Psyllid ID: psy7224

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------
MKQKIELSVFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYLNPKTGHWGQSHISMGALGDSFYEYLLKAWIQSNKEDTEGPESFKFTDTLEAKAYRSQDKYYILRPEVIESYFYLWRVTKDPKYREWGWDYVQMMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIIDGLDTLYIMGLTDEYEDGKKWVAESLTLDDKTHKVVMG
ccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccEEccccccccccccccccccHHcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccEEEEcccccEEccEEEcccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccc
cccccEEEEEEEEEEEHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccEccccccccccccccccccEHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccEEcccccccccccEEEcccccHHHHHHHHHHHHccccHcccHHHHHHHHHHHHHHHHHHcccEccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccc
MKQKIELSVFETTIRFIGAILTLysftgdpmyrdKAVHIADkmlpafktptgiphalinvytgdsknyawasgSASILSELGTLHLEFVYLsdvtgnpiyrEKVEKIRSVISSiekpnglypnylnpktghwgqshismgaLGDSFYEYLLKAWIQSnkedtegpesfkftdTLEAKAyrsqdkyyilrpEVIESYFYLWRvtkdpkyrewGWDYVQMMKHAWDNYVTyawgknelkplsrrghsgsifgsaelGMTIIDGLDTLYIMGLTDEYEDGKKWVAESltlddkthkvvmg
MKQKIELSVFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYLNPKTGHWGQSHISMGALGDSFYEYLLKAWIQSNkedtegpesfkftdtleakayrsqdkyyilrpeVIESYFYLWRVTKDPKYREWGWDYVQMMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIIDGLDTLYIMGLTDEYEDGKKWVAesltlddkthkvvmg
MKQKIELSVFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYLNPKTGHWGQSHISMGALGDSFYEYLLKAWIQSNKEDTEGPESFKFTDTLEAKAYRSQDKYYILRPEVIESYFYLWRVTKDPKYREWGWDYVQMMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIIDGLDTLYIMGLTDEYEDGKKWVAESLTLDDKTHKVVMG
*****ELSVFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYLNPKTGHWGQSHISMGALGDSFYEYLLKAWIQ************KFTDTLEAKAYRSQDKYYILRPEVIESYFYLWRVTKDPKYREWGWDYVQMMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIIDGLDTLYIMGLTDEYEDGKKWVAESLTL**********
*KQKIELSVFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYLNPKTGHWGQSHISMGALGDSFYEYLLKAWIQSNKEDTEGPESFKFTDTLEAKAYRSQDKYYILRPEVIESYFYLWRVTKDPKYREWGWDYVQMMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIIDGLDTLYIMGLTDEYEDGKKWVAESLTLDDKTHKVVMG
MKQKIELSVFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYLNPKTGHWGQSHISMGALGDSFYEYLLKAWIQSNKEDTEGPESFKFTDTLEAKAYRSQDKYYILRPEVIESYFYLWRVTKDPKYREWGWDYVQMMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIIDGLDTLYIMGLTDEYEDGKKWVAESLTLDDKTHKVVMG
MKQKIELSVFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYLNPKTGHWGQSHISMGALGDSFYEYLLKAWIQSNKEDTEGPESFKFTDTLEAKAYRSQDKYYILRPEVIESYFYLWRVTKDPKYREWGWDYVQMMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIIDGLDTLYIMGLTDEYEDGKKWVAESLTLDD********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKQKIELSVFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYLNPKTGHWGQSHISMGALGDSFYEYLLKAWIQSNKEDTEGPESFKFTDTLEAKAYRSQDKYYILRPEVIESYFYLWRVTKDPKYREWGWDYVQMMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIIDGLDTLYIMGLTDEYEDGKKWVAESLTLDDKTHKVVMG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query297 2.2.26 [Sep-21-2011]
P53625643 Mannosyl-oligosaccharide no N/A 0.393 0.181 0.711 4e-69
P53624667 Mannosyl-oligosaccharide no N/A 0.393 0.175 0.711 7e-69
P33908653 Mannosyl-oligosaccharide yes N/A 0.511 0.232 0.591 2e-54
P45701469 Mannosyl-oligosaccharide yes N/A 0.545 0.345 0.576 2e-54
P45700655 Mannosyl-oligosaccharide yes N/A 0.515 0.233 0.578 9e-54
O02773659 Mannosyl-oligosaccharide yes N/A 0.531 0.239 0.584 1e-53
P39098641 Mannosyl-oligosaccharide no N/A 0.569 0.263 0.555 6e-52
O60476641 Mannosyl-oligosaccharide no N/A 0.569 0.263 0.543 3e-51
Q18788590 Mannosyl-oligosaccharide yes N/A 0.356 0.179 0.544 4e-49
Q9NR34630 Mannosyl-oligosaccharide no N/A 0.525 0.247 0.512 1e-45
>sp|P53625|MA122_DROME Mannosyl-oligosaccharide alpha-1,2-mannosidase isoform B OS=Drosophila melanogaster GN=alpha-Man-I PE=2 SV=2 Back     alignment and function desciption
 Score =  261 bits (667), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 116/163 (71%), Positives = 140/163 (85%)

Query: 6   ELSVFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDS 65
           ELSVFET IRF+G +LTLY+FTGDP+Y++KA H+ADK+LPAF+TPTGIP+AL+N  TG +
Sbjct: 258 ELSVFETNIRFVGGMLTLYAFTGDPLYKEKAQHVADKLLPAFQTPTGIPYALVNTKTGVA 317

Query: 66  KNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYL 125
           KNY WASG +SILSE GTLHLEF YLSD+TGNP+YRE+V+ IR V+  IEKP GLYPN+L
Sbjct: 318 KNYGWASGGSSILSEFGTLHLEFAYLSDITGNPLYRERVQTIRQVLKEIEKPKGLYPNFL 377

Query: 126 NPKTGHWGQSHISMGALGDSFYEYLLKAWIQSNKEDTEGPESF 168
           NPKTG WGQ H+S+GALGDS+YEYLLKAW+QS + D E  E F
Sbjct: 378 NPKTGKWGQLHMSLGALGDSYYEYLLKAWLQSGQTDEEAREMF 420
Involved in the maturation of Asn-linked oligosaccharides. Progressively trim alpha-1,2-linked mannose residues from Man(9)GlcNAc(2) to produce Man(5)GlcNAc(2).
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 1EC: 3
>sp|P53624|MA121_DROME Mannosyl-oligosaccharide alpha-1,2-mannosidase isoform A OS=Drosophila melanogaster GN=alpha-Man-I PE=1 SV=2 Back     alignment and function description
>sp|P33908|MA1A1_HUMAN Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA OS=Homo sapiens GN=MAN1A1 PE=1 SV=3 Back     alignment and function description
>sp|P45701|MA1A1_RABIT Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA (Fragment) OS=Oryctolagus cuniculus GN=MAN1A1 PE=1 SV=1 Back     alignment and function description
>sp|P45700|MA1A1_MOUSE Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA OS=Mus musculus GN=Man1a1 PE=1 SV=1 Back     alignment and function description
>sp|O02773|MA1A1_PIG Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA OS=Sus scrofa GN=MAN1A1 PE=1 SV=1 Back     alignment and function description
>sp|P39098|MA1A2_MOUSE Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB OS=Mus musculus GN=Man1a2 PE=2 SV=1 Back     alignment and function description
>sp|O60476|MA1A2_HUMAN Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB OS=Homo sapiens GN=MAN1A2 PE=2 SV=1 Back     alignment and function description
>sp|Q18788|MAN12_CAEEL Mannosyl-oligosaccharide 1,2-alpha-mannosidase C52E4.5 OS=Caenorhabditis elegans GN=C52E4.5 PE=1 SV=1 Back     alignment and function description
>sp|Q9NR34|MA1C1_HUMAN Mannosyl-oligosaccharide 1,2-alpha-mannosidase IC OS=Homo sapiens GN=MAN1C1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query297
195058786 629 GH17781 [Drosophila grimshawi] gi|193896 0.414 0.195 0.723 4e-68
195130415 656 GI15126 [Drosophila mojavensis] gi|19390 0.420 0.190 0.717 6e-68
221329820 684 alpha mannosidase I, isoform I [Drosophi 0.393 0.171 0.711 2e-67
195553840 678 GD24646 [Drosophila simulans] gi|1942027 0.548 0.240 0.711 2e-67
840752 643 alpha 1,2 mannosidase [Drosophila melano 0.393 0.181 0.711 2e-67
24640988 643 alpha mannosidase I, isoform K [Drosophi 0.393 0.181 0.711 2e-67
195350646 647 GM11326 [Drosophila sechellia] gi|194123 0.393 0.180 0.711 3e-67
195392914 655 GJ18983 [Drosophila virilis] gi|19414960 0.387 0.175 0.711 4e-67
24640986 667 alpha mannosidase I, isoform J [Drosophi 0.393 0.175 0.711 4e-67
840754 667 alpha 1,2 mannosidase [Drosophila melano 0.393 0.175 0.711 4e-67
>gi|195058786|ref|XP_001995500.1| GH17781 [Drosophila grimshawi] gi|193896286|gb|EDV95152.1| GH17781 [Drosophila grimshawi] Back     alignment and taxonomy information
 Score =  264 bits (674), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 118/163 (72%), Positives = 142/163 (87%)

