E-value=0.041  Score=44.88  Aligned_cols=22  Identities=36%  Similarity=0.554  Sum_probs=18.2

Q ss_pred             EEEEcCCCCChHHHHHHHhCCC
Q psy7219         245 FGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       245 ~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +.+.||.|.||||+.+.+....
T Consensus        49 l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHHH
Confidence            4456999999999999988653

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.80  E-value=0.049  Score=45.26  Aligned_cols=27  Identities=22%  Similarity=0.261  Sum_probs=22.4

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      +.--+-|-||.|+|||++.+.+++...
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHHhC
Confidence            334466899999999999999998764

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.72  E-value=0.11  Score=43.35  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .++++|.-.|||||+++.|+|..
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCC
Confidence            37799999999999999999976

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=89.45  E-value=0.085  Score=44.18  Aligned_cols=41  Identities=22%  Similarity=0.160  Sum_probs=30.1

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCce
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN  272 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~  272 (288)
                      ++| .=+.+.+||+.+|.|+.|+|||+++..+.--...+...
T Consensus        57 ~ID-~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v   97 (276)
T d1fx0a3          57 AID-AMIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVI   97 (276)
T ss_dssp             TTT-TTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCE
T ss_pred             EEe-ccccccCCceEeeccCCCCChHHHHHHHHhhhcccCce
Confidence            443 33678899999999999999999987654444444433

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=89.22  E-value=0.094  Score=49.53  Aligned_cols=27  Identities=30%  Similarity=0.452  Sum_probs=23.1

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      ++.||+-+.|.+|||||+..|++...+
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            367899999999999999999886543

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=89.20  E-value=0.11  Score=42.48  Aligned_cols=24  Identities=29%  Similarity=0.290  Sum_probs=20.6

Q ss_pred             EeCCCEEEEEcCCCCChHHHHHHH
Q psy7219         239 VGRGECFGLLGLNGAGKTTTFKML  262 (288)
Q Consensus       239 v~~Ge~~gllG~NGaGKTT~~~~l  262 (288)
                      +.||+..-|.|+.|+||||+.--|
T Consensus        26 ~~pg~~~~i~G~~G~GKS~l~l~l   49 (274)
T d1nlfa_          26 MVAGTVGALVSPGGAGKSMLALQL   49 (274)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHH
T ss_pred             ccCCcEEEEEeCCCCCHHHHHHHH
Confidence            457999999999999999998544

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=89.12  E-value=0.1  Score=44.38  Aligned_cols=23  Identities=35%  Similarity=0.463  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .+.++||+|.|||.+.+.|+-..
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHhhc
Confidence            57899999999999999998654

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=89.10  E-value=0.081  Score=46.07  Aligned_cols=30  Identities=20%  Similarity=0.155  Sum_probs=26.8

Q ss_pred             EEeCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      +++++.|+.+.||.|+||||+.+.|++...
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            557888999999999999999999998764

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=89.06  E-value=0.12  Score=42.83  Aligned_cols=42  Identities=21%  Similarity=0.294  Sum_probs=31.4

Q ss_pred             EEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc-eEEEcccc
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAYVMNHS  279 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G-~i~i~g~~  279 (288)
                      ++++|.++-+-|++|+||||+.-.++....-..| -+|++...
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~   92 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH   92 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence            7899999999999999999998666544433334 46666543

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.68  E-value=0.11  Score=42.78  Aligned_cols=23  Identities=26%  Similarity=0.326  Sum_probs=20.2

Q ss_pred             EEEEcCCCCChHHHHHHHhCCCC
Q psy7219         245 FGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       245 ~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      +-|-||.|+|||++.+.++....
T Consensus        41 iLL~GppGtGKT~l~~ala~~~~   63 (258)
T d1e32a2          41 ILLYGPPGTGKTLIARAVANETG   63 (258)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEecCCCCCchHHHHHHHHHhC
Confidence            56889999999999999998653

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=88.61  E-value=0.11  Score=42.53  Aligned_cols=22  Identities=23%  Similarity=0.128  Sum_probs=19.3

Q ss_pred             EEEEcCCCCChHHHHHHHhCCC
Q psy7219         245 FGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       245 ~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +-|.||.|+|||++.+.++...
T Consensus        43 vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          43 VLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHhhcc
Confidence            4588999999999999999764

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=88.53  E-value=0.054  Score=39.10  Aligned_cols=21  Identities=38%  Similarity=0.349  Sum_probs=17.7

Q ss_pred             EeCCCEEEEEcCCCCChHHHH
Q psy7219         239 VGRGECFGLLGLNGAGKTTTF  259 (288)
Q Consensus       239 v~~Ge~~gllG~NGaGKTT~~  259 (288)
                      +++|+..-|.+|.|||||+..
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            367999989999999999554