Query: 6   ELSVFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDS 65
           ELSVFET IRF+G +LTLY+FTGDPMY++KA +IADK+LPAF+TPTGIP+AL+N  TG++
Sbjct: 244 ELSVFETNIRFVGGMLTLYAFTGDPMYKEKAQNIADKLLPAFQTPTGIPYALVNTKTGNA 303

Query: 66  KNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYL 125
           KNY WASGS+SILSE GTLHLEF YLSD+TGNP+YRE+V+ IR V+  IEKP GLYPN+L
Sbjct: 304 KNYGWASGSSSILSEFGTLHLEFAYLSDITGNPLYRERVQTIRQVLKEIEKPKGLYPNFL 363

Query: 126 NPKTGHWGQSHISMGALGDSFYEYLLKAWIQSNKEDTEGPESF 168
           NPKTG WGQ H+S+GALGDSFYEYLLKAW+QS + D E  E +
Sbjct: 364 NPKTGKWGQLHMSLGALGDSFYEYLLKAWLQSGQTDEEAREMY 406

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|195130415|ref|XP_002009647.1| GI15126 [Drosophila mojavensis] gi|193908097|gb|EDW06964.1| GI15126 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|221329820|ref|NP_727408.2| alpha mannosidase I, isoform I [Drosophila melanogaster] gi|85861129|gb|ABC86513.1| GH09342p [Drosophila melanogaster] gi|220901725|gb|AAN09256.2| alpha mannosidase I, isoform I [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195553840|ref|XP_002076775.1| GD24646 [Drosophila simulans] gi|194202765|gb|EDX16341.1| GD24646 [Drosophila simulans] Back     alignment and taxonomy information
>gi|840752|emb|CAA57963.1| alpha 1,2 mannosidase [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|24640988|ref|NP_511105.2| alpha mannosidase I, isoform K [Drosophila melanogaster] gi|442615769|ref|NP_001259402.1| alpha mannosidase I, isoform P [Drosophila melanogaster] gi|45645028|sp|P53625.2|MA122_DROME RecName: Full=Mannosyl-oligosaccharide alpha-1,2-mannosidase isoform B; AltName: Full=Man(9)-alpha-mannosidase; AltName: Full=Mannosidase-1 gi|22832018|gb|AAF46571.3| alpha mannosidase I, isoform K [Drosophila melanogaster] gi|440216609|gb|AGB95245.1| alpha mannosidase I, isoform P [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195350646|ref|XP_002041850.1| GM11326 [Drosophila sechellia] gi|194123655|gb|EDW45698.1| GM11326 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|195392914|ref|XP_002055099.1| GJ18983 [Drosophila virilis] gi|194149609|gb|EDW65300.1| GJ18983 [Drosophila virilis] Back     alignment and taxonomy information
>gi|24640986|ref|NP_727407.1| alpha mannosidase I, isoform J [Drosophila melanogaster] gi|45554685|ref|NP_996395.1| alpha mannosidase I, isoform H [Drosophila melanogaster] gi|45554697|ref|NP_996396.1| alpha mannosidase I, isoform O [Drosophila melanogaster] gi|45554711|ref|NP_996397.1| alpha mannosidase I, isoform N [Drosophila melanogaster] gi|45554725|ref|NP_996398.1| alpha mannosidase I, isoform M [Drosophila melanogaster] gi|45554736|ref|NP_996399.1| alpha mannosidase I, isoform L [Drosophila melanogaster] gi|45645025|sp|P53624.2|MA121_DROME RecName: Full=Mannosyl-oligosaccharide alpha-1,2-mannosidase isoform A; AltName: Full=Man(9)-alpha-mannosidase; AltName: Full=Mannosidase-1 gi|7291136|gb|AAF46570.1| alpha mannosidase I, isoform J [Drosophila melanogaster] gi|39752629|gb|AAR30196.1| RE43942p [Drosophila melanogaster] gi|45446895|gb|AAS65302.1| alpha mannosidase I, isoform L [Drosophila melanogaster] gi|45446896|gb|AAS65303.1| alpha mannosidase I, isoform M [Drosophila melanogaster] gi|45446897|gb|AAS65304.1| alpha mannosidase I, isoform N [Drosophila melanogaster] gi|45446898|gb|AAS65305.1| alpha mannosidase I, isoform O [Drosophila melanogaster] gi|45446899|gb|AAS65306.1| alpha mannosidase I, isoform H [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|840754|emb|CAA57962.1| alpha 1,2 mannosidase [Drosophila melanogaster] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query297
FB|FBgn0259170667 alpha-Man-I "alpha Mannosidase 0.548 0.244 0.711 9.2e-86
UNIPROTKB|E1BT33643 MAN1A2 "Uncharacterized protei 0.569 0.262 0.561 2.5e-73
UNIPROTKB|E1BI49643 LOC100849524 "Uncharacterized 0.569 0.262 0.567 1.8e-72
ZFIN|ZDB-GENE-041014-321 639 man1a1 "mannosidase, alpha, cl 0.569 0.264 0.561 2.3e-72
UNIPROTKB|F1SAY6631 MAN1A2 "Uncharacterized protei 0.569 0.267 0.555 7.6e-72
UNIPROTKB|P33908653 MAN1A1 "Mannosyl-oligosacchari 0.569 0.258 0.567 1.2e-71
UNIPROTKB|E2RDC8641 MAN1A2 "Uncharacterized protei 0.569 0.263 0.555 1.2e-71
UNIPROTKB|F1SF40659 MAN1A1 "Mannosyl-oligosacchari 0.569 0.256 0.561 5.3e-71
UNIPROTKB|O02773659 MAN1A1 "Mannosyl-oligosacchari 0.569 0.256 0.561 5.3e-71
MGI|MGI:104677655 Man1a "mannosidase 1, alpha" [ 0.569 0.258 0.555 1.1e-70
FB|FBgn0259170 alpha-Man-I "alpha Mannosidase I" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 661 (237.7 bits), Expect = 9.2e-86, Sum P(2) = 9.2e-86
 Identities = 116/163 (71%), Positives = 140/163 (85%)

Query:     6 ELSVFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDS 65
             ELSVFET IRF+G +LTLY+FTGDP+Y++KA H+ADK+LPAF+TPTGIP+AL+N  TG +
Sbjct:   282 ELSVFETNIRFVGGMLTLYAFTGDPLYKEKAQHVADKLLPAFQTPTGIPYALVNTKTGVA 341

Query:    66 KNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYL 125
             KNY WASG +SILSE GTLHLEF YLSD+TGNP+YRE+V+ IR V+  IEKP GLYPN+L
Sbjct:   342 KNYGWASGGSSILSEFGTLHLEFAYLSDITGNPLYRERVQTIRQVLKEIEKPKGLYPNFL 401

Query:   126 NPKTGHWGQSHISMGALGDSFYEYLLKAWIQSNKEDTEGPESF 168
             NPKTG WGQ H+S+GALGDS+YEYLLKAW+QS + D E  E F
Sbjct:   402 NPKTGKWGQLHMSLGALGDSYYEYLLKAWLQSGQTDEEAREMF 444
GO:0006487 "protein N-linked glycosylation" evidence=ISS;NAS
GO:0004571 "mannosyl-oligosaccharide 1,2-alpha-mannosidase activity" evidence=ISS;NAS
GO:0005794 "Golgi apparatus" evidence=ISS
GO:0000139 "Golgi membrane" evidence=NAS
GO:0016020 "membrane" evidence=IEA
GO:0005509 "calcium ion binding" evidence=IEA
GO:0008340 "determination of adult lifespan" evidence=IMP
GO:0072347 "response to anesthetic" evidence=IMP
GO:0035010 "encapsulation of foreign target" evidence=IMP
UNIPROTKB|E1BT33 MAN1A2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BI49 LOC100849524 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041014-321 man1a1 "mannosidase, alpha, class 1A, member 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1SAY6 MAN1A2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P33908 MAN1A1 "Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RDC8 MAN1A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SF40 MAN1A1 "Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|O02773 MAN1A1 "Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:104677 Man1a "mannosidase 1, alpha" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O02773MA1A1_PIG3, ., 2, ., 1, ., 1, 1, 30.58490.53190.2397yesN/A
P45700MA1A1_MOUSE3, ., 2, ., 1, ., 1, 1, 30.57860.51510.2335yesN/A
P45701MA1A1_RABIT3, ., 2, ., 1, ., 1, 1, 30.57660.54540.3454yesN/A
P33908MA1A1_HUMAN3, ., 2, ., 1, ., 1, 1, 30.59110.51170.2327yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.113LOW CONFIDENCE prediction!
3rd Layer3.2.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query297
pfam01532445 pfam01532, Glyco_hydro_47, Glycosyl hydrolase fami 8e-63
PTZ00470522 PTZ00470, PTZ00470, glycoside hydrolase family 47 2e-62
pfam01532 445 pfam01532, Glyco_hydro_47, Glycosyl hydrolase fami 6e-25
PTZ00470 522 PTZ00470, PTZ00470, glycoside hydrolase family 47 7e-23
pfam01532445 pfam01532, Glyco_hydro_47, Glycosyl hydrolase fami 4e-18
PTZ00470522 PTZ00470, PTZ00470, glycoside hydrolase family 47 1e-16
>gnl|CDD|216556 pfam01532, Glyco_hydro_47, Glycosyl hydrolase family 47 Back     alignment and domain information 
 Score =  204 bits (521), Expect = 8e-63
 Identities = 73/196 (37%), Positives = 113/196 (57%), Gaps = 12/196 (6%)

Query: 6   ELSVFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDS 65
           ++SVFETTIR++G +L+ Y  +GD +  +KAV +AD++LPAF TPTGIP+  +N+  G  
Sbjct: 72  DVSVFETTIRYLGGLLSAYDLSGDDLLLEKAVDLADRLLPAFDTPTGIPYPRVNL--GKG 129

Query: 66  KNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSI--EKPNGLYPN 123
                A G AS L+E GTL LEF  LS +TG+P Y +  E++   +         GL P 
Sbjct: 130 GVNPVAGG-ASSLAEAGTLQLEFTRLSQLTGDPKYEDAAERVMDALWKSQSRSLPGLVPI 188

Query: 124 YLNPKTGHWGQSHISMGALGDSFYEYLLKAWIQSNKEDTEGPESFKFTDTLEAKAYRSQD 183
           +++P TG +    I++GA GDS+YEYLLK +I    +D +  + +        +A  +  
Sbjct: 189 FIDPSTGQFTGGDITLGAGGDSYYEYLLKQYILLGGKDPQYLDMYD-------EAMDAIK 241

Query: 184 KYYILRPEVIESYFYL 199
           K+ + RP       ++
Sbjct: 242 KHLLFRPSTPSDLLFV 257

Members of this family are alpha-mannosidases that catalyze the hydrolysis of the terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide Man(9)(GlcNAc)(2). Length = 445
>gnl|CDD|240427 PTZ00470, PTZ00470, glycoside hydrolase family 47 protein; Provisional Back     alignment and domain information
>gnl|CDD|216556 pfam01532, Glyco_hydro_47, Glycosyl hydrolase family 47 Back     alignment and domain information
>gnl|CDD|240427 PTZ00470, PTZ00470, glycoside hydrolase family 47 protein; Provisional Back     alignment and domain information
>gnl|CDD|216556 pfam01532, Glyco_hydro_47, Glycosyl hydrolase family 47 Back     alignment and domain information
>gnl|CDD|240427 PTZ00470, PTZ00470, glycoside hydrolase family 47 protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 297
PTZ00470522 glycoside hydrolase family 47 protein; Provisional 100.0
KOG2431|consensus546 100.0
KOG2204|consensus625 100.0
PF01532452 Glyco_hydro_47: Glycosyl hydrolase family 47; Inte 100.0
KOG2429|consensus 622 100.0
KOG2430|consensus 587 100.0
KOG2204|consensus 625 99.6
KOG2431|consensus 546 99.52
PTZ00470 522 glycoside hydrolase family 47 protein; Provisional 99.52
KOG2429|consensus 622 99.31
PF01532 452 Glyco_hydro_47: Glycosyl hydrolase family 47; Inte 99.24
KOG2430|consensus 587 98.58
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 97.93
PF03663370 Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int 97.67
COG1331667 Highly conserved protein containing a thioredoxin 97.53
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 97.28
PF07944 520 DUF1680: Putative glycosyl hydrolase of unknown fu 96.88
PF07470 336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 96.73
PF07944 520 DUF1680: Putative glycosyl hydrolase of unknown fu 95.86
PF07221346 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN 94.82
cd04791321 LanC_SerThrkinase Lanthionine synthetase C-like do 94.8
PF06917 557 Pectate_lyase_2: Periplasmic pectate lyase; InterP 93.06
COG3533 589 Uncharacterized protein conserved in bacteria [Fun 92.97
cd04791321 LanC_SerThrkinase Lanthionine synthetase C-like do 91.92
COG1331667 Highly conserved protein containing a thioredoxin 90.58
cd04794343 euk_LANCL eukaryotic Lanthionine synthetase C-like 88.93
COG2942388 N-acyl-D-glucosamine 2-epimerase [Carbohydrate tra 86.28
cd04792825 LanM-like LanM-like proteins. LanM is a bifunction 86.2
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 86.05
>PTZ00470 glycoside hydrolase family 47 protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.2e-87  Score=661.94  Aligned_cols=275  Identities=44%  Similarity=0.764  Sum_probs=251.3