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=88.48  E-value=0.2  Score=38.65  Aligned_cols=31  Identities=26%  Similarity=0.285  Sum_probs=22.2

Q ss_pred             ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHH
Q psy7219         231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKML  262 (288)
Q Consensus       231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l  262 (288)
                      .++.....+ .|.-+.+.|++|+||||+.-.|
T Consensus         5 ~~H~~~v~~-~g~gvli~G~sg~GKS~la~~l   35 (169)
T d1ko7a2           5 SLHGVLVDV-YGVGVLITGDSGIGKSETALEL   35 (169)
T ss_dssp             EEESEEEEE-TTEEEEEEESTTSSHHHHHHHH
T ss_pred             eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHH
Confidence            344444433 5888899999999999887443

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=88.28  E-value=0.11  Score=49.17  Aligned_cols=26  Identities=27%  Similarity=0.295  Sum_probs=22.5

Q ss_pred             CCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         241 RGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +.||+-+.|.+|||||+..|++...+
T Consensus        90 ~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          90 EDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56899999999999999999886543

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=88.13  E-value=0.12  Score=49.06  Aligned_cols=27  Identities=26%  Similarity=0.354  Sum_probs=23.6

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      ++.||+-+.|.+|||||...|++...+
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            468999999999999999999986544

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=87.87  E-value=0.12  Score=45.19  Aligned_cols=20  Identities=25%  Similarity=0.423  Sum_probs=16.7

Q ss_pred             CEEEEEcCCCCChHHHHHHH
Q psy7219         243 ECFGLLGLNGAGKTTTFKML  262 (288)
Q Consensus       243 e~~gllG~NGaGKTT~~~~l  262 (288)
                      ..+.++|++|+|||++++.+
T Consensus        51 ~H~~I~G~tGsGKT~~l~~l   70 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLREL   70 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHH
Confidence            35789999999999998644

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.83  E-value=0.077  Score=44.26  Aligned_cols=42  Identities=24%  Similarity=0.400  Sum_probs=32.4

Q ss_pred             EEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCce-EEEcccc
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-AYVMNHS  279 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~-i~i~g~~  279 (288)
                      ++++|.+.-+-|++|+||||+.-.++.......|. +||+...
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~   98 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH   98 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence            89999999999999999999976666544444554 5666554

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=87.74  E-value=0.085  Score=43.97  Aligned_cols=41  Identities=24%  Similarity=0.405  Sum_probs=32.6

Q ss_pred             EEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc-eEEEccc
Q psy7219         238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAYVMNH  278 (288)
Q Consensus       238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G-~i~i~g~  278 (288)
                      +++.|.++-+-|+.|+||||+.-.++...+-..| -+|++..
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE   94 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE   94 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence            7899999999999999999998777766554444 4566654

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=86.88  E-value=0.15  Score=48.87  Aligned_cols=27  Identities=26%  Similarity=0.304  Sum_probs=23.1

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      ++.|++-+.|.+|||||+..|++...+
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999877544

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=86.83  E-value=0.17  Score=41.41  Aligned_cols=23  Identities=30%  Similarity=0.478  Sum_probs=20.4

Q ss_pred             EEEEcCCCCChHHHHHHHhCCCC
Q psy7219         245 FGLLGLNGAGKTTTFKMLTGAIK  267 (288)
Q Consensus       245 ~gllG~NGaGKTT~~~~l~G~~~  267 (288)
                      +-|.||.|+|||++.+.++....
T Consensus        45 iLl~GppGtGKT~la~aia~~~~   67 (247)
T d1ixza_          45 VLLVGPPGVGKTHLARAVAGEAR   67 (247)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEecCCCCChhHHHHHHHHHcC
Confidence            46899999999999999998764

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=86.46  E-value=0.083  Score=44.95  Aligned_cols=24  Identities=25%  Similarity=0.441  Sum_probs=20.6

Q ss_pred             EEEEcCCCCChHHHHHHHhCCCCC
Q psy7219         245 FGLLGLNGAGKTTTFKMLTGAIKP  268 (288)
Q Consensus       245 ~gllG~NGaGKTT~~~~l~G~~~p  268 (288)
                      +-|.|+.|.||||+.|.+.+..+|
T Consensus        31 vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          31 VLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             EEEECCCCccHHHHHHHHHHhCCC
Confidence            458899999999999999877643

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=86.21  E-value=0.16  Score=41.52  Aligned_cols=22  Identities=32%  Similarity=0.392  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChHHHHHHH---hCCC
Q psy7219         245 FGLLGLNGAGKTTTFKML---TGAI  266 (288)
Q Consensus       245 ~gllG~NGaGKTT~~~~l---~G~~  266 (288)
                      ++++|+-++|||||...|   +|..
T Consensus        27 i~iiGHVD~GKSTL~~~Ll~~~g~i   51 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNILFLTGMV   51 (245)
T ss_dssp             EEEEECGGGTHHHHHHHHHHHTTSS
T ss_pred             EEEEeeCCCCHHHHHHHHHHHcCCc
Confidence            689999999999999988   5544

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.95  E-value=0.16  Score=42.67  Aligned_cols=29  Identities=24%  Similarity=0.235  Sum_probs=24.6

Q ss_pred             eeEEEEeCCCEEEEEcCCCCChHHHHHHH
Q psy7219         234 QISFGVGRGECFGLLGLNGAGKTTTFKML  262 (288)
Q Consensus       234 ~is~~v~~Ge~~gllG~NGaGKTT~~~~l  262 (288)
                      |.-+.+.+||+.+|.|+.|+|||+++..+
T Consensus        60 D~l~pig~GQr~~If~~~g~GKt~ll~~~   88 (285)
T d2jdia3          60 DSLVPIGRGQRELIIGDRQTGKTSIAIDT   88 (285)
T ss_dssp             HHHSCCBTTCBCEEEESTTSSHHHHHHHH
T ss_pred             ecccCccCCCEEEeecCCCCChHHHHHHH
Confidence            34468889999999999999999997644

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=84.58  E-value=0.2  Score=48.01  Aligned_cols=27  Identities=26%  Similarity=0.276  Sum_probs=22.3

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      ++.||+-+-|.+|||||...|++...+
T Consensus       119 ~~nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         119 RENQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             TSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            357899999999999999977776543

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=84.37  E-value=0.18  Score=45.04  Aligned_cols=23  Identities=26%  Similarity=0.345  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .+-++||+|+|||-+.|.|++..
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            45699999999999999999865

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=83.85  E-value=0.26  Score=41.89  Aligned_cols=20  Identities=40%  Similarity=0.607  Sum_probs=17.7

Q ss_pred             eCCCEEEEEcCCCCChHHHH
Q psy7219         240 GRGECFGLLGLNGAGKTTTF  259 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~  259 (288)
                      +.|++..+.|.+|.|||||-
T Consensus        12 ~~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          12 KEGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TTCCEEEEEECTTSCHHHHT
T ss_pred             CCCCEEEEEccCCCCccccc
Confidence            36788889999999999996

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=83.81  E-value=0.25  Score=41.79  Aligned_cols=20  Identities=40%  Similarity=0.650  Sum_probs=17.9

Q ss_pred             eCCCEEEEEcCCCCChHHHH
Q psy7219         240 GRGECFGLLGLNGAGKTTTF  259 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~  259 (288)
                      ++|+...+.|-+|.|||||-
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            46888889999999999997

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=83.73  E-value=0.23  Score=41.32  Aligned_cols=16  Identities=25%  Similarity=0.370  Sum_probs=13.7

Q ss_pred             EEEEEcCCCCChHHHH
Q psy7219         244 CFGLLGLNGAGKTTTF  259 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~  259 (288)
                      .+-+.|+-|+||||++
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            3568899999999987

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=83.60  E-value=0.24  Score=40.74  Aligned_cols=16  Identities=31%  Similarity=0.295  Sum_probs=13.7

Q ss_pred             EEEEEcCCCCChHHHH
Q psy7219         244 CFGLLGLNGAGKTTTF  259 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~  259 (288)
                      -+-|.|+-|+||||++
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            3568899999999986

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=83.55  E-value=0.26  Score=41.80  Aligned_cols=23  Identities=39%  Similarity=0.579  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      .+-++||+|+|||.+.+.|+-..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHHh
Confidence            56788999999999999888643

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=83.52  E-value=0.23  Score=36.01  Aligned_cols=22  Identities=23%  Similarity=0.193  Sum_probs=16.7

Q ss_pred             CCCEEEEEcCCCCChHHHHHHH
Q psy7219         241 RGECFGLLGLNGAGKTTTFKML  262 (288)
Q Consensus       241 ~Ge~~gllG~NGaGKTT~~~~l  262 (288)
                      +-+..-|.+|.|+|||+.+-.+
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~   28 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAA   28 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHH
Confidence            3455667999999999987443

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=83.19  E-value=0.29  Score=46.40  Aligned_cols=27  Identities=30%  Similarity=0.329  Sum_probs=23.3