Q ss_pred             cCcccCccchhhhhhhhhhhhhccCCCchHHHHHHHHHHHHhcccCCCCCCcccceeecCCCCCCCCcCCCCcceecccc
Q psy7224           3 QKIELSVFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWASGSASILSELG   82 (297)
Q Consensus         3 ~~~~vsvFEttIR~LGGLLSAy~Ls~d~~lL~kA~~lad~Ll~AF~tp~giP~~~vn~~~g~~~~~~~~~~~~~~lAe~g   82 (297)
                      ++..|||||||||+||||||||+||+|++||+||+||||+|+|||+||||||++.||+++|..+..+|. .+.+++||+|
T Consensus       147 ~~~~vsvFEttIR~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g~~~~~~~~-~~~~~lAe~g  225 (522)
T PTZ00470        147 TGLGVSVFETTIRVLGGLLSAYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINLATGRKSYPGWA-GGCSILSEVG  225 (522)
T ss_pred             CCCeeeeeeeehhhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccCCCCCcccC-CCccchhhhh
Confidence            468999999999999999999999999999999999999999999999999999999999998877775 4778999999


Q ss_pred             cceeehhhhHhhhCChhhHHHHHHHHHHHHhcCCC-CCCCCccccCCCCccccceeeecCCchhHHHHHHHHHHhhCCCC
Q psy7224          83 TLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKP-NGLYPNYLNPKTGHWGQSHISMGALGDSFYEYLLKAWIQSNKED  161 (297)
Q Consensus        83 s~~LEf~~LS~lTgd~~y~~~a~~~~~~l~~~~~~-~gL~p~~i~~~~g~~~~~~~~~Ga~~DS~yEYLlK~~~l~g~~~  161 (297)
                      |++|||++||++||||+|+++|+++++.|++.++. +||+|+.||+.+|+|.++.+++||++|||||||||+|+|+|+.+
T Consensus       226 Sl~LEF~~LS~lTGd~kY~~~a~~i~~~l~~~~~~~~GL~p~~i~~~~g~~~~~~~siGa~~DS~YEYLlK~~il~~~~d  305 (522)
T PTZ00470        226 TLQLEFNYLSEITGDPKYAEYVDKVMDALFSMKPAINGLYPIFLNPDAGRFCGNHISLGALGDSYYEYLLKQWLYTNGRE  305 (522)
T ss_pred             hHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhcCCCCCCccceEECCccCccCCCceeecCCcchhHHHHHHHHHhcCCCc
Confidence            99999999999999999999999999999987765 89999999999999999999999999999999999999998766


Q ss_pred             CC------------------------------------------------------------------------------
Q psy7224         162 TE------------------------------------------------------------------------------  163 (297)
Q Consensus       162 ~~------------------------------------------------------------------------------  163 (297)
                      ..                                                                              
T Consensus       306 ~~~~~~~~~a~~~i~~~l~~~s~~~~~~v~~~~~~~~~~~~~hL~cF~gG~~aLg~~~~~~~~~~~~~~~~~~a~~l~~t  385 (522)
T PTZ00470        306 ERYRRLFVESAKGIIEHLYKRSPKGLTYIAEMDGGSLTNKMEHLACFAGGMFALGAAINITPDDEKSARYMEVGEEVTKT  385 (522)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCcEEEeeccCCcCcchhhhhhhhccchhhhcccccccccccccHHHHHHHHHHHHH
Confidence            32                                                                              


Q ss_pred             ------------CCccccccchhhhhhhcccccccCCChhhhhhhhhhhhhcCCCCchhhhHHHHHHHHHhhcccccccc
Q psy7224         164 ------------GPESFKFTDTLEAKAYRSQDKYYILRPEVIESYFYLWRVTKDPKYREWGWDYVQMMKHAWDNYVTYAW  231 (297)
Q Consensus       164 ------------~PE~~~~~~~~~~~~~~~~~~~y~lRPE~iES~fyl~r~T~d~~yre~~w~i~~a~~~~~~~y~gya~  231 (297)
                                  +||+|.|..+.........+++|+||||+|||+|||||+|||++||+|||+||++|+++||+.+|||+
T Consensus       386 C~~~Y~~~~tGl~PE~~~~~~~~~~~~~~~~d~~Y~LRPE~iES~fylyR~TgD~~yre~gW~~f~ai~k~~rt~~Gya~  465 (522)
T PTZ00470        386 CYETYATSPTGLGPEIFHFDPNSGDISPNVHDSHYILRPETVESIFILYRLTGDPKYREWAWKIFQAIEKHCKTENGYSG  465 (522)
T ss_pred             HHHHHHhcccCCCCceEEeccCccccccccCCCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCccccc
Confidence                        56666665432222234567899999999999999999999999999999999999999999999999


Q ss_pred             ccccccCC-CCCCCCCCCCCCCcchhhHHhhhhHHHHhcCcccccccccccccccc
Q psy7224         232 GKNELKPL-SRRGHSGSIFGSAELGMTIIDGLDTLYIMGLTDEYEDGKKWVAESLT  286 (297)
Q Consensus       232 ~~Dv~~p~-s~~d~~~Sf~~~~~~~~tl~eTLkyLyLmf~~~e~~~~~~~V~nt~~  286 (297)
                      +.||..+. ...|+|||||        ||||||||||+|++++++++++|||||.-
T Consensus       466 i~dV~~~~~~~~D~MeSFf--------laETLKYlYLlFsd~~~i~ld~~VFnTEA  513 (522)
T PTZ00470        466 LKNVLTVHPQQDDFQESFF--------LAETLKYLYLLFQPDHVIPLDKYVFNTEA  513 (522)
T ss_pred             ccccCCCCCCcCCcccchh--------HHHHHHHHHheecCccccccCCeEECCCC
Confidence            99999754 3449999999        99999999999999999999999999873

>KOG2431|consensus Back     alignment and domain information
>KOG2204|consensus Back     alignment and domain information
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3 Back     alignment and domain information
>KOG2429|consensus Back     alignment and domain information
>KOG2430|consensus Back     alignment and domain information
>KOG2204|consensus Back     alignment and domain information
>KOG2431|consensus Back     alignment and domain information
>PTZ00470 glycoside hydrolase family 47 protein; Provisional Back     alignment and domain information
>KOG2429|consensus Back     alignment and domain information
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3 Back     alignment and domain information
>KOG2430|consensus Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5 Back     alignment and domain information
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases Back     alignment and domain information
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins Back     alignment and domain information
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein Back     alignment and domain information
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd04792 LanM-like LanM-like proteins Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query297
1nxc_A478 Structure Of Mouse Golgi Alpha-1,2-Mannosidase Ia R 8e-55
1nxc_A 478 Structure Of Mouse Golgi Alpha-1,2-Mannosidase Ia R 2e-18
1fmi_A458 Crystal Structure Of Human Class I Alpha1,2-Mannosi 2e-27
1fmi_A 458 Crystal Structure Of Human Class I Alpha1,2-Mannosi 4e-12
1x9d_A538 Crystal Structure Of Human Class I Alpha-1,2-Mannos 2e-27
1x9d_A 538 Crystal Structure Of Human Class I Alpha-1,2-Mannos 3e-12
1fo2_A460 Crystal Structure Of Human Class I Alpha1,2-Mannosi 2e-27
1fo2_A 460 Crystal Structure Of Human Class I Alpha1,2-Mannosi 4e-12
1dl2_A 511 Crystal Structure Of Class I Alpha-1,2-Mannosidase 6e-24
1g6i_A 545 Crystal Structure Of The Yeast Alpha-1,2-Mannosidas 6e-24
4ayo_A447 Structure Of The Gh47 Processing Alpha-1,2-mannosid 1e-15
4ayo_A 447 Structure Of The Gh47 Processing Alpha-1,2-mannosid 2e-10
2ri8_A475 Penicillium Citrinum Alpha-1,2-Mannosidase Complex 2e-14
2ri8_A475 Penicillium Citrinum Alpha-1,2-Mannosidase Complex 2e-04
1kkt_A511 Structure Of P. Citrinum Alpha 1,2-Mannosidase Reve 2e-14
1kkt_A511 Structure Of P. Citrinum Alpha 1,2-Mannosidase Reve 2e-04
1kkt_A 511 Structure Of P. Citrinum Alpha 1,2-Mannosidase Reve 4e-04
1hcu_A 503 Alpha-1,2-Mannosidase From Trichoderma Reesei Lengt 4e-13
1hcu_A503 Alpha-1,2-Mannosidase From Trichoderma Reesei Lengt 7e-05
>pdb|1NXC|A Chain A, Structure Of Mouse Golgi Alpha-1,2-Mannosidase Ia Reveals The Molecular Basis For Substrate Specificity Among Class I Enzymes (Family 47 Glycosidases) Length = 478 Back     alignment and structure 
Iteration: 1