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      ++.||+-+-|.+|||||+..|.+....
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            357899999999999999999987654

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.15  E-value=0.11  Score=41.76  Aligned_cols=24  Identities=29%  Similarity=0.296  Sum_probs=19.4

Q ss_pred             eCCCEEEEEcCCCCChHHHHHHHh
Q psy7219         240 GRGECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~~~l~  263 (288)
                      -+|+.+.+.+|+|+|||+..-+..
T Consensus        56 l~g~~~~i~apTGsGKT~~~~~~~   79 (237)
T d1gkub1          56 LRKESFAATAPTGVGKTSFGLAMS   79 (237)
T ss_dssp             HTTCCEECCCCBTSCSHHHHHHHH
T ss_pred             HCCCCEEEEecCCChHHHHHHHHH
Confidence            368888999999999998765443

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=82.93  E-value=0.34  Score=40.00  Aligned_cols=21  Identities=24%  Similarity=0.176  Sum_probs=18.7

Q ss_pred             CEEEEEcCCCCChHHHHHHHh
Q psy7219         243 ECFGLLGLNGAGKTTTFKMLT  263 (288)
Q Consensus       243 e~~gllG~NGaGKTT~~~~l~  263 (288)
                      .+++|.|.-|.||||+.+.+.
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~   65 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQAL   65 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            378899999999999998874

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.74  E-value=0.23  Score=42.74  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=19.6

Q ss_pred             EEEEcCCCCChHHHHHHH---hCCCC
Q psy7219         245 FGLLGLNGAGKTTTFKML---TGAIK  267 (288)
Q Consensus       245 ~gllG~NGaGKTT~~~~l---~G~~~  267 (288)
                      ++++|+-|+||||+...|   +|...
T Consensus        20 I~iiGhvd~GKTTL~d~Ll~~~g~i~   45 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLVQRAGIIS   45 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHHHHHBCCB
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcc
Confidence            789999999999999999   46543

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=82.52  E-value=0.38  Score=37.90  Aligned_cols=22  Identities=18%  Similarity=0.240  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCChHHHHHHHhCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGA  265 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~  265 (288)
                      .+-+-||.|.||||+.+.++..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~~   47 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSRY   47 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHh
Confidence            4568899999999999987754

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=81.82  E-value=0.31  Score=39.15  Aligned_cols=20  Identities=30%  Similarity=0.547  Sum_probs=16.7

Q ss_pred             EEEEcCCCCChHHHHHHHhC
Q psy7219         245 FGLLGLNGAGKTTTFKMLTG  264 (288)
Q Consensus       245 ~gllG~NGaGKTT~~~~l~G  264 (288)
                      +-+-||+|.||||+.++++.
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            44679999999999998763

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.63  E-value=0.36  Score=41.01  Aligned_cols=20  Identities=40%  Similarity=0.627  Sum_probs=17.7

Q ss_pred             eCCCEEEEEcCCCCChHHHH
Q psy7219         240 GRGECFGLLGLNGAGKTTTF  259 (288)
Q Consensus       240 ~~Ge~~gllG~NGaGKTT~~  259 (288)
                      +.|++..+.|-+|.|||||-
T Consensus        12 ~~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          12 KQGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TTCCEEEEECCTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            36788889999999999997

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=81.50  E-value=0.37  Score=41.66  Aligned_cols=22  Identities=32%  Similarity=0.462  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChHHHHHHHhCCC
Q psy7219         245 FGLLGLNGAGKTTTFKMLTGAI  266 (288)
Q Consensus       245 ~gllG~NGaGKTT~~~~l~G~~  266 (288)
                      +-++||+|.|||-+.|.|+...
T Consensus        71 iLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          71 ILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             eeeeCCCCccHHHHHHHHHhhc
Confidence            5689999999999999998654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=80.95  E-value=0.58  Score=38.44  Aligned_cols=27  Identities=19%  Similarity=0.229  Sum_probs=22.6

Q ss_pred             EEEEEcCCCCChHHHHHHHhCCCCCCC
Q psy7219         244 CFGLLGLNGAGKTTTFKMLTGAIKPTS  270 (288)
Q Consensus       244 ~~gllG~NGaGKTT~~~~l~G~~~pt~  270 (288)
                      .++++|..-+||||+++.|.|......
T Consensus       114 ~v~vvG~PNvGKSsliN~L~~~~~~~~  140 (273)
T d1puja_         114 RALIIGIPNVGKSTLINRLAKKNIAKT  140 (273)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSCCC--
T ss_pred             EEEEEecCccchhhhhhhhhccceEEE
Confidence            588999999999999999999765443