 Score =  210 bits (534), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 92/163 (56%), Positives = 129/163 (79%)
Query: 6   ELSVFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDS 65
           E+SVFE  IRF+G +L+ Y  +G+ ++R KAV +  K+LPAF TP+GIP AL+N+ +G  
Sbjct: 100 EVSVFEVNIRFVGGLLSAYYLSGEEIFRKKAVELGVKLLPAFHTPSGIPWALLNMKSGIG 159
Query: 66  KNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYL 125
           +N+ WASG +SIL+E GTLHLEF++LS ++G+P++ EKV KIR+V++ ++KP GLYPNYL
Sbjct: 160 RNWPWASGGSSILAEFGTLHLEFMHLSHLSGDPVFAEKVMKIRTVLNKLDKPEGLYPNYL 219
Query: 126 NPKTGHWGQSHISMGALGDSFYEYLLKAWIQSNKEDTEGPESF 168
           NP +G WGQ H+S+G LGDSFYEYLLKAW+ S+K D E  + +
Sbjct: 220 NPSSGQWGQHHVSVGGLGDSFYEYLLKAWLMSDKTDLEAKKMY 262
>pdb|1NXC|A Chain A, Structure Of Mouse Golgi Alpha-1,2-Mannosidase Ia Reveals The Molecular Basis For Substrate Specificity Among Class I Enzymes (Family 47 Glycosidases) Length = 478 Back     alignment and structure
>pdb|1FMI|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase Length = 458 Back     alignment and structure
>pdb|1FMI|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase Length = 458 Back     alignment and structure
>pdb|1X9D|A Chain A, Crystal Structure Of Human Class I Alpha-1,2-Mannosidase In Complex With Thio-Disaccharide Substrate Analogue Length = 538 Back     alignment and structure
>pdb|1X9D|A Chain A, Crystal Structure Of Human Class I Alpha-1,2-Mannosidase In Complex With Thio-Disaccharide Substrate Analogue Length = 538 Back     alignment and structure
>pdb|1FO2|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase In Complex With 1-Deoxymannojirimycin Length = 460 Back     alignment and structure
>pdb|1FO2|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase In Complex With 1-Deoxymannojirimycin Length = 460 Back     alignment and structure
>pdb|1DL2|A Chain A, Crystal Structure Of Class I Alpha-1,2-Mannosidase From Saccharomyces Cerevisiae At 1.54 Angstrom Resolution Length = 511 Back     alignment and structure
>pdb|1G6I|A Chain A, Crystal Structure Of The Yeast Alpha-1,2-Mannosidase With Bound 1- Deoxymannojirimycin At 1.59 A Resolution Length = 545 Back     alignment and structure
>pdb|4AYO|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase From Caulobacter Strain K31 Length = 447 Back     alignment and structure
>pdb|4AYO|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase From Caulobacter Strain K31 Length = 447 Back     alignment and structure
>pdb|2RI8|A Chain A, Penicillium Citrinum Alpha-1,2-Mannosidase Complex With Glycerol Length = 475 Back     alignment and structure
>pdb|2RI8|A Chain A, Penicillium Citrinum Alpha-1,2-Mannosidase Complex With Glycerol Length = 475 Back     alignment and structure
>pdb|1KKT|A Chain A, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The Basis For Differences In Specificity Of The Er And Golgi Class I Enzymes Length = 511 Back     alignment and structure
>pdb|1KKT|A Chain A, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The Basis For Differences In Specificity Of The Er And Golgi Class I Enzymes Length = 511 Back     alignment and structure
>pdb|1KKT|A Chain A, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The Basis For Differences In Specificity Of The Er And Golgi Class I Enzymes Length = 511 Back     alignment and structure
>pdb|1HCU|A Chain A, Alpha-1,2-Mannosidase From Trichoderma Reesei Length = 503 Back     alignment and structure
>pdb|1HCU|A Chain A, Alpha-1,2-Mannosidase From Trichoderma Reesei Length = 503 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query297
1nxc_A478 Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; 1e-58
1nxc_A 478 Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; 6e-24
1nxc_A478 Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; 2e-20
1x9d_A538 Endoplasmic reticulum mannosyl-oligosaccharide 1, 1e-51
1x9d_A538 Endoplasmic reticulum mannosyl-oligosaccharide 1, 1e-21
1x9d_A 538 Endoplasmic reticulum mannosyl-oligosaccharide 1, 2e-21
1hcu_A 503 Alpha-1,2-mannosidase; glycosylation, glycosyl hyd 4e-51
1hcu_A 503 Alpha-1,2-mannosidase; glycosylation, glycosyl hyd 3e-21
1hcu_A503 Alpha-1,2-mannosidase; glycosylation, glycosyl hyd 2e-17
2ri9_A475 Mannosyl-oligosaccharide alpha-1,2-mannosidase; al 6e-49
2ri9_A 475 Mannosyl-oligosaccharide alpha-1,2-mannosidase; al 2e-18
2ri9_A475 Mannosyl-oligosaccharide alpha-1,2-mannosidase; al 7e-17
1dl2_A 511 Class I alpha-1,2-mannosidase; alpha-alpha helix b 3e-47
1dl2_A 511 Class I alpha-1,2-mannosidase; alpha-alpha helix b 4e-20
1dl2_A511 Class I alpha-1,2-mannosidase; alpha-alpha helix b 2e-16
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1 Length = 478 Back     alignment and structure
 Score =  193 bits (493), Expect = 1e-58
 Identities = 94/185 (50%), Positives = 136/185 (73%), Gaps = 7/185 (3%)

Query: 6   ELSVFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDS 65
           E+SVFE  IRF+G +L+ Y  +G+ ++R KAV +  K+LPAF TP+GIP AL+N+ +G  
Sbjct: 100 EVSVFEVNIRFVGGLLSAYYLSGEEIFRKKAVELGVKLLPAFHTPSGIPWALLNMKSGIG 159

Query: 66  KNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYL 125
           +N+ WASG +SIL+E GTLHLEF++LS ++G+P++ EKV KIR+V++ ++KP GLYPNYL
Sbjct: 160 RNWPWASGGSSILAEFGTLHLEFMHLSHLSGDPVFAEKVMKIRTVLNKLDKPEGLYPNYL 219

Query: 126 NPKTGHWGQSHISMGALGDSFYEYLLKAWIQSNKEDTEGPESFKFTDTLEAKAYRSQDKY 185
           NP +G WGQ H+S+G LGDSFYEYLLKAW+ S+K D E  + +         A ++ + +
Sbjct: 220 NPSSGQWGQHHVSVGGLGDSFYEYLLKAWLMSDKTDLEAKKMYF-------DAVQAIETH 272

Query: 186 YILRP 190
            I + 
Sbjct: 273 LIRKS 277
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1 Length = 478 Back     alignment and structure
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1 Length = 478 Back     alignment and structure
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538 Back     alignment and structure
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538 Back     alignment and structure
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538 Back     alignment and structure
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1 Length = 503 Back     alignment and structure
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1 Length = 503 Back     alignment and structure
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1 Length = 503 Back     alignment and structure
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative conformations, modulation of activity, glycoprot glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A {Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A* 1kkt_A* 1kre_A* 1krf_A* Length = 475 Back     alignment and structure
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative conformations, modulation of activity, glycoprot glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A {Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A* 1kkt_A* 1kre_A* 1krf_A* Length = 475 Back     alignment and structure
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative conformations, modulation of activity, glycoprot glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A {Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A* 1kkt_A* 1kre_A* 1krf_A* Length = 475 Back     alignment and structure
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A* Length = 511 Back     alignment and structure
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A* Length = 511 Back     alignment and structure
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A* Length = 511 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query297
1nxc_A478 Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; 100.0
1x9d_A538 Endoplasmic reticulum mannosyl-oligosaccharide 1, 100.0
2ri9_A475 Mannosyl-oligosaccharide alpha-1,2-mannosidase; al 100.0
1hcu_A503 Alpha-1,2-mannosidase; glycosylation, glycosyl hyd 100.0
1dl2_A511 Class I alpha-1,2-mannosidase; alpha-alpha helix b 100.0
1nxc_A 478 Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; 99.6
1dl2_A 511 Class I alpha-1,2-mannosidase; alpha-alpha helix b 99.55
1hcu_A 503 Alpha-1,2-mannosidase; glycosylation, glycosyl hyd 99.55
2ri9_A 475 Mannosyl-oligosaccharide alpha-1,2-mannosidase; al 99.53
1x9d_A 538 Endoplasmic reticulum mannosyl-oligosaccharide 1, 99.52
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 97.92
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 97.76
3gt5_A402 N-acetylglucosamine 2-epimerase; structural genomi 97.56
2zbl_A421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 97.44
3pmm_A 382 Putative cytoplasmic protein; structural genomics, 97.18
1nc5_A 373 Hypothetical protein YTER; structural genomics, he 97.12
3gt5_A402 N-acetylglucosamine 2-epimerase; structural genomi 97.04
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 97.0
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 96.87
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 96.46
1nc5_A373 Hypothetical protein YTER; structural genomics, he 96.34
3pmm_A382 Putative cytoplasmic protein; structural genomics, 96.01
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 95.73
3k11_A 445 Putative glycosyl hydrolase; structural genomics, 95.73
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 95.54
2v8i_A 543 Pectate lyase; periplasm, beta-elimination, pectin 91.57
3k11_A445 Putative glycosyl hydrolase; structural genomics, 91.07
2zbl_A 421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 89.43
1fp3_A402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 87.71
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 86.61
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1 Back     alignment and structure
Probab=100.00  E-value=1.2e-90  Score=681.53  Aligned_cols=276  Identities=49%  Similarity=0.933  Sum_probs=256.6

Q ss_pred             CcCcccCccchhhhhhhhhhhhhccCCCchHHHHHHHHHHHHhcccCCCCCCcccceeecCCCCCCCCcCCCCcceeccc
Q psy7224           2 KQKIELSVFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWASGSASILSEL   81 (297)
Q Consensus         2 ~~~~~vsvFEttIR~LGGLLSAy~Ls~d~~lL~kA~~lad~Ll~AF~tp~giP~~~vn~~~g~~~~~~~~~~~~~~lAe~   81 (297)
                      +++..|||||||||+||||||||+||+|++||+||+||||+|+||||||||||+++||+++|...+++|...+++++||+
T Consensus        96 ~~~~~vsvFETtIR~LGGLLSAy~Lsgd~~lL~kA~dLad~LlpAFdTptgiP~~~vnl~~g~~~~~~~~~~~~s~lAe~  175 (478)
T 1nxc_A           96 NVNAEVSVFEVNIRFVGGLLSAYYLSGEEIFRKKAVELGVKLLPAFHTPSGIPWALLNMKSGIGRNWPWASGGSSILAEF  175 (478)
T ss_dssp             CCSSEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHGGGGCSSSSCCCSEEETTTCCEECCTTSGGGCEEHHHH
T ss_pred             cCCCccchhheehhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccccCCCCcccCCCCcccccc
Confidence            35789999999999999999999999999999999999999999999999999999999999887777765567899999


Q ss_pred             ccceeehhhhHhhhCChhhHHHHHHHHHHHHhcCCCCCCCCccccCCCCccccceeeecCCchhHHHHHHHHHHhhCCCC
Q psy7224          82 GTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYLNPKTGHWGQSHISMGALGDSFYEYLLKAWIQSNKED  161 (297)
Q Consensus        82 gs~~LEf~~LS~lTgd~~y~~~a~~~~~~l~~~~~~~gL~p~~i~~~~g~~~~~~~~~Ga~~DS~yEYLlK~~~l~g~~~  161 (297)
                      ||++|||++||++||||+|+++|++++++|++.++.+||+|+.||+.+|+|.+..+++||++|||||||+|+|+|+|+++
T Consensus       176 gsl~LEF~~LS~lTGd~~Y~~~a~~~~~~l~~~~~~~GL~p~~i~~~tg~~~~~~~~~Ga~~DS~YEYLlK~~il~g~~d  255 (478)
T 1nxc_A          176 GTLHLEFMHLSHLSGDPVFAEKVMKIRTVLNKLDKPEGLYPNYLNPSSGQWGQHHVSVGGLGDSFYEYLLKAWLMSDKTD  255 (478)
T ss_dssp             TTCHHHHHHHHHHHCCTHHHHHHHHHHHHHHHSCCGGGCCCSEECTTTCCBCSCEECSSTTTHHHHHHHHHHHHHTTTCC
T ss_pred             cchhhhHHHHHHHHCChHHHHHHHHHHHHHHhcCCCCCccccccCCCCCCccCceeeecCCCchHHHHHHHHHHHcCCch
Confidence            99999999999999999999999999999999888899999999999999999999999999999999999999999775


Q ss_pred             CC------------------------------------------------------------------------------
Q psy7224         162 TE------------------------------------------------------------------------------  163 (297)
Q Consensus       162 ~~------------------------------------------------------------------------------  163 (297)
                      ..                                                                              
T Consensus       256 ~~~~~m~~~a~~~i~~~l~~~~~~~~~~v~~~~~~~~~~~~~hL~cF~gG~~aLg~~~~~~~~~~~~l~~a~~l~~tC~~  335 (478)
T 1nxc_A          256 LEAKKMYFDAVQAIETHLIRKSSGGLTYIAEWKGGLLEHKMGHLTCFAGGMFALGADGAPEARAQHYLELGAEIARTCHE  335 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHTEEECTTSCEEECEEETTEEECEEETGGGGHHHHHHHTSTTSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCcEEEEeccCCcccccccchhhhhHHHHHhccccccccchHHHHHHHHHHHHHHHH
Confidence            42                                                                              


Q ss_pred             ---------CCccccccchhhhhhhcccccccCCChhhhhhhhhhhhhcCCCCchhhhHHHHHHHHHhhccccccccccc
Q psy7224         164 ---------GPESFKFTDTLEAKAYRSQDKYYILRPEVIESYFYLWRVTKDPKYREWGWDYVQMMKHAWDNYVTYAWGKN  234 (297)
Q Consensus       164 ---------~PE~~~~~~~~~~~~~~~~~~~y~lRPE~iES~fyl~r~T~d~~yre~~w~i~~a~~~~~~~y~gya~~~D  234 (297)
                               +||+|.|..+.+...++..+++|+||||+|||+|||||+||||+||+|||+||++|+++||+.+|||++.|
T Consensus       336 ~y~~~~tgl~PE~~~~~~~~~~~~~~~~~~~y~LRPE~iES~fylyR~TgD~~yre~gw~~f~ai~k~~r~~~G~a~i~d  415 (478)
T 1nxc_A          336 SYNRTYVKLGPEAFRFDGGVEAIATRQNEKYYILRPEVIETYMYMWRLTHDPKYRTWAWEAVEALESHCRVNGGYSGLRD  415 (478)
T ss_dssp             HHHTSSSSSCCSEEESSTTCSSBCCSGGGCCBCSCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTEETTEECCBSC
T ss_pred             HHHhcccCCCCeEEEeccCcccccccccccccCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence                     68888887665444456678899999999999999999999999999999999999999999999999999


Q ss_pred             cccCC-CCCCCCCCCCCCCcchhhHHhhhhHHHHhcCccccccccccccccc
Q psy7224         235 ELKPL-SRRGHSGSIFGSAELGMTIIDGLDTLYIMGLTDEYEDGKKWVAESL  285 (297)
Q Consensus       235 v~~p~-s~~d~~~Sf~~~~~~~~tl~eTLkyLyLmf~~~e~~~~~~~V~nt~  285 (297)
                      |..+. .+.|+|||||        |+||||||||+|++++++++++|||||.
T Consensus       416 V~~~~~~~~D~meSF~--------laETLKYlYLLFsd~~~i~ld~~VFnTE  459 (478)
T 1nxc_A          416 VYIARESYDDVQQSFF--------LAETLKYLYLIFSDDDLLPLEHWIFNTE  459 (478)
T ss_dssp             TTSSSCCBCCCBCHHH--------HHTHHHHHHHHTSCTTSSCTTTEEECTT
T ss_pred             cCCCCCCcCCCCCchH--------HHHHHHHHHeeccCCccCCCCCeeecCC
Confidence            99754 4459999999        9999999999999999999999999997
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Back     alignment and structure
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative conformations, modulation of activity, glycoprot glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A {Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A* 1kkt_A* 1kre_A* 1krf_A* Back     alignment and structure
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1 Back     alignment and structure
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A* Back     alignment and structure
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1 Back     alignment and structure
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A* Back     alignment and structure
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1 Back     alignment and structure
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative conformations, modulation of activity, glycoprot glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A {Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A* 1kkt_A* 1kre_A* 1krf_A* Back     alignment and structure
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>2v8i_A Pectate lyase; periplasm, beta-elimination, pectin degradation; 1.50A {Yersinia enterocolitica} PDB: 2v8k_A* 2v8j_A Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 297
d1nxca_467 a.102.2.1 (A:) Class I alpha-1;2-mannosidase, cata 8e-53
d1nxca_ 467 a.102.2.1 (A:) Class I alpha-1;2-mannosidase, cata 3e-25
d1nxca_467 a.102.2.1 (A:) Class I alpha-1;2-mannosidase, cata 8e-18
d1x9da1453 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidas 3e-43
d1x9da1 453 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidas 2e-21
d1x9da1453 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidas 2e-20
d1dl2a_ 511 a.102.2.1 (A:) Class I alpha-1;2-mannosidase, cata 1e-41
d1dl2a_ 511 a.102.2.1 (A:) Class I alpha-1;2-mannosidase, cata 6e-20
d1dl2a_511 a.102.2.1 (A:) Class I alpha-1;2-mannosidase, cata 2e-15
d2ri9a1475 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosid 1e-39
d2ri9a1 475 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosid 2e-20
d2ri9a1475 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosid 5e-16
d1hcua_ 488 a.102.2.1 (A:) Class I alpha-1;2-mannosidase, cata 1e-39
d1hcua_ 488 a.102.2.1 (A:) Class I alpha-1;2-mannosidase, cata 9e-21
d1hcua_488 a.102.2.1 (A:) Class I alpha-1;2-mannosidase, cata 2e-18
d2d5ja1377 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrola 3e-08
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 467 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Seven-hairpin glycosidases
family: Class I alpha-1;2-mannosidase, catalytic domain
domain: Class I alpha-1;2-mannosidase, catalytic domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  177 bits (449), Expect = 8e-53
 Identities = 96/200 (48%), Positives = 140/200 (70%), Gaps = 7/200 (3%)

Query: 2   KQKIELSVFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVY 61
               E+SVFE  IRF+G +L+ Y  +G+ ++R KAV +  K+LPAF TP+GIP AL+N+ 
Sbjct: 96  NVNAEVSVFEVNIRFVGGLLSAYYLSGEEIFRKKAVELGVKLLPAFHTPSGIPWALLNMK 155

Query: 62  TGDSKNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLY 121
           +G  +N+ WASG +SIL+E GTLHLEF++LS ++G+P++ EKV KIR+V++ ++KP GLY
Sbjct: 156 SGIGRNWPWASGGSSILAEFGTLHLEFMHLSHLSGDPVFAEKVMKIRTVLNKLDKPEGLY 215

Query: 122 PNYLNPKTGHWGQSHISMGALGDSFYEYLLKAWIQSNKEDTEGPESFKFTDTLEAKAYRS 181
           PNYLNP +G WGQ H+S+G LGDSFYEYLLKAW+ S+K D E  + +         A ++
Sbjct: 216 PNYLNPSSGQWGQHHVSVGGLGDSFYEYLLKAWLMSDKTDLEAKKMYF-------DAVQA 268

Query: 182 QDKYYILRPEVIESYFYLWR 201
            + + I +     +Y   W+
Sbjct: 269 IETHLIRKSSGGLTYIAEWK 288
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 467 Back     information, alignment and structure
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 467 Back     information, alignment and structure
>d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 453 Back     information, alignment and structure
>d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 453 Back     information, alignment and structure
>d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 453 Back     information, alignment and structure
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 511 Back     information, alignment and structure
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 511 Back     information, alignment and structure
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 511 Back     information, alignment and structure
>d2ri9a1 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosidase, catalytic domain {Fungus (Penicillium citrinum) [TaxId: 5077]} Length = 475 Back     information, alignment and structure
>d2ri9a1 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosidase, catalytic domain {Fungus (Penicillium citrinum) [TaxId: 5077]} Length = 475 Back     information, alignment and structure
>d2ri9a1 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosidase, catalytic domain {Fungus (Penicillium citrinum) [TaxId: 5077]} Length = 475 Back     information, alignment and structure
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Trichoderma reesei [TaxId: 51453]} Length = 488 Back     information, alignment and structure
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Trichoderma reesei [TaxId: 51453]} Length = 488 Back     information, alignment and structure
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Trichoderma reesei [TaxId: 51453]} Length = 488 Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Length = 377 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query297
d1nxca_467 Class I alpha-1;2-mannosidase, catalytic domain {M 100.0
d1x9da1453 Class I alpha-1;2-mannosidase, catalytic domain {H 100.0
d1hcua_488 Class I alpha-1;2-mannosidase, catalytic domain {T 100.0
d2ri9a1475 Class I alpha-1;2-mannosidase, catalytic domain {F 100.0
d1dl2a_511 Class I alpha-1;2-mannosidase, catalytic domain {B 100.0
d1nxca_ 467 Class I alpha-1;2-mannosidase, catalytic domain {M 99.6
d1hcua_ 488 Class I alpha-1;2-mannosidase, catalytic domain {T 99.46
d1dl2a_ 511 Class I alpha-1;2-mannosidase, catalytic domain {B 99.46
d1x9da1 453 Class I alpha-1;2-mannosidase, catalytic domain {H 99.44
d2ri9a1 475 Class I alpha-1;2-mannosidase, catalytic domain {F 99.39
d2d5ja1377 Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 98.45
d1nc5a_ 363 Hypothetical protein YteR {Bacillus subtilis [TaxI 97.61
d2d5ja1 377 Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 96.92
d2afaa1411 Putative NAG isomerase YihS {Salmonella typhimuriu 95.65
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 91.88
d1fp3a_402 N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) 91.07
d2afaa1411 Putative NAG isomerase YihS {Salmonella typhimuriu 89.63
d1fp3a_402 N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) 84.9
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Seven-hairpin glycosidases
family: Class I alpha-1;2-mannosidase, catalytic domain
domain: Class I alpha-1;2-mannosidase, catalytic domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-85  Score=643.62  Aligned_cols=276  Identities=48%  Similarity=0.932  Sum_probs=255.4

Q ss_pred             CcCcccCccchhhhhhhhhhhhhccCCCchHHHHHHHHHHHHhcccCCCCCCcccceeecCCCCCCCCcCCCCcceeccc
Q psy7224           2 KQKIELSVFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWASGSASILSEL   81 (297)
Q Consensus         2 ~~~~~vsvFEttIR~LGGLLSAy~Ls~d~~lL~kA~~lad~Ll~AF~tp~giP~~~vn~~~g~~~~~~~~~~~~~~lAe~   81 (297)
                      ++++.|||||||||+||||||||+||+|++||+||+||||+|+||||||+|||+++||+++|...+..|...+.+++||+
T Consensus        96 ~~~~~v~vFEt~iR~LGGLlsAy~Ls~d~~~L~kA~~l~~~Ll~aFdtptgiP~~~vn~~~g~~~~~~~~~~~~~~lAe~  175 (467)
T d1nxca_          96 NVNAEVSVFEVNIRFVGGLLSAYYLSGEEIFRKKAVELGVKLLPAFHTPSGIPWALLNMKSGIGRNWPWASGGSSILAEF  175 (467)
T ss_dssp             CCSSEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHGGGGCSSSSCCCSEEETTTCCEECCTTSGGGCEEHHHH
T ss_pred             CCCCccchhhhhhHhhhhHHHHHHhcCCHHHHHHHHHHHHHHHHhhCCCCCCCCcccccccCcCCCCCccCCCccchhhh
Confidence            46789999999999999999999999999999999999999999999999999999999999877777765678999999


Q ss_pred             ccceeehhhhHhhhCChhhHHHHHHHHHHHHhcCCCCCCCCccccCCCCccccceeeecCCchhHHHHHHHHHHhhCCCC
Q psy7224          82 GTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYLNPKTGHWGQSHISMGALGDSFYEYLLKAWIQSNKED  161 (297)
Q Consensus        82 gs~~LEf~~LS~lTgd~~y~~~a~~~~~~l~~~~~~~gL~p~~i~~~~g~~~~~~~~~Ga~~DS~yEYLlK~~~l~g~~~  161 (297)
                      ||++|||++||++|||++|+++|+++++.|++.++.+||+|++||+.+|+|.+..+++||++|||||||+|.|+|+|+.+
T Consensus       176 gsl~LEf~~Ls~lTGd~~Y~~~a~r~~~~l~~~~~~~GL~p~~id~~tg~~~~~~~~iGa~~DS~YEYLlK~~il~g~~d  255 (467)
T d1nxca_         176 GTLHLEFMHLSHLSGDPVFAEKVMKIRTVLNKLDKPEGLYPNYLNPSSGQWGQHHVSVGGLGDSFYEYLLKAWLMSDKTD  255 (467)
T ss_dssp             TTCHHHHHHHHHHHCCTHHHHHHHHHHHHHHHSCCGGGCCCSEECTTTCCBCSCEECSSTTTHHHHHHHHHHHHHTTTCC
T ss_pred             cccchhHHHHHHHHCCHHHHHHHHHHHHHHHhhcCCcccCCceeeCCCCcccCcccccCccchHHHHHHHHHHHhcCCcc
Confidence            99999999999999999999999999999999888899999999999999999999999999999999999999999877


Q ss_pred             CC------------------------------------------------------------------------------
Q psy7224         162 TE------------------------------------------------------------------------------  163 (297)
Q Consensus       162 ~~------------------------------------------------------------------------------  163 (297)
                      ..                                                                              
T Consensus       256 ~~~~~~~~~a~~~i~~~l~~~~~~~~~~v~~~~~~~~~~~~~hL~cF~~Gll~Lg~~~~~~~~~~~~~~la~~l~~~c~~  335 (467)
T d1nxca_         256 LEAKKMYFDAVQAIETHLIRKSSGGLTYIAEWKGGLLEHKMGHLTCFAGGMFALGADGAPEARAQHYLELGAEIARTCHE  335 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHTEEECTTSCEEECEEETTEEECEEETGGGGHHHHHHHTSTTSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCceeeeccCCCccccchhhHHHHHhHHHHhccccccchhhhHHHHHHHHHHHHHHH
Confidence            53                                                                              


Q ss_pred             ---------CCccccccchhhhhhhcccccccCCChhhhhhhhhhhhhcCCCCchhhhHHHHHHHHHhhccccccccccc
Q psy7224         164 ---------GPESFKFTDTLEAKAYRSQDKYYILRPEVIESYFYLWRVTKDPKYREWGWDYVQMMKHAWDNYVTYAWGKN  234 (297)
Q Consensus       164 ---------~PE~~~~~~~~~~~~~~~~~~~y~lRPE~iES~fyl~r~T~d~~yre~~w~i~~a~~~~~~~y~gya~~~D  234 (297)
                               +||.+.|+.+.+....+..+++|+||||+|||+|||||+||||+||+|||+||++|+++|++.+|||++.|
T Consensus       336 ~y~~~~tgl~pe~~~~~~~~~~~~~~~~~~~y~LRPE~IES~fyLyR~TgD~~yre~gw~~f~~i~~~~~~~~G~a~i~d  415 (467)
T d1nxca_         336 SYNRTYVKLGPEAFRFDGGVEAIATRQNEKYYILRPEVIETYMYMWRLTHDPKYRTWAWEAVEALESHCRVNGGYSGLRD  415 (467)
T ss_dssp             HHHTSSSSSCCSEEESSTTCSSBCCSGGGCCBCSCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTEETTEECCBSC
T ss_pred             HHHhhhhhcCCCceeecCCCcccccccCcccccCCcchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHccCccccccee
Confidence                     56766666544433345567899999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCC-CCCCCCCCCCCcchhhHHhhhhHHHHhcCccccccccccccccc
Q psy7224         235 ELKPLSR-RGHSGSIFGSAELGMTIIDGLDTLYIMGLTDEYEDGKKWVAESL  285 (297)
Q Consensus       235 v~~p~s~-~d~~~Sf~~~~~~~~tl~eTLkyLyLmf~~~e~~~~~~~V~nt~  285 (297)
                      |..+... .|+|||||        |+||||||||+|++++++++++|||||.
T Consensus       416 V~~~~~~~~D~meSF~--------laETLKYlYLlFsd~~~i~ld~~VfnTE  459 (467)
T d1nxca_         416 VYIARESYDDVQQSFF--------LAETLKYLYLIFSDDDLLPLEHWIFNTE  459 (467)
T ss_dssp             TTSSSCCBCCCBCHHH--------HHTHHHHHHHHTSCTTSSCTTTEEECTT
T ss_pred             ccCCCCCCCCCcccHH--------HHHHHHHHHHhcCCCCcCCccCEEEcCC
Confidence            9886544 49999999        9999999999999999999999999986
>d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Trichoderma reesei [TaxId: 51453]} Back     information, alignment and structure
>d2ri9a1 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosidase, catalytic domain {Fungus (Penicillium citrinum) [TaxId: 5077]} Back     information, alignment and structure
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Trichoderma reesei [TaxId: 51453]} Back     information, alignment and structure
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ri9a1 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosidase, catalytic domain {Fungus (Penicillium citrinum) [TaxId: 5077]} Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure