Psyllid ID: psy7344
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 240 | 2.2.26 [Sep-21-2011] | |||||||
| Q6P1R4 | 473 | tRNA-dihydrouridine(16/17 | yes | N/A | 0.45 | 0.228 | 0.380 | 3e-15 | |
| Q8C2P3 | 475 | tRNA-dihydrouridine(16/17 | yes | N/A | 0.45 | 0.227 | 0.373 | 7e-15 | |
| Q8K582 | 438 | tRNA-dihydrouridine(16/17 | yes | N/A | 0.45 | 0.246 | 0.365 | 4e-14 | |
| Q9HGN6 | 399 | tRNA-dihydrouridine(16/17 | yes | N/A | 0.233 | 0.140 | 0.482 | 2e-13 | |
| P53759 | 423 | tRNA-dihydrouridine(16/17 | yes | N/A | 0.275 | 0.156 | 0.463 | 7e-13 | |
| O95620 | 317 | tRNA-dihydrouridine(20a/2 | no | N/A | 0.270 | 0.205 | 0.388 | 2e-05 | |
| Q32M08 | 324 | tRNA-dihydrouridine(20a/2 | no | N/A | 0.270 | 0.200 | 0.402 | 7e-05 |
| >sp|Q6P1R4|DUS1L_HUMAN tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS1L PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 66/126 (52%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G L
Sbjct: 135 LAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAG---------CQLLTVHGRTKEQKGPL 185
Query: 233 DNTGSW 238
SW
Sbjct: 186 SGAASW 191
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Homo sapiens (taxid: 9606) EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: - |
| >sp|Q8C2P3|DUS1L_MOUSE tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Mus musculus GN=Dus1l PE=2 SV=1 | Back alignment and function description |
|---|
Score = 80.9 bits (198), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 67/126 (53%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G +
Sbjct: 135 LAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAG---------CQLLTVHGRTKEQKGPM 185
Query: 233 DNTGSW 238
T SW
Sbjct: 186 AGTASW 191
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|Q8K582|DUS1L_RAT tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Rattus norvegicus GN=Dus1l PE=2 SV=1 | Back alignment and function description |
|---|
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 66/126 (52%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRG YGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFLQEEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G +
Sbjct: 135 LAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAG---------CQLLTVHGRTKEQKGPM 185
Query: 233 DNTGSW 238
T SW
Sbjct: 186 AGTASW 191
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|Q9HGN6|DUS1_SCHPO tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dus1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 46/56 (82%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FCGND + + +AAK+A P+CD +D+N+GCPQ +AK+G YG++LQ++W L+ +++
Sbjct: 79 IQFCGNDPEIMLKAAKIAAPYCDAVDVNLGCPQGIAKKGKYGSFLQENWNLIESII 134
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 8 EC: 8 |
| >sp|P53759|DUS1_YEAST tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DUS1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + L AAKL E CD +D+N+GCPQ +AK+GHYG++L ++W L+ NL+ N
Sbjct: 91 VQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLI---N 147
Query: 179 MVHFVIAEP 187
+H + P
Sbjct: 148 TLHKNLKVP 156
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U16 and U17 in cytoplasmic tRNAs. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 8 EC: 8 |
| >sp|O95620|DUS4L_HUMAN tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Homo sapiens GN=DUS4L PE=2 SV=2 | Back alignment and function description |
|---|
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA++ P+ +GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKP 134
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 135 ELVQDMV 141
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|Q32M08|DUS4L_MOUSE tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Mus musculus GN=Dus4l PE=2 SV=1 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA L P+ +GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNQGDCPLIVQFAANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINKP 134
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 135 ELVHDMV 141
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 240 | ||||||
| 322780739 | 1167 | hypothetical protein SINV_07882 [Solenop | 0.2 | 0.041 | 0.714 | 1e-17 | |
| 307182359 | 468 | tRNA-dihydrouridine synthase 1-like [Cam | 0.466 | 0.239 | 0.459 | 1e-17 | |
| 328789228 | 478 | PREDICTED: tRNA-dihydrouridine synthase | 0.233 | 0.117 | 0.672 | 3e-16 | |
| 380019158 | 477 | PREDICTED: tRNA-dihydrouridine(16/17) sy | 0.233 | 0.117 | 0.672 | 3e-16 | |
| 307206649 | 304 | tRNA-dihydrouridine synthase 1-like [Har | 0.233 | 0.184 | 0.655 | 4e-16 | |
| 242003652 | 540 | tRNA-dihydrouridine synthase, putative [ | 0.233 | 0.103 | 0.642 | 4e-16 | |
| 443732865 | 463 | hypothetical protein CAPTEDRAFT_178407 [ | 0.354 | 0.183 | 0.4 | 5e-16 | |
| 196000454 | 427 | hypothetical protein TRIADDRAFT_21776 [T | 0.233 | 0.131 | 0.642 | 6e-16 | |
| 158296576 | 560 | AGAP008484-PA [Anopheles gambiae str. PE | 0.470 | 0.201 | 0.438 | 1e-15 | |
| 340716031 | 479 | PREDICTED: tRNA-dihydrouridine synthase | 0.233 | 0.116 | 0.655 | 2e-15 |
| >gi|322780739|gb|EFZ09996.1| hypothetical protein SINV_07882 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 40/56 (71%), Positives = 45/56 (80%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FCGND L EAA LAEP+CD IDINIGCPQ +AKRGHYGA+LQDDW LL +V
Sbjct: 784 VQFCGNDPDILLEAAHLAEPYCDAIDINIGCPQAIAKRGHYGAFLQDDWDLLKKIV 839
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307182359|gb|EFN69626.1| tRNA-dihydrouridine synthase 1-like [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 69/122 (56%), Gaps = 10/122 (8%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS-P 177
+ FCGND L EAA+LAEP+CD IDINIGCPQ +AKRGHYGA+LQDDW LL +V +
Sbjct: 82 VQFCGNDPDVLLEAARLAEPYCDAIDINIGCPQAIAKRGHYGAFLQDDWILLNRIVSTLK 141
Query: 178 NMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD-WPLLTELGKMAMLVGILDNTG 236
N +H + ++IN + Y LQD LLT G+ G L
Sbjct: 142 NGLHIPVTCKLRVFSEIN--------RTVEYARMLQDAGASLLTIHGRTREQKGSLTGLA 193
Query: 237 SW 238
SW
Sbjct: 194 SW 195
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328789228|ref|XP_623799.3| PREDICTED: tRNA-dihydrouridine synthase 1-like isoform 2 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 46/58 (79%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCGND L EAA LAEP+CD +DINIGCPQ +AKRGHYGA+LQDDW LL +V +
Sbjct: 89 VQFCGNDPSTLLEAALLAEPYCDAVDINIGCPQAIAKRGHYGAFLQDDWNLLQQIVST 146
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380019158|ref|XP_003693481.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 46/58 (79%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCGND L EAA LAEP+CD +DINIGCPQ +AKRGHYGA+LQDDW LL +V +
Sbjct: 88 VQFCGNDPSTLLEAALLAEPYCDAVDINIGCPQAIAKRGHYGAFLQDDWDLLQQIVST 145
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: |
| >gi|307206649|gb|EFN84621.1| tRNA-dihydrouridine synthase 1-like [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 48/58 (82%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCG+D + L EAA+LAEP+CD +DINIGCPQ +AKRGHYGA+LQDDW LL +V +
Sbjct: 88 VQFCGSDPEVLLEAARLAEPYCDAVDINIGCPQAIAKRGHYGAFLQDDWDLLQKIVST 145
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242003652|ref|XP_002422814.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis] gi|212505672|gb|EEB10076.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 48/56 (85%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FCGN+ ++ +AA+LAEP+CD +DIN+GCPQ +AKRGHYGA+LQDDWPLL +V
Sbjct: 71 VQFCGNEPDSILKAAQLAEPYCDAVDINLGCPQAIAKRGHYGAFLQDDWPLLKEIV 126
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|443732865|gb|ELU17429.1| hypothetical protein CAPTEDRAFT_178407 [Capitella teleta] | Back alignment and taxonomy information |
|---|
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 30/115 (26%)
Query: 60 PLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSL 119
P+F P+F+ + + R A ++D PL+ +
Sbjct: 58 PMFHAPVFVRD---------------ASYRREALATCEEDRPLIVQ-------------- 88
Query: 120 MFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
FC ND + L +AAK AEPHCD ID+N+GCPQM+AKRGHYGAYLQ++W LL +V
Sbjct: 89 -FCANDPEILLKAAKYAEPHCDAIDLNLGCPQMIAKRGHYGAYLQEEWDLLERMV 142
|
Source: Capitella teleta Species: Capitella teleta Genus: Capitella Family: Capitellidae Order: Capitellida Class: Polychaeta Phylum: Annelida Superkingdom: Eukaryota |
| >gi|196000454|ref|XP_002110095.1| hypothetical protein TRIADDRAFT_21776 [Trichoplax adhaerens] gi|190588219|gb|EDV28261.1| hypothetical protein TRIADDRAFT_21776 [Trichoplax adhaerens] | Back alignment and taxonomy information |
|---|
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FCGND L +AAK+ EPHCD +D+N+GCPQ +AKRGHYGA+LQDDW LL +V
Sbjct: 70 VQFCGNDPDTLLKAAKIVEPHCDAVDLNLGCPQAIAKRGHYGAFLQDDWKLLEKIV 125
|
Source: Trichoplax adhaerens Species: Trichoplax adhaerens Genus: Trichoplax Family: Order: Class: Phylum: Placozoa Superkingdom: Eukaryota |
| >gi|158296576|ref|XP_316960.4| AGAP008484-PA [Anopheles gambiae str. PEST] gi|157014776|gb|EAA12777.4| AGAP008484-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 68/121 (56%), Gaps = 8/121 (6%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FCGND K + EAA LA+ HCD IDIN+GCPQ +AKRGHYGA+LQD+W LL +V +
Sbjct: 100 IQFCGNDPKIMLEAALLAQDHCDAIDINLGCPQAIAKRGHYGAFLQDEWELLREIV---S 156
Query: 179 MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD-WPLLTELGKMAMLVGILDNTGS 237
+H +A P I + +AK Y LQD +LT G+ G L
Sbjct: 157 TLHRHLAIP----VTCKIRIFEDMAKTIRYARMLQDAGAQMLTVHGRTRDQKGPLTGLAD 212
Query: 238 W 238
W
Sbjct: 213 W 213
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340716031|ref|XP_003396507.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 45/58 (77%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCGND L EAA LAEP+CD +DINIGCPQ +AKRG YGA+LQDDW LL +V +
Sbjct: 90 VQFCGNDPNTLLEAALLAEPYCDAVDINIGCPQAIAKRGRYGAFLQDDWDLLRRIVST 147
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 240 | ||||||
| FB|FBgn0031238 | 505 | CG3645 [Drosophila melanogaste | 0.275 | 0.130 | 0.536 | 1.3e-17 | |
| UNIPROTKB|J3QLE4 | 309 | DUS1L "tRNA-dihydrouridine(16/ | 0.466 | 0.362 | 0.393 | 5.3e-17 | |
| UNIPROTKB|J3QQZ0 | 301 | DUS1L "tRNA-dihydrouridine(16/ | 0.466 | 0.372 | 0.393 | 5.3e-17 | |
| UNIPROTKB|Q6P1R4 | 473 | DUS1L "tRNA-dihydrouridine(16/ | 0.466 | 0.236 | 0.393 | 3e-16 | |
| UNIPROTKB|E2R9L8 | 475 | DUS1L "Uncharacterized protein | 0.466 | 0.235 | 0.393 | 3e-16 | |
| UNIPROTKB|J9NYR0 | 584 | DUS1L "Uncharacterized protein | 0.466 | 0.191 | 0.393 | 4.7e-16 | |
| UNIPROTKB|G3N340 | 475 | DUS1L "Uncharacterized protein | 0.466 | 0.235 | 0.401 | 5e-16 | |
| MGI|MGI:1915980 | 475 | Dus1l "dihydrouridine synthase | 0.466 | 0.235 | 0.385 | 8.2e-16 | |
| UNIPROTKB|E1BH75 | 270 | DUS1L "Uncharacterized protein | 0.466 | 0.414 | 0.385 | 1.6e-15 | |
| UNIPROTKB|E1C6D2 | 478 | DUS1L "Uncharacterized protein | 0.25 | 0.125 | 0.533 | 3.8e-15 |
| FB|FBgn0031238 CG3645 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 222 (83.2 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 37/69 (53%), Positives = 53/69 (76%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FCGND++ + +AA LA+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLT +V +
Sbjct: 87 IQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIV---S 143
Query: 179 MVHFVIAEP 187
+H +A P
Sbjct: 144 TLHAKLAVP 152
|
|
| UNIPROTKB|J3QLE4 DUS1L "tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 48/122 (39%), Positives = 68/122 (55%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTG 236
+ H ++ P C I + P+ + K Y L+ LLT G+ G L
Sbjct: 135 LAHEKLSVPVTCK---IRV-FPE-IDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAA 189
Query: 237 SW 238
SW
Sbjct: 190 SW 191
|
|
| UNIPROTKB|J3QQZ0 DUS1L "tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 48/122 (39%), Positives = 68/122 (55%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTG 236
+ H ++ P C I + P+ + K Y L+ LLT G+ G L
Sbjct: 135 LAHEKLSVPVTCK---IRV-FPE-IDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAA 189
Query: 237 SW 238
SW
Sbjct: 190 SW 191
|
|
| UNIPROTKB|Q6P1R4 DUS1L "tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 209 (78.6 bits), Expect = 3.0e-16, P = 3.0e-16
Identities = 48/122 (39%), Positives = 68/122 (55%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTG 236
+ H ++ P C I + P+ + K Y L+ LLT G+ G L
Sbjct: 135 LAHEKLSVPVTCK---IRV-FPE-IDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAA 189
Query: 237 SW 238
SW
Sbjct: 190 SW 191
|
|
| UNIPROTKB|E2R9L8 DUS1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 209 (78.6 bits), Expect = 3.0e-16, P = 3.0e-16
Identities = 48/122 (39%), Positives = 69/122 (56%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTG 236
+ H ++ P C I + P+ + K Y L+ LLT G+ G L T
Sbjct: 135 LAHEKLSVPVTCK---IRV-FPE-IDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLSGTA 189
Query: 237 SW 238
SW
Sbjct: 190 SW 191
|
|
| UNIPROTKB|J9NYR0 DUS1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 209 (78.6 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 48/122 (39%), Positives = 69/122 (56%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTG 236
+ H ++ P C I + P+ + K Y L+ LLT G+ G L T
Sbjct: 135 LAHEKLSVPVTCK---IRV-FPE-IDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLSGTA 189
Query: 237 SW 238
SW
Sbjct: 190 SW 191
|
|
| UNIPROTKB|G3N340 DUS1L "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 207 (77.9 bits), Expect = 5.0e-16, P = 5.0e-16
Identities = 49/122 (40%), Positives = 67/122 (54%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRM---RT 134
Query: 179 MVHFVIAEP-HCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTG 236
H V+ P C I + P+ + K Y L+ LLT G+ G L T
Sbjct: 135 WGHMVVGCPVTCK---IRV-FPE-IDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGTA 189
Query: 237 SW 238
SW
Sbjct: 190 SW 191
|
|
| MGI|MGI:1915980 Dus1l "dihydrouridine synthase 1-like (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 205 (77.2 bits), Expect = 8.2e-16, P = 8.2e-16
Identities = 47/122 (38%), Positives = 69/122 (56%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTG 236
+ H ++ P C I + P+ + K Y L+ LLT G+ G + T
Sbjct: 135 LAHERLSVPVTCK---IRV-FPE-IDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTA 189
Query: 237 SW 238
SW
Sbjct: 190 SW 191
|
|
| UNIPROTKB|E1BH75 DUS1L "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 47/122 (38%), Positives = 66/122 (54%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMSI--- 134
Query: 179 MVHFVIAEP-HCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTG 236
+ + P C I + P+ + K Y L+ LLT G+ G L T
Sbjct: 135 LAWTTSSXPVTCK---IRV-FPE-IDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGTA 189
Query: 237 SW 238
SW
Sbjct: 190 SW 191
|
|
| UNIPROTKB|E1C6D2 DUS1L "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 199 (75.1 bits), Expect = 3.8e-15, P = 3.8e-15
Identities = 32/60 (53%), Positives = 45/60 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++ N
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMILLAN 137
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 240 | |||
| cd02801 | 231 | cd02801, DUS_like_FMN, Dihydrouridine synthase-lik | 8e-16 | |
| pfam01207 | 309 | pfam01207, Dus, Dihydrouridine synthase (Dus) | 3e-11 | |
| cd02801 | 231 | cd02801, DUS_like_FMN, Dihydrouridine synthase-lik | 6e-10 | |
| cd02801 | 231 | cd02801, DUS_like_FMN, Dihydrouridine synthase-lik | 8e-10 | |
| COG0042 | 323 | COG0042, COG0042, tRNA-dihydrouridine synthase [Tr | 4e-09 | |
| cd02801 | 231 | cd02801, DUS_like_FMN, Dihydrouridine synthase-lik | 1e-07 | |
| COG0042 | 323 | COG0042, COG0042, tRNA-dihydrouridine synthase [Tr | 4e-05 | |
| pfam01207 | 309 | pfam01207, Dus, Dihydrouridine synthase (Dus) | 1e-04 | |
| pfam01207 | 309 | pfam01207, Dus, Dihydrouridine synthase (Dus) | 2e-04 | |
| COG0042 | 323 | COG0042, COG0042, tRNA-dihydrouridine synthase [Tr | 2e-04 | |
| PRK11815 | 333 | PRK11815, PRK11815, tRNA-dihydrouridine synthase A | 5e-04 |
| >gnl|CDD|239200 cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 8e-16
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 121 FCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
G+D + L EAAK+ E DGID+N+GCP +G GA L D L+ +V
Sbjct: 61 LGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIV 115
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. Length = 231 |
| >gnl|CDD|216365 pfam01207, Dus, Dihydrouridine synthase (Dus) | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-11
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 117 HSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
++ G+D L EAAKL D IDIN+GCP RG GA L D L+ +V
Sbjct: 56 LAVQLGGSDPALLAEAAKLVADLGADIIDINMGCPAKKVTRGGAGAALLRDPDLVAQIV 114
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria. Length = 309 |
| >gnl|CDD|239200 cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 6e-10
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 67 FIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+ E DGID+N+GCP +G GA L D L+ E+
Sbjct: 75 IVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEI 114
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. Length = 231 |
| >gnl|CDD|239200 cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 8e-10
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E DGID+N+GCP +G GA L D L+ E+V
Sbjct: 78 ELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIV 115
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. Length = 231 |
| >gnl|CDD|223120 COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 4e-09
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 104 TELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHC-DGIDINIGCPQMVAKRGHYGAY 162
L ++ G+D + L EAAK+AE D ID+N GCP +G GA
Sbjct: 56 FLLLLDELEEERPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAA 115
Query: 163 LQDDWPLLTNLV 174
L + LL +V
Sbjct: 116 LLKNPELLAEIV 127
|
Length = 323 |
| >gnl|CDD|239200 cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 1e-07
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
++ E DG D+N+GCP +G GA L D L+ E+
Sbjct: 75 IVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEI 114
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. Length = 231 |
| >gnl|CDD|223120 COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-05
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 16 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
D ID+N GCP +G GA L + LL E+V
Sbjct: 94 DIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIV 127
|
Length = 323 |
| >gnl|CDD|216365 pfam01207, Dus, Dihydrouridine synthase (Dus) | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 15 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
D IDIN+GCP RG GA L D L+ ++V
Sbjct: 80 ADIIDINMGCPAKKVTRGGAGAALLRDPDLVAQIV 114
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria. Length = 309 |
| >gnl|CDD|216365 pfam01207, Dus, Dihydrouridine synthase (Dus) | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 68 IAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 103
+ D IDIN+GCP RG GA L D L+
Sbjct: 74 LVADLGADIIDINMGCPAKKVTRGGAGAALLRDPDLV 110
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria. Length = 309 |
| >gnl|CDD|223120 COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 74 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
D ID+N GCP +G GA L + LL E+
Sbjct: 94 DIIDLNCGCPSPKVVKGGAGAALLKNPELLAEI 126
|
Length = 323 |
| >gnl|CDD|236991 PRK11815, PRK11815, tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 5e-04
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 123 GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYL 163
G+D +L EAAKLAE D I++N+GCP + G +GA L
Sbjct: 73 GSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACL 114
|
Length = 333 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 240 | |||
| KOG2335|consensus | 358 | 100.0 | ||
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 99.97 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 99.97 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 99.95 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 99.94 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 99.94 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 99.91 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 99.9 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 99.9 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 99.86 | |
| KOG2333|consensus | 614 | 99.86 | ||
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 99.86 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 99.85 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 99.85 | |
| KOG2335|consensus | 358 | 99.83 | ||
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 99.81 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 99.8 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 99.79 | |
| KOG2334|consensus | 477 | 99.75 | ||
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 99.75 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 99.7 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 99.67 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 99.66 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 99.65 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 99.63 | |
| KOG2333|consensus | 614 | 99.61 | ||
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 99.58 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 99.56 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 99.56 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 99.49 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 99.45 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 99.41 | |
| KOG2334|consensus | 477 | 99.39 | ||
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 99.38 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 99.35 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 99.34 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 99.31 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 99.29 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 99.28 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 99.2 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 99.14 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 99.07 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 98.99 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 98.95 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 98.94 | |
| PF01180 | 295 | DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP | 98.79 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 98.78 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 98.77 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 98.72 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 98.69 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 98.69 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 98.65 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 98.63 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 98.63 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 98.63 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 98.6 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 98.58 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 98.55 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 98.52 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 98.52 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 98.47 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 98.44 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 98.39 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 98.37 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 98.35 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 98.32 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 98.29 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 98.27 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 98.14 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 98.1 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 98.09 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 98.08 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 98.06 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 98.0 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 97.99 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 97.96 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 97.96 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 97.96 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 97.96 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 97.92 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 97.86 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 97.85 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 97.76 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 97.71 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.69 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 97.65 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 97.64 | |
| KOG1799|consensus | 471 | 97.62 | ||
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 97.62 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 97.62 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 97.61 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 97.59 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 97.58 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 97.54 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 97.44 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 97.3 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 97.24 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 97.22 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 97.21 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 97.14 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 97.11 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 97.1 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 97.08 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.93 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 96.9 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 96.77 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 96.76 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 96.76 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 96.41 | |
| PF01680 | 208 | SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p | 96.24 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 96.1 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 95.94 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 95.9 | |
| PF01180 | 295 | DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP | 95.84 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 95.75 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 95.69 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 95.68 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 95.66 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 95.62 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 95.58 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 95.48 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 95.43 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 95.3 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 95.27 | |
| COG0214 | 296 | SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta | 95.25 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 95.08 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 94.96 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 94.42 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 94.32 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 94.27 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 94.15 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 94.09 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 94.07 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 94.0 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 93.98 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 93.94 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 93.74 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 93.73 | |
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 93.56 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 93.56 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 93.44 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 93.44 | |
| KOG1606|consensus | 296 | 93.43 | ||
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 93.41 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 93.14 | |
| PRK08005 | 210 | epimerase; Validated | 93.12 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 93.01 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 92.84 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 92.79 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 92.74 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 92.6 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 92.54 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 92.5 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 92.29 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 92.14 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 91.86 | |
| KOG1436|consensus | 398 | 91.78 | ||
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 91.73 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 91.71 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 91.59 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 91.46 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 91.44 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 91.4 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 91.3 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 91.13 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 91.11 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 91.09 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 90.98 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 90.84 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 90.54 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 90.41 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 90.36 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 90.36 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 90.17 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 90.04 | |
| PLN02535 | 364 | glycolate oxidase | 89.87 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 89.87 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 89.76 | |
| PRK07535 | 261 | methyltetrahydrofolate:corrinoid/iron-sulfur prote | 89.75 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 89.71 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 89.67 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 89.62 | |
| PLN02979 | 366 | glycolate oxidase | 89.58 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 89.45 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 89.42 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 89.35 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 89.33 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 88.91 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 88.9 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 88.84 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 88.72 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 88.68 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 88.67 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 88.4 | |
| PRK14057 | 254 | epimerase; Provisional | 88.22 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 88.17 | |
| cd00740 | 252 | MeTr MeTr subgroup of pterin binding enzymes. This | 88.15 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 88.12 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 88.11 | |
| PRK11613 | 282 | folP dihydropteroate synthase; Provisional | 88.09 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 88.02 | |
| cd00953 | 279 | KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas | 88.0 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 87.98 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 87.97 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 87.96 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 87.95 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 87.93 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 87.85 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 87.82 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 87.81 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 87.72 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 87.65 | |
| COG0214 | 296 | SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta | 87.65 | |
| PRK00230 | 230 | orotidine 5'-phosphate decarboxylase; Reviewed | 87.64 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 87.48 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 87.47 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 87.38 | |
| PRK13306 | 216 | ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; | 87.26 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 87.23 | |
| TIGR00284 | 499 | dihydropteroate synthase-related protein. This pro | 87.14 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 86.95 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 86.89 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 86.7 | |
| PF00809 | 210 | Pterin_bind: Pterin binding enzyme This Prosite en | 86.61 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 86.41 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 86.39 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 86.05 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 85.89 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 85.88 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 85.87 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 85.54 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 85.34 | |
| KOG0538|consensus | 363 | 85.08 | ||
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 85.01 | |
| PRK13958 | 207 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 84.68 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 84.65 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 84.55 | |
| cd00423 | 258 | Pterin_binding Pterin binding enzymes. This family | 84.4 | |
| PF00215 | 226 | OMPdecase: Orotidine 5'-phosphate decarboxylase / | 84.19 | |
| PRK09206 | 470 | pyruvate kinase; Provisional | 84.15 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 84.11 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 83.98 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 83.89 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 83.55 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 83.19 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 83.01 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 82.49 | |
| KOG2550|consensus | 503 | 82.45 | ||
| PRK01060 | 281 | endonuclease IV; Provisional | 82.37 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 82.16 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 82.15 | |
| PRK06739 | 352 | pyruvate kinase; Validated | 81.63 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 81.61 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 81.58 | |
| PTZ00300 | 454 | pyruvate kinase; Provisional | 81.52 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 81.32 | |
| PF01487 | 224 | DHquinase_I: Type I 3-dehydroquinase; InterPro: IP | 81.28 | |
| PLN02765 | 526 | pyruvate kinase | 81.15 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 80.91 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 80.83 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 80.76 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 80.22 | |
| PRK01222 | 210 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 80.01 |
| >KOG2335|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=258.96 Aligned_cols=156 Identities=33% Similarity=0.537 Sum_probs=138.0
Q ss_pred cccCCCccccccCchhhhhhhhcccceeeeCChhhHHH-h----------hhcccCCCCceeEEeecCCHHHHHHHHHHH
Q psy7344 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTE-L----------GFKTRSHMCGHSLMFCGNDSKNLTEAAKLA 136 (240)
Q Consensus 68 ~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~-i----------~~~~~~~~~pvivqi~g~d~~~~~~aa~~l 136 (240)
++|||+++++++|| +++.+ ||+.+.. +|||.. . .+++++.+.|+|+||+|+|++.+.+||+++
T Consensus 22 i~APMvd~S~l~fR--~L~R~---y~~~l~y-TpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~~ndp~~ll~Aa~lv 95 (358)
T KOG2335|consen 22 IVAPMVDYSELAFR--RLVRL---YGADLLY-TPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFGGNDPENLLKAARLV 95 (358)
T ss_pred ccCCcccccHHHHH--HHHHH---hCCceEe-chHHHHHHHhcCccchhhhcccCCCCCceEEEEcCCCHHHHHHHHHHh
Confidence 78999999999998 55544 5665554 455442 1 245567789999999999999999999999
Q ss_pred ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee----hhcHHHHHHHH
Q psy7344 137 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM----VAKRGHYGAYL 212 (240)
Q Consensus 137 e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r----~~~~~~~~~~l 212 (240)
+..||+||||+|||+.++.++|||+.|+.+|+++.++++.++.. ++.|||+|+| .++|+++++++
T Consensus 96 ~~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~-----------l~~pVs~KIRI~~d~~kTvd~ak~~ 164 (358)
T KOG2335|consen 96 QPYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRAN-----------LNVPVSVKIRIFVDLEKTVDYAKML 164 (358)
T ss_pred hhhcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhh-----------cCCCeEEEEEecCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 7889999999 46799999999
Q ss_pred hC-CCCeEEEecccccccCCCCCCCCCCC
Q psy7344 213 QD-DWPLLTELGKMAMLVGILDNTGSWTP 240 (240)
Q Consensus 213 ~~-G~~~itih~R~~~~~~~~~~~adw~~ 240 (240)
++ |++++||||||+.|++..++++||++
T Consensus 165 e~aG~~~ltVHGRtr~~kg~~~~pad~~~ 193 (358)
T KOG2335|consen 165 EDAGVSLLTVHGRTREQKGLKTGPADWEA 193 (358)
T ss_pred HhCCCcEEEEecccHHhcCCCCCCcCHHH
Confidence 99 99999999999999998889999974
|
|
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=239.43 Aligned_cols=162 Identities=23% Similarity=0.235 Sum_probs=131.7
Q ss_pred ceeecccccccCCCccccccCchhhhhhhhcccceeeeCChhhHHHh---------h--hcccCCCCceeEEeecCCHHH
Q psy7344 60 PLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL---------G--FKTRSHMCGHSLMFCGNDSKN 128 (240)
Q Consensus 60 p~~vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~i---------~--~~~~~~~~pvivqi~g~d~~~ 128 (240)
+...+.+.++|||.+++|.+|| .+....|.+ .+.. +|+++.- . ....+.+.|+++||+|+||+.
T Consensus 6 ~~~~~~~~~lAPM~gvtd~~fR--~l~~~~ga~--~~~~-TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~gsdp~~ 80 (323)
T COG0042 6 LIELRNRVILAPMAGVTDLPFR--RLARELGAY--DLLY-TEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGGSDPEL 80 (323)
T ss_pred cccccCcEEEecCCCCccHHHH--HHHHHhCCC--ceEE-EccEEEhhhccCCcchhhhcCcCCCCCCEEEEecCCCHHH
Confidence 4445667899999999999998 555543443 2221 2333321 0 111123579999999999999
Q ss_pred HHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC-CeeeEEeee--hh-
Q psy7344 129 LTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN-DINIGCPQM--VA- 203 (240)
Q Consensus 129 ~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~-~~pvsvK~r--~~- 203 (240)
+.++++.+++ ++|+||||+|||++.+.++|.|++||.+|+++.+|+++++++ + ++|||||+| ++
T Consensus 81 l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~a-----------v~~iPVTVKiRlG~d~ 149 (323)
T COG0042 81 LAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEA-----------VGDIPVTVKIRLGWDD 149 (323)
T ss_pred HHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHh-----------hCCCCeEEEEecccCc
Confidence 9999999976 789999999999999999999999999999999999999999 6 599999999 32
Q ss_pred -c--HHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 204 -K--RGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 204 -~--~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
+ ..++++.+++ |+++|||||||+.|+| .+++||+
T Consensus 150 ~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y--~~~ad~~ 187 (323)
T COG0042 150 DDILALEIARILEDAGADALTVHGRTRAQGY--LGPADWD 187 (323)
T ss_pred ccccHHHHHHHHHhcCCCEEEEecccHHhcC--CCccCHH
Confidence 2 5789999999 9999999999999996 6889997
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-31 Score=235.79 Aligned_cols=154 Identities=21% Similarity=0.311 Sum_probs=108.8
Q ss_pred cccCCCccccccCchhhhhhhhcccceeeeCChhhHHH--h---------hhcccCCCCceeEEeecCCHHHHHHHHHHH
Q psy7344 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTE--L---------GFKTRSHMCGHSLMFCGNDSKNLTEAAKLA 136 (240)
Q Consensus 68 ~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~--i---------~~~~~~~~~pvivqi~g~d~~~~~~aa~~l 136 (240)
++|||++++|++|| ..+..+|..+.+. +|+++. + .....+.+.|+++||+|+|++.+.++++++
T Consensus 1 ~LAPM~g~td~~fR--~l~~~~g~~~~~~---temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~ 75 (309)
T PF01207_consen 1 ILAPMAGVTDLPFR--RLCREFGADDLTY---TEMISAKAILRSNKKTIRLLPFLPNERPLIVQLFGNDPEDLAEAAEIV 75 (309)
T ss_dssp -E---TTTSSHHHH--HHHHCCTSSSBEE----S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-HHHHHHHHHHH
T ss_pred CccCCCCCchHHHH--HHHHHHCCCeEEE---cCCEEECcccccccceeecccccccccceeEEEeeccHHHHHHHHHhh
Confidence 47999999999998 6665554432222 233321 1 111223347999999999999999999999
Q ss_pred cc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh--h----cHHHHH
Q psy7344 137 EP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV--A----KRGHYG 209 (240)
Q Consensus 137 e~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~--~----~~~~~~ 209 (240)
.+ ++|+||||+|||++.+.++|+|++||.||+.+.+|+++++++ +++|||+|+|+ + ++.+++
T Consensus 76 ~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~-----------~~~pvsvKiR~g~~~~~~~~~~~~ 144 (309)
T PF01207_consen 76 AELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKA-----------VPIPVSVKIRLGWDDSPEETIEFA 144 (309)
T ss_dssp CCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH------------SSEEEEEEESECT--CHHHHHHH
T ss_pred hccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcc-----------cccceEEecccccccchhHHHHHH
Confidence 88 899999999999999999999999999999999999999998 78999999993 2 479999
Q ss_pred HHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 210 AYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 210 ~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
+.+++ |+++|||||||+.|+| ++++||+
T Consensus 145 ~~l~~~G~~~i~vH~Rt~~q~~--~~~a~w~ 173 (309)
T PF01207_consen 145 RILEDAGVSAITVHGRTRKQRY--KGPADWE 173 (309)
T ss_dssp HHHHHTT--EEEEECS-TTCCC--TS---HH
T ss_pred HHhhhcccceEEEecCchhhcC--CcccchH
Confidence 99999 9999999999999995 7899997
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-28 Score=217.78 Aligned_cols=155 Identities=18% Similarity=0.233 Sum_probs=122.0
Q ss_pred ccccCCCccccccCchhhhhhhhcccceeee---CChhhHHH---hhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-C
Q psy7344 67 FIAEPHCDGIDINIGCPQMVAKRGHYGAYLQ---DDWPLLTE---LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-H 139 (240)
Q Consensus 67 ~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~---~d~eli~~---i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~ 139 (240)
.++|||++++|++|| .++..+|..+.+.+ ....++.. -.....+.+.|+++||+|+|++++.++++.+++ +
T Consensus 3 ~~lAPM~g~Td~~fR--~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g 80 (318)
T TIGR00742 3 FSVAPMLDWTDRHFR--YFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLGGSDPNDLAKCAKIAEKRG 80 (318)
T ss_pred EEEECCCCCcCHHHH--HHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEccCCHHHHHHHHHHHHhCC
Confidence 478999999999998 55555443222111 01122211 122233456899999999999999999999976 7
Q ss_pred CCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh--------hcHHHHHHH
Q psy7344 140 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV--------AKRGHYGAY 211 (240)
Q Consensus 140 ~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~--------~~~~~~~~~ 211 (240)
+|+||||+|||++.+.++++|++|+.+|+++.+|+++++++ .++|||||+|+ +++.++++.
T Consensus 81 ~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~-----------~~~PVsvKiR~g~~~~~~~~~~~~~~~~ 149 (318)
T TIGR00742 81 YDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEA-----------VNIPVTVKHRIGIDPLDSYEFLCDFVEI 149 (318)
T ss_pred CCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHH-----------hCCCeEEEEecCCCCcchHHHHHHHHHH
Confidence 99999999999999899999999999999999999999998 68899999994 245688999
Q ss_pred HhC-CCCeEEEecccc-cccCCCCCCC
Q psy7344 212 LQD-DWPLLTELGKMA-MLVGILDNTG 236 (240)
Q Consensus 212 l~~-G~~~itih~R~~-~~~~~~~~~a 236 (240)
+++ |+++|+||+||+ .|. |++.+
T Consensus 150 l~~~G~~~itvHgRt~~~qg--~sg~~ 174 (318)
T TIGR00742 150 VSGKGCQNFIVHARKAWLSG--LSPKE 174 (318)
T ss_pred HHHcCCCEEEEeCCchhhcC--CCccc
Confidence 999 999999999998 444 45544
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-27 Score=210.18 Aligned_cols=157 Identities=16% Similarity=0.141 Sum_probs=125.2
Q ss_pred ccccCCCccccccCchhhhhhhhcccceeeeCChhhHHH------------hhh--c---ccCCCCceeEEeecCCHHHH
Q psy7344 67 FIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTE------------LGF--K---TRSHMCGHSLMFCGNDSKNL 129 (240)
Q Consensus 67 ~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~------------i~~--~---~~~~~~pvivqi~g~d~~~~ 129 (240)
.++|||++++|.+|| ..+..+|+.+.+. +|+++. +.. . ..+.+.|+++||+|+|++++
T Consensus 3 ~~lAPMag~td~~fR--~l~~~~g~~~~~~---temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g~~p~~~ 77 (312)
T PRK10550 3 VLLAPMEGVLDSLVR--ELLTEVNDYDLCI---TEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLGQYPQWL 77 (312)
T ss_pred eEEECCCCCcCHHHH--HHHHHhCCCCEEE---eCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEeccCCHHHH
Confidence 578999999999998 5556555322222 122221 110 0 22345799999999999999
Q ss_pred HHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh-----h
Q psy7344 130 TEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV-----A 203 (240)
Q Consensus 130 ~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~-----~ 203 (240)
.++|+.+++ ++|+||||+|||++.+.+.|.|++|+.+|+.+.+|++++++.+ +.++|||+|+|+ +
T Consensus 78 ~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~---------~~~~pVsvKiR~g~~~~~ 148 (312)
T PRK10550 78 AENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAV---------PAHLPVTVKVRLGWDSGE 148 (312)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhc---------CCCcceEEEEECCCCCch
Confidence 999998865 8999999999999999999999999999999999999999972 015899999993 2
Q ss_pred cHHHHHHHHhC-CCCeEEEecccccccCCCCCCC-CCC
Q psy7344 204 KRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTG-SWT 239 (240)
Q Consensus 204 ~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~a-dw~ 239 (240)
.+.++++.+++ |+|.|+||+||+.|+| ++++ ||+
T Consensus 149 ~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y--~g~~~~~~ 184 (312)
T PRK10550 149 RKFEIADAVQQAGATELVVHGRTKEDGY--RAEHINWQ 184 (312)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCccCC--CCCcccHH
Confidence 47899999999 9999999999999974 6875 995
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-27 Score=210.32 Aligned_cols=158 Identities=19% Similarity=0.209 Sum_probs=126.7
Q ss_pred ecccccccCCCccccccCchhhhhhhhcccceeeeCChhhHHH-----------hhhcccCCCCceeEEeecCCHHHHHH
Q psy7344 63 MGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTE-----------LGFKTRSHMCGHSLMFCGNDSKNLTE 131 (240)
Q Consensus 63 vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~-----------i~~~~~~~~~pvivqi~g~d~~~~~~ 131 (240)
++.+.++|||++++|++|| ..+..+| +.+.. +|+++. ......+...|+++||+|+|++++.+
T Consensus 8 ~~~~~~lAPM~g~td~~fR--~l~~~~g---~~~~~-temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g~~~~~~~~ 81 (321)
T PRK10415 8 LRNRLIAAPMAGITDRPFR--TLCYEMG---AGLTV-SEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMAD 81 (321)
T ss_pred CCCCEEecCCCCCCcHHHH--HHHHHHC---CCEEE-EccEEcchhhhcCHhHHHHhccCccCCCEEEEEeCCCHHHHHH
Confidence 4456789999999999998 5555443 32211 122221 11111223468899999999999999
Q ss_pred HHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--hh----c
Q psy7344 132 AAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM--VA----K 204 (240)
Q Consensus 132 aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r--~~----~ 204 (240)
+++.+++ ++|+||||+|||++.+.+.|.|++|+.||+.+.+++++++++ +++||++|+| ++ +
T Consensus 82 aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a-----------~d~pv~vKiR~G~~~~~~~ 150 (321)
T PRK10415 82 AARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNA-----------VDVPVTLKIRTGWAPEHRN 150 (321)
T ss_pred HHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHh-----------cCCceEEEEEccccCCcch
Confidence 9998754 899999999999999899999999999999999999999988 7889999999 32 4
Q ss_pred HHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 205 RGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 205 ~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
+.++++.+++ |+++|++|+||+.|.| +|.+||+
T Consensus 151 ~~~~a~~le~~G~d~i~vh~rt~~~~~--~G~a~~~ 184 (321)
T PRK10415 151 CVEIAQLAEDCGIQALTIHGRTRACLF--NGEAEYD 184 (321)
T ss_pred HHHHHHHHHHhCCCEEEEecCcccccc--CCCcChH
Confidence 7899999999 9999999999999984 7999996
|
|
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-24 Score=194.23 Aligned_cols=150 Identities=20% Similarity=0.230 Sum_probs=118.6
Q ss_pred ccccccCCCccccccCchhhhhhhhcccc-eee--eCChhhHHH---hhhcccCCCCceeEEeecCCHHHHHHHHHHHcc
Q psy7344 65 PLFIAEPHCDGIDINIGCPQMVAKRGHYG-AYL--QDDWPLLTE---LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP 138 (240)
Q Consensus 65 ~~~~lap~~~~~dl~~gC~~~i~~~g~~g-a~l--~~d~eli~~---i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~ 138 (240)
.+.++|||++++|++|| ..+..+|... .|. .....++.. -.....+.+.|+++||+|+|++.+.++|+.+++
T Consensus 11 ~~~~lAPM~g~td~~fR--~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~ 88 (333)
T PRK11815 11 RRFSVAPMMDWTDRHCR--YFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLGGSDPADLAEAAKLAED 88 (333)
T ss_pred CCEEEeCCCCCcCHHHH--HHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEeCCCHHHHHHHHHHHHh
Confidence 35688999999999998 5555444311 222 011122221 112223456799999999999999999999876
Q ss_pred -CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh--------hcHHHHH
Q psy7344 139 -HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV--------AKRGHYG 209 (240)
Q Consensus 139 -~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~--------~~~~~~~ 209 (240)
|+|+||||+|||+....+.++|++|+.+|+.+.+|++++++. .++||++|+|+ .++.+++
T Consensus 89 ~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~-----------v~~pVsvKiR~g~~~~~t~~~~~~~~ 157 (333)
T PRK11815 89 WGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDA-----------VSIPVTVKHRIGIDDQDSYEFLCDFV 157 (333)
T ss_pred cCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHH-----------cCCceEEEEEeeeCCCcCHHHHHHHH
Confidence 799999999999998888999999999999999999999998 67899999993 2357899
Q ss_pred HHHhC-CCCeEEEeccccc
Q psy7344 210 AYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 210 ~~l~~-G~~~itih~R~~~ 227 (240)
+.+++ |+++|++|+||+.
T Consensus 158 ~~l~~aG~d~i~vh~Rt~~ 176 (333)
T PRK11815 158 DTVAEAGCDTFIVHARKAW 176 (333)
T ss_pred HHHHHhCCCEEEEcCCchh
Confidence 99999 9999999999984
|
|
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-25 Score=196.23 Aligned_cols=151 Identities=25% Similarity=0.288 Sum_probs=119.4
Q ss_pred cccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccC-CCceeecccccc-cCCCccccc-----cC
Q psy7344 8 RIETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSK-NGPLFMGPLFIA-EPHCDGIDI-----NI 80 (240)
Q Consensus 8 ~~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~-~~p~~vk~~~~l-ap~~~~~dl-----~~ 80 (240)
++..+.++|+||||||||++||+++++||+||++|+++.+||.+++ ++. +.|+|||.+.-. .+.....++ ..
T Consensus 86 ~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~-~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~ 164 (323)
T COG0042 86 KIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMV-EAVGDIPVTVKIRLGWDDDDILALEIARILEDA 164 (323)
T ss_pred HHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHH-HhhCCCCeEEEEecccCcccccHHHHHHHHHhc
Confidence 4567778999999999999999999999999999999999999999 577 499999965432 221111111 55
Q ss_pred chhhhhhhhccccee--e-eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhc
Q psy7344 81 GCPQMVAKRGHYGAY--L-QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKR 156 (240)
Q Consensus 81 gC~~~i~~~g~~ga~--l-~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~ 156 (240)
| .+.+++|||+... . ..+|+.|++++..+++ .|++.+ +|+.+..++.++++. |||+||+++|
T Consensus 165 g-~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~--ipvi~N---GdI~s~~~a~~~l~~tg~DgVMigRg-------- 230 (323)
T COG0042 165 G-ADALTVHGRTRAQGYLGPADWDYIKELKEAVPS--IPVIAN---GDIKSLEDAKEMLEYTGADGVMIGRG-------- 230 (323)
T ss_pred C-CCEEEEecccHHhcCCCccCHHHHHHHHHhCCC--CeEEeC---CCcCCHHHHHHHHHhhCCCEEEEcHH--------
Confidence 5 4788999999883 3 4689999999877643 566655 999999999999987 7999999999
Q ss_pred ccccccccCCHHHHHHHHHHhhhc
Q psy7344 157 GHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 157 ~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
.+.+|++++++ +.+..+
T Consensus 231 ------a~~nP~l~~~i-~~~~~g 247 (323)
T COG0042 231 ------ALGNPWLFRQI-DYLETG 247 (323)
T ss_pred ------HccCCcHHHHH-HHhhcC
Confidence 35799999888 544443
|
|
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-23 Score=187.97 Aligned_cols=161 Identities=20% Similarity=0.246 Sum_probs=128.2
Q ss_pred ecccccccCCCccccccCchhhhhhhhcccceeeeC---ChhhHHHh-----hhcccCCCCceeEEeecCCHHHHHHHHH
Q psy7344 63 MGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD---DWPLLTEL-----GFKTRSHMCGHSLMFCGNDSKNLTEAAK 134 (240)
Q Consensus 63 vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~---d~eli~~i-----~~~~~~~~~pvivqi~g~d~~~~~~aa~ 134 (240)
++.+.++|||++++|++|| .++..+| .+.+.+. ...++... .....+.+.|+++||+|++++++.++++
T Consensus 6 ~~~~l~lAPm~~~t~~~fR--~l~~~~g-~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~~~~~~~~aa~ 82 (319)
T TIGR00737 6 LKSRVVLAPMAGVTDSPFR--RLVAEYG-AGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGSDPDTMAEAAK 82 (319)
T ss_pred CCCCEEecCCCCCCcHHHH--HHHHHHC-CCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCCCHHHHHHHHH
Confidence 3456789999999999998 6666555 2332211 11121111 1122344689999999999999999999
Q ss_pred HHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh--h----cHHH
Q psy7344 135 LAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV--A----KRGH 207 (240)
Q Consensus 135 ~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~--~----~~~~ 207 (240)
.+++ |+|+||||+|||+....+++.|+.++.+|+.+.+|++++++. +++||++|+|. + ++.+
T Consensus 83 ~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~-----------~~~pv~vKir~g~~~~~~~~~~ 151 (319)
T TIGR00737 83 INEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDA-----------VDIPVTVKIRIGWDDAHINAVE 151 (319)
T ss_pred HHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhh-----------cCCCEEEEEEcccCCCcchHHH
Confidence 9876 899999999999988788889999999999999999999998 67999999993 2 4679
Q ss_pred HHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 208 YGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 208 ~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
+++.+++ |+|+|++|+|++.+.| +++++|+
T Consensus 152 ~a~~l~~~G~d~i~vh~r~~~~~~--~~~~~~~ 182 (319)
T TIGR00737 152 AARIAEDAGAQAVTLHGRTRAQGY--SGEANWD 182 (319)
T ss_pred HHHHHHHhCCCEEEEEcccccccC--CCchhHH
Confidence 9999999 9999999999998874 6888885
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-21 Score=168.20 Aligned_cols=109 Identities=13% Similarity=0.078 Sum_probs=94.9
Q ss_pred CCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 113 HMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 113 ~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
.+.|+++||+|+|++++.++++.+++.+++||||+|||+..+.+.|.|++|+.||+.+.++++++++ .
T Consensus 71 ~~~p~~vqi~g~~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~------------~ 138 (233)
T cd02911 71 SNVLVGVNVRSSSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE------------T 138 (233)
T ss_pred cCCeEEEEecCCCHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh------------c
Confidence 3569999999999999999999998878999999999999988999999999999999999999986 3
Q ss_pred CeeeEEeee--h-hcHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 193 DINIGCPQM--V-AKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 193 ~~pvsvK~r--~-~~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
++||++|+| + .++.++++.+++ |+|.| |.++..+. ..+||+
T Consensus 139 ~~pVsvKir~g~~~~~~~la~~l~~aG~d~i--hv~~~~~g----~~ad~~ 183 (233)
T cd02911 139 GVPVSVKIRAGVDVDDEELARLIEKAGADII--HVDAMDPG----NHADLK 183 (233)
T ss_pred CCCEEEEEcCCcCcCHHHHHHHHHHhCCCEE--EECcCCCC----CCCcHH
Confidence 689999999 4 478999999999 99975 55554432 367885
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >KOG2333|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-21 Score=178.62 Aligned_cols=156 Identities=19% Similarity=0.214 Sum_probs=124.7
Q ss_pred ecccccccCCCccccccCchhhhhhhhcccceeeeC---------------ChhhHHHhhhcccCCCCceeEEeecCCHH
Q psy7344 63 MGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD---------------DWPLLTELGFKTRSHMCGHSLMFCGNDSK 127 (240)
Q Consensus 63 vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~---------------d~eli~~i~~~~~~~~~pvivqi~g~d~~ 127 (240)
...+++++|....-.++|| .+++ .+||..+- .|.|+++. ..+.-+-|||+|+.++
T Consensus 263 ~r~K~~LaPLTTvGNLPFR---RlCk--~lGADvTcgEMA~~tpLlqG~~sEWALlkRH-----~sEdiFGVQlag~~pd 332 (614)
T KOG2333|consen 263 FRDKKYLAPLTTVGNLPFR---RLCK--KLGADVTCGEMAMATPLLQGTASEWALLKRH-----QSEDIFGVQLAGSKPD 332 (614)
T ss_pred cccceeeccccccCCccHH---HHHH--HhCCccchhHHHHHHHHhcccchhhhhhhhc-----CcccceeeEeccCChH
Confidence 3457889999999999997 4543 35553321 23333321 1223588999999999
Q ss_pred HHHHHHHHHcc--CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh---
Q psy7344 128 NLTEAAKLAEP--HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV--- 202 (240)
Q Consensus 128 ~~~~aa~~le~--~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~--- 202 (240)
++.++++.+.+ -+|.||||+|||...+.+.|.|++||.+|..+.++++.+.... -.+|+|||+|.
T Consensus 333 t~~kaaq~i~e~~~VDFIDlN~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs----------~~iPiTVKiRTG~k 402 (614)
T KOG2333|consen 333 TAAKAAQVIAETCDVDFIDLNMGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVS----------GDIPITVKIRTGTK 402 (614)
T ss_pred HHHHHHHHHHhhcceeeeeccCCCChheeeccCCcchhhcCcHHHHHHHHHHHHhc----------cCCCeEEEEecccc
Confidence 99999999965 4799999999999999999999999999999999999988861 35699999993
Q ss_pred ---hcHHHHHHHHh-C-CCCeEEEecccccccCCCCCCCCCCC
Q psy7344 203 ---AKRGHYGAYLQ-D-DWPLLTELGKMAMLVGILDNTGSWTP 240 (240)
Q Consensus 203 ---~~~~~~~~~l~-~-G~~~itih~R~~~~~~~~~~~adw~~ 240 (240)
....++...+. + |+++||+|||.|+|+| +..|||++
T Consensus 403 eg~~~a~~Li~~i~newg~savTlHGRSRqQRY--TK~AnWdY 443 (614)
T KOG2333|consen 403 EGHPVAHELIPRIVNEWGASAVTLHGRSRQQRY--TKSANWDY 443 (614)
T ss_pred cCchhHHHHHHHHhhccCcceEEecCchhhhhh--hcccChHH
Confidence 24567777777 7 9999999999999995 79999985
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.2e-23 Score=182.35 Aligned_cols=142 Identities=24% Similarity=0.291 Sum_probs=99.9
Q ss_pred ccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeeccccccc-CCCccccc-----cCch
Q psy7344 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAE-PHCDGIDI-----NIGC 82 (240)
Q Consensus 9 ~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~la-p~~~~~dl-----~~gC 82 (240)
++.+.++|.||||||||+++|+++|+||+||++|+++.++|.+++ ++.+.|+++|.+.... ...+..++ ..|
T Consensus 74 ~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~-~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G- 151 (309)
T PF01207_consen 74 IVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVR-KAVPIPVSVKIRLGWDDSPEETIEFARILEDAG- 151 (309)
T ss_dssp HHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHH-HH-SSEEEEEEESECT--CHHHHHHHHHHHHTT-
T ss_pred hhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhh-cccccceEEecccccccchhHHHHHHHHhhhcc-
Confidence 344568999999999999999999999999999999999999999 5778999998664333 22222222 667
Q ss_pred hhhhhhhcccceee---eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhccc
Q psy7344 83 PQMVAKRGHYGAYL---QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGH 158 (240)
Q Consensus 83 ~~~i~~~g~~ga~l---~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g 158 (240)
...+++|+||.... ..+|+.+++++..+. .|++.+ +|+.+..++.++++. ++|||||++|
T Consensus 152 ~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~---ipvi~N---GdI~s~~d~~~~~~~tg~dgvMigRg---------- 215 (309)
T PF01207_consen 152 VSAITVHGRTRKQRYKGPADWEAIAEIKEALP---IPVIAN---GDIFSPEDAERMLEQTGADGVMIGRG---------- 215 (309)
T ss_dssp --EEEEECS-TTCCCTS---HHHHHHCHHC-T---SEEEEE---SS--SHHHHHHHCCCH-SSEEEESHH----------
T ss_pred cceEEEecCchhhcCCcccchHHHHHHhhccc---ceeEEc---CccCCHHHHHHHHHhcCCcEEEEchh----------
Confidence 57899999988733 678999999887663 677766 999999999999987 9999999988
Q ss_pred ccccccCCHHHHHH
Q psy7344 159 YGAYLQDDWPLLTN 172 (240)
Q Consensus 159 ~G~~l~~~p~~i~~ 172 (240)
++.||+.+.+
T Consensus 216 ----al~nP~lf~~ 225 (309)
T PF01207_consen 216 ----ALGNPWLFRE 225 (309)
T ss_dssp ----HCC-CCHHCH
T ss_pred ----hhhcCHHhhh
Confidence 4678888875
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-21 Score=163.62 Aligned_cols=158 Identities=23% Similarity=0.303 Sum_probs=124.2
Q ss_pred ccccCCCccccccCchhhhhhhhcccceeee--CChhhHHH-----hhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-
Q psy7344 67 FIAEPHCDGIDINIGCPQMVAKRGHYGAYLQ--DDWPLLTE-----LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP- 138 (240)
Q Consensus 67 ~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~--~d~eli~~-----i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~- 138 (240)
.++|||.+++|++|| .++..+|..-.|.. ....++.. ......+.+.|+++||.+++++++.++++.+.+
T Consensus 2 ~~~aPm~~~~~~~fR--~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~a 79 (231)
T cd02801 2 LILAPMVGVTDLPFR--LLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGSDPETLAEAAKIVEEL 79 (231)
T ss_pred eEeCCCCCCcCHHHH--HHHHHHCCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcCCCHHHHHHHHHHHHhc
Confidence 478999999999998 55555542111210 01122211 111223346899999999999999999999977
Q ss_pred CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh----h-cHHHHHHHHh
Q psy7344 139 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV----A-KRGHYGAYLQ 213 (240)
Q Consensus 139 ~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~----~-~~~~~~~~l~ 213 (240)
|+|+|+||+|||+....+.++|+.++.+|+.+.++++++++. ..+|+++|+|. . ++.++++.++
T Consensus 80 G~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~-----------~~~~v~vk~r~~~~~~~~~~~~~~~l~ 148 (231)
T cd02801 80 GADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREA-----------VPIPVTVKIRLGWDDEEETLELAKALE 148 (231)
T ss_pred CCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHh-----------cCCCEEEEEeeccCCchHHHHHHHHHH
Confidence 899999999999998888999999999999999999999987 55899999993 2 5788999999
Q ss_pred C-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 214 D-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 214 ~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
+ |+++|++|+|++.|.+ .+.++|+
T Consensus 149 ~~Gvd~i~v~~~~~~~~~--~~~~~~~ 173 (231)
T cd02801 149 DAGASALTVHGRTREQRY--SGPADWD 173 (231)
T ss_pred HhCCCEEEECCCCHHHcC--CCCCCHH
Confidence 9 9999999999998853 5677875
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-21 Score=163.62 Aligned_cols=110 Identities=15% Similarity=-0.041 Sum_probs=97.4
Q ss_pred CCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 113 HMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 113 ~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
+..|+++|+++++++++.++++.+++++|+||||+|||++.+.+.|.|++|+.||+.+.++++++++ .
T Consensus 66 ~~~~vivnv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~------------~ 133 (231)
T TIGR00736 66 SRALVSVNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE------------L 133 (231)
T ss_pred hcCCEEEEEecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc------------C
Confidence 3469999999999999999999999999999999999999999999999999999999999999984 4
Q ss_pred CeeeEEeeeh--h--cHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 193 DINIGCPQMV--A--KRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 193 ~~pvsvK~r~--~--~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
++|||+|+|. . ++.++++++++ |+|+|+||.|+... +.+||+
T Consensus 134 ~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~g~-----~~a~~~ 180 (231)
T TIGR00736 134 NKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDAMYPGK-----PYADMD 180 (231)
T ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEeeCCCCC-----chhhHH
Confidence 7899999993 3 67899999999 99999999655421 237885
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >KOG2335|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.4e-21 Score=169.46 Aligned_cols=192 Identities=22% Similarity=0.216 Sum_probs=146.7
Q ss_pred CCccccccCC-CCeecccCCCchhhhhc--------cCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCcc
Q psy7344 5 GRDRIETEPH-CDGIDINIGCPQMVAKR--------GHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDG 75 (240)
Q Consensus 5 ~~~~~~~~~~-~d~id~N~gcP~~kv~k--------~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~ 75 (240)
-|||.|++.+ +|+ . ..||.-+.- ...-+....|.|| |+|+. +++...+++++.++.|++|.
T Consensus 32 l~fR~L~R~y~~~l---~-yTpMi~a~~fv~~ek~r~~~~st~~~D~PL----IvQf~--~ndp~~ll~Aa~lv~~y~D~ 101 (358)
T KOG2335|consen 32 LAFRRLVRLYGADL---L-YTPMIHAKTFVHSEKYRDSELSTSPEDRPL----IVQFG--GNDPENLLKAARLVQPYCDG 101 (358)
T ss_pred HHHHHHHHHhCCce---E-echHHHHHHHhcCccchhhhcccCCCCCce----EEEEc--CCCHHHHHHHHHHhhhhcCc
Confidence 4799999988 454 3 889876521 2233666888888 88987 44444457999999999999
Q ss_pred ccccCchhhhhhhhcccceeeeCChhhHHHhhhcccCC-CCceeEEee-cCCHHHHHHHHHHHcc-CCCEEEecCCCchh
Q psy7344 76 IDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSH-MCGHSLMFC-GNDSKNLTEAAKLAEP-HCDGIDINIGCPQM 152 (240)
Q Consensus 76 ~dl~~gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~~~-~~pvivqi~-g~d~~~~~~aa~~le~-~~d~Idin~gCP~~ 152 (240)
+|+|||||+.++.+|+||++|+.+|+++.+++.+++.. ..||.++|+ +.|.++..+.++++++ |++.+-+.--
T Consensus 102 idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGR---- 177 (358)
T KOG2335|consen 102 IDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGR---- 177 (358)
T ss_pred ccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecc----
Confidence 99999999999999999999999999999998887653 468999996 5699999999999987 6666666322
Q ss_pred hhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 153 VAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 153 ~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
+...+....-..||+.++.+++.+.+ + ||+++..+....+.-+.++. |+++|.. ||..
T Consensus 178 -tr~~kg~~~~pad~~~i~~v~~~~~~-i-------------pviaNGnI~~~~d~~~~~~~tG~dGVM~-argl 236 (358)
T KOG2335|consen 178 -TREQKGLKTGPADWEAIKAVRENVPD-I-------------PVIANGNILSLEDVERCLKYTGADGVMS-ARGL 236 (358)
T ss_pred -cHHhcCCCCCCcCHHHHHHHHHhCcC-C-------------cEEeeCCcCcHHHHHHHHHHhCCceEEe-cchh
Confidence 11111111236899999999988654 4 55555556677888999999 9999988 7753
|
|
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-20 Score=167.93 Aligned_cols=148 Identities=20% Similarity=0.192 Sum_probs=113.0
Q ss_pred ccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCC---ccccc-----cC
Q psy7344 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHC---DGIDI-----NI 80 (240)
Q Consensus 9 ~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~---~~~dl-----~~ 80 (240)
.+.+.++|.||||||||++++.++++|++||++|+++.++|.++. +..+.|+++|.+....+.. +..++ +.
T Consensus 75 ~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~-~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~ 153 (318)
T TIGR00742 75 IAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQ-EAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGK 153 (318)
T ss_pred HHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHH-HHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHc
Confidence 345567999999999999999999999999999999999999999 4678999999654222111 11111 56
Q ss_pred chhhhhhhhcccc-e-ee--e-------CChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCC
Q psy7344 81 GCPQMVAKRGHYG-A-YL--Q-------DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGC 149 (240)
Q Consensus 81 gC~~~i~~~g~~g-a-~l--~-------~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gC 149 (240)
| ...+++|||+. . .+ . .+|+.+.+++..+. ..||+.+ +|+.+..++.++++ +||+|||++|
T Consensus 154 G-~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~--~ipVi~N---GdI~s~~da~~~l~-g~dgVMigRg- 225 (318)
T TIGR00742 154 G-CQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFP--HLTIEIN---GGIKNSEQIKQHLS-HVDGVMVGRE- 225 (318)
T ss_pred C-CCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCC--CCcEEEE---CCcCCHHHHHHHHh-CCCEEEECHH-
Confidence 6 57789999985 1 11 1 26888888766542 3677655 89999999988886 8999999998
Q ss_pred chhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 150 PQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 150 P~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
++.||+.+.++.+.+.
T Consensus 226 -------------al~nP~if~~~~~~l~ 241 (318)
T TIGR00742 226 -------------AYENPYLLANVDREIF 241 (318)
T ss_pred -------------HHhCCHHHHHHHHHhc
Confidence 4679999988877654
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.8e-20 Score=164.64 Aligned_cols=151 Identities=19% Similarity=0.201 Sum_probs=117.3
Q ss_pred cccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccC-CCccccc-----cCc
Q psy7344 8 RIETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEP-HCDGIDI-----NIG 81 (240)
Q Consensus 8 ~~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap-~~~~~dl-----~~g 81 (240)
+.+.+.++|.||||||||++|+.++++||+|+++|+++.+++.++. ++.+.|+++|.+.-..+ ..+..++ ..|
T Consensus 84 ~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~-~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G 162 (321)
T PRK10415 84 RINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVV-NAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCG 162 (321)
T ss_pred HHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHH-HhcCCceEEEEEccccCCcchHHHHHHHHHHhC
Confidence 3455678999999999999999999999999999999999999998 46788999885422111 1122222 455
Q ss_pred hhhhhhhhcccceee---eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcc
Q psy7344 82 CPQMVAKRGHYGAYL---QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRG 157 (240)
Q Consensus 82 C~~~i~~~g~~ga~l---~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~ 157 (240)
...+++|+|+.... ..+|+++++++..+ ..|++.+ +|+.+..++.++++. ++|+|++++|
T Consensus 163 -~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~---~iPVI~n---GgI~s~~da~~~l~~~gadgVmiGR~--------- 226 (321)
T PRK10415 163 -IQALTIHGRTRACLFNGEAEYDSIRAVKQKV---SIPVIAN---GDITDPLKARAVLDYTGADALMIGRA--------- 226 (321)
T ss_pred -CCEEEEecCccccccCCCcChHHHHHHHHhc---CCcEEEe---CCCCCHHHHHHHHhccCCCEEEEChH---------
Confidence 46788899886532 46899999987754 3787765 899888999999975 8999999988
Q ss_pred cccccccCCHHHHHHHHHHhhhc
Q psy7344 158 HYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 158 g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
++.||+.+.++.+.+..+
T Consensus 227 -----~l~nP~if~~~~~~~~~~ 244 (321)
T PRK10415 227 -----AQGRPWIFREIQHYLDTG 244 (321)
T ss_pred -----hhcCChHHHHHHHHHhCC
Confidence 568999999988776543
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=9e-20 Score=163.15 Aligned_cols=144 Identities=17% Similarity=0.150 Sum_probs=111.2
Q ss_pred ccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccC--CCceeecccccccCCCccccc-----cCc
Q psy7344 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSK--NGPLFMGPLFIAEPHCDGIDI-----NIG 81 (240)
Q Consensus 9 ~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~--~~p~~vk~~~~lap~~~~~dl-----~~g 81 (240)
.+.+.++|.||||||||+++|.++|+||+||++|+++.+|+.++. +.. +.|+++|.+.-........++ ..|
T Consensus 83 ~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr-~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~G 161 (312)
T PRK10550 83 RAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMR-EAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAG 161 (312)
T ss_pred HHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHH-HhcCCCcceEEEEECCCCCchHHHHHHHHHHhcC
Confidence 445678999999999999999999999999999999999999998 454 479999865321111112222 566
Q ss_pred hhhhhhhhccccee--e-e-CChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhc
Q psy7344 82 CPQMVAKRGHYGAY--L-Q-DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKR 156 (240)
Q Consensus 82 C~~~i~~~g~~ga~--l-~-~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~ 156 (240)
...+++|+|+... . . .+|+.+.+++..+ ..||+.+ +|+.+..++.++++. +||+|||++|
T Consensus 162 -vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~---~iPVi~n---GdI~t~~da~~~l~~~g~DgVmiGRg-------- 226 (312)
T PRK10550 162 -ATELVVHGRTKEDGYRAEHINWQAIGEIRQRL---TIPVIAN---GEIWDWQSAQQCMAITGCDAVMIGRG-------- 226 (312)
T ss_pred -CCEEEECCCCCccCCCCCcccHHHHHHHHhhc---CCcEEEe---CCcCCHHHHHHHHhccCCCEEEEcHH--------
Confidence 5778999988763 2 2 3799999988764 3787665 999999999999965 8999999998
Q ss_pred ccccccccCCHHHHHHHH
Q psy7344 157 GHYGAYLQDDWPLLTNLV 174 (240)
Q Consensus 157 ~g~G~~l~~~p~~i~~iv 174 (240)
++.||+.++++.
T Consensus 227 ------~l~nP~lf~~~~ 238 (312)
T PRK10550 227 ------ALNIPNLSRVVK 238 (312)
T ss_pred ------hHhCcHHHHHhh
Confidence 467888887664
|
|
| >KOG2334|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.1e-18 Score=153.00 Aligned_cols=151 Identities=23% Similarity=0.252 Sum_probs=127.1
Q ss_pred cccccccCCCccccccCchhhhhhhhcccceeeeCChhhHHH-------------------------hhhcccCC-CCce
Q psy7344 64 GPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTE-------------------------LGFKTRSH-MCGH 117 (240)
Q Consensus 64 k~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~-------------------------i~~~~~~~-~~pv 117 (240)
..+.+++||+..-+++++ +++. .||+.+...||++.. +++.+.+. ..-+
T Consensus 10 ~nk~iLApMvr~G~lpmr---LLal--~~Gadlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e~~rl 84 (477)
T KOG2334|consen 10 RNKLILAPMVRAGELPMR---LLAL--QYGADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAENSRL 84 (477)
T ss_pred cCcEeeehHHHhccchHH---HHHH--HhccceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhhcCeE
Confidence 446789999998888886 6665 488977666776652 11222222 1247
Q ss_pred eEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeE
Q psy7344 118 SLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIG 197 (240)
Q Consensus 118 ivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvs 197 (240)
+.|++.++++-..++|+.+.+-+.|||+|+|||-....|+|+|++|+.+|+.+..|+..+.++ .++|++
T Consensus 85 ilQ~gT~sa~lA~e~A~lv~nDvsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~-----------~~vpvt 153 (477)
T KOG2334|consen 85 ILQIGTASAELALEAAKLVDNDVSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKG-----------NKVPVT 153 (477)
T ss_pred EEEecCCcHHHHHHHHHHhhcccccccccCCCCCccccccCCCchhhcCHHHHHHHHHHHHhc-----------Ccccce
Confidence 889999999999999999998899999999999999999999999999999999999999888 789999
Q ss_pred Eeee----hhcHHHHHHHHhC-CCCeEEEecccccccC
Q psy7344 198 CPQM----VAKRGHYGAYLQD-DWPLLTELGKMAMLVG 230 (240)
Q Consensus 198 vK~r----~~~~~~~~~~l~~-G~~~itih~R~~~~~~ 230 (240)
+|+| .++|+++.+.++. |+.+|++|+||+..+-
T Consensus 154 ckIR~L~s~edtL~lv~ri~~tgi~ai~vh~rt~d~r~ 191 (477)
T KOG2334|consen 154 CKIRLLDSKEDTLKLVKRICATGIAAITVHCRTRDERN 191 (477)
T ss_pred eEEEecCCcccHHHHHHHHHhcCCceEEEEeeccccCC
Confidence 9999 3679999999999 9999999999999873
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.3e-18 Score=149.77 Aligned_cols=111 Identities=15% Similarity=0.107 Sum_probs=97.9
Q ss_pred CCceeEEeecC-CHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCGN-DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g~-d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
+.|+++|+.|+ +++++.++++.+++ ++|+||||+|||+.. .+.+.|++++.||+.+.++++++++.
T Consensus 99 ~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~-~~~~~G~~l~~~~~~~~~iv~~v~~~----------- 166 (299)
T cd02940 99 DKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGM-PERGMGAAVGQDPELVEEICRWVREA----------- 166 (299)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC-CCCCCchhhccCHHHHHHHHHHHHHh-----------
Confidence 47999999998 99999999999986 799999999999984 45568999999999999999999988
Q ss_pred CCeeeEEeee--hhcHHHHHHHHhC-CCCeEE---------------------EecccccccCCCCCCCCC
Q psy7344 192 NDINIGCPQM--VAKRGHYGAYLQD-DWPLLT---------------------ELGKMAMLVGILDNTGSW 238 (240)
Q Consensus 192 ~~~pvsvK~r--~~~~~~~~~~l~~-G~~~it---------------------ih~R~~~~~~~~~~~adw 238 (240)
+++||++|++ ++++.++++.+++ |+|+|+ +|+||+.+. |+|+++|
T Consensus 167 ~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg--~sG~a~~ 235 (299)
T cd02940 167 VKIPVIAKLTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGG--YSGPAVK 235 (299)
T ss_pred cCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCc--ccCCCcc
Confidence 6889999999 4578899999999 999998 567777776 5799884
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-17 Score=142.56 Aligned_cols=129 Identities=19% Similarity=0.120 Sum_probs=97.4
Q ss_pred cCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCccccc-----cCchhhhh
Q psy7344 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDI-----NIGCPQMV 86 (240)
Q Consensus 12 ~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~dl-----~~gC~~~i 86 (240)
+.++|.||||||||++++.++++|++||+||+++.+++.++. ..+.|+++|.+... +..+..++ ..| ...+
T Consensus 90 ~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~--~~~~PVsvKiR~~~-~~~~~~~~a~~l~~aG-ad~i 165 (231)
T TIGR00736 90 AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMK--ELNKPIFVKIRGNC-IPLDELIDALNLVDDG-FDGI 165 (231)
T ss_pred hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHH--cCCCcEEEEeCCCC-CcchHHHHHHHHHHcC-CCEE
Confidence 457999999999999999999999999999999999999998 45799999854211 11122222 445 3456
Q ss_pred hhhcccceeeeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCC
Q psy7344 87 AKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGC 149 (240)
Q Consensus 87 ~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gC 149 (240)
++|.+|...-..+|+.|+++...++ ..|+|.+ +|+.+..++.++++.|||+|++++|.
T Consensus 166 ~Vd~~~~g~~~a~~~~I~~i~~~~~--~ipIIgN---GgI~s~eda~e~l~~GAd~VmvgR~~ 223 (231)
T TIGR00736 166 HVDAMYPGKPYADMDLLKILSEEFN--DKIIIGN---NSIDDIESAKEMLKAGADFVSVARAI 223 (231)
T ss_pred EEeeCCCCCchhhHHHHHHHHHhcC--CCcEEEE---CCcCCHHHHHHHHHhCCCeEEEcHhh
Confidence 6665443211147999999877652 2676655 99999999999999899999999874
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.6e-16 Score=137.87 Aligned_cols=98 Identities=16% Similarity=0.173 Sum_probs=88.2
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc---CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP---HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCD 190 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~---~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~ 190 (240)
..|+++||+|++++++.++++.+++ ++|+||||+|||+.. ++|++++.+|+.+.++++++++.
T Consensus 90 ~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~----~~g~~l~~~~~~~~eiv~~vr~~---------- 155 (300)
T TIGR01037 90 PTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK----GGGIAIGQDPELSADVVKAVKDK---------- 155 (300)
T ss_pred CCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCC----CCccccccCHHHHHHHHHHHHHh----------
Confidence 4699999999999999999999975 389999999999962 57888999999999999999998
Q ss_pred CCCeeeEEeee--hhcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 191 GNDINIGCPQM--VAKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 191 ~~~~pvsvK~r--~~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
+++||++|++ +++..++++.+++ |+|+|++|+++.
T Consensus 156 -~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~ 193 (300)
T TIGR01037 156 -TDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLR 193 (300)
T ss_pred -cCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCC
Confidence 6889999999 5678899999999 999999997653
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.7e-17 Score=144.92 Aligned_cols=147 Identities=18% Similarity=0.166 Sum_probs=108.7
Q ss_pred cccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCC---Cccccc-----cCc
Q psy7344 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPH---CDGIDI-----NIG 81 (240)
Q Consensus 10 ~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~---~~~~dl-----~~g 81 (240)
+.+.++|.||||||||++++.++++|++|+++|+++.+++.++. +..+.|+++|.+...... .+..++ +.|
T Consensus 86 ~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr-~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG 164 (333)
T PRK11815 86 AEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMK-DAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAG 164 (333)
T ss_pred HHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHH-HHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhC
Confidence 44567999999999999999999999999999999999999999 466889999864322211 111122 456
Q ss_pred hhhhhhhhcccce---ee--------eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCc
Q psy7344 82 CPQMVAKRGHYGA---YL--------QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCP 150 (240)
Q Consensus 82 C~~~i~~~g~~ga---~l--------~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP 150 (240)
...+++|+|++. +. ..+|+.+.++...+. +.||+.+ +++.+..++.++++ ++|+|++++|
T Consensus 165 -~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~--~iPVI~n---GgI~s~eda~~~l~-~aDgVmIGRa-- 235 (333)
T PRK11815 165 -CDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFP--HLTIEIN---GGIKTLEEAKEHLQ-HVDGVMIGRA-- 235 (333)
T ss_pred -CCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCC--CCeEEEE---CCcCCHHHHHHHHh-cCCEEEEcHH--
Confidence 466788888752 11 145888887764421 3677655 88888888888876 4999999888
Q ss_pred hhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 151 QMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 151 ~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
++.||+.+.++.+.+.
T Consensus 236 ------------~l~nP~~~~~~~~~~~ 251 (333)
T PRK11815 236 ------------AYHNPYLLAEVDRELF 251 (333)
T ss_pred ------------HHhCCHHHHHHHHHhc
Confidence 5789999988876654
|
|
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.8e-16 Score=144.47 Aligned_cols=110 Identities=14% Similarity=0.080 Sum_probs=96.1
Q ss_pred CCceeEEeecC-CHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCGN-DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g~-d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
+.|+++||.|+ +++++.++++.+++ ++|+||||+|||+.. ...+.|++++.+|+.+.+|++++++.
T Consensus 99 ~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~-~~~~~g~~~~~~~~~~~~i~~~v~~~----------- 166 (420)
T PRK08318 99 DRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGM-SERGMGSAVGQVPELVEMYTRWVKRG----------- 166 (420)
T ss_pred CceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCc-cccCCcccccCCHHHHHHHHHHHHhc-----------
Confidence 47899999998 89999999999977 799999999999943 44568899999999999999999998
Q ss_pred CCeeeEEeee--hhcHHHHHHHHhC-CCCeEE---------------------EecccccccCCCCCCCC
Q psy7344 192 NDINIGCPQM--VAKRGHYGAYLQD-DWPLLT---------------------ELGKMAMLVGILDNTGS 237 (240)
Q Consensus 192 ~~~pvsvK~r--~~~~~~~~~~l~~-G~~~it---------------------ih~R~~~~~~~~~~~ad 237 (240)
+++||++|++ +.+..++++.+++ |+|+|+ +|+|++.+. |+|++.
T Consensus 167 ~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg--~SG~a~ 234 (420)
T PRK08318 167 SRLPVIVKLTPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGG--YCGPAV 234 (420)
T ss_pred cCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCccc--ccchhh
Confidence 6899999999 4577899999999 999999 577877776 478884
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.3e-16 Score=134.12 Aligned_cols=120 Identities=13% Similarity=0.102 Sum_probs=89.2
Q ss_pred CCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCccccc-----cCchhhhhhh
Q psy7344 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDI-----NIGCPQMVAK 88 (240)
Q Consensus 14 ~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~dl-----~~gC~~~i~~ 88 (240)
+.|.||||||||+++++++++|++||+||+++.+++.++. ..+.|+++|...... .+..++ ..| ...+
T Consensus 97 ~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr--~~~~pVsvKir~g~~--~~~~~la~~l~~aG-~d~i-- 169 (233)
T cd02911 97 NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALK--ETGVPVSVKIRAGVD--VDDEELARLIEKAG-ADII-- 169 (233)
T ss_pred cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHH--hcCCCEEEEEcCCcC--cCHHHHHHHHHHhC-CCEE--
Confidence 5799999999999999999999999999999999999999 358999998542211 222222 334 2222
Q ss_pred hccccee-eeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCC
Q psy7344 89 RGHYGAY-LQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIG 148 (240)
Q Consensus 89 ~g~~ga~-l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~g 148 (240)
|.+.+.. ...+|+.|+++. ...|++.+ +++.+..++.++++.|+|+|+++++
T Consensus 170 hv~~~~~g~~ad~~~I~~i~-----~~ipVIgn---GgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 170 HVDAMDPGNHADLKKIRDIS-----TELFIIGN---NSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred EECcCCCCCCCcHHHHHHhc-----CCCEEEEE---CCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 3322211 245788888874 13676654 8999999999999889999999888
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >KOG2333|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-15 Score=138.65 Aligned_cols=142 Identities=20% Similarity=0.171 Sum_probs=108.4
Q ss_pred CCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeeccccc-ccC------CCccccccCchhhhhh
Q psy7344 15 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFI-AEP------HCDGIDINIGCPQMVA 87 (240)
Q Consensus 15 ~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~-lap------~~~~~dl~~gC~~~i~ 87 (240)
+|+||||||||..-|.++|+||+||+.|..+.++|..+.+.....|+|||.+.- -++ ++.-+.-+-| +.+++
T Consensus 347 VDFIDlN~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~newg-~savT 425 (614)
T KOG2333|consen 347 VDFIDLNMGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEGHPVAHELIPRIVNEWG-ASAVT 425 (614)
T ss_pred eeeeeccCCCChheeeccCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEEecccccCchhHHHHHHHHhhccC-cceEE
Confidence 799999999999999999999999999999999999888422346999985421 111 1111111556 67899
Q ss_pred hhcccce--ee-eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccC--CCEEEecCCCchhhhhccccccc
Q psy7344 88 KRGHYGA--YL-QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAY 162 (240)
Q Consensus 88 ~~g~~ga--~l-~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~--~d~Idin~gCP~~~~~~~g~G~~ 162 (240)
.|||.+. |. .+||++|.+...++++. .|+|. ++|+-++++..+.+... +++|||.+|
T Consensus 426 lHGRSRqQRYTK~AnWdYi~e~a~~ak~~-l~liG---NGDi~S~eDw~~~~~~~p~v~svMIaRG-------------- 487 (614)
T KOG2333|consen 426 LHGRSRQQRYTKSANWDYIEECADKAKSA-LPLIG---NGDILSWEDWYERLNQNPNVDSVMIARG-------------- 487 (614)
T ss_pred ecCchhhhhhhcccChHHHHHHHHhcccC-ceeEe---cCccccHHHHHHHhhcCCCcceEEeecc--------------
Confidence 9998776 55 68999999988776543 34443 48999999999998763 899999999
Q ss_pred ccCCHHHHHHHHH
Q psy7344 163 LQDDWPLLTNLVY 175 (240)
Q Consensus 163 l~~~p~~i~~iv~ 175 (240)
.+-.|+.+.+|.+
T Consensus 488 ALIKPWIFtEIke 500 (614)
T KOG2333|consen 488 ALIKPWIFTEIKE 500 (614)
T ss_pred ccccchHhhhhhh
Confidence 2467888877765
|
|
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-15 Score=134.95 Aligned_cols=149 Identities=21% Similarity=0.252 Sum_probs=110.4
Q ss_pred ccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccC-CCccccc-----cCch
Q psy7344 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEP-HCDGIDI-----NIGC 82 (240)
Q Consensus 9 ~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap-~~~~~dl-----~~gC 82 (240)
...+.++|.||||+|||+++++++++|++|+++|+++.+++.++. +..+.|+++|...-..+ ..+..++ ..|
T Consensus 83 ~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr-~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G- 160 (319)
T TIGR00737 83 INEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVV-DAVDIPVTVKIRIGWDDAHINAVEAARIAEDAG- 160 (319)
T ss_pred HHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHH-hhcCCCEEEEEEcccCCCcchHHHHHHHHHHhC-
Confidence 345568999999999999999999999999999999999999998 46678998885421111 1111222 345
Q ss_pred hhhhhhhcccceee---eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhccc
Q psy7344 83 PQMVAKRGHYGAYL---QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGH 158 (240)
Q Consensus 83 ~~~i~~~g~~ga~l---~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g 158 (240)
...+++|+++.... ..+|+.+++++..+ ..|++.+ +++.+..++.++++. ++|+|+++++
T Consensus 161 ~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~---~ipvi~n---GgI~~~~da~~~l~~~gad~VmigR~---------- 224 (319)
T TIGR00737 161 AQAVTLHGRTRAQGYSGEANWDIIARVKQAV---RIPVIGN---GDIFSPEDAKAMLETTGCDGVMIGRG---------- 224 (319)
T ss_pred CCEEEEEcccccccCCCchhHHHHHHHHHcC---CCcEEEe---CCCCCHHHHHHHHHhhCCCEEEEChh----------
Confidence 35677787765422 34688888877654 3677665 888888888888854 7999999877
Q ss_pred ccccccCCHHHHHHHHHHhhh
Q psy7344 159 YGAYLQDDWPLLTNLVYSPNM 179 (240)
Q Consensus 159 ~G~~l~~~p~~i~~iv~~~~~ 179 (240)
++.||+.+.++.+.+..
T Consensus 225 ----~l~~P~l~~~~~~~~~~ 241 (319)
T TIGR00737 225 ----ALGNPWLFRQIEQYLTT 241 (319)
T ss_pred ----hhhCChHHHHHHHHHhC
Confidence 56899988888776554
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-14 Score=127.23 Aligned_cols=98 Identities=16% Similarity=0.161 Sum_probs=87.2
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-C-CCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-H-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~-~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
+.|+++||.|++++++.++++.+++ | +|+||||++||+.. +| |..+..+++.+.++++++++.
T Consensus 91 ~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~---~g-g~~~~~~~~~~~eiv~~vr~~----------- 155 (301)
T PRK07259 91 DTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVK---HG-GMAFGTDPELAYEVVKAVKEV----------- 155 (301)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCC---CC-ccccccCHHHHHHHHHHHHHh-----------
Confidence 5899999999999999999999977 6 99999999999952 22 677889999999999999998
Q ss_pred CCeeeEEeee--hhcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 192 NDINIGCPQM--VAKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 192 ~~~pvsvK~r--~~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
+++||++|++ ++++.++++.+++ |+|+|++++++.
T Consensus 156 ~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~ 193 (301)
T PRK07259 156 VKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLK 193 (301)
T ss_pred cCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEcccc
Confidence 6889999999 5678899999999 999999977654
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.8e-14 Score=125.89 Aligned_cols=98 Identities=16% Similarity=0.180 Sum_probs=86.5
Q ss_pred CCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 113 HMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 113 ~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
.+.|+++||.+++++++.++++.+++ |+|+||||++||+.. +.|++++.+|+.+.++++++++.
T Consensus 88 ~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~----~~g~~~~~~~~~~~eiv~~vr~~----------- 152 (296)
T cd04740 88 FGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVK----GGGMAFGTDPEAVAEIVKAVKKA----------- 152 (296)
T ss_pred CCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCC----CCcccccCCHHHHHHHHHHHHhc-----------
Confidence 35799999999999999999999977 699999999999852 33778899999999999999998
Q ss_pred CCeeeEEeee--hhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 192 NDINIGCPQM--VAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 192 ~~~pvsvK~r--~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+++||++|++ .+++.++++.+++ |+|+|++++++
T Consensus 153 ~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~ 189 (296)
T cd04740 153 TDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTL 189 (296)
T ss_pred cCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCC
Confidence 6899999999 4568899999999 99999997654
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-13 Score=121.00 Aligned_cols=98 Identities=16% Similarity=0.164 Sum_probs=86.1
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
+.|+++||++++++++.++++.+++ ++|+|+||++||+... +..++.+|+.+.++++++++. +
T Consensus 98 ~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~-----~~~~~~~~~~~~eiv~~vr~~-----------~ 161 (289)
T cd02810 98 GQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGG-----GRQLGQDPEAVANLLKAVKAA-----------V 161 (289)
T ss_pred CCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccCHHHHHHHHHHHHHc-----------c
Confidence 5899999999999999999999977 6999999999998532 334788999999999999998 6
Q ss_pred CeeeEEeee--hh--cHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 193 DINIGCPQM--VA--KRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 193 ~~pvsvK~r--~~--~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
++||++|++ ++ ++.++++.+++ |+|+|++|+|+..
T Consensus 162 ~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~ 201 (289)
T cd02810 162 DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISG 201 (289)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCc
Confidence 889999999 22 67899999999 9999999999753
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.2e-13 Score=120.45 Aligned_cols=104 Identities=8% Similarity=-0.002 Sum_probs=82.9
Q ss_pred CCCceeEEeecCC-------HHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhcccccc
Q psy7344 113 HMCGHSLMFCGND-------SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIA 185 (240)
Q Consensus 113 ~~~pvivqi~g~d-------~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~ 185 (240)
.+.|+++||.+++ .+++.+.++.+...+|+||+|++||+.. + ...+.+|+.+.++++++++.+...
T Consensus 127 ~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~----g--~~~~~~~~~~~~iv~av~~~~~~~- 199 (327)
T cd04738 127 RGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTP----G--LRDLQGKEALRELLTAVKEERNKL- 199 (327)
T ss_pred CCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCC----c--cccccCHHHHHHHHHHHHHHHhhc-
Confidence 3579999998876 5777777787777799999999999852 2 224789999999999999972000
Q ss_pred CCCCCCCCeeeEEeee--hh--cHHHHHHHHhC-CCCeEEEecccccc
Q psy7344 186 EPHCDGNDINIGCPQM--VA--KRGHYGAYLQD-DWPLLTELGKMAML 228 (240)
Q Consensus 186 ~~~~~~~~~pvsvK~r--~~--~~~~~~~~l~~-G~~~itih~R~~~~ 228 (240)
+.++||++|++ ++ ++.++++.+++ |+|+|++|+|+..+
T Consensus 200 -----~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~ 242 (327)
T cd04738 200 -----GKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISR 242 (327)
T ss_pred -----ccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccc
Confidence 01389999999 32 67889999999 99999999998754
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-12 Score=119.67 Aligned_cols=102 Identities=14% Similarity=0.127 Sum_probs=90.6
Q ss_pred CCceeEEeec-CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCG-NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g-~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
++|+|++|++ .+++++.+.++.+++ ++|+|+||++||+....++ .|.++..+|+.++++++++++.
T Consensus 113 ~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~-~g~~~gq~~e~~~~i~~~Vk~~----------- 180 (385)
T PLN02495 113 DRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERK-MGAAVGQDCDLLEEVCGWINAK----------- 180 (385)
T ss_pred CCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCc-cchhhccCHHHHHHHHHHHHHh-----------
Confidence 4799999977 799999999999987 6999999999999654443 6888899999999999999988
Q ss_pred CCeeeEEeee--hhcHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 192 NDINIGCPQM--VAKRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 192 ~~~pvsvK~r--~~~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
+++||.+|+. +++..++++++++ |+|+|++..++..
T Consensus 181 ~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~~ 219 (385)
T PLN02495 181 ATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIMS 219 (385)
T ss_pred hcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccCc
Confidence 7899999999 6678899999999 9999999998863
|
|
| >KOG2334|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.1e-13 Score=122.34 Aligned_cols=209 Identities=17% Similarity=0.195 Sum_probs=140.2
Q ss_pred cccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCccccc-----cCchhh
Q psy7344 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDI-----NIGCPQ 84 (240)
Q Consensus 10 ~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~dl-----~~gC~~ 84 (240)
++...+..||+|||||=.-.+++|-|++|+.+|+.+..|+..|+ ++++.|++.|.+ +|..-.|-+++ ..| +.
T Consensus 102 lv~nDvsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLv-k~~~vpvtckIR-~L~s~edtL~lv~ri~~tg-i~ 178 (477)
T KOG2334|consen 102 LVDNDVSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLV-KGNKVPVTCKIR-LLDSKEDTLKLVKRICATG-IA 178 (477)
T ss_pred HhhcccccccccCCCCCccccccCCCchhhcCHHHHHHHHHHHH-hcCcccceeEEE-ecCCcccHHHHHHHHHhcC-Cc
Confidence 34556789999999999999999999999999999999999999 688999998866 33323333333 555 66
Q ss_pred hhhhhcccceee---eCChhhHHHhhhcccCCCCceeEE--------------------------------------eec
Q psy7344 85 MVAKRGHYGAYL---QDDWPLLTELGFKTRSHMCGHSLM--------------------------------------FCG 123 (240)
Q Consensus 85 ~i~~~g~~ga~l---~~d~eli~~i~~~~~~~~~pvivq--------------------------------------i~g 123 (240)
.+++|+|+.-.- ....+.++++..... ..|++++ .-|
T Consensus 179 ai~vh~rt~d~r~~~~~~~~~i~~i~~~~~--~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n~SiF~~eG 256 (477)
T KOG2334|consen 179 AITVHCRTRDERNQEPATKDYIREIAQACQ--MVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAESNPSIFREEG 256 (477)
T ss_pred eEEEEeeccccCCCCCCCHHHHHHHHHHhc--cceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhcCCceeeecC
Confidence 777887765433 222344444322111 0222222 111
Q ss_pred CCHH--HHHHHHHH---Hcc--C----C---CEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCC
Q psy7344 124 NDSK--NLTEAAKL---AEP--H----C---DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHC 189 (240)
Q Consensus 124 ~d~~--~~~~aa~~---le~--~----~---d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~ 189 (240)
.+++ ...+..++ ..+ + | --.+++.+||......++.+.+.+..++.+..+.+..+..
T Consensus 257 ~~~~~~~~~~fl~~a~~~dn~~~ntkycl~~il~~~~~~~p~~~~~~~~~~~~~i~k~~~i~d~~~~~~~e--------- 327 (477)
T KOG2334|consen 257 CLSEKEVIREFLRLAVQYDNHYGNTKYCLQRILRGIQEGCPRGKRIQAAQTVAQICKAFEIEDIYATLKRE--------- 327 (477)
T ss_pred CchHHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhhccCchhhHhhcchhHHHHHHHhcchhHHHhhHHh---------
Confidence 1111 11112221 111 1 1 2356889999988888888888889999999998887776
Q ss_pred CCCCeeeEEeee----hhcHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 190 DGNDINIGCPQM----VAKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 190 ~~~~~pvsvK~r----~~~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
.+.|+ .|.| ..++..+++.+++ + .+.+|+|....+. +-+++|+
T Consensus 328 --l~~~~-~k~Rl~~~~~d~~~~~~~le~~~--~l~i~~r~~f~r~--~~pa~~~ 375 (477)
T KOG2334|consen 328 --LDTPV-CKKRLLVSPADTVNLAERLEDLS--ALAIHGRKIFDRP--TDPAKWD 375 (477)
T ss_pred --hcccc-ccceeeeCcchhhhHhhhHHhcc--chhhhhccccccc--CCCcCCC
Confidence 67777 7888 2467888899999 8 7789999966663 4578886
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.7e-12 Score=115.72 Aligned_cols=97 Identities=12% Similarity=0.043 Sum_probs=82.1
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
+.|+++||.+++++++.++++.+++ ++|+|+||++||... .+.+|.+ .++.+.++++++++. +
T Consensus 99 ~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~--~~~~g~~---~~~~~~eiv~~v~~~-----------~ 162 (325)
T cd04739 99 SIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTD--PDISGAE---VEQRYLDILRAVKSA-----------V 162 (325)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCC--CCcccch---HHHHHHHHHHHHHhc-----------c
Confidence 5799999999999999999999977 799999999996532 1334443 357888999999988 6
Q ss_pred CeeeEEeee--hhcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 193 DINIGCPQM--VAKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 193 ~~pvsvK~r--~~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
++||++|++ +++..++++.+++ |+|+|++|+|+.
T Consensus 163 ~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt~~ 199 (325)
T cd04739 163 TIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFNRFY 199 (325)
T ss_pred CCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEcCcC
Confidence 899999999 4678899999999 999999999974
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.1e-12 Score=111.92 Aligned_cols=94 Identities=12% Similarity=0.153 Sum_probs=76.1
Q ss_pred CCCceeEEeecCCHHHHHHHHHHHcc----CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCC
Q psy7344 113 HMCGHSLMFCGNDSKNLTEAAKLAEP----HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPH 188 (240)
Q Consensus 113 ~~~pvivqi~g~d~~~~~~aa~~le~----~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~ 188 (240)
.+.|+++||.++ ++++.++++.+++ ++|+||||+|||+.. +. ..+..||+.+.++++++++.
T Consensus 90 ~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~----~~-~~~~~~~~~~~~i~~~v~~~-------- 155 (294)
T cd04741 90 SAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVP----GK-PPPAYDFDATLEYLTAVKAA-------- 155 (294)
T ss_pred cCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCC----Cc-ccccCCHHHHHHHHHHHHHh--------
Confidence 357999999998 9999999888865 589999999999952 22 24678999999999999998
Q ss_pred CCCCCeeeEEeee--h--hcHHHHHHHHhC---CCCeEEEec
Q psy7344 189 CDGNDINIGCPQM--V--AKRGHYGAYLQD---DWPLLTELG 223 (240)
Q Consensus 189 ~~~~~~pvsvK~r--~--~~~~~~~~~l~~---G~~~itih~ 223 (240)
+++||++|++ + .++.++++.+.+ |+|+|+++.
T Consensus 156 ---~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~N 194 (294)
T cd04741 156 ---YSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATN 194 (294)
T ss_pred ---cCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEc
Confidence 7899999999 2 245667777755 689999543
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.7e-12 Score=114.98 Aligned_cols=103 Identities=8% Similarity=-0.056 Sum_probs=82.1
Q ss_pred CCCceeEEeecC-------CHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhcccccc
Q psy7344 113 HMCGHSLMFCGN-------DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIA 185 (240)
Q Consensus 113 ~~~pvivqi~g~-------d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~ 185 (240)
.+.|++++|.++ ..+++.+.++.+++++|+|++|++||+.. + .....+++.+.++++++++.+...
T Consensus 136 ~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~----g--~~~~~~~~~~~eiv~aVr~~~~~~- 208 (344)
T PRK05286 136 RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTP----G--LRDLQYGEALDELLAALKEAQAEL- 208 (344)
T ss_pred CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCC----C--cccccCHHHHHHHHHHHHHHHhcc-
Confidence 357999999875 56788888888877899999999999863 2 223789999999999999982000
Q ss_pred CCCCCCCCeeeEEeeeh----hcHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 186 EPHCDGNDINIGCPQMV----AKRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 186 ~~~~~~~~~pvsvK~r~----~~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
. .++||++|++. ++..++++.+++ |+|+|++|+|+..
T Consensus 209 -~----~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~ 250 (344)
T PRK05286 209 -H----GYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLS 250 (344)
T ss_pred -c----cCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccc
Confidence 0 02899999993 257899999999 9999999999853
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-12 Score=110.35 Aligned_cols=144 Identities=23% Similarity=0.304 Sum_probs=102.9
Q ss_pred cccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCccccc-----cCchhh
Q psy7344 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDI-----NIGCPQ 84 (240)
Q Consensus 10 ~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~dl-----~~gC~~ 84 (240)
+.+.|+|.|+||+|||+.++.+.++|+.++++++++.+++.++. +....|+++|......+..+..++ ..| ..
T Consensus 76 ~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~-~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~G-vd 153 (231)
T cd02801 76 VEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVR-EAVPIPVTVKIRLGWDDEEETLELAKALEDAG-AS 153 (231)
T ss_pred HHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHH-HhcCCCEEEEEeeccCCchHHHHHHHHHHHhC-CC
Confidence 34458999999999999999999999999999999999999998 355578888743211110011111 334 24
Q ss_pred hhhhhcccce--ee-eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhccccc
Q psy7344 85 MVAKRGHYGA--YL-QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYG 160 (240)
Q Consensus 85 ~i~~~g~~ga--~l-~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G 160 (240)
.+++|+++.. +. ..+++.++.+.... ..|+++. ++..+..++.++++. ++|+|+++++
T Consensus 154 ~i~v~~~~~~~~~~~~~~~~~~~~i~~~~---~ipvi~~---Ggi~~~~d~~~~l~~~gad~V~igr~------------ 215 (231)
T cd02801 154 ALTVHGRTREQRYSGPADWDYIAEIKEAV---SIPVIAN---GDIFSLEDALRCLEQTGVDGVMIGRG------------ 215 (231)
T ss_pred EEEECCCCHHHcCCCCCCHHHHHHHHhCC---CCeEEEe---CCCCCHHHHHHHHHhcCCCEEEEcHH------------
Confidence 5666766543 22 34677777765432 3676655 777788888888887 7999999887
Q ss_pred ccccCCHHHHHHHHH
Q psy7344 161 AYLQDDWPLLTNLVY 175 (240)
Q Consensus 161 ~~l~~~p~~i~~iv~ 175 (240)
++.||+.+.++.+
T Consensus 216 --~l~~P~~~~~~~~ 228 (231)
T cd02801 216 --ALGNPWLFREIKE 228 (231)
T ss_pred --hHhCCHHHHhhhh
Confidence 6789999888765
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-11 Score=110.85 Aligned_cols=98 Identities=11% Similarity=0.053 Sum_probs=81.4
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
+.|+++||++.+++++.++++.+++ ++|+|+||++||.... ...|. ..++.+.++++++++. +
T Consensus 101 ~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~--~~~g~---~~~~~~~eil~~v~~~-----------~ 164 (334)
T PRK07565 101 DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDP--DISGA---EVEQRYLDILRAVKSA-----------V 164 (334)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCC--CCccc---cHHHHHHHHHHHHHhc-----------c
Confidence 4799999999999999999999976 7999999999977532 22232 2456678899999887 7
Q ss_pred CeeeEEeee--hhcHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 193 DINIGCPQM--VAKRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 193 ~~pvsvK~r--~~~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
++||++|++ +++..++++.+++ |+|+|++|+|+..
T Consensus 165 ~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~~~ 202 (334)
T PRK07565 165 SIPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRFYQ 202 (334)
T ss_pred CCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECCcCC
Confidence 899999999 4567899999999 9999999999743
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.5e-12 Score=113.66 Aligned_cols=148 Identities=14% Similarity=0.198 Sum_probs=97.6
Q ss_pred ccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccc-----------cCCCccc-
Q psy7344 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIA-----------EPHCDGI- 76 (240)
Q Consensus 9 ~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~l-----------ap~~~~~- 76 (240)
.+.+.++|.||||++||.. +.++++|+.|+++|+++.+++.++. +..+.|+++|..... ..-++++
T Consensus 121 ~~~~~gad~ielN~sCP~~-~~~~~~G~~l~~~~~~~~~iv~~v~-~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~ 198 (299)
T cd02940 121 LVEEAGADALELNFSCPHG-MPERGMGAAVGQDPELVEEICRWVR-EAVKIPVIAKLTPNITDIREIARAAKEGGADGVS 198 (299)
T ss_pred HHHhcCCCEEEEECCCCCC-CCCCCCchhhccCHHHHHHHHHHHH-HhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEE
Confidence 4455579999999999998 4556799999999999999999998 466899999843110 0011111
Q ss_pred -----------cccCchhhhhhhhcccce--ee-eCC----hhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc
Q psy7344 77 -----------DINIGCPQMVAKRGHYGA--YL-QDD----WPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP 138 (240)
Q Consensus 77 -----------dl~~gC~~~i~~~g~~ga--~l-~~d----~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~ 138 (240)
|+.-+ +.....|++++. +. ... |+.+.++...+. .+.|++.. +++.+..++.+++..
T Consensus 199 ~~Nt~~~~~~id~~~~-~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~-~~ipIig~---GGI~~~~da~~~l~a 273 (299)
T cd02940 199 AINTVNSLMGVDLDGT-PPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPE-PGLPISGI---GGIESWEDAAEFLLL 273 (299)
T ss_pred EecccccccccccccC-CccccccCCCCcCcccCCCcchHHHHHHHHHHHhcC-CCCcEEEE---CCCCCHHHHHHHHHc
Confidence 11111 000113444333 22 222 667777765542 13566654 899999999999999
Q ss_pred CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHH
Q psy7344 139 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176 (240)
Q Consensus 139 ~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~ 176 (240)
|+|+|++..+. +...|+.+.+|++.
T Consensus 274 GA~~V~i~ta~-------------~~~g~~~~~~i~~~ 298 (299)
T cd02940 274 GASVVQVCTAV-------------MNQGFTIVDDMCTG 298 (299)
T ss_pred CCChheEceee-------------cccCCcHHHHHhhh
Confidence 99999997772 33477788887754
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.2e-11 Score=113.26 Aligned_cols=134 Identities=15% Similarity=0.180 Sum_probs=88.0
Q ss_pred ccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccc-----------cCCCccc-
Q psy7344 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIA-----------EPHCDGI- 76 (240)
Q Consensus 9 ~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~l-----------ap~~~~~- 76 (240)
.+.+.++|.||||++||. ++.+++.|+.|+++|+++.+|+.++. +..+.|++||..-.. ...++.+
T Consensus 121 ~~~~~g~d~ielN~scP~-~~~~~~~g~~~~~~~~~~~~i~~~v~-~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~ 198 (420)
T PRK08318 121 LVEETGADGIELNFGCPH-GMSERGMGSAVGQVPELVEMYTRWVK-RGSRLPVIVKLTPNITDIREPARAAKRGGADAVS 198 (420)
T ss_pred HHHhcCCCEEEEeCCCCC-CccccCCcccccCCHHHHHHHHHHHH-hccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEE
Confidence 345567999999999999 67667899999999999999999998 466899999842110 0111111
Q ss_pred -----------cccCchhhhhhhhcccce--ee-eC----ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc
Q psy7344 77 -----------DINIGCPQMVAKRGHYGA--YL-QD----DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP 138 (240)
Q Consensus 77 -----------dl~~gC~~~i~~~g~~ga--~l-~~----d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~ 138 (240)
|+.-+ ...-.+|++++. +. .. .|+.|+++...+...+.|++.. +++.+..++.+++..
T Consensus 199 ~~Nt~~~~~~id~~~~-~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~---GGI~s~~da~e~i~a 274 (420)
T PRK08318 199 LINTINSITGVDLDRM-IPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGI---GGIETWRDAAEFILL 274 (420)
T ss_pred EecccCcccccccccc-CCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEee---cCcCCHHHHHHHHHh
Confidence 11100 000012443222 22 11 2677777665432113676654 899999999999999
Q ss_pred CCCEEEecCC
Q psy7344 139 HCDGIDINIG 148 (240)
Q Consensus 139 ~~d~Idin~g 148 (240)
|+|+|+|..+
T Consensus 275 GA~~Vqi~ta 284 (420)
T PRK08318 275 GAGTVQVCTA 284 (420)
T ss_pred CCChheeeee
Confidence 9999999877
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.1e-11 Score=105.14 Aligned_cols=138 Identities=10% Similarity=0.065 Sum_probs=92.4
Q ss_pred CCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCccccc-----cCchhhhhhh
Q psy7344 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDI-----NIGCPQMVAK 88 (240)
Q Consensus 14 ~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~dl-----~~gC~~~i~~ 88 (240)
++|.||||+|||..+ ++|+.|+++|+++.+++.++. +..+.|+++|.... ..+..++ ..| ...+++
T Consensus 118 ~~d~ielN~~cP~~~----~~g~~l~~~~~~~~eiv~~vr-~~~~~pv~vKi~~~---~~~~~~~a~~l~~~G-~d~i~v 188 (300)
T TIGR01037 118 YVDAYELNLSCPHVK----GGGIAIGQDPELSADVVKAVK-DKTDVPVFAKLSPN---VTDITEIAKAAEEAG-ADGLTL 188 (300)
T ss_pred ccCEEEEECCCCCCC----CCccccccCHHHHHHHHHHHH-HhcCCCEEEECCCC---hhhHHHHHHHHHHcC-CCEEEE
Confidence 489999999999964 589999999999999999999 45678999884311 1111111 233 233443
Q ss_pred hcccc------------------eee-eCCh----hhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEe
Q psy7344 89 RGHYG------------------AYL-QDDW----PLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDI 145 (240)
Q Consensus 89 ~g~~g------------------a~l-~~d~----eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idi 145 (240)
|+++. .+. ...| +.+.++...+ ..|++.. +++.+..++.++++.|+|+|++
T Consensus 189 ~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~---~ipvi~~---GGI~s~~da~~~l~~GAd~V~i 262 (300)
T TIGR01037 189 INTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV---DIPIIGV---GGITSFEDALEFLMAGASAVQV 262 (300)
T ss_pred EccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC---CCCEEEE---CCCCCHHHHHHHHHcCCCceee
Confidence 32211 111 1112 3444444332 3676654 8888888899999889999999
Q ss_pred cCCCchhhhhcccccccccCCHHHHHHHHHHhhhc
Q psy7344 146 NIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 146 n~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
+++ ++.+|+.+.++.+.+.+.
T Consensus 263 gr~--------------~l~~p~~~~~i~~~l~~~ 283 (300)
T TIGR01037 263 GTA--------------VYYRGFAFKKIIEGLIAF 283 (300)
T ss_pred cHH--------------HhcCchHHHHHHHHHHHH
Confidence 777 678999988888877653
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-09 Score=97.74 Aligned_cols=96 Identities=19% Similarity=0.244 Sum_probs=83.2
Q ss_pred CceeEEeecCCHHHHHHHHHHHcc-C-CCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLAEP-H-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~le~-~-~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
.+++.+..+...+.+.+.++.+++ + +|+|++|.+||+.. + |.++.+|||.+.++++++++. .
T Consensus 97 ~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~---g--~~~l~~~~e~l~~l~~~vk~~-----------~ 160 (310)
T COG0167 97 VNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTP---G--GRALGQDPELLEKLLEAVKAA-----------T 160 (310)
T ss_pred cceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCC---C--hhhhccCHHHHHHHHHHHHhc-----------c
Confidence 456666667788899999999976 5 79999999999942 2 677888999999999999998 7
Q ss_pred CeeeEEeee--hhcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 193 DINIGCPQM--VAKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 193 ~~pvsvK~r--~~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
++||.+|+. +++..++|+.+++ |+|+|++-.-+.
T Consensus 161 ~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~ 197 (310)
T COG0167 161 KVPVFVKLAPNITDIDEIAKAAEEAGADGLIAINTTK 197 (310)
T ss_pred cCceEEEeCCCHHHHHHHHHHHHHcCCcEEEEEeecc
Confidence 899999999 7788999999999 999999988665
|
|
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.9e-09 Score=96.38 Aligned_cols=103 Identities=9% Similarity=0.024 Sum_probs=80.1
Q ss_pred CCceeEEeecC-------CHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccC
Q psy7344 114 MCGHSLMFCGN-------DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAE 186 (240)
Q Consensus 114 ~~pvivqi~g~-------d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~ 186 (240)
..|+++++.++ ..+++.+.++.+.+.+|+|+||.+||+.. |...+.+++.+.++++++++.+..+.+
T Consensus 134 ~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~------~~~~~~~~~~~~~i~~~V~~~~~~~~~ 207 (335)
T TIGR01036 134 KGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTP------GLRDLQYKAELRDLLTAVKQEQDGLRR 207 (335)
T ss_pred CCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCC------CcccccCHHHHHHHHHHHHHHHHhhhh
Confidence 46899999766 46788888888877799999999999952 223458999999999999987210000
Q ss_pred CCCCCCCeeeEEeee--hh--cHHHHHHHHhC-CCCeEEEecccc
Q psy7344 187 PHCDGNDINIGCPQM--VA--KRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 187 ~~~~~~~~pvsvK~r--~~--~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
. .++||.+|+. ++ +..++++.+++ |+|+|++..++.
T Consensus 208 ~----~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~ 248 (335)
T TIGR01036 208 V----HRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTV 248 (335)
T ss_pred c----cCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCC
Confidence 0 1289999999 33 68899999999 999999998875
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.4e-09 Score=94.32 Aligned_cols=94 Identities=12% Similarity=0.147 Sum_probs=74.9
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-C-CCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-H-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~-~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
+.|+|++|.|.+++++.+.++.+++ + +|+|+||++||+.. + +..+..|++.+.++++++++.
T Consensus 92 ~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~---~--~~~~g~d~~~~~~i~~~v~~~----------- 155 (310)
T PRK02506 92 NKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVP---G--KPQIAYDFETTEQILEEVFTY----------- 155 (310)
T ss_pred CCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCC---C--ccccccCHHHHHHHHHHHHHh-----------
Confidence 4799999999999999999999976 5 89999999999942 1 344567999999999999998
Q ss_pred CCeeeEEeeeh-hcHHHHHHHH---hC-CCCeEEEec
Q psy7344 192 NDINIGCPQMV-AKRGHYGAYL---QD-DWPLLTELG 223 (240)
Q Consensus 192 ~~~pvsvK~r~-~~~~~~~~~l---~~-G~~~itih~ 223 (240)
+++||.+|+.. .+..++++.+ .. |+++|+.-.
T Consensus 156 ~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~n 192 (310)
T PRK02506 156 FTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCIN 192 (310)
T ss_pred cCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEec
Confidence 78899999992 2445555554 45 777765544
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.8e-10 Score=100.37 Aligned_cols=130 Identities=13% Similarity=0.064 Sum_probs=93.3
Q ss_pred ecccccccCCCccccccCchhhhhhhhcccceeeeCChhhHHHhhhcccCCCCceeEEeec--CCHHHHHHHHHHHcc-C
Q psy7344 63 MGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCG--NDSKNLTEAAKLAEP-H 139 (240)
Q Consensus 63 vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi~g--~d~~~~~~aa~~le~-~ 139 (240)
+....+++||.+++|.+|+ ..+...|.-|. .....+..+ .....|+.+||++ ++++. .++++.+++ +
T Consensus 43 l~~PivlAPMagVtd~~fr--~~~~~~Galgv--vsaegl~~~-----~~~~~~~~~QI~g~~~~~~~-a~aa~~~~e~~ 112 (369)
T TIGR01304 43 FELPFIAHPMDALVSPEFA--IELGELGGLGV--LNLEGLWGR-----HEDPDPAIAKIAEAYEEGDQ-AAATRLLQELH 112 (369)
T ss_pred cCCceeecCCCcccCHHHH--HHHHHcCCccc--ccchHHHhc-----CCCHHHHHHHHhhcCCChHH-HHHHHHHHHcC
Confidence 3445688999999999997 55555443222 111111111 1112467789987 56666 778888866 2
Q ss_pred CCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehh--cHHHHHHHHhC-CC
Q psy7344 140 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVA--KRGHYGAYLQD-DW 216 (240)
Q Consensus 140 ~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~--~~~~~~~~l~~-G~ 216 (240)
.+. .+|+++.+++++++++ .|++|+|+. .+.++++.+++ |+
T Consensus 113 ~~~----------------------~~p~l~~~ii~~vr~a--------------~VtvkiRl~~~~~~e~a~~l~eAGa 156 (369)
T TIGR01304 113 AAP----------------------LKPELLGERIAEVRDS--------------GVITAVRVSPQNAREIAPIVVKAGA 156 (369)
T ss_pred CCc----------------------cChHHHHHHHHHHHhc--------------ceEEEEecCCcCHHHHHHHHHHCCC
Confidence 111 4899999999999887 399999963 68899999999 99
Q ss_pred CeEEEecccccccCCCCCCCCCC
Q psy7344 217 PLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 217 ~~itih~R~~~~~~~~~~~adw~ 239 (240)
|.|++|+||+.|.| +++.++|.
T Consensus 157 d~I~ihgrt~~q~~-~sg~~~p~ 178 (369)
T TIGR01304 157 DLLVIQGTLVSAEH-VSTSGEPL 178 (369)
T ss_pred CEEEEeccchhhhc-cCCCCCHH
Confidence 99999999999997 46778885
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.7e-08 Score=89.69 Aligned_cols=96 Identities=18% Similarity=0.168 Sum_probs=74.6
Q ss_pred CCceeEEeecCC---HHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCC
Q psy7344 114 MCGHSLMFCGND---SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCD 190 (240)
Q Consensus 114 ~~pvivqi~g~d---~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~ 190 (240)
..|+++++.+.+ .+++.+.++.++.++|+++||.+||+.. .+..+..+++...++++.+++.
T Consensus 96 ~~pvi~Si~~~~~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~-----~~~~~~~~~~~~~~i~~~v~~~---------- 160 (295)
T PF01180_consen 96 DIPVIASINGDSEEEIEDWAELAKRLEAGADALELNLSCPNVP-----GGRPFGQDPELVAEIVRAVREA---------- 160 (295)
T ss_dssp CEEEEEEE-TSSSGHHHHHHHHHHHHHHHCSEEEEESTSTTST-----TSGGGGGHHHHHHHHHHHHHHH----------
T ss_pred ceeEEEEeecCCchhHHHHHHHHHHhcCcCCceEEEeeccCCC-----CccccccCHHHHHHHHHHHHhc----------
Confidence 469999998888 8899999999998899999999999874 2334557899999999999987
Q ss_pred CCCeeeEEeeeh--hcH--HHHHHHHhC-CCCeEEEeccc
Q psy7344 191 GNDINIGCPQMV--AKR--GHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 191 ~~~~pvsvK~r~--~~~--~~~~~~l~~-G~~~itih~R~ 225 (240)
.++||.+|+.. .+. ...+..+.+ |+++|++-.++
T Consensus 161 -~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~ 199 (295)
T PF01180_consen 161 -VDIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTF 199 (295)
T ss_dssp -HSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---E
T ss_pred -cCCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCc
Confidence 78999999994 443 455666678 99999965554
|
DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A .... |
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.7e-08 Score=86.42 Aligned_cols=172 Identities=15% Similarity=0.044 Sum_probs=104.1
Q ss_pred cccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeeccccc--------ccCCCcccccc
Q psy7344 8 RIETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFI--------AEPHCDGIDIN 79 (240)
Q Consensus 8 ~~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~--------lap~~~~~dl~ 79 (240)
|+-++.|++.|++|.|||+.+++++ |.++|++|+++. ++. +..+.|++.+.+.- .+-.+|++|-.
T Consensus 31 ~iae~~g~~~v~~~~~~psd~~~~g--g~~Rm~~p~~I~----aIk-~~V~iPVigk~Righ~~Ea~~L~~~GvDiID~T 103 (293)
T PRK04180 31 KIAEEAGAVAVMALERVPADIRAAG--GVARMADPKMIE----EIM-DAVSIPVMAKARIGHFVEAQILEALGVDYIDES 103 (293)
T ss_pred HHHHHhChHHHHHccCCCchHhhcC--CeeecCCHHHHH----HHH-HhCCCCeEEeehhhHHHHHHHHHHcCCCEEecc
Confidence 5667788999999999999999987 999999999966 556 46789999765421 11122333211
Q ss_pred CchhhhhhhhcccceeeeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEec----CCCchhhhh
Q psy7344 80 IGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDIN----IGCPQMVAK 155 (240)
Q Consensus 80 ~gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin----~gCP~~~~~ 155 (240)
.+ +.-..+++..++... ..|+. .|..++.++.+.++.|+|.|-.- .| ....+.
T Consensus 104 e~--------------lrpad~~~~~~K~~f---~~~fm-----ad~~~l~EAlrai~~GadmI~Ttge~gtg-~v~~av 160 (293)
T PRK04180 104 EV--------------LTPADEEYHIDKWDF---TVPFV-----CGARNLGEALRRIAEGAAMIRTKGEAGTG-NVVEAV 160 (293)
T ss_pred CC--------------CCchHHHHHHHHHHc---CCCEE-----ccCCCHHHHHHHHHCCCCeeeccCCCCCc-cHHHHH
Confidence 10 000124444444332 24544 45666777888888877776543 11 000000
Q ss_pred c------------ccc--------cccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeE--EeeehhcHHHHHHHHh
Q psy7344 156 R------------GHY--------GAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIG--CPQMVAKRGHYGAYLQ 213 (240)
Q Consensus 156 ~------------~g~--------G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvs--vK~r~~~~~~~~~~l~ 213 (240)
+ .|| ......+++.++++.+. .++||. +-..+.+..+..+.++
T Consensus 161 ~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~---------------~~iPVV~~AeGGI~TPedaa~vme 225 (293)
T PRK04180 161 RHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAEL---------------GRLPVVNFAAGGIATPADAALMMQ 225 (293)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHh---------------CCCCEEEEEeCCCCCHHHHHHHHH
Confidence 0 000 00134678888777764 456775 6666766777777775
Q ss_pred CCCCeEEEeccc
Q psy7344 214 DDWPLLTELGKM 225 (240)
Q Consensus 214 ~G~~~itih~R~ 225 (240)
.|++++.+ ++.
T Consensus 226 ~GAdgVaV-GSa 236 (293)
T PRK04180 226 LGADGVFV-GSG 236 (293)
T ss_pred hCCCEEEE-cHH
Confidence 59999988 543
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.4e-08 Score=90.16 Aligned_cols=145 Identities=13% Similarity=0.136 Sum_probs=92.2
Q ss_pred ccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccc-----------cCCCcccc
Q psy7344 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIA-----------EPHCDGID 77 (240)
Q Consensus 9 ~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~l-----------ap~~~~~d 77 (240)
.+.+.++|.|+||++||..+ +.|+.++++|+++.+++.++. +..+.|+++|..... .--++.++
T Consensus 110 ~~~~~G~d~iElN~~cP~~~----~~g~~~~~~~~~~~eiv~~vr-~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~ 184 (296)
T cd04740 110 KLADAGADAIELNISCPNVK----GGGMAFGTDPEAVAEIVKAVK-KATDVPVIVKLTPNVTDIVEIARAAEEAGADGLT 184 (296)
T ss_pred HHHHcCCCEEEEECCCCCCC----CCcccccCCHHHHHHHHHHHH-hccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEE
Confidence 34556799999999999852 348999999999999999999 455889998732100 01112221
Q ss_pred c-c--Cchhhhhhh-------hcccceee-eC----ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCE
Q psy7344 78 I-N--IGCPQMVAK-------RGHYGAYL-QD----DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDG 142 (240)
Q Consensus 78 l-~--~gC~~~i~~-------~g~~ga~l-~~----d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~ 142 (240)
+ | .| ..+.. ...+|.+. .. .+++++++...+ +.|++.. +++.+..++.++++.|+|+
T Consensus 185 ~~nt~~g--~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~---~ipii~~---GGI~~~~da~~~l~~GAd~ 256 (296)
T cd04740 185 LINTLKG--MAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV---EIPIIGV---GGIASGEDALEFLMAGASA 256 (296)
T ss_pred EECCCcc--cccccccCceeecCCcceecCcccchHHHHHHHHHHHhc---CCCEEEE---CCCCCHHHHHHHHHcCCCE
Confidence 1 1 00 00000 00011111 11 235566655433 3676654 7777778888998889999
Q ss_pred EEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc
Q psy7344 143 IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 143 Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
|++.++ ++.+|+.+.++.+.+.+-
T Consensus 257 V~igra--------------~l~~p~~~~~i~~~l~~~ 280 (296)
T cd04740 257 VQVGTA--------------NFVDPEAFKEIIEGLEAY 280 (296)
T ss_pred EEEchh--------------hhcChHHHHHHHHHHHHH
Confidence 999776 566999999998877653
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.9e-08 Score=89.64 Aligned_cols=146 Identities=14% Similarity=0.112 Sum_probs=91.7
Q ss_pred ccccCC-CCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccc-----------cCCCccc
Q psy7344 9 IETEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIA-----------EPHCDGI 76 (240)
Q Consensus 9 ~~~~~~-~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~l-----------ap~~~~~ 76 (240)
.+.+.+ +|.|+||++||+.. + .|..+.++++++.+++.++. +..+.|+++|..... +-.++.+
T Consensus 112 ~~~~aG~~D~iElN~~cP~~~---~-gg~~~~~~~~~~~eiv~~vr-~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i 186 (301)
T PRK07259 112 KLSKAPNVDAIELNISCPNVK---H-GGMAFGTDPELAYEVVKAVK-EVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGL 186 (301)
T ss_pred HHhccCCcCEEEEECCCCCCC---C-CccccccCHHHHHHHHHHHH-HhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEE
Confidence 345566 99999999999842 2 37889999999999999999 466889998742110 0112222
Q ss_pred cc-cCchhhhhhhh-------ccccee----e-eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEE
Q psy7344 77 DI-NIGCPQMVAKR-------GHYGAY----L-QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGI 143 (240)
Q Consensus 77 dl-~~gC~~~i~~~-------g~~ga~----l-~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~I 143 (240)
++ |.-....+..+ ..+|.+ + ...++++.++...+ +.|++.. +++.+..++.++++.|+|.|
T Consensus 187 ~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~---~ipvi~~---GGI~~~~da~~~l~aGAd~V 260 (301)
T PRK07259 187 SLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV---DIPIIGM---GGISSAEDAIEFIMAGASAV 260 (301)
T ss_pred EEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhC---CCCEEEE---CCCCCHHHHHHHHHcCCCce
Confidence 11 10000000000 001111 1 11345666655443 4677655 77778888888888899999
Q ss_pred EecCCCchhhhhcccccccccCCHHHHHHHHHHhhh
Q psy7344 144 DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM 179 (240)
Q Consensus 144 din~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~ 179 (240)
++.++ ++.+|+.+.++.+.+..
T Consensus 261 ~igr~--------------ll~~P~~~~~i~~~l~~ 282 (301)
T PRK07259 261 QVGTA--------------NFYDPYAFPKIIEGLEA 282 (301)
T ss_pred eEcHH--------------HhcCcHHHHHHHHHHHH
Confidence 99766 56799999999887754
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=98.69 E-value=7e-08 Score=86.08 Aligned_cols=97 Identities=8% Similarity=-0.030 Sum_probs=73.7
Q ss_pred CceeEEeecC-CHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 115 CGHSLMFCGN-DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 115 ~pvivqi~g~-d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
.|+.+|+.+. |++.+.++++.+++ ++++|++|++||+.... ..|+.++++ ++. +
T Consensus 116 ~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~---------~~~~~i~~l----~~~-----------~ 171 (299)
T cd02809 116 GPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR---------LTWDDLAWL----RSQ-----------W 171 (299)
T ss_pred CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC---------CCHHHHHHH----HHh-----------c
Confidence 6899999876 89988888888765 89999999999974211 356555444 444 5
Q ss_pred CeeeEEeeehhcHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 193 DINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 193 ~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
++||++|.. .+.+.++.+++ |+|+|++|++...|.+ .+.++|+
T Consensus 172 ~~pvivK~v--~s~~~a~~a~~~G~d~I~v~~~gG~~~~--~g~~~~~ 215 (299)
T cd02809 172 KGPLILKGI--LTPEDALRAVDAGADGIVVSNHGGRQLD--GAPATID 215 (299)
T ss_pred CCCEEEeec--CCHHHHHHHHHCCCCEEEEcCCCCCCCC--CCcCHHH
Confidence 789999975 33567899999 9999999998877763 4666663
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.8e-08 Score=86.45 Aligned_cols=141 Identities=6% Similarity=0.004 Sum_probs=86.4
Q ss_pred CCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeeccccccc--CCCccccc--cC--chhhhhh
Q psy7344 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAE--PHCDGIDI--NI--GCPQMVA 87 (240)
Q Consensus 14 ~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~la--p~~~~~dl--~~--gC~~~i~ 87 (240)
++|.||||++||+.. + +..+.+||+++.+++.++. +..+.|+++|..-... ......+. .. | ...++
T Consensus 119 ~ad~ielN~sCPn~~----~-~~~~~~~~~~~~~i~~~v~-~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G-~~gi~ 191 (294)
T cd04741 119 FPLAMELNLSCPNVP----G-KPPPAYDFDATLEYLTAVK-AAYSIPVGVKTPPYTDPAQFDTLAEALNAFACP-ISFIT 191 (294)
T ss_pred cccEEEEECCCCCCC----C-cccccCCHHHHHHHHHHHH-HhcCCCEEEEeCCCCCHHHHHHHHHHHhccccC-CcEEE
Confidence 589999999999942 1 1247789999999999999 4678999998431110 00000000 11 1 01111
Q ss_pred ----------hhc-----------ccceee--eCC---hhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCC
Q psy7344 88 ----------KRG-----------HYGAYL--QDD---WPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCD 141 (240)
Q Consensus 88 ----------~~g-----------~~ga~l--~~d---~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d 141 (240)
+|. +||-+. .-+ +..++++...+. .+.|++.. +++.+..++.+++..|+|
T Consensus 192 ~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~-~~ipIig~---GGI~s~~da~e~l~aGA~ 267 (294)
T cd04741 192 ATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLP-SEIQIIGV---GGVLDGRGAFRMRLAGAS 267 (294)
T ss_pred EEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcC-CCCCEEEe---CCCCCHHHHHHHHHcCCC
Confidence 111 111111 001 233344433331 13676655 899999999999999999
Q ss_pred EEEecCCCchhhhhccccccccc-CCHHHHHHHHHHhhh
Q psy7344 142 GIDINIGCPQMVAKRGHYGAYLQ-DDWPLLTNLVYSPNM 179 (240)
Q Consensus 142 ~Idin~gCP~~~~~~~g~G~~l~-~~p~~i~~iv~~~~~ 179 (240)
+|++..+ ++ .+|+.+.+|.+.+++
T Consensus 268 ~Vqv~ta--------------~~~~gp~~~~~i~~~L~~ 292 (294)
T cd04741 268 AVQVGTA--------------LGKEGPKVFARIEKELED 292 (294)
T ss_pred ceeEchh--------------hhhcCchHHHHHHHHHHh
Confidence 9999766 33 589999999887754
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.65 E-value=1e-07 Score=86.37 Aligned_cols=93 Identities=18% Similarity=0.197 Sum_probs=72.7
Q ss_pred HHHHHHHHHHc-cCCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAE-PHCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le-~~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+++.++|+.+. .|+|+|+||.|| |........+|+.|..++..+.++++++++.+ |.++||
T Consensus 154 ~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~v---------G~d~~v 224 (336)
T cd02932 154 DAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVW---------PEDKPL 224 (336)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHc---------CCCceE
Confidence 45667777764 489999999998 54333445678889999999999999999982 137899
Q ss_pred EEeee----------hhcHHHHHHHHhC-CCCeEEEe--cccccc
Q psy7344 197 GCPQM----------VAKRGHYGAYLQD-DWPLLTEL--GKMAML 228 (240)
Q Consensus 197 svK~r----------~~~~~~~~~~l~~-G~~~itih--~R~~~~ 228 (240)
++|++ .+++.++++.|++ |+|+|.+| +++..+
T Consensus 225 ~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~ 269 (336)
T cd02932 225 FVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQ 269 (336)
T ss_pred EEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCccc
Confidence 99988 2356789999999 99999998 455544
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.6e-07 Score=87.06 Aligned_cols=103 Identities=9% Similarity=-0.042 Sum_probs=78.1
Q ss_pred ceeEEeecC-----CHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCC
Q psy7344 116 GHSLMFCGN-----DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCD 190 (240)
Q Consensus 116 pvivqi~g~-----d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~ 190 (240)
|++++|+++ .++++.+.++.+...+|+|+||.+||+.. +. ..+.+++.+.++++++++....+.+. .
T Consensus 188 ~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~aDylelNiScPNtp----gl--r~lq~~~~l~~ll~~V~~~~~~~~~~--~ 259 (409)
T PLN02826 188 ILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVINVSSPNTP----GL--RKLQGRKQLKDLLKKVLAARDEMQWG--E 259 (409)
T ss_pred eEEEEeccCCCCcccHHHHHHHHHHHhhhCCEEEEECCCCCCC----Cc--ccccChHHHHHHHHHHHHHHHHhhhc--c
Confidence 899999776 57888888888887899999999999952 22 23578999999999887541111000 0
Q ss_pred CCCeeeEEeee--hh--cHHHHHHHHhC-CCCeEEEecccc
Q psy7344 191 GNDINIGCPQM--VA--KRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 191 ~~~~pvsvK~r--~~--~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
..++||.+|+. ++ +..++++.+++ |+|+|++-.+|.
T Consensus 260 ~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~ 300 (409)
T PLN02826 260 EGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTI 300 (409)
T ss_pred ccCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence 13589999997 33 57889999999 999999988764
|
|
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.8e-08 Score=86.53 Aligned_cols=97 Identities=19% Similarity=0.195 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHcc-CCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCe
Q psy7344 125 DSKNLTEAAKLAEP-HCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDI 194 (240)
Q Consensus 125 d~~~~~~aa~~le~-~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~ 194 (240)
.++++.++|+.+.+ |+|+|+||.|| |..-.....||..|..++..+.++++++++++ +.++
T Consensus 147 ~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~av---------G~d~ 217 (338)
T cd04733 147 VIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAV---------GPGF 217 (338)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHc---------CCCC
Confidence 45667788888755 89999999998 65322334567779899999999999999983 2368
Q ss_pred eeEEeee----------hhcHHHHHHHHhC-CCCeEEEecccccccC
Q psy7344 195 NIGCPQM----------VAKRGHYGAYLQD-DWPLLTELGKMAMLVG 230 (240)
Q Consensus 195 pvsvK~r----------~~~~~~~~~~l~~-G~~~itih~R~~~~~~ 230 (240)
||.+|+. .+++.++++.|++ |+|+|.||+|+..+..
T Consensus 218 ~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~ 264 (338)
T cd04733 218 PVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPA 264 (338)
T ss_pred eEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCcc
Confidence 9999996 2456789999999 9999999999876653
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.8e-08 Score=89.01 Aligned_cols=142 Identities=10% Similarity=0.084 Sum_probs=87.7
Q ss_pred ccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeeccccccc--CCCcccc--ccCchhh
Q psy7344 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAE--PHCDGID--INIGCPQ 84 (240)
Q Consensus 9 ~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~la--p~~~~~d--l~~gC~~ 84 (240)
.+.+.++|.|+||++||.... +..++++++++.+++.++. +..+.|+++|...... ......+ ...| ..
T Consensus 119 ~~~~~G~d~ielN~~cP~~~~-----~~~~~~~~~~~~eiv~~vr-~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~G-ad 191 (289)
T cd02810 119 KIERAGAKALELNLSCPNVGG-----GRQLGQDPEAVANLLKAVK-AAVDIPLLVKLSPYFDLEDIVELAKAAERAG-AD 191 (289)
T ss_pred HHHHhCCCEEEEEcCCCCCCC-----CcccccCHHHHHHHHHHHH-HccCCCEEEEeCCCCCHHHHHHHHHHHHHcC-CC
Confidence 344557999999999998543 3338899999999999999 4568899987432111 0000000 1233 23
Q ss_pred hhhhhcccce-----------------eee------CChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCC
Q psy7344 85 MVAKRGHYGA-----------------YLQ------DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCD 141 (240)
Q Consensus 85 ~i~~~g~~ga-----------------~l~------~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d 141 (240)
.++.++++.. .+. ..+++++++...+. .+.|++.. +++.+..++.+++..|+|
T Consensus 192 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~-~~ipiia~---GGI~~~~da~~~l~~GAd 267 (289)
T cd02810 192 GLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQ-LDIPIIGV---GGIDSGEDVLEMLMAGAS 267 (289)
T ss_pred EEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcC-CCCCEEEE---CCCCCHHHHHHHHHcCcc
Confidence 3333332211 000 01344555544331 13666654 778888888899888999
Q ss_pred EEEecCCCchhhhhcccccccccCC-HHHHHHHHH
Q psy7344 142 GIDINIGCPQMVAKRGHYGAYLQDD-WPLLTNLVY 175 (240)
Q Consensus 142 ~Idin~gCP~~~~~~~g~G~~l~~~-p~~i~~iv~ 175 (240)
+|+++++ ++.| |+.+.++.+
T Consensus 268 ~V~vg~a--------------~~~~GP~~~~~i~~ 288 (289)
T cd02810 268 AVQVATA--------------LMWDGPDVIRKIKK 288 (289)
T ss_pred HheEcHH--------------HHhcCccHHHHHhc
Confidence 9988666 6678 998888764
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-07 Score=86.37 Aligned_cols=89 Identities=16% Similarity=0.187 Sum_probs=71.9
Q ss_pred HHHHHHHHHHcc-CCCEEEecCC---------CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~g---------CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+.+.++|+.+.+ |+|+|+||.| ||..-.....||..|......+.+|++++++. .+.||
T Consensus 142 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~-----------~~~~v 210 (337)
T PRK13523 142 LAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEV-----------WDGPL 210 (337)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHh-----------cCCCe
Confidence 456667777755 8999999999 78653344556767888888999999999998 56799
Q ss_pred EEeeeh----------hcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 197 GCPQMV----------AKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 197 svK~r~----------~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
++|++. ++..++++.|++ |+|+|+||+++.
T Consensus 211 ~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~ 251 (337)
T PRK13523 211 FVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAV 251 (337)
T ss_pred EEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCC
Confidence 999993 346789999999 999999999984
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.7e-07 Score=84.85 Aligned_cols=144 Identities=10% Similarity=0.020 Sum_probs=91.5
Q ss_pred cccccccCCCccccccCch----hhhhhhhc---ccceee--eCChhhHHHhhhcccC--CCCceeEEeecC-----CHH
Q psy7344 64 GPLFIAEPHCDGIDINIGC----PQMVAKRG---HYGAYL--QDDWPLLTELGFKTRS--HMCGHSLMFCGN-----DSK 127 (240)
Q Consensus 64 k~~~~lap~~~~~dl~~gC----~~~i~~~g---~~ga~l--~~d~eli~~i~~~~~~--~~~pvivqi~g~-----d~~ 127 (240)
+.+.+++||.+..+....- .......| .+|+.- ..+++..... ..++. .+.|++++++.. +++
T Consensus 53 ~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~~~ 131 (333)
T TIGR02151 53 KAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAALKDPETADTF-EVVREEAPNGPLIANIGAPQLVEGGPE 131 (333)
T ss_pred cCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhhHhHH-HHHHHhCCCCcEEeecCchhhccccHH
Confidence 3456778888777442210 11112223 233311 2356655443 22221 357999988643 234
Q ss_pred HHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee-hhcHH
Q psy7344 128 NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-VAKRG 206 (240)
Q Consensus 128 ~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-~~~~~ 206 (240)
+..++++++ .+|+++||+.|++......+. .+++...+.++.+++. +++||.+|.. ...+.
T Consensus 132 ~~~~~i~~i--~adal~i~ln~~q~~~~p~g~-----~~f~~~le~i~~i~~~-----------~~vPVivK~~g~g~~~ 193 (333)
T TIGR02151 132 EAQEAIDMI--EADALAIHLNVLQELVQPEGD-----RNFKGWLEKIAEICSQ-----------LSVPVIVKEVGFGISK 193 (333)
T ss_pred HHHHHHHHh--cCCCEEEcCcccccccCCCCC-----cCHHHHHHHHHHHHHh-----------cCCCEEEEecCCCCCH
Confidence 455555555 578999999999877666654 3455555677777776 6889999987 44568
Q ss_pred HHHHHHhC-CCCeEEEecccc
Q psy7344 207 HYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 207 ~~~~~l~~-G~~~itih~R~~ 226 (240)
+.++.|++ |+|+|++|||..
T Consensus 194 ~~a~~L~~aGvd~I~Vsg~gG 214 (333)
T TIGR02151 194 EVAKLLADAGVSAIDVAGAGG 214 (333)
T ss_pred HHHHHHHHcCCCEEEECCCCC
Confidence 99999999 999999999864
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3e-07 Score=83.85 Aligned_cols=144 Identities=10% Similarity=0.019 Sum_probs=93.0
Q ss_pred cccccccCCCccccccCch----hhhhhhhc---ccceee--eCChhhHHHhhhcccC--CCCceeEEeecC-----CHH
Q psy7344 64 GPLFIAEPHCDGIDINIGC----PQMVAKRG---HYGAYL--QDDWPLLTELGFKTRS--HMCGHSLMFCGN-----DSK 127 (240)
Q Consensus 64 k~~~~lap~~~~~dl~~gC----~~~i~~~g---~~ga~l--~~d~eli~~i~~~~~~--~~~pvivqi~g~-----d~~ 127 (240)
+.+.+++||.++.+....- .......| .+|+.- ..+++ +.+-...++. .+.|++++|+.. +++
T Consensus 60 ~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~ 138 (352)
T PRK05437 60 SAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDPE-LADSFSVVRKVAPDGLLFANLGAVQLYGYGVE 138 (352)
T ss_pred cCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccChh-hHHHHHHHHHHCCCceEEeecCccccCCCCHH
Confidence 3456778898877532211 11223333 344421 23466 3332222222 257999988653 345
Q ss_pred HHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee-hhcHH
Q psy7344 128 NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-VAKRG 206 (240)
Q Consensus 128 ~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-~~~~~ 206 (240)
...++++++ ++|+++||++|++......+. .+++.+.+.++++++. +++||.+|+. ...+.
T Consensus 139 ~~~~~~~~~--~adal~l~l~~~qe~~~p~g~-----~~f~~~le~i~~i~~~-----------~~vPVivK~~g~g~s~ 200 (352)
T PRK05437 139 EAQRAVEMI--EADALQIHLNPLQELVQPEGD-----RDFRGWLDNIAEIVSA-----------LPVPVIVKEVGFGISK 200 (352)
T ss_pred HHHHHHHhc--CCCcEEEeCccchhhcCCCCc-----ccHHHHHHHHHHHHHh-----------hCCCEEEEeCCCCCcH
Confidence 555555554 579999999998876665543 4676666777877776 6889999998 44557
Q ss_pred HHHHHHhC-CCCeEEEecccc
Q psy7344 207 HYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 207 ~~~~~l~~-G~~~itih~R~~ 226 (240)
+.++.+++ |+|+|.++|+..
T Consensus 201 ~~a~~l~~~Gvd~I~Vsg~GG 221 (352)
T PRK05437 201 ETAKRLADAGVKAIDVAGAGG 221 (352)
T ss_pred HHHHHHHHcCCCEEEECCCCC
Confidence 99999999 999999999853
|
|
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.7e-07 Score=82.97 Aligned_cols=95 Identities=19% Similarity=0.232 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHcc-CCCEEEecCC---------CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 126 SKNLTEAAKLAEP-HCDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 126 ~~~~~~aa~~le~-~~d~Idin~g---------CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++++.++|+.+.+ |+|+|+||.+ ||..-.....+|+.+..++..+.++++++++.+ +.++|
T Consensus 140 i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~---------g~d~~ 210 (327)
T cd02803 140 IEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAV---------GPDFP 210 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHc---------CCCce
Confidence 3456677777654 8999999999 554323344577778888899999999999972 13789
Q ss_pred eEEeeeh----------hcHHHHHHHHhC-CCCeEEEeccccccc
Q psy7344 196 IGCPQMV----------AKRGHYGAYLQD-DWPLLTELGKMAMLV 229 (240)
Q Consensus 196 vsvK~r~----------~~~~~~~~~l~~-G~~~itih~R~~~~~ 229 (240)
|.+|++. +++.++++.|++ |+|+|.+|+++..+.
T Consensus 211 i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~ 255 (327)
T cd02803 211 VGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESP 255 (327)
T ss_pred EEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCccc
Confidence 9999992 346788999999 999999999997764
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.7e-07 Score=83.88 Aligned_cols=88 Identities=14% Similarity=0.195 Sum_probs=66.1
Q ss_pred HHHHHHHHHHcc-CCCEEEecC--CC-------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINI--GC-------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~--gC-------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+++.++|+.+.+ |+|+||||. || |..-.....||+++..+...+.+|++++++. +..++
T Consensus 141 ~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~-----------vg~~~ 209 (343)
T cd04734 141 AAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAA-----------VGPDF 209 (343)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHH-----------cCCCC
Confidence 456777777654 899999999 65 4333233568888988999999999999998 44455
Q ss_pred EEeeeh------------hcHHHHHHHHhC-C-CCeEEEeccc
Q psy7344 197 GCPQMV------------AKRGHYGAYLQD-D-WPLLTELGKM 225 (240)
Q Consensus 197 svK~r~------------~~~~~~~~~l~~-G-~~~itih~R~ 225 (240)
++|+|+ +++.++++.|++ | +|+|+||+++
T Consensus 210 ~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~ 252 (343)
T cd04734 210 IVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGS 252 (343)
T ss_pred eEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCC
Confidence 555552 246789999999 9 8999996544
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.6e-07 Score=82.51 Aligned_cols=94 Identities=17% Similarity=0.210 Sum_probs=72.2
Q ss_pred HHHHHHHHHHcc-CCCEEEecC---CCc-------hhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINI---GCP-------QMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~---gCP-------~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
+++.++|+++.+ |+|||+|+. ||. ..-.....||+.|......+.+|++++++.+ +.++|
T Consensus 150 ~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~---------g~~f~ 220 (382)
T cd02931 150 GKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARC---------GEDFP 220 (382)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhc---------CCCce
Confidence 456777887765 899999998 873 1111223477788889999999999999972 13689
Q ss_pred eEEeeeh------------------------hcHHHHHHHHhC-CCCeEEEeccccccc
Q psy7344 196 IGCPQMV------------------------AKRGHYGAYLQD-DWPLLTELGKMAMLV 229 (240)
Q Consensus 196 vsvK~r~------------------------~~~~~~~~~l~~-G~~~itih~R~~~~~ 229 (240)
|++|++. +++.++++.|++ |+|+|.+|+++..+.
T Consensus 221 v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~ 279 (382)
T cd02931 221 VSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAW 279 (382)
T ss_pred EEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCccc
Confidence 9999982 345689999999 999999999986553
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.7e-07 Score=89.75 Aligned_cols=93 Identities=12% Similarity=0.148 Sum_probs=73.8
Q ss_pred HHHHHHHHHHcc-CCCEEEecCC---------CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~g---------CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+++.++|+.+.+ |+|+||||+| ||........||..+......+.+|++++++++ +.++||
T Consensus 551 ~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~---------~~~~~v 621 (765)
T PRK08255 551 DDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVW---------PAEKPM 621 (765)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhc---------CCCCee
Confidence 346667777644 8999999999 998655556688888788888999999999973 246899
Q ss_pred EEeeeh----------hcHHHHHHHHhC-CCCeEEEe-cccccc
Q psy7344 197 GCPQMV----------AKRGHYGAYLQD-DWPLLTEL-GKMAML 228 (240)
Q Consensus 197 svK~r~----------~~~~~~~~~l~~-G~~~itih-~R~~~~ 228 (240)
++|++. +++.++++.|++ |+|.|+|| ||+..+
T Consensus 622 ~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~ 665 (765)
T PRK08255 622 SVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKD 665 (765)
T ss_pred EEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcC
Confidence 999992 356789999999 99999999 566543
|
|
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=98.39 E-value=8e-08 Score=87.39 Aligned_cols=142 Identities=15% Similarity=0.047 Sum_probs=88.8
Q ss_pred CCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCC-----Cceeeccccccc--CCCcccc--ccCchh
Q psy7344 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKN-----GPLFMGPLFIAE--PHCDGID--INIGCP 83 (240)
Q Consensus 13 ~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~-----~p~~vk~~~~la--p~~~~~d--l~~gC~ 83 (240)
.++|.|+||++||..+ |...+++++.+.+++.++. +..+ .|+++|-.-... ....... ...| .
T Consensus 168 ~~ad~lelN~scP~~~------g~~~~~~~~~~~eiv~aVr-~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~G-a 239 (344)
T PRK05286 168 PYADYFTVNISSPNTP------GLRDLQYGEALDELLAALK-EAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHG-I 239 (344)
T ss_pred hhCCEEEEEccCCCCC------CcccccCHHHHHHHHHHHH-HHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhC-C
Confidence 3589999999999865 2334899999999999998 4555 899988431110 0000000 1233 2
Q ss_pred hhhhhhcccc---------------eee-----eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEE
Q psy7344 84 QMVAKRGHYG---------------AYL-----QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGI 143 (240)
Q Consensus 84 ~~i~~~g~~g---------------a~l-----~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~I 143 (240)
+.++.++++. .+. ...++.++.+...+. .+.|++.. +++.+..++.+++..|+|.|
T Consensus 240 dgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~-~~ipIig~---GGI~s~eda~e~l~aGAd~V 315 (344)
T PRK05286 240 DGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELG-GRLPIIGV---GGIDSAEDAYEKIRAGASLV 315 (344)
T ss_pred cEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhC-CCCCEEEE---CCCCCHHHHHHHHHcCCCHH
Confidence 3444444321 111 012445555554432 13576654 88888889999998889998
Q ss_pred EecCCCchhhhhcccccccccC-CHHHHHHHHHHhhhc
Q psy7344 144 DINIGCPQMVAKRGHYGAYLQD-DWPLLTNLVYSPNMV 180 (240)
Q Consensus 144 din~gCP~~~~~~~g~G~~l~~-~p~~i~~iv~~~~~~ 180 (240)
++..+ ++. +|+.+.+|.+.+.+-
T Consensus 316 ~v~~~--------------~~~~gP~~~~~i~~~L~~~ 339 (344)
T PRK05286 316 QIYSG--------------LIYEGPGLVKEIVRGLARL 339 (344)
T ss_pred HHHHH--------------HHHhCchHHHHHHHHHHHH
Confidence 88655 434 599999998877653
|
|
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-07 Score=85.05 Aligned_cols=136 Identities=15% Similarity=0.034 Sum_probs=84.0
Q ss_pred CCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCC-----CceeecccccccCCCccccc-----cCchh
Q psy7344 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKN-----GPLFMGPLFIAEPHCDGIDI-----NIGCP 83 (240)
Q Consensus 14 ~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~-----~p~~vk~~~~lap~~~~~dl-----~~gC~ 83 (240)
++|.|+||++||..+ |...+++++.+.+++.++. +..+ .|+++|...... ..+..++ ..| .
T Consensus 160 ~ad~ielN~scP~~~------g~~~~~~~~~~~~iv~av~-~~~~~~~~~~Pv~vKl~~~~~-~~~~~~ia~~l~~aG-a 230 (327)
T cd04738 160 YADYLVVNVSSPNTP------GLRDLQGKEALRELLTAVK-EERNKLGKKVPLLVKIAPDLS-DEELEDIADVALEHG-V 230 (327)
T ss_pred hCCEEEEECCCCCCC------ccccccCHHHHHHHHHHHH-HHHhhcccCCCeEEEeCCCCC-HHHHHHHHHHHHHcC-C
Confidence 489999999999853 3445899999999999998 3444 899988421110 0011111 223 2
Q ss_pred hhhhhhcccc---------------eee-e----CChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEE
Q psy7344 84 QMVAKRGHYG---------------AYL-Q----DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGI 143 (240)
Q Consensus 84 ~~i~~~g~~g---------------a~l-~----~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~I 143 (240)
+.++.++++. .+. . ..++.+..+...+. .+.|++.. +++.+..++.+++..|+|.|
T Consensus 231 d~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~-~~ipIi~~---GGI~t~~da~e~l~aGAd~V 306 (327)
T cd04738 231 DGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTG-GKIPIIGV---GGISSGEDAYEKIRAGASLV 306 (327)
T ss_pred cEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhC-CCCcEEEE---CCCCCHHHHHHHHHcCCCHH
Confidence 3343333221 111 0 11455555544432 13566654 88888889999998889999
Q ss_pred EecCCCchhhhhcccccccccC-CHHHHHHHHHH
Q psy7344 144 DINIGCPQMVAKRGHYGAYLQD-DWPLLTNLVYS 176 (240)
Q Consensus 144 din~gCP~~~~~~~g~G~~l~~-~p~~i~~iv~~ 176 (240)
++..+ ++. .|+.+.+|.+.
T Consensus 307 ~vg~~--------------~~~~gP~~~~~i~~~ 326 (327)
T cd04738 307 QLYTG--------------LVYEGPGLVKRIKRE 326 (327)
T ss_pred hccHH--------------HHhhCcHHHHHHHhc
Confidence 88665 334 59999888764
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.5e-06 Score=78.94 Aligned_cols=93 Identities=18% Similarity=0.174 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHcc-CCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 126 SKNLTEAAKLAEP-HCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 126 ~~~~~~aa~~le~-~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++.+.++|+.+.+ |+|+|+||.|| |..--....||..+......+.+|++++++.+ +.+ |
T Consensus 151 i~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~v---------g~d-~ 220 (338)
T cd02933 151 VADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAI---------GAD-R 220 (338)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHh---------CCC-c
Confidence 3456677777755 89999999999 64222233456668788889999999999973 123 7
Q ss_pred eEEeeeh-------------hcHHHHHHHHhC-CCCeEEE-ecccccc
Q psy7344 196 IGCPQMV-------------AKRGHYGAYLQD-DWPLLTE-LGKMAML 228 (240)
Q Consensus 196 vsvK~r~-------------~~~~~~~~~l~~-G~~~iti-h~R~~~~ 228 (240)
|++|++. +++.++++.|++ |+|.|.| |+++..+
T Consensus 221 v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~ 268 (338)
T cd02933 221 VGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGN 268 (338)
T ss_pred eEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence 9999972 235689999999 9999999 8887654
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.9e-06 Score=77.82 Aligned_cols=93 Identities=9% Similarity=-0.002 Sum_probs=68.5
Q ss_pred CCceeEEeecC-----CHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCC
Q psy7344 114 MCGHSLMFCGN-----DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPH 188 (240)
Q Consensus 114 ~~pvivqi~g~-----d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~ 188 (240)
+.|++++++.. +++++.++.+++ ++|+++||.+|++......+. .|++.+.+.++.+++.
T Consensus 112 ~~p~~~Nl~~~~~~~~~~~~~~~~i~~~--~adalel~l~~~q~~~~~~~~-----~df~~~~~~i~~l~~~-------- 176 (326)
T cd02811 112 NGPLIANLGAVQLNGYGVEEARRAVEMI--EADALAIHLNPLQEAVQPEGD-----RDFRGWLERIEELVKA-------- 176 (326)
T ss_pred CceEEeecCccccCCCCHHHHHHHHHhc--CCCcEEEeCcchHhhcCCCCC-----cCHHHHHHHHHHHHHh--------
Confidence 47888888653 445455444444 589999999988876555432 4666555666766666
Q ss_pred CCCCCeeeEEeee-hhcHHHHHHHHhC-CCCeEEEecc
Q psy7344 189 CDGNDINIGCPQM-VAKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 189 ~~~~~~pvsvK~r-~~~~~~~~~~l~~-G~~~itih~R 224 (240)
.++||.+|.. ...+.+.++.|++ |+|+|.++|+
T Consensus 177 ---~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~ 211 (326)
T cd02811 177 ---LSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGA 211 (326)
T ss_pred ---cCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCC
Confidence 6889999997 4456789999999 9999999996
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.8e-06 Score=78.73 Aligned_cols=96 Identities=18% Similarity=0.125 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHcc-CCCEEEecCC---------CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 126 SKNLTEAAKLAEP-HCDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 126 ~~~~~~aa~~le~-~~d~Idin~g---------CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++++.++|+.+.+ |+|+|+||++ ||........||.++..+...+.+|++++++++. . + .+.+++
T Consensus 143 i~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg---~-~-~~~~~~ 217 (353)
T cd04735 143 IDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVID---K-H-ADKDFI 217 (353)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhc---c-c-cCCCce
Confidence 3456777777755 8999999986 6865444456777788888999999999999830 0 0 002455
Q ss_pred eEEeeeh----------hcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 196 IGCPQMV----------AKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 196 vsvK~r~----------~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
|.+|+.. +++.++++.|++ |+|+|+||+.+.
T Consensus 218 v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~ 259 (353)
T cd04735 218 LGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDF 259 (353)
T ss_pred EEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCcc
Confidence 6665552 356789999999 999999998654
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1e-06 Score=77.38 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=61.0
Q ss_pred HHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHH
Q psy7344 130 TEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHY 208 (240)
Q Consensus 130 ~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~ 208 (240)
.+.+++.|+ |++.||+|.|||+.....+ |.+++.+|+.+++|.++ +++||++|.|+.. ..-
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd~~~~g--g~~Rm~~p~~I~aIk~~---------------V~iPVigk~Righ-~~E 88 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPADIRAAG--GVARMADPKMIEEIMDA---------------VSIPVMAKARIGH-FVE 88 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCchHhhcC--CeeecCCHHHHHHHHHh---------------CCCCeEEeehhhH-HHH
Confidence 357788877 8999999999999876655 88899999999866654 6889999999654 556
Q ss_pred HHHHhC-CCCeEEE
Q psy7344 209 GAYLQD-DWPLLTE 221 (240)
Q Consensus 209 ~~~l~~-G~~~iti 221 (240)
++.|++ |+|.|--
T Consensus 89 a~~L~~~GvDiID~ 102 (293)
T PRK04180 89 AQILEALGVDYIDE 102 (293)
T ss_pred HHHHHHcCCCEEec
Confidence 788899 9999953
|
|
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.7e-05 Score=72.18 Aligned_cols=153 Identities=12% Similarity=0.088 Sum_probs=95.1
Q ss_pred cccCCCCeecccC--CCc-----hhhh--hccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCccccccC
Q psy7344 10 ETEPHCDGIDINI--GCP-----QMVA--KRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINI 80 (240)
Q Consensus 10 ~~~~~~d~id~N~--gcP-----~~kv--~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~dl~~ 80 (240)
..+.|+|.|+||+ ||. ++++ +...||+.|.+...++.+|+.++. +....+++++.+. +.
T Consensus 150 a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir-~~vg~~~~v~iRl-----------~~ 217 (343)
T cd04734 150 CQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVR-AAVGPDFIVGIRI-----------SG 217 (343)
T ss_pred HHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHH-HHcCCCCeEEEEe-----------eh
Confidence 3457899999999 754 4444 446789999999999999999998 3444444443221 00
Q ss_pred chhhhhhhhcccceeeeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-C-CCEEEecCCCchhhh-hcc
Q psy7344 81 GCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-H-CDGIDINIGCPQMVA-KRG 157 (240)
Q Consensus 81 gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~-~d~Idin~gCP~~~~-~~~ 157 (240)
.+.+ + .|.+.++..++++.+++ + +|.|++..|...... .+.
T Consensus 218 -------------------~~~~------------~-----~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~ 261 (343)
T cd04734 218 -------------------DEDT------------E-----GGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAH 261 (343)
T ss_pred -------------------hhcc------------C-----CCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCccccccc
Confidence 0000 0 12355666788888876 6 799999766321100 000
Q ss_pred cccccc---cCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 158 HYGAYL---QDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 158 g~G~~l---~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
...... ..+++.++.+. +. +++||.+-.++.+..+..+.+++ ++|.|.+ ||.-
T Consensus 262 ~~~~~~~~~~~~~~~~~~ik----~~-----------~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~-gR~~ 318 (343)
T cd04734 262 VVPSMGMPPGPFLPLAARIK----QA-----------VDLPVFHAGRIRDPAEAEQALAAGHADMVGM-TRAH 318 (343)
T ss_pred ccCCCCCCcchhHHHHHHHH----HH-----------cCCCEEeeCCCCCHHHHHHHHHcCCCCeeee-cHHh
Confidence 011100 12345444444 44 56788888888777888888888 8999999 8864
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.6e-05 Score=68.76 Aligned_cols=109 Identities=6% Similarity=-0.067 Sum_probs=74.7
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
+.++|+++...+ ..|+ |++ +.+.+.+++.+.+..|++-+ ..|++++.||+.+.++++...
T Consensus 63 n~~~i~~i~~~~---~~pv--~vg-GGirs~edv~~~l~~Ga~kv--------------viGs~~l~~p~l~~~i~~~~~ 122 (241)
T PRK14024 63 NRELLAEVVGKL---DVKV--ELS-GGIRDDESLEAALATGCARV--------------NIGTAALENPEWCARVIAEHG 122 (241)
T ss_pred cHHHHHHHHHHc---CCCE--EEc-CCCCCHHHHHHHHHCCCCEE--------------EECchHhCCHHHHHHHHHHhh
Confidence 357777776543 2454 443 44555666667776665433 356678999999999998875
Q ss_pred hccccccCCCCCCCCeee---EEeee-h----hcHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 179 MVHFVIAEPHCDGNDINI---GCPQM-V----AKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 179 ~~~~~i~~~~~~~~~~pv---svK~r-~----~~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
+.+ + ..+++ .+|++ + .+..++++.+++ |++.|++|+|++.+.+ +|+ ||+
T Consensus 123 ~~i--~-------vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~--~G~-d~~ 180 (241)
T PRK14024 123 DRV--A-------VGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTL--TGP-NLE 180 (241)
T ss_pred hhE--E-------EEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCc--cCC-CHH
Confidence 541 1 23344 45544 2 246899999999 9999999999999985 676 886
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=98.09 E-value=6e-06 Score=74.58 Aligned_cols=143 Identities=9% Similarity=-0.013 Sum_probs=82.8
Q ss_pred cccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCcccc--ccCchhhhhh
Q psy7344 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGID--INIGCPQMVA 87 (240)
Q Consensus 10 ~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~d--l~~gC~~~i~ 87 (240)
..+.++|.|+||++||... .+..|+.+ ++.+.+++.++. +..+.|+++|-...+....+..+ ...| ...++
T Consensus 121 ~~~~gad~iElN~s~~~~~--~~~~g~~~---~~~~~eiv~~v~-~~~~iPv~vKl~p~~~~~~~~a~~l~~~G-adgi~ 193 (325)
T cd04739 121 IEEAGADALELNIYALPTD--PDISGAEV---EQRYLDILRAVK-SAVTIPVAVKLSPFFSALAHMAKQLDAAG-ADGLV 193 (325)
T ss_pred HHhcCCCEEEEeCCCCCCC--CCcccchH---HHHHHHHHHHHH-hccCCCEEEEcCCCccCHHHHHHHHHHcC-CCeEE
Confidence 3455799999999996422 23344333 467889999998 46689999983211110000100 1233 23344
Q ss_pred hhcccce-ee-------------e------CChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecC
Q psy7344 88 KRGHYGA-YL-------------Q------DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINI 147 (240)
Q Consensus 88 ~~g~~ga-~l-------------~------~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~ 147 (240)
.++++.. .. . ..+++++++...+ +.|++.. +++.+..++.+++..|+++|++..
T Consensus 194 ~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~---~ipIig~---GGI~s~~Da~e~l~aGA~~Vqv~t 267 (325)
T cd04739 194 LFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV---KASLAAS---GGVHDAEDVVKYLLAGADVVMTTS 267 (325)
T ss_pred EEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc---CCCEEEE---CCCCCHHHHHHHHHcCCCeeEEeh
Confidence 4433211 00 0 0022333333222 3676654 888888999999988999999965
Q ss_pred CCchhhhhcccccccccC-CHHHHHHHHHHhhh
Q psy7344 148 GCPQMVAKRGHYGAYLQD-DWPLLTNLVYSPNM 179 (240)
Q Consensus 148 gCP~~~~~~~g~G~~l~~-~p~~i~~iv~~~~~ 179 (240)
+ ++. .|+.+.+|.+.+.+
T Consensus 268 a--------------~~~~gp~~~~~i~~~L~~ 286 (325)
T cd04739 268 A--------------LLRHGPDYIGTLLAGLEA 286 (325)
T ss_pred h--------------hhhcCchHHHHHHHHHHH
Confidence 5 333 57788887777655
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.2e-05 Score=73.42 Aligned_cols=86 Identities=16% Similarity=0.241 Sum_probs=64.5
Q ss_pred HHHHHHHHHHc-cCCCEEEecCC---------CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAE-PHCDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le-~~~d~Idin~g---------CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+.+.++|+.+. .|+|+|+|..+ ||..-.....||.++...+..+.++++++++.+ +.+++|
T Consensus 137 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~v---------G~d~~v 207 (353)
T cd02930 137 EDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAV---------GEDFII 207 (353)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHc---------CCCceE
Confidence 45667777764 48999999543 776433445577778888999999999999982 235666
Q ss_pred EEeeeh----------hcHHHHHHHHhC-CCCeEEE
Q psy7344 197 GCPQMV----------AKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 197 svK~r~----------~~~~~~~~~l~~-G~~~iti 221 (240)
.+|+.. +++.++++.|++ |+|+|++
T Consensus 208 ~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~v 243 (353)
T cd02930 208 IYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNT 243 (353)
T ss_pred EEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 666652 246789999999 9999999
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.6e-06 Score=78.76 Aligned_cols=149 Identities=14% Similarity=0.104 Sum_probs=95.9
Q ss_pred cccCCCCeecccCC---------CchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccc--cccC-C--Ccc
Q psy7344 10 ETEPHCDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLF--IAEP-H--CDG 75 (240)
Q Consensus 10 ~~~~~~d~id~N~g---------cP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~--~lap-~--~~~ 75 (240)
..+.|+|.|+||+| ||...-+...||..|.+...++.+|+.++. +..+.|+.++... ...+ + .+.
T Consensus 151 a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir-~~~~~~v~vRis~~d~~~~G~~~~e~ 229 (337)
T PRK13523 151 AKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVK-EVWDGPLFVRISASDYHPGGLTVQDY 229 (337)
T ss_pred HHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHH-HhcCCCeEEEecccccCCCCCCHHHH
Confidence 44568999999999 897766555677779999999999999999 4556677776321 1111 0 011
Q ss_pred ccc-----cCchhhhhhhhcccce----e-e-eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccC-CCEE
Q psy7344 76 IDI-----NIGCPQMVAKRGHYGA----Y-L-QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGI 143 (240)
Q Consensus 76 ~dl-----~~gC~~~i~~~g~~ga----~-l-~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~-~d~I 143 (240)
.++ ..| ...+.+++++-. . . ..++++.+.++..+ ..||++. ++..+...+.+.++++ +|.|
T Consensus 230 ~~i~~~l~~~g-vD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~---~ipVi~~---G~i~~~~~a~~~l~~g~~D~V 302 (337)
T PRK13523 230 VQYAKWMKEQG-VDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHA---NIATGAV---GLITSGAQAEEILQNNRADLI 302 (337)
T ss_pred HHHHHHHHHcC-CCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhc---CCcEEEe---CCCCCHHHHHHHHHcCCCChH
Confidence 111 223 233444443210 0 1 11356666665443 3677665 6666666777888875 8999
Q ss_pred EecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc
Q psy7344 144 DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 144 din~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
.++++ ++.||+++.++.+.+...
T Consensus 303 ~~gR~--------------~iadP~~~~k~~~~~~~~ 325 (337)
T PRK13523 303 FIGRE--------------LLRNPYFPRIAAKELGFE 325 (337)
T ss_pred HhhHH--------------HHhCccHHHHHHHHcCCC
Confidence 88776 789999999998877665
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=4e-05 Score=67.04 Aligned_cols=106 Identities=11% Similarity=0.012 Sum_probs=77.4
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
+.++++++.... ..|+ + .++++.++.++.+++..|++.|.+|.. ++.+|+.+.++.+...
T Consensus 62 n~~~i~~i~~~~---~~pv--~-~gGGi~s~~d~~~l~~~G~~~vvigs~--------------~~~~~~~~~~~~~~~~ 121 (258)
T PRK01033 62 NYELIENLASEC---FMPL--C-YGGGIKTLEQAKKIFSLGVEKVSINTA--------------ALEDPDLITEAAERFG 121 (258)
T ss_pred cHHHHHHHHHhC---CCCE--E-ECCCCCCHHHHHHHHHCCCCEEEEChH--------------HhcCHHHHHHHHHHhC
Confidence 467777776542 3564 3 346777777888888778999999843 5789999999998764
Q ss_pred hccccccCCCCCCCCeeeEEeeeh------------------hcHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 179 MVHFVIAEPHCDGNDINIGCPQMV------------------AKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 179 ~~~~~i~~~~~~~~~~pvsvK~r~------------------~~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
.. .++++++.|. .+..++++.+++ |++.+.+|+|++.+.+ +|. ||+
T Consensus 122 ~~------------~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~--~G~-d~~ 186 (258)
T PRK01033 122 SQ------------SVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTM--KGY-DLE 186 (258)
T ss_pred CC------------cEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCc--CCC-CHH
Confidence 22 3566666541 136799999999 9999999999999885 564 875
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.3e-05 Score=73.54 Aligned_cols=127 Identities=11% Similarity=0.011 Sum_probs=82.1
Q ss_pred ecccccccCCCccccccCchhhhhhhhcccceee-eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCC
Q psy7344 63 MGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYL-QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCD 141 (240)
Q Consensus 63 vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l-~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d 141 (240)
++...+.+||...++..+. ..++..|+.|..- ..-| +......|+..||.+.++ .++++.+++..
T Consensus 46 i~~Piv~a~M~gVt~~~la--~avs~~GglGvl~~~gl~--------~~~~~~e~l~~qi~~~~~---~~~~~~~~~~~- 111 (368)
T PRK08649 46 FEIPIIASPMDAVVSPETA--IELGKLGGLGVLNLEGLW--------TRYEDPEPILDEIASLGK---DEATRLMQELY- 111 (368)
T ss_pred ccCcEeccCCcccCCHHHH--HHHHhCCCceEEeecccc--------ccCCCHHHHHHHHHhcCc---HHHHHHHHHhh-
Confidence 4456678999999998886 7777776544422 1111 000011234445544444 23444443310
Q ss_pred EEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh--hcHHHHHHHHhC-CCCe
Q psy7344 142 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV--AKRGHYGAYLQD-DWPL 218 (240)
Q Consensus 142 ~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~--~~~~~~~~~l~~-G~~~ 218 (240)
. .+.+|+++.+++++++++ .|++|+|+ .++.++++.+++ |+|.
T Consensus 112 ------~--------------~P~~p~l~~~iv~~~~~~--------------~V~v~vr~~~~~~~e~a~~l~eaGvd~ 157 (368)
T PRK08649 112 ------A--------------EPIKPELITERIAEIRDA--------------GVIVAVSLSPQRAQELAPTVVEAGVDL 157 (368)
T ss_pred ------c--------------CCCCHHHHHHHHHHHHhC--------------eEEEEEecCCcCHHHHHHHHHHCCCCE
Confidence 0 136899999999999886 25667765 468999999999 9999
Q ss_pred EEEecccccccCCCCCCC-CCC
Q psy7344 219 LTELGKMAMLVGILDNTG-SWT 239 (240)
Q Consensus 219 itih~R~~~~~~~~~~~a-dw~ 239 (240)
|++|+||+.|.| .+.+ ||.
T Consensus 158 I~vhgrt~~~~h--~~~~~~~~ 177 (368)
T PRK08649 158 FVIQGTVVSAEH--VSKEGEPL 177 (368)
T ss_pred EEEeccchhhhc--cCCcCCHH
Confidence 999999999986 3444 674
|
|
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.9e-05 Score=68.92 Aligned_cols=153 Identities=15% Similarity=0.132 Sum_probs=95.0
Q ss_pred cccCCCCeecccCCC---------chhhhhccCCCcccCCCchhHHHHHHHhhcccCC--CceeecccccccCCCccccc
Q psy7344 10 ETEPHCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKN--GPLFMGPLFIAEPHCDGIDI 78 (240)
Q Consensus 10 ~~~~~~d~id~N~gc---------P~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~--~p~~vk~~~~lap~~~~~dl 78 (240)
..+.|+|.|+||+|| |.-..+...||..|.+.+.++.+++.++. ++.. .|+.++ +
T Consensus 158 a~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR-~avG~d~~v~vr-------------i 223 (338)
T cd04733 158 AQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIR-AAVGPGFPVGIK-------------L 223 (338)
T ss_pred HHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHH-HHcCCCCeEEEE-------------E
Confidence 455689999999998 66544445678789999999999999998 3432 233332 1
Q ss_pred cCchhhhhhhhcccceeeeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcc
Q psy7344 79 NIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRG 157 (240)
Q Consensus 79 ~~gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~ 157 (240)
+.- +.. + .|.+.++..++++.+++ ++|.|++..|.........
T Consensus 224 s~~-------------------~~~------------~-----~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~ 267 (338)
T cd04733 224 NSA-------------------DFQ------------R-----GGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAG 267 (338)
T ss_pred cHH-------------------HcC------------C-----CCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccc
Confidence 100 000 0 11345566778888876 7899998877432111000
Q ss_pred -cccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 158 -HYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 158 -g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.... ....+-...++.+.+++. +++||.+-.++.+..++.+.+++ ++|.|.+ ||-
T Consensus 268 ~~~~~-~~~~~~~~~~~~~~ik~~-----------v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~l-gR~ 324 (338)
T cd04733 268 AKKES-TIAREAYFLEFAEKIRKV-----------TKTPLMVTGGFRTRAAMEQALASGAVDGIGL-ARP 324 (338)
T ss_pred cccCC-ccccchhhHHHHHHHHHH-----------cCCCEEEeCCCCCHHHHHHHHHcCCCCeeee-ChH
Confidence 0000 000111112344445555 67899998888888889999999 8999998 774
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.5e-05 Score=71.52 Aligned_cols=89 Identities=18% Similarity=0.110 Sum_probs=68.4
Q ss_pred HHHHHHHHHHcc-CCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+++.++|+.+.+ |+|+|+|+.+| |........||..+......+.+|++++++.+ +.++||
T Consensus 144 ~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~v---------G~d~~v 214 (361)
T cd04747 144 AAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAV---------GPDFPI 214 (361)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHc---------CCCCeE
Confidence 456677777755 89999999999 76544556688888888899999999999973 246899
Q ss_pred EEeeeh--------------hcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 197 GCPQMV--------------AKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 197 svK~r~--------------~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
.+|+.. ++..++++.|++ |+|.|. .++.
T Consensus 215 ~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~--vs~g 257 (361)
T cd04747 215 ILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFH--CSTR 257 (361)
T ss_pred EEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEE--ecCC
Confidence 999982 123567788999 999954 4553
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.2e-05 Score=65.97 Aligned_cols=99 Identities=8% Similarity=0.019 Sum_probs=72.2
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
++++++++...+ ..|+++. +.+.+..++.+.++.|+++|.+|.+ ++.+|+.+.++++.+.
T Consensus 59 ~~~~i~~i~~~~---~~pv~~~---GGI~s~~d~~~~l~~G~~~v~ig~~--------------~~~~p~~~~~i~~~~~ 118 (243)
T cd04731 59 MLDVVERVAEEV---FIPLTVG---GGIRSLEDARRLLRAGADKVSINSA--------------AVENPELIREIAKRFG 118 (243)
T ss_pred cHHHHHHHHHhC---CCCEEEe---CCCCCHHHHHHHHHcCCceEEECch--------------hhhChHHHHHHHHHcC
Confidence 577888876554 3676644 6777777777777778999999866 4679999999998764
Q ss_pred h-ccccccCCCCCCCCeeeEEe----------ee------hhcHHHHHHHHhC-CCCeEEEecccccc
Q psy7344 179 M-VHFVIAEPHCDGNDINIGCP----------QM------VAKRGHYGAYLQD-DWPLLTELGKMAML 228 (240)
Q Consensus 179 ~-~~~~i~~~~~~~~~~pvsvK----------~r------~~~~~~~~~~l~~-G~~~itih~R~~~~ 228 (240)
. . .-+++.+| +| ..++.++++.+++ |+++|.+|+|++..
T Consensus 119 ~~~-----------i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g 175 (243)
T cd04731 119 SQC-----------VVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDG 175 (243)
T ss_pred CCC-----------EEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 2 2 22344444 33 1357889999999 99999999999754
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.9e-05 Score=72.80 Aligned_cols=152 Identities=19% Similarity=0.274 Sum_probs=91.2
Q ss_pred cccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccc-----------cccCCCccc
Q psy7344 8 RIETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLF-----------IAEPHCDGI 76 (240)
Q Consensus 8 ~~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~-----------~lap~~~~~ 76 (240)
+.+.+.++|.|.||+.||.....++ .|+.+.++|+.+.+++.++. +..+.|+++|-.- .....++++
T Consensus 134 ~~~e~~GaD~iELNiSCPn~~~~r~-~g~~~gq~~e~~~~i~~~Vk-~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi 211 (385)
T PLN02495 134 ERVEETGVDALEINFSCPHGMPERK-MGAAVGQDCDLLEEVCGWIN-AKATVPVWAKMTPNITDITQPARVALKSGCEGV 211 (385)
T ss_pred HHHHhcCCCEEEEECCCCCCCCcCc-cchhhccCHHHHHHHHHHHH-HhhcCceEEEeCCChhhHHHHHHHHHHhCCCEE
Confidence 3455667999999999999766664 68889999999999999998 4668999988310 011111111
Q ss_pred ------------cccCchhhhhhh--hcccceee-eC-Ch---hhHHHhhhcccC---CCCceeEEeecCCHHHHHHHHH
Q psy7344 77 ------------DINIGCPQMVAK--RGHYGAYL-QD-DW---PLLTELGFKTRS---HMCGHSLMFCGNDSKNLTEAAK 134 (240)
Q Consensus 77 ------------dl~~gC~~~i~~--~g~~ga~l-~~-d~---eli~~i~~~~~~---~~~pvivqi~g~d~~~~~~aa~ 134 (240)
|+..+-|.. .. .+++|.+. .. .| .++.++...+.. ...|++.. +.+.+..++++
T Consensus 212 ~liNT~~~~~~ID~~t~~p~~-~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGv---GGI~s~~Da~e 287 (385)
T PLN02495 212 AAINTIMSVMGINLDTLRPEP-CVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGI---GGVETGGDAAE 287 (385)
T ss_pred EEecccCcccccccccCcccc-ccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEE---CCCCCHHHHHH
Confidence 111110100 00 01122211 00 01 222233333221 12454433 78888999999
Q ss_pred HHccCCCEEEecCCCchhhhhcccccccccCC-HHHHHHHHHHhhh
Q psy7344 135 LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD-WPLLTNLVYSPNM 179 (240)
Q Consensus 135 ~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~-p~~i~~iv~~~~~ 179 (240)
++..|++.|.+.-+ ++.+ |..+.+|.+.+.+
T Consensus 288 ~i~aGAs~VQv~Ta--------------~~~~Gp~vi~~i~~~L~~ 319 (385)
T PLN02495 288 FILLGADTVQVCTG--------------VMMHGYPLVKNLCAELQD 319 (385)
T ss_pred HHHhCCCceeEeee--------------eeecCcHHHHHHHHHHHH
Confidence 99999999988444 5566 8888888877765
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.2e-05 Score=72.85 Aligned_cols=143 Identities=9% Similarity=-0.023 Sum_probs=82.4
Q ss_pred cccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCcccc--ccCchhhhhh
Q psy7344 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGID--INIGCPQMVA 87 (240)
Q Consensus 10 ~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~d--l~~gC~~~i~ 87 (240)
+.+.++|.|+||++||..+.. ..|.. .++.+.+++.++. +..+.|+++|-........+... ...| ...++
T Consensus 123 ~~~agad~ielN~scpp~~~~--~~g~~---~~~~~~eil~~v~-~~~~iPV~vKl~p~~~~~~~~a~~l~~~G-~dgI~ 195 (334)
T PRK07565 123 IEQAGADALELNIYYLPTDPD--ISGAE---VEQRYLDILRAVK-SAVSIPVAVKLSPYFSNLANMAKRLDAAG-ADGLV 195 (334)
T ss_pred HHHcCCCEEEEeCCCCCCCCC--Ccccc---HHHHHHHHHHHHH-hccCCcEEEEeCCCchhHHHHHHHHHHcC-CCeEE
Confidence 345579999999999765432 22322 2456788889998 46689999983211100000000 1233 23333
Q ss_pred hhcccceeeeCC---------------------hhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEec
Q psy7344 88 KRGHYGAYLQDD---------------------WPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDIN 146 (240)
Q Consensus 88 ~~g~~ga~l~~d---------------------~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin 146 (240)
.++++.. ...| ++.+..+...+ ..|++.. +++.+..++.+++..|+++|++.
T Consensus 196 ~~n~~~~-~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~---~ipIig~---GGI~s~~Da~e~l~aGA~~V~v~ 268 (334)
T PRK07565 196 LFNRFYQ-PDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV---GADLAAT---TGVHDAEDVIKMLLAGADVVMIA 268 (334)
T ss_pred EECCcCC-CCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc---CCCEEEE---CCCCCHHHHHHHHHcCCCceeee
Confidence 3333211 0001 22333332222 3676654 88889999999998899999996
Q ss_pred CCCchhhhhcccccccccC-CHHHHHHHHHHhhhc
Q psy7344 147 IGCPQMVAKRGHYGAYLQD-DWPLLTNLVYSPNMV 180 (240)
Q Consensus 147 ~gCP~~~~~~~g~G~~l~~-~p~~i~~iv~~~~~~ 180 (240)
.+ ++. .|+.+.+|.+.+++.
T Consensus 269 t~--------------~~~~g~~~~~~i~~~L~~~ 289 (334)
T PRK07565 269 SA--------------LLRHGPDYIGTILRGLEDW 289 (334)
T ss_pred hH--------------HhhhCcHHHHHHHHHHHHH
Confidence 55 333 477888887777664
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00011 Score=62.79 Aligned_cols=106 Identities=8% Similarity=0.002 Sum_probs=74.7
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
++++++++...+ ..|+.+. +.+.+..++.++++.|+|.|.++.. ++.||+.+.++.+...
T Consensus 61 ~~~~i~~i~~~~---~~pv~~~---GgI~~~e~~~~~~~~Gad~vvigs~--------------~l~dp~~~~~i~~~~g 120 (234)
T cd04732 61 NLELIEEIVKAV---GIPVQVG---GGIRSLEDIERLLDLGVSRVIIGTA--------------AVKNPELVKELLKEYG 120 (234)
T ss_pred CHHHHHHHHHhc---CCCEEEe---CCcCCHHHHHHHHHcCCCEEEECch--------------HHhChHHHHHHHHHcC
Confidence 577888876543 3565443 5566777777778789999977665 4679999999998754
Q ss_pred hccccccCCCCCCCCeeeEEeee-------------hhcHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 179 MVHFVIAEPHCDGNDINIGCPQM-------------VAKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 179 ~~~~~i~~~~~~~~~~pvsvK~r-------------~~~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
.. .+.++++.+ ..+..++++.+++ |++.+++|.+++.+.+ .+ .||+
T Consensus 121 ~~------------~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~--~g-~~~~ 180 (234)
T cd04732 121 GE------------RIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTL--SG-PNFE 180 (234)
T ss_pred Cc------------eEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCcc--CC-CCHH
Confidence 31 223333322 1256889999999 9999999999988764 45 7774
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.7e-05 Score=71.52 Aligned_cols=142 Identities=13% Similarity=0.061 Sum_probs=86.4
Q ss_pred cccCCCCeecccCCC---------ch-hhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCC-------
Q psy7344 10 ETEPHCDGIDINIGC---------PQ-MVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPH------- 72 (240)
Q Consensus 10 ~~~~~~d~id~N~gc---------P~-~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~------- 72 (240)
..+.|+|.|+||+|| |. ++.+. .||+.|.+...++.+|+.++. +....++.|..+.-....
T Consensus 159 a~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD-~yGGslenR~Rf~~eii~aIr-~~vg~~~~v~vRls~~~~~~~~g~~ 236 (370)
T cd02929 159 ARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTD-EYGGSLENRARFWRETLEDTK-DAVGDDCAVATRFSVDELIGPGGIE 236 (370)
T ss_pred HHHcCCCEEEEcccccchHHHhhCccccCCcc-ccCCChHhhhHHHHHHHHHHH-HHcCCCceEEEEecHHHhcCCCCCC
Confidence 445689999999999 77 55555 699999999999999999999 455444444322111110
Q ss_pred ---------------CccccccCchhhhhhhhcccceee--eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHH
Q psy7344 73 ---------------CDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKL 135 (240)
Q Consensus 73 ---------------~~~~dl~~gC~~~i~~~g~~ga~l--~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~ 135 (240)
.|++++..|- ...++....+. ...+++...++..+ +.|++.. ++..+...+.++
T Consensus 237 ~~~e~~~~~~~l~~~~D~i~vs~g~---~~~~~~~~~~~~~~~~~~~~~~ik~~~---~~pvi~~---G~i~~~~~~~~~ 307 (370)
T cd02929 237 SEGEGVEFVEMLDELPDLWDVNVGD---WANDGEDSRFYPEGHQEPYIKFVKQVT---SKPVVGV---GRFTSPDKMVEV 307 (370)
T ss_pred CHHHHHHHHHHHHhhCCEEEecCCC---ccccccccccCCccccHHHHHHHHHHC---CCCEEEe---CCCCCHHHHHHH
Confidence 1111111110 00000000011 11244545554433 4687665 666666778888
Q ss_pred HccC-CCEEEecCCCchhhhhcccccccccCCHHHHHHHHHH
Q psy7344 136 AEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176 (240)
Q Consensus 136 le~~-~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~ 176 (240)
++++ +|.|.++++ ++.||+++.++.+-
T Consensus 308 l~~g~~D~V~~gR~--------------~ladP~l~~k~~~g 335 (370)
T cd02929 308 VKSGILDLIGAARP--------------SIADPFLPKKIREG 335 (370)
T ss_pred HHcCCCCeeeechH--------------hhhCchHHHHHHcC
Confidence 8875 899999877 78999998888764
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0002 Score=61.36 Aligned_cols=99 Identities=11% Similarity=0.039 Sum_probs=72.1
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
+.++++++...+ ..|+.+ ++++.++.++.+.++.|++.|.+|.. ++.+|+.++++++...
T Consensus 62 n~~~~~~i~~~~---~~pv~~---~ggi~~~~d~~~~~~~G~~~vilg~~--------------~l~~~~~~~~~~~~~~ 121 (232)
T TIGR03572 62 LFELISNLAEEC---FMPLTV---GGGIRSLEDAKKLLSLGADKVSINTA--------------ALENPDLIEEAARRFG 121 (232)
T ss_pred CHHHHHHHHHhC---CCCEEE---ECCCCCHHHHHHHHHcCCCEEEEChh--------------HhcCHHHHHHHHHHcC
Confidence 466777776543 356543 47777777887877778999998744 6789999999997653
Q ss_pred hccccccCCCCCCCCeeeEEeeeh-------------------hcHHHHHHHHhC-CCCeEEEeccccccc
Q psy7344 179 MVHFVIAEPHCDGNDINIGCPQMV-------------------AKRGHYGAYLQD-DWPLLTELGKMAMLV 229 (240)
Q Consensus 179 ~~~~~i~~~~~~~~~~pvsvK~r~-------------------~~~~~~~~~l~~-G~~~itih~R~~~~~ 229 (240)
. ..++++++.+. .+..++++.+++ |++.|++|++++.+.
T Consensus 122 ~------------~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~ 180 (232)
T TIGR03572 122 S------------QCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGT 180 (232)
T ss_pred C------------ceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence 2 22556655432 236899999999 999999999988765
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.71 E-value=9.8e-05 Score=66.09 Aligned_cols=147 Identities=18% Similarity=0.181 Sum_probs=90.2
Q ss_pred cccCC-CCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeeccc----------c-c-ccCCCccc
Q psy7344 10 ETEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPL----------F-I-AEPHCDGI 76 (240)
Q Consensus 10 ~~~~~-~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~----------~-~-lap~~~~~ 76 (240)
+.+.+ +|.|-+|..||. +++ |..|.++|+.+..++.+++ +..+.|+++|-. . . .++..+.+
T Consensus 118 ~~~~~~ad~ielNiScPn---t~g--~~~l~~~~e~l~~l~~~vk-~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~ 191 (310)
T COG0167 118 LEEAGDADAIELNISCPN---TPG--GRALGQDPELLEKLLEAVK-AATKVPVFVKLAPNITDIDEIAKAAEEAGADGLI 191 (310)
T ss_pred HHhcCCCCEEEEEccCCC---CCC--hhhhccCHHHHHHHHHHHH-hcccCceEEEeCCCHHHHHHHHHHHHHcCCcEEE
Confidence 33445 799999999999 343 7778889999999999999 477899999721 0 0 01222222
Q ss_pred cccCchhhh-h----------hhhccc-ceee-eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEE
Q psy7344 77 DINIGCPQM-V----------AKRGHY-GAYL-QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGI 143 (240)
Q Consensus 77 dl~~gC~~~-i----------~~~g~~-ga~l-~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~I 143 (240)
-+|.--... + ..+|++ |..+ .....+++++...+.. +.|+|- .+.+.++.++.+.+..|++.|
T Consensus 192 ~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~-~ipIIG---vGGI~s~~DA~E~i~aGA~~v 267 (310)
T COG0167 192 AINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGG-DIPIIG---VGGIETGEDALEFILAGASAV 267 (310)
T ss_pred EEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCC-CCcEEE---ecCcCcHHHHHHHHHcCCchh
Confidence 112100001 1 112221 1122 1113455555444332 466554 388999999999999988888
Q ss_pred EecCCCchhhhhcccccccccCC-HHHHHHHHHHhhhc
Q psy7344 144 DINIGCPQMVAKRGHYGAYLQDD-WPLLTNLVYSPNMV 180 (240)
Q Consensus 144 din~gCP~~~~~~~g~G~~l~~~-p~~i~~iv~~~~~~ 180 (240)
.+.-+ ++.+ |..+++|.+.+.+-
T Consensus 268 Qv~Ta--------------l~~~Gp~i~~~I~~~l~~~ 291 (310)
T COG0167 268 QVGTA--------------LIYKGPGIVKEIIKGLARW 291 (310)
T ss_pred eeeee--------------eeeeCchHHHHHHHHHHHH
Confidence 77444 6667 88888888876653
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00019 Score=61.29 Aligned_cols=107 Identities=7% Similarity=-0.056 Sum_probs=73.5
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
+.++++++...+ ..|+.+ ++.+.+..++.+.++.|++.|-++ ++++.+|+.+.++.+...
T Consensus 62 ~~~~i~~i~~~~---~~pv~~---~GGI~~~ed~~~~~~~Ga~~vilg--------------~~~l~~~~~l~ei~~~~~ 121 (233)
T PRK00748 62 NLELIEAIVKAV---DIPVQV---GGGIRSLETVEALLDAGVSRVIIG--------------TAAVKNPELVKEACKKFP 121 (233)
T ss_pred cHHHHHHHHHHC---CCCEEE---cCCcCCHHHHHHHHHcCCCEEEEC--------------chHHhCHHHHHHHHHHhC
Confidence 466777765543 356554 356666667777777788877553 346789999999988764
Q ss_pred hccccccCCCCCCCCeeeEEeee------h-----hcHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 179 MVHFVIAEPHCDGNDINIGCPQM------V-----AKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 179 ~~~~~i~~~~~~~~~~pvsvK~r------~-----~~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
+. ..+++.+|.+ + .+..++++.+++ |++.|.+|.+++.+.+ +| .||+
T Consensus 122 ~~-----------i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~--~G-~d~~ 180 (233)
T PRK00748 122 GK-----------IVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTL--SG-PNVE 180 (233)
T ss_pred CC-----------ceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCc--CC-CCHH
Confidence 43 2234444321 1 246899999999 9999999999999885 56 7885
|
|
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=97.65 E-value=1.4e-05 Score=72.88 Aligned_cols=147 Identities=15% Similarity=0.137 Sum_probs=85.5
Q ss_pred cccCCCCeecccCC---------CchhhhhccCCCcccCCCchhHHHHHHHhhcccCC----CceeecccccccCC-Ccc
Q psy7344 10 ETEPHCDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKN----GPLFMGPLFIAEPH-CDG 75 (240)
Q Consensus 10 ~~~~~~d~id~N~g---------cP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~----~p~~vk~~~~lap~-~~~ 75 (240)
..+-|+|.|+||+| ||..+.+...||..|.+...++.+|+.++. ++.. .+..|..+.-...+ .+.
T Consensus 153 a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr-~~vg~~~~~~~~v~~R~s~~~~~~~g 231 (353)
T cd04735 153 AIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQ-EVIDKHADKDFILGYRFSPEEPEEPG 231 (353)
T ss_pred HHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHH-HHhccccCCCceEEEEECcccccCCC
Confidence 44568999999986 898888766788779999999999999998 4543 33334322111111 111
Q ss_pred ccc-----------cCchhhhhhhhcccc-ee--e--eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccC
Q psy7344 76 IDI-----------NIGCPQMVAKRGHYG-AY--L--QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH 139 (240)
Q Consensus 76 ~dl-----------~~gC~~~i~~~g~~g-a~--l--~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~ 139 (240)
.+. ..| ...+.++++.. .. . ...++.+..+...+. ...||++. ++..+..++.++++.+
T Consensus 232 ~~~ee~~~i~~~L~~~G-vD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~-~~iPVi~~---Ggi~t~e~ae~~l~~g 306 (353)
T cd04735 232 IRMEDTLALVDKLADKG-LDYLHISLWDFDRKSRRGRDDNQTIMELVKERIA-GRLPLIAV---GSINTPDDALEALETG 306 (353)
T ss_pred CCHHHHHHHHHHHHHcC-CCEEEeccCccccccccCCcchHHHHHHHHHHhC-CCCCEEEE---CCCCCHHHHHHHHHcC
Confidence 111 222 12333332111 00 0 012344444433332 24677765 5555555666677667
Q ss_pred CCEEEecCCCchhhhhcccccccccCCHHHHHHHHHH
Q psy7344 140 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176 (240)
Q Consensus 140 ~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~ 176 (240)
+|.|.++++ ++.||+++.++.+.
T Consensus 307 aD~V~~gR~--------------liadPdl~~k~~~G 329 (353)
T cd04735 307 ADLVAIGRG--------------LLVDPDWVEKIKEG 329 (353)
T ss_pred CChHHHhHH--------------HHhCccHHHHHHcC
Confidence 888877655 77899988888654
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00016 Score=62.64 Aligned_cols=85 Identities=9% Similarity=-0.069 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHH-----HHHHHhhhccccccCCCCCCCCeeeE-
Q psy7344 124 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT-----NLVYSPNMVHFVIAEPHCDGNDINIG- 197 (240)
Q Consensus 124 ~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~-----~iv~~~~~~~~~i~~~~~~~~~~pvs- 197 (240)
++.+++.++++.+++++|.||||.-||.+.+ .|..+....+.+. ++++.+++. +++|+.
T Consensus 15 p~~~~~~~~~~~l~~~ad~iElgip~sdp~a----dG~~i~~~~~~a~~~g~~~~v~~vr~~-----------~~~Pl~l 79 (244)
T PRK13125 15 PNVESFKEFIIGLVELVDILELGIPPKYPKY----DGPVIRKSHRKVKGLDIWPLLEEVRKD-----------VSVPIIL 79 (244)
T ss_pred CCHHHHHHHHHHHHhhCCEEEECCCCCCCCC----CCHHHHHHHHHHHHcCcHHHHHHHhcc-----------CCCCEEE
Confidence 4788999999999767999999999999853 2444555566655 688888765 677863
Q ss_pred -Eeee--hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 198 -CPQM--VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 198 -vK~r--~~~~~~~~~~l~~-G~~~itih~ 223 (240)
+|.. ..+..++++.+.+ |++++++|.
T Consensus 80 M~y~n~~~~~~~~~i~~~~~~Gadgvii~d 109 (244)
T PRK13125 80 MTYLEDYVDSLDNFLNMARDVGADGVLFPD 109 (244)
T ss_pred EEecchhhhCHHHHHHHHHHcCCCEEEECC
Confidence 4444 4567889999999 999999995
|
|
| >KOG1799|consensus | Back alignment and domain information |
|---|
Probab=97.62 E-value=3.6e-05 Score=69.05 Aligned_cols=98 Identities=12% Similarity=0.095 Sum_probs=79.3
Q ss_pred CCceeEEee----cCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCC
Q psy7344 114 MCGHSLMFC----GNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPH 188 (240)
Q Consensus 114 ~~pvivqi~----g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~ 188 (240)
+.|+.+-|. -.+...+.+++..-++ +.|..++|+.||+..-. .|+|.++.++|....++..++++.
T Consensus 201 ~~p~~imIas~Mciynk~~w~el~d~~eqag~d~lE~nlscphgm~e-rgmgla~gq~p~v~~EvC~Wi~A~-------- 271 (471)
T KOG1799|consen 201 VEPVVIMIASEMCIYNKKCWMELNDSGEQAGQDDLETNLSCPHGMCE-RGMGLALGQCPIVDCEVCGWINAK-------- 271 (471)
T ss_pred cCCceeeehHHHHHhhhhhHHHHhhhHHhhcccchhccCCCCCCCcc-ccccceeccChhhhHHHhhhhhhc--------
Confidence 346555443 2566777788877776 79999999999998544 468999999999999999999998
Q ss_pred CCCCCeeeEEeee--hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 189 CDGNDINIGCPQM--VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 189 ~~~~~~pvsvK~r--~~~~~~~~~~l~~-G~~~itih~ 223 (240)
..+|+..|+. +.+..+.++.... |+.+|+-..
T Consensus 272 ---~~Ip~~~kmTPNitd~revar~~~~~g~~GiaA~N 306 (471)
T KOG1799|consen 272 ---ATIPMVSKMTPNITDKREVARSVNPVGCEGIAAIN 306 (471)
T ss_pred ---cccccccccCCCcccccccchhcCcccccchhhHh
Confidence 7899999999 7788889999888 888876533
|
|
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=97.62 E-value=6e-05 Score=68.49 Aligned_cols=142 Identities=11% Similarity=-0.022 Sum_probs=87.4
Q ss_pred cccCCCCeecccCCC---------c-hhhhhccCCCcccCCCchhHHHHHHHhhcccC-CCceeeccc--ccccCCC---
Q psy7344 10 ETEPHCDGIDINIGC---------P-QMVAKRGHYGAYLQDDWPLLTELVVHFSWVSK-NGPLFMGPL--FIAEPHC--- 73 (240)
Q Consensus 10 ~~~~~~d~id~N~gc---------P-~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~-~~p~~vk~~--~~lap~~--- 73 (240)
..+-|+|.|+||+|| | +++.+.. ||..|.+...++.+++.++. +.. ..|+.++.. .......
T Consensus 161 a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~-yGGslenR~rf~~eii~air-~~vg~d~v~vRis~~~~~~~~~~~~ 238 (338)
T cd02933 161 AIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDE-YGGSIENRARFLLEVVDAVA-EAIGADRVGIRLSPFGTFNDMGDSD 238 (338)
T ss_pred HHHcCCCEEEEccccchhHHHhcCCccCCCCCc-CCCcHHHhhhHHHHHHHHHH-HHhCCCceEEEECccccCCCCCCCC
Confidence 445689999999999 7 6677766 55559999999999999998 344 236666531 1111000
Q ss_pred ---ccccc-----cCchhhhhhh-hcccceee-eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccC-CCE
Q psy7344 74 ---DGIDI-----NIGCPQMVAK-RGHYGAYL-QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDG 142 (240)
Q Consensus 74 ---~~~dl-----~~gC~~~i~~-~g~~ga~l-~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~-~d~ 142 (240)
+.+++ ..| ...+.+ +|++.... ..++++...++..+ ..||++. ++.. ...+.+.++++ +|.
T Consensus 239 ~~ee~~~~~~~l~~~g-~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~---~ipvi~~---G~i~-~~~a~~~l~~g~~D~ 310 (338)
T cd02933 239 PEATFSYLAKELNKRG-LAYLHLVEPRVAGNPEDQPPDFLDFLRKAF---KGPLIAA---GGYD-AESAEAALADGKADL 310 (338)
T ss_pred CHHHHHHHHHHHHHcC-CcEEEEecCCCCCcccccchHHHHHHHHHc---CCCEEEE---CCCC-HHHHHHHHHcCCCCE
Confidence 00111 122 122332 33222211 12456666665544 4787765 5554 56677788774 999
Q ss_pred EEecCCCchhhhhcccccccccCCHHHHHHHHH
Q psy7344 143 IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175 (240)
Q Consensus 143 Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~ 175 (240)
|.++++ ++.||+++.++.+
T Consensus 311 V~~gR~--------------~ladP~~~~k~~~ 329 (338)
T cd02933 311 VAFGRP--------------FIANPDLVERLKN 329 (338)
T ss_pred EEeCHh--------------hhhCcCHHHHHhc
Confidence 999777 6899999888764
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=97.62 E-value=7.8e-05 Score=66.99 Aligned_cols=144 Identities=15% Similarity=0.119 Sum_probs=86.5
Q ss_pred ccccCCCCeecccCC---------CchhhhhccCCCcccCCCchhHHHHHHHhhcccC--CCceeecccc--cccCCC--
Q psy7344 9 IETEPHCDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSK--NGPLFMGPLF--IAEPHC-- 73 (240)
Q Consensus 9 ~~~~~~~d~id~N~g---------cP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~--~~p~~vk~~~--~lap~~-- 73 (240)
...+.|+|.|+||+| ||.-..+...||+.|.+...++.+++.++. +.. +.|+.++... ......
T Consensus 149 ~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr-~~~g~d~~i~vris~~~~~~~g~~~ 227 (327)
T cd02803 149 RAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVR-EAVGPDFPVGVRLSADDFVPGGLTL 227 (327)
T ss_pred HHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHH-HHcCCCceEEEEechhccCCCCCCH
Confidence 345678999999999 676555555688889999999999999998 344 4577665321 000000
Q ss_pred -ccccc-----cCchhhhhhhhccccee--e---------eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHH
Q psy7344 74 -DGIDI-----NIGCPQMVAKRGHYGAY--L---------QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLA 136 (240)
Q Consensus 74 -~~~dl-----~~gC~~~i~~~g~~ga~--l---------~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~l 136 (240)
+..++ ..| ...+.+++++... . ..+++.++.+...+ ..|+++. ++..+..++.+++
T Consensus 228 ~e~~~la~~l~~~G-~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~---~iPVi~~---Ggi~t~~~a~~~l 300 (327)
T cd02803 228 EEAIEIAKALEEAG-VDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV---KIPVIAV---GGIRDPEVAEEIL 300 (327)
T ss_pred HHHHHHHHHHHHcC-CCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC---CCCEEEe---CCCCCHHHHHHHH
Confidence 00000 122 2223222221110 0 11234455554433 3676654 6666677788888
Q ss_pred cc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHH
Q psy7344 137 EP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174 (240)
Q Consensus 137 e~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv 174 (240)
+. ++|.|.++++ ++.||+++.++.
T Consensus 301 ~~g~aD~V~igR~--------------~ladP~l~~k~~ 325 (327)
T cd02803 301 AEGKADLVALGRA--------------LLADPDLPNKAR 325 (327)
T ss_pred HCCCCCeeeecHH--------------HHhCccHHHHHh
Confidence 87 6899988666 678999887765
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00029 Score=70.52 Aligned_cols=147 Identities=16% Similarity=0.206 Sum_probs=97.8
Q ss_pred cccCCCCeecccCC---------CchhhhhccCCCcccCCCchhHHHHHHHhhcccC--CCceeecccccccCCCccccc
Q psy7344 10 ETEPHCDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSK--NGPLFMGPLFIAEPHCDGIDI 78 (240)
Q Consensus 10 ~~~~~~d~id~N~g---------cP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~--~~p~~vk~~~~lap~~~~~dl 78 (240)
..+.|+|.|+||+| ||..+.....||+.|.+...++.+|+.++. +.. +.|++++.
T Consensus 560 a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir-~~~~~~~~v~~ri------------- 625 (765)
T PRK08255 560 AAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVR-AVWPAEKPMSVRI------------- 625 (765)
T ss_pred HHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHH-HhcCCCCeeEEEE-------------
Confidence 34568999999999 999888777899999999999999999888 343 23444431
Q ss_pred cCchhhhhhhhcccceeeeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcc
Q psy7344 79 NIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRG 157 (240)
Q Consensus 79 ~~gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~ 157 (240)
+. .+|. + .|.+.++..++++.+++ |+|.|++..|...... +.
T Consensus 626 ~~-----------------~~~~--------------~-----~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~-~~ 668 (765)
T PRK08255 626 SA-----------------HDWV--------------E-----GGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDE-KP 668 (765)
T ss_pred cc-----------------cccc--------------C-----CCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCC-CC
Confidence 00 0000 0 12355667788888876 7999999877422110 11
Q ss_pred cccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 158 HYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 158 g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.++. ...-+ ..+.+++. +++||.+-.++.+..+..+.+++ ++|.|.+ ||-
T Consensus 669 ~~~~--~~~~~----~~~~ik~~-----------~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~-gR~ 719 (765)
T PRK08255 669 VYGR--MYQTP----FADRIRNE-----------AGIATIAVGAISEADHVNSIIAAGRADLCAL-ARP 719 (765)
T ss_pred CcCc--cccHH----HHHHHHHH-----------cCCEEEEeCCCCCHHHHHHHHHcCCcceeeE-cHH
Confidence 0111 11122 33444555 57799998888888888888888 8999998 775
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00029 Score=64.72 Aligned_cols=164 Identities=11% Similarity=0.018 Sum_probs=99.8
Q ss_pred CCchhHHHHHHHhhcccCCCceeecccccccCC--Ccccc--ccCchhhhhhhhcccce--ee--eCChhhHHHhhhccc
Q psy7344 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPH--CDGID--INIGCPQMVAKRGHYGA--YL--QDDWPLLTELGFKTR 111 (240)
Q Consensus 40 ~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~--~~~~d--l~~gC~~~i~~~g~~ga--~l--~~d~eli~~i~~~~~ 111 (240)
.+|+|+.+++.++. ++ .+++|.+. .|. .+..+ ++.| +..+++||++.+ |. ..+|..+.+++...
T Consensus 116 ~~p~l~~~ii~~vr-~a---~VtvkiRl--~~~~~~e~a~~l~eAG-ad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~- 187 (369)
T TIGR01304 116 LKPELLGERIAEVR-DS---GVITAVRV--SPQNAREIAPIVVKAG-ADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL- 187 (369)
T ss_pred cChHHHHHHHHHHH-hc---ceEEEEec--CCcCHHHHHHHHHHCC-CCEEEEeccchhhhccCCCCCHHHHHHHHHHC-
Confidence 57999999999998 23 26666543 221 11111 2667 577888988765 21 34677777766543
Q ss_pred CCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 112 SHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 112 ~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
+.|+++ ++..+..++.++++.|+|+|+++.|.-.. ...-.|. -......+.++..+.++.... ..+
T Consensus 188 --~IPVI~----G~V~t~e~A~~~~~aGaDgV~~G~gg~~~--~~~~lg~-~~p~~~ai~d~~~a~~~~~~e-----~g~ 253 (369)
T TIGR01304 188 --DVPVIA----GGVNDYTTALHLMRTGAAGVIVGPGGANT--TRLVLGI-EVPMATAIADVAAARRDYLDE-----TGG 253 (369)
T ss_pred --CCCEEE----eCCCCHHHHHHHHHcCCCEEEECCCCCcc--cccccCC-CCCHHHHHHHHHHHHHHHHHh-----cCC
Confidence 468764 44666667777777899999977653221 1111111 123445566665443321000 000
Q ss_pred CCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 192 NDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 192 ~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
..+||.+-..+.+-.++++++..|||++.+-.+.
T Consensus 254 r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~ 287 (369)
T TIGR01304 254 RYVHVIADGGIETSGDLVKAIACGADAVVLGSPL 287 (369)
T ss_pred CCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHH
Confidence 2478888888888899999998899999995444
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00023 Score=65.40 Aligned_cols=88 Identities=15% Similarity=0.118 Sum_probs=61.9
Q ss_pred HHHHHHHHHHcc-CCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+++.++|+.+.+ |+|+||||.|| |..-.....||..+......+.+|++++++.+ +.++||
T Consensus 150 ~~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~v---------g~~~~v 220 (370)
T cd02929 150 RWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAV---------GDDCAV 220 (370)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHc---------CCCceE
Confidence 456677777755 89999999999 55222234688889899999999999999982 134566
Q ss_pred EEeeeh------------hcHHHHHHHHhCCCCeEEEec
Q psy7344 197 GCPQMV------------AKRGHYGAYLQDDWPLLTELG 223 (240)
Q Consensus 197 svK~r~------------~~~~~~~~~l~~G~~~itih~ 223 (240)
.+|+.. +++.++++.|++.+|.+.+..
T Consensus 221 ~vRls~~~~~~~~g~~~~~e~~~~~~~l~~~~D~i~vs~ 259 (370)
T cd02929 221 ATRFSVDELIGPGGIESEGEGVEFVEMLDELPDLWDVNV 259 (370)
T ss_pred EEEecHHHhcCCCCCCCHHHHHHHHHHHHhhCCEEEecC
Confidence 666552 123467777766668887744
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=97.54 E-value=4.9e-05 Score=67.79 Aligned_cols=116 Identities=15% Similarity=0.170 Sum_probs=70.7
Q ss_pred ccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCccccccCchhhhhhhhc
Q psy7344 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRG 90 (240)
Q Consensus 11 ~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~dl~~gC~~~i~~~g 90 (240)
.+.++|.|++|++||+.+.. ..+ +++.++. +..+.|+.+|.. ..+.....-...| ...+.+++
T Consensus 139 ~~~g~~~i~l~~~~p~~~~~---------~~~----~~i~~l~-~~~~~pvivK~v--~s~~~a~~a~~~G-~d~I~v~~ 201 (299)
T cd02809 139 EAAGYKALVLTVDTPVLGRR---------LTW----DDLAWLR-SQWKGPLILKGI--LTPEDALRAVDAG-ADGIVVSN 201 (299)
T ss_pred HHcCCCEEEEecCCCCCCCC---------CCH----HHHHHHH-HhcCCCEEEeec--CCHHHHHHHHHCC-CCEEEEcC
Confidence 45679999999999985433 233 4466666 344689888721 1110000012445 34555543
Q ss_pred ccceee---eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecC
Q psy7344 91 HYGAYL---QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINI 147 (240)
Q Consensus 91 ~~ga~l---~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~ 147 (240)
+.|..+ ...++.+.++...+.+ +.|++.. +++.+..++++.+..|+|+|++++
T Consensus 202 ~gG~~~~~g~~~~~~l~~i~~~~~~-~ipvia~---GGI~~~~d~~kal~lGAd~V~ig~ 257 (299)
T cd02809 202 HGGRQLDGAPATIDALPEIVAAVGG-RIEVLLD---GGIRRGTDVLKALALGADAVLIGR 257 (299)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhcC-CCeEEEe---CCCCCHHHHHHHHHcCCCEEEEcH
Confidence 333321 3346777777655432 3676655 888888899999988999999977
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00037 Score=63.17 Aligned_cols=136 Identities=20% Similarity=0.187 Sum_probs=86.8
Q ss_pred CCCccccccCchh----hhh-----hhhcccceeeeCChhhHHHhhhcccC---CCCceeEEee-------cCCHHHHHH
Q psy7344 71 PHCDGIDINIGCP----QMV-----AKRGHYGAYLQDDWPLLTELGFKTRS---HMCGHSLMFC-------GNDSKNLTE 131 (240)
Q Consensus 71 p~~~~~dl~~gC~----~~i-----~~~g~~ga~l~~d~eli~~i~~~~~~---~~~pvivqi~-------g~d~~~~~~ 131 (240)
-.+|+++++++|- +++ .+.-.||..+..++.++.+++.+++. .+.|+.+.|. +.+.+++.+
T Consensus 166 aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ 245 (336)
T cd02932 166 AGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVE 245 (336)
T ss_pred cCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHH
Confidence 4578889998872 222 22234676666566666666655543 2467888775 236788888
Q ss_pred HHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHH
Q psy7344 132 AAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGA 210 (240)
Q Consensus 132 aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~ 210 (240)
+++.+++ +.|.|++..|....... .-.+. ..+.+.+++ +++. +++||.+-.++.+..++.+
T Consensus 246 ia~~Le~~gvd~iev~~g~~~~~~~-~~~~~--~~~~~~~~~----ir~~-----------~~iPVi~~G~i~t~~~a~~ 307 (336)
T cd02932 246 LAKALKELGVDLIDVSSGGNSPAQK-IPVGP--GYQVPFAER----IRQE-----------AGIPVIAVGLITDPEQAEA 307 (336)
T ss_pred HHHHHHHcCCCEEEECCCCCCcccc-cCCCc--cccHHHHHH----HHhh-----------CCCCEEEeCCCCCHHHHHH
Confidence 9999876 78999997764221100 00000 123344444 4444 5779998888888888888
Q ss_pred HHhC-CCCeEEEeccc
Q psy7344 211 YLQD-DWPLLTELGKM 225 (240)
Q Consensus 211 ~l~~-G~~~itih~R~ 225 (240)
.+++ .+|.|.+ ||-
T Consensus 308 ~l~~g~aD~V~~-gR~ 322 (336)
T cd02932 308 ILESGRADLVAL-GRE 322 (336)
T ss_pred HHHcCCCCeehh-hHH
Confidence 8888 7999988 774
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00031 Score=63.05 Aligned_cols=144 Identities=11% Similarity=0.074 Sum_probs=81.9
Q ss_pred ccCC-CCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeeccccccc--CC-----------Ccc-
Q psy7344 11 TEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAE--PH-----------CDG- 75 (240)
Q Consensus 11 ~~~~-~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~la--p~-----------~~~- 75 (240)
.+.+ +|.|.||+.||.-. + +..+-.|++.+.+++.++. +..+.|+++|-.-... .+ ++.
T Consensus 115 ~~~g~ad~iElN~ScPn~~---~--~~~~g~d~~~~~~i~~~v~-~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i 188 (310)
T PRK02506 115 QASDFNGLVELNLSCPNVP---G--KPQIAYDFETTEQILEEVF-TYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFV 188 (310)
T ss_pred hhcCCCCEEEEECCCCCCC---C--ccccccCHHHHHHHHHHHH-HhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEE
Confidence 3445 89999999999732 1 3445668999999999998 4668899987321100 00 000
Q ss_pred -----------ccccCchhhhhhh-hcccceee-eC----ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc
Q psy7344 76 -----------IDINIGCPQMVAK-RGHYGAYL-QD----DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP 138 (240)
Q Consensus 76 -----------~dl~~gC~~~i~~-~g~~ga~l-~~----d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~ 138 (240)
+|..-+ ..... ...+|-.. .. ...+++++...+. .+.|++.. +.+.+..++++++..
T Consensus 189 ~~~nt~~~~~~iD~~~~--~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~-~~ipIig~---GGI~s~~da~e~i~a 262 (310)
T PRK02506 189 NCINSIGNGLVIDPEDE--TVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLN-PSIQIIGT---GGVKTGRDAFEHILC 262 (310)
T ss_pred EEeccCCCceEEecCCC--CccccCCCCCCcCCchhccHHHHHHHHHHHHhcC-CCCCEEEE---CCCCCHHHHHHHHHc
Confidence 111111 01100 00111111 00 0123333322221 13565544 778888999999999
Q ss_pred CCCEEEecCCCchhhhhccccccccc-CCHHHHHHHHHHhhhc
Q psy7344 139 HCDGIDINIGCPQMVAKRGHYGAYLQ-DDWPLLTNLVYSPNMV 180 (240)
Q Consensus 139 ~~d~Idin~gCP~~~~~~~g~G~~l~-~~p~~i~~iv~~~~~~ 180 (240)
|++.|++.-+ ++ ..|+.+.+|.+.+.+-
T Consensus 263 GA~~Vqv~ta--------------~~~~gp~~~~~i~~~L~~~ 291 (310)
T PRK02506 263 GASMVQVGTA--------------LHKEGPAVFERLTKELKAI 291 (310)
T ss_pred CCCHHhhhHH--------------HHHhChHHHHHHHHHHHHH
Confidence 9888877433 33 4789999988887653
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0012 Score=57.45 Aligned_cols=107 Identities=6% Similarity=-0.021 Sum_probs=71.5
Q ss_pred eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHH
Q psy7344 97 QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176 (240)
Q Consensus 97 ~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~ 176 (240)
..++++++++...+ ..|+++. +...+..++.+.++.++++|.+|.+ ++.+|+.+.++.+.
T Consensus 60 ~~~~~~i~~i~~~~---~ipv~~~---GGi~s~~~~~~~l~~Ga~~Viigt~--------------~l~~p~~~~ei~~~ 119 (253)
T PRK02083 60 DTMLDVVERVAEQV---FIPLTVG---GGIRSVEDARRLLRAGADKVSINSA--------------AVANPELISEAADR 119 (253)
T ss_pred cchHHHHHHHHHhC---CCCEEee---CCCCCHHHHHHHHHcCCCEEEEChh--------------HhhCcHHHHHHHHH
Confidence 34688888876654 3565543 6666666777777778999988755 56899999999887
Q ss_pred hh-hccccccCCCCCC--CCeeeEEeee-h-----hcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 177 PN-MVHFVIAEPHCDG--NDINIGCPQM-V-----AKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 177 ~~-~~~~~i~~~~~~~--~~~pvsvK~r-~-----~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.. +.+ +.+-|+.+ ...|+++|+| + .+..++++.+++ |++.+.+|...
T Consensus 120 ~g~~~i--v~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~ 176 (253)
T PRK02083 120 FGSQCI--VVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMD 176 (253)
T ss_pred cCCCCE--EEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCc
Confidence 62 111 11111110 0136789999 2 145788999999 99999997733
|
|
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.002 Score=52.21 Aligned_cols=90 Identities=12% Similarity=-0.048 Sum_probs=64.7
Q ss_pred CCceeEEeecCCHHHHHH-HHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTE-AAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~-aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
..|+++++..++..+... +++.+ +.++|+|++|.+|+.. ++...++++++++.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~--------------~~~~~~~~~~i~~~----------- 111 (200)
T cd04722 57 DLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYL--------------AREDLELIRELREA----------- 111 (200)
T ss_pred CCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCCcH--------------HHHHHHHHHHHHHh-----------
Confidence 478999998877665443 23444 4589999999998643 56667777777776
Q ss_pred C-CeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccccccc
Q psy7344 192 N-DINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAMLV 229 (240)
Q Consensus 192 ~-~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~~~~ 229 (240)
. ++|+.+|++.....+.+. +.+ |++.|.+++++..+.
T Consensus 112 ~~~~~v~~~~~~~~~~~~~~-~~~~g~d~i~~~~~~~~~~ 150 (200)
T cd04722 112 VPDVKVVVKLSPTGELAAAA-AEEAGVDEVGLGNGGGGGG 150 (200)
T ss_pred cCCceEEEEECCCCccchhh-HHHcCCCEEEEcCCcCCCC
Confidence 3 689999998432211111 677 999999999988765
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0029 Score=53.99 Aligned_cols=106 Identities=11% Similarity=0.061 Sum_probs=71.0
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
+.++++++...+ ..|+.+ ++.+.+..++.+.++.|++.|-++. .++.+|+.+.++++...
T Consensus 60 ~~~~i~~i~~~~---~~pi~~---ggGI~~~ed~~~~~~~Ga~~vvlgs--------------~~l~d~~~~~~~~~~~g 119 (230)
T TIGR00007 60 NLPVIKKIVRET---GVPVQV---GGGIRSLEDVEKLLDLGVDRVIIGT--------------AAVENPDLVKELLKEYG 119 (230)
T ss_pred cHHHHHHHHHhc---CCCEEE---eCCcCCHHHHHHHHHcCCCEEEECh--------------HHhhCHHHHHHHHHHhC
Confidence 356777765432 345544 3555666667777777888875533 35689999999998764
Q ss_pred hccccccCCCCCCCCeeeEEeee--------h-----hcHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 179 MVHFVIAEPHCDGNDINIGCPQM--------V-----AKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 179 ~~~~~i~~~~~~~~~~pvsvK~r--------~-----~~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
.. .+.++++.| + .+..++++.+++ |++.+++|.+++.+.+ .+ .||+
T Consensus 120 ~~------------~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~--~g-~~~~ 179 (230)
T TIGR00007 120 PE------------RIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDISRDGTL--SG-PNFE 179 (230)
T ss_pred CC------------cEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCc--CC-CCHH
Confidence 21 234444444 1 245789999999 9999999999998764 33 5664
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0018 Score=59.57 Aligned_cols=170 Identities=11% Similarity=0.054 Sum_probs=93.6
Q ss_pred CCCchhHHHHHHHhhcccCCCceeecccccccCCCcccc--ccCchhhhhhhhcccce--ee-eC-ChhhHHHhhhcccC
Q psy7344 39 QDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGID--INIGCPQMVAKRGHYGA--YL-QD-DWPLLTELGFKTRS 112 (240)
Q Consensus 39 ~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~d--l~~gC~~~i~~~g~~ga--~l-~~-d~eli~~i~~~~~~ 112 (240)
+.+|+++.+++.++. ....+ ++.+..-....+..+ +..| +..+++|+|+.. +. .. +|..+.+.+.+.
T Consensus 114 P~~p~l~~~iv~~~~--~~~V~--v~vr~~~~~~~e~a~~l~eaG-vd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~-- 186 (368)
T PRK08649 114 PIKPELITERIAEIR--DAGVI--VAVSLSPQRAQELAPTVVEAG-VDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL-- 186 (368)
T ss_pred CCCHHHHHHHHHHHH--hCeEE--EEEecCCcCHHHHHHHHHHCC-CCEEEEeccchhhhccCCcCCHHHHHHHHHHC--
Confidence 457888888888887 22333 332210000111111 2556 567888888754 22 22 577666655543
Q ss_pred CCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 113 HMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 113 ~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
+.|+++ ++..+...+.++++.|+|+|++++|.-...+.+.-.|.. ......+.++.++.++..... .+.
T Consensus 187 -~ipVIa----G~V~t~e~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g~g-~p~~~ai~~~~~a~~~~l~~~-----~~~ 255 (368)
T PRK08649 187 -DVPVIV----GGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLGIG-VPMATAIADVAAARRDYLDET-----GGR 255 (368)
T ss_pred -CCCEEE----eCCCCHHHHHHHHHcCCCEEEECCCCCcCCCCcccCCCC-cCHHHHHHHHHHHHHHhhhhh-----cCC
Confidence 467655 445555566667777999999998832111111111111 122233444443322210000 002
Q ss_pred CeeeEEeeehhcHHHHHHHHhCCCCeEEEecccc
Q psy7344 193 DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMA 226 (240)
Q Consensus 193 ~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~~ 226 (240)
++||.+-..+.+-.++++++..|||++.+-.|..
T Consensus 256 ~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa 289 (368)
T PRK08649 256 YVHVIADGGIGTSGDIAKAIACGADAVMLGSPLA 289 (368)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCeecccchhc
Confidence 5788888888888999999988999999955543
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0065 Score=54.96 Aligned_cols=129 Identities=12% Similarity=0.011 Sum_probs=77.4
Q ss_pred ecccccccCCCccccccCchhhhhhhhcccceee-eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCC
Q psy7344 63 MGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYL-QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCD 141 (240)
Q Consensus 63 vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l-~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d 141 (240)
++.+.+.+||...++..+. ..++..|+.|... ...|+-..+.+..++. ...+....+.+++....+..+++.+++
T Consensus 33 l~~Piv~apM~~vt~~~ma--~ava~~GglGvi~~~~~~~~~~~~i~~vk~--~l~v~~~~~~~~~~~~~~~~l~eagv~ 108 (325)
T cd00381 33 LNIPLVSAPMDTVTESEMA--IAMARLGGIGVIHRNMSIEEQAEEVRKVKG--RLLVGAAVGTREDDKERAEALVEAGVD 108 (325)
T ss_pred cCCCEEecCCCcCCcHHHH--HHHHHCCCEEEEeCCCCHHHHHHHHHHhcc--CceEEEecCCChhHHHHHHHHHhcCCC
Confidence 3445677899998887774 6677777766643 2234444444433331 222222233455555566666777899
Q ss_pred EEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEE
Q psy7344 142 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLT 220 (240)
Q Consensus 142 ~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~it 220 (240)
.|.++.+- | +++...++++.+++.. .++||.+ -.-.+.+.++.+.+ |+|+|.
T Consensus 109 ~I~vd~~~----------G-----~~~~~~~~i~~ik~~~----------p~v~Vi~--G~v~t~~~A~~l~~aGaD~I~ 161 (325)
T cd00381 109 VIVIDSAH----------G-----HSVYVIEMIKFIKKKY----------PNVDVIA--GNVVTAEAARDLIDAGADGVK 161 (325)
T ss_pred EEEEECCC----------C-----CcHHHHHHHHHHHHHC----------CCceEEE--CCCCCHHHHHHHHhcCCCEEE
Confidence 99988751 1 2244556777777651 1245544 11245677888888 999999
Q ss_pred Ee
Q psy7344 221 EL 222 (240)
Q Consensus 221 ih 222 (240)
+|
T Consensus 162 vg 163 (325)
T cd00381 162 VG 163 (325)
T ss_pred EC
Confidence 86
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0025 Score=58.18 Aligned_cols=151 Identities=14% Similarity=0.134 Sum_probs=92.0
Q ss_pred ccCCCCeecccCC---------CchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCccccccCc
Q psy7344 11 TEPHCDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIG 81 (240)
Q Consensus 11 ~~~~~d~id~N~g---------cP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~dl~~g 81 (240)
.+.|+|.|+|..+ ||...-+...||..|.+...++.+++.++. +....+..+..+.. . .|...
T Consensus 147 ~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR-~~vG~d~~v~iRi~---~---~D~~~- 218 (353)
T cd02930 147 REAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVR-AAVGEDFIIIYRLS---M---LDLVE- 218 (353)
T ss_pred HHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHH-HHcCCCceEEEEec---c---cccCC-
Confidence 4568999999633 897655555577779999999999999998 34333322321100 0 00000
Q ss_pred hhhhhhhhcccceeeeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhccccc
Q psy7344 82 CPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYG 160 (240)
Q Consensus 82 C~~~i~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G 160 (240)
.+.+.+++.++++.+++ ++|.|.+..|-.-..+... .
T Consensus 219 ----------------------------------------~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~--~ 256 (353)
T cd02930 219 ----------------------------------------GGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTI--A 256 (353)
T ss_pred ----------------------------------------CCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccc--c
Confidence 11355667788888876 7899998665211110000 0
Q ss_pred ccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 161 AYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 161 ~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.. ..+.......+.+++. +++||.+-.++.+..++.+.+++ ++|.|.+ ||-
T Consensus 257 ~~--~~~~~~~~~~~~ik~~-----------v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~-gR~ 308 (353)
T cd02930 257 TS--VPRGAFAWATAKLKRA-----------VDIPVIASNRINTPEVAERLLADGDADMVSM-ARP 308 (353)
T ss_pred cc--CCchhhHHHHHHHHHh-----------CCCCEEEcCCCCCHHHHHHHHHCCCCChhHh-hHH
Confidence 00 0011112344445555 67899988888888888888888 8999988 775
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0029 Score=57.38 Aligned_cols=172 Identities=14% Similarity=0.038 Sum_probs=93.4
Q ss_pred CcccCCCchhHHHHHHHhhcccCCCceeecc-----cc-----cc--cC--CCccccccCchhhhhhhhcccceeeeCCh
Q psy7344 35 GAYLQDDWPLLTELVVHFSWVSKNGPLFMGP-----LF-----IA--EP--HCDGIDINIGCPQMVAKRGHYGAYLQDDW 100 (240)
Q Consensus 35 G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~-----~~-----~l--ap--~~~~~dl~~gC~~~i~~~g~~ga~l~~d~ 100 (240)
+++.+++|++.... ..+.+...+.|+.... .. .. .. .++..++++.|++.+...++++.| ..-.
T Consensus 91 ~~~~~~~~~~~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f-~~~l 168 (333)
T TIGR02151 91 QRAALKDPETADTF-EVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNF-KGWL 168 (333)
T ss_pred chhhccChhhHhHH-HHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCH-HHHH
Confidence 34446688866554 4444112456665421 00 00 01 245666777776766555555443 1112
Q ss_pred hhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhh----hc--ccccccccCCHHH-HHH
Q psy7344 101 PLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVA----KR--GHYGAYLQDDWPL-LTN 172 (240)
Q Consensus 101 eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~----~~--~g~G~~l~~~p~~-i~~ 172 (240)
+.++.+...+ +.||+++..|.. ...+.++.+++ |+|+|++.-+-....+ .+ ..+.+....+|-. ..+
T Consensus 169 e~i~~i~~~~---~vPVivK~~g~g--~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~ 243 (333)
T TIGR02151 169 EKIAEICSQL---SVPVIVKEVGFG--ISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAA 243 (333)
T ss_pred HHHHHHHHhc---CCCEEEEecCCC--CCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHH
Confidence 5666666554 589999976543 23566677755 8999999532111100 00 0000112244421 111
Q ss_pred HHHHhhh-ccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 173 LVYSPNM-VHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 173 iv~~~~~-~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
.+..+++ . .++||.+-..+.+..+.++.+..|||++.+ ||.
T Consensus 244 ~l~~~~~~~-----------~~ipVIasGGI~~~~di~kaLalGAd~V~i-gr~ 285 (333)
T TIGR02151 244 SLLEVRSDA-----------PDAPIIASGGLRTGLDVAKAIALGADAVGM-ARP 285 (333)
T ss_pred HHHHHHhcC-----------CCCeEEEECCCCCHHHHHHHHHhCCCeehh-hHH
Confidence 2222222 2 467888888888889999999889999988 664
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.006 Score=52.41 Aligned_cols=114 Identities=7% Similarity=-0.054 Sum_probs=70.0
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
+++.++++.... ..|+++ ++.+.+..++.+.++.|++.|.++.. ++.+|+.+.++++...
T Consensus 64 ~~~~i~~i~~~~---~~~l~v---~GGi~~~~~~~~~~~~Ga~~v~iGs~--------------~~~~~~~~~~i~~~~g 123 (241)
T PRK13585 64 NAEAIEKIIEAV---GVPVQL---GGGIRSAEDAASLLDLGVDRVILGTA--------------AVENPEIVRELSEEFG 123 (241)
T ss_pred cHHHHHHHHHHc---CCcEEE---cCCcCCHHHHHHHHHcCCCEEEEChH--------------HhhChHHHHHHHHHhC
Confidence 356666665432 345544 46666666777777788999877444 5679999999988753
Q ss_pred h-ccccccCCCCCCCCeeeEEeeeh---h-cHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 179 M-VHFVIAEPHCDGNDINIGCPQMV---A-KRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 179 ~-~~~~i~~~~~~~~~~pvsvK~r~---~-~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
. .+ +-+=++ .+.++.+|... . ++.++++.+++ |++.|++|.+++...+ .+ .||+
T Consensus 124 ~~~i--~~sid~--~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~--~g-~~~~ 183 (241)
T PRK13585 124 SERV--MVSLDA--KDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLL--EG-VNTE 183 (241)
T ss_pred CCcE--EEEEEe--eCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCc--CC-CCHH
Confidence 2 10 000000 01122222221 1 67899999999 9999999999876442 33 5664
|
|
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0055 Score=56.64 Aligned_cols=139 Identities=16% Similarity=0.182 Sum_probs=81.7
Q ss_pred CCccccccC---ch--hhhhh-----hhcccceeeeCChhhHHHhhhcccC---CCCceeEEeec---------------
Q psy7344 72 HCDGIDINI---GC--PQMVA-----KRGHYGAYLQDDWPLLTELGFKTRS---HMCGHSLMFCG--------------- 123 (240)
Q Consensus 72 ~~~~~dl~~---gC--~~~i~-----~~g~~ga~l~~d~eli~~i~~~~~~---~~~pvivqi~g--------------- 123 (240)
.+|+++++. || -+++. +.-.||..+.....++.+++.+++. .+.||.+.|..
T Consensus 163 GfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~ 242 (382)
T cd02931 163 GFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGE 242 (382)
T ss_pred CCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcccccccccccc
Confidence 456777766 65 23332 1123454444344555555554443 24577777752
Q ss_pred ------CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 124 ------NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 124 ------~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
.+.++..++++++++ ++|.|++..|-....... ... ....+.....+++.+++. +++||
T Consensus 243 ~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~--~~~-~~~~~~~~~~~~~~ik~~-----------~~~pv 308 (382)
T cd02931 243 EFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWN--HPP-MYQKKGMYLPYCKALKEV-----------VDVPV 308 (382)
T ss_pred ccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccc--cCC-ccCCcchhHHHHHHHHHH-----------CCCCE
Confidence 246778888999976 799999987742111000 000 000111112344445555 56799
Q ss_pred EEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 197 GCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 197 svK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.+-.++.+..+..+.+++ ++|.|.+ ||-
T Consensus 309 i~~G~i~~~~~~~~~l~~g~~D~V~~-gR~ 337 (382)
T cd02931 309 IMAGRMEDPELASEAINEGIADMISL-GRP 337 (382)
T ss_pred EEeCCCCCHHHHHHHHHcCCCCeeee-chH
Confidence 988888888888888999 8999998 875
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0088 Score=52.07 Aligned_cols=114 Identities=8% Similarity=-0.008 Sum_probs=72.8
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
++++++++...+ +.|+.+ ++.+.+..++.+++..|++.|-++.. ++.+|+.++++.+...
T Consensus 62 n~~~i~~i~~~~---~~pv~~---~GGi~s~~d~~~~~~~Ga~~vivgt~--------------~~~~p~~~~~~~~~~~ 121 (254)
T TIGR00735 62 MIDVVERTAETV---FIPLTV---GGGIKSIEDVDKLLRAGADKVSINTA--------------AVKNPELIYELADRFG 121 (254)
T ss_pred hHHHHHHHHHhc---CCCEEE---ECCCCCHHHHHHHHHcCCCEEEEChh--------------HhhChHHHHHHHHHcC
Confidence 467777776543 356543 35566666777777778888887655 5689999999987653
Q ss_pred -hccccccCCCCCCCCeee------EEeee-h-----hcHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 179 -MVHFVIAEPHCDGNDINI------GCPQM-V-----AKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 179 -~~~~~i~~~~~~~~~~pv------svK~r-~-----~~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
+.+ +-+=|+. +.++ -+|+| + .+..++++.+++ |++.|.+|++++... .+-.||+
T Consensus 122 ~~~i--v~slD~~--~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~---~~g~~~~ 189 (254)
T TIGR00735 122 SQCI--VVAIDAK--RVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGT---KSGYDLE 189 (254)
T ss_pred CCCE--EEEEEec--cCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccC---CCCCCHH
Confidence 221 1000000 0111 36777 2 356899999999 999999999988432 2345653
|
|
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0019 Score=59.31 Aligned_cols=144 Identities=12% Similarity=0.046 Sum_probs=87.5
Q ss_pred cccCCCCeecccCCC---------chhhhhccCCCcccCCCchhHHHHHHHhhcccC--CCceeecccccc-cCCC-c-c
Q psy7344 10 ETEPHCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSK--NGPLFMGPLFIA-EPHC-D-G 75 (240)
Q Consensus 10 ~~~~~~d~id~N~gc---------P~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~--~~p~~vk~~~~l-ap~~-~-~ 75 (240)
..+.|+|.|+|+++| |..+.+...||+.|.+...++.+|+.++. +.. +-|+.++..... ..+. + .
T Consensus 153 a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air-~~vG~d~~v~vRis~~~~~~~~~~~g 231 (361)
T cd04747 153 ARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIR-AAVGPDFPIILRFSQWKQQDYTARLA 231 (361)
T ss_pred HHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHcCCCCeEEEEECcccccccccCCC
Confidence 445689999999999 99988888899999999999999999998 343 346666532110 1111 0 1
Q ss_pred ccc-----------cCchhhhhhhhccccee-----eeCChhhHHHhhhcccCCCCceeEEeec----------------
Q psy7344 76 IDI-----------NIGCPQMVAKRGHYGAY-----LQDDWPLLTELGFKTRSHMCGHSLMFCG---------------- 123 (240)
Q Consensus 76 ~dl-----------~~gC~~~i~~~g~~ga~-----l~~d~eli~~i~~~~~~~~~pvivqi~g---------------- 123 (240)
.++ ..| ...+ |..++.+ -..++++...++..+ ..|+++. ++
T Consensus 232 ~~~~e~~~~~~~l~~~g-vd~i--~vs~g~~~~~~~~~~~~~~~~~~k~~~---~~pv~~~-G~i~~~~~~~~~~~~~~~ 304 (361)
T cd04747 232 DTPDELEALLAPLVDAG-VDIF--HCSTRRFWEPEFEGSELNLAGWTKKLT---GLPTITV-GSVGLDGDFIGAFAGDEG 304 (361)
T ss_pred CCHHHHHHHHHHHHHcC-CCEE--EecCCCccCCCcCccchhHHHHHHHHc---CCCEEEE-CCcccccccccccccccc
Confidence 111 111 0111 1112211 011234444444332 3676654 11
Q ss_pred CCHHHHHHHHHHHccC-CCEEEecCCCchhhhhcccccccccCCHHHHHHHHH
Q psy7344 124 NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175 (240)
Q Consensus 124 ~d~~~~~~aa~~le~~-~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~ 175 (240)
+|+.+..++.+.++++ +|.|.++++ ++.||+++.++.+
T Consensus 305 ~~~~~~~~a~~~l~~g~~D~V~~gR~--------------~iadP~~~~k~~~ 343 (361)
T cd04747 305 ASPASLDRLLERLERGEFDLVAVGRA--------------LLSDPAWVAKVRE 343 (361)
T ss_pred cccCCHHHHHHHHHCCCCCeehhhHH--------------HHhCcHHHHHHHc
Confidence 1234666777888874 899988776 6899999888765
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0013 Score=56.82 Aligned_cols=110 Identities=11% Similarity=0.014 Sum_probs=63.8
Q ss_pred ccCCCcccCCCchhHHHHHHHhhcccC--CCce---eecccccccCCCccccc-----cCchhhhhhhhcccce--eeeC
Q psy7344 31 RGHYGAYLQDDWPLLTELVVHFSWVSK--NGPL---FMGPLFIAEPHCDGIDI-----NIGCPQMVAKRGHYGA--YLQD 98 (240)
Q Consensus 31 k~~~G~~l~~~~~l~~~iv~ql~~~~~--~~p~---~vk~~~~lap~~~~~dl-----~~gC~~~i~~~g~~ga--~l~~ 98 (240)
|-..|+.++++|+++.+++.++. +.. +.++ .++...+.....+..++ +.| ...+..|+++.. +.-.
T Consensus 100 kvviGs~~l~~p~l~~~i~~~~~-~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G-~~~iiv~~~~~~g~~~G~ 177 (241)
T PRK14024 100 RVNIGTAALENPEWCARVIAEHG-DRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAG-CSRYVVTDVTKDGTLTGP 177 (241)
T ss_pred EEEECchHhCCHHHHHHHHHHhh-hhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcC-CCEEEEEeecCCCCccCC
Confidence 34678999999999999988775 122 1222 12211111100111111 334 234555554443 3344
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHH---ccCCCEEEecCC
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLA---EPHCDGIDINIG 148 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~l---e~~~d~Idin~g 148 (240)
||+++.++...+ ..|++++ ++..+..++.++. +.|+++|+++++
T Consensus 178 d~~~i~~i~~~~---~ipvias---GGi~s~~D~~~l~~~~~~GvdgV~igra 224 (241)
T PRK14024 178 NLELLREVCART---DAPVVAS---GGVSSLDDLRALAELVPLGVEGAIVGKA 224 (241)
T ss_pred CHHHHHHHHhhC---CCCEEEe---CCCCCHHHHHHHhhhccCCccEEEEeHH
Confidence 799999987653 4788776 6555555655553 358999999888
|
|
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.029 Score=51.32 Aligned_cols=132 Identities=13% Similarity=-0.001 Sum_probs=73.5
Q ss_pred CccccccCchhhhhhhhcccceeeeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHc-cCCCEEEecCCCc-
Q psy7344 73 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAE-PHCDGIDINIGCP- 150 (240)
Q Consensus 73 ~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le-~~~d~Idin~gCP- 150 (240)
++.++++++|+|.+...+++..|-. -.+.++.+...+ +.||++++.|.. .+ .+.++.++ .|+|+|++.-+..
T Consensus 149 adal~l~l~~~qe~~~p~g~~~f~~-~le~i~~i~~~~---~vPVivK~~g~g-~s-~~~a~~l~~~Gvd~I~Vsg~GGt 222 (352)
T PRK05437 149 ADALQIHLNPLQELVQPEGDRDFRG-WLDNIAEIVSAL---PVPVIVKEVGFG-IS-KETAKRLADAGVKAIDVAGAGGT 222 (352)
T ss_pred CCcEEEeCccchhhcCCCCcccHHH-HHHHHHHHHHhh---CCCEEEEeCCCC-Cc-HHHHHHHHHcCCCEEEECCCCCC
Confidence 5667777777676655444332210 024455555443 579999986542 22 45556654 4899999843321
Q ss_pred hhhhhcccccc-----cccCCH-----HHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEE
Q psy7344 151 QMVAKRGHYGA-----YLQDDW-----PLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLT 220 (240)
Q Consensus 151 ~~~~~~~g~G~-----~l~~~p-----~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~it 220 (240)
.........+. ....+| +.+.++.++ . .++||.+-..+.+..+.++.+..|||++.
T Consensus 223 ~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~---~-----------~~ipvia~GGI~~~~dv~k~l~~GAd~v~ 288 (352)
T PRK05437 223 SWAAIENYRARDDRLASYFADWGIPTAQSLLEARSL---L-----------PDLPIIASGGIRNGLDIAKALALGADAVG 288 (352)
T ss_pred CccchhhhhhhccccccccccccCCHHHHHHHHHHh---c-----------CCCeEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 10000000000 011222 233333332 1 35688887778888899999988999998
Q ss_pred Eeccc
Q psy7344 221 ELGKM 225 (240)
Q Consensus 221 ih~R~ 225 (240)
+ ||.
T Consensus 289 i-g~~ 292 (352)
T PRK05437 289 M-AGP 292 (352)
T ss_pred E-hHH
Confidence 8 764
|
|
| >PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) [] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.019 Score=47.38 Aligned_cols=73 Identities=16% Similarity=0.154 Sum_probs=47.2
Q ss_pred HHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHH
Q psy7344 131 EAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYG 209 (240)
Q Consensus 131 ~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~ 209 (240)
+-|+..|+ |+-+||.----|..+-..| |-+-|.||..+++|.++ +.+||.+|.|+..+.+ +
T Consensus 25 eQAkIAE~AGA~AVMaLervPadiR~~G--GVaRMsDP~~I~eI~~a---------------VsIPVMAK~RIGHfvE-A 86 (208)
T PF01680_consen 25 EQAKIAEEAGAVAVMALERVPADIRAAG--GVARMSDPKMIKEIMDA---------------VSIPVMAKVRIGHFVE-A 86 (208)
T ss_dssp HHHHHHHHHT-SEEEE-SS-HHHHHHTT--S---S--HHHHHHHHHH----------------SSEEEEEEETT-HHH-H
T ss_pred HHHHHHHHhCCeEEEEeccCCHhHHhcC--CccccCCHHHHHHHHHh---------------eEeceeeccccceeeh-h
Confidence 34566665 7778886666677653333 45558999999999986 6889999999876554 6
Q ss_pred HHHhC-CCCeEEE
Q psy7344 210 AYLQD-DWPLLTE 221 (240)
Q Consensus 210 ~~l~~-G~~~iti 221 (240)
+.|+. |+|+|--
T Consensus 87 qiLealgVD~IDE 99 (208)
T PF01680_consen 87 QILEALGVDYIDE 99 (208)
T ss_dssp HHHHHTT-SEEEE
T ss_pred hhHHHhCCceecc
Confidence 88999 9999865
|
Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A .... |
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.051 Score=46.25 Aligned_cols=123 Identities=13% Similarity=0.007 Sum_probs=70.3
Q ss_pred cccccCCCccccccCchhhhhhhhcccceeeeC--ChhhHHHhhhcccCC-CCceeEEeecCCH-HHHHHHHHHHc-cCC
Q psy7344 66 LFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD--DWPLLTELGFKTRSH-MCGHSLMFCGNDS-KNLTEAAKLAE-PHC 140 (240)
Q Consensus 66 ~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~--d~eli~~i~~~~~~~-~~pvivqi~g~d~-~~~~~aa~~le-~~~ 140 (240)
+.+++||++.+|..+. ..+...|..|..... +.+.+.+...++++. +.|+.+++..++. ....+.++.+. .++
T Consensus 4 pi~~a~m~g~~~~~~~--~~~~~~G~ig~i~~~~~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~ 81 (236)
T cd04730 4 PIIQAPMAGVSTPELA--AAVSNAGGLGFIGAGYLTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGV 81 (236)
T ss_pred CEECCCCCCCCCHHHH--HHHHhCCCccccCCCCCCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhCCC
Confidence 4578899999988875 555544422222111 223333333333222 2477788887765 34455555554 489
Q ss_pred CEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeE
Q psy7344 141 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 141 d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~i 219 (240)
|+|.++.+++ ++. ++.+++ ..+++.++.. +.+.++.+.+ |+|+|
T Consensus 82 d~v~l~~~~~----------------~~~----~~~~~~------------~~i~~i~~v~---~~~~~~~~~~~gad~i 126 (236)
T cd04730 82 PVVSFSFGPP----------------AEV----VERLKA------------AGIKVIPTVT---SVEEARKAEAAGADAL 126 (236)
T ss_pred CEEEEcCCCC----------------HHH----HHHHHH------------cCCEEEEeCC---CHHHHHHHHHcCCCEE
Confidence 9999976621 222 223222 2456666543 2345666777 99999
Q ss_pred EEeccc
Q psy7344 220 TELGKM 225 (240)
Q Consensus 220 tih~R~ 225 (240)
.+|++.
T Consensus 127 ~~~~~~ 132 (236)
T cd04730 127 VAQGAE 132 (236)
T ss_pred EEeCcC
Confidence 999983
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.045 Score=50.33 Aligned_cols=100 Identities=13% Similarity=-0.011 Sum_probs=65.9
Q ss_pred CChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHh
Q psy7344 98 DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSP 177 (240)
Q Consensus 98 ~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~ 177 (240)
.+|+.|+.+.... +.|++++ . +....++.+..+.|+|+|++.-.. . +.-++ ....++.+.++.+++
T Consensus 215 ~~w~~i~~l~~~~---~~PvivK-G---v~~~eda~~a~~~Gvd~I~VS~HG--G---rq~~~--~~a~~~~L~ei~~av 280 (367)
T TIGR02708 215 LSPRDIEEIAGYS---GLPVYVK-G---PQCPEDADRALKAGASGIWVTNHG--G---RQLDG--GPAAFDSLQEVAEAV 280 (367)
T ss_pred CCHHHHHHHHHhc---CCCEEEe-C---CCCHHHHHHHHHcCcCEEEECCcC--c---cCCCC--CCcHHHHHHHHHHHh
Confidence 3588888886543 4799988 1 222334555556799999985442 1 11111 135677777777664
Q ss_pred hhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 178 NMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 178 ~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
.. ++||.+-..+.+-.++++++.-||+++.+ ||.
T Consensus 281 ~~-------------~i~vi~dGGIr~g~Dv~KaLalGAd~V~i-gR~ 314 (367)
T TIGR02708 281 DK-------------RVPIVFDSGVRRGQHVFKALASGADLVAL-GRP 314 (367)
T ss_pred CC-------------CCcEEeeCCcCCHHHHHHHHHcCCCEEEE-cHH
Confidence 32 35777776777788899888889999988 886
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.063 Score=48.18 Aligned_cols=123 Identities=7% Similarity=-0.059 Sum_probs=70.3
Q ss_pred ccccCCCccccccCchhhhhhhhcccceee--eCChhhHHHhhhcccC-CCCceeEEeecCCHHHHHHHHH-HHccCCCE
Q psy7344 67 FIAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELGFKTRS-HMCGHSLMFCGNDSKNLTEAAK-LAEPHCDG 142 (240)
Q Consensus 67 ~~lap~~~~~dl~~gC~~~i~~~g~~ga~l--~~d~eli~~i~~~~~~-~~~pvivqi~g~d~~~~~~aa~-~le~~~d~ 142 (240)
.+.+||...++-.+ ...++..|+.|..- ...++.+++-..+++. .+.|+-+++....+. +.+..+ .++.+++.
T Consensus 14 ii~apM~~~s~~~l--a~avs~aGglG~l~~~~~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~-~~~~~~~~~~~~v~~ 90 (307)
T TIGR03151 14 IFQGGMAWVATGSL--AAAVSNAGGLGIIGAGNAPPDVVRKEIRKVKELTDKPFGVNIMLLSPF-VDELVDLVIEEKVPV 90 (307)
T ss_pred EEcCCCCCCCCHHH--HHHHHhCCCcceeccccCCHHHHHHHHHHHHHhcCCCcEEeeecCCCC-HHHHHHHHHhCCCCE
Confidence 46678887665444 24566667666532 1234555443333322 246888887543333 233444 34667888
Q ss_pred EEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEE
Q psy7344 143 IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 143 Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~iti 221 (240)
|.++.|.| . ++++.+++. .+.|.+.+ .+.+.++.+++ |+|.|++
T Consensus 91 v~~~~g~p-----------------~---~~i~~lk~~------------g~~v~~~v---~s~~~a~~a~~~GaD~Ivv 135 (307)
T TIGR03151 91 VTTGAGNP-----------------G---KYIPRLKEN------------GVKVIPVV---ASVALAKRMEKAGADAVIA 135 (307)
T ss_pred EEEcCCCc-----------------H---HHHHHHHHc------------CCEEEEEc---CCHHHHHHHHHcCCCEEEE
Confidence 87765532 1 234444432 33455433 34567888999 9999999
Q ss_pred eccccc
Q psy7344 222 LGKMAM 227 (240)
Q Consensus 222 h~R~~~ 227 (240)
|||...
T Consensus 136 ~g~eag 141 (307)
T TIGR03151 136 EGMESG 141 (307)
T ss_pred ECcccC
Confidence 999443
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.019 Score=51.04 Aligned_cols=137 Identities=20% Similarity=0.190 Sum_probs=77.3
Q ss_pred cCCCccccccCchhhhhhhhcccceeeeCChhhHHHhhhcccC-CCCceeEEeec--CCHHHHHHHHHHHccCCCEEE-e
Q psy7344 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRS-HMCGHSLMFCG--NDSKNLTEAAKLAEPHCDGID-I 145 (240)
Q Consensus 70 ap~~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~~-~~~pvivqi~g--~d~~~~~~aa~~le~~~d~Id-i 145 (240)
++.+|++++|+.||..-. +..+..++++...+...++. .+.|++++|.- .+......+.+..+.++++|. +
T Consensus 122 ~~~ad~lElN~ScPn~~~-----~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~ 196 (295)
T PF01180_consen 122 EAGADALELNLSCPNVPG-----GRPFGQDPELVAEIVRAVREAVDIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAI 196 (295)
T ss_dssp HHHCSEEEEESTSTTSTT-----SGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE-
T ss_pred cCcCCceEEEeeccCCCC-----ccccccCHHHHHHHHHHHHhccCCCEEEEecCCCCchHHHHHHHHhhccceeEEEEe
Confidence 366899999999987431 11222334555555433332 25899999976 355555555555566888877 3
Q ss_pred cC--CCc---------hhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC
Q psy7344 146 NI--GCP---------QMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD 214 (240)
Q Consensus 146 n~--gCP---------~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~ 214 (240)
|. ..+ ......+|+.. ..-....-+.++.+++.+ +.++|+..=.-+.+..+..+.+..
T Consensus 197 Nt~~~~~~id~~~~~~~~~~~~gGlSG--~~i~p~aL~~V~~~~~~~---------~~~i~Iig~GGI~s~~da~e~l~a 265 (295)
T PF01180_consen 197 NTFGQGDAIDLETRRPVLGNGFGGLSG--PAIRPIALRWVRELRKAL---------GQDIPIIGVGGIHSGEDAIEFLMA 265 (295)
T ss_dssp --EEEEE-EETTTTEESSSGGEEEEEE--GGGHHHHHHHHHHHHHHT---------TTSSEEEEESS--SHHHHHHHHHH
T ss_pred cCccCcccccchhcceeeccccCCcCc--hhhhhHHHHHHHHHHhcc---------ccceEEEEeCCcCCHHHHHHHHHh
Confidence 32 111 11001122211 122234445666666661 013788887778888899998888
Q ss_pred CCCeEEEe
Q psy7344 215 DWPLLTEL 222 (240)
Q Consensus 215 G~~~itih 222 (240)
||+.+.++
T Consensus 266 GA~~Vqv~ 273 (295)
T PF01180_consen 266 GASAVQVC 273 (295)
T ss_dssp TESEEEES
T ss_pred CCCHheec
Confidence 99999883
|
DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A .... |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.21 Score=45.29 Aligned_cols=143 Identities=13% Similarity=0.022 Sum_probs=82.6
Q ss_pred cccccccCCCccccccCchhhhhhhhcccceeeeCChhhHHHhhhcccCCCCceeEEeec-CCHHHHHHHHHHHccC--C
Q psy7344 64 GPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCG-NDSKNLTEAAKLAEPH--C 140 (240)
Q Consensus 64 k~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi~g-~d~~~~~~aa~~le~~--~ 140 (240)
+.+.+.+.|.. .+|..-......+|..+.....+++.........++ ..+++.+.- -+++++.++.++++.+ +
T Consensus 37 ~~P~~inAM~t--~iN~~LA~~a~~~G~~~~~~k~~~e~~~~~~r~~~~--~~l~v~~~vg~~~~~~~~~~~Lv~ag~~~ 112 (326)
T PRK05458 37 KLPVVPANMQT--IIDEKIAEWLAENGYFYIMHRFDPEARIPFIKDMHE--QGLIASISVGVKDDEYDFVDQLAAEGLTP 112 (326)
T ss_pred cCcEEEecccc--hhHHHHHHHHHHcCCEEEEecCCHHHHHHHHHhccc--cccEEEEEecCCHHHHHHHHHHHhcCCCC
Confidence 33445566643 345431233344443333333356655544443332 234666543 3677888888888885 4
Q ss_pred CEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeE
Q psy7344 141 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 141 d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~i 219 (240)
|.|-|-..= .+-+.+.++++.+++.. .++||.++--. +.+-++.|.+ |+|.+
T Consensus 113 d~i~iD~a~---------------gh~~~~~e~I~~ir~~~----------p~~~vi~g~V~--t~e~a~~l~~aGad~i 165 (326)
T PRK05458 113 EYITIDIAH---------------GHSDSVINMIQHIKKHL----------PETFVIAGNVG--TPEAVRELENAGADAT 165 (326)
T ss_pred CEEEEECCC---------------CchHHHHHHHHHHHhhC----------CCCeEEEEecC--CHHHHHHHHHcCcCEE
Confidence 988775551 24456667788887762 23677775321 5567788888 99999
Q ss_pred EEe---cccccc---cCCCCCCCCCC
Q psy7344 220 TEL---GKMAML---VGILDNTGSWT 239 (240)
Q Consensus 220 tih---~R~~~~---~~~~~~~adw~ 239 (240)
.++ ||+..+ .+ .+..||+
T Consensus 166 ~vg~~~G~~~~t~~~~g--~~~~~w~ 189 (326)
T PRK05458 166 KVGIGPGKVCITKIKTG--FGTGGWQ 189 (326)
T ss_pred EECCCCCcccccccccC--CCCCccH
Confidence 998 555222 22 3566884
|
|
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.012 Score=53.51 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=34.7
Q ss_pred CCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCC-------Cceeec
Q psy7344 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKN-------GPLFMG 64 (240)
Q Consensus 14 ~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~-------~p~~vk 64 (240)
++|.|.||..||.-. |...+++++.+.+++.++. +..+ .|+++|
T Consensus 166 ~ad~iElNlScPn~~------~~~~~~~~~~~~~i~~~V~-~~~~~~~~~~~~Pv~vK 216 (335)
T TIGR01036 166 LADYLVVNVSSPNTP------GLRDLQYKAELRDLLTAVK-QEQDGLRRVHRVPVLVK 216 (335)
T ss_pred hCCEEEEEccCCCCC------CcccccCHHHHHHHHHHHH-HHHHhhhhccCCceEEE
Confidence 479999999999853 2344688999999999987 3444 899987
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.043 Score=50.43 Aligned_cols=88 Identities=18% Similarity=0.269 Sum_probs=60.0
Q ss_pred HHHHHHHHHHcc-CCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+++.++|++..+ |+|||||..+- |..--..-.||.++-..--.+.+|++++++++ +-+.||
T Consensus 149 ~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~v---------g~~~~v 219 (363)
T COG1902 149 EDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAV---------GADFPV 219 (363)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHh---------CCCceE
Confidence 456677777755 89999996542 11111223466665444556789999999983 235689
Q ss_pred EEeee---h--------hcHHHHHHHHhC-C-CCeEEEec
Q psy7344 197 GCPQM---V--------AKRGHYGAYLQD-D-WPLLTELG 223 (240)
Q Consensus 197 svK~r---~--------~~~~~~~~~l~~-G-~~~itih~ 223 (240)
.+++. + ++..++++.|++ | +|.|.+-+
T Consensus 220 g~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~ 259 (363)
T COG1902 220 GVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSE 259 (363)
T ss_pred EEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeec
Confidence 98888 2 245789999999 9 79988743
|
|
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.16 Score=45.96 Aligned_cols=130 Identities=13% Similarity=-0.020 Sum_probs=73.3
Q ss_pred ccccccCCCccccccCchhhhhhhhcccceeeeCChhhHHHhhhcccCCCCceeEEee-cCCHHHHHHHHHHHccC--CC
Q psy7344 65 PLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFC-GNDSKNLTEAAKLAEPH--CD 141 (240)
Q Consensus 65 ~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi~-g~d~~~~~~aa~~le~~--~d 141 (240)
.+.+.+.|.. .+|..-......+|..+.....++|...+.+.+.++.. +.+.+. |-.++++..+.++++.+ +|
T Consensus 35 ~P~~inAM~t--~in~~LA~~a~~~G~~~i~hK~~~E~~~sfvrk~k~~~--L~v~~SvG~t~e~~~r~~~lv~a~~~~d 110 (321)
T TIGR01306 35 LPVVPANMQT--IIDEKLAEQLAENGYFYIMHRFDEESRIPFIKDMQERG--LFASISVGVKACEYEFVTQLAEEALTPE 110 (321)
T ss_pred CcEEeeccch--hhhHHHHHHHHHcCCEEEEecCCHHHHHHHHHhccccc--cEEEEEcCCCHHHHHHHHHHHhcCCCCC
Confidence 3445556643 34443223344444444433435554333333333322 233442 34677778888888876 57
Q ss_pred EEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEE
Q psy7344 142 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLT 220 (240)
Q Consensus 142 ~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~it 220 (240)
.|-+-.. |+ +-..+.+.++++++. .+.|..++--+ .+.+.++.|.+ |+|+|.
T Consensus 111 ~i~~D~a-------hg--------~s~~~~~~i~~i~~~-----------~p~~~vi~GnV-~t~e~a~~l~~aGad~I~ 163 (321)
T TIGR01306 111 YITIDIA-------HG--------HSNSVINMIKHIKTH-----------LPDSFVIAGNV-GTPEAVRELENAGADATK 163 (321)
T ss_pred EEEEeCc-------cC--------chHHHHHHHHHHHHh-----------CCCCEEEEecC-CCHHHHHHHHHcCcCEEE
Confidence 6544333 11 334555677777776 44454454444 37788999999 999999
Q ss_pred Ee---ccc
Q psy7344 221 EL---GKM 225 (240)
Q Consensus 221 ih---~R~ 225 (240)
++ ||+
T Consensus 164 V~~G~G~~ 171 (321)
T TIGR01306 164 VGIGPGKV 171 (321)
T ss_pred ECCCCCcc
Confidence 99 774
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.017 Score=52.46 Aligned_cols=86 Identities=17% Similarity=0.309 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcc-CCCEEEecCCCchh-------hh--hcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINIGCPQM-------VA--KRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~gCP~~-------~~--~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+++.++|+.+.+ |+|||+|+.+.-.- .+ ..-.||..+-..--.+.+|++++++.+ +.+.||
T Consensus 149 ~~f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~v---------g~d~~v 219 (341)
T PF00724_consen 149 EDFAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAV---------GPDFPV 219 (341)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHH---------TGGGEE
T ss_pred HHHHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHh---------cCCceE
Confidence 456677777755 89999998764211 11 223466655444556789999999873 257899
Q ss_pred EEeeeh----------hcHHHHHHHHhC-CCCeEEE
Q psy7344 197 GCPQMV----------AKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 197 svK~r~----------~~~~~~~~~l~~-G~~~iti 221 (240)
.+|+.. +++.++++.+++ |+|.+.+
T Consensus 220 ~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~ 255 (341)
T PF00724_consen 220 GVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDV 255 (341)
T ss_dssp EEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEE
T ss_pred EEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccc
Confidence 999992 345677899999 9988753
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.18 Score=44.78 Aligned_cols=98 Identities=9% Similarity=-0.071 Sum_probs=61.9
Q ss_pred CCceeEEe-ecCCHHHHHHHHHHHcc-CCCEEEecCC-----CchhhhhcccccccccCCHHHHHHHHHHhhhccccccC
Q psy7344 114 MCGHSLMF-CGNDSKNLTEAAKLAEP-HCDGIDINIG-----CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAE 186 (240)
Q Consensus 114 ~~pvivqi-~g~d~~~~~~aa~~le~-~~d~Idin~g-----CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~ 186 (240)
..||++-+ .|+++....+.++.+++ |+.||.|-=. |.+. ++.|..-+-..+...+-+++++++-
T Consensus 78 ~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~----~~~~~~~l~s~ee~~~kI~Aa~~a~----- 148 (285)
T TIGR02320 78 TKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLF----GNDVAQPQASVEEFCGKIRAGKDAQ----- 148 (285)
T ss_pred CCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCcccccc----CCCCcccccCHHHHHHHHHHHHHhc-----
Confidence 57998887 34688888888888765 8999998332 3221 1222222334455445555555430
Q ss_pred CCCCCCCeeeEEeee-------hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 187 PHCDGNDINIGCPQM-------VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 187 ~~~~~~~~pvsvK~r-------~~~~~~~~~~l~~-G~~~itih~ 223 (240)
.+.+++|.+.+. ++++++-+++..+ |||.|.+++
T Consensus 149 ---~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~ 190 (285)
T TIGR02320 149 ---TTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHS 190 (285)
T ss_pred ---cCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecC
Confidence 013566666533 4567888888999 999999995
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.1 Score=47.19 Aligned_cols=131 Identities=14% Similarity=0.029 Sum_probs=71.0
Q ss_pred CccccccCchhhhhhhhcccceeeeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHc-cCCCEEEecCCCch
Q psy7344 73 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAE-PHCDGIDINIGCPQ 151 (240)
Q Consensus 73 ~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le-~~~d~Idin~gCP~ 151 (240)
++++++++.|++......++..|- .-.+.++.+...+ +.|++++..|.. .+ .+.++.++ .|+|+|++.-+..-
T Consensus 141 adalel~l~~~q~~~~~~~~~df~-~~~~~i~~l~~~~---~vPVivK~~g~g-~s-~~~a~~l~~~Gvd~I~vsG~GGt 214 (326)
T cd02811 141 ADALAIHLNPLQEAVQPEGDRDFR-GWLERIEELVKAL---SVPVIVKEVGFG-IS-RETAKRLADAGVKAIDVAGAGGT 214 (326)
T ss_pred CCcEEEeCcchHhhcCCCCCcCHH-HHHHHHHHHHHhc---CCCEEEEecCCC-CC-HHHHHHHHHcCCCEEEECCCCCC
Confidence 456666777666554433322211 0014455554433 579999985542 22 35556664 48999998543221
Q ss_pred hhhh-cccccc-------cccCCH-----HHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCe
Q psy7344 152 MVAK-RGHYGA-------YLQDDW-----PLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPL 218 (240)
Q Consensus 152 ~~~~-~~g~G~-------~l~~~p-----~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~ 218 (240)
..+. ..+.+. ....+| +.+.++ ++.+ .++||.+-..+.+-.+.++.+..||++
T Consensus 215 ~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~----~~~~----------~~ipIiasGGIr~~~dv~kal~lGAd~ 280 (326)
T cd02811 215 SWARVENYRAKDSDQRLAEYFADWGIPTAASLLEV----RSAL----------PDLPLIASGGIRNGLDIAKALALGADL 280 (326)
T ss_pred cccccccccccccccccccccccccccHHHHHHHH----HHHc----------CCCcEEEECCCCCHHHHHHHHHhCCCE
Confidence 1110 000110 111222 233333 2220 256888877788888999999889999
Q ss_pred EEEecc
Q psy7344 219 LTELGK 224 (240)
Q Consensus 219 itih~R 224 (240)
+.+ +|
T Consensus 281 V~i-~~ 285 (326)
T cd02811 281 VGM-AG 285 (326)
T ss_pred EEE-cH
Confidence 998 66
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.062 Score=49.33 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHcc-CCCEEEecCCCchhhh---------hcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 126 SKNLTEAAKLAEP-HCDGIDINIGCPQMVA---------KRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 126 ~~~~~~aa~~le~-~~d~Idin~gCP~~~~---------~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++++.++|+.+.+ |+|||+|+.+--.-.. ..-.||..+-..--.+.+|++++++.+ +.+ .
T Consensus 158 i~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~v---------g~~-~ 227 (362)
T PRK10605 158 VNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEW---------GAD-R 227 (362)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHc---------CCC-e
Confidence 3457778887765 8999999866211111 112366655444556689999999873 123 3
Q ss_pred eEEeee-------------hhc-HHHHHHHHhC-CCCeEEEe
Q psy7344 196 IGCPQM-------------VAK-RGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 196 vsvK~r-------------~~~-~~~~~~~l~~-G~~~itih 222 (240)
|.+|+. .++ +.++++.|++ |+|+|.+-
T Consensus 228 igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs 269 (362)
T PRK10605 228 IGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMS 269 (362)
T ss_pred EEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEec
Confidence 667663 133 5788999999 99999884
|
|
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.1 Score=43.52 Aligned_cols=84 Identities=20% Similarity=0.177 Sum_probs=55.2
Q ss_pred EEeecCCHHHHHHHHHHHcc-CCCEEEecC-CCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 119 LMFCGNDSKNLTEAAKLAEP-HCDGIDINI-GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 119 vqi~g~d~~~~~~aa~~le~-~~d~Idin~-gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
++|...|+..+.+.++.+.+ |+|.|.+.. -+|.- ..+...++.++++.+ . .+.|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~--------~~~~~~~~~v~~i~~----~-----------~~~~v 59 (210)
T TIGR01163 3 PSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFV--------PNLTFGPPVLEALRK----Y-----------TDLPI 59 (210)
T ss_pred chhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC--------CCcccCHHHHHHHHh----c-----------CCCcE
Confidence 35566788888999888876 799999962 11221 012234555555553 2 34465
Q ss_pred EEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 197 GCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 197 svK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.+=+.+.+..++++.+.+ |+|.|++|+..
T Consensus 60 ~v~lm~~~~~~~~~~~~~~gadgv~vh~~~ 89 (210)
T TIGR01163 60 DVHLMVENPDRYIEDFAEAGADIITVHPEA 89 (210)
T ss_pred EEEeeeCCHHHHHHHHHHcCCCEEEEccCC
Confidence 444444466788888889 99999999964
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.21 Score=43.27 Aligned_cols=102 Identities=12% Similarity=-0.038 Sum_probs=64.3
Q ss_pred CCceeEEee--cCCHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCC
Q psy7344 114 MCGHSLMFC--GNDSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCD 190 (240)
Q Consensus 114 ~~pvivqi~--g~d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~ 190 (240)
..|+++-+- .++++...+.++.+. .|+++|.|.=+...+. .+++|..-+-.++...+.+++++++. .
T Consensus 69 ~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~--~g~~~~~~~~~~ee~~~ki~aa~~a~--------~ 138 (243)
T cd00377 69 DLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKK--CGHHGGKVLVPIEEFVAKIKAARDAR--------D 138 (243)
T ss_pred cCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCcc--ccCCCCCeecCHHHHHHHHHHHHHHH--------h
Confidence 578888763 247777777777765 4899999954432221 12223333445555555555555541 1
Q ss_pred C-CCeeeEEee--------ehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 191 G-NDINIGCPQ--------MVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 191 ~-~~~pvsvK~--------r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+ .+++|.+.+ .++++++-++...+ |||.+.+|+-+
T Consensus 139 ~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~ 183 (243)
T cd00377 139 DLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK 183 (243)
T ss_pred ccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 1 245666652 25567888888999 99999999875
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.048 Score=46.88 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=54.0
Q ss_pred HHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHH
Q psy7344 131 EAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYG 209 (240)
Q Consensus 131 ~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~ 209 (240)
+-|+..|+ |+-+||-----|..+-..+ |-+-|.||..+++|..+ +.+||.+|.|+..+.+ +
T Consensus 31 EQA~IAE~aGAvAVMaLervPaDiR~aG--GVaRMaDp~~i~eim~a---------------VsIPVMAKvRIGH~~E-A 92 (296)
T COG0214 31 EQARIAEEAGAVAVMALERVPADIRAAG--GVARMADPKMIEEIMDA---------------VSIPVMAKVRIGHFVE-A 92 (296)
T ss_pred HHHHHHHhcCceeEeehhhCcHHHHhcc--CccccCCHHHHHHHHHh---------------cccceeeeeecchhHH-H
Confidence 44566665 7778886666687653333 45568999999999986 6889999999765443 6
Q ss_pred HHHhC-CCCeEEE
Q psy7344 210 AYLQD-DWPLLTE 221 (240)
Q Consensus 210 ~~l~~-G~~~iti 221 (240)
+.|+. |+|.|--
T Consensus 93 ~iLealgVD~IDE 105 (296)
T COG0214 93 QILEALGVDMIDE 105 (296)
T ss_pred HHHHHhCCCcccc
Confidence 78899 9999853
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.27 Score=40.00 Aligned_cols=105 Identities=7% Similarity=-0.062 Sum_probs=66.9
Q ss_pred hhhHHHhhhcccCCCCceeEEeecCC----HHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHH
Q psy7344 100 WPLLTELGFKTRSHMCGHSLMFCGND----SKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174 (240)
Q Consensus 100 ~eli~~i~~~~~~~~~pvivqi~g~d----~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv 174 (240)
.++++.+.........|+++.+..++ .++..+.++.+.+ |+|+|++-. |... ....+++.+.+.+
T Consensus 34 g~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~--~~~~--------~~~~~~~~~~~~~ 103 (201)
T cd00945 34 PGYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVI--NIGS--------LKEGDWEEVLEEI 103 (201)
T ss_pred HHHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEec--cHHH--------HhCCCHHHHHHHH
Confidence 46666655444321478899987776 7777777777655 899999832 2211 0111467777777
Q ss_pred HHhhhccccccCCCCCCCCeeeEEeee------hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 175 YSPNMVHFVIAEPHCDGNDINIGCPQM------VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 175 ~~~~~~~~~i~~~~~~~~~~pvsvK~r------~~~~~~~~~~l~~-G~~~itih~ 223 (240)
+.+.+.. +.++|+.++.. .+...++++.+++ |+++|....
T Consensus 104 ~~i~~~~---------~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~ 150 (201)
T cd00945 104 AAVVEAA---------DGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTST 150 (201)
T ss_pred HHHHHHh---------cCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCC
Confidence 7766650 13679888886 1234566667788 999998754
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.19 Score=43.85 Aligned_cols=106 Identities=19% Similarity=0.027 Sum_probs=65.8
Q ss_pred eeCChhhHHHhhhcccCCCCceeEEeecC---------------CHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccc
Q psy7344 96 LQDDWPLLTELGFKTRSHMCGHSLMFCGN---------------DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHY 159 (240)
Q Consensus 96 l~~d~eli~~i~~~~~~~~~pvivqi~g~---------------d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~ 159 (240)
+..+++++.++.....+...++.+.+..+ ......++++.+++ +++.|-+.-= .+.|+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i------~~~G~ 179 (258)
T PRK01033 106 ALEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSI------DRDGT 179 (258)
T ss_pred HhcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEcc------CCCCC
Confidence 34567888887655432223344443322 23345677777755 7776655311 11222
Q ss_pred cccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 160 GAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 160 G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.. ..|++.++++.+. .++||.+-.-+.+..++.+.++. |++++.+ |+-
T Consensus 180 ~~--G~d~~~i~~~~~~---------------~~ipvIasGGv~s~eD~~~l~~~~GvdgViv-g~a 228 (258)
T PRK01033 180 MK--GYDLELLKSFRNA---------------LKIPLIALGGAGSLDDIVEAILNLGADAAAA-GSL 228 (258)
T ss_pred cC--CCCHHHHHHHHhh---------------CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE-cce
Confidence 22 3599999888775 45677777778888889999978 9999987 543
|
|
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.21 Score=46.72 Aligned_cols=137 Identities=18% Similarity=0.110 Sum_probs=78.6
Q ss_pred cccCCCccccccCchhhhhhhhcccceeeeCChhhHHHhhhccc----------CCCCceeEEeecC-CHHHHHHHHHHH
Q psy7344 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTR----------SHMCGHSLMFCGN-DSKNLTEAAKLA 136 (240)
Q Consensus 68 ~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~----------~~~~pvivqi~g~-d~~~~~~aa~~l 136 (240)
.+.+++|++++|.-||..- | .+ .+. +.+.+.+++.+++ ....|++++|.-. +.+++.+.++.+
T Consensus 212 ~~~~~aDylelNiScPNtp---g-lr-~lq-~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a 285 (409)
T PLN02826 212 ALSQYADYLVINVSSPNTP---G-LR-KLQ-GRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVA 285 (409)
T ss_pred HHhhhCCEEEEECCCCCCC---C-cc-ccc-ChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHH
Confidence 3457899999999998831 1 11 121 2333333322221 1247999998532 445677888876
Q ss_pred cc-CCCEEE-ecC--CCchhh------hhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHH
Q psy7344 137 EP-HCDGID-INI--GCPQMV------AKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRG 206 (240)
Q Consensus 137 e~-~~d~Id-in~--gCP~~~------~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~ 206 (240)
++ |+|||= +|. +-|... ...+|.... .-.....+++..+.+.+ . .++||..=.-+.+..
T Consensus 286 ~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~--pl~~~sl~~v~~l~~~~--------~-~~ipIIgvGGI~sg~ 354 (409)
T PLN02826 286 LALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGK--PLFDLSTEVLREMYRLT--------R-GKIPLVGCGGVSSGE 354 (409)
T ss_pred HHcCCCEEEEEcccCcCccchhcccccccCCCcCCc--cccHHHHHHHHHHHHHh--------C-CCCcEEEECCCCCHH
Confidence 54 788864 452 222200 112222221 11123345666665541 0 157777777788888
Q ss_pred HHHHHHhCCCCeEEE
Q psy7344 207 HYGAYLQDDWPLLTE 221 (240)
Q Consensus 207 ~~~~~l~~G~~~iti 221 (240)
+..+.+..||+.+.+
T Consensus 355 Da~e~i~AGAs~VQv 369 (409)
T PLN02826 355 DAYKKIRAGASLVQL 369 (409)
T ss_pred HHHHHHHhCCCeeee
Confidence 999988889999988
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.33 Score=41.38 Aligned_cols=105 Identities=13% Similarity=0.018 Sum_probs=65.2
Q ss_pred eeeeCChhhHHHhhhcccCCCCceeEEeecC----------------CHHHHHHHHHHHcc-CCCEEEecCCCchhhhhc
Q psy7344 94 AYLQDDWPLLTELGFKTRSHMCGHSLMFCGN----------------DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKR 156 (240)
Q Consensus 94 a~l~~d~eli~~i~~~~~~~~~pvivqi~g~----------------d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~ 156 (240)
+.+..+|+++.++.........++.+.+..+ ...+..+.++.+++ |+|.|-+.- . .+
T Consensus 104 ~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~-----i-~~ 177 (232)
T TIGR03572 104 TAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNS-----I-DR 177 (232)
T ss_pred hhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeC-----C-Cc
Confidence 3344568888887655422212233332221 12345677787765 788887742 1 11
Q ss_pred ccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEE
Q psy7344 157 GHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 157 ~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~iti 221 (240)
.+... ..+++.++++.+. .++||.+-..+.+..++.+.+.+ |++++.+
T Consensus 178 ~g~~~--g~~~~~~~~i~~~---------------~~ipvia~GGi~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 178 DGTMK--GYDLELIKTVSDA---------------VSIPVIALGGAGSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred cCCcC--CCCHHHHHHHHhh---------------CCCCEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 12222 3588888887764 45688887778888888888888 9999988
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.29 Score=41.97 Aligned_cols=86 Identities=16% Similarity=0.110 Sum_probs=59.7
Q ss_pred eeEEeecCCHHHHHHHHHHHcc-CCCE--EEecCC--CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEP-HCDG--IDINIG--CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~-~~d~--Idin~g--CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
+.++|...|+..+.+.++.++. ++|. +|+==| .|+. .--++. ++++++..
T Consensus 9 i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~-----------~~G~~~----v~~lr~~~---------- 63 (228)
T PTZ00170 9 IAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNL-----------SFGPPV----VKSLRKHL---------- 63 (228)
T ss_pred EehhHhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCc-----------CcCHHH----HHHHHhcC----------
Confidence 4557777899888888888866 6654 444222 2332 123444 44444440
Q ss_pred CCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 192 NDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 192 ~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
.++|+.+|+.+++...+++.+.+ |+|.+|+|+-+..
T Consensus 64 ~~~~lDvHLm~~~p~~~i~~~~~~Gad~itvH~ea~~ 100 (228)
T PTZ00170 64 PNTFLDCHLMVSNPEKWVDDFAKAGASQFTFHIEATE 100 (228)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHcCCCEEEEeccCCc
Confidence 27799999998889999999999 9999999998643
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.43 Score=40.99 Aligned_cols=76 Identities=14% Similarity=0.082 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhc
Q psy7344 126 SKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAK 204 (240)
Q Consensus 126 ~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~ 204 (240)
..+..+.++.+++ ++|.|.+.- .. +.+.. -..+++.++++.+. .++||.+-..+.+
T Consensus 148 ~~~~~~~~~~l~~~G~d~i~v~~-----i~-~~g~~--~g~~~~~i~~i~~~---------------~~~pvia~GGi~~ 204 (243)
T cd04731 148 GLDAVEWAKEVEELGAGEILLTS-----MD-RDGTK--KGYDLELIRAVSSA---------------VNIPVIASGGAGK 204 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEec-----cC-CCCCC--CCCCHHHHHHHHhh---------------CCCCEEEeCCCCC
Confidence 4456667777654 889888742 11 11222 23588888888764 4668888888888
Q ss_pred HHHHHHHHhC-CCCeEEEeccc
Q psy7344 205 RGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 205 ~~~~~~~l~~-G~~~itih~R~ 225 (240)
..++.+.++. |+|++.+ ||-
T Consensus 205 ~~di~~~l~~~g~dgv~v-g~a 225 (243)
T cd04731 205 PEHFVEAFEEGGADAALA-ASI 225 (243)
T ss_pred HHHHHHHHHhCCCCEEEE-eHH
Confidence 8899999999 9999988 654
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.48 Score=42.88 Aligned_cols=87 Identities=11% Similarity=0.123 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehh
Q psy7344 124 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVA 203 (240)
Q Consensus 124 ~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~ 203 (240)
++..+...+..+++.|+|+|.++.|.-...+.+.-.|... .+|.. ..+..++++ .++||.+-.-+.
T Consensus 143 GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~-~~~~l--~ai~ev~~a-----------~~~pVIadGGIr 208 (321)
T TIGR01306 143 GNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGT-GGWQL--AALRWCAKA-----------ARKPIIADGGIR 208 (321)
T ss_pred ecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCC-CchHH--HHHHHHHHh-----------cCCeEEEECCcC
Confidence 3344444455555669999999877222211222122221 35553 233333444 467888877788
Q ss_pred cHHHHHHHHhCCCCeEEEeccc
Q psy7344 204 KRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 204 ~~~~~~~~l~~G~~~itih~R~ 225 (240)
.-.+.+++|..|||++.+ ||.
T Consensus 209 ~~~Di~KALa~GAd~Vmi-g~~ 229 (321)
T TIGR01306 209 THGDIAKSIRFGASMVMI-GSL 229 (321)
T ss_pred cHHHHHHHHHcCCCEEee-chh
Confidence 888999999889999988 664
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.52 Score=41.94 Aligned_cols=100 Identities=6% Similarity=-0.108 Sum_probs=61.0
Q ss_pred CCceeEEeec--CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCC
Q psy7344 114 MCGHSLMFCG--NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCD 190 (240)
Q Consensus 114 ~~pvivqi~g--~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~ 190 (240)
+.||++-+-+ +++....+.++.+++ |+.||.|-=....+...|. .|..+ ...+...+=+++++++.
T Consensus 73 ~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~-~g~~l-v~~ee~~~kI~Aa~~a~--------- 141 (285)
T TIGR02317 73 DLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHL-PGKEL-VSREEMVDKIAAAVDAK--------- 141 (285)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCC-CCccc-cCHHHHHHHHHHHHHhc---------
Confidence 5899998832 568888888888866 8999998655322211111 12333 34444433344444431
Q ss_pred CCCeeeEEeee--------hhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 191 GNDINIGCPQM--------VAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 191 ~~~~pvsvK~r--------~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.+.++.+--| ++++++-+++..+ |||.|-+|+=+
T Consensus 142 -~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g~~ 184 (285)
T TIGR02317 142 -RDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPEALT 184 (285)
T ss_pred -cCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 2234555455 3466777788889 99999999833
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.42 Score=43.32 Aligned_cols=101 Identities=13% Similarity=0.131 Sum_probs=61.1
Q ss_pred hhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhh-hhcccccccccCCHHH--HHHHHHHh
Q psy7344 101 PLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMV-AKRGHYGAYLQDDWPL--LTNLVYSP 177 (240)
Q Consensus 101 eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~-~~~~g~G~~l~~~p~~--i~~iv~~~ 177 (240)
++|++++... .+.|+++ ++..+..++..+.+.|+|+|.++.| |-.. +.+...|.. ..+|.. +.++.++
T Consensus 129 e~I~~ir~~~--p~~~vi~----g~V~t~e~a~~l~~aGad~i~vg~~-~G~~~~t~~~~g~~-~~~w~l~ai~~~~~~- 199 (326)
T PRK05458 129 NMIQHIKKHL--PETFVIA----GNVGTPEAVRELENAGADATKVGIG-PGKVCITKIKTGFG-TGGWQLAALRWCAKA- 199 (326)
T ss_pred HHHHHHHhhC--CCCeEEE----EecCCHHHHHHHHHcCcCEEEECCC-CCcccccccccCCC-CCccHHHHHHHHHHH-
Confidence 4555554432 1245554 2334455555556679999998877 3321 222222222 467765 5555543
Q ss_pred hhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 178 NMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 178 ~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
.++||.+-..+.+..+.+++|..||+++.+ ||.
T Consensus 200 --------------~~ipVIAdGGI~~~~Di~KaLa~GA~aV~v-G~~ 232 (326)
T PRK05458 200 --------------ARKPIIADGGIRTHGDIAKSIRFGATMVMI-GSL 232 (326)
T ss_pred --------------cCCCEEEeCCCCCHHHHHHHHHhCCCEEEe-chh
Confidence 356787777788888999999889999988 543
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.32 Score=46.39 Aligned_cols=89 Identities=10% Similarity=0.042 Sum_probs=64.9
Q ss_pred EeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEe
Q psy7344 120 MFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCP 199 (240)
Q Consensus 120 qi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK 199 (240)
.|.++|..+...+..+++.|+|+|-+++|--+..+.++-+|.. ..+...+.++.++.++ .++||.+-
T Consensus 270 ~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~-~p~~~av~~~~~~~~~------------~~~~via~ 336 (479)
T PRK07807 270 PIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVG-RPQFSAVLECAAAARE------------LGAHVWAD 336 (479)
T ss_pred eEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCc-hhHHHHHHHHHHHHHh------------cCCcEEec
Confidence 4455777777777777788999999999943455555544443 3677777777776554 35678777
Q ss_pred eehhcHHHHHHHHhCCCCeEEE
Q psy7344 200 QMVAKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 200 ~r~~~~~~~~~~l~~G~~~iti 221 (240)
..+....+.+++|..||+++.+
T Consensus 337 ggi~~~~~~~~al~~ga~~v~~ 358 (479)
T PRK07807 337 GGVRHPRDVALALAAGASNVMI 358 (479)
T ss_pred CCCCCHHHHHHHHHcCCCeeec
Confidence 7777778888888889998877
|
|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.63 Score=41.56 Aligned_cols=99 Identities=6% Similarity=-0.059 Sum_probs=61.1
Q ss_pred CCceeEEeec--CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccc-cccccCCHHHHHHHHHHhhhccccccCCCC
Q psy7344 114 MCGHSLMFCG--NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHY-GAYLQDDWPLLTNLVYSPNMVHFVIAEPHC 189 (240)
Q Consensus 114 ~~pvivqi~g--~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~-G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~ 189 (240)
+.||++-+-+ +++....+.++.+++ |+.||.|-=....+.. ++. |..+..--+.+.+|. +++++-
T Consensus 78 ~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~c--g~~~~~~lv~~ee~~~kI~-Aa~~a~-------- 146 (292)
T PRK11320 78 DLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRC--GHRPNKEIVSQEEMVDRIK-AAVDAR-------- 146 (292)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCcccc--CCCCCCcccCHHHHHHHHH-HHHHhc--------
Confidence 5799998843 488888888888876 8999988654321211 222 333333334444444 434431
Q ss_pred CCCCeeeEEeee--------hhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 190 DGNDINIGCPQM--------VAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 190 ~~~~~pvsvK~r--------~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.+.++.+--| +++.++-+++..+ |||.|-+|+=+
T Consensus 147 --~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~~~ 189 (292)
T PRK11320 147 --TDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPEAMT 189 (292)
T ss_pred --cCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 2334555555 3466777788889 99999999843
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.42 Score=41.86 Aligned_cols=81 Identities=6% Similarity=-0.110 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+. .|+++|-++-. +|....-.++.-.++++.+.+.. . .++||.+-+.
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~Gs----------tGE~~~ls~~Er~~l~~~~~~~~--------~-~~~~vi~gv~~~ 76 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLGT----------TGEAPTLTDEERKEVIEAVVEAV--------A-GRVPVIAGVGAN 76 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCC----------CcccccCCHHHHHHHHHHHHHHh--------C-CCCeEEEecCCc
Confidence 6777888888764 48999987544 45555556666677887776651 1 2678888877
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEecc
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih~R 224 (240)
..+++++++.+++ |+|++.+..-
T Consensus 77 ~~~~~i~~a~~a~~~Gad~v~v~pP 101 (281)
T cd00408 77 STREAIELARHAEEAGADGVLVVPP 101 (281)
T ss_pred cHHHHHHHHHHHHHcCCCEEEECCC
Confidence 4567899999999 9999999664
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.49 Score=43.60 Aligned_cols=104 Identities=7% Similarity=-0.068 Sum_probs=65.5
Q ss_pred CceeEEeec-CCHHHHHHHHHHHcc-CCCEEEecCCCchhhh---------------------hcccccc-------c--
Q psy7344 115 CGHSLMFCG-NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVA---------------------KRGHYGA-------Y-- 162 (240)
Q Consensus 115 ~pvivqi~g-~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~---------------------~~~g~G~-------~-- 162 (240)
.|...|+.- .|.+...+..++.+. |+.+|-+..=.|..-. ...+.+. .
T Consensus 133 ~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (367)
T TIGR02708 133 TPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAK 212 (367)
T ss_pred CceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccC
Confidence 478889864 677777888888876 7888777554442100 0000000 0
Q ss_pred ccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeE--EEecccccccCCCCCCCCCC
Q psy7344 163 LQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLL--TELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 163 l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~i--tih~R~~~~~~~~~~~adw~ 239 (240)
-.-+|+.++.+.+ . .++||++|.-. +.+.++.+.+ |+|+| +.||+ .|.+ .++++|+
T Consensus 213 ~~~~w~~i~~l~~----~-----------~~~PvivKGv~--~~eda~~a~~~Gvd~I~VS~HGG--rq~~--~~~a~~~ 271 (367)
T TIGR02708 213 QKLSPRDIEEIAG----Y-----------SGLPVYVKGPQ--CPEDADRALKAGASGIWVTNHGG--RQLD--GGPAAFD 271 (367)
T ss_pred CCCCHHHHHHHHH----h-----------cCCCEEEeCCC--CHHHHHHHHHcCcCEEEECCcCc--cCCC--CCCcHHH
Confidence 0245766655554 3 67899999643 3677888888 99976 77775 5653 5777775
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.55 Score=41.96 Aligned_cols=80 Identities=13% Similarity=0.027 Sum_probs=57.2
Q ss_pred CCceeEEeecCCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
..|+..++.+.+++++.+.++.+ +.|++.|.++.|. +++...+.++++++.+ +
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~g~----------------~~~~d~~~v~~lr~~~---------g- 176 (316)
T cd03319 123 PLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGG----------------DLEDDIERIRAIREAA---------P- 176 (316)
T ss_pred CceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCC----------------ChhhHHHHHHHHHHhC---------C-
Confidence 45777788778888877766654 6689999999872 3344556777777662 1
Q ss_pred CeeeEEeee----hhcHHHHHHHHhC-CCCeE
Q psy7344 193 DINIGCPQM----VAKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 193 ~~pvsvK~r----~~~~~~~~~~l~~-G~~~i 219 (240)
++++.++.+ .++..++++.+++ |+.+|
T Consensus 177 ~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~i 208 (316)
T cd03319 177 DARLRVDANQGWTPEEAVELLRELAELGVELI 208 (316)
T ss_pred CCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEE
Confidence 356666666 3467889999999 99888
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.58 Score=39.97 Aligned_cols=83 Identities=20% Similarity=0.199 Sum_probs=61.5
Q ss_pred ceeEEeecCCHHHHHHHHHHHcc-CCCEE--EecCC--CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCC
Q psy7344 116 GHSLMFCGNDSKNLTEAAKLAEP-HCDGI--DINIG--CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCD 190 (240)
Q Consensus 116 pvivqi~g~d~~~~~~aa~~le~-~~d~I--din~g--CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~ 190 (240)
.+..+|...|...+.+-++.+++ |+|.+ |+==| +|+- .--|+ ++++++..
T Consensus 5 ~iapSILsaD~~~l~~el~~~~~agad~iH~DVMDghFVPNi-----------TfGp~----~v~~l~~~---------- 59 (220)
T COG0036 5 KIAPSILSADFARLGEELKALEAAGADLIHIDVMDGHFVPNI-----------TFGPP----VVKALRKI---------- 59 (220)
T ss_pred eeeeehhhCCHhHHHHHHHHHHHcCCCEEEEeccCCCcCCCc-----------ccCHH----HHHHHhhc----------
Confidence 46678888899988888888875 77653 33222 2332 12244 55555555
Q ss_pred CCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEecc
Q psy7344 191 GNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 191 ~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R 224 (240)
++.|+.|-+.+++...+.+.+.+ |+|.||+|.=
T Consensus 60 -t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E 93 (220)
T COG0036 60 -TDLPLDVHLMVENPDRYIEAFAKAGADIITFHAE 93 (220)
T ss_pred -CCCceEEEEecCCHHHHHHHHHHhCCCEEEEEec
Confidence 78999999999999999999999 9999999975
|
|
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.77 Score=38.02 Aligned_cols=87 Identities=22% Similarity=0.208 Sum_probs=54.8
Q ss_pred eeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
+.++|..-|..++.+.++.+.+ |++.|.+... .+.+-....-.++.++++.+. .+.|
T Consensus 2 ~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~-------d~~~~~~~~~~~~~~~~i~~~---------------~~~~ 59 (211)
T cd00429 2 IAPSILSADFANLGEELKRLEEAGADWIHIDVM-------DGHFVPNLTFGPPVVKALRKH---------------TDLP 59 (211)
T ss_pred ceeeeecCCHHHHHHHHHHHHHcCCCEEEEecc-------cCCCCCccccCHHHHHHHHhh---------------CCCc
Confidence 4456677899988888888765 7899888421 000000011234555555543 2235
Q ss_pred eEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 196 IGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 196 vsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+.+.+.+.+..++++.+.+ |+|++++|+..
T Consensus 60 ~~v~l~~~d~~~~~~~~~~~g~dgv~vh~~~ 90 (211)
T cd00429 60 LDVHLMVENPERYIEAFAKAGADIITFHAEA 90 (211)
T ss_pred EEEEeeeCCHHHHHHHHHHcCCCEEEECccc
Confidence 5555555676778888889 99999999974
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.79 Score=40.97 Aligned_cols=97 Identities=8% Similarity=-0.073 Sum_probs=57.5
Q ss_pred CCceeEEeec--CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccc-cccccCCHHHHHHHHHHhhhccccccCCCC
Q psy7344 114 MCGHSLMFCG--NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHY-GAYLQDDWPLLTNLVYSPNMVHFVIAEPHC 189 (240)
Q Consensus 114 ~~pvivqi~g--~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~-G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~ 189 (240)
+.||++-+-+ +++....+.++.+++ |+.||.|-=....+. .++. |..+..-.+.+++|..+ +++-
T Consensus 77 ~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~--cg~~~~k~lv~~ee~~~kI~Aa-~~A~-------- 145 (294)
T TIGR02319 77 DVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKR--CGHLEGKRLISTEEMTGKIEAA-VEAR-------- 145 (294)
T ss_pred CCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccc--cCCCCCccccCHHHHHHHHHHH-HHhc--------
Confidence 5799998832 355556777787765 899999865421111 1222 22343334444444444 3331
Q ss_pred CCCCeeeEEeee--------hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 190 DGNDINIGCPQM--------VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 190 ~~~~~pvsvK~r--------~~~~~~~~~~l~~-G~~~itih~ 223 (240)
.+.++.+--| ++.+++-+++..+ |||.|-+|+
T Consensus 146 --~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~ 186 (294)
T TIGR02319 146 --EDEDFTIIARTDARESFGLDEAIRRSREYVAAGADCIFLEA 186 (294)
T ss_pred --cCCCeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEEecC
Confidence 1223444444 3567777888889 999999997
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >KOG1606|consensus | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.15 Score=43.29 Aligned_cols=84 Identities=15% Similarity=0.170 Sum_probs=56.1
Q ss_pred HHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHH
Q psy7344 131 EAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYG 209 (240)
Q Consensus 131 ~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~ 209 (240)
+-++..|+ |+=+||.--.-|...-..+ |-+-|.||..|++|.++ +.+||.+|.|+..+++ +
T Consensus 32 eQA~iAE~aGACaVmalervPadiR~~G--gV~RMsDP~mIKei~~a---------------VsiPVMAk~RiGHFVE-A 93 (296)
T KOG1606|consen 32 EQARIAEEAGACAVMALERVPADIRAQG--GVARMSDPRMIKEIKNA---------------VSIPVMAKVRIGHFVE-A 93 (296)
T ss_pred HHHHHHHhcCcceEeeeccCCHhHHhcC--CeeecCCHHHHHHHHHh---------------ccchhhhhhhhhhhhH-H
Confidence 34556655 5445554444476543333 44558999999998876 6889999999876554 6
Q ss_pred HHHhC-CCCeEEEecccccccCCCCCCCCCCC
Q psy7344 210 AYLQD-DWPLLTELGKMAMLVGILDNTGSWTP 240 (240)
Q Consensus 210 ~~l~~-G~~~itih~R~~~~~~~~~~~adw~~ 240 (240)
+.||. |+|+|-- .+- -.+|||+.
T Consensus 94 QIlE~l~vDYiDE-----SEv---lt~AD~~h 117 (296)
T KOG1606|consen 94 QILEALGVDYIDE-----SEV---LTPADWDH 117 (296)
T ss_pred HHHHHhccCccch-----hhh---cccccccc
Confidence 88999 9999853 221 25788863
|
|
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.66 Score=42.67 Aligned_cols=94 Identities=14% Similarity=0.020 Sum_probs=62.4
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccc---cCCHHHHHHHHH
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL---QDDWPLLTNLVY 175 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l---~~~p~~i~~iv~ 175 (240)
.|+.|+.+.... ..|++++ ++.+..++.+.++.|+|+|.+..+ +| .++ ....+.+.++.+
T Consensus 224 ~w~~i~~ir~~~---~~pviiK----gV~~~eda~~a~~~G~d~I~VSnh--------GG--rqld~~~~~~~~L~ei~~ 286 (361)
T cd04736 224 NWQDLRWLRDLW---PHKLLVK----GIVTAEDAKRCIELGADGVILSNH--------GG--RQLDDAIAPIEALAEIVA 286 (361)
T ss_pred CHHHHHHHHHhC---CCCEEEe----cCCCHHHHHHHHHCCcCEEEECCC--------Cc--CCCcCCccHHHHHHHHHH
Confidence 477777776543 2577776 245555677777889999998432 22 223 123444444443
Q ss_pred HhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 176 SPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 176 ~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
. .++||.+-..+..-.+.+++|..||+++.+ ||-
T Consensus 287 ----~-----------~~~~vi~dGGIr~g~Dv~KALaLGA~aV~i-Gr~ 320 (361)
T cd04736 287 ----A-----------TYKPVLIDSGIRRGSDIVKALALGANAVLL-GRA 320 (361)
T ss_pred ----H-----------hCCeEEEeCCCCCHHHHHHHHHcCCCEEEE-CHH
Confidence 3 346888877788888999999999999988 664
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.66 Score=42.49 Aligned_cols=93 Identities=6% Similarity=-0.101 Sum_probs=58.2
Q ss_pred CceeEEeec-CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhh----ccc------------------ccc-------cc
Q psy7344 115 CGHSLMFCG-NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAK----RGH------------------YGA-------YL 163 (240)
Q Consensus 115 ~pvivqi~g-~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~----~~g------------------~G~-------~l 163 (240)
.|...|+.. .|.+...+..++.+. |+.+|-+..-.|..--. +.+ .+. .+
T Consensus 125 ~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (351)
T cd04737 125 GPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAA 204 (351)
T ss_pred CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhc
Confidence 468889864 577777888888866 78888777655331100 000 000 00
Q ss_pred --cCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEE--ecc
Q psy7344 164 --QDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTE--LGK 224 (240)
Q Consensus 164 --~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~iti--h~R 224 (240)
.-+|+.+ +++++. .++||.+|.- .+.+.++.+.+ |+|+|++ ||.
T Consensus 205 ~~~~~~~~l----~~lr~~-----------~~~PvivKgv--~~~~dA~~a~~~G~d~I~vsnhGG 253 (351)
T cd04737 205 KQKLSPADI----EFIAKI-----------SGLPVIVKGI--QSPEDADVAINAGADGIWVSNHGG 253 (351)
T ss_pred cCCCCHHHH----HHHHHH-----------hCCcEEEecC--CCHHHHHHHHHcCCCEEEEeCCCC
Confidence 0145544 444444 6789999963 34477788888 9999999 774
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.74 Score=39.15 Aligned_cols=85 Identities=9% Similarity=0.006 Sum_probs=59.4
Q ss_pred eeEEeecCCHHHHHHHHHHHcc-CCCE--EEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCC
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEP-HCDG--IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGND 193 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~-~~d~--Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~ 193 (240)
+..+|...|...+.+-++.+++ ++|. +|+==| ++--.+.--|+.+ +++++. ++
T Consensus 3 i~pSil~ad~~~l~~el~~l~~~g~d~lHiDvMDG---------~FVPN~tfG~~~i----~~l~~~-----------t~ 58 (210)
T PRK08005 3 LHPSLASADPLRYAEALTALHDAPLGSLHLDIEDT---------SFINNITFGMKTI----QAVAQQ-----------TR 58 (210)
T ss_pred EEeehhhCCHHHHHHHHHHHHHCCCCEEEEeccCC---------CcCCccccCHHHH----HHHHhc-----------CC
Confidence 3457777898888888888866 6664 444222 2222222245544 444444 67
Q ss_pred eeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 194 INIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 194 ~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+|+.+-+.+.+...+.+.+.+ |++.||+|.-+
T Consensus 59 ~~~DvHLMv~~P~~~i~~~~~~gad~It~H~Ea 91 (210)
T PRK08005 59 HPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAES 91 (210)
T ss_pred CCeEEEeccCCHHHHHHHHHHhCCCEEEEcccC
Confidence 899999999999999999999 99999999874
|
|
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.51 Score=40.86 Aligned_cols=97 Identities=14% Similarity=0.073 Sum_probs=57.2
Q ss_pred CCceeEEee---cCCHHHHHHHHHHHcc-CCCEEEecCC-CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCC
Q psy7344 114 MCGHSLMFC---GNDSKNLTEAAKLAEP-HCDGIDINIG-CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPH 188 (240)
Q Consensus 114 ~~pvivqi~---g~d~~~~~~aa~~le~-~~d~Idin~g-CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~ 188 (240)
+.|+++-+- |+++....+.++.+++ |+.||.|.=. |- + .+..+. .++...+=+++++++.
T Consensus 69 ~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~-----~--~~~~l~-~~ee~~~kI~Aa~~a~------- 133 (238)
T PF13714_consen 69 SIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQRCG-----H--GGKQLV-SPEEMVAKIRAAVDAR------- 133 (238)
T ss_dssp SSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTT-----T--STT-B---HHHHHHHHHHHHHHH-------
T ss_pred cCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeeccccC-----C--CCCcee-CHHHHHHHHHHHHHhc-------
Confidence 589999883 3449999999998876 8999999766 43 1 233455 4444433334444431
Q ss_pred CCCCCeeeEEeee--------hhcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 189 CDGNDINIGCPQM--------VAKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 189 ~~~~~~pvsvK~r--------~~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
...++-|.+.+. ++++++-++++.+ |||.|.+|+-+.
T Consensus 134 -~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~~~~~ 179 (238)
T PF13714_consen 134 -RDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEAGADMIFIPGLQS 179 (238)
T ss_dssp -SSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEETTSSS
T ss_pred -cCCeEEEEEeccccccCCCCHHHHHHHHHHHHHcCCCEEEeCCCCC
Confidence 012333444433 2455667777888 999999999653
|
... |
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=92.84 E-value=1 Score=40.14 Aligned_cols=101 Identities=6% Similarity=-0.116 Sum_probs=58.6
Q ss_pred CCceeEEeec--CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCC
Q psy7344 114 MCGHSLMFCG--NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCD 190 (240)
Q Consensus 114 ~~pvivqi~g--~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~ 190 (240)
+.||++-+-+ +++....+.++.+++ |+.||.|.=..-.+...+...|..-+.+++...+=+++++++-
T Consensus 75 ~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~--------- 145 (290)
T TIGR02321 75 SIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAAR--------- 145 (290)
T ss_pred CCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhC---------
Confidence 5899998842 344467777777765 8999998655311111111012112345555444444444431
Q ss_pred CCCeeeEEeee---------hhcHHHHHHHHhC-CCCeEEEecc
Q psy7344 191 GNDINIGCPQM---------VAKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 191 ~~~~pvsvK~r---------~~~~~~~~~~l~~-G~~~itih~R 224 (240)
.+.++.+.-| ++++++-+++..+ |||.|-+|+.
T Consensus 146 -~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~ 188 (290)
T TIGR02321 146 -ADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSR 188 (290)
T ss_pred -CCCCEEEEEEeccccccCCHHHHHHHHHHHHHcCCCEEEecCC
Confidence 2234555445 2456777788889 9999999973
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.74 Score=41.29 Aligned_cols=80 Identities=11% Similarity=-0.047 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-+|-+ +|....-..+.-.++++.+.+.+ . -++||.+-.-
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v~Gs----------tGE~~~Lt~eEr~~v~~~~~~~~--------~-grvpvi~Gv~~~ 87 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILTMGT----------FGECATLTWEEKQAFVATVVETV--------A-GRVPVFVGATTL 87 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc----------cccchhCCHHHHHHHHHHHHHHh--------C-CCCCEEEEeccC
Confidence 667777777766 558999988554 45555556666667877766641 1 3678887776
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih~ 223 (240)
..+++++++..++ |+|++.+..
T Consensus 88 ~t~~ai~~a~~A~~~Gad~vlv~~ 111 (309)
T cd00952 88 NTRDTIARTRALLDLGADGTMLGR 111 (309)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECC
Confidence 5678899999999 999998853
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.9 Score=39.15 Aligned_cols=85 Identities=20% Similarity=0.124 Sum_probs=60.1
Q ss_pred eeEEeecCCHHHHHHHHHHHccCCCE--EEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCe
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEPHCDG--IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDI 194 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~~~d~--Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~ 194 (240)
+.++|...|...+.+-++.++.++|. +|+==| .+--.+.=-|+ +++++++. +++
T Consensus 5 I~pSil~ad~~~l~~el~~l~~g~d~lH~DiMDG---------~FVPN~tfg~~----~i~~ir~~-----------t~~ 60 (229)
T PRK09722 5 ISPSLMCMDLLKFKEQIEFLNSKADYFHIDIMDG---------HFVPNLTLSPF----FVSQVKKL-----------ASK 60 (229)
T ss_pred EEeehhhcCHHHHHHHHHHHHhCCCEEEEecccC---------ccCCCcccCHH----HHHHHHhc-----------CCC
Confidence 56678888988888888888777664 444222 11111222344 44445544 678
Q ss_pred eeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 195 NIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 195 pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
|+.+-+.+.+...+.+.+.+ |+|.||+|.-.
T Consensus 61 ~~DvHLMv~~P~~~i~~~~~aGad~it~H~Ea 92 (229)
T PRK09722 61 PLDVHLMVTDPQDYIDQLADAGADFITLHPET 92 (229)
T ss_pred CeEEEEEecCHHHHHHHHHHcCCCEEEECccC
Confidence 99999999999999999999 99999999874
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.60 E-value=1.1 Score=40.44 Aligned_cols=84 Identities=13% Similarity=0.126 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHccCCCEEEecCCCchh-hhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh
Q psy7344 124 NDSKNLTEAAKLAEPHCDGIDINIGCPQM-VAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV 202 (240)
Q Consensus 124 ~d~~~~~~aa~~le~~~d~Idin~gCP~~-~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~ 202 (240)
++..+...+.+.++.|+|+|.++.| |-. ...+.-.|. ...++..+.++.+.+.. .++||.+-..+
T Consensus 141 G~v~t~~~A~~l~~aGaD~I~vg~g-~G~~~~t~~~~g~-g~p~~~~i~~v~~~~~~------------~~vpVIA~GGI 206 (325)
T cd00381 141 GNVVTAEAARDLIDAGADGVKVGIG-PGSICTTRIVTGV-GVPQATAVADVAAAARD------------YGVPVIADGGI 206 (325)
T ss_pred CCCCCHHHHHHHHhcCCCEEEECCC-CCcCcccceeCCC-CCCHHHHHHHHHHHHhh------------cCCcEEecCCC
Confidence 5555555566666779999999655 211 011110111 13567777777776543 35677766667
Q ss_pred hcHHHHHHHHhCCCCeEEE
Q psy7344 203 AKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 203 ~~~~~~~~~l~~G~~~iti 221 (240)
.+..++++++..|++++.+
T Consensus 207 ~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 207 RTSGDIVKALAAGADAVML 225 (325)
T ss_pred CCHHHHHHHHHcCCCEEEe
Confidence 7778899999779999998
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.73 Score=43.92 Aligned_cols=90 Identities=10% Similarity=-0.000 Sum_probs=58.6
Q ss_pred CceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCe
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDI 194 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~ 194 (240)
.|+++ ++..+...+..+++.|+|+|.++.|-=...+.+.-+|.. ......+.++.+++++ .++
T Consensus 267 ~~vi~----g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g-~~~~~a~~~~~~~~~~------------~~~ 329 (475)
T TIGR01303 267 VPIVA----GNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVG-RPQFSAVLECAAEARK------------LGG 329 (475)
T ss_pred CeEEE----eccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCC-CchHHHHHHHHHHHHH------------cCC
Confidence 45554 444455555566667999999999822222333322221 2345555556555544 356
Q ss_pred eeEEeeehhcHHHHHHHHhCCCCeEEE
Q psy7344 195 NIGCPQMVAKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 195 pvsvK~r~~~~~~~~~~l~~G~~~iti 221 (240)
||.+-.++....+++++|..||+++++
T Consensus 330 ~viadGgi~~~~di~kala~GA~~vm~ 356 (475)
T TIGR01303 330 HVWADGGVRHPRDVALALAAGASNVMV 356 (475)
T ss_pred cEEEeCCCCCHHHHHHHHHcCCCEEee
Confidence 888888888889999999889999988
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.50 E-value=1.2 Score=39.51 Aligned_cols=103 Identities=9% Similarity=-0.058 Sum_probs=64.1
Q ss_pred CCCceeEEeec--CCHHHHHHHHHHHcc-CCCEEEecCCC-chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCC
Q psy7344 113 HMCGHSLMFCG--NDSKNLTEAAKLAEP-HCDGIDINIGC-PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPH 188 (240)
Q Consensus 113 ~~~pvivqi~g--~d~~~~~~aa~~le~-~~d~Idin~gC-P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~ 188 (240)
.+.||++-+-+ +++....+.++.+++ |+.||.|-=-- |-+ ..+.-|..+..-.+.+.+|..++...
T Consensus 77 ~~lPv~vD~dtGfG~~~nvartV~~~~~aG~agi~iEDq~~pk~--cgh~~gk~l~~~~e~v~rIkAa~~a~-------- 146 (289)
T COG2513 77 VDLPVLVDIDTGFGEALNVARTVRELEQAGAAGIHIEDQVGPKR--CGHLPGKELVSIDEMVDRIKAAVEAR-------- 146 (289)
T ss_pred cCCceEEeccCCCCcHHHHHHHHHHHHHcCcceeeeeecccchh--cCCCCCCCcCCHHHHHHHHHHHHHhc--------
Confidence 36899998843 468888888888766 77777654210 111 11113444544444555554444433
Q ss_pred CCCCCeeeEEeee--------hhcHHHHHHHHhC-CCCeEEEecccccc
Q psy7344 189 CDGNDINIGCPQM--------VAKRGHYGAYLQD-DWPLLTELGKMAML 228 (240)
Q Consensus 189 ~~~~~~pvsvK~r--------~~~~~~~~~~l~~-G~~~itih~R~~~~ 228 (240)
.+.++.+--| ++++++-+++..+ |+|.|-.++.+...
T Consensus 147 ---~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~~al~~~e 192 (289)
T COG2513 147 ---RDPDFVIIARTDALLVEGLDDAIERAQAYVEAGADAIFPEALTDLE 192 (289)
T ss_pred ---cCCCeEEEeehHHHHhccHHHHHHHHHHHHHcCCcEEccccCCCHH
Confidence 3445555555 4678888889999 99999999988654
|
|
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=92.29 E-value=1.1 Score=40.97 Aligned_cols=97 Identities=15% Similarity=0.059 Sum_probs=60.9
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEe-cCCCchhhhhcccccccccCCHHHHHHHHHHh
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDI-NIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSP 177 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idi-n~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~ 177 (240)
+|+.+..+.... ..|++++-. .++ .++.+..+.|+|+|.+ |.|--+ -.++ ...++.+.++.+++
T Consensus 209 ~~~~l~~lr~~~---~~PvivKgv-~~~---~dA~~a~~~G~d~I~vsnhGGr~------ld~~--~~~~~~l~~i~~a~ 273 (351)
T cd04737 209 SPADIEFIAKIS---GLPVIVKGI-QSP---EDADVAINAGADGIWVSNHGGRQ------LDGG--PASFDSLPEIAEAV 273 (351)
T ss_pred CHHHHHHHHHHh---CCcEEEecC-CCH---HHHHHHHHcCCCEEEEeCCCCcc------CCCC--chHHHHHHHHHHHh
Confidence 578887776543 369999821 233 3444445669999988 333100 0111 22345555555443
Q ss_pred hhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEecc
Q psy7344 178 NMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224 (240)
Q Consensus 178 ~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R 224 (240)
. .++||.+-.-+.+-.++++.+..||+++.+ ||
T Consensus 274 ~-------------~~i~vi~dGGIr~g~Di~kaLalGA~~V~i-Gr 306 (351)
T cd04737 274 N-------------HRVPIIFDSGVRRGEHVFKALASGADAVAV-GR 306 (351)
T ss_pred C-------------CCCeEEEECCCCCHHHHHHHHHcCCCEEEE-CH
Confidence 2 246787777788888999999889999988 77
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=92.14 E-value=1 Score=39.87 Aligned_cols=156 Identities=12% Similarity=-0.020 Sum_probs=82.7
Q ss_pred ccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCcccc-ccCchhhhhhhhcccceeeeCChhhHHHhhhc
Q psy7344 31 RGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGID-INIGCPQMVAKRGHYGAYLQDDWPLLTELGFK 109 (240)
Q Consensus 31 k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~d-l~~gC~~~i~~~g~~ga~l~~d~eli~~i~~~ 109 (240)
++..|-+-+++|+.+.+ +. +..+.|+.-..+.-- |.+.-. ...| +..+.-+.+.+- ..+++..++..
T Consensus 43 ~~~~~v~R~~~~~~I~~----Ik-~~V~iPVIGi~K~~~--~~Ea~~L~eaG-vDiIDaT~r~rP----~~~~~~~iK~~ 110 (283)
T cd04727 43 RAAGGVARMADPKMIKE----IM-DAVSIPVMAKVRIGH--FVEAQILEALG-VDMIDESEVLTP----ADEEHHIDKHK 110 (283)
T ss_pred hhcCCeeecCCHHHHHH----HH-HhCCCCeEEeeehhH--HHHHHHHHHcC-CCEEeccCCCCc----HHHHHHHHHHH
Confidence 56678899999999554 45 356899874322110 000000 1222 111110000000 13455555443
Q ss_pred ccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCC--Cch-hhhh------------cccc--------cccccCC
Q psy7344 110 TRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIG--CPQ-MVAK------------RGHY--------GAYLQDD 166 (240)
Q Consensus 110 ~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~g--CP~-~~~~------------~~g~--------G~~l~~~ 166 (240)
. +.|+. .|..++.++.+..+.|+|.|-.-.. =+. ..+. -.|| ......+
T Consensus 111 ~---~~l~M-----AD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d 182 (283)
T cd04727 111 F---KVPFV-----CGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAP 182 (283)
T ss_pred c---CCcEE-----ccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCC
Confidence 2 34544 6778888898999899888865431 111 0000 0001 0012468
Q ss_pred HHHHHHHHHHhhhccccccCCCCCCCCeeeE--EeeehhcHHHHHHHHhCCCCeEEE
Q psy7344 167 WPLLTNLVYSPNMVHFVIAEPHCDGNDINIG--CPQMVAKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 167 p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvs--vK~r~~~~~~~~~~l~~G~~~iti 221 (240)
++.++++++. .++||. +-..+.+..+..+.++.|++++.+
T Consensus 183 ~elLk~l~~~---------------~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaV 224 (283)
T cd04727 183 YELVKETAKL---------------GRLPVVNFAAGGVATPADAALMMQLGADGVFV 224 (283)
T ss_pred HHHHHHHHHh---------------cCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 8888888774 356775 555566666666666559999988
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.89 Score=41.52 Aligned_cols=101 Identities=11% Similarity=-0.037 Sum_probs=63.6
Q ss_pred CceeEEee-cCCHHHHHHHHHHHcc-CCCEEEecCCCchhhh----hcccc-------------------ccc-c--cCC
Q psy7344 115 CGHSLMFC-GNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVA----KRGHY-------------------GAY-L--QDD 166 (240)
Q Consensus 115 ~pvivqi~-g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~----~~~g~-------------------G~~-l--~~~ 166 (240)
.|...|+. ..|...+.++.++.+. |+++|-+..-.|..-. .+.++ +.. + ..+
T Consensus 118 ~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (344)
T cd02922 118 QPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFID 197 (344)
T ss_pred CcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccC
Confidence 57889985 4688888888888876 8999988887773211 00000 000 0 011
Q ss_pred HHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEecccccc
Q psy7344 167 WPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAML 228 (240)
Q Consensus 167 p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~~~ 228 (240)
+....+.++++++. .++||.+|.- .+.+-++.+.+ |+|+|.+-+.-..|
T Consensus 198 ~~~~~~~i~~l~~~-----------~~~PvivKgv--~~~~dA~~a~~~G~d~I~vsnhgG~~ 247 (344)
T cd02922 198 PTLTWDDIKWLRKH-----------TKLPIVLKGV--QTVEDAVLAAEYGVDGIVLSNHGGRQ 247 (344)
T ss_pred CCCCHHHHHHHHHh-----------cCCcEEEEcC--CCHHHHHHHHHcCCCEEEEECCCccc
Confidence 12222334444444 6789999955 34677788888 99999997765544
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >KOG1436|consensus | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.85 Score=41.10 Aligned_cols=102 Identities=9% Similarity=-0.017 Sum_probs=64.0
Q ss_pred ceeEEeecC--CHHHHHHHHHHHc---cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCC
Q psy7344 116 GHSLMFCGN--DSKNLTEAAKLAE---PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCD 190 (240)
Q Consensus 116 pvivqi~g~--d~~~~~~aa~~le---~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~ 190 (240)
++-|+++-+ +.+..++.++-+. +.+|...||.+||+.. |. ..++....+++++..+..+..-+..+
T Consensus 180 ~lGVnlgknk~s~d~~~dy~~gV~~~g~~adylviNvSsPNtp----Gl--r~lq~k~~L~~ll~~v~~a~~~~~~~--- 250 (398)
T KOG1436|consen 180 KLGVNLGKNKTSEDAILDYVEGVRVFGPFADYLVINVSSPNTP----GL--RSLQKKSDLRKLLTKVVQARDKLPLG--- 250 (398)
T ss_pred cceeeeccccCCcchHHHHHHHhhhcccccceEEEeccCCCCc----ch--hhhhhHHHHHHHHHHHHHHHhccccC---
Confidence 466777543 3444455555543 4589999999999962 22 22455555555555544432122222
Q ss_pred CCCeeeEEeeeh----hcHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 191 GNDINIGCPQMV----AKRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 191 ~~~~pvsvK~r~----~~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
.+.|+.+|+-. .+..|++..+.+ .+|++.+-+-|-.
T Consensus 251 -~~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVs 291 (398)
T KOG1436|consen 251 -KKPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVS 291 (398)
T ss_pred -CCCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceee
Confidence 45699999993 356788888888 9999888766643
|
|
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=91.73 E-value=0.47 Score=40.00 Aligned_cols=85 Identities=21% Similarity=0.175 Sum_probs=58.6
Q ss_pred eeEEeecCCHHHHHHHHHHHcc-CCCE--EEecCC--CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEP-HCDG--IDINIG--CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~-~~d~--Idin~g--CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
+..+|...|...+.+.++.+++ |+|. +|+-=| +|+. .-.|+.++ ++++.
T Consensus 2 I~pSil~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~-----------~~g~~~i~----~i~~~----------- 55 (201)
T PF00834_consen 2 ISPSILSADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNL-----------TFGPDIIK----AIRKI----------- 55 (201)
T ss_dssp EEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB------------B-HHHHH----HHHTT-----------
T ss_pred eehhhhhCCHHHHHHHHHHHHHcCCCEEEEeecccccCCcc-----------cCCHHHHH----HHhhc-----------
Confidence 4557777888999999898875 6663 454333 2332 22455544 44444
Q ss_pred CCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 192 NDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 192 ~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
+++|+.+-+.+.+...+.+.+.+ |++.|++|..+..
T Consensus 56 ~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H~E~~~ 92 (201)
T PF00834_consen 56 TDLPLDVHLMVENPERYIEEFAEAGADYITFHAEATE 92 (201)
T ss_dssp SSSEEEEEEESSSGGGHHHHHHHHT-SEEEEEGGGTT
T ss_pred CCCcEEEEeeeccHHHHHHHHHhcCCCEEEEcccchh
Confidence 78899999999888999999999 9999999998544
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=91.71 E-value=1.2 Score=37.85 Aligned_cols=111 Identities=14% Similarity=-0.083 Sum_probs=65.7
Q ss_pred ceeeeCChhhHHHhhhcccCCCCceeEEee-------cC---CHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccc
Q psy7344 93 GAYLQDDWPLLTELGFKTRSHMCGHSLMFC-------GN---DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGA 161 (240)
Q Consensus 93 ga~l~~d~eli~~i~~~~~~~~~pvivqi~-------g~---d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~ 161 (240)
|+.+..+++++.++...... ...+.+.+. +. ...+..++++.+++ +++.|=+.-- .+.++.
T Consensus 103 g~~~l~~~~~l~ei~~~~~~-~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~------~~~g~~- 174 (233)
T PRK00748 103 GTAAVKNPELVKEACKKFPG-KIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDI------SRDGTL- 174 (233)
T ss_pred CchHHhCHHHHHHHHHHhCC-CceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeee------cCcCCc-
Confidence 34444567777776654421 122222221 11 13345677787766 6776544311 112222
Q ss_pred cccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEecccccc
Q psy7344 162 YLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAML 228 (240)
Q Consensus 162 ~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~~~ 228 (240)
...|++.++++.+. .++|+.+-..+.+..++.+.++. |++++.+ ||--.+
T Consensus 175 -~G~d~~~i~~l~~~---------------~~ipvia~GGi~~~~di~~~~~~g~~~gv~v-g~a~~~ 225 (233)
T PRK00748 175 -SGPNVEATRELAAA---------------VPIPVIASGGVSSLDDIKALKGLGAVEGVIV-GRALYE 225 (233)
T ss_pred -CCCCHHHHHHHHHh---------------CCCCEEEeCCCCCHHHHHHHHHcCCccEEEE-EHHHHc
Confidence 23699999888875 34677777777788888888888 6999988 776443
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.59 E-value=1.4 Score=42.26 Aligned_cols=105 Identities=10% Similarity=0.088 Sum_probs=62.7
Q ss_pred hhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcc--cccccccCCHHHHHHHHHHh
Q psy7344 100 WPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRG--HYGAYLQDDWPLLTNLVYSP 177 (240)
Q Consensus 100 ~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~--g~G~~l~~~p~~i~~iv~~~ 177 (240)
|+++++++.... +.+++ .+|+.+..++...++.|+|+|-++.|--...+.+. +.|...+.....+.++.+
T Consensus 277 ~~~i~~ik~~~p--~~~vi----~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~-- 348 (505)
T PLN02274 277 LEMIKYIKKTYP--ELDVI----GGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAA-- 348 (505)
T ss_pred HHHHHHHHHhCC--CCcEE----EecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHH--
Confidence 466666654321 12333 25666666777777789999988755222222222 122222233333444433
Q ss_pred hhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 178 NMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 178 ~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
. .++||.+-..+.+..+++++|..||+++.+-.+.
T Consensus 349 --~-----------~~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~ 383 (505)
T PLN02274 349 --Q-----------HGVPVIADGGISNSGHIVKALTLGASTVMMGSFL 383 (505)
T ss_pred --h-----------cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhh
Confidence 2 4678888888888889999998899999885443
|
|
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.96 Score=37.92 Aligned_cols=87 Identities=18% Similarity=0.198 Sum_probs=53.3
Q ss_pred eeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
+.++|...|+..+.+.++.+.+ |++.|.+..- .+-+-.......+.++++. +. .+.+
T Consensus 6 ~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~-------d~~~~~~~~~~~~~~~~i~----~~-----------~~~~ 63 (220)
T PRK05581 6 IAPSILSADFARLGEEVKAVEAAGADWIHVDVM-------DGHFVPNLTIGPPVVEAIR----KV-----------TKLP 63 (220)
T ss_pred EEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCc-------cCCcCCCcCcCHHHHHHHH----hc-----------CCCc
Confidence 4556767788888888888765 7899888421 1100000001244444444 33 2234
Q ss_pred eEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 196 IGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 196 vsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+.+-+.+.+..++.+.+.+ |+|.+++|+..
T Consensus 64 ~~v~l~v~d~~~~i~~~~~~g~d~v~vh~~~ 94 (220)
T PRK05581 64 LDVHLMVENPDRYVPDFAKAGADIITFHVEA 94 (220)
T ss_pred EEEEeeeCCHHHHHHHHHHcCCCEEEEeecc
Confidence 5555555677777777778 99999999974
|
|
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.63 Score=43.22 Aligned_cols=88 Identities=18% Similarity=0.171 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHcc-CCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 126 SKNLTEAAKLAEP-HCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 126 ~~~~~~aa~~le~-~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++++.++|++..+ |+|||+|..+- |..-...-.||..+-..--.+.+|++++++++ +.+ .
T Consensus 164 i~~f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~v---------g~d-~ 233 (391)
T PLN02411 164 VEHYRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAI---------GAD-R 233 (391)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHc---------CCC-e
Confidence 3456777777754 89999998662 21111123466666444556689999999883 123 4
Q ss_pred eEEeeeh-------------hcHHHHHHHHhC-------CCCeEEEec
Q psy7344 196 IGCPQMV-------------AKRGHYGAYLQD-------DWPLLTELG 223 (240)
Q Consensus 196 vsvK~r~-------------~~~~~~~~~l~~-------G~~~itih~ 223 (240)
|.+|+.- +...++++.|+. |+|+|.+-.
T Consensus 234 vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~ 281 (391)
T PLN02411 234 VGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQ 281 (391)
T ss_pred EEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecC
Confidence 7777762 113445565542 389988853
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=91.40 E-value=1.5 Score=37.09 Aligned_cols=105 Identities=17% Similarity=0.045 Sum_probs=63.0
Q ss_pred eeCChhhHHHhhhcccCCCCceeEEee---------c---CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhccccccc
Q psy7344 96 LQDDWPLLTELGFKTRSHMCGHSLMFC---------G---NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAY 162 (240)
Q Consensus 96 l~~d~eli~~i~~~~~~~~~pvivqi~---------g---~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~ 162 (240)
+..+++++.++......+ ++++.+- + ....+..+.++.+++ +++++=+. +. .+.|..
T Consensus 105 ~l~dp~~~~~i~~~~g~~--~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~-~~-----~~~g~~-- 174 (234)
T cd04732 105 AVKNPELVKELLKEYGGE--RIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYT-DI-----SRDGTL-- 174 (234)
T ss_pred HHhChHHHHHHHHHcCCc--eEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEE-ee-----cCCCcc--
Confidence 345678888776654321 2333321 1 123456677777765 78887653 11 111121
Q ss_pred ccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEecccc
Q psy7344 163 LQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMA 226 (240)
Q Consensus 163 l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~~ 226 (240)
-..+++.++++.+. +++|+.+-..+.+..++.+.++.|++++.+ ||--
T Consensus 175 ~g~~~~~i~~i~~~---------------~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v-g~~~ 222 (234)
T cd04732 175 SGPNFELYKELAAA---------------TGIPVIASGGVSSLDDIKALKELGVAGVIV-GKAL 222 (234)
T ss_pred CCCCHHHHHHHHHh---------------cCCCEEEecCCCCHHHHHHHHHCCCCEEEE-eHHH
Confidence 23688888888764 466888877777777766655459999988 6653
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=91.30 E-value=3.4 Score=36.71 Aligned_cols=149 Identities=15% Similarity=-0.007 Sum_probs=81.2
Q ss_pred ccCCCcccCCCchhHHHHHHHhhcccCCCceeeccccc--------ccCCCccccccCchhhhhhhhcccceeeeCChhh
Q psy7344 31 RGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFI--------AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPL 102 (240)
Q Consensus 31 k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~--------lap~~~~~dl~~gC~~~i~~~g~~ga~l~~d~el 102 (240)
++..|-+-|++|..+.+| . +..+.|+.-+.+.- .+-.+|++|-..+ +.-..++
T Consensus 45 r~~ggv~R~~~p~~I~~I----~-~~V~iPVig~~kigh~~Ea~~L~~~GvDiIDeTe~--------------lrPade~ 105 (287)
T TIGR00343 45 RASGGVARMSDPKMIKEI----M-DAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEV--------------LTPADWT 105 (287)
T ss_pred HhcCCeeecCCHHHHHHH----H-HhCCCCEEEEeeccHHHHHHHHHHcCCCEEEccCC--------------CCcHHHH
Confidence 556788999999996655 4 35679987543311 1112333321110 0001344
Q ss_pred HHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecC--CCch-hhhhc----------c--c---------
Q psy7344 103 LTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINI--GCPQ-MVAKR----------G--H--------- 158 (240)
Q Consensus 103 i~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~--gCP~-~~~~~----------~--g--------- 158 (240)
+..++... ..|+. .|..++.++.+.++.|+|.|-.-. |=++ ..+.+ . +
T Consensus 106 ~~~~K~~f---~vpfm-----ad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~ 177 (287)
T TIGR00343 106 FHIDKKKF---KVPFV-----CGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAA 177 (287)
T ss_pred HHHHHHHc---CCCEE-----ccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhh
Confidence 44444332 34554 566777888888888888775431 1111 00000 0 0
Q ss_pred ccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeE--EeeehhcHHHHHHHHhCCCCeEEE
Q psy7344 159 YGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIG--CPQMVAKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 159 ~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvs--vK~r~~~~~~~~~~l~~G~~~iti 221 (240)
+...+..++++++++.+. .++||. +=..+.+..+.+..++.|++++.+
T Consensus 178 ~a~~~~~~~elLkei~~~---------------~~iPVV~fAiGGI~TPedAa~~melGAdGVaV 227 (287)
T TIGR00343 178 VAKELRVPVELLLEVLKL---------------GKLPVVNFAAGGVATPADAALMMQLGADGVFV 227 (287)
T ss_pred hhcccCCCHHHHHHHHHh---------------CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEE
Confidence 001123567777776653 356775 555566666777776669999988
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=91.13 E-value=1.8 Score=36.70 Aligned_cols=108 Identities=20% Similarity=0.056 Sum_probs=62.7
Q ss_pred eeCChhhHHHhhhcccCCCCceeEEeecC----------CHHHHHHHHHHHcc-CCCEEEec-CCCchhhhhcccccccc
Q psy7344 96 LQDDWPLLTELGFKTRSHMCGHSLMFCGN----------DSKNLTEAAKLAEP-HCDGIDIN-IGCPQMVAKRGHYGAYL 163 (240)
Q Consensus 96 l~~d~eli~~i~~~~~~~~~pvivqi~g~----------d~~~~~~aa~~le~-~~d~Idin-~gCP~~~~~~~g~G~~l 163 (240)
+..+++++.++..........+.+.+..+ ...+..+.++.+++ +++.+=+. .. +.++. .
T Consensus 104 ~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~-------~~g~~--~ 174 (230)
T TIGR00007 104 AVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDIS-------RDGTL--S 174 (230)
T ss_pred HhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeec-------CCCCc--C
Confidence 34567777777665432212222222211 12345667777755 78866542 21 11121 2
Q ss_pred cCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEecccccc
Q psy7344 164 QDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAML 228 (240)
Q Consensus 164 ~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~~~~ 228 (240)
..|++.++++.+. .++|+.+-..+.+..++.+.++.|++++.+ ||.-..
T Consensus 175 g~~~~~i~~i~~~---------------~~ipvia~GGi~~~~di~~~~~~Gadgv~i-g~a~~~ 223 (230)
T TIGR00007 175 GPNFELTKELVKA---------------VNVPVIASGGVSSIDDLIALKKLGVYGVIV-GKALYE 223 (230)
T ss_pred CCCHHHHHHHHHh---------------CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE-eHHHHc
Confidence 3689988888765 456777777777777777654339999988 765443
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.11 E-value=1.8 Score=41.56 Aligned_cols=90 Identities=9% Similarity=0.038 Sum_probs=56.8
Q ss_pred EeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEe
Q psy7344 120 MFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCP 199 (240)
Q Consensus 120 qi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK 199 (240)
.|..++..+...+...++.|+|+|.++.|.-...+.+.-.|.. ......+.++.+.+++ .++|+.+-
T Consensus 284 ~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g-~p~~~ai~~~~~~~~~------------~~v~vIad 350 (495)
T PTZ00314 284 DIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVG-RPQASAVYHVARYARE------------RGVPCIAD 350 (495)
T ss_pred eEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCC-CChHHHHHHHHHHHhh------------cCCeEEec
Confidence 3344666666677777778999999876621111111111111 2344555566665444 35788886
Q ss_pred eehhcHHHHHHHHhCCCCeEEEe
Q psy7344 200 QMVAKRGHYGAYLQDDWPLLTEL 222 (240)
Q Consensus 200 ~r~~~~~~~~~~l~~G~~~itih 222 (240)
..+.+..++++++..||+++.+-
T Consensus 351 GGi~~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 351 GGIKNSGDICKALALGADCVMLG 373 (495)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEC
Confidence 66777789999998899999883
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=91.09 E-value=1.4 Score=38.16 Aligned_cols=76 Identities=13% Similarity=0.018 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhc
Q psy7344 126 SKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAK 204 (240)
Q Consensus 126 ~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~ 204 (240)
..+..+.++.+++ |++.|.+.-- .+.|+.. ..|++.++++.+. +++||.+-..+.+
T Consensus 154 ~~~~~~~~~~l~~~G~~~iivt~i------~~~g~~~--g~~~~~~~~i~~~---------------~~ipvia~GGi~s 210 (254)
T TIGR00735 154 GLDAVEWAKEVEKLGAGEILLTSM------DKDGTKS--GYDLELTKAVSEA---------------VKIPVIASGGAGK 210 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeCc------CcccCCC--CCCHHHHHHHHHh---------------CCCCEEEeCCCCC
Confidence 3456677777765 8999888531 1233322 3688888887764 4567887777778
Q ss_pred HHHHHHHHhC-CCCeEEEeccc
Q psy7344 205 RGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 205 ~~~~~~~l~~-G~~~itih~R~ 225 (240)
..++.+.+.. |++++.+ ||.
T Consensus 211 ~~di~~~~~~g~~dgv~~-g~a 231 (254)
T TIGR00735 211 PEHFYEAFTKGKADAALA-ASV 231 (254)
T ss_pred HHHHHHHHHcCCcceeeE-hHH
Confidence 8888888888 7999877 554
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.81 Score=39.53 Aligned_cols=85 Identities=18% Similarity=0.022 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHcc-CCCEEEecCCCchhhh-hcccc-----cccc--cCCHHHHHHHHHHhhhccccccCCCCCCCCe
Q psy7344 124 NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVA-KRGHY-----GAYL--QDDWPLLTNLVYSPNMVHFVIAEPHCDGNDI 194 (240)
Q Consensus 124 ~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~-~~~g~-----G~~l--~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~ 194 (240)
.|.+.+.+.++.+++ |+|.|++|. |..-. ..|.. -.+| ..+.+..-++++.+++. .++
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~i--PfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~-----------~~~ 77 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGI--PFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKK-----------NTI 77 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--CCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc-----------CCC
Confidence 466788999998877 799999996 44211 11100 0000 12334555667776665 456
Q ss_pred eeEE--eee-hhc--HHHHHHHHhC-CCCeEEE
Q psy7344 195 NIGC--PQM-VAK--RGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 195 pvsv--K~r-~~~--~~~~~~~l~~-G~~~iti 221 (240)
|+.+ +.. +-. ..+|++.+.+ |++++++
T Consensus 78 pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giii 110 (242)
T cd04724 78 PIVLMGYYNPILQYGLERFLRDAKEAGVDGLII 110 (242)
T ss_pred CEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEE
Confidence 7543 322 112 4788999999 9999999
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.84 E-value=1.7 Score=41.55 Aligned_cols=84 Identities=14% Similarity=0.128 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHccCCCEEEecCCCchh-hhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh
Q psy7344 124 NDSKNLTEAAKLAEPHCDGIDINIGCPQM-VAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV 202 (240)
Q Consensus 124 ~d~~~~~~aa~~le~~~d~Idin~gCP~~-~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~ 202 (240)
++..+...+..+++.|+|+|.++.| |.. .+.+.-.|.. ..+.+.+.++.++.+. .++||.+-..+
T Consensus 275 g~v~t~e~a~~l~~aGad~i~vg~g-~gs~~~~r~~~~~g-~p~~~~~~~~~~~~~~------------~~~~viadGGi 340 (486)
T PRK05567 275 GNVATAEAARALIEAGADAVKVGIG-PGSICTTRIVAGVG-VPQITAIADAAEAAKK------------YGIPVIADGGI 340 (486)
T ss_pred eccCCHHHHHHHHHcCCCEEEECCC-CCccccceeecCCC-cCHHHHHHHHHHHhcc------------CCCeEEEcCCC
Confidence 5566666666777779999999877 431 1111111111 3466677777665443 35688887778
Q ss_pred hcHHHHHHHHhCCCCeEEE
Q psy7344 203 AKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 203 ~~~~~~~~~l~~G~~~iti 221 (240)
....+.++++..||+++.+
T Consensus 341 ~~~~di~kAla~GA~~v~~ 359 (486)
T PRK05567 341 RYSGDIAKALAAGASAVML 359 (486)
T ss_pred CCHHHHHHHHHhCCCEEEE
Confidence 8888999999889999987
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=90.54 E-value=1.3 Score=38.67 Aligned_cols=96 Identities=11% Similarity=0.002 Sum_probs=57.4
Q ss_pred eeEEeec--CCHHHHHHHHHHHcc-CCCEEEecCCCchhhh-----hcccccc-cccCCHHHHHHHHHHhhhccccccCC
Q psy7344 117 HSLMFCG--NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVA-----KRGHYGA-YLQDDWPLLTNLVYSPNMVHFVIAEP 187 (240)
Q Consensus 117 vivqi~g--~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~-----~~~g~G~-~l~~~p~~i~~iv~~~~~~~~~i~~~ 187 (240)
++.=+.. .|.+.+.++++.+.+ |+|.|||+.==..+.+ .+....+ .-.-+.+.+-++++.+++..
T Consensus 12 li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~------ 85 (256)
T TIGR00262 12 FIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKH------ 85 (256)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC------
Confidence 4444433 477788898888755 8999999762111111 1110000 00235566667777776531
Q ss_pred CCCCCCeeeEEeeehhcH------HHHHHHHhC-CCCeEEEec
Q psy7344 188 HCDGNDINIGCPQMVAKR------GHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 188 ~~~~~~~pvsvK~r~~~~------~~~~~~l~~-G~~~itih~ 223 (240)
.++|+. =+.+.+. .+|++.+.+ |++.+.+|-
T Consensus 86 ----~~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipD 123 (256)
T TIGR00262 86 ----PNIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVAD 123 (256)
T ss_pred ----CCCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEECC
Confidence 356765 3333333 789999999 999999985
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=90.41 E-value=1.9 Score=38.56 Aligned_cols=80 Identities=9% Similarity=-0.045 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+. .|+++|-++-+ +|....-.++.=.++++.+.+.+ +-++||.+=.-
T Consensus 23 D~~a~~~lv~~li~~Gv~gi~~~Gt----------tGE~~~Ls~eEr~~v~~~~v~~~---------~grvpviaG~g~~ 83 (299)
T COG0329 23 DEEALRRLVEFLIAAGVDGLVVLGT----------TGESPTLTLEERKEVLEAVVEAV---------GGRVPVIAGVGSN 83 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCC----------CccchhcCHHHHHHHHHHHHHHH---------CCCCcEEEecCCC
Confidence 6677777777764 58899988544 45545556666667777777751 13678887766
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih~ 223 (240)
..+++++++..++ |+|++.+..
T Consensus 84 ~t~eai~lak~a~~~Gad~il~v~ 107 (299)
T COG0329 84 STAEAIELAKHAEKLGADGILVVP 107 (299)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEeC
Confidence 5678899999999 999998843
|
|
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=90.36 E-value=1.3 Score=37.91 Aligned_cols=84 Identities=15% Similarity=-0.003 Sum_probs=58.1
Q ss_pred EEeecCCHHHHHHHHHHHcc-CCCE--EEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 119 LMFCGNDSKNLTEAAKLAEP-HCDG--IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 119 vqi~g~d~~~~~~aa~~le~-~~d~--Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++|...|...+.+-.+.+++ ++|. +|+==|. +--.+.--|+.++.+.+. . +++|
T Consensus 4 pSil~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~---------Fvpn~tfg~~~i~~i~~~---~-----------~~~~ 60 (220)
T PRK08883 4 PSILSADFARLGEDVEKVLAAGADVVHFDVMDNH---------YVPNLTFGAPICKALRDY---G-----------ITAP 60 (220)
T ss_pred hhhhhcCHHHHHHHHHHHHHcCCCEEEEecccCc---------ccCccccCHHHHHHHHHh---C-----------CCCC
Confidence 46667788888888888866 6664 4443332 111122345555555432 1 3679
Q ss_pred eEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 196 IGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 196 vsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+.+-+.+++...+.+.+.+ |+|.||+|.-.
T Consensus 61 ~dvHLMv~~p~~~i~~~~~~gad~i~~H~Ea 91 (220)
T PRK08883 61 IDVHLMVKPVDRIIPDFAKAGASMITFHVEA 91 (220)
T ss_pred EEEEeccCCHHHHHHHHHHhCCCEEEEcccC
Confidence 9999999999999999999 99999999874
|
|
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=90.36 E-value=2.2 Score=36.62 Aligned_cols=86 Identities=13% Similarity=-0.054 Sum_probs=59.7
Q ss_pred eeEEeecCCHHHHHHHHHHHcc-CCCE--EEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCC
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEP-HCDG--IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGND 193 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~-~~d~--Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~ 193 (240)
+..+|...|...+.+-.+.+++ ++|. +|+==|. +--.+.--|+.++ ++++.. ++
T Consensus 6 i~pSil~ad~~~l~~~i~~l~~~g~d~lHiDimDG~---------FVPN~tfg~~~i~----~lr~~~----------~~ 62 (223)
T PRK08745 6 IAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNH---------YVPNLTIGPMVCQ----ALRKHG----------IT 62 (223)
T ss_pred EEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCc---------cCCCcccCHHHHH----HHHhhC----------CC
Confidence 4567888899998888888876 6664 4443231 1111222455444 444320 36
Q ss_pred eeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 194 INIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 194 ~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+|+.+-+.+++...+.+.+.+ |++.||+|.-.
T Consensus 63 ~~~dvHLMv~~P~~~i~~~~~~gad~I~~H~Ea 95 (223)
T PRK08745 63 APIDVHLMVEPVDRIVPDFADAGATTISFHPEA 95 (223)
T ss_pred CCEEEEeccCCHHHHHHHHHHhCCCEEEEcccC
Confidence 799999999999999999999 99999999874
|
|
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=90.17 E-value=1.2 Score=38.44 Aligned_cols=67 Identities=13% Similarity=0.060 Sum_probs=43.5
Q ss_pred HHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHH
Q psy7344 132 AAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGA 210 (240)
Q Consensus 132 aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~ 210 (240)
+++.+++ ||..||- .|.|.. .|.. +.||..++.|++. .++||.+---+...-+.++
T Consensus 136 ~akrL~d~GcaavMP-lgsPIG------Sg~G-i~n~~~l~~i~~~---------------~~vPvIvDAGiG~pSdaa~ 192 (247)
T PF05690_consen 136 LAKRLEDAGCAAVMP-LGSPIG------SGRG-IQNPYNLRIIIER---------------ADVPVIVDAGIGTPSDAAQ 192 (247)
T ss_dssp HHHHHHHTT-SEBEE-BSSSTT------T----SSTHHHHHHHHHH---------------GSSSBEEES---SHHHHHH
T ss_pred HHHHHHHCCCCEEEe-cccccc------cCcC-CCCHHHHHHHHHh---------------cCCcEEEeCCCCCHHHHHH
Confidence 4555555 6777776 443533 3333 5899999888876 4668888777888888999
Q ss_pred HHhCCCCeEEE
Q psy7344 211 YLQDDWPLLTE 221 (240)
Q Consensus 211 ~l~~G~~~iti 221 (240)
+.|.|+|++-+
T Consensus 193 AMElG~daVLv 203 (247)
T PF05690_consen 193 AMELGADAVLV 203 (247)
T ss_dssp HHHTT-SEEEE
T ss_pred HHHcCCceeeh
Confidence 98889999876
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=90.04 E-value=0.94 Score=41.49 Aligned_cols=88 Identities=13% Similarity=0.110 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehh
Q psy7344 124 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVA 203 (240)
Q Consensus 124 ~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~ 203 (240)
+++.+..-+..+++.|+|+|-+++|.-+..+.+.-+|.. ......+.++.++.++ ..+||.+-.-+.
T Consensus 155 GNV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG-~PQ~tAv~~~a~~a~~------------~~v~iIADGGi~ 221 (352)
T PF00478_consen 155 GNVVTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVG-VPQLTAVYECAEAARD------------YGVPIIADGGIR 221 (352)
T ss_dssp EEE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBS-CTHHHHHHHHHHHHHC------------TTSEEEEESS-S
T ss_pred cccCCHHHHHHHHHcCCCEEEEeccCCcccccccccccC-CcHHHHHHHHHHHhhh------------ccCceeecCCcC
Confidence 555555555566677999999999954455555444432 2445566666665443 467998888888
Q ss_pred cHHHHHHHHhCCCCeEEEeccc
Q psy7344 204 KRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 204 ~~~~~~~~l~~G~~~itih~R~ 225 (240)
..-+++++|..|||++.+ |+.
T Consensus 222 ~sGDi~KAla~GAd~VMl-G~l 242 (352)
T PF00478_consen 222 TSGDIVKALAAGADAVML-GSL 242 (352)
T ss_dssp SHHHHHHHHHTT-SEEEE-STT
T ss_pred cccceeeeeeecccceee-chh
Confidence 889999999999999998 543
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=89.87 E-value=3.3 Score=38.13 Aligned_cols=95 Identities=17% Similarity=0.047 Sum_probs=59.3
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEe-cCCCchhhhhcccccccccCCH---HHHHHHH
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDI-NIGCPQMVAKRGHYGAYLQDDW---PLLTNLV 174 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idi-n~gCP~~~~~~~g~G~~l~~~p---~~i~~iv 174 (240)
+|+.++.+.... +.|++++=. -++ .++.+.++.|+|+|.+ |.|. ..+-..+ +.+.++.
T Consensus 211 tW~~i~~lr~~~---~~PvivKgV-~~~---~dA~~a~~~GvD~I~vsn~GG-----------r~~d~~~~t~~~L~ev~ 272 (364)
T PLN02535 211 SWKDIEWLRSIT---NLPILIKGV-LTR---EDAIKAVEVGVAGIIVSNHGA-----------RQLDYSPATISVLEEVV 272 (364)
T ss_pred CHHHHHHHHhcc---CCCEEEecC-CCH---HHHHHHHhcCCCEEEEeCCCc-----------CCCCCChHHHHHHHHHH
Confidence 588888876643 378888711 233 3455555679999987 3332 1121122 3333333
Q ss_pred HHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 175 YSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 175 ~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
+++. .++||.+-..+.+-.++++.|..||+++.+ ||-
T Consensus 273 ~av~-------------~~ipVi~dGGIr~g~Dv~KALalGA~aV~v-Gr~ 309 (364)
T PLN02535 273 QAVG-------------GRVPVLLDGGVRRGTDVFKALALGAQAVLV-GRP 309 (364)
T ss_pred HHHh-------------cCCCEEeeCCCCCHHHHHHHHHcCCCEEEE-CHH
Confidence 3321 246777766777888999999999999988 664
|
|
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=89.87 E-value=2.2 Score=37.65 Aligned_cols=80 Identities=10% Similarity=-0.003 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-..+.-.++++.+.+.+ . .++||.+-+-
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~~~Gs----------tGE~~~ls~~Er~~~~~~~~~~~--------~-~~~pvi~gv~~~ 80 (280)
T PLN02417 20 DLEAYDSLVNMQIENGAEGLIVGGT----------TGEGQLMSWDEHIMLIGHTVNCF--------G-GKIKVIGNTGSN 80 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc----------CcchhhCCHHHHHHHHHHHHHHh--------C-CCCcEEEECCCc
Confidence 667777777766 458999987543 34444445555566776655541 1 2578877665
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih~ 223 (240)
..+++++++..++ |+|++.++.
T Consensus 81 ~t~~~i~~a~~a~~~Gadav~~~~ 104 (280)
T PLN02417 81 STREAIHATEQGFAVGMHAALHIN 104 (280)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcC
Confidence 5678899999999 999999864
|
|
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=89.76 E-value=1.7 Score=39.92 Aligned_cols=96 Identities=15% Similarity=0.071 Sum_probs=60.3
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccc---cCCHHHHHHHHH
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL---QDDWPLLTNLVY 175 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l---~~~p~~i~~iv~ 175 (240)
+|+-|+.+.... ..|++++= +-+..++.+..+.|+++|++.-. ||+ ++ ..-.+.+.++.+
T Consensus 213 ~w~~i~~~~~~~---~~pvivKg----v~~~~da~~~~~~G~~~i~vs~h--------GGr--~~d~~~~~~~~L~~i~~ 275 (356)
T PF01070_consen 213 TWDDIEWIRKQW---KLPVIVKG----VLSPEDAKRAVDAGVDGIDVSNH--------GGR--QLDWGPPTIDALPEIRA 275 (356)
T ss_dssp SHHHHHHHHHHC---SSEEEEEE----E-SHHHHHHHHHTT-SEEEEESG--------TGT--SSTTS-BHHHHHHHHHH
T ss_pred CHHHHHHHhccc---CCceEEEe----cccHHHHHHHHhcCCCEEEecCC--------Ccc--cCccccccccccHHHHh
Confidence 487788877654 47999872 13444566667779999998422 222 22 233445555555
Q ss_pred HhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 176 SPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 176 ~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
++. .++||.+-.-+.+-.+.++.+.-||+++.+ ||.
T Consensus 276 ~~~-------------~~~~i~~dgGir~g~Dv~kalaLGA~~v~i-gr~ 311 (356)
T PF01070_consen 276 AVG-------------DDIPIIADGGIRRGLDVAKALALGADAVGI-GRP 311 (356)
T ss_dssp HHT-------------TSSEEEEESS--SHHHHHHHHHTT-SEEEE-SHH
T ss_pred hhc-------------CCeeEEEeCCCCCHHHHHHHHHcCCCeEEE-ccH
Confidence 442 356888877788888999999999999988 664
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=89.75 E-value=1.7 Score=38.14 Aligned_cols=77 Identities=18% Similarity=0.163 Sum_probs=53.4
Q ss_pred CCHHHHHHHHH-HHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh
Q psy7344 124 NDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV 202 (240)
Q Consensus 124 ~d~~~~~~aa~-~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~ 202 (240)
.|.+...+.|+ ++++|+|.||||.+-+ .-..++.+..+++.+++. +++|+++-..-
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~------------~~eE~~r~~~~v~~l~~~-----------~~~plsIDT~~ 78 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTA------------VEEEPETMEWLVETVQEV-----------VDVPLCIDSPN 78 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCC------------chhHHHHHHHHHHHHHHh-----------CCCCEEEeCCC
Confidence 57777666554 5577999999998811 113577888888888776 56777776660
Q ss_pred ----------------------h--cHHHHHHHHhC-CCCeEEEec
Q psy7344 203 ----------------------A--KRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 203 ----------------------~--~~~~~~~~l~~-G~~~itih~ 223 (240)
. ...++++.+.+ |+..+.+|.
T Consensus 79 ~~v~eaaL~~~~G~~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 79 PAAIEAGLKVAKGPPLINSVSAEGEKLEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred HHHHHHHHHhCCCCCEEEeCCCCCccCHHHHHHHHHhCCCEEEEec
Confidence 0 12356666778 999998886
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=89.71 E-value=2.9 Score=38.06 Aligned_cols=85 Identities=9% Similarity=-0.013 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehh
Q psy7344 124 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVA 203 (240)
Q Consensus 124 ~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~ 203 (240)
+++.+.+.+..+++.|+|+|-++.|.-+..+.+.-.|.. ......+.++.+++.. .++||.+-.-+.
T Consensus 156 GNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg-~pqltAv~~~a~aa~~------------~~v~VIaDGGIr 222 (343)
T TIGR01305 156 GNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVG-YPQLSAVIECADAAHG------------LKGHIISDGGCT 222 (343)
T ss_pred ecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCC-cCHHHHHHHHHHHhcc------------CCCeEEEcCCcC
Confidence 566666667677778999999998833333333333332 1455666666666543 356787777777
Q ss_pred cHHHHHHHHhCCCCeEEE
Q psy7344 204 KRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 204 ~~~~~~~~l~~G~~~iti 221 (240)
.--+++++|..|||++.+
T Consensus 223 ~~gDI~KALA~GAd~VMl 240 (343)
T TIGR01305 223 CPGDVAKAFGAGADFVML 240 (343)
T ss_pred chhHHHHHHHcCCCEEEE
Confidence 778999999889999988
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=89.67 E-value=2.4 Score=37.61 Aligned_cols=80 Identities=8% Similarity=-0.074 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.-.++++.+.+.+ . .++||.+-+-
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v~Gs----------tGE~~~Lt~eEr~~v~~~~~~~~--------~-g~~pvi~gv~~~ 84 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFAAGG----------TGEFFSLTPAEYEQVVEIAVSTA--------K-GKVPVYTGVGGN 84 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCC----------CcCcccCCHHHHHHHHHHHHHHh--------C-CCCcEEEecCcc
Confidence 667777777776 458999987544 44445456666667777665541 1 2567766655
Q ss_pred hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 ~~~~~~~~~~l~~-G~~~itih~ 223 (240)
+.++++.++.+++ |+|++.+..
T Consensus 85 t~~ai~~a~~a~~~Gadav~~~p 107 (296)
T TIGR03249 85 TSDAIEIARLAEKAGADGYLLLP 107 (296)
T ss_pred HHHHHHHHHHHHHhCCCEEEECC
Confidence 5677889999999 999998854
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=89.62 E-value=2.5 Score=37.47 Aligned_cols=80 Identities=11% Similarity=0.140 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHH-ccC-CCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee-
Q psy7344 125 DSKNLTEAAKLA-EPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~-~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r- 201 (240)
|.+.+.+.++.+ +.| +++|-++-. +|....-.++.-.++++.+.+.+ . .++||.+-+.
T Consensus 19 D~~~~~~~i~~~i~~G~v~gi~~~Gs----------tGE~~~Lt~eEr~~~~~~~~~~~--------~-~~~pvi~gv~~ 79 (290)
T TIGR00683 19 NEKGLRQIIRHNIDKMKVDGLYVGGS----------TGENFMLSTEEKKEIFRIAKDEA--------K-DQIALIAQVGS 79 (290)
T ss_pred CHHHHHHHHHHHHhCCCcCEEEECCc----------ccccccCCHHHHHHHHHHHHHHh--------C-CCCcEEEecCC
Confidence 666777777765 457 889877543 44444446666667777666641 1 2578877765
Q ss_pred --hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 --VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 --~~~~~~~~~~l~~-G~~~itih~ 223 (240)
..+++++++..++ |+|++.+..
T Consensus 80 ~~t~~~i~la~~a~~~Gad~v~v~~ 104 (290)
T TIGR00683 80 VNLKEAVELGKYATELGYDCLSAVT 104 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 6678999999999 999999843
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=89.58 E-value=3.8 Score=37.75 Aligned_cols=96 Identities=15% Similarity=-0.021 Sum_probs=60.2
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCC---HHHHHHHHH
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD---WPLLTNLVY 175 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~---p~~i~~iv~ 175 (240)
+|+-++.+.... +.|++++=. .+..++.+.++.|+|+|++.-+ +| .++-.- -+.+.++.+
T Consensus 211 tW~dl~wlr~~~---~~PvivKgV----~~~~dA~~a~~~Gvd~I~Vsnh--------GG--rqld~~p~t~~~L~ei~~ 273 (366)
T PLN02979 211 SWKDVQWLQTIT---KLPILVKGV----LTGEDARIAIQAGAAGIIVSNH--------GA--RQLDYVPATISALEEVVK 273 (366)
T ss_pred CHHHHHHHHhcc---CCCEEeecC----CCHHHHHHHHhcCCCEEEECCC--------Cc--CCCCCchhHHHHHHHHHH
Confidence 477777776543 479988732 2344566667779999987433 22 222111 223333333
Q ss_pred HhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 176 SPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 176 ~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
++. .++||.+-..+..-.+++++|..||+++.+ ||-
T Consensus 274 ~~~-------------~~~~Vi~dGGIr~G~Di~KALALGAdaV~i-Grp 309 (366)
T PLN02979 274 ATQ-------------GRIPVFLDGGVRRGTDVFKALALGASGIFI-GRP 309 (366)
T ss_pred HhC-------------CCCeEEEeCCcCcHHHHHHHHHcCCCEEEE-cHH
Confidence 321 246777777777888999999999999988 664
|
|
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.45 E-value=1.9 Score=41.49 Aligned_cols=99 Identities=15% Similarity=0.086 Sum_probs=65.1
Q ss_pred EEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEE
Q psy7344 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGC 198 (240)
Q Consensus 119 vqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsv 198 (240)
+.|.++++.+...+..+++.|+|+|-++.|--+..+.+.-.|.. ......+.++.++.++.... .+.++||.+
T Consensus 285 ~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g-~~~~~ai~~~~~a~~~~~~~------~g~~~~via 357 (502)
T PRK07107 285 VKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIG-RGQATALIEVAKARDEYFEE------TGVYIPICS 357 (502)
T ss_pred ceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCC-ccHHHHHHHHHHHHHHHHhh------cCCcceEEE
Confidence 45566777777777777788999999988843344444223332 24566677777765431000 013467777
Q ss_pred eeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 199 PQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 199 K~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
-.-+..--+++++|..|||++.+ ||.
T Consensus 358 dgGir~~gdi~KAla~GA~~vm~-G~~ 383 (502)
T PRK07107 358 DGGIVYDYHMTLALAMGADFIML-GRY 383 (502)
T ss_pred cCCCCchhHHHHHHHcCCCeeee-Chh
Confidence 76677778899999889999988 665
|
|
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=89.42 E-value=2.5 Score=37.70 Aligned_cols=80 Identities=10% Similarity=-0.014 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+. .|++||=+|-+ +|....-.++.-.++++.+.+.+ . .++||.+-+.
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~Gs----------tGE~~~Lt~eEr~~~~~~~~~~~--------~-~~~pvi~gv~~~ 86 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAAGG----------TGEFFSLTPDEYSQVVRAAVETT--------A-GRVPVIAGAGGG 86 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcC----------CcCcccCCHHHHHHHHHHHHHHh--------C-CCCcEEEecCCC
Confidence 6677777777775 48999987544 44444445555556776665541 1 2567765554
Q ss_pred hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 ~~~~~~~~~~l~~-G~~~itih~ 223 (240)
+.+++++++.+++ |+|++.+..
T Consensus 87 t~~~i~~~~~a~~~Gadav~~~p 109 (303)
T PRK03620 87 TAQAIEYAQAAERAGADGILLLP 109 (303)
T ss_pred HHHHHHHHHHHHHhCCCEEEECC
Confidence 5677899999999 999998843
|
|
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=89.35 E-value=1.7 Score=38.55 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=52.6
Q ss_pred HHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHH
Q psy7344 131 EAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYG 209 (240)
Q Consensus 131 ~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~ 209 (240)
+-|+..|+ |+-+||-----|..+-..| |-+-+.+|+.|++|.++ +++||..|.|... ..-+
T Consensus 21 eqa~iae~aga~avm~le~~p~d~r~~g--gv~R~~~p~~I~~I~~~---------------V~iPVig~~kigh-~~Ea 82 (287)
T TIGR00343 21 EQAKIAEEAGAVAVMALERVPADIRASG--GVARMSDPKMIKEIMDA---------------VSIPVMAKVRIGH-FVEA 82 (287)
T ss_pred HHHHHHHHcCceEEEeeccCchhhHhcC--CeeecCCHHHHHHHHHh---------------CCCCEEEEeeccH-HHHH
Confidence 34566665 7777775555587653333 44558999999888876 6889999999654 5567
Q ss_pred HHHhC-CCCeEE
Q psy7344 210 AYLQD-DWPLLT 220 (240)
Q Consensus 210 ~~l~~-G~~~it 220 (240)
+.|++ |+|.|-
T Consensus 83 ~~L~~~GvDiID 94 (287)
T TIGR00343 83 QILEALGVDYID 94 (287)
T ss_pred HHHHHcCCCEEE
Confidence 88899 999995
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=89.33 E-value=1.4 Score=35.22 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=26.2
Q ss_pred ccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccC-CCceeec
Q psy7344 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSK-NGPLFMG 64 (240)
Q Consensus 9 ~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~-~~p~~vk 64 (240)
...+.++|.|.+|.+||.. +.+..+++.++. +.. +.|+.++
T Consensus 79 ~~~~~g~d~v~l~~~~~~~--------------~~~~~~~~~~i~-~~~~~~~v~~~ 120 (200)
T cd04722 79 AARAAGADGVEIHGAVGYL--------------AREDLELIRELR-EAVPDVKVVVK 120 (200)
T ss_pred HHHHcCCCEEEEeccCCcH--------------HHHHHHHHHHHH-HhcCCceEEEE
Confidence 3445678888888888764 566666677777 232 4555544
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.91 E-value=3 Score=39.39 Aligned_cols=84 Identities=14% Similarity=0.140 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHHccCCCEEEecCCCch-hhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh
Q psy7344 124 NDSKNLTEAAKLAEPHCDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV 202 (240)
Q Consensus 124 ~d~~~~~~aa~~le~~~d~Idin~gCP~-~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~ 202 (240)
++..+...+...++.|+|+|.++.| |- ..+.+.-.|.. ......+.++.+.+++ .++||.+-..+
T Consensus 271 G~v~t~~~a~~l~~aGad~i~vg~g-~G~~~~t~~~~~~g-~p~~~~i~~~~~~~~~------------~~vpviadGGi 336 (450)
T TIGR01302 271 GNVATAEQAKALIDAGADGLRVGIG-PGSICTTRIVAGVG-VPQITAVYDVAEYAAQ------------SGIPVIADGGI 336 (450)
T ss_pred EeCCCHHHHHHHHHhCCCEEEECCC-CCcCCccceecCCC-ccHHHHHHHHHHHHhh------------cCCeEEEeCCC
Confidence 5555556666667779999998765 21 11111101110 1344566666665443 46788887778
Q ss_pred hcHHHHHHHHhCCCCeEEE
Q psy7344 203 AKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 203 ~~~~~~~~~l~~G~~~iti 221 (240)
....+.+++|..||+++.+
T Consensus 337 ~~~~di~kAla~GA~~V~~ 355 (450)
T TIGR01302 337 RYSGDIVKALAAGADAVML 355 (450)
T ss_pred CCHHHHHHHHHcCCCEEEE
Confidence 8888999999889999987
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=88.90 E-value=12 Score=34.08 Aligned_cols=131 Identities=10% Similarity=0.035 Sum_probs=76.7
Q ss_pred eecccccccCCCccccccCchhhhhhhhcccceeee-CChhhHHHhhhcccCC-CCceeEEeecCCHHHHHHHHHHHcc-
Q psy7344 62 FMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQ-DDWPLLTELGFKTRSH-MCGHSLMFCGNDSKNLTEAAKLAEP- 138 (240)
Q Consensus 62 ~vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~-~d~eli~~i~~~~~~~-~~pvivqi~g~d~~~~~~aa~~le~- 138 (240)
+.+.+.+-+.|...++..+- ..++.+|..+..-. .+.+--.+.+....++ ..-+.+.+ |-.++++..+.++++.
T Consensus 43 ~~~iPii~AnMdtv~~~~mA--~~la~~g~~~~iHk~~~~e~~~~~v~~~~~~~~~~~~vsv-G~~~~d~er~~~L~~a~ 119 (343)
T TIGR01305 43 YSGVPIIAANMDTVGTFEMA--AALSQHSIFTAIHKHYSVDEWKAFATNSSPDCLQNVAVSS-GSSDNDLEKMTSILEAV 119 (343)
T ss_pred eeCCceEecCCCcccCHHHH--HHHHHCCCeEEEeeCCCHHHHHHHHHhhcccccceEEEEe-ccCHHHHHHHHHHHhcC
Confidence 34556677899999988874 77888877666332 3333222222221111 12234433 3356667777777776
Q ss_pred -CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CC
Q psy7344 139 -HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DW 216 (240)
Q Consensus 139 -~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~ 216 (240)
++|.|-|-.. |+ +-+.+.+.++++++. ..-+..+|.-+.+ .+-++.|.+ ||
T Consensus 120 ~~~d~iviD~A-------hG--------hs~~~i~~ik~ir~~-----------~p~~~viaGNV~T-~e~a~~Li~aGA 172 (343)
T TIGR01305 120 PQLKFICLDVA-------NG--------YSEHFVEFVKLVREA-----------FPEHTIMAGNVVT-GEMVEELILSGA 172 (343)
T ss_pred CCCCEEEEECC-------CC--------cHHHHHHHHHHHHhh-----------CCCCeEEEecccC-HHHHHHHHHcCC
Confidence 4787655444 22 445666778888876 4445666665533 345666677 99
Q ss_pred CeEEEe
Q psy7344 217 PLLTEL 222 (240)
Q Consensus 217 ~~itih 222 (240)
|.|-+-
T Consensus 173 D~ikVg 178 (343)
T TIGR01305 173 DIVKVG 178 (343)
T ss_pred CEEEEc
Confidence 999763
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=88.84 E-value=3 Score=37.02 Aligned_cols=80 Identities=8% Similarity=-0.085 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+. .|++||-++-. +|....-..+.-.++++.+.+.+ . -++||.+-+-
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~Gs----------tGE~~~Ls~~Er~~l~~~~~~~~--------~-g~~pvi~gv~~~ 79 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGGT----------SGEPGSLTLEERKQAIENAIDQI--------A-GRIPFAPGTGAL 79 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc----------CcccccCCHHHHHHHHHHHHHHh--------C-CCCcEEEECCcc
Confidence 6677777777764 48899877544 34444334444456666555431 1 2578876665
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih~ 223 (240)
..+++++++..++ |+|++.+..
T Consensus 80 ~t~~ai~~a~~A~~~Gad~v~v~p 103 (294)
T TIGR02313 80 NHDETLELTKFAEEAGADAAMVIV 103 (294)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcC
Confidence 5677899999999 999999855
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=88.72 E-value=3.3 Score=35.29 Aligned_cols=87 Identities=21% Similarity=0.218 Sum_probs=54.0
Q ss_pred ceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCe
Q psy7344 116 GHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDI 194 (240)
Q Consensus 116 pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~ 194 (240)
.+..++...|...+.+.++.+++ |++.|-+.. ..+.+...+.--|+.++++ ++. ++.
T Consensus 9 ~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~-------~d~~f~~~~~~g~~~~~~l----~~~-----------~~~ 66 (229)
T PLN02334 9 IIAPSILSADFANLAEEAKRVLDAGADWLHVDV-------MDGHFVPNLTIGPPVVKAL----RKH-----------TDA 66 (229)
T ss_pred eEEeehhhcCHHHHHHHHHHHHHcCCCEEEEec-------ccCCcCCccccCHHHHHHH----Hhc-----------CCC
Confidence 35556665676677777777655 677665521 1222212222234444444 443 455
Q ss_pred eeEEeeehhcHHHHHHHHhC-CCCeEEEecc
Q psy7344 195 NIGCPQMVAKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 195 pvsvK~r~~~~~~~~~~l~~-G~~~itih~R 224 (240)
++.+.+.+.+..++.+.+.+ |+|.|++|.-
T Consensus 67 ~~~vhlmv~~p~d~~~~~~~~gad~v~vH~~ 97 (229)
T PLN02334 67 PLDCHLMVTNPEDYVPDFAKAGASIFTFHIE 97 (229)
T ss_pred cEEEEeccCCHHHHHHHHHHcCCCEEEEeec
Confidence 77777777777788888888 9999999987
|
|
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=88.68 E-value=8.1 Score=33.85 Aligned_cols=145 Identities=14% Similarity=0.069 Sum_probs=75.6
Q ss_pred cccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCC-C--ccccccCch-h
Q psy7344 8 RIETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPH-C--DGIDINIGC-P 83 (240)
Q Consensus 8 ~~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~-~--~~~dl~~gC-~ 83 (240)
+.|.+.|+|.|++.++.... ....|+....+.+.+.++..... .+.++.+ +..+. . +.++....| .
T Consensus 27 ~~L~~~GVd~IEvG~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~----~~~~~~~~~~~l~~a~~~gv 96 (266)
T cd07944 27 RALAAAGIDYVEIGYRSSPE---KEFKGKSAFCDDEFLRRLLGDSK---GNTKIAV----MVDYGNDDIDLLEPASGSVV 96 (266)
T ss_pred HHHHHCCCCEEEeecCCCCc---cccCCCccCCCHHHHHHHHhhhc---cCCEEEE----EECCCCCCHHHHHHHhcCCc
Confidence 45777889999888755543 33455666666666554433221 1222221 11111 1 111111111 0
Q ss_pred hhhhhhcccceeeeCChhhHHHhhhcccCCCCceeEEee---cCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccc
Q psy7344 84 QMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFC---GNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHY 159 (240)
Q Consensus 84 ~~i~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi~---g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~ 159 (240)
..+.+ ++-..+.+.+.+.+...+.....+.+++. ..+++.+.+.++.+.+ +++.|-|-=- .
T Consensus 97 ~~iri-----~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT----------~ 161 (266)
T cd07944 97 DMIRV-----AFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDS----------F 161 (266)
T ss_pred CEEEE-----ecccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecC----------C
Confidence 11110 11122344444444433333334555543 3578888899888865 7777755211 2
Q ss_pred cccccCCHHHHHHHHHHhhhc
Q psy7344 160 GAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 160 G~~l~~~p~~i~~iv~~~~~~ 180 (240)
| ...|+.+.++++.+++.
T Consensus 162 G---~~~P~~v~~lv~~l~~~ 179 (266)
T cd07944 162 G---SMYPEDIKRIISLLRSN 179 (266)
T ss_pred C---CCCHHHHHHHHHHHHHh
Confidence 3 36999999999999987
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Probab=88.67 E-value=3.6 Score=38.19 Aligned_cols=92 Identities=11% Similarity=-0.058 Sum_probs=56.8
Q ss_pred CceeEEeecC-CHHHHHHHHHHHccC-CCEEEecCCCchhhhhcccccccc--------cCCHHHHHHHHHHhhhccccc
Q psy7344 115 CGHSLMFCGN-DSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYL--------QDDWPLLTNLVYSPNMVHFVI 184 (240)
Q Consensus 115 ~pvivqi~g~-d~~~~~~aa~~le~~-~d~Idin~gCP~~~~~~~g~G~~l--------~~~p~~i~~iv~~~~~~~~~i 184 (240)
.|+++++.+. +++ ++++.++.+ +|+|.+.-+ .+|+|.+- +.--..+.++.+++.+.
T Consensus 215 ~pV~vK~~~~~~~~---~~a~~~~~~g~D~I~VsG~-------~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~---- 280 (392)
T cd02808 215 KPIGVKLVAGHGEG---DIAAGVAAAGADFITIDGA-------EGGTGAAPLTFIDHVGLPTELGLARAHQALVKN---- 280 (392)
T ss_pred ceEEEEECCCCCHH---HHHHHHHHcCCCEEEEeCC-------CCCCCCCcccccccCCccHHHHHHHHHHHHHHc----
Confidence 6999998765 444 566777665 999998544 12222210 12223444555544331
Q ss_pred cCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 185 AEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 185 ~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
.. ..++||.+-..+.+-.++++++..|||++.+ ||.
T Consensus 281 ~~----~~~i~viasGGI~~g~Dv~kalaLGAd~V~i-g~~ 316 (392)
T cd02808 281 GL----RDRVSLIASGGLRTGADVAKALALGADAVGI-GTA 316 (392)
T ss_pred CC----CCCCeEEEECCCCCHHHHHHHHHcCCCeeee-chH
Confidence 00 0256777766677888999999889999988 554
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. |
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.40 E-value=3.2 Score=36.63 Aligned_cols=79 Identities=9% Similarity=-0.056 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+. .|++||-+|-+ +|....-..+.=.++++.+.+.+ . .++||.+-+-
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~~Gs----------~GE~~~ls~~Er~~~~~~~~~~~--------~-~~~~vi~gv~~~ 80 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVVVGT----------TGESPTLTHEEHEELIRAVVEAV--------N-GRVPVIAGTGSN 80 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCc----------CCccccCCHHHHHHHHHHHHHHh--------C-CCCcEEeecCCc
Confidence 6777778777764 58999988543 33334334444456666655541 1 2467766555
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
+.++++.++.+++ |+|++.+.
T Consensus 81 ~~~~~i~~a~~a~~~G~d~v~~~ 103 (292)
T PRK03170 81 STAEAIELTKFAEKAGADGALVV 103 (292)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEC
Confidence 5678999999999 99999984
|
|
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=88.22 E-value=3.3 Score=36.25 Aligned_cols=85 Identities=12% Similarity=-0.064 Sum_probs=61.2
Q ss_pred CceeEEeecCCHHHHHHHHHHHcc-CCCE--EEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLAEP-HCDG--IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~le~-~~d~--Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
.++.++|...|...+.+..+.+++ ++|. +|+==| .+--.+.--|+.++.+.
T Consensus 20 ~~IspSil~aD~~~L~~el~~l~~~g~d~lHiDVMDG---------~FVPNitfGp~~i~~i~----------------- 73 (254)
T PRK14057 20 YPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDG---------QFCPQFTVGPWAVGQLP----------------- 73 (254)
T ss_pred CceEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCC---------ccCCccccCHHHHHHhc-----------------
Confidence 578889999999999998888876 6664 444222 22111223455555552
Q ss_pred CCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 192 NDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 192 ~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.++|+.+-+.+.+...+.+.+.+ |+|.||+|.-.
T Consensus 74 ~~~p~DvHLMV~~P~~~i~~~~~aGad~It~H~Ea 108 (254)
T PRK14057 74 QTFIKDVHLMVADQWTAAQACVKAGAHCITLQAEG 108 (254)
T ss_pred cCCCeeEEeeeCCHHHHHHHHHHhCCCEEEEeecc
Confidence 23588888888899999999999 99999999874
|
|
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=88.17 E-value=3.1 Score=36.79 Aligned_cols=78 Identities=8% Similarity=-0.062 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+. .|++||-++-+ +|....-..+.-.++++.+.+.+ . .++||.+-+.
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~Gs----------tGE~~~Ls~eEr~~l~~~~~~~~--------~-~~~pvi~gv~~~ 79 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAAGG----------TGEFFSLTPDEYAQVVRAAVEET--------A-GRVPVLAGAGYG 79 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcC----------CcCcccCCHHHHHHHHHHHHHHh--------C-CCCCEEEecCCC
Confidence 6677777777664 58999987544 34434334444456666555541 0 2567766555
Q ss_pred hhcHHHHHHHHhC-CCCeEEE
Q psy7344 202 VAKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 202 ~~~~~~~~~~l~~-G~~~iti 221 (240)
..+++++++.+++ |+|++.+
T Consensus 80 t~~~i~~a~~a~~~Gad~v~~ 100 (289)
T cd00951 80 TATAIAYAQAAEKAGADGILL 100 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEE
Confidence 5667889999999 9999988
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >cd00740 MeTr MeTr subgroup of pterin binding enzymes | Back alignment and domain information |
|---|
Probab=88.15 E-value=2.8 Score=36.53 Aligned_cols=78 Identities=9% Similarity=-0.021 Sum_probs=51.2
Q ss_pred CCHHHHHHHHH-HHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh
Q psy7344 124 NDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV 202 (240)
Q Consensus 124 ~d~~~~~~aa~-~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~ 202 (240)
.|.+...+.++ ++++|+|.||||.+ |. .....+.+.+++..+++. +++|+|+-..-
T Consensus 23 ~~~d~~~~~A~~~~~~GAdiIDIG~~-~~-----------~~~~~ee~~r~v~~i~~~-----------~~~piSIDT~~ 79 (252)
T cd00740 23 EDYDEALDVARQQVEGGAQILDLNVD-YG-----------GLDGVSAMKWLLNLLATE-----------PTVPLMLDSTN 79 (252)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCC-CC-----------CCCHHHHHHHHHHHHHHh-----------cCCcEEeeCCc
Confidence 56676666544 55779999999986 32 123456677777666665 46677776651
Q ss_pred ----------------------hc----HHHHHHHHhC-CCCeEEEecc
Q psy7344 203 ----------------------AK----RGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 203 ----------------------~~----~~~~~~~l~~-G~~~itih~R 224 (240)
.. ..+++..+.+ |+..|.+|..
T Consensus 80 ~~v~e~aL~~~~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 80 WEVIEAGLKCCQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred HHHHHHHHhhCCCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEeccC
Confidence 01 2345566777 9999999974
|
This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH. |
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.12 E-value=3.9 Score=37.51 Aligned_cols=76 Identities=4% Similarity=-0.153 Sum_probs=47.3
Q ss_pred CCHHH-HHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee
Q psy7344 124 NDSKN-LTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM 201 (240)
Q Consensus 124 ~d~~~-~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r 201 (240)
.+.++ +.++++.|++ ++|.|++..+ .. ..+ ..+ . ..+.+.+++. +++||.+-.+
T Consensus 245 ~~~~e~~~~~~~~L~~~giD~i~vs~~--~~---~~~--~~~--~----~~~~~~ik~~-----------~~~pv~~~G~ 300 (362)
T PRK10605 245 PNEEADALYLIEQLGKRGIAYLHMSEP--DW---AGG--EPY--S----DAFREKVRAR-----------FHGVIIGAGA 300 (362)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEeccc--cc---cCC--ccc--c----HHHHHHHHHH-----------CCCCEEEeCC
Confidence 35666 6888999876 7899998654 11 111 111 1 2333455555 5668887767
Q ss_pred hhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 202 VAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 202 ~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+ +.....+.+++ .+|.|.+ ||-
T Consensus 301 ~-~~~~ae~~i~~G~~D~V~~-gR~ 323 (362)
T PRK10605 301 Y-TAEKAETLIGKGLIDAVAF-GRD 323 (362)
T ss_pred C-CHHHHHHHHHcCCCCEEEE-CHH
Confidence 5 55555556666 6999998 774
|
|
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=88.11 E-value=5.8 Score=34.01 Aligned_cols=108 Identities=10% Similarity=-0.037 Sum_probs=72.5
Q ss_pred eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHH
Q psy7344 97 QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176 (240)
Q Consensus 97 ~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~ 176 (240)
..|+++++.++... ..|+-|+ +-+|+.+..+. +.|+|-|||+-- ..-...| . .=+-+.+-++.+.
T Consensus 47 Aadp~LV~~~~~~s---~lPICVS--aVep~~f~~aV---~AGAdliEIGNf---DsFY~qG--r--~f~a~eVL~Lt~~ 111 (242)
T PF04481_consen 47 AADPELVKLAKSLS---NLPICVS--AVEPELFVAAV---KAGADLIEIGNF---DSFYAQG--R--RFSAEEVLALTRE 111 (242)
T ss_pred cCCHHHHHHHHHhC---CCCeEee--cCCHHHHHHHH---HhCCCEEEecch---HHHHhcC--C--eecHHHHHHHHHH
Confidence 67899998765432 4687665 35777666554 468999998532 1111121 1 1255677788888
Q ss_pred hhhccccccCCCCCCCCeeeEEeee----hhcHHHHHHHHhC-CCCeEEEeccccccc
Q psy7344 177 PNMVHFVIAEPHCDGNDINIGCPQM----VAKRGHYGAYLQD-DWPLLTELGKMAMLV 229 (240)
Q Consensus 177 ~~~~~~~i~~~~~~~~~~pvsvK~r----~~~~~~~~~~l~~-G~~~itih~R~~~~~ 229 (240)
.|+-. .++|++|-+- ++.-++++..|++ |+|.|.--|-|....
T Consensus 112 tR~LL----------P~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p 159 (242)
T PF04481_consen 112 TRSLL----------PDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTEGGTSSKP 159 (242)
T ss_pred HHHhC----------CCCceEEecCccccHHHHHHHHHHHHHhCCcEEEcCCCCCCCC
Confidence 88874 3456666555 4667899999999 999998888777654
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >PRK11613 folP dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.09 E-value=2.3 Score=37.78 Aligned_cols=82 Identities=10% Similarity=-0.078 Sum_probs=50.4
Q ss_pred CHHHHHH-HHHHHccCCCEEEecCCCchhhhhcccccccccCCHHH---HHHHHHHhhhccccccCCCCCCCCeeeEEee
Q psy7344 125 DSKNLTE-AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPL---LTNLVYSPNMVHFVIAEPHCDGNDINIGCPQ 200 (240)
Q Consensus 125 d~~~~~~-aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~---i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~ 200 (240)
+++...+ +.+++++|+|.||||.-- .+-|+......+. +..+++.+++. .++|+|+-+
T Consensus 36 ~~~~a~~~a~~~~~~GAdIIDIGgeS-------TrPg~~~v~~eeE~~Rv~pvI~~l~~~-----------~~~~ISIDT 97 (282)
T PRK11613 36 SLIDAVKHANLMINAGATIIDVGGES-------TRPGAAEVSVEEELDRVIPVVEAIAQR-----------FEVWISVDT 97 (282)
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCC-------CCCCCCCCCHHHHHHHHHHHHHHHHhc-----------CCCeEEEEC
Confidence 5665554 445567899999998441 1112322333344 44456666654 467898887
Q ss_pred eh---------------hc-----HHHHHHHHhC-CCCeEEEecc
Q psy7344 201 MV---------------AK-----RGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 201 r~---------------~~-----~~~~~~~l~~-G~~~itih~R 224 (240)
.- .+ ..++++.+.+ |+..|.+|.|
T Consensus 98 ~~~~va~~AL~~GadiINDI~g~~d~~~~~~~a~~~~~vVlmh~~ 142 (282)
T PRK11613 98 SKPEVIRESAKAGAHIINDIRSLSEPGALEAAAETGLPVCLMHMQ 142 (282)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCC
Confidence 71 11 1355667778 9999999976
|
|
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=88.02 E-value=3.7 Score=36.13 Aligned_cols=80 Identities=9% Similarity=-0.051 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-..+.-.++++.+.+.+ . -++||.+-+-
T Consensus 17 D~~~~~~~i~~l~~~Gv~Gi~~~Gs----------tGE~~~Ls~~Er~~~~~~~~~~~--------~-~~~~vi~gv~~~ 77 (285)
T TIGR00674 17 DFAALEKLIDFQIENGTDAIVVVGT----------TGESPTLSHEEHKKVIEFVVDLV--------N-GRVPVIAGTGSN 77 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc----------CcccccCCHHHHHHHHHHHHHHh--------C-CCCeEEEeCCCc
Confidence 667777777775 558999987433 33334334444456666555531 1 2567776665
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih~ 223 (240)
..++++.++.+++ |+|++.+..
T Consensus 78 s~~~~i~~a~~a~~~Gad~v~v~p 101 (285)
T TIGR00674 78 ATEEAISLTKFAEDVGADGFLVVT 101 (285)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcC
Confidence 5678889999999 999999854
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea | Back alignment and domain information |
|---|
Probab=88.00 E-value=3.8 Score=36.07 Aligned_cols=80 Identities=6% Similarity=-0.052 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEe-ee
Q psy7344 124 NDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCP-QM 201 (240)
Q Consensus 124 ~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK-~r 201 (240)
-|.+.+.+.++.+ +.|++||-++-+ +|....-..+.-.++++.+.+.. .++.+.+- ..
T Consensus 17 iD~~~~~~li~~l~~~Gv~Gl~~~Gs----------tGE~~~Lt~eEr~~l~~~~~~~~----------~~vi~gvg~~~ 76 (279)
T cd00953 17 IDKEKFKKHCENLISKGIDYVFVAGT----------TGLGPSLSFQEKLELLKAYSDIT----------DKVIFQVGSLN 76 (279)
T ss_pred cCHHHHHHHHHHHHHcCCcEEEEccc----------CCCcccCCHHHHHHHHHHHHHHc----------CCEEEEeCcCC
Confidence 3778888888876 458999988544 45555556666667777666651 12222222 12
Q ss_pred hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 ~~~~~~~~~~l~~-G~~~itih~ 223 (240)
..+++++++.+++ |+|++.+..
T Consensus 77 ~~~ai~~a~~a~~~Gad~v~v~~ 99 (279)
T cd00953 77 LEESIELARAAKSFGIYAIASLP 99 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeC
Confidence 6788999999999 999999844
|
This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=87.98 E-value=5.5 Score=36.78 Aligned_cols=96 Identities=15% Similarity=-0.006 Sum_probs=60.8
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccC---CHHHHHHHHH
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD---DWPLLTNLVY 175 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~---~p~~i~~iv~ 175 (240)
+|+-|..+.... +.|++++=. -+..++.+.++.|+|+|++.-. + |.++-. -.+.+.++++
T Consensus 212 tW~di~wlr~~~---~~PiivKgV----~~~~dA~~a~~~Gvd~I~Vsnh--------G--Grqld~~~~t~~~L~ei~~ 274 (367)
T PLN02493 212 SWKDVQWLQTIT---KLPILVKGV----LTGEDARIAIQAGAAGIIVSNH--------G--ARQLDYVPATISALEEVVK 274 (367)
T ss_pred CHHHHHHHHhcc---CCCEEeecC----CCHHHHHHHHHcCCCEEEECCC--------C--CCCCCCchhHHHHHHHHHH
Confidence 588777776543 478988722 2344566667779999997433 2 122211 1233333433
Q ss_pred HhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 176 SPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 176 ~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
++. .++||.+-.-+.+-.+++++|..||+++-+ ||.
T Consensus 275 av~-------------~~~~vi~dGGIr~G~Dv~KALALGA~aV~i-Gr~ 310 (367)
T PLN02493 275 ATQ-------------GRIPVFLDGGVRRGTDVFKALALGASGIFI-GRP 310 (367)
T ss_pred HhC-------------CCCeEEEeCCcCcHHHHHHHHHcCCCEEEE-cHH
Confidence 321 246777777777888999999889999988 764
|
|
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=87.97 E-value=4.6 Score=36.55 Aligned_cols=121 Identities=10% Similarity=-0.103 Sum_probs=66.6
Q ss_pred ccccCCCccccc-cCchhhhhhhhcccceee--eCChhhHHHhhhcccC--CCCceeEEeecC--CHHHHHHHHHHH-cc
Q psy7344 67 FIAEPHCDGIDI-NIGCPQMVAKRGHYGAYL--QDDWPLLTELGFKTRS--HMCGHSLMFCGN--DSKNLTEAAKLA-EP 138 (240)
Q Consensus 67 ~~lap~~~~~dl-~~gC~~~i~~~g~~ga~l--~~d~eli~~i~~~~~~--~~~pvivqi~g~--d~~~~~~aa~~l-e~ 138 (240)
.+.+||....+- .+ ...++..|+.|..- ...++.+++...+++. .+.|+-|+|... ++ ...+..+.+ +.
T Consensus 5 IiqgpM~~vs~~~~L--aaAVS~AGgLG~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~-~~~~~l~vi~e~ 81 (320)
T cd04743 5 IVQGPMTRVSDVAEF--AVAVAEGGGLPFIALALMRGEQVKALLEETAELLGDKPWGVGILGFVDTE-LRAAQLAVVRAI 81 (320)
T ss_pred EECCCcCCCCCcHHH--HHHHHhCCccccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCc-chHHHHHHHHhc
Confidence 456788776652 33 24566666655411 2245655554433333 257999988542 32 223444444 55
Q ss_pred CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCC
Q psy7344 139 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWP 217 (240)
Q Consensus 139 ~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~ 217 (240)
.+..|-+..| +|+.+ +.+++. .+.|.... .....++.+++ |+|
T Consensus 82 ~v~~V~~~~G-----------------~P~~~----~~lk~~------------Gi~v~~~v---~s~~~A~~a~~~GaD 125 (320)
T cd04743 82 KPTFALIAGG-----------------RPDQA----RALEAI------------GISTYLHV---PSPGLLKQFLENGAR 125 (320)
T ss_pred CCcEEEEcCC-----------------ChHHH----HHHHHC------------CCEEEEEe---CCHHHHHHHHHcCCC
Confidence 6666666544 34333 333332 33444322 34456788888 999
Q ss_pred eEEEecccc
Q psy7344 218 LLTELGKMA 226 (240)
Q Consensus 218 ~itih~R~~ 226 (240)
.|.+.|.-.
T Consensus 126 ~vVaqG~EA 134 (320)
T cd04743 126 KFIFEGREC 134 (320)
T ss_pred EEEEecCcC
Confidence 999987654
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=87.96 E-value=3.4 Score=36.20 Aligned_cols=80 Identities=8% Similarity=-0.095 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+. .|+++|-++-. +|....-..+.-.++++.+.+.. . .++||.+=+.
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v~Gs----------tGE~~~lt~~Er~~l~~~~~~~~--------~-~~~~vi~gv~~~ 79 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVVCGT----------TGESPTLSDEEHEAVIEAVVEAV--------N-GRVPVIAGTGSN 79 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCC----------CcchhhCCHHHHHHHHHHHHHHh--------C-CCCcEEeccCCc
Confidence 6677777777764 58999988633 34444456666667777666651 1 2467766665
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih~ 223 (240)
..+++++++.+++ |+|++.+..
T Consensus 80 ~~~~~~~~a~~a~~~G~d~v~~~~ 103 (284)
T cd00950 80 NTAEAIELTKRAEKAGADAALVVT 103 (284)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcc
Confidence 5678899999999 999998853
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.95 E-value=3.9 Score=36.19 Aligned_cols=80 Identities=10% Similarity=0.117 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHH-c-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee-
Q psy7344 125 DSKNLTEAAKLA-E-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r- 201 (240)
|.+.+.+.++.+ + .|++||-++-. +|....-..+.-.++++.+.+.+ . -++||.+-+-
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v~Gs----------tGE~~~Ls~eEr~~~~~~~~~~~--------~-~~~~viagvg~ 82 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYVGGS----------TGEAFLLSTEEKKQVLEIVAEEA--------K-GKVKLIAQVGS 82 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECCC----------ccccccCCHHHHHHHHHHHHHHh--------C-CCCCEEecCCC
Confidence 677788877776 5 58899987543 34433334455556666555541 1 2568877765
Q ss_pred --hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 --VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 --~~~~~~~~~~l~~-G~~~itih~ 223 (240)
+.+++++++.+++ |+|++.+..
T Consensus 83 ~~t~~ai~~a~~a~~~Gad~v~v~~ 107 (293)
T PRK04147 83 VNTAEAQELAKYATELGYDAISAVT 107 (293)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 5678899999999 999999864
|
|
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.93 E-value=3.9 Score=37.91 Aligned_cols=96 Identities=14% Similarity=0.021 Sum_probs=60.6
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccc---cCCHHHHHHHHH
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL---QDDWPLLTNLVY 175 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l---~~~p~~i~~iv~ 175 (240)
+|+-|+.+.... +.|++++ .+-+..++.+.++.|+|+|++.- |+| .++ ..-.+.+.++.+
T Consensus 233 tW~di~~lr~~~---~~pvivK----gV~s~~dA~~a~~~Gvd~I~Vs~--------hGG--r~~d~~~~t~~~L~~i~~ 295 (381)
T PRK11197 233 SWKDLEWIRDFW---DGPMVIK----GILDPEDARDAVRFGADGIVVSN--------HGG--RQLDGVLSSARALPAIAD 295 (381)
T ss_pred CHHHHHHHHHhC---CCCEEEE----ecCCHHHHHHHHhCCCCEEEECC--------CCC--CCCCCcccHHHHHHHHHH
Confidence 477777776543 3688776 22444466667778999999742 222 222 222344444444
Q ss_pred HhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 176 SPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 176 ~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
++. .++||.+-.-+.+-.++++.|..||+++.+ ||-
T Consensus 296 a~~-------------~~~~vi~dGGIr~g~Di~KALaLGA~~V~i-Gr~ 331 (381)
T PRK11197 296 AVK-------------GDITILADSGIRNGLDVVRMIALGADTVLL-GRA 331 (381)
T ss_pred Hhc-------------CCCeEEeeCCcCcHHHHHHHHHcCcCceeE-hHH
Confidence 321 246777777777888999999889999988 653
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=87.85 E-value=2.8 Score=35.79 Aligned_cols=75 Identities=21% Similarity=0.045 Sum_probs=47.7
Q ss_pred HHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHH
Q psy7344 128 NLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRG 206 (240)
Q Consensus 128 ~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~ 206 (240)
+..++++.+++ |++.|-+.- .. +.|.. -..+++.++++.+. .++||.+-..+.+..
T Consensus 150 ~~~~~~~~~~~~G~~~i~~~~-----~~-~~g~~--~g~~~~~i~~i~~~---------------~~iPvia~GGI~~~~ 206 (241)
T PRK13585 150 TPVEAAKRFEELGAGSILFTN-----VD-VEGLL--EGVNTEPVKELVDS---------------VDIPVIASGGVTTLD 206 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEe-----ec-CCCCc--CCCCHHHHHHHHHh---------------CCCCEEEeCCCCCHH
Confidence 45667777755 777764321 11 11111 23688888888775 456777777777777
Q ss_pred HHHHHHhC-CCCeEEEeccccc
Q psy7344 207 HYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 207 ~~~~~l~~-G~~~itih~R~~~ 227 (240)
++.+ +.+ |++++.+ |+.-.
T Consensus 207 di~~-~~~~Ga~gv~v-gsa~~ 226 (241)
T PRK13585 207 DLRA-LKEAGAAGVVV-GSALY 226 (241)
T ss_pred HHHH-HHHcCCCEEEE-EHHHh
Confidence 7666 566 9999998 65543
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=87.82 E-value=4.2 Score=35.13 Aligned_cols=74 Identities=12% Similarity=0.030 Sum_probs=49.1
Q ss_pred HHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHH
Q psy7344 128 NLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRG 206 (240)
Q Consensus 128 ~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~ 206 (240)
+..+.++.+++ +++.|=+.-- .+.|+.. ..|++.++++.+. .++||.+-..+.+..
T Consensus 154 ~~~~~~~~~~~~g~~~ii~~~i------~~~g~~~--g~d~~~i~~~~~~---------------~~ipvia~GGv~s~~ 210 (253)
T PRK02083 154 DAVEWAKEVEELGAGEILLTSM------DRDGTKN--GYDLELTRAVSDA---------------VNVPVIASGGAGNLE 210 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEcCC------cCCCCCC--CcCHHHHHHHHhh---------------CCCCEEEECCCCCHH
Confidence 45566666644 7777654211 0112222 3589988888764 456788877788888
Q ss_pred HHHHHHhC-CCCeEEEeccc
Q psy7344 207 HYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 207 ~~~~~l~~-G~~~itih~R~ 225 (240)
++.+.++. |++++.+ |+.
T Consensus 211 d~~~~~~~~G~~gviv-g~a 229 (253)
T PRK02083 211 HFVEAFTEGGADAALA-ASI 229 (253)
T ss_pred HHHHHHHhCCccEEeE-hHH
Confidence 99999988 9999987 443
|
|
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=87.81 E-value=4.3 Score=37.65 Aligned_cols=96 Identities=16% Similarity=0.068 Sum_probs=62.0
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccc---cCCHHHHHHHHH
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL---QDDWPLLTNLVY 175 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l---~~~p~~i~~iv~ 175 (240)
+|+-|+.+.... +.|++++ .+.+..++.+.++.|+|+|.+.-+ +| ..+ ..--+.+.++.+
T Consensus 241 tW~~i~~lr~~~---~~pvivK----gV~~~~dA~~a~~~G~d~I~vsnh--------GG--r~~d~~~~t~~~L~ei~~ 303 (383)
T cd03332 241 TWEDLAFLREWT---DLPIVLK----GILHPDDARRAVEAGVDGVVVSNH--------GG--RQVDGSIAALDALPEIVE 303 (383)
T ss_pred CHHHHHHHHHhc---CCCEEEe----cCCCHHHHHHHHHCCCCEEEEcCC--------CC--cCCCCCcCHHHHHHHHHH
Confidence 588888876654 3688887 223344566666779999998522 22 122 222334444444
Q ss_pred HhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 176 SPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 176 ~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
++. .++||.+-.-+.+-.++++.|..||+++.+ ||.
T Consensus 304 ~~~-------------~~~~vi~dGGIr~G~Dv~KALaLGA~~v~i-Gr~ 339 (383)
T cd03332 304 AVG-------------DRLTVLFDSGVRTGADIMKALALGAKAVLI-GRP 339 (383)
T ss_pred Hhc-------------CCCeEEEeCCcCcHHHHHHHHHcCCCEEEE-cHH
Confidence 432 246777777777788999999889999988 664
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.72 E-value=2.6 Score=38.84 Aligned_cols=94 Identities=13% Similarity=-0.002 Sum_probs=61.0
Q ss_pred CCceeEEeec--------CCHHHHHHHHHHHcc-C-CCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhcccc
Q psy7344 114 MCGHSLMFCG--------NDSKNLTEAAKLAEP-H-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFV 183 (240)
Q Consensus 114 ~~pvivqi~g--------~d~~~~~~aa~~le~-~-~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~ 183 (240)
+.|+.+.|.. .+.+++.++++.|++ | +|.|++-.|-.... +......+.........++..
T Consensus 216 ~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~------~~~~~~~~~~~~~~a~~i~~~--- 286 (363)
T COG1902 216 DFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERG------GTITVSGPGYQVEFAARIKKA--- 286 (363)
T ss_pred CceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCC------CCccccccchhHHHHHHHHHh---
Confidence 4577776643 356688889999976 7 79999877633210 000011133444445555555
Q ss_pred ccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 184 i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
..+|+.+-.++.+....-+.|++ .+|.|.+ ||-
T Consensus 287 --------~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~-gR~ 320 (363)
T COG1902 287 --------VRIPVIAVGGINDPEQAEEILASGRADLVAM-GRP 320 (363)
T ss_pred --------cCCCEEEeCCCCCHHHHHHHHHcCCCCEEEe-chh
Confidence 56788888887777777788888 6999998 774
|
|
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=87.65 E-value=4.6 Score=34.31 Aligned_cols=85 Identities=8% Similarity=-0.072 Sum_probs=53.7
Q ss_pred CCCceeEEeec--------CCHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhcccc
Q psy7344 113 HMCGHSLMFCG--------NDSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFV 183 (240)
Q Consensus 113 ~~~pvivqi~g--------~d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~ 183 (240)
...|+++.... .+.+....+++... .|+|.|-++.. .+++.++++++.
T Consensus 121 ~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~----------------~~~~~~~~i~~~------- 177 (235)
T cd00958 121 YGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYT----------------GDAESFKEVVEG------- 177 (235)
T ss_pred cCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCC----------------CCHHHHHHHHhc-------
Confidence 35678776533 23455566566554 48999888421 267778777764
Q ss_pred ccCCCCCCCCeeeEE----eee-hhcHHHHHHHHhC-CCCeEEEeccccccc
Q psy7344 184 IAEPHCDGNDINIGC----PQM-VAKRGHYGAYLQD-DWPLLTELGKMAMLV 229 (240)
Q Consensus 184 i~~~~~~~~~~pvsv----K~r-~~~~~~~~~~l~~-G~~~itih~R~~~~~ 229 (240)
..+||.+ +.+ .+++.+.++.+.+ |++++.+ ||.-.|.
T Consensus 178 --------~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~v-g~~i~~~ 220 (235)
T cd00958 178 --------CPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAV-GRNIFQR 220 (235)
T ss_pred --------CCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEe-chhhhcC
Confidence 3445533 222 3446677777888 9999987 8887764
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=87.65 E-value=1.2 Score=38.53 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=28.5
Q ss_pred ceeEEeecCCHHHHHHHHHHHccCCCEEEecCC
Q psy7344 116 GHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIG 148 (240)
Q Consensus 116 pvivqi~g~d~~~~~~aa~~le~~~d~Idin~g 148 (240)
|+ ++|..+.+.+..++|-+++.|+|||=++.|
T Consensus 208 PV-vnFAAGGvATPADAALMM~LGadGVFVGSG 239 (296)
T COG0214 208 PV-VNFAAGGVATPADAALMMQLGADGVFVGSG 239 (296)
T ss_pred Ce-EeecccCcCChhHHHHHHHhCCCeEEeccc
Confidence 54 588888899999999999999999999888
|
|
| >PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=87.64 E-value=3.5 Score=35.30 Aligned_cols=82 Identities=6% Similarity=-0.075 Sum_probs=49.9
Q ss_pred ceeEEeecCCHHHHHHHHHHHcc---CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 116 GHSLMFCGNDSKNLTEAAKLAEP---HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 116 pvivqi~g~d~~~~~~aa~~le~---~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
++++.+ |..+..++.+.+++ ..++++++.+. -. .+ -++.++.+.+. . .
T Consensus 4 ~lilAl---D~~~~~~~l~~~~~~~~~~~~ikvg~~~--f~----~~------G~~~i~~l~~~---~-----------~ 54 (230)
T PRK00230 4 RLIVAL---DFPSKEEALAFLDQLDPAVLFVKVGMEL--FT----AG------GPQFVRELKQR---G-----------F 54 (230)
T ss_pred CeEEEc---CCCCHHHHHHHHHhcCCcccEEEEcHHH--HH----hc------CHHHHHHHHhc---C-----------C
Confidence 455543 54444555555543 46889988762 21 11 13334444432 2 5
Q ss_pred CeeeEEeee--hhcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 193 DINIGCPQM--VAKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 193 ~~pvsvK~r--~~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
.+++-+|+- ......+++.+.+ |+|.+|+|+-..
T Consensus 55 ~i~~D~Kl~Di~~t~~~~i~~~~~~gad~itvH~~ag 91 (230)
T PRK00230 55 KVFLDLKLHDIPNTVAKAVRALAKLGVDMVNVHASGG 91 (230)
T ss_pred CEEEEeehhhccccHHHHHHHHHHcCCCEEEEcccCC
Confidence 678889984 4555677888888 999999998553
|
|
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=87.48 E-value=3.5 Score=35.47 Aligned_cols=83 Identities=11% Similarity=-0.041 Sum_probs=59.7
Q ss_pred CceeEEeecCCHHHHHHHHHHHcc-CCCE--EEecCC--CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCC
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLAEP-HCDG--IDINIG--CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHC 189 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~le~-~~d~--Idin~g--CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~ 189 (240)
.++.++|...|...+.+-.+.+++ ++|. +|+==| +|+. .--|+.++.+ +
T Consensus 13 ~~I~pSil~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNi-----------tfGp~~i~~i----~----------- 66 (228)
T PRK08091 13 QPISVGILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPFF-----------TVGAIAIKQF----P----------- 66 (228)
T ss_pred CeEEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCcc-----------ccCHHHHHHh----C-----------
Confidence 467889988999999988888876 6664 444222 2332 1245554444 2
Q ss_pred CCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 190 DGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 190 ~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.+.|+.+-+.+.+..++.+.+.+ |+|.||+|.-.
T Consensus 67 --~~~~~DvHLMv~~P~~~i~~~~~aGad~It~H~Ea 101 (228)
T PRK08091 67 --THCFKDVHLMVRDQFEVAKACVAAGADIVTLQVEQ 101 (228)
T ss_pred --CCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccC
Confidence 23488898889999999999999 99999999874
|
|
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=87.47 E-value=4.9 Score=35.47 Aligned_cols=80 Identities=8% Similarity=0.051 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHH-cc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee-
Q psy7344 125 DSKNLTEAAKLA-EP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r- 201 (240)
|.+.+.+.++.+ +. |++||-++-. +|....-..+.-.++++.+.+.+ . .++||.+-+-
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~~Gs----------tGE~~~Lt~~Er~~~~~~~~~~~--------~-~~~~viagv~~ 79 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYVNGS----------TGEGFLLSVEERKQIAEIVAEAA--------K-GKVTLIAHVGS 79 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECcC----------CcCcccCCHHHHHHHHHHHHHHh--------C-CCCeEEeccCC
Confidence 677777777766 56 7899887543 34444334555556666655541 1 2567777654
Q ss_pred --hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 --VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 --~~~~~~~~~~l~~-G~~~itih~ 223 (240)
..+++++++.+++ |+|++.+..
T Consensus 80 ~~~~~ai~~a~~a~~~Gad~v~~~~ 104 (288)
T cd00954 80 LNLKESQELAKHAEELGYDAISAIT 104 (288)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 5678999999999 999998743
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=87.38 E-value=4.3 Score=35.69 Aligned_cols=80 Identities=11% Similarity=0.001 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++++-++-. +|....-..+.-.++++.+.+.. ..++||.+-+-
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~Gs----------tGE~~~Lt~~Er~~l~~~~~~~~---------~~~~~vi~gv~~~ 80 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLGS----------TGEFYSLTDEERKELLEIVVEAA---------AGRVPVIAGVGAN 80 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESST----------TTTGGGS-HHHHHHHHHHHHHHH---------TTSSEEEEEEESS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCC----------CcccccCCHHHHHHHHHHHHHHc---------cCceEEEecCcch
Confidence 667777888876 458999988544 23333334444456666655531 03678887766
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih~ 223 (240)
..+++++++.+++ |+|++.+..
T Consensus 81 st~~~i~~a~~a~~~Gad~v~v~~ 104 (289)
T PF00701_consen 81 STEEAIELARHAQDAGADAVLVIP 104 (289)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEEE
T ss_pred hHHHHHHHHHHHhhcCceEEEEec
Confidence 5678999999999 999998753
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=87.26 E-value=2.4 Score=35.99 Aligned_cols=85 Identities=14% Similarity=0.071 Sum_probs=49.3
Q ss_pred ceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 116 GHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 116 pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++++-|--.|.++..+.++.+....+.+.+|.- .-. ..-++.++++.+ .. .+.+
T Consensus 5 ~l~vALD~~~~~~a~~l~~~l~~~v~~~kvG~~--l~~----------~~G~~~i~~lk~----~~----------~~~~ 58 (216)
T PRK13306 5 LLQIALDNQDLESAIEDAKKVAEEVDIIEVGTI--LLL----------AEGMKAVRVLRA----LY----------PDKI 58 (216)
T ss_pred cEEEEecCCCHHHHHHHHHHccccCCEEEEChH--HHH----------HhCHHHHHHHHH----HC----------CCCE
Confidence 355555345677777777777777788888654 211 011344444443 21 3457
Q ss_pred eEEeeehhcHHHH-HHHHhC-CCCeEEEecccc
Q psy7344 196 IGCPQMVAKRGHY-GAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 196 vsvK~r~~~~~~~-~~~l~~-G~~~itih~R~~ 226 (240)
|.+-+.+.+.-.+ ++.+.+ |+|.+|+|+-..
T Consensus 59 v~~DLK~~Di~~~v~~~~~~~Gad~vTvH~~a~ 91 (216)
T PRK13306 59 IVADTKIADAGKILAKMAFEAGADWVTVICAAH 91 (216)
T ss_pred EEEEEeecCCcHHHHHHHHHCCCCEEEEeCCCC
Confidence 7766664333222 223667 999999999653
|
|
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=87.23 E-value=5.3 Score=34.15 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=45.5
Q ss_pred HHHHHHHHccCCCEEE--ecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh----
Q psy7344 129 LTEAAKLAEPHCDGID--INIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV---- 202 (240)
Q Consensus 129 ~~~aa~~le~~~d~Id--in~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~---- 202 (240)
..++.+.+++|++.|| +|.|.+ .-.+|+.+.+-+..+++. . .|+.+|+-+
T Consensus 77 ~~e~~~Ai~~GA~EiD~Vin~~~~------------~~g~~~~v~~ei~~v~~~-----------~-~~~~lKvIlEt~~ 132 (221)
T PRK00507 77 AFEAKDAIANGADEIDMVINIGAL------------KSGDWDAVEADIRAVVEA-----------A-GGAVLKVIIETCL 132 (221)
T ss_pred HHHHHHHHHcCCceEeeeccHHHh------------cCCCHHHHHHHHHHHHHh-----------c-CCceEEEEeecCc
Confidence 3455666678998888 455532 224788887777777765 2 256677732
Q ss_pred ---hcHHHHHHHHhC-CCCeEEE
Q psy7344 203 ---AKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 203 ---~~~~~~~~~l~~-G~~~iti 221 (240)
+...+.++.+.+ |+|+|.-
T Consensus 133 L~~e~i~~a~~~~~~agadfIKT 155 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKT 155 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEc
Confidence 335677788888 9998754
|
|
| >TIGR00284 dihydropteroate synthase-related protein | Back alignment and domain information |
|---|
Probab=87.14 E-value=2.2 Score=40.97 Aligned_cols=68 Identities=13% Similarity=0.069 Sum_probs=46.4
Q ss_pred HHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh---------
Q psy7344 132 AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV--------- 202 (240)
Q Consensus 132 aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~--------- 202 (240)
+.+++++|+|.||||++-. -.+++.+..+++.+++. .+.|||+-..-
T Consensus 171 A~~~~~~GADIIDIG~~st-------------~p~~~~v~~~V~~l~~~-----------~~~pISIDT~~~~v~eaAL~ 226 (499)
T TIGR00284 171 AARMERDGADMVALGTGSF-------------DDDPDVVKEKVKTALDA-----------LDSPVIADTPTLDELYEALK 226 (499)
T ss_pred HHHHHHCCCCEEEECCCcC-------------CCcHHHHHHHHHHHHhh-----------CCCcEEEeCCCHHHHHHHHH
Confidence 4455677999999998721 02555788888888776 56788887651
Q ss_pred -----------hcHHHHHHHHhC-CCCeEEEec
Q psy7344 203 -----------AKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 203 -----------~~~~~~~~~l~~-G~~~itih~ 223 (240)
....++++.+.+ |+..|.+|.
T Consensus 227 aGAdiINsVs~~~~d~~~~l~a~~g~~vVlm~~ 259 (499)
T TIGR00284 227 AGASGVIMPDVENAVELASEKKLPEDAFVVVPG 259 (499)
T ss_pred cCCCEEEECCccchhHHHHHHHHcCCeEEEEcC
Confidence 122355565677 888888885
|
This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=86.95 E-value=2.2 Score=38.91 Aligned_cols=87 Identities=10% Similarity=0.038 Sum_probs=57.1
Q ss_pred ecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee
Q psy7344 122 CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM 201 (240)
Q Consensus 122 ~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r 201 (240)
.++++.+.+-+..+++.|+|+|-++.|.-+..+.+.-+|... .....+.++.++.++ ..+||.+-.-
T Consensus 155 IaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~-PQltAV~~~a~~a~~------------~gvpiIADGG 221 (346)
T PRK05096 155 CAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGY-PQLSAVIECADAAHG------------LGGQIVSDGG 221 (346)
T ss_pred EEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccCh-hHHHHHHHHHHHHHH------------cCCCEEecCC
Confidence 345555555455555679999999999444444444444432 344555555555443 3567777777
Q ss_pred hhcHHHHHHHHhCCCCeEEE
Q psy7344 202 VAKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 202 ~~~~~~~~~~l~~G~~~iti 221 (240)
+...-+++++|..|||++.+
T Consensus 222 i~~sGDI~KAlaaGAd~VMl 241 (346)
T PRK05096 222 CTVPGDVAKAFGGGADFVML 241 (346)
T ss_pred cccccHHHHHHHcCCCEEEe
Confidence 77778899999889999987
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=86.89 E-value=3.5 Score=33.31 Aligned_cols=67 Identities=6% Similarity=-0.144 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh-
Q psy7344 125 DSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV- 202 (240)
Q Consensus 125 d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~- 202 (240)
|.+.+.+.++.+. .|+++|.++. +.++.+.+.+.. .++|+.+++..
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------------------~~i~~~~~~~~~------------~~~~v~~~v~~~ 58 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------------------GYVRLAADALAG------------SDVPVIVVVGFP 58 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------------------HHHHHHHHHhCC------------CCCeEEEEecCC
Confidence 7778888888774 4788888853 344444443221 14688888873
Q ss_pred ------hcHHHHHHHHhC-CCCeEEEec
Q psy7344 203 ------AKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 203 ------~~~~~~~~~l~~-G~~~itih~ 223 (240)
+.+.+.++.+.+ |+|++.++.
T Consensus 59 ~~~~~~~~~~~~a~~a~~~Gad~i~v~~ 86 (201)
T cd00945 59 TGLTTTEVKVAEVEEAIDLGADEIDVVI 86 (201)
T ss_pred CCCCcHHHHHHHHHHHHHcCCCEEEEec
Confidence 346788888999 999999863
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Probab=86.70 E-value=1.8 Score=40.27 Aligned_cols=51 Identities=16% Similarity=0.086 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHhhhccccccCCCCCCCC-eeeEEeeehh-cHHHHHHHHhC-CCCeEEEecccc
Q psy7344 165 DDWPLLTNLVYSPNMVHFVIAEPHCDGND-INIGCPQMVA-KRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 165 ~~p~~i~~iv~~~~~~~~~i~~~~~~~~~-~pvsvK~r~~-~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
.+++.+.++++.+++. .. +||.+|+-.. +..++++.++. |+|+|+|-|.-.
T Consensus 196 ~~~~~l~~~I~~lr~~-----------~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~G 249 (392)
T cd02808 196 YSIEDLAQLIEDLREA-----------TGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEG 249 (392)
T ss_pred CCHHHHHHHHHHHHHh-----------CCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCC
Confidence 5777888999999997 55 8999999944 67789999999 899999988744
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. |
| >PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder | Back alignment and domain information |
|---|
Probab=86.61 E-value=1.5 Score=37.11 Aligned_cols=82 Identities=12% Similarity=0.070 Sum_probs=51.2
Q ss_pred HHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhh-ccccccCCCCCCCCeeeEEeeeh-------
Q psy7344 131 EAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM-VHFVIAEPHCDGNDINIGCPQMV------- 202 (240)
Q Consensus 131 ~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~-~~~~i~~~~~~~~~~pvsvK~r~------- 202 (240)
++.+++++|+|.||||.+--.+ +......-..++.+..+++.+++ . .++|+|+-..-
T Consensus 24 ~a~~~~~~GAdiIDIg~~st~p----~~~~v~~~eE~~rl~~~l~~i~~~~-----------~~~plSIDT~~~~v~~~a 88 (210)
T PF00809_consen 24 RAREQVEAGADIIDIGAESTRP----GATPVSEEEEMERLVPVLQAIREEN-----------PDVPLSIDTFNPEVAEAA 88 (210)
T ss_dssp HHHHHHHTT-SEEEEESSTSST----TSSSSHHHHHHHHHHHHHHHHHHHH-----------TTSEEEEEESSHHHHHHH
T ss_pred HHHHHHHhcCCEEEecccccCC----CCCcCCHHHHHHHHHHHHHHHhccC-----------CCeEEEEECCCHHHHHHH
Confidence 4555667899999999883111 10000012355666666666665 3 57899988771
Q ss_pred --------------hcHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 203 --------------AKRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 203 --------------~~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
....++.+.+.+ |+..|.+|.+...
T Consensus 89 L~~g~~~ind~~~~~~~~~~~~l~a~~~~~vV~m~~~~~~ 128 (210)
T PF00809_consen 89 LKAGADIINDISGFEDDPEMLPLAAEYGAPVVLMHSDGNP 128 (210)
T ss_dssp HHHTSSEEEETTTTSSSTTHHHHHHHHTSEEEEESESSET
T ss_pred HHcCcceEEecccccccchhhhhhhcCCCEEEEEeccccc
Confidence 113457778888 9999999998433
|
It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B .... |
| >PRK13813 orotidine 5'-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=86.41 E-value=3.6 Score=34.51 Aligned_cols=83 Identities=7% Similarity=-0.041 Sum_probs=48.7
Q ss_pred ceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 116 GHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 116 pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++.+-+--.|.++..+.++.+....++|.+|..+ -. .--+ ++++.+++. ..++
T Consensus 5 ~l~~alD~~~~~~~~~~~~~~~~~~~~vk~g~~l--~~----------~~G~----~~v~~ir~~-----------~~i~ 57 (215)
T PRK13813 5 RIILALDVTDRERALKIAEELDDYVDAIKVGWPL--VL----------ASGL----GIIEELKRY-----------APVI 57 (215)
T ss_pred CEEEEeCCCCHHHHHHHHHhccccCCEEEEcHHH--HH----------hhCH----HHHHHHHhc-----------CCEE
Confidence 3544442334444444444443446778776543 10 0123 355555554 5678
Q ss_pred eEEeee-hhcH-HHHHHHHhC-CCCeEEEeccc
Q psy7344 196 IGCPQM-VAKR-GHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 196 vsvK~r-~~~~-~~~~~~l~~-G~~~itih~R~ 225 (240)
+-+|+- +.++ ..+++.+.+ |+|.+|+|.-.
T Consensus 58 ~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e~ 90 (215)
T PRK13813 58 ADLKVADIPNTNRLICEAVFEAGAWGIIVHGFT 90 (215)
T ss_pred EEeeccccHHHHHHHHHHHHhCCCCEEEEcCcC
Confidence 889987 4444 345578888 99999999986
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=86.39 E-value=4.3 Score=34.06 Aligned_cols=73 Identities=11% Similarity=-0.033 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhc
Q psy7344 126 SKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAK 204 (240)
Q Consensus 126 ~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~ 204 (240)
..++.+.|+..++ |+++|-++-= .. +....++.++.+.+ . .++||.+|..+.+
T Consensus 30 ~~~~~~~A~~~~~~GA~~l~v~~~-------~~----~~~g~~~~~~~i~~----~-----------v~iPi~~~~~i~~ 83 (217)
T cd00331 30 DFDPVEIAKAYEKAGAAAISVLTE-------PK----YFQGSLEDLRAVRE----A-----------VSLPVLRKDFIID 83 (217)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeC-------cc----ccCCCHHHHHHHHH----h-----------cCCCEEECCeecC
Confidence 3457788888866 7888855422 11 01234555544444 3 4679998865444
Q ss_pred HHHHHHHHhC-CCCeEEEeccc
Q psy7344 205 RGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 205 ~~~~~~~l~~-G~~~itih~R~ 225 (240)
. +.++.+.+ |+|++++-.+.
T Consensus 84 ~-~~v~~~~~~Gad~v~l~~~~ 104 (217)
T cd00331 84 P-YQIYEARAAGADAVLLIVAA 104 (217)
T ss_pred H-HHHHHHHHcCCCEEEEeecc
Confidence 4 46777777 99999975543
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=86.05 E-value=8 Score=33.68 Aligned_cols=74 Identities=15% Similarity=0.128 Sum_probs=47.7
Q ss_pred eecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEe
Q psy7344 121 FCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCP 199 (240)
Q Consensus 121 i~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK 199 (240)
.+..|+.. ++.+++ ||+.|+- .|-|. |.|.. +.+|+.++.+++. .++||.+-
T Consensus 129 yc~dd~~~----ar~l~~~G~~~vmP-lg~pI------Gsg~G-i~~~~~I~~I~e~---------------~~vpVI~e 181 (248)
T cd04728 129 YCTDDPVL----AKRLEDAGCAAVMP-LGSPI------GSGQG-LLNPYNLRIIIER---------------ADVPVIVD 181 (248)
T ss_pred EeCCCHHH----HHHHHHcCCCEeCC-CCcCC------CCCCC-CCCHHHHHHHHHh---------------CCCcEEEe
Confidence 45566653 333333 7777733 22222 23332 4679999877764 35688888
Q ss_pred eehhcHHHHHHHHhCCCCeEEE
Q psy7344 200 QMVAKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 200 ~r~~~~~~~~~~l~~G~~~iti 221 (240)
-++....+..++++.|+|++.+
T Consensus 182 gGI~tpeda~~AmelGAdgVlV 203 (248)
T cd04728 182 AGIGTPSDAAQAMELGADAVLL 203 (248)
T ss_pred CCCCCHHHHHHHHHcCCCEEEE
Confidence 8888888888888889999876
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=85.89 E-value=8.3 Score=35.24 Aligned_cols=100 Identities=18% Similarity=0.041 Sum_probs=62.4
Q ss_pred CChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccc---cCCHHHHHHHH
Q psy7344 98 DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL---QDDWPLLTNLV 174 (240)
Q Consensus 98 ~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l---~~~p~~i~~iv 174 (240)
..|+.++.+.... +.|++++-. .+ ..++.+..+.|+|+|.+.- |+| .++ ..-.+.+.++.
T Consensus 200 ~~~~~i~~l~~~~---~~PvivKgv-~~---~~dA~~a~~~G~d~I~vsn--------hgG--~~~d~~~~~~~~L~~i~ 262 (344)
T cd02922 200 LTWDDIKWLRKHT---KLPIVLKGV-QT---VEDAVLAAEYGVDGIVLSN--------HGG--RQLDTAPAPIEVLLEIR 262 (344)
T ss_pred CCHHHHHHHHHhc---CCcEEEEcC-CC---HHHHHHHHHcCCCEEEEEC--------CCc--ccCCCCCCHHHHHHHHH
Confidence 4578888876544 479998822 22 3344445566999999742 222 222 22234455555
Q ss_pred HHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 175 YSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 175 ~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
+.+.+. + .++||.+-.-+.+-.+.++.+..||+++.+ ||-
T Consensus 263 ~~~~~~------~----~~~~vi~~GGIr~G~Dv~kalaLGA~aV~i-G~~ 302 (344)
T cd02922 263 KHCPEV------F----DKIEVYVDGGVRRGTDVLKALCLGAKAVGL-GRP 302 (344)
T ss_pred HHHHHh------C----CCceEEEeCCCCCHHHHHHHHHcCCCEEEE-CHH
Confidence 543332 0 257888777788888999999889999988 653
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.88 E-value=4.7 Score=37.71 Aligned_cols=88 Identities=13% Similarity=0.025 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHccCCCEEEecCCCchh-hhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh
Q psy7344 124 NDSKNLTEAAKLAEPHCDGIDINIGCPQM-VAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV 202 (240)
Q Consensus 124 ~d~~~~~~aa~~le~~~d~Idin~gCP~~-~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~ 202 (240)
++..+...+..+++.|+|+|-++.| |-. .+.+.-.|.. ..+...+..+.+.+.. .++||.+-..+
T Consensus 200 g~V~T~e~a~~l~~aGaD~I~vG~g-~Gs~c~tr~~~g~g-~p~ltai~~v~~~~~~------------~~vpVIAdGGI 265 (404)
T PRK06843 200 GNIVTKEAALDLISVGADCLKVGIG-PGSICTTRIVAGVG-VPQITAICDVYEVCKN------------TNICIIADGGI 265 (404)
T ss_pred EecCCHHHHHHHHHcCCCEEEECCC-CCcCCcceeecCCC-CChHHHHHHHHHHHhh------------cCCeEEEeCCC
Confidence 5566666666667779999998876 321 1111111111 1344555555444332 46789888888
Q ss_pred hcHHHHHHHHhCCCCeEEEeccc
Q psy7344 203 AKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 203 ~~~~~~~~~l~~G~~~itih~R~ 225 (240)
.+..+++++|..||+++.+-.+.
T Consensus 266 ~~~~Di~KALalGA~aVmvGs~~ 288 (404)
T PRK06843 266 RFSGDVVKAIAAGADSVMIGNLF 288 (404)
T ss_pred CCHHHHHHHHHcCCCEEEEccee
Confidence 88999999999899999884433
|
|
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=85.87 E-value=2.7 Score=35.16 Aligned_cols=76 Identities=20% Similarity=0.123 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehh
Q psy7344 124 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVA 203 (240)
Q Consensus 124 ~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~ 203 (240)
.|..+++++....+.|+|.|-.-+.-=-..+ .+ -..|+++++++++ .++||.+-.|+.
T Consensus 97 ADist~ee~~~A~~~G~D~I~TTLsGYT~~t----~~--~~pD~~lv~~l~~----------------~~~pvIaEGri~ 154 (192)
T PF04131_consen 97 ADISTLEEAINAAELGFDIIGTTLSGYTPYT----KG--DGPDFELVRELVQ----------------ADVPVIAEGRIH 154 (192)
T ss_dssp EE-SSHHHHHHHHHTT-SEEE-TTTTSSTTS----TT--SSHHHHHHHHHHH----------------TTSEEEEESS--
T ss_pred eecCCHHHHHHHHHcCCCEEEcccccCCCCC----CC--CCCCHHHHHHHHh----------------CCCcEeecCCCC
Confidence 5667777777777789998876544211111 11 2467777777665 245899999998
Q ss_pred cHHHHHHHHhCCCCeEEE
Q psy7344 204 KRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 204 ~~~~~~~~l~~G~~~iti 221 (240)
+..+..+.++.|+.+++|
T Consensus 155 tpe~a~~al~~GA~aVVV 172 (192)
T PF04131_consen 155 TPEQAAKALELGAHAVVV 172 (192)
T ss_dssp SHHHHHHHHHTT-SEEEE
T ss_pred CHHHHHHHHhcCCeEEEE
Confidence 888888888889999998
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=85.54 E-value=3.7 Score=35.96 Aligned_cols=67 Identities=13% Similarity=0.062 Sum_probs=44.1
Q ss_pred HHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHH
Q psy7344 132 AAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGA 210 (240)
Q Consensus 132 aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~ 210 (240)
+++.+++ ||..||- .|.|. |.|.. +.||..++-|++. .++||.+---+....+.++
T Consensus 150 ~a~rLed~Gc~aVMP-lgsPI------GSg~G-l~n~~~l~~i~e~---------------~~vpVivdAGIgt~sDa~~ 206 (267)
T CHL00162 150 LAKHLEDIGCATVMP-LGSPI------GSGQG-LQNLLNLQIIIEN---------------AKIPVIIDAGIGTPSEASQ 206 (267)
T ss_pred HHHHHHHcCCeEEee-ccCcc------cCCCC-CCCHHHHHHHHHc---------------CCCcEEEeCCcCCHHHHHH
Confidence 3444444 5556654 33333 33333 5899999888875 4567777666777888888
Q ss_pred HHhCCCCeEEE
Q psy7344 211 YLQDDWPLLTE 221 (240)
Q Consensus 211 ~l~~G~~~iti 221 (240)
+.+.|+|++-+
T Consensus 207 AmElGaDgVL~ 217 (267)
T CHL00162 207 AMELGASGVLL 217 (267)
T ss_pred HHHcCCCEEee
Confidence 88879888755
|
|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=85.34 E-value=6.9 Score=33.72 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=31.4
Q ss_pred cccCCCCeecccCCCchhhhhccCCCcccCCCchhHH-----HHHHHhhcccCCCcee
Q psy7344 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT-----ELVVHFSWVSKNGPLF 62 (240)
Q Consensus 10 ~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~-----~iv~ql~~~~~~~p~~ 62 (240)
+.+. +|.|.||+-||-+.. .|....+.++.+. +++.++. +..+.|+.
T Consensus 27 l~~~-ad~iElgip~sdp~a----dG~~i~~~~~~a~~~g~~~~v~~vr-~~~~~Pl~ 78 (244)
T PRK13125 27 LVEL-VDILELGIPPKYPKY----DGPVIRKSHRKVKGLDIWPLLEEVR-KDVSVPII 78 (244)
T ss_pred HHhh-CCEEEECCCCCCCCC----CCHHHHHHHHHHHHcCcHHHHHHHh-ccCCCCEE
Confidence 4444 999999999998853 2444455555554 6788887 34567753
|
|
| >KOG0538|consensus | Back alignment and domain information |
|---|
Probab=85.08 E-value=6.8 Score=35.31 Aligned_cols=95 Identities=19% Similarity=0.058 Sum_probs=61.5
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEe-cCCCchhhhhcccccccc---cCCHHHHHHHH
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDI-NIGCPQMVAKRGHYGAYL---QDDWPLLTNLV 174 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idi-n~gCP~~~~~~~g~G~~l---~~~p~~i~~iv 174 (240)
+|+-|+.+...+ .-|++++ .+-..+++.+.+|.|++||=+ |-| |.+| .+.-+.+.+++
T Consensus 211 ~W~Di~wLr~~T---~LPIvvK----Gilt~eDA~~Ave~G~~GIIVSNHG-----------gRQlD~vpAtI~~L~Evv 272 (363)
T KOG0538|consen 211 SWKDIKWLRSIT---KLPIVVK----GVLTGEDARKAVEAGVAGIIVSNHG-----------GRQLDYVPATIEALPEVV 272 (363)
T ss_pred ChhhhHHHHhcC---cCCeEEE----eecccHHHHHHHHhCCceEEEeCCC-----------ccccCcccchHHHHHHHH
Confidence 466555544332 3688876 233334666777778888754 333 3344 45667777888
Q ss_pred HHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 175 YSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 175 ~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
+++.. ++||..-.-+..--+..++|.-||..|-+ ||-
T Consensus 273 ~aV~~-------------ri~V~lDGGVR~G~DVlKALALGAk~Vfi-GRP 309 (363)
T KOG0538|consen 273 KAVEG-------------RIPVFLDGGVRRGTDVLKALALGAKGVFI-GRP 309 (363)
T ss_pred HHhcC-------------ceEEEEecCcccchHHHHHHhcccceEEe-cCc
Confidence 77654 46777766666666788888889999987 774
|
|
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=85.01 E-value=1.7 Score=40.03 Aligned_cols=54 Identities=11% Similarity=-0.010 Sum_probs=36.6
Q ss_pred cCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHH-HHHHHhC-CCCeEEEeccccc
Q psy7344 164 QDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGH-YGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 164 ~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~-~~~~l~~-G~~~itih~R~~~ 227 (240)
..+++.+.+.++.+++.. ...||++|+-.....+ .+..+.+ |+|.|||-|.-..
T Consensus 184 i~s~edl~~~I~~Lr~~~----------~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GG 239 (368)
T PF01645_consen 184 IYSIEDLAQLIEELRELN----------PGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGG 239 (368)
T ss_dssp -SSHHHHHHHHHHHHHH-----------TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT--
T ss_pred cCCHHHHHHHHHHHHhhC----------CCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCC
Confidence 467888899999999971 2789999999544333 3343667 9999999887644
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=84.68 E-value=7.8 Score=32.68 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=49.7
Q ss_pred EEeecC-CHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeE
Q psy7344 119 LMFCGN-DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIG 197 (240)
Q Consensus 119 vqi~g~-d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvs 197 (240)
++|+|- ++++... ..+.|+|.+=+.+--.++ + --+++.+++|.+.+...+ ..+-|+
T Consensus 3 vKICGit~~eda~~---~~~~GaD~iGfIf~~~Sp-----R-----~V~~~~a~~i~~~~~~~~----------~~VgVf 59 (207)
T PRK13958 3 LKFCGFTTIKDVTA---ASQLPIDAIGFIHYEKSK-----R-----HQTITQIKKLASAVPNHI----------DKVCVV 59 (207)
T ss_pred EEEcCCCcHHHHHH---HHHcCCCEEEEecCCCCc-----c-----cCCHHHHHHHHHhCCCCC----------CEEEEE
Confidence 678774 5554333 334578887775431122 1 158999999998765431 223344
Q ss_pred EeeehhcHHHHHHHHhC-CCCeEEEecc
Q psy7344 198 CPQMVAKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 198 vK~r~~~~~~~~~~l~~-G~~~itih~R 224 (240)
+. .+..++.+.++. |.|.|.+||=
T Consensus 60 ~~---~~~~~i~~~~~~~~~d~vQLHG~ 84 (207)
T PRK13958 60 VN---PDLTTIEHILSNTSINTIQLHGT 84 (207)
T ss_pred eC---CCHHHHHHHHHhCCCCEEEECCC
Confidence 42 345667778888 9999999993
|
|
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=84.65 E-value=10 Score=32.22 Aligned_cols=103 Identities=9% Similarity=0.005 Sum_probs=55.7
Q ss_pred ChhhHHHhhhcccCCCCceeEEe---ecCCH--HHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHH
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMF---CGNDS--KNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 173 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi---~g~d~--~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~i 173 (240)
.|.++...+..++.....+...+ .|..+ ....++.+.++.|+|.||+-+- +|.....+++.+.+-
T Consensus 38 ~p~~v~~a~~~l~~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GAdEiDvv~n----------~g~l~~g~~~~v~~e 107 (211)
T TIGR00126 38 NPSYVPLAKELLKGTEVRICTVVGFPLGASTTDVKLYETKEAIKYGADEVDMVIN----------IGALKDGNEEVVYDD 107 (211)
T ss_pred CHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEeecc----------hHhhhCCcHHHHHHH
Confidence 35556555444332223332222 23333 2355566667789999996433 122223588888777
Q ss_pred HHHhhhccccccCCCCCCCCeeeEEeee---h--hcHHHHHHHHhC-CCCeEEE
Q psy7344 174 VYSPNMVHFVIAEPHCDGNDINIGCPQM---V--AKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 174 v~~~~~~~~~i~~~~~~~~~~pvsvK~r---~--~~~~~~~~~l~~-G~~~iti 221 (240)
++.+.+.. ..+|+.+=+- + +.....++...+ |+|+|--
T Consensus 108 i~~i~~~~----------~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKT 151 (211)
T TIGR00126 108 IRAVVEAC----------AGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKT 151 (211)
T ss_pred HHHHHHHc----------CCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 77777651 1233333111 2 234567777788 9999854
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=84.55 E-value=8.3 Score=33.68 Aligned_cols=73 Identities=8% Similarity=-0.038 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcH
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKR 205 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~ 205 (240)
.+..+.|+..++ |+++|-+..- ...+ ..+++.+..+. .. +++||..|--+.+.
T Consensus 70 ~~~~~~A~~~~~~GA~aisvlte-------~~~f----~g~~~~l~~v~----~~-----------v~iPvl~kdfi~~~ 123 (260)
T PRK00278 70 FDPVEIAKAYEAGGAACLSVLTD-------ERFF----QGSLEYLRAAR----AA-----------VSLPVLRKDFIIDP 123 (260)
T ss_pred CCHHHHHHHHHhCCCeEEEEecc-------cccC----CCCHHHHHHHH----Hh-----------cCCCEEeeeecCCH
Confidence 355788888776 7888855332 1112 23455555544 34 67899987766666
Q ss_pred HHHHHHHhCCCCeEEEeccc
Q psy7344 206 GHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 206 ~~~~~~l~~G~~~itih~R~ 225 (240)
.+.....+.|||+|++.++.
T Consensus 124 ~qi~~a~~~GAD~VlLi~~~ 143 (260)
T PRK00278 124 YQIYEARAAGADAILLIVAA 143 (260)
T ss_pred HHHHHHHHcCCCEEEEEecc
Confidence 65444444499999999887
|
|
| >cd00423 Pterin_binding Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=84.40 E-value=3.9 Score=35.57 Aligned_cols=85 Identities=14% Similarity=0.092 Sum_probs=54.9
Q ss_pred CCHHHHHHHHH-HHccCCCEEEecCCCchhhhhccccccccc---CCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEe
Q psy7344 124 NDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQ---DDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCP 199 (240)
Q Consensus 124 ~d~~~~~~aa~-~le~~~d~Idin~gCP~~~~~~~g~G~~l~---~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK 199 (240)
.|.+...+.++ ++++|+|.||||.+-..+ |+... ..++.+..+++.+++. .++|+++-
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p-------~~~~~~~~~E~~rl~~~v~~l~~~-----------~~~piSID 82 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRP-------GAEPVSVEEELERVIPVLRALAGE-----------PDVPISVD 82 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCC-------CCCcCCHHHHHHHHHHHHHHHHhc-----------CCCeEEEe
Confidence 46777666555 457799999999873222 11111 2345566667766654 47788887
Q ss_pred eeh--------------------hcH-HHHHHHHhC-CCCeEEEecccc
Q psy7344 200 QMV--------------------AKR-GHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 200 ~r~--------------------~~~-~~~~~~l~~-G~~~itih~R~~ 226 (240)
..- ... .++++.+.+ |+..|.+|.+..
T Consensus 83 T~~~~v~~aaL~~g~~iINdis~~~~~~~~~~l~~~~~~~vV~m~~~~~ 131 (258)
T cd00423 83 TFNAEVAEAALKAGADIINDVSGGRGDPEMAPLAAEYGAPVVLMHMDGT 131 (258)
T ss_pred CCcHHHHHHHHHhCCCEEEeCCCCCCChHHHHHHHHcCCCEEEECcCCC
Confidence 760 111 467787888 999999997653
|
This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH. |
| >PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP | Back alignment and domain information |
|---|
Probab=84.19 E-value=5 Score=34.06 Aligned_cols=83 Identities=12% Similarity=0.012 Sum_probs=52.5
Q ss_pred EEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEE
Q psy7344 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGC 198 (240)
Q Consensus 119 vqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsv 198 (240)
+-+-..+.++..+.++.+...++.|.+|... - .. +|. +.+.++++.+++. . .||.+
T Consensus 5 vALD~~~~~~a~~i~~~~~~~v~~iKvG~~l--~--~~--~G~------~~l~~~i~~l~~~-----------~-~~I~~ 60 (226)
T PF00215_consen 5 VALDPTDLEEALRIADELGDYVDIIKVGTPL--F--LA--YGL------EALPEIIEELKER-----------G-KPIFL 60 (226)
T ss_dssp EEE-SSSHHHHHHHHHHHGGGSSEEEEEHHH--H--HH--HCH------HHHHHHHHHHHHT-----------T-SEEEE
T ss_pred EEeCCCCHHHHHHHHHHhcCcceEEEEChHH--H--hc--CCh------hhHHHHHHHHHHh-----------c-CCEee
Confidence 3333356667777777777788999997652 1 11 222 2667888888775 2 56654
Q ss_pred --eee-hhcH-HHHHH---HHhC-CCCeEEEeccc
Q psy7344 199 --PQM-VAKR-GHYGA---YLQD-DWPLLTELGKM 225 (240)
Q Consensus 199 --K~r-~~~~-~~~~~---~l~~-G~~~itih~R~ 225 (240)
|+- +.+| ..+++ .+.+ |+|.+|+|+-.
T Consensus 61 D~K~~Dig~t~~~~~~~~~~~~~~gaD~vTv~~~~ 95 (226)
T PF00215_consen 61 DLKLGDIGNTVARYAEAGFAAFELGADAVTVHPFA 95 (226)
T ss_dssp EEEE-SSHHHHHHHHHSCHHHHTTTESEEEEEGTT
T ss_pred eeeecccchHHHHHHHHhhhhhcCCCcEEEEeccC
Confidence 444 4444 34554 5677 99999999976
|
In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A .... |
| >PRK09206 pyruvate kinase; Provisional | Back alignment and domain information |
|---|
Probab=84.15 E-value=7.6 Score=37.05 Aligned_cols=93 Identities=13% Similarity=0.050 Sum_probs=59.7
Q ss_pred CCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccc--cCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l--~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
..++++|| .+++-...+-+.++. +|+|++++| . .|..+ ..-|...+++++..++.
T Consensus 214 ~~~iiaKI--Et~eav~nldeIl~~-~DgImVaRG---D------Lgvelg~e~vp~~qk~ii~~~~~~----------- 270 (470)
T PRK09206 214 NIQIISKI--ENQEGLNNFDEILEA-SDGIMVARG---D------LGVEIPVEEVIFAQKMMIEKCNRA----------- 270 (470)
T ss_pred CceEEEEE--CCHHHHHhHHHHHHh-CCEEEECcc---h------hhhhcCHHHHHHHHHHHHHHHHHc-----------
Confidence 45788888 444444444444433 899999988 1 12222 33466667777776664
Q ss_pred CCeeeEEeee-hh-----------cHHHHHHHHhCCCCeEEEecccccccC
Q psy7344 192 NDINIGCPQM-VA-----------KRGHYGAYLQDDWPLLTELGKMAMLVG 230 (240)
Q Consensus 192 ~~~pvsvK~r-~~-----------~~~~~~~~l~~G~~~itih~R~~~~~~ 230 (240)
..|+.+=+. ++ ..-|.+.++.+|+|++.+-|-|..-+|
T Consensus 271 -gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~G~y 320 (470)
T PRK09206 271 -RKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKY 320 (470)
T ss_pred -CCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcCCCC
Confidence 456666444 22 345777788889999999888877654
|
|
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=84.11 E-value=12 Score=32.75 Aligned_cols=74 Identities=14% Similarity=0.115 Sum_probs=47.4
Q ss_pred eecCCHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEe
Q psy7344 121 FCGNDSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCP 199 (240)
Q Consensus 121 i~g~d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK 199 (240)
.+..|+... +.++ -||+.|+- .|-|. |.|.. +.+|+.++.+++. .++||.+-
T Consensus 129 yc~~d~~~a----k~l~~~G~~~vmP-lg~pI------Gsg~g-i~~~~~i~~i~e~---------------~~vpVIve 181 (250)
T PRK00208 129 YCTDDPVLA----KRLEEAGCAAVMP-LGAPI------GSGLG-LLNPYNLRIIIEQ---------------ADVPVIVD 181 (250)
T ss_pred EeCCCHHHH----HHHHHcCCCEeCC-CCcCC------CCCCC-CCCHHHHHHHHHh---------------cCCeEEEe
Confidence 455666533 3333 37777732 22122 23332 4679988777764 35688888
Q ss_pred eehhcHHHHHHHHhCCCCeEEE
Q psy7344 200 QMVAKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 200 ~r~~~~~~~~~~l~~G~~~iti 221 (240)
-++....+..++++.|+|++.+
T Consensus 182 aGI~tpeda~~AmelGAdgVlV 203 (250)
T PRK00208 182 AGIGTPSDAAQAMELGADAVLL 203 (250)
T ss_pred CCCCCHHHHHHHHHcCCCEEEE
Confidence 8888888888888889999876
|
|
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=83.98 E-value=3.7 Score=36.78 Aligned_cols=82 Identities=9% Similarity=-0.003 Sum_probs=50.0
Q ss_pred hhhhcccceee-eCChh---hHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhccccc
Q psy7344 86 VAKRGHYGAYL-QDDWP---LLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYG 160 (240)
Q Consensus 86 i~~~g~~ga~l-~~d~e---li~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G 160 (240)
+...|.+|.+. +.+-| +++..+..+ ....|+++.+...+.++..+.++..++ |+|+|++-. |.-
T Consensus 46 i~v~GstGE~~~Lt~eEr~~v~~~~~~~~-~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~--P~y-------- 114 (309)
T cd00952 46 ILTMGTFGECATLTWEEKQAFVATVVETV-AGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGR--PMW-------- 114 (309)
T ss_pred EEECcccccchhCCHHHHHHHHHHHHHHh-CCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECC--CcC--------
Confidence 33445667654 22222 233333333 335799999988899999999999876 899999843 321
Q ss_pred ccccCCHHHHHHHHHHhhhc
Q psy7344 161 AYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 161 ~~l~~~p~~i~~iv~~~~~~ 180 (240)
...+.+.+.+..+.+.++
T Consensus 115 --~~~~~~~l~~yf~~va~a 132 (309)
T cd00952 115 --LPLDVDTAVQFYRDVAEA 132 (309)
T ss_pred --CCCCHHHHHHHHHHHHHh
Confidence 123455665655555554
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.89 E-value=8.7 Score=33.33 Aligned_cols=98 Identities=9% Similarity=0.011 Sum_probs=63.0
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
+.++++++...+ ++-+|++|+ +.+...+.+.++.|++.|-++. ....||+.++++.+..-
T Consensus 63 n~~~i~~i~~~~-----~~~vQvGGG-IRs~~~v~~ll~~G~~rViiGt--------------~av~~p~~v~~~~~~~g 122 (241)
T COG0106 63 NLEAIKEILEAT-----DVPVQVGGG-IRSLEDVEALLDAGVARVIIGT--------------AAVKNPDLVKELCEEYG 122 (241)
T ss_pred cHHHHHHHHHhC-----CCCEEeeCC-cCCHHHHHHHHHCCCCEEEEec--------------ceecCHHHHHHHHHHcC
Confidence 457888887653 455788654 4444455666677766665533 34689999999998754
Q ss_pred hccccccCCCCCCCCeeeEEeee------h-----hcHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 179 MVHFVIAEPHCDGNDINIGCPQM------V-----AKRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 179 ~~~~~i~~~~~~~~~~pvsvK~r------~-----~~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
.. .-+-+.+|.. | -+..++++.+++ |+..+.+|.=++.
T Consensus 123 ~r-----------ivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~D 172 (241)
T COG0106 123 DR-----------IVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYTDISRD 172 (241)
T ss_pred Cc-----------EEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEEecccc
Confidence 32 1122333332 2 156899999999 9999988754443
|
|
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=83.55 E-value=7.2 Score=36.02 Aligned_cols=95 Identities=12% Similarity=-0.062 Sum_probs=51.6
Q ss_pred CCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccc--------cCCHHHHHHHHHHhhhcccccc
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--------QDDWPLLTNLVYSPNMVHFVIA 185 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l--------~~~p~~i~~iv~~~~~~~~~i~ 185 (240)
..||.+++..++..+...+. ..+.++|.|-|.-+ .+|+|++= +.-...+.++.+.+.+.
T Consensus 203 ~~pVgvKl~~~~~~~~~~~~-~~~ag~D~ItIDG~-------~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~----- 269 (368)
T PF01645_consen 203 GKPVGVKLVAGRGVEDIAAG-AAKAGADFITIDGA-------EGGTGAAPLTSMDHVGLPTEYALARAHQALVKN----- 269 (368)
T ss_dssp TSEEEEEEE-STTHHHHHHH-HHHTT-SEEEEE-T-------T---SSEECCHHHHC---HHHHHHHHHHHHHCT-----
T ss_pred CCcEEEEECCCCcHHHHHHh-hhhccCCEEEEeCC-------CCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHc-----
Confidence 47999999877666544333 44557899888544 35565532 11133345555555442
Q ss_pred CCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 186 ~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
+ +. .++.+.+-..+.+..++++++..|||++.+ ||.
T Consensus 270 -g-lr-~~V~Li~sGgl~t~~dv~kalaLGAD~v~i-gt~ 305 (368)
T PF01645_consen 270 -G-LR-DRVSLIASGGLRTGDDVAKALALGADAVYI-GTA 305 (368)
T ss_dssp -T--C-CCSEEEEESS--SHHHHHHHHHCT-SEEE--SHH
T ss_pred -C-CC-CceEEEEeCCccCHHHHHHHHhcCCCeeEe-cch
Confidence 1 11 134555555567778999999999999987 664
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=83.19 E-value=3.9 Score=35.70 Aligned_cols=60 Identities=15% Similarity=0.044 Sum_probs=39.0
Q ss_pred hhhhcccceeeeCCh----hhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEec
Q psy7344 86 VAKRGHYGAYLQDDW----PLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDIN 146 (240)
Q Consensus 86 i~~~g~~ga~l~~d~----eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin 146 (240)
+..-|.+|.+..-.+ ++++....... ...|+++.+.+.+..+..+.++..++ |+|+|++-
T Consensus 35 i~~~GstGE~~~ls~~Er~~l~~~~~~~~~-~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~ 99 (281)
T cd00408 35 LVVLGTTGEAPTLTDEERKEVIEAVVEAVA-GRVPVIAGVGANSTREAIELARHAEEAGADGVLVV 99 (281)
T ss_pred EEECCCCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEEC
Confidence 333455666442222 23333333332 34789999988888889999998876 89999993
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=83.01 E-value=2.6 Score=38.29 Aligned_cols=100 Identities=14% Similarity=0.034 Sum_probs=56.6
Q ss_pred CCCceeEEeecCC-------HHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccc
Q psy7344 113 HMCGHSLMFCGND-------SKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVI 184 (240)
Q Consensus 113 ~~~pvivqi~g~d-------~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i 184 (240)
.+.|+.+.|...+ .++..+++++++. +.|.+++..+.-........... ....+.......+.+++.
T Consensus 215 ~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~ik~~---- 289 (341)
T PF00724_consen 215 PDFPVGVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPP-FDFEPGYNLDLAEAIKKA---- 289 (341)
T ss_dssp GGGEEEEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTT-TTTTTTTTHHHHHHHHHH----
T ss_pred CCceEEEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccc-cccccchhhhhhhhhhhh----
Confidence 3567888886532 3555566777766 56777654443221111000101 111111112333444555
Q ss_pred cCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 185 AEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 185 ~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+++||.+-.++.+.....+.+++ .+|.|.+ ||.
T Consensus 290 -------~~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~-gR~ 323 (341)
T PF00724_consen 290 -------VKIPVIGVGGIRTPEQAEKALEEGKADLVAM-GRP 323 (341)
T ss_dssp -------HSSEEEEESSTTHHHHHHHHHHTTSTSEEEE-SHH
T ss_pred -------cCceEEEEeeecchhhhHHHHhcCCceEeec-cHH
Confidence 56788887888777667788888 8999998 775
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=82.49 E-value=3.9 Score=38.07 Aligned_cols=78 Identities=10% Similarity=-0.005 Sum_probs=47.6
Q ss_pred cCCHHHHHHHHHHHccC-CCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee
Q psy7344 123 GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM 201 (240)
Q Consensus 123 g~d~~~~~~aa~~le~~-~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r 201 (240)
..|.++..+.++.+.+. .+.+++|.- .-. . .-++.++++. +. +.+.++.+-+.
T Consensus 181 ~~~~~~A~~i~~~l~~~~~~~iKvG~~--L~~--~--------~G~~iVk~Lr----~~----------~~~~~I~~DLK 234 (391)
T PRK13307 181 LPDLEEVERVLSQLPKSDHIIIEAGTP--LIK--K--------FGLEVISKIR----EV----------RPDAFIVADLK 234 (391)
T ss_pred CCCHHHHHHHHHhcccccceEEEECHH--HHH--H--------hCHHHHHHHH----Hh----------CCCCeEEEEec
Confidence 34666666666666543 556666443 211 1 1134444444 32 04567888887
Q ss_pred hhcHHHH-HHHHhC-CCCeEEEecccc
Q psy7344 202 VAKRGHY-GAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 202 ~~~~~~~-~~~l~~-G~~~itih~R~~ 226 (240)
+.+...+ ++.+.+ |+|.+|+|+-..
T Consensus 235 ~~Di~~~vv~~~a~aGAD~vTVH~ea~ 261 (391)
T PRK13307 235 TLDTGNLEARMAADATADAVVISGLAP 261 (391)
T ss_pred ccChhhHHHHHHHhcCCCEEEEeccCC
Confidence 6666565 888888 999999998653
|
|
| >KOG2550|consensus | Back alignment and domain information |
|---|
Probab=82.45 E-value=3.2 Score=38.73 Aligned_cols=89 Identities=11% Similarity=0.064 Sum_probs=58.9
Q ss_pred EeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEe
Q psy7344 120 MFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCP 199 (240)
Q Consensus 120 qi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK 199 (240)
++.++|.-+.+.+..++..|+|++-+++||-+..+...-++.. -..-..+.++.+.... ..+|+.+-
T Consensus 294 ~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~G-rpQ~TAVy~va~~A~q------------~gvpviAD 360 (503)
T KOG2550|consen 294 QIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICITQKVMACG-RPQGTAVYKVAEFANQ------------FGVPCIAD 360 (503)
T ss_pred eeeccceeeHHHHHHHHHccCceeEeccccCceeeeceeeecc-CCcccchhhHHHHHHh------------cCCceeec
Confidence 6667888888888889999999999999987765554322221 1222344555554443 35577766
Q ss_pred eehhcHHHHHHHHhCCCCeEEE
Q psy7344 200 QMVAKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 200 ~r~~~~~~~~~~l~~G~~~iti 221 (240)
.-+.+.-.++++|..|++.+.+
T Consensus 361 GGiq~~Ghi~KAl~lGAstVMm 382 (503)
T KOG2550|consen 361 GGIQNVGHVVKALGLGASTVMM 382 (503)
T ss_pred CCcCccchhHhhhhcCchhhee
Confidence 6666666777777668876654
|
|
| >PRK01060 endonuclease IV; Provisional | Back alignment and domain information |
|---|
Probab=82.37 E-value=7.4 Score=33.75 Aligned_cols=84 Identities=11% Similarity=-0.219 Sum_probs=49.2
Q ss_pred HHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc-cccccCCCCCCCCeeeEEeee-----
Q psy7344 129 LTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV-HFVIAEPHCDGNDINIGCPQM----- 201 (240)
Q Consensus 129 ~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~-~~~i~~~~~~~~~~pvsvK~r----- 201 (240)
+.++++.+.+ |+|+|+|..+.|.... +. ..+++.++++.+.+.+. +.+. .+ ....|....+-
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~-----~~--~~~~~~~~~lk~~~~~~gl~~~---~~-~~h~~~~~nl~~~d~~ 82 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWK-----RK--PLEELNIEAFKAACEKYGISPE---DI-LVHAPYLINLGNPNKE 82 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCc-----CC--CCCHHHHHHHHHHHHHcCCCCC---ce-EEecceEecCCCCCHH
Confidence 5567777754 9999999999886532 11 13777888888777653 1100 00 00001111111
Q ss_pred -----hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 -----VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 -----~~~~~~~~~~l~~-G~~~itih~ 223 (240)
++.+.+.++...+ |++.|++|.
T Consensus 83 ~r~~s~~~~~~~i~~A~~lga~~vv~h~ 110 (281)
T PRK01060 83 ILEKSRDFLIQEIERCAALGAKLLVFHP 110 (281)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 2234566667788 999999985
|
|
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=82.16 E-value=6.8 Score=34.21 Aligned_cols=106 Identities=8% Similarity=-0.138 Sum_probs=57.0
Q ss_pred ChhhHHHhhhcccCCCCceeEEee-cCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccc--cCCHHHHHHHH
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFC-GNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLV 174 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~-g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l--~~~p~~i~~iv 174 (240)
+.+++..+- ....|++++-+ ..+++++..+++.+.. |..-|.+---|- .+|.... ..|...+.
T Consensus 111 n~~LL~~va----~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~------~~Y~~~~~n~~dl~ai~--- 177 (250)
T PRK13397 111 NFEFLKTLS----HIDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGV------RGYDVETRNMLDIMAVP--- 177 (250)
T ss_pred CHHHHHHHH----ccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEcccc------CCCCCccccccCHHHHH---
Confidence 345554443 23589999976 6799999999999865 544444322121 1122110 12333333
Q ss_pred HHhhhccccccCCCCCCCCeeeEEeee----h-hcHHHHHHHHhC-CCC--eEEEeccccccc
Q psy7344 175 YSPNMVHFVIAEPHCDGNDINIGCPQM----V-AKRGHYGAYLQD-DWP--LLTELGKMAMLV 229 (240)
Q Consensus 175 ~~~~~~~~~i~~~~~~~~~~pvsvK~r----~-~~~~~~~~~l~~-G~~--~itih~R~~~~~ 229 (240)
.+++. ...||.+--. . +-...++++... |++ .|-.|.--.+..
T Consensus 178 -~lk~~-----------~~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~~P~~A~ 228 (250)
T PRK13397 178 -IIQQK-----------TDLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHPDPDHAL 228 (250)
T ss_pred -HHHHH-----------hCCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEecCCccccc
Confidence 33332 3456554333 1 223467788888 999 555565544443
|
|
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Probab=82.15 E-value=12 Score=32.39 Aligned_cols=80 Identities=14% Similarity=0.086 Sum_probs=50.8
Q ss_pred CceeEEeecCCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCC
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGND 193 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~ 193 (240)
.|+...+...+++++.+.++.+ +.|+..+-+..| .+++.-.+.++++++.+ + .+
T Consensus 75 i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg----------------~~~~~d~~~v~~vr~~~---g------~~ 129 (265)
T cd03315 75 VRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVG----------------RDPARDVAVVAALREAV---G------DD 129 (265)
T ss_pred eEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecC----------------CCHHHHHHHHHHHHHhc---C------CC
Confidence 5666666556777777655544 568888888665 23444456677777652 0 13
Q ss_pred eeeEEe--eeh--hcHHHHHHHHhC-CCCeE
Q psy7344 194 INIGCP--QMV--AKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 194 ~pvsvK--~r~--~~~~~~~~~l~~-G~~~i 219 (240)
+++.+. .++ ++..++++.|++ |+++|
T Consensus 130 ~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i 160 (265)
T cd03315 130 AELRVDANRGWTPKQAIRALRALEDLGLDYV 160 (265)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHhcCCCEE
Confidence 344433 333 567889999999 99887
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. |
| >PRK06739 pyruvate kinase; Validated | Back alignment and domain information |
|---|
Probab=81.63 E-value=16 Score=33.59 Aligned_cols=93 Identities=13% Similarity=-0.026 Sum_probs=58.3
Q ss_pred CCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccc--cCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l--~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
..+++.+| .+.+-...+-+.++ .+||||+.+|= .|-.+ -.=|..=++|++..+..
T Consensus 207 ~~~IiaKI--E~~~av~nl~eI~~-~sDgimVARGD---------Lgve~~~e~vp~~Qk~Ii~~c~~~----------- 263 (352)
T PRK06739 207 SPNLIAKI--ETMEAIENFQDICK-EADGIMIARGD---------LGVELPYQFIPLLQKMMIQECNRT----------- 263 (352)
T ss_pred CCcEEEEE--CCHHHHHHHHHHHH-hcCEEEEECcc---------cccccCHHHHHHHHHHHHHHHHHh-----------
Confidence 45788887 44333333333333 37999999881 22222 23355557777776664
Q ss_pred CCeeeEEeee-hh-----------cHHHHHHHHhCCCCeEEEecccccccC
Q psy7344 192 NDINIGCPQM-VA-----------KRGHYGAYLQDDWPLLTELGKMAMLVG 230 (240)
Q Consensus 192 ~~~pvsvK~r-~~-----------~~~~~~~~l~~G~~~itih~R~~~~~~ 230 (240)
..||.+=+. ++ ..-+.+.++.+|+|++.+-+-|..-+|
T Consensus 264 -gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS~ETA~G~y 313 (352)
T PRK06739 264 -NTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESASGEH 313 (352)
T ss_pred -CCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEcccccCCCC
Confidence 557776555 21 345777778889999999888877654
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=81.61 E-value=28 Score=31.80 Aligned_cols=129 Identities=12% Similarity=0.017 Sum_probs=73.8
Q ss_pred ecccccccCCCccccccCchhhhhhhhcccceeee-CChhhHHHhhhcccCC-CCceeEEeecCCHHHHHHHHHHHcc--
Q psy7344 63 MGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQ-DDWPLLTELGFKTRSH-MCGHSLMFCGNDSKNLTEAAKLAEP-- 138 (240)
Q Consensus 63 vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~-~d~eli~~i~~~~~~~-~~pvivqi~g~d~~~~~~aa~~le~-- 138 (240)
.+.+.+-++|...++..+- ..++.+|..+..-. .+.+--.+.+...++. ..-+.+.+ |-.++++..+.++++.
T Consensus 45 ~giPii~AnMdTV~~~~mA--~~la~~g~~~~iHk~~~~e~~~~fv~~~~~~~~~~~~vav-G~~~~d~er~~~L~~~~~ 121 (346)
T PRK05096 45 SGVPIIAANMDTVGTFEMA--KALASFDILTAVHKHYSVEEWAAFVNNSSADVLKHVMVST-GTSDADFEKTKQILALSP 121 (346)
T ss_pred cCCceEecCCCccccHHHH--HHHHHCCCeEEEecCCCHHHHHHHHHhccccccceEEEEe-cCCHHHHHHHHHHHhcCC
Confidence 3455667899999988884 77888876665332 2233212222222211 11233333 3355777777777774
Q ss_pred CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCC
Q psy7344 139 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWP 217 (240)
Q Consensus 139 ~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~ 217 (240)
++|.|-|-.. |+ +-+.+-++++.+++.. .+++|.+= -+ -|.+.++.|.+ |||
T Consensus 122 g~D~iviD~A-------hG--------hs~~~i~~ik~ik~~~----------P~~~vIaG-NV-~T~e~a~~Li~aGAD 174 (346)
T PRK05096 122 ALNFICIDVA-------NG--------YSEHFVQFVAKAREAW----------PDKTICAG-NV-VTGEMVEELILSGAD 174 (346)
T ss_pred CCCEEEEECC-------CC--------cHHHHHHHHHHHHHhC----------CCCcEEEe-cc-cCHHHHHHHHHcCCC
Confidence 6888655444 22 4456667788877762 22333320 01 34568888989 999
Q ss_pred eEEE
Q psy7344 218 LLTE 221 (240)
Q Consensus 218 ~iti 221 (240)
.|-+
T Consensus 175 ~vKV 178 (346)
T PRK05096 175 IVKV 178 (346)
T ss_pred EEEE
Confidence 9864
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=81.58 E-value=11 Score=31.04 Aligned_cols=82 Identities=17% Similarity=0.030 Sum_probs=51.2
Q ss_pred eEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeE
Q psy7344 118 SLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIG 197 (240)
Q Consensus 118 ivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvs 197 (240)
++-|--.+.++..+.++.+.++++.|+++.- ... . .| ++.++.+.+. . .++|+.
T Consensus 4 ~~a~d~~~~~~~~~~~~~l~~~i~~ieig~~--~~~--~--~g------~~~i~~i~~~---~-----------~~~~i~ 57 (202)
T cd04726 4 QVALDLLDLEEALELAKKVPDGVDIIEAGTP--LIK--S--EG------MEAVRALREA---F-----------PDKIIV 57 (202)
T ss_pred EEEEcCCCHHHHHHHHHHhhhcCCEEEcCCH--HHH--H--hC------HHHHHHHHHH---C-----------CCCEEE
Confidence 3344345788888888888777999999433 211 1 11 4444444432 1 356777
Q ss_pred EeeehhcH-HHHHHHHhC-CCCeEEEeccc
Q psy7344 198 CPQMVAKR-GHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 198 vK~r~~~~-~~~~~~l~~-G~~~itih~R~ 225 (240)
+=+.+.+. ..+++.+.+ |++.+++|+..
T Consensus 58 ~~~~v~~~~~~~~~~~~~aGad~i~~h~~~ 87 (202)
T cd04726 58 ADLKTADAGALEAEMAFKAGADIVTVLGAA 87 (202)
T ss_pred EEEEeccccHHHHHHHHhcCCCEEEEEeeC
Confidence 64443333 245688888 99999999975
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PTZ00300 pyruvate kinase; Provisional | Back alignment and domain information |
|---|
Probab=81.52 E-value=9.6 Score=36.21 Aligned_cols=93 Identities=11% Similarity=0.040 Sum_probs=59.9
Q ss_pred CCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccc--cCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l--~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
..+++.|| .+++-...+-+.+ +++|||++++| . .|..+ ..-|...++|++..++.
T Consensus 188 ~~~IiaKI--Et~eav~nldeI~-~~~DgImVaRG---D------Lgvei~~e~vp~~Qk~Ii~~~~~~----------- 244 (454)
T PTZ00300 188 DIMIICKI--ENHQGVQNIDSII-EESDGIMVARG---D------LGVEIPAEKVVVAQKILISKCNVA----------- 244 (454)
T ss_pred CceEEEEE--CCHHHHHhHHHHH-HhCCEEEEecc---h------hhhhcChHHHHHHHHHHHHHHHHc-----------
Confidence 45788888 5555444444444 67999999988 1 22222 23355666777766654
Q ss_pred CCeeeEEeee-hh-----------cHHHHHHHHhCCCCeEEEecccccccC
Q psy7344 192 NDINIGCPQM-VA-----------KRGHYGAYLQDDWPLLTELGKMAMLVG 230 (240)
Q Consensus 192 ~~~pvsvK~r-~~-----------~~~~~~~~l~~G~~~itih~R~~~~~~ 230 (240)
..|+.+=+. ++ ..-|.+.++.+|+|++.+-+-|..-+|
T Consensus 245 -gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~y 294 (454)
T PTZ00300 245 -GKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKY 294 (454)
T ss_pred -CCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCCC
Confidence 456665444 22 345788888889999999888876554
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=81.32 E-value=11 Score=32.64 Aligned_cols=94 Identities=12% Similarity=-0.141 Sum_probs=53.7
Q ss_pred CceeEEee---cCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhh-ccccccCCCC
Q psy7344 115 CGHSLMFC---GNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM-VHFVIAEPHC 189 (240)
Q Consensus 115 ~pvivqi~---g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~-~~~~i~~~~~ 189 (240)
.|+++-+- ++++++..+.++.+.+ |+++|.|-=+. +.+.. ++++++ .++||+..+.
T Consensus 74 ~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iED~~------------------~~~~~-i~ai~~a~i~ViaRtd~ 134 (240)
T cd06556 74 ALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIEGGE------------------WHIET-LQMLTAAAVPVIAHTGL 134 (240)
T ss_pred CCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEcCcH------------------HHHHH-HHHHHHcCCeEEEEeCC
Confidence 58888873 3455777777776654 88999885441 22222 333333 4556543332
Q ss_pred CCCCee----eEEeee----hhcHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 190 DGNDIN----IGCPQM----VAKRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 190 ~~~~~p----vsvK~r----~~~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
.....- ..++.| .+..++-++.+++ |||.|.+++.+.+
T Consensus 135 ~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~~~e 181 (240)
T cd06556 135 TPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECVPVE 181 (240)
T ss_pred chhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCCCHH
Confidence 100000 012222 4456777888999 9999999987443
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4 | Back alignment and domain information |
|---|
Probab=81.28 E-value=11 Score=31.70 Aligned_cols=83 Identities=10% Similarity=-0.013 Sum_probs=58.2
Q ss_pred EEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeE
Q psy7344 119 LMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIG 197 (240)
Q Consensus 119 vqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvs 197 (240)
+.+.+.+.+++...++.++. ++|.|++-.-+-.. .+.+.+.+.+..++.. .++|+.
T Consensus 2 v~l~~~~~~~~~~~~~~~~~~~~D~vElRlD~l~~------------~~~~~~~~~l~~lr~~-----------~~~piI 58 (224)
T PF01487_consen 2 VPLTGSTLEELLAELEEAESSGADAVELRLDYLEN------------DSAEDISEQLAELRRS-----------LDLPII 58 (224)
T ss_dssp EEE--SSHHHHHHHHHHHHHTTTSEEEEEGGGSTT------------TSHHHHHHHHHHHHHH-----------CTSEEE
T ss_pred EeeCCCCHHHHHHHHHHHHhcCCCEEEEEeccccc------------cChHHHHHHHHHHHHh-----------CCCCEE
Confidence 45667888888777777766 89999997663111 4677888888888877 677988
Q ss_pred Eeeeh-----------hcHHHHHHHHhC-CCCeEEEecc
Q psy7344 198 CPQMV-----------AKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 198 vK~r~-----------~~~~~~~~~l~~-G~~~itih~R 224 (240)
+-+|. +...++.+.+.+ |+++|.|--.
T Consensus 59 ~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE~~ 97 (224)
T PF01487_consen 59 FTVRTKEEGGRFQGSEEEYLELLERAIRLGPDYIDIELD 97 (224)
T ss_dssp EE--BGGGTSSBSS-HHHHHHHHHHHHHHTSSEEEEEGG
T ss_pred EEecccccCCCCcCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 88882 234667777778 9999998665
|
2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A .... |
| >PLN02765 pyruvate kinase | Back alignment and domain information |
|---|
Probab=81.15 E-value=15 Score=35.62 Aligned_cols=92 Identities=14% Similarity=0.074 Sum_probs=58.2
Q ss_pred CCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccc--cCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l--~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
..+++.+| .+++-...+-+.++ .+||||+.+|= .|..+ -.=|..=++|++..+..
T Consensus 249 ~~~IiaKI--E~~~av~nl~eIi~-~sDgIMVARGD---------LGvEip~e~vp~~QK~iI~~c~~~----------- 305 (526)
T PLN02765 249 QTQIFAKI--ENVEGLTHFDEILQ-EADGIILSRGN---------LGIDLPPEKVFLFQKAALYKCNMA----------- 305 (526)
T ss_pred CCcEEEEE--CCHHHHHHHHHHHH-hcCEEEEecCc---------cccccCHHHhHHHHHHHHHHHHHh-----------
Confidence 46788888 44443333333333 47999999981 22222 22355556777766654
Q ss_pred CCeeeEEeee-hh-----------cHHHHHHHHhCCCCeEEEecccccccC
Q psy7344 192 NDINIGCPQM-VA-----------KRGHYGAYLQDDWPLLTELGKMAMLVG 230 (240)
Q Consensus 192 ~~~pvsvK~r-~~-----------~~~~~~~~l~~G~~~itih~R~~~~~~ 230 (240)
..||.+ +. ++ ..-|.+.++.+|+|++.+-|-|..-+|
T Consensus 306 -gKPVI~-TQmLeSMi~np~PTRAEvsDVaNAV~DGaDavMLSgETA~G~y 354 (526)
T PLN02765 306 -GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGADAILLGAETLRGLY 354 (526)
T ss_pred -CCCeEE-ehhhhHHhhCCCCChhhHHHHHHHHHhCCCEEEecchhcCCCC
Confidence 568877 44 22 245777788889999999888877654
|
|
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=80.91 E-value=4.2 Score=35.80 Aligned_cols=63 Identities=14% Similarity=0.052 Sum_probs=44.6
Q ss_pred CCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 113 HMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 113 ~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
...|+++.+.+.+.++..+.++.+++ |+|++++-. |.- ...+.+.+.+..+.+.+.
T Consensus 69 ~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~--P~~----------~~~s~~~l~~y~~~ia~~----------- 125 (289)
T PF00701_consen 69 GRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIP--PYY----------FKPSQEELIDYFRAIADA----------- 125 (289)
T ss_dssp TSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEE--STS----------SSCCHHHHHHHHHHHHHH-----------
T ss_pred CceEEEecCcchhHHHHHHHHHHHhhcCceEEEEec--ccc----------ccchhhHHHHHHHHHHhh-----------
Confidence 34799999999999999999999876 899999832 322 123566666666666666
Q ss_pred CCeeeEE
Q psy7344 192 NDINIGC 198 (240)
Q Consensus 192 ~~~pvsv 198 (240)
+++|+.+
T Consensus 126 ~~~pi~i 132 (289)
T PF00701_consen 126 TDLPIII 132 (289)
T ss_dssp SSSEEEE
T ss_pred cCCCEEE
Confidence 5667664
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=80.83 E-value=7.3 Score=32.27 Aligned_cols=81 Identities=16% Similarity=0.075 Sum_probs=48.0
Q ss_pred EEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEE
Q psy7344 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGC 198 (240)
Q Consensus 119 vqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsv 198 (240)
+-+-..+.++..+.++.++.+.+.|+++...-.. .-++.++++.+... . ..+.+..
T Consensus 4 ~alD~~~~~~a~~~~~~l~~~v~~iev~~~l~~~------------~g~~~i~~l~~~~~-~-----------~~i~~d~ 59 (206)
T TIGR03128 4 LALDLLDIEEALELAEKVADYVDIIEIGTPLIKN------------EGIEAVKEMKEAFP-D-----------RKVLADL 59 (206)
T ss_pred EEecCCCHHHHHHHHHHcccCeeEEEeCCHHHHH------------hCHHHHHHHHHHCC-C-----------CEEEEEE
Confidence 3444568888889999886678999995331101 12344545544311 1 2233444
Q ss_pred eeehhcHHHH-HHHHhC-CCCeEEEeccc
Q psy7344 199 PQMVAKRGHY-GAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 199 K~r~~~~~~~-~~~l~~-G~~~itih~R~ 225 (240)
|+. +...+ ++.+.+ |+|+|++|+=+
T Consensus 60 k~~--d~~~~~~~~~~~~Gad~i~vh~~~ 86 (206)
T TIGR03128 60 KTM--DAGEYEAEQAFAAGADIVTVLGVA 86 (206)
T ss_pred eec--cchHHHHHHHHHcCCCEEEEeccC
Confidence 444 33333 677778 99999999865
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=80.76 E-value=7.4 Score=34.55 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=53.4
Q ss_pred HHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHH
Q psy7344 131 EAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYG 209 (240)
Q Consensus 131 ~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~ 209 (240)
+-|+..|+ |+-+||.----|+..-..+ |-+-+.+|+.|++|.+. +++||..+.+... ..-+
T Consensus 19 ~qa~~ae~aga~~v~~~~~~~~~~~~~~--~v~R~~~~~~I~~Ik~~---------------V~iPVIGi~K~~~-~~Ea 80 (283)
T cd04727 19 EQARIAEEAGAVAVMALERVPADIRAAG--GVARMADPKMIKEIMDA---------------VSIPVMAKVRIGH-FVEA 80 (283)
T ss_pred HHHHHHHHcCceEEeeeccCchhhhhcC--CeeecCCHHHHHHHHHh---------------CCCCeEEeeehhH-HHHH
Confidence 34566665 7777776555677653333 44457899998888875 6889999998543 5667
Q ss_pred HHHhC-CCCeEEEecc
Q psy7344 210 AYLQD-DWPLLTELGK 224 (240)
Q Consensus 210 ~~l~~-G~~~itih~R 224 (240)
+.|++ |+|.|--+.|
T Consensus 81 ~~L~eaGvDiIDaT~r 96 (283)
T cd04727 81 QILEALGVDMIDESEV 96 (283)
T ss_pred HHHHHcCCCEEeccCC
Confidence 78888 9999964444
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=80.22 E-value=3.3 Score=36.24 Aligned_cols=134 Identities=13% Similarity=0.040 Sum_probs=72.1
Q ss_pred CCcccCCCchhHHHHHHHhhcccCCCceeeccccc--ccCCCccccc--cCchhhhhhhhccccee-----eeCChhhHH
Q psy7344 34 YGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFI--AEPHCDGIDI--NIGCPQMVAKRGHYGAY-----LQDDWPLLT 104 (240)
Q Consensus 34 ~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~--lap~~~~~dl--~~gC~~~i~~~g~~ga~-----l~~d~eli~ 104 (240)
-||+++.+++| +.++. ..+.|+.++.-.. +..+...++. ..|+.+.+..|.++..| ...|+..+.
T Consensus 114 I~s~~~~n~~L----L~~~a--~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~ 187 (260)
T TIGR01361 114 IGARNMQNFEL----LKEVG--KQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVP 187 (260)
T ss_pred ECcccccCHHH----HHHHh--cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHH
Confidence 45779999998 44555 4678998874332 2233333322 55655544334333333 133455555
Q ss_pred HhhhcccCCCCceeEEe--ecCCHHHHHHHHHH-HccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhh
Q psy7344 105 ELGFKTRSHMCGHSLMF--CGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM 179 (240)
Q Consensus 105 ~i~~~~~~~~~pvivqi--~g~d~~~~~~aa~~-le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~ 179 (240)
.+.... ..|+++.- .+++.+....+++. +..|++|+.|...+--..+..- +. ..-+|+.++++++.+++
T Consensus 188 ~lk~~~---~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t~d~a~~D--~~-~sl~p~~l~~lv~~i~~ 259 (260)
T TIGR01361 188 VLKKET---HLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPDPEKALSD--SK-QQLTPEEFKRLVKELRA 259 (260)
T ss_pred HHHHhh---CCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCCccccCCc--ch-hcCCHHHHHHHHHHHhh
Confidence 554322 35766621 12223333344433 3458998777777433333211 22 34689999999988764
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=80.01 E-value=14 Score=31.21 Aligned_cols=81 Identities=15% Similarity=0.095 Sum_probs=49.5
Q ss_pred eEEeec-CCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 118 SLMFCG-NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 118 ivqi~g-~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
.+||+| .++++...++ +.|+|.+=+-+-..++ + --+++.+++|.+.+...+ ..+-|
T Consensus 4 ~vKICGi~~~eda~~~~---~~Gad~iGfI~~~~S~-----R-----~V~~~~a~~i~~~~~~~i----------~~VgV 60 (210)
T PRK01222 4 RVKICGITTPEDAEAAA---ELGADAIGFVFYPKSP-----R-----YVSPEQAAELAAALPPFV----------KVVGV 60 (210)
T ss_pred eEEECCCCcHHHHHHHH---HcCCCEEEEccCCCCC-----C-----cCCHHHHHHHHHhCCCCC----------CEEEE
Confidence 368877 4555443333 3477777665432222 1 257899999998765421 22333
Q ss_pred EEeeehhcHHHHHHHHhC-CCCeEEEecc
Q psy7344 197 GCPQMVAKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 197 svK~r~~~~~~~~~~l~~-G~~~itih~R 224 (240)
+++ .+..++.+.+++ +.|.|.+||-
T Consensus 61 f~~---~~~~~i~~~~~~~~~d~vQLHg~ 86 (210)
T PRK01222 61 FVN---ASDEEIDEIVETVPLDLLQLHGD 86 (210)
T ss_pred EeC---CCHHHHHHHHHhcCCCEEEECCC
Confidence 332 345567777888 9999999984
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 240 | ||||
| 3b0v_C | 363 | Trna-Dihydrouridine Synthase From Thermus Thermophi | 7e-05 | ||
| 3b0p_A | 350 | Trna-Dihydrouridine Synthase From Thermus Thermophi | 8e-05 |
| >pdb|3B0V|C Chain C, Trna-Dihydrouridine Synthase From Thermus Thermophilus In Complex With Trna Length = 363 | Back alignment and structure |
|
| >pdb|3B0P|A Chain A, Trna-Dihydrouridine Synthase From Thermus Thermophilus Length = 350 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 240 | |||
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 6e-05 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 1e-04 |
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* Length = 350 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 6e-05
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 123 GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYL 163
G+D K+L EAA++ E D I++N+GCP A+ G YGA L
Sbjct: 66 GSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACL 107
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 Length = 318 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 1e-04
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 123 GNDSKNLTEAAKLAEPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 174
G++ L+EAA++ ID+N GCP + V K G G L D +V
Sbjct: 67 GSEPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGA-GGALLKDLRHFRYIV 118
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 240 | |||
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 99.84 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 99.83 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 99.52 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 99.49 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 99.46 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 99.45 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 99.44 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 99.44 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 99.39 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.33 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 99.29 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 99.27 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 99.19 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 99.16 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 99.01 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 98.94 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 98.87 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 98.86 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 98.85 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 98.85 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 98.8 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 98.8 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 98.75 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 98.75 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 98.73 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 98.68 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 98.66 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 98.65 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 98.59 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 98.59 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 98.57 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 98.57 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 98.53 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 98.51 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 98.47 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 98.44 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 98.41 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 98.4 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 98.39 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 98.38 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 98.37 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 98.31 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 98.31 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 98.31 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 98.22 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 98.2 | |
| 3tjl_A | 407 | NADPH dehydrogenase; OLD yellow enzyme, flavin mon | 98.19 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 98.18 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 98.16 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 98.13 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 98.12 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 98.09 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 98.04 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 98.01 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 97.98 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 97.94 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 97.93 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 97.9 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 97.88 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 97.81 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 97.79 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 97.61 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 97.6 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 97.59 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 97.57 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 97.56 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 97.53 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 97.52 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 97.51 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 97.51 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 97.51 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 97.43 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 97.42 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 97.38 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 97.32 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 97.23 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 97.23 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 97.22 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 97.16 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 96.97 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 96.96 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 96.96 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 96.95 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 96.95 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 96.9 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 96.9 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 96.68 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 96.67 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 96.66 | |
| 3tjl_A | 407 | NADPH dehydrogenase; OLD yellow enzyme, flavin mon | 96.62 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 96.61 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 96.6 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 96.59 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 96.56 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 96.55 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 96.48 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 96.41 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 96.24 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 96.22 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 96.15 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 96.15 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 95.85 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 95.51 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 95.49 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 95.28 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 95.24 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 95.11 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 94.79 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 94.78 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 94.53 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 94.49 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 94.35 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 94.27 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 94.2 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 94.03 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 93.83 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 93.73 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 93.71 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 93.67 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 93.64 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 93.48 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 93.45 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 93.39 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 93.36 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 93.3 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 93.28 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 93.21 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 93.16 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 93.14 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 93.1 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 93.09 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 93.0 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 92.97 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 92.8 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 92.56 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 92.53 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 92.33 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 92.29 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 92.21 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 92.17 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 92.15 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 91.92 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 91.89 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 91.88 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 91.48 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 91.42 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 91.4 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 91.21 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 91.16 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 91.09 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 90.99 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 90.96 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 90.79 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 90.7 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 90.61 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 90.61 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 90.39 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 89.93 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 89.92 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 89.84 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 89.74 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 89.74 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 89.67 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 89.66 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 89.63 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 89.52 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 89.39 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 89.22 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 89.21 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 89.15 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 89.05 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 88.94 | |
| 4gbu_A | 400 | NADPH dehydrogenase 1; alpha/beta barrel, enenone | 88.92 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 88.84 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 88.83 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 88.81 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 88.69 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 88.55 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 88.54 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 88.53 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 88.53 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 88.52 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 88.51 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 88.47 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 88.39 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 88.33 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 88.31 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 88.16 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 88.09 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 88.03 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 88.0 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 87.97 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 87.95 | |
| 1f6y_A | 262 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 87.95 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 87.92 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 87.81 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 87.79 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 87.72 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 87.64 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 87.55 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 87.27 | |
| 3r4e_A | 418 | Mandelate racemase/muconate lactonizing enzyme; en | 87.24 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 87.21 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 87.2 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 86.99 | |
| 3rcy_A | 433 | Mandelate racemase/muconate lactonizing enzyme-LI | 86.97 | |
| 3ro6_B | 356 | Putative chloromuconate cycloisomerase; TIM barrel | 86.86 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 86.85 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 86.81 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 86.55 | |
| 2czd_A | 208 | Orotidine 5'-phosphate decarboxylase; pyrimidine b | 86.45 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 86.29 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 86.14 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 86.08 | |
| 3exr_A | 221 | RMPD (hexulose-6-phosphate synthase); beta barrel, | 86.06 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 85.6 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 85.48 | |
| 4dpp_A | 360 | DHDPS 2, dihydrodipicolinate synthase 2, chloropla | 85.46 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 84.77 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 84.4 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 84.38 | |
| 2hmc_A | 344 | AGR_L_411P, dihydrodipicolinate synthase; alpha-be | 84.21 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 84.17 | |
| 3o1n_A | 276 | 3-dehydroquinate dehydratase; structural genomics, | 83.94 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 83.9 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 83.81 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 83.68 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 83.6 | |
| 3rr1_A | 405 | GALD, putative D-galactonate dehydratase; enolase, | 83.33 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 83.31 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 83.22 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 83.09 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 83.05 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 83.04 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 82.7 | |
| 3sbf_A | 401 | Mandelate racemase / muconate lactonizing enzyme; | 82.52 | |
| 4aaj_A | 228 | N-(5'-phosphoribosyl)anthranilate isomerase; alpha | 82.51 | |
| 2y5s_A | 294 | DHPS, dihydropteroate synthase; transferase, folat | 82.39 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 82.25 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 82.22 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 82.22 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 82.15 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 82.11 | |
| 3k13_A | 300 | 5-methyltetrahydrofolate-homocysteine methyltrans; | 82.06 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 82.03 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 81.93 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 81.8 | |
| 1eix_A | 245 | Orotidine 5'-monophosphate decarboxylase; alpha-be | 81.62 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 81.58 | |
| 1v5x_A | 203 | PRA isomerase, phosphoribosylanthranilate isomeras | 81.34 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 81.29 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 81.24 | |
| 4h3d_A | 258 | 3-dehydroquinate dehydratase; structural genomics, | 81.1 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 80.91 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 80.85 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 80.82 | |
| 2vef_A | 314 | Dihydropteroate synthase; antibiotic resistance, t | 80.82 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 80.77 | |
| 1dbt_A | 239 | Orotidine 5'-phosphate decarboxylase; UMP, TIM bar | 80.63 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 80.58 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 80.54 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 80.49 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 80.48 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 80.45 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 80.33 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 80.2 | |
| 1q7z_A | 566 | 5-methyltetrahydrofolate S-homocysteine methyltran | 80.03 |
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=167.23 Aligned_cols=158 Identities=14% Similarity=0.140 Sum_probs=124.3
Q ss_pred ecccccccCCCccccccCchhhhhhhhcccceeeeCC----------hhhHHHhhhcccCCCCceeEEeecCCHHHHHHH
Q psy7344 63 MGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD----------WPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEA 132 (240)
Q Consensus 63 vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~d----------~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~a 132 (240)
++.+.+++||.+++|.+|+ ......| .|...+.. ....+.+ +.+.+.|+++||+|++++.+.++
T Consensus 3 l~nri~~APM~~~t~~~~r--~~~~~~G-~gli~te~~~~~~~~~~~~~~~~~l---~~~~~~~~~~QL~g~~~~~~~~a 76 (318)
T 1vhn_A 3 LEVKVGLAPMAGYTDSAFR--TLAFEWG-ADFAFSEMVSAKGFLMNSQKTEELL---PQPHERNVAVQIFGSEPNELSEA 76 (318)
T ss_dssp --CEEEECCCTTTCSHHHH--HHHHTTT-CCCEECSCEEHHHHHTTCHHHHHHS---CCTTCTTEEEEEECSCHHHHHHH
T ss_pred cCCCEEECCCCCCCcHHHH--HHHHHHC-cCEEEeCCEEEcccccCCHhHHHhh---hCcCCCeEEEEeCCCCHHHHHHH
Confidence 4566788999999988886 3333332 23322211 1111222 34456899999999999999999
Q ss_pred HHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh----hcHHHH
Q psy7344 133 AKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV----AKRGHY 208 (240)
Q Consensus 133 a~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~----~~~~~~ 208 (240)
++.+++.+|+||||+|||+......++|++|+.+|+.+.++++++++. .++||++|+|. ++..++
T Consensus 77 a~~a~~~~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~-----------~~~pv~vKir~G~~~~~~~~~ 145 (318)
T 1vhn_A 77 ARILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKS-----------VSGKFSVKTRLGWEKNEVEEI 145 (318)
T ss_dssp HHHHTTTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHH-----------CSSEEEEEEESCSSSCCHHHH
T ss_pred HHHHHHhCCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHh-----------hCCCEEEEecCCCChHHHHHH
Confidence 999976699999999999988888899999999999999999999998 67899999993 345699
Q ss_pred HHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 209 GAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 209 ~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
++.+++ |+|+|++|+|++.+. |+++++|+
T Consensus 146 a~~l~~~G~d~i~v~g~~~~~~--~~~~~~~~ 175 (318)
T 1vhn_A 146 YRILVEEGVDEVFIHTRTVVQS--FTGRAEWK 175 (318)
T ss_dssp HHHHHHTTCCEEEEESSCTTTT--TSSCCCGG
T ss_pred HHHHHHhCCCEEEEcCCCcccc--CCCCcCHH
Confidence 999999 999999999999887 46888885
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-20 Score=169.02 Aligned_cols=153 Identities=21% Similarity=0.290 Sum_probs=121.3
Q ss_pred ecccccccCCCccccccCchhhhhhhhcccceeeeCC---hhhHH----HhhhcccCCCCceeEEeecCCHHHHHHHHHH
Q psy7344 63 MGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD---WPLLT----ELGFKTRSHMCGHSLMFCGNDSKNLTEAAKL 135 (240)
Q Consensus 63 vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~d---~eli~----~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~ 135 (240)
++.+.+++||.+.+|..|+ ......|+.|...+.- ..++. ++. .+.+.+.|+++||+|++++++.+++++
T Consensus 2 l~nriv~APM~g~td~~~r--~~~r~~Gg~gli~te~~~~~~~~~~~~~~~~-~~~~~~~p~~vQL~g~~p~~~~~aA~~ 78 (350)
T 3b0p_A 2 LDPRLSVAPMVDRTDRHFR--FLVRQVSLGVRLYTEMTVDQAVLRGNRERLL-AFRPEEHPIALQLAGSDPKSLAEAARI 78 (350)
T ss_dssp CCCSEEECCCTTTSSHHHH--HHHHHHCSSSBEECCCEEHHHHHHSCHHHHH-CCCGGGCSEEEEEECSCHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCHHHHH--HHHHHcCCCCEEEeCCEEechhhcCCHHHHh-ccCCCCCeEEEEeCCCCHHHHHHHHHH
Confidence 3456788999999999997 4444455544433211 12222 222 234456899999999999999999999
Q ss_pred Hcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh--h------cHH
Q psy7344 136 AEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV--A------KRG 206 (240)
Q Consensus 136 le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~--~------~~~ 206 (240)
+++ |+|+||||+|||+....+.++|++|+.+|+.+.++++++++. .++||++|+|+ + ++.
T Consensus 79 a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~-----------v~~PV~vKiR~g~~~~~~~~~~~ 147 (350)
T 3b0p_A 79 GEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEA-----------VRVPVTVKMRLGLEGKETYRGLA 147 (350)
T ss_dssp HHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHH-----------CSSCEEEEEESCBTTCCCHHHHH
T ss_pred HHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHH-----------hCCceEEEEecCcCccccHHHHH
Confidence 965 799999999999988888999999999999999999999998 67899999993 2 468
Q ss_pred HHHHHHhC-CCCeEEEeccccccc
Q psy7344 207 HYGAYLQD-DWPLLTELGKMAMLV 229 (240)
Q Consensus 207 ~~~~~l~~-G~~~itih~R~~~~~ 229 (240)
++++.+++ |+|+|++|+|++.+.
T Consensus 148 ~~a~~l~~aG~d~I~V~~r~~~~g 171 (350)
T 3b0p_A 148 QSVEAMAEAGVKVFVVHARSALLA 171 (350)
T ss_dssp HHHHHHHHTTCCEEEEECSCBC--
T ss_pred HHHHHHHHcCCCEEEEecCchhcc
Confidence 89999999 999999999998764
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.1e-14 Score=128.26 Aligned_cols=96 Identities=14% Similarity=0.142 Sum_probs=81.8
Q ss_pred CCceeEEeecCCHHHHHHHHHHHc---c-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAE---P-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHC 189 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le---~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~ 189 (240)
+.|+++||.|.+++++.++++.++ + ++|+||||+|||+.. | |+.|+.+|+.+.++++++++.
T Consensus 126 ~~pvivsI~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~----g-g~~l~~~~e~~~~il~av~~~--------- 191 (354)
T 4ef8_A 126 KKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVP----G-KPQVAYDFDAMRQCLTAVSEV--------- 191 (354)
T ss_dssp TCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCST----T-SCCGGGSHHHHHHHHHHHHHH---------
T ss_pred CCcEEEEeccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCC----C-chhhccCHHHHHHHHHHHHHh---------
Confidence 579999999999999999999998 3 699999999999973 2 567889999999999999998
Q ss_pred CCCCeeeEEeeeh----hcHHHHHHHHhC-C-CCeEEEeccc
Q psy7344 190 DGNDINIGCPQMV----AKRGHYGAYLQD-D-WPLLTELGKM 225 (240)
Q Consensus 190 ~~~~~pvsvK~r~----~~~~~~~~~l~~-G-~~~itih~R~ 225 (240)
+++||++|+|. ..+.++++.+++ | +|+|++|+++
T Consensus 192 --~~~PV~vKi~p~~d~~~~~~~a~~~~~~Gg~d~I~~~NT~ 231 (354)
T 4ef8_A 192 --YPHSFGVKMPPYFDFAHFDAAAEILNEFPKVQFITCINSI 231 (354)
T ss_dssp --CCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEEECCCE
T ss_pred --hCCCeEEEecCCCCHHHHHHHHHHHHhCCCccEEEEeccc
Confidence 78999999992 234566777778 8 9999975543
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=9e-14 Score=125.85 Aligned_cols=104 Identities=9% Similarity=0.024 Sum_probs=83.9
Q ss_pred CCceeEEeecC-----CHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCC
Q psy7344 114 MCGHSLMFCGN-----DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPH 188 (240)
Q Consensus 114 ~~pvivqi~g~-----d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~ 188 (240)
..|+++||+++ +++++.++++.+.+.+|+|+||+|||+.. | ..++.+++.+.++++++++....+..
T Consensus 146 ~~pv~vniggn~~t~~~~~dy~~~~~~~~~~ad~ielNisCPn~~----G--~~~l~~~~~l~~ll~av~~~~~~~~~-- 217 (367)
T 3zwt_A 146 GLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTA----G--LRSLQGKAELRRLLTKVLQERDGLRR-- 217 (367)
T ss_dssp TCCEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTST----T--GGGGGSHHHHHHHHHHHHHHHHTSCG--
T ss_pred CceEEEEEecCCCCCcCHHHHHHHHHHHhhhCCEEEEECCCCCCC----C--ccccCCHHHHHHHHHHHHHHHhhccc--
Confidence 46999999886 68889999999988899999999999973 2 33679999999999998763110100
Q ss_pred CCCCCeeeEEeee--hh--cHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 189 CDGNDINIGCPQM--VA--KRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 189 ~~~~~~pvsvK~r--~~--~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
..++||++|++ ++ ++.++++.+++ |+|+|++|+||..
T Consensus 218 --~~~~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~ntt~~ 259 (367)
T 3zwt_A 218 --VHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVS 259 (367)
T ss_dssp --GGCCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSC
T ss_pred --cCCceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 04689999999 33 67889999999 9999999999954
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-13 Score=123.77 Aligned_cols=93 Identities=13% Similarity=0.119 Sum_probs=79.9
Q ss_pred CCCceeEEeecCCHHHHHHHHHHHcc-CC-CEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCC
Q psy7344 113 HMCGHSLMFCGNDSKNLTEAAKLAEP-HC-DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCD 190 (240)
Q Consensus 113 ~~~pvivqi~g~d~~~~~~aa~~le~-~~-d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~ 190 (240)
.+.|+++||+|.+++++.++++.+++ ++ |+||||+|||+.. | +++|+.||+.+.++++++++.
T Consensus 127 ~~~pvivsI~g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~----G-~~~l~~~~e~l~~il~av~~~---------- 191 (345)
T 3oix_A 127 DSKNHFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPNVP----G-XPQIAYDFETTDQILSEVFTY---------- 191 (345)
T ss_dssp TCCCCEEEECCSSHHHHHHHHHHHHHSSCCSEEEEECSCCCST----T-CCCGGGCHHHHHHHHHHHTTT----------
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHhccCCCcEEEEecCCCCcC----C-chhhcCCHHHHHHHHHHHHHH----------
Confidence 35799999999999999999999975 55 5999999999974 2 477889999999999999998
Q ss_pred CCCeeeEEeeeh-hcHHHHHHHHhC-CCCeEEE
Q psy7344 191 GNDINIGCPQMV-AKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 191 ~~~~pvsvK~r~-~~~~~~~~~l~~-G~~~iti 221 (240)
+++||++|++. .+..++++.+++ |+++|++
T Consensus 192 -~~~PV~vKi~p~~~~~~~a~~~~~aga~~i~~ 223 (345)
T 3oix_A 192 -FTKPLGIKLPPYFDIVHFDQAAAIFNXYPLTF 223 (345)
T ss_dssp -CCSCEEEEECCCCCHHHHHHHHHHHTTSCCSE
T ss_pred -hCCCeEEEECCCCCHHHHHHHHHHhCCCceEE
Confidence 78999999994 367888999888 8877653
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-14 Score=129.59 Aligned_cols=133 Identities=20% Similarity=0.191 Sum_probs=95.3
Q ss_pred cccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCC---ccccc-----c
Q psy7344 8 RIETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHC---DGIDI-----N 79 (240)
Q Consensus 8 ~~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~---~~~dl-----~ 79 (240)
+.+.+.|+|.||||+|||+.++++.++|++|+++++++.+++.++. +..+.|+++|.+....... +..++ .
T Consensus 77 ~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~-~~v~~PV~vKiR~g~~~~~~~~~~~~~a~~l~~ 155 (350)
T 3b0p_A 77 RIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMG-EAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAE 155 (350)
T ss_dssp HHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHH-HHCSSCEEEEEESCBTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHH-HHhCCceEEEEecCcCccccHHHHHHHHHHHHH
Confidence 3445678999999999999999999999999999999999999999 4668999987542111110 11111 4
Q ss_pred Cchhhhhhhhcccce-ee---------eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCC
Q psy7344 80 IGCPQMVAKRGHYGA-YL---------QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIG 148 (240)
Q Consensus 80 ~gC~~~i~~~g~~ga-~l---------~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~g 148 (240)
.| ...+.+|+++.. .+ ..+|+++.+++..+. +.||+++ +++.+..++.++++ |+|+|+++++
T Consensus 156 aG-~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~--~iPVian---GgI~s~eda~~~l~-GaD~V~iGRa 227 (350)
T 3b0p_A 156 AG-VKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFP--QLTFVTN---GGIRSLEEALFHLK-RVDGVMLGRA 227 (350)
T ss_dssp TT-CCEEEEECSCBC----------CCCCCHHHHHHHHHHCT--TSEEEEE---SSCCSHHHHHHHHT-TSSEEEECHH
T ss_pred cC-CCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCC--CCeEEEE---CCcCCHHHHHHHHh-CCCEEEECHH
Confidence 45 355667776532 11 136888888876541 3677765 77777777778887 8999999877
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-13 Score=126.83 Aligned_cols=107 Identities=11% Similarity=0.029 Sum_probs=79.4
Q ss_pred CceeEEeecCC-----HHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCC-
Q psy7344 115 CGHSLMFCGND-----SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPH- 188 (240)
Q Consensus 115 ~pvivqi~g~d-----~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~- 188 (240)
.|+++||++++ ++++.++++.+++.+|.|+||+|||+.. |..++++++.+.++++++++....+...+
T Consensus 182 ~~vgvnIg~nk~t~~~~~Dy~~~a~~l~~~ad~ieiNiScPNt~------Gl~~lq~~~~l~~ll~aV~~~~~~~~~~~~ 255 (415)
T 3i65_A 182 HIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTP------GLRDNQEAGKLKNIILSVKEEIDNLEKNNI 255 (415)
T ss_dssp CEEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCCC--------------CCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ceEEEEeccccCccccHHHHHHHHHHHHhhCCEEEEECCCCCCC------CcccccCHHHHHHHHHHHHHHHHhhccccc
Confidence 46889998886 7899999999988899999999999973 45678999999999999987521000000
Q ss_pred --------CCCCCee-eEEeee--hh--cHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 189 --------CDGNDIN-IGCPQM--VA--KRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 189 --------~~~~~~p-vsvK~r--~~--~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
-...++| |++|++ ++ ++.++++.+++ |+|+|++|+||..
T Consensus 256 ~~~~~~~~~~~~~~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~ 308 (415)
T 3i65_A 256 MNDEFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQ 308 (415)
T ss_dssp SCHHHHCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSC
T ss_pred ccccccccccCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcc
Confidence 0002578 999999 33 57899999999 9999999999974
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=6.9e-14 Score=124.20 Aligned_cols=142 Identities=18% Similarity=0.171 Sum_probs=104.9
Q ss_pred cccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCc--cccc-----cCch
Q psy7344 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCD--GIDI-----NIGC 82 (240)
Q Consensus 10 ~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~--~~dl-----~~gC 82 (240)
..+. +|.||||+|||+.++++.++|+.|+++++++.+++.++. +..+.|+++|... ++.. ..++ ..|
T Consensus 80 a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~-~~~~~pv~vKir~---G~~~~~~~~~a~~l~~~G- 153 (318)
T 1vhn_A 80 LSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELR-KSVSGKFSVKTRL---GWEKNEVEEIYRILVEEG- 153 (318)
T ss_dssp HTTT-CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHH-HHCSSEEEEEEES---CSSSCCHHHHHHHHHHTT-
T ss_pred HHHh-CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHH-HhhCCCEEEEecC---CCChHHHHHHHHHHHHhC-
Confidence 4455 999999999999999999999999999999999999998 4667899988542 2111 0111 445
Q ss_pred hhhhhhhccccee-e--eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhccc
Q psy7344 83 PQMVAKRGHYGAY-L--QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGH 158 (240)
Q Consensus 83 ~~~i~~~g~~ga~-l--~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g 158 (240)
...+++|+++... + ..+|+++.+++. +.||++. +++.+..++.+.++. ++|+|+++++
T Consensus 154 ~d~i~v~g~~~~~~~~~~~~~~~i~~i~~-----~ipVi~~---GgI~s~~da~~~l~~~gad~V~iGR~---------- 215 (318)
T 1vhn_A 154 VDEVFIHTRTVVQSFTGRAEWKALSVLEK-----RIPTFVS---GDIFTPEDAKRALEESGCDGLLVARG---------- 215 (318)
T ss_dssp CCEEEEESSCTTTTTSSCCCGGGGGGSCC-----SSCEEEE---SSCCSHHHHHHHHHHHCCSEEEESGG----------
T ss_pred CCEEEEcCCCccccCCCCcCHHHHHHHHc-----CCeEEEE---CCcCCHHHHHHHHHcCCCCEEEECHH----------
Confidence 3566777765431 1 245676666543 5787765 777777788888874 8999999887
Q ss_pred ccccccCCHHHHHHHHHHhhh
Q psy7344 159 YGAYLQDDWPLLTNLVYSPNM 179 (240)
Q Consensus 159 ~G~~l~~~p~~i~~iv~~~~~ 179 (240)
++.||+.+.++.+.+..
T Consensus 216 ----~l~~P~l~~~~~~~~~~ 232 (318)
T 1vhn_A 216 ----AIGRPWIFKQIKDFLRS 232 (318)
T ss_dssp ----GTTCTTHHHHHHHHHHH
T ss_pred ----HHhCcchHHHHHHHHhC
Confidence 56899999888876653
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-12 Score=115.49 Aligned_cols=96 Identities=10% Similarity=0.088 Sum_probs=84.3
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-CCC-EEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-HCD-GIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~~d-~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
+.|+++||.+.+++++.++++++++ ++| +|+||++||+. + .+..++.+++.+.++++++++.
T Consensus 93 ~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~---~--g~~~~g~~~e~~~~iv~~vr~~----------- 156 (311)
T 1jub_A 93 EGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNV---P--GEPQLAYDFEATEKLLKEVFTF----------- 156 (311)
T ss_dssp SSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCS---S--SCCCGGGCHHHHHHHHHHHTTT-----------
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCC---C--CcccccCCHHHHHHHHHHHHHh-----------
Confidence 5799999999999999999999976 789 99999999996 2 2566778999999999999988
Q ss_pred CCeeeEEeeeh----hcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 192 NDINIGCPQMV----AKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 192 ~~~pvsvK~r~----~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.++||++|++. ++..++++.+++ |+|+|++|+|+
T Consensus 157 ~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d~i~v~~~~ 195 (311)
T 1jub_A 157 FTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSI 195 (311)
T ss_dssp CCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCE
T ss_pred cCCCEEEEECCCCCHHHHHHHHHHHHHcCCcEEEecCCC
Confidence 68899999993 245678999999 99999999997
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-12 Score=131.87 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=92.0
Q ss_pred CCceeEEe-ecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMF-CGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi-~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
+.|+++++ .+.+++++.++++++++ ++|+|+||+|||+. ....++|++++.+|+.+.++++++++.
T Consensus 634 ~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~-~~~~~~G~~~~~~~~~~~~iv~~v~~~----------- 701 (1025)
T 1gte_A 634 DNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHG-MGERGMGLACGQDPELVRNICRWVRQA----------- 701 (1025)
T ss_dssp TSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCC-CC-----SBGGGCHHHHHHHHHHHHHH-----------
T ss_pred CCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC-CCCCCcccccccCHHHHHHHHHHHHHh-----------
Confidence 46888888 57799999999999964 89999999999997 345678999999999999999999998
Q ss_pred CCeeeEEeee--hhcHHHHHHHHhC-CCCeEEE----------------------ecccccccCCCCCCCCC
Q psy7344 192 NDINIGCPQM--VAKRGHYGAYLQD-DWPLLTE----------------------LGKMAMLVGILDNTGSW 238 (240)
Q Consensus 192 ~~~pvsvK~r--~~~~~~~~~~l~~-G~~~iti----------------------h~R~~~~~~~~~~~adw 238 (240)
+++||++|++ +.++.++++.+++ |+|+|++ |+|+..+. ++++++|
T Consensus 702 ~~~Pv~vK~~~~~~~~~~~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg--~sg~~~~ 771 (1025)
T 1gte_A 702 VQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGG--VSGTAIR 771 (1025)
T ss_dssp CSSCEEEEECSCSSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEE--EESGGGH
T ss_pred hCCceEEEeCCChHHHHHHHHHHHHcCCCEEEEeccccccccccccccccccccccccccCCC--CCcccch
Confidence 7899999999 5678999999999 9999999 77776665 3577665
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=5.6e-12 Score=111.32 Aligned_cols=96 Identities=14% Similarity=0.209 Sum_probs=84.4
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-CCC---EEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-HCD---GIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHC 189 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~~d---~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~ 189 (240)
+.|+++||.+.+++++.++++++++ ++| +|+||++||+. ++ +..++.+++.+.++++++++.
T Consensus 93 ~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~---~g--~~~~g~~~~~~~~ii~~vr~~--------- 158 (314)
T 2e6f_A 93 KKPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNV---PG--KPQVAYDFEAMRTYLQQVSLA--------- 158 (314)
T ss_dssp TCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCS---TT--CCCGGGSHHHHHHHHHHHHHH---------
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCC---CC--chhhcCCHHHHHHHHHHHHHh---------
Confidence 5799999999999999999999976 689 99999999996 22 456778999999999999998
Q ss_pred CCCCeeeEEeeeh----hcHHHHHHHHhC-C-CCeEEEeccc
Q psy7344 190 DGNDINIGCPQMV----AKRGHYGAYLQD-D-WPLLTELGKM 225 (240)
Q Consensus 190 ~~~~~pvsvK~r~----~~~~~~~~~l~~-G-~~~itih~R~ 225 (240)
.++||++|++. ++..++++.+++ | +|+|++|+|+
T Consensus 159 --~~~Pv~vK~~~~~~~~~~~~~a~~~~~aG~~d~i~v~~~~ 198 (314)
T 2e6f_A 159 --YGLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVNSV 198 (314)
T ss_dssp --HCSCEEEEECCCCCHHHHHHHHHHHHTCTTEEEEEECCCE
T ss_pred --cCCCEEEEECCCCCHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 67899999993 256778999999 9 9999999998
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-11 Score=114.27 Aligned_cols=107 Identities=11% Similarity=0.017 Sum_probs=84.9
Q ss_pred CceeEEeecCC-----HHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCC-
Q psy7344 115 CGHSLMFCGND-----SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPH- 188 (240)
Q Consensus 115 ~pvivqi~g~d-----~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~- 188 (240)
.|+++||++++ ++++.++++.+.+++|+|+||++||+.. |...+.+++.+.+|++++++....++..+
T Consensus 180 ~~vgvni~~~~~~~~~~~dy~~~a~~l~~~aD~ieiNiscPnt~------Glr~lq~~~~l~~il~~v~~~~~~~~~~~~ 253 (443)
T 1tv5_A 180 HIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTP------GLRDNQEAGKLKNIILSVKEEIDNLEKNNI 253 (443)
T ss_dssp CEEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTST------TGGGGGSHHHHHHHHHHHHHHHHHHC----
T ss_pred ceEEEEecCcccchHHHHHHHHHHHHHhcCCCEEEEeccCCCCc------ccccccCHHHHHHHHHHHHHHHhhhcccCc
Confidence 57999999987 8899999999988899999999999962 45678999999999999986521111000
Q ss_pred --------------------------------------CCCCCee-eEEeeeh--h--cHHHHHHHHhC-CCCeEEEecc
Q psy7344 189 --------------------------------------CDGNDIN-IGCPQMV--A--KRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 189 --------------------------------------~~~~~~p-vsvK~r~--~--~~~~~~~~l~~-G~~~itih~R 224 (240)
..+.++| |++|++. + +..++++.+++ |+|+|++|+|
T Consensus 254 ~~~g~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~nt 333 (443)
T 1tv5_A 254 MNDESTYNEDNKIVEKKNNFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNT 333 (443)
T ss_dssp ----------------------------------CCCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred cccccCHHHHHHHHHHhhcccccchhhhhhhhhcchhcccCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECC
Confidence 0014678 9999993 2 67889999999 9999999999
Q ss_pred ccc
Q psy7344 225 MAM 227 (240)
Q Consensus 225 ~~~ 227 (240)
|..
T Consensus 334 t~~ 336 (443)
T 1tv5_A 334 TTQ 336 (443)
T ss_dssp BSC
T ss_pred Ccc
Confidence 984
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=5.4e-11 Score=106.07 Aligned_cols=105 Identities=10% Similarity=-0.043 Sum_probs=82.2
Q ss_pred CCceeEEeecCC-------HHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccC
Q psy7344 114 MCGHSLMFCGND-------SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAE 186 (240)
Q Consensus 114 ~~pvivqi~g~d-------~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~ 186 (240)
+.|+++|+.+++ ++++.++++++.+++|+|+||++||+.. |...+.+++.+.++++++++.++.+++
T Consensus 133 ~~~~~v~i~~~~~~~i~~~~~~~~~aa~~~~~g~d~iein~~sP~~~------g~~~~~~~~~~~~il~~vr~~~~~~~~ 206 (336)
T 1f76_A 133 DGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYAGYIAINISSPNTP------GLRTLQYGEALDDLLTAIKNKQNDLQA 206 (336)
T ss_dssp CSEEEEEECCCTTSCGGGTHHHHHHHHHHHGGGCSEEEEECCCSSST------TGGGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCCcccccHHHHHHHHHHHhccCCEEEEEccCCCCC------CcccccCHHHHHHHHHHHHHHHHhhhh
Confidence 358999998887 8899999998877999999999999842 223467899999999999987200000
Q ss_pred CCCCCCCeeeEEeeeh----hcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 187 PHCDGNDINIGCPQMV----AKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 187 ~~~~~~~~pvsvK~r~----~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
. .+.++||++|++. +++.++++.+++ |+|+|++|+++.
T Consensus 207 ~--~g~~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~ 249 (336)
T 1f76_A 207 M--HHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTL 249 (336)
T ss_dssp H--HTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBC
T ss_pred c--ccccCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCcc
Confidence 0 0017899999993 367889999999 999999999874
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=8.2e-11 Score=103.27 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=85.2
Q ss_pred CCceeEEeecCCHHHHHHHHHHHc--cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAE--PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le--~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
+.|+++||++++++++.+++++++ .++|+|+||++||+.. ++ |..++.+++.+.++++++++.
T Consensus 98 ~~p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~--~g--~~~~g~~~~~~~eii~~v~~~----------- 162 (311)
T 1ep3_A 98 ELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVK--HG--GQAFGTDPEVAAALVKACKAV----------- 162 (311)
T ss_dssp TSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGG--GT--TEEGGGCHHHHHHHHHHHHHH-----------
T ss_pred CCcEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCC--Cc--hhhhcCCHHHHHHHHHHHHHh-----------
Confidence 579999999999999999999997 5799999999999842 22 455677999999999999987
Q ss_pred CCeeeEEeee--hhcHHHHHHHHhC-CCCeEEE---------eccccc
Q psy7344 192 NDINIGCPQM--VAKRGHYGAYLQD-DWPLLTE---------LGKMAM 227 (240)
Q Consensus 192 ~~~pvsvK~r--~~~~~~~~~~l~~-G~~~iti---------h~R~~~ 227 (240)
.++||++|++ +.+..++++.+++ |+|+|++ |.|++.
T Consensus 163 ~~~pv~vk~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~ 210 (311)
T 1ep3_A 163 SKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQ 210 (311)
T ss_dssp CSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCS
T ss_pred cCCCEEEEECCChHHHHHHHHHHHHcCCCEEEEeCCCcccccCcccCC
Confidence 6789999998 4566899999999 9999999 777654
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=5.7e-10 Score=99.75 Aligned_cols=90 Identities=16% Similarity=0.210 Sum_probs=74.2
Q ss_pred HHHHHHHHHHc-cCCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAE-PHCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le-~~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+++.++|+.+. .|+|+|+||.+| |........+|..+..++..+.+++++++++ .++||
T Consensus 144 ~~~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~-----------v~~pv 212 (338)
T 1z41_A 144 QEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQV-----------WDGPL 212 (338)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHH-----------CCSCE
T ss_pred HHHHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHH-----------cCCcE
Confidence 56788888775 489999999998 6543334557777888899999999999998 67899
Q ss_pred EEeeeh----------hcHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 197 GCPQMV----------AKRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 197 svK~r~----------~~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
++|++. +++.++++.|++ |+|+|++|+++..
T Consensus 213 ~vris~~~~~~~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~ 254 (338)
T 1z41_A 213 FVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALV 254 (338)
T ss_dssp EEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred EEEecCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccc
Confidence 999983 356789999999 9999999999754
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-10 Score=104.65 Aligned_cols=142 Identities=9% Similarity=0.023 Sum_probs=89.7
Q ss_pred CCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeeccccccc--CCCccccc--cCchhhhhh-
Q psy7344 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAE--PHCDGIDI--NIGCPQMVA- 87 (240)
Q Consensus 13 ~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~la--p~~~~~dl--~~gC~~~i~- 87 (240)
.++|.||||++||..+ + |..|++||+++.+++.++. +..+.|++||..-.+. .+.+..++ .+|....++
T Consensus 154 ~g~d~ielNisCPn~~---g--g~~l~~~~e~~~~il~av~-~~~~~PV~vKi~p~~d~~~~~~~a~~~~~~Gg~d~I~~ 227 (354)
T 4ef8_A 154 EKGVILELNLSCPNVP---G--KPQVAYDFDAMRQCLTAVS-EVYPHSFGVKMPPYFDFAHFDAAAEILNEFPKVQFITC 227 (354)
T ss_dssp HHCCEEEEECSSCCST---T--SCCGGGSHHHHHHHHHHHH-HHCCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEEE
T ss_pred cCCCEEEEeCCCCCCC---C--chhhccCHHHHHHHHHHHH-HhhCCCeEEEecCCCCHHHHHHHHHHHHhCCCccEEEE
Confidence 4689999999999975 2 6889999999999999999 5778999998432111 00000100 121011111
Q ss_pred -----------hhcc---------cceee-----eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCE
Q psy7344 88 -----------KRGH---------YGAYL-----QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDG 142 (240)
Q Consensus 88 -----------~~g~---------~ga~l-----~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~ 142 (240)
.|++ +|.+. ..+|+++.++.... .+.|++.. +++.+..++.+++..|+|+
T Consensus 228 ~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~~~--~~ipII~~---GGI~s~~da~~~l~aGAd~ 302 (354)
T 4ef8_A 228 INSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRC--PGKLIFGC---GGVYTGEDAFLHVLAGASM 302 (354)
T ss_dssp CCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHC--TTSEEEEE---SCCCSHHHHHHHHHHTEEE
T ss_pred ecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHHhC--CCCCEEEE---CCcCCHHHHHHHHHcCCCE
Confidence 1111 11111 12366666665542 13676655 7888888899999889999
Q ss_pred EEecCCCchhhhhcccccccccCC-HHHHHHHHHHhhh
Q psy7344 143 IDINIGCPQMVAKRGHYGAYLQDD-WPLLTNLVYSPNM 179 (240)
Q Consensus 143 Idin~gCP~~~~~~~g~G~~l~~~-p~~i~~iv~~~~~ 179 (240)
|+++++ ++.+ |+.+.+|.+.++.
T Consensus 303 V~vgra--------------~l~~GP~~~~~i~~~l~~ 326 (354)
T 4ef8_A 303 VQVGTA--------------LQEEGPSIFERLTSELLG 326 (354)
T ss_dssp EEECHH--------------HHHHCTTHHHHHHHHHHH
T ss_pred EEEhHH--------------HHHhCHHHHHHHHHHHHH
Confidence 999776 3345 7777777776654
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=4.8e-09 Score=95.15 Aligned_cols=93 Identities=17% Similarity=0.143 Sum_probs=73.1
Q ss_pred HHHHHHHHHHc-cCCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAE-PHCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le-~~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+++.++|+.+. .|+|+|+||.+| |........+|..+..++..+.++++++++++ +.+ ||
T Consensus 167 ~~f~~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~av---------g~~-~V 236 (376)
T 1icp_A 167 NEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEI---------GSD-RV 236 (376)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHH---------CGG-GE
T ss_pred HHHHHHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHh---------cCC-ce
Confidence 47788888775 489999999998 55333345577778888999999999999983 124 99
Q ss_pred EEeeehh-------------cHHHHHHHHhC-CCCeEEEeccccccc
Q psy7344 197 GCPQMVA-------------KRGHYGAYLQD-DWPLLTELGKMAMLV 229 (240)
Q Consensus 197 svK~r~~-------------~~~~~~~~l~~-G~~~itih~R~~~~~ 229 (240)
++|++.. ++.++++.|++ |+|+|++|+|+..+.
T Consensus 237 ~vrls~~~~~~g~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~ 283 (376)
T 1icp_A 237 GIRISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTA 283 (376)
T ss_dssp EEEECTTCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC-
T ss_pred EEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcccCC
Confidence 9999821 25789999999 999999999986653
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4e-09 Score=95.64 Aligned_cols=93 Identities=14% Similarity=0.098 Sum_probs=72.3
Q ss_pred HHHHHHHHHHcc-CCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+++.++|+.+.+ |+|+|+||.+| |........+|..+..++..+.++++++++++ +.+ ||
T Consensus 166 ~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~av---------g~~-~v 235 (377)
T 2r14_A 166 EDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVF---------GPE-RV 235 (377)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHH---------CGG-GE
T ss_pred HHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHc---------CCC-cE
Confidence 578888888754 89999999998 76443445677778889999999999999983 124 99
Q ss_pred EEeeeh-------------hcHHHHHHHHhC-CCCeEEEeccccccc
Q psy7344 197 GCPQMV-------------AKRGHYGAYLQD-DWPLLTELGKMAMLV 229 (240)
Q Consensus 197 svK~r~-------------~~~~~~~~~l~~-G~~~itih~R~~~~~ 229 (240)
++|++. +++.++++.|++ |+|+|++|+|+..+.
T Consensus 236 ~vrls~~~~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~ 282 (377)
T 2r14_A 236 GIRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGG 282 (377)
T ss_dssp EEEECTTCCCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC----
T ss_pred EEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 999973 236788999999 999999999986553
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=4e-09 Score=94.39 Aligned_cols=91 Identities=15% Similarity=0.197 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHcc-CCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 126 SKNLTEAAKLAEP-HCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 126 ~~~~~~aa~~le~-~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++++.++|+.+.+ |+|+||||.+| |........||..+..++..+.+++++++++ .+.|
T Consensus 143 i~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~-----------v~~p 211 (340)
T 3gr7_A 143 VQAFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREV-----------WDGP 211 (340)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHH-----------CCSC
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHh-----------cCCc
Confidence 4567778887765 89999999996 7643344567777888899999999999998 6889
Q ss_pred eEEeeeh----------hcHHHHHHHHhC-CCCeEEEe-ccccc
Q psy7344 196 IGCPQMV----------AKRGHYGAYLQD-DWPLLTEL-GKMAM 227 (240)
Q Consensus 196 vsvK~r~----------~~~~~~~~~l~~-G~~~itih-~R~~~ 227 (240)
|++|++. +++.++++.|++ |+|+|++| +++..
T Consensus 212 v~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~ 255 (340)
T 3gr7_A 212 LFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVP 255 (340)
T ss_dssp EEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSC
T ss_pred eEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccC
Confidence 9999992 467899999999 99999999 45444
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.8e-09 Score=96.77 Aligned_cols=147 Identities=9% Similarity=0.028 Sum_probs=92.2
Q ss_pred cccccCCC-CeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeeccccccc----------CCCccc
Q psy7344 8 RIETEPHC-DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAE----------PHCDGI 76 (240)
Q Consensus 8 ~~~~~~~~-d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~la----------p~~~~~ 76 (240)
|.+.+.++ |.||||++||..+ .++.|++||+++.+++.++. +..+.|++||..-... -.++.+
T Consensus 148 ~~l~~~g~~d~ielNisCPn~~-----G~~~l~~~~e~l~~il~av~-~~~~~PV~vKi~p~~~~~~~a~~~~~aga~~i 221 (345)
T 3oix_A 148 XMVEASKYQGLVELNLSCPNVP-----GXPQIAYDFETTDQILSEVF-TYFTKPLGIKLPPYFDIVHFDQAAAIFNXYPL 221 (345)
T ss_dssp HHHHHSSCCSEEEEECSCCCST-----TCCCGGGCHHHHHHHHHHHT-TTCCSCEEEEECCCCCHHHHHHHHHHHTTSCC
T ss_pred HHHhccCCCcEEEEecCCCCcC-----CchhhcCCHHHHHHHHHHHH-HHhCCCeEEEECCCCCHHHHHHHHHHhCCCce
Confidence 44554565 5999999999976 25889999999999999999 5778999998431110 001111
Q ss_pred cc----c-Cchhhhhhhhc---------ccceee-eCC----hhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHc
Q psy7344 77 DI----N-IGCPQMVAKRG---------HYGAYL-QDD----WPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAE 137 (240)
Q Consensus 77 dl----~-~gC~~~i~~~g---------~~ga~l-~~d----~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le 137 (240)
++ | .| ..+.+|. .+|-+. ... +++++++...+. .+.|++.. +++.+..++.++++
T Consensus 222 ~~int~nt~g--~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~~~~~-~~ipIIg~---GGI~s~~da~~~l~ 295 (345)
T 3oix_A 222 TFVNCINSIG--NGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLN-PSIQIIGT---GGVXTGRDAFEHIL 295 (345)
T ss_dssp SEEEECCCEE--EEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHHTTSC-TTSEEEEE---SSCCSHHHHHHHHH
T ss_pred EEEEeecccc--cceeeccCccccccccccCCcCCccccHHHHHHHHHHHHHcC-CCCcEEEE---CCCCChHHHHHHHH
Confidence 10 0 00 0001111 122222 112 456666655442 13676655 88888889999998
Q ss_pred cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhh
Q psy7344 138 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM 179 (240)
Q Consensus 138 ~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~ 179 (240)
.|+|+|+++++- +..+|+.+.++.+.++.
T Consensus 296 aGAd~V~igra~-------------~~~gP~~~~~i~~~L~~ 324 (345)
T 3oix_A 296 CGASMVQIGTAL-------------HQEGPQIFKRITKELXA 324 (345)
T ss_dssp HTCSEEEESHHH-------------HHHCTHHHHHHHHHHHH
T ss_pred hCCCEEEEChHH-------------HhcChHHHHHHHHHHHH
Confidence 899999997651 24688888888877655
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=98.80 E-value=2.3e-09 Score=96.88 Aligned_cols=138 Identities=12% Similarity=0.067 Sum_probs=90.1
Q ss_pred CCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhccc-------CCCceeecccccccCCCc---cccc----
Q psy7344 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVS-------KNGPLFMGPLFIAEPHCD---GIDI---- 78 (240)
Q Consensus 13 ~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~-------~~~p~~vk~~~~lap~~~---~~dl---- 78 (240)
.++|.||||++||..+ |..+|++++.+.+++.++. +. .+.|++||.. |..+ ..++
T Consensus 175 ~~ad~ielNisCPn~~------G~~~l~~~~~l~~ll~av~-~~~~~~~~~~~~Pv~vKi~----p~~~~~~~~~ia~~~ 243 (367)
T 3zwt_A 175 PLADYLVVNVSSPNTA------GLRSLQGKAELRRLLTKVL-QERDGLRRVHRPAVLVKIA----PDLTSQDKEDIASVV 243 (367)
T ss_dssp GGCSEEEEECCCTTST------TGGGGGSHHHHHHHHHHHH-HHHHTSCGGGCCEEEEEEC----SCCCHHHHHHHHHHH
T ss_pred hhCCEEEEECCCCCCC------CccccCCHHHHHHHHHHHH-HHHhhccccCCceEEEEeC----CCCCHHHHHHHHHHH
Confidence 4689999999999885 3457899999999999886 22 4689999843 2221 1111
Q ss_pred -cCchhhhhhhhccc---------------ceee-eC----ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHc
Q psy7344 79 -NIGCPQMVAKRGHY---------------GAYL-QD----DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAE 137 (240)
Q Consensus 79 -~~gC~~~i~~~g~~---------------ga~l-~~----d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le 137 (240)
..| ...++.|+++ |.+. .. .+++++++...+. ...|++.. +++.+..++.++++
T Consensus 244 ~~aG-adgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~-~~ipvI~~---GGI~s~~da~~~l~ 318 (367)
T 3zwt_A 244 KELG-IDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQ-GRVPIIGV---GGVSSGQDALEKIR 318 (367)
T ss_dssp HHHT-CCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTT-TCSCEEEE---SSCCSHHHHHHHHH
T ss_pred HHcC-CCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcC-CCceEEEE---CCCCCHHHHHHHHH
Confidence 333 2334444333 1111 11 1356666665542 13677665 78888888889988
Q ss_pred cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhh
Q psy7344 138 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM 179 (240)
Q Consensus 138 ~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~ 179 (240)
.|+|+|+++++. +..+|+.+.++.+.+..
T Consensus 319 ~GAd~V~vgra~-------------l~~gP~~~~~i~~~l~~ 347 (367)
T 3zwt_A 319 AGASLVQLYTAL-------------TFWGPPVVGKVKRELEA 347 (367)
T ss_dssp HTCSEEEESHHH-------------HHHCTHHHHHHHHHHHH
T ss_pred cCCCEEEECHHH-------------HhcCcHHHHHHHHHHHH
Confidence 899999997761 12468888888877655
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=98.80 E-value=8.1e-09 Score=93.21 Aligned_cols=92 Identities=14% Similarity=0.085 Sum_probs=71.9
Q ss_pred HHHHHHHHHHc-cCCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAE-PHCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le-~~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+++.++|+.+. .|+|+|+||.+| |........+|..+..++..+.++++++++++ +.+ ||
T Consensus 161 ~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~v---------g~~-~v 230 (364)
T 1vyr_A 161 NDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEW---------SAD-RI 230 (364)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHS---------CGG-GE
T ss_pred HHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhc---------CCC-cE
Confidence 57788888775 489999999998 54332334577778888999999999999983 124 99
Q ss_pred EEeeehh--------------cHHHHHHHHhC-CCCeEEEecccccc
Q psy7344 197 GCPQMVA--------------KRGHYGAYLQD-DWPLLTELGKMAML 228 (240)
Q Consensus 197 svK~r~~--------------~~~~~~~~l~~-G~~~itih~R~~~~ 228 (240)
++|++.. ++.++++.|++ |+|+|++|+|+..+
T Consensus 231 ~vrls~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~ 277 (364)
T 1vyr_A 231 GIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAG 277 (364)
T ss_dssp EEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTB
T ss_pred EEEEccccccccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccC
Confidence 9999932 24668999999 99999999987644
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-08 Score=93.12 Aligned_cols=92 Identities=15% Similarity=0.109 Sum_probs=74.2
Q ss_pred HHHHHHHHHHc-cCCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAE-PHCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le-~~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+++.++|+.+. .|+|+||||.+| |........+|..+..++..+.+|++++++++ .+.||
T Consensus 171 ~~f~~AA~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~av----------g~~~V 240 (402)
T 2hsa_B 171 EDYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAI----------GADRV 240 (402)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHH----------CGGGE
T ss_pred HHHHHHHHHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHh----------CCCcE
Confidence 57888888875 489999999997 77443445677778888999999999999983 22389
Q ss_pred EEeeeh-------------hcHHHHHHHHhC-C------CCeEEEecccccc
Q psy7344 197 GCPQMV-------------AKRGHYGAYLQD-D------WPLLTELGKMAML 228 (240)
Q Consensus 197 svK~r~-------------~~~~~~~~~l~~-G------~~~itih~R~~~~ 228 (240)
++|++. +++.++++.|++ | +|+|++|+|+..+
T Consensus 241 ~vRls~~~~~~g~~~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~ 292 (402)
T 2hsa_B 241 GVRVSPAIDHLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVA 292 (402)
T ss_dssp EEEECSSCCSTTCCCSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCT
T ss_pred EEEeccccccCCCCCCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCcccc
Confidence 999982 236789999999 9 9999999998655
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-08 Score=92.32 Aligned_cols=90 Identities=18% Similarity=0.171 Sum_probs=71.1
Q ss_pred HHHHHHHHHHc-cCCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAE-PHCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le-~~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+++.++|+.+. .|+|+|+||.+| |........+|..+..++..+.++++++++.+ +.+ ||
T Consensus 161 ~~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~v---------g~~-pv 230 (365)
T 2gou_A 161 ADYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAI---------GAE-RV 230 (365)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHH---------CGG-GE
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHc---------CCC-cE
Confidence 67888888775 489999999998 55333344577778888899999999999973 124 99
Q ss_pred EEeeehh-------------cHHHHHHHHhC-CCCeEEEecccc
Q psy7344 197 GCPQMVA-------------KRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 197 svK~r~~-------------~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
++|++.. ++.++++.|++ |+|+|++|+|+.
T Consensus 231 ~vris~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~ 274 (365)
T 2gou_A 231 GVRLAPLTTLNGTVDADPILTYTAAAALLNKHRIVYLHIAEVDW 274 (365)
T ss_dssp EEEECSSCCTTSCCCSSHHHHHHHHHHHHHHTTCSEEEEECCBT
T ss_pred EEEEccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 9999931 35678999999 999999999874
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.7e-08 Score=97.60 Aligned_cols=93 Identities=14% Similarity=0.134 Sum_probs=74.9
Q ss_pred HHHHHHHHHHc-cCCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAE-PHCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le-~~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+++.++|+.+. .|+|+|+||.|| |........||..+..++..+.++++++++++ +.++||
T Consensus 141 ~~~~~aA~~a~~aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~v---------G~~~~v 211 (671)
T 1ps9_A 141 DNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERV---------GNDFII 211 (671)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHH---------CSSSEE
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHc---------CCCceE
Confidence 57888888775 489999999998 54333345677778888999999999999983 247899
Q ss_pred EEeeeh----------hcHHHHHHHHhC-CCCeEEEecccccc
Q psy7344 197 GCPQMV----------AKRGHYGAYLQD-DWPLLTELGKMAML 228 (240)
Q Consensus 197 svK~r~----------~~~~~~~~~l~~-G~~~itih~R~~~~ 228 (240)
++|++. +++.++++.|++ |+|+|++|+|+.++
T Consensus 212 ~vrls~~~~~~~g~~~~~~~~~a~~l~~~g~d~i~v~~~~~~~ 254 (671)
T 1ps9_A 212 IYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEA 254 (671)
T ss_dssp EEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTC
T ss_pred EEEECccccCCCCCCHHHHHHHHHHHHhcCCCEEEcCCCcccc
Confidence 999992 356789999999 99999999988654
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.6e-08 Score=89.37 Aligned_cols=93 Identities=14% Similarity=0.178 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHcc-CCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 126 SKNLTEAAKLAEP-HCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 126 ~~~~~~aa~~le~-~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++++.++|+.+.+ |+|+|+||.+| |........||..+..++..+.++++++++++ +.++|
T Consensus 151 i~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~av---------G~d~p 221 (349)
T 3hgj_A 151 LQAFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVV---------PRELP 221 (349)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHS---------CTTSC
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHh---------cCCce
Confidence 4567777777754 89999999999 77544455678778888889999999999982 23789
Q ss_pred eEEeeeh----------hcHHHHHHHHhC-CCCeEEEe-ccccc
Q psy7344 196 IGCPQMV----------AKRGHYGAYLQD-DWPLLTEL-GKMAM 227 (240)
Q Consensus 196 vsvK~r~----------~~~~~~~~~l~~-G~~~itih-~R~~~ 227 (240)
|++|++. +++.++++.|++ |+|+|.+| +++..
T Consensus 222 V~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~ 265 (349)
T 3hgj_A 222 LFVRVSATDWGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVL 265 (349)
T ss_dssp EEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCS
T ss_pred EEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCc
Confidence 9999993 357889999999 99999999 56543
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2e-08 Score=88.30 Aligned_cols=146 Identities=10% Similarity=-0.015 Sum_probs=91.6
Q ss_pred cccccCCCC-eecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCcccc-----ccCc
Q psy7344 8 RIETEPHCD-GIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGID-----INIG 81 (240)
Q Consensus 8 ~~~~~~~~d-~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~d-----l~~g 81 (240)
+.+.+.++| .|+||++||.. + .+..+..+++.+.+++.++. +..+.|+++|....+.. .+..+ ...|
T Consensus 113 ~~~~~~g~d~~iein~~~P~~---~--g~~~~g~~~e~~~~iv~~vr-~~~~~Pv~vKi~~~~~~-~~~~~~a~~~~~~G 185 (311)
T 1jub_A 113 KKIQESDFSGITELNLSCPNV---P--GEPQLAYDFEATEKLLKEVF-TFFTKPLGVKLPPYFDL-VHFDIMAEILNQFP 185 (311)
T ss_dssp HHHHHSCCCSEEEEESCCCCS---S--SCCCGGGCHHHHHHHHHHHT-TTCCSCEEEEECCCCSH-HHHHHHHHHHTTSC
T ss_pred HHHHhcCCCeEEEEeccCCCC---C--CcccccCCHHHHHHHHHHHH-HhcCCCEEEEECCCCCH-HHHHHHHHHHHHcC
Confidence 445567789 99999999996 2 36778889999999999998 45678999874211100 00000 1223
Q ss_pred hhhhhhhhcccc-------------------e-eeeC------ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHH
Q psy7344 82 CPQMVAKRGHYG-------------------A-YLQD------DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKL 135 (240)
Q Consensus 82 C~~~i~~~g~~g-------------------a-~l~~------d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~ 135 (240)
...+.++++++ . .+.. .+++++++...+. .+.|++.. +++.+..++.++
T Consensus 186 -~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~-~~ipvi~~---GGI~~~~da~~~ 260 (311)
T 1jub_A 186 -LTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLK-PEIQIIGT---GGIETGQDAFEH 260 (311)
T ss_dssp -CCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSC-TTSEEEEE---SSCCSHHHHHHH
T ss_pred -CcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcC-CCCCEEEE---CCCCCHHHHHHH
Confidence 22333333221 0 1111 1455555554432 14676655 777777788888
Q ss_pred HccCCCEEEecCCCchhhhhcccccccccC-CHHHHHHHHHHhhh
Q psy7344 136 AEPHCDGIDINIGCPQMVAKRGHYGAYLQD-DWPLLTNLVYSPNM 179 (240)
Q Consensus 136 le~~~d~Idin~gCP~~~~~~~g~G~~l~~-~p~~i~~iv~~~~~ 179 (240)
++.|+|+|+++.+ ++. +|+.+.++.+.++.
T Consensus 261 l~~GAd~V~vg~~--------------~l~~~p~~~~~i~~~l~~ 291 (311)
T 1jub_A 261 LLCGATMLQIGTA--------------LHKEGPAIFDRIIKELEE 291 (311)
T ss_dssp HHHTCSEEEECHH--------------HHHHCTHHHHHHHHHHHH
T ss_pred HHcCCCEEEEchH--------------HHhcCcHHHHHHHHHHHH
Confidence 8779999999666 443 88888888876654
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=6.8e-09 Score=94.99 Aligned_cols=137 Identities=13% Similarity=0.043 Sum_probs=82.1
Q ss_pred CCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhccc--------------------CCCc-eeecccccccC
Q psy7344 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVS--------------------KNGP-LFMGPLFIAEP 71 (240)
Q Consensus 13 ~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~--------------------~~~p-~~vk~~~~lap 71 (240)
.++|.|+||++||..+ |..++++++.+.+++.++. +. .+.| ++||.. |
T Consensus 210 ~~ad~ieiNiScPNt~------Gl~~lq~~~~l~~ll~aV~-~~~~~~~~~~~~~~~~~~~~~~~~~P~V~VKi~----p 278 (415)
T 3i65_A 210 RYADYIAINVSSPNTP------GLRDNQEAGKLKNIILSVK-EEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLA----P 278 (415)
T ss_dssp GGCSEEEEECCCCC--------------CCHHHHHHHHHHH-HHHHHHHHHCCSCHHHHCCSSSSSCCEEEEEEC----S
T ss_pred hhCCEEEEECCCCCCC------CcccccCHHHHHHHHHHHH-HHHHhhcccccccccccccccCCCCCeEEEEec----C
Confidence 3489999999999975 6779999999999999987 33 2578 888842 2
Q ss_pred CCc---cccc-----cCchhhhhhhhcccc-------------eee-eCC----hhhHHHhhhcccCCCCceeEEeecCC
Q psy7344 72 HCD---GIDI-----NIGCPQMVAKRGHYG-------------AYL-QDD----WPLLTELGFKTRSHMCGHSLMFCGND 125 (240)
Q Consensus 72 ~~~---~~dl-----~~gC~~~i~~~g~~g-------------a~l-~~d----~eli~~i~~~~~~~~~pvivqi~g~d 125 (240)
..+ ..++ ..| ...++.++++. .+. ... +++++++...+. ...|+|.. ++
T Consensus 279 d~~~~~i~~iA~~a~~aG-aDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~-~~iPIIg~---GG 353 (415)
T 3i65_A 279 DLNQEQKKEIADVLLETN-IDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTN-KQIPIIAS---GG 353 (415)
T ss_dssp CCCHHHHHHHHHHHHHHT-CSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTT-TCSCEEEC---SS
T ss_pred CCCHHHHHHHHHHHHHcC-CcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhC-CCCCEEEE---CC
Confidence 211 1111 223 23333443332 111 111 255666655442 13676654 88
Q ss_pred HHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCC-HHHHHHHHHHhhh
Q psy7344 126 SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD-WPLLTNLVYSPNM 179 (240)
Q Consensus 126 ~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~-p~~i~~iv~~~~~ 179 (240)
+.+..++.+++..|+|+|+++.+ ++.+ |+.+.+|.+.+.+
T Consensus 354 I~s~eDa~e~l~aGAd~VqIgra--------------~l~~GP~~~~~i~~~L~~ 394 (415)
T 3i65_A 354 IFSGLDALEKIEAGASVCQLYSC--------------LVFNGMKSAVQIKRELNH 394 (415)
T ss_dssp CCSHHHHHHHHHHTEEEEEESHH--------------HHHHGGGHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCEEEEcHH--------------HHhcCHHHHHHHHHHHHH
Confidence 88888999999889999999776 2333 6677777776654
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=2.5e-08 Score=100.83 Aligned_cols=146 Identities=11% Similarity=0.089 Sum_probs=89.7
Q ss_pred ccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCccccc-----cCchh
Q psy7344 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDI-----NIGCP 83 (240)
Q Consensus 9 ~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~dl-----~~gC~ 83 (240)
.+.+.++|.|+||++||.. ..+.++|++++++++++.+++.++. +..+.|+++|... ...+..++ ..| .
T Consensus 656 ~~~~~g~d~iein~~~P~~-~~~~~~G~~~~~~~~~~~~iv~~v~-~~~~~Pv~vK~~~---~~~~~~~~a~~~~~~G-~ 729 (1025)
T 1gte_A 656 KAEASGADALELNLSCPHG-MGERGMGLACGQDPELVRNICRWVR-QAVQIPFFAKLTP---NVTDIVSIARAAKEGG-A 729 (1025)
T ss_dssp HHHHTTCSEEEEECCCBCC-CC-----SBGGGCHHHHHHHHHHHH-HHCSSCEEEEECS---CSSCHHHHHHHHHHHT-C
T ss_pred HHHhcCCCEEEEECCCCCC-CCCCCcccccccCHHHHHHHHHHHH-HhhCCceEEEeCC---ChHHHHHHHHHHHHcC-C
Confidence 3445789999999999998 5566799999999999999999998 4668999987421 11111110 111 1
Q ss_pred hhhhh----------------------hcccce--ee-eCCh----hhHHHhhhcccCCCCceeEEeecCCHHHHHHHHH
Q psy7344 84 QMVAK----------------------RGHYGA--YL-QDDW----PLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAK 134 (240)
Q Consensus 84 ~~i~~----------------------~g~~ga--~l-~~d~----eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~ 134 (240)
..+.. |+++.. +. ...| +++.++...+ .+.|++.. +++.+..++.+
T Consensus 730 d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~~~~~~~~~~v~~v~~~~--~~ipvi~~---GGI~s~~da~~ 804 (1025)
T 1gte_A 730 DGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARAL--PGFPILAT---GGIDSAESGLQ 804 (1025)
T ss_dssp SEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHS--TTCCEEEE---SSCCSHHHHHH
T ss_pred CEEEEeccccccccccccccccccccccccccCCCCCcccchhHHHHHHHHHHHHc--CCCCEEEe---cCcCCHHHHHH
Confidence 11111 443222 22 2233 4555655443 13677665 88888888999
Q ss_pred HHccCCCEEEecCCCchhhhhccccccccc-CCHHHHHHHHHHhhh
Q psy7344 135 LAEPHCDGIDINIGCPQMVAKRGHYGAYLQ-DDWPLLTNLVYSPNM 179 (240)
Q Consensus 135 ~le~~~d~Idin~gCP~~~~~~~g~G~~l~-~~p~~i~~iv~~~~~ 179 (240)
++..|+|+|+++++ ++ ..|..+.++.+.++.
T Consensus 805 ~l~~Ga~~v~vg~~--------------~l~~~~~~~~~~~~~l~~ 836 (1025)
T 1gte_A 805 FLHSGASVLQVCSA--------------VQNQDFTVIQDYCTGLKA 836 (1025)
T ss_dssp HHHTTCSEEEESHH--------------HHTSCTTHHHHHHHHHHH
T ss_pred HHHcCCCEEEEeec--------------cccCCccHHHHHHHHHHH
Confidence 98889999999765 22 255556666555544
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=6.3e-08 Score=87.53 Aligned_cols=110 Identities=7% Similarity=-0.073 Sum_probs=77.4
Q ss_pred CCceeEEeec-CCHHHHHHHHHHHcc-CCCEEEecCCCchh-----------------hhhc-----ccccccc---cC-
Q psy7344 114 MCGHSLMFCG-NDSKNLTEAAKLAEP-HCDGIDINIGCPQM-----------------VAKR-----GHYGAYL---QD- 165 (240)
Q Consensus 114 ~~pvivqi~g-~d~~~~~~aa~~le~-~~d~Idin~gCP~~-----------------~~~~-----~g~G~~l---~~- 165 (240)
+.|+.+||.+ .|.+...++++.++. |+++|+||++||.. .... .+.|+.+ +.
T Consensus 132 ~~~~~~QLy~~~d~~~~~~~~~ra~~aG~~ai~it~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~g~~l~~~~~~ 211 (368)
T 2nli_A 132 GGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMSLNNIYGA 211 (368)
T ss_dssp TCCEEEEECCBSSHHHHHHHHHHHHHTTCSCEEEESBCC---CBC--------CCSCCHHHHHHHTTSGGGC-----CTT
T ss_pred CCCEEEEEeccCCHHHHHHHHHHHHHCCCCEEEEcCCCCcccchhHHHhhcccCcchhhhhhcccccCCCCchHHhhhhc
Confidence 4689999976 788888899988865 89999999999972 1110 1234443 22
Q ss_pred -CHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCC
Q psy7344 166 -DWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSW 238 (240)
Q Consensus 166 -~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw 238 (240)
|+....+.++++++. +++||++|.- .+.+.++.+++ |+|+|+++++...|.+ .++++|
T Consensus 212 ~d~~~~~~~i~~lr~~-----------~~~PvivK~v--~~~e~a~~a~~~Gad~I~vs~~ggr~~~--~g~~~~ 271 (368)
T 2nli_A 212 SKQKISPRDIEEIAGH-----------SGLPVFVKGI--QHPEDADMAIKRGASGIWVSNHGARQLY--EAPGSF 271 (368)
T ss_dssp BCSBCCHHHHHHHHHH-----------SSSCEEEEEE--CSHHHHHHHHHTTCSEEEECCGGGTSCS--SCCCHH
T ss_pred cCchhhHHHHHHHHHH-----------cCCCEEEEcC--CCHHHHHHHHHcCCCEEEEcCCCcCCCC--CCCChH
Confidence 455555667777776 6889999964 34577888999 9999999776665553 466655
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.4e-07 Score=83.03 Aligned_cols=92 Identities=13% Similarity=0.122 Sum_probs=65.0
Q ss_pred CCCceeEEeecCCHHHHHHHHHHHcc----CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCC
Q psy7344 113 HMCGHSLMFCGNDSKNLTEAAKLAEP----HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPH 188 (240)
Q Consensus 113 ~~~pvivqi~g~d~~~~~~aa~~le~----~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~ 188 (240)
.+.|++++|.+.+++++.+.++.+++ ++|.|+||++||+.. .+..+..+++.+.++++++++.
T Consensus 125 ~~~pvivsi~g~~~~~~~~~~~~~~~~~~~~ad~ielNiScPn~~-----g~~~l~~~~~~~~~i~~~v~~~-------- 191 (354)
T 3tjx_A 125 GKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVP-----GKPQVAYDFDAMRQCLTAVSEV-------- 191 (354)
T ss_dssp TTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECC--------------CTTSHHHHHHHHHHHHHH--------
T ss_pred CCceEEEEEecCChHHHHHHHHHHHHhhhcCCCEEEeeeCCCCCc-----chhhhccCHHHHHHHHHHHHHH--------
Confidence 35799999999999888887776643 689999999999863 2456788999999999999998
Q ss_pred CCCCCeeeEEeee--hh--cHHHHHHHHhC--CCCeEE
Q psy7344 189 CDGNDINIGCPQM--VA--KRGHYGAYLQD--DWPLLT 220 (240)
Q Consensus 189 ~~~~~~pvsvK~r--~~--~~~~~~~~l~~--G~~~it 220 (240)
++.|+.+|++ +. .....+..+.+ +++.++
T Consensus 192 ---~~~pv~vK~~p~~~~~~~~~~~~~~~~~~~~~~i~ 226 (354)
T 3tjx_A 192 ---YPHSFGVKMPPYFDFAAFDAAAEILNEFPKVQFIT 226 (354)
T ss_dssp ---CCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEE
T ss_pred ---hhcccccccCCCCCchhHHHHHHHHHhhcccchhh
Confidence 7889999999 32 23445555554 444443
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.57 E-value=7.6e-08 Score=86.81 Aligned_cols=90 Identities=16% Similarity=0.177 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHcc-CCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 126 SKNLTEAAKLAEP-HCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 126 ~~~~~~aa~~le~-~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++++.++|+.+.+ |+|+||||.+| |........||..+..++..+.++++++++++ +.+ |
T Consensus 152 i~~f~~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~v---------g~~-~ 221 (362)
T 4ab4_A 152 VEAYRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVW---------GAQ-R 221 (362)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHH---------CGG-G
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhc---------CCC-c
Confidence 3456677777754 89999999999 75433345577778888999999999999983 124 9
Q ss_pred eEEeeehh-------------cHHHHHHHHhC-CCCeEEEeccc
Q psy7344 196 IGCPQMVA-------------KRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 196 vsvK~r~~-------------~~~~~~~~l~~-G~~~itih~R~ 225 (240)
|++|++.. ++.++++.|++ |+|+|++|+++
T Consensus 222 v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~ 265 (362)
T 4ab4_A 222 VGVHLAPRADAHDMGDADRAETFTYVARELGKRGIAFICSRERE 265 (362)
T ss_dssp EEEEECTTCCSSSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred eEEEeeccccccccCCCCcHHHHHHHHHHHHHhCCCEEEECCCC
Confidence 99999921 35778999999 99999999987
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=9e-08 Score=93.43 Aligned_cols=90 Identities=13% Similarity=0.054 Sum_probs=72.7
Q ss_pred HHHHHHHHHHcc-CCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+++.++|+.+.+ |+|+||||.+| |..-.....||.++..++..+.+|++++++++ +.++||
T Consensus 149 ~~f~~aA~~a~~aGfDgVEih~a~gyLl~qFlsp~~N~R~D~yGGs~enR~r~~~eiv~avr~~v---------g~~~pv 219 (729)
T 1o94_A 149 QFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAV---------GSDCAI 219 (729)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHH---------TTTSEE
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCcCcCCCCHHHHhHHHHHHHHHHHHHh---------CCCceE
Confidence 678888888754 89999999999 65433345677778889999999999999983 137899
Q ss_pred EEeeeh------------hcHHHHHHHHhCCCCeEEEeccc
Q psy7344 197 GCPQMV------------AKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 197 svK~r~------------~~~~~~~~~l~~G~~~itih~R~ 225 (240)
++|++. ++..++++.|++|+|.+.+|.++
T Consensus 220 ~vrls~~~~~~~~G~~~~~~~~~~~~~l~~~~d~~~v~~g~ 260 (729)
T 1o94_A 220 ATRFGVDTVYGPGQIEAEVDGQKFVEMADSLVDMWDITIGD 260 (729)
T ss_dssp EEEEEEECSSCTTSCCTTTHHHHHHHHHGGGCSEEEEEECC
T ss_pred EEEEccccCcCCCCCCchHHHHHHHHHHHhhcCEEEEeeec
Confidence 999982 25678888887799999999986
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.2e-07 Score=85.50 Aligned_cols=90 Identities=18% Similarity=0.206 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHcc-CCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 126 SKNLTEAAKLAEP-HCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 126 ~~~~~~aa~~le~-~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++++.++|+.+.+ |+|+||||.+| |........||..+..++..+.++++++++++ +.+ |
T Consensus 160 i~~f~~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~v---------g~~-~ 229 (361)
T 3gka_A 160 VAAFRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVW---------SAA-R 229 (361)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHH---------CGG-G
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHc---------CCC-e
Confidence 3456677777754 89999999999 76433445577778888899999999999983 124 9
Q ss_pred eEEeeeh-------------hcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 196 IGCPQMV-------------AKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 196 vsvK~r~-------------~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
|++|++. +++.++++.|++ |+|+|++|+++
T Consensus 230 v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~ 273 (361)
T 3gka_A 230 VGVHLAPRGDAHTMGDSDPAATFGHVARELGRRRIAFLFARESF 273 (361)
T ss_dssp EEEEECTTCCSSSCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred EEEecccccccCCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 9999993 135779999999 99999999987
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.6e-07 Score=85.60 Aligned_cols=110 Identities=10% Similarity=-0.037 Sum_probs=76.3
Q ss_pred CCceeEEeec-CCHHHHHHHHHHHcc-CCCEEEecCCCchh---------------hh-h----------cc----cccc
Q psy7344 114 MCGHSLMFCG-NDSKNLTEAAKLAEP-HCDGIDINIGCPQM---------------VA-K----------RG----HYGA 161 (240)
Q Consensus 114 ~~pvivqi~g-~d~~~~~~aa~~le~-~~d~Idin~gCP~~---------------~~-~----------~~----g~G~ 161 (240)
+.|+.+||.. .|.+...++++.++. |+++++||.+||.. .. . .. +.|+
T Consensus 146 ~~~~~~QLy~~~d~~~~~~~~~ra~~~G~~al~itvd~p~~g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~g~ 225 (392)
T 2nzl_A 146 EALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDS 225 (392)
T ss_dssp TSEEEEEECCBSSHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHTCCCCTTCCCTTC-----------------
T ss_pred CCcEEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCCCccchhHhHhhccCCccccchhhhhhhhcccCccccccCcc
Confidence 4689999966 789888899988865 89999999999984 10 0 00 1122
Q ss_pred ---cccC---CHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEecccccccCCCCC
Q psy7344 162 ---YLQD---DWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAMLVGILDN 234 (240)
Q Consensus 162 ---~l~~---~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~ 234 (240)
+++. ||+...+.++++++. +++||++|.- .+.+.++.+++ |+|+|+++++...|.+ .+
T Consensus 226 ~~~~~~~~~~d~~~~~~~i~~lr~~-----------~~~PvivKgv--~~~e~A~~a~~aGad~I~vs~~ggr~~~--~g 290 (392)
T 2nzl_A 226 GLAAYVAKAIDPSISWEDIKWLRRL-----------TSLPIVAKGI--LRGDDAREAVKHGLNGILVSNHGARQLD--GV 290 (392)
T ss_dssp CHHHHHHHHBCTTCCHHHHHHHC-------------CCSCEEEEEE--CCHHHHHHHHHTTCCEEEECCGGGTSST--TC
T ss_pred hHHHHHhhcCChHHHHHHHHHHHHh-----------hCCCEEEEec--CCHHHHHHHHHcCCCEEEeCCCCCCcCC--CC
Confidence 1222 555555667777777 6889999965 33667888989 9999999887776653 46
Q ss_pred CCCC
Q psy7344 235 TGSW 238 (240)
Q Consensus 235 ~adw 238 (240)
++.|
T Consensus 291 ~~~~ 294 (392)
T 2nzl_A 291 PATI 294 (392)
T ss_dssp CCHH
T ss_pred cChH
Confidence 6555
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=6.3e-08 Score=89.46 Aligned_cols=137 Identities=12% Similarity=0.061 Sum_probs=87.5
Q ss_pred CCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhccc-------------------------------------
Q psy7344 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVS------------------------------------- 56 (240)
Q Consensus 14 ~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~------------------------------------- 56 (240)
++|.|+||++||..+ |..++++++.+.+|+.++. +.
T Consensus 209 ~aD~ieiNiscPnt~------Glr~lq~~~~l~~il~~v~-~~~~~~~~~~~~~~g~~~~~~~~vv~~~~~~~~~~~~~~ 281 (443)
T 1tv5_A 209 YADYIAINVSSPNTP------GLRDNQEAGKLKNIILSVK-EEIDNLEKNNIMNDESTYNEDNKIVEKKNNFNKNNSHMM 281 (443)
T ss_dssp GCSEEEEECCCTTST------TGGGGGSHHHHHHHHHHHH-HHHHHHC--------------------------------
T ss_pred CCCEEEEeccCCCCc------ccccccCHHHHHHHHHHHH-HHHhhhcccCccccccCHHHHHHHHHHhhcccccchhhh
Confidence 689999999999974 6788999999999998876 22
Q ss_pred -------------CCCc-eeecccccccCCC---ccccc-----cCchhhhhhhhccccee------------eeC----
Q psy7344 57 -------------KNGP-LFMGPLFIAEPHC---DGIDI-----NIGCPQMVAKRGHYGAY------------LQD---- 98 (240)
Q Consensus 57 -------------~~~p-~~vk~~~~lap~~---~~~dl-----~~gC~~~i~~~g~~ga~------------l~~---- 98 (240)
.+.| +++|.. |.. +..++ ..| ...+++++++... +..
T Consensus 282 ~~~~~~~~~~~~~~~~P~V~vKis----pd~~~ed~~~iA~~~~~aG-aDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~ 356 (443)
T 1tv5_A 282 KDAKDNFLWFNTTKKKPLVFVKLA----PDLNQEQKKEIADVLLETN-IDGMIISNTTTQINDIKSFENKKGGVSGAKLK 356 (443)
T ss_dssp ------CCCCSSSSSCCEEEEEEC----SCCCHHHHHHHHHHHHHTT-CSEEEECCCBSCCCCCGGGTTCCSEEEEHHHH
T ss_pred hhhhhcchhcccCCCCCeEEEEeC----CCCCHHHHHHHHHHHHHcC-CCEEEEECCCcccccccccccccCCcCCCcch
Confidence 2467 788732 211 11111 233 2344444443321 100
Q ss_pred --ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHH
Q psy7344 99 --DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176 (240)
Q Consensus 99 --d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~ 176 (240)
.+++++++...+. ...|+|.. +++.+..++.+++..|+|+|+++.+- +..+|+.+.+|.+.
T Consensus 357 ~~sl~~i~~v~~~v~-~~iPVIg~---GGI~s~~DA~e~l~aGAd~Vqigral-------------l~~gP~l~~~i~~~ 419 (443)
T 1tv5_A 357 DISTKFICEMYNYTN-KQIPIIAS---GGIFSGLDALEKIEAGASVCQLYSCL-------------VFNGMKSAVQIKRE 419 (443)
T ss_dssp HHHHHHHHHHHHHTT-TCSCEEEE---SSCCSHHHHHHHHHTTEEEEEESHHH-------------HHHGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCCcEEEE---CCCCCHHHHHHHHHcCCCEEEEcHHH-------------HhcChHHHHHHHHH
Confidence 1355666655442 14677655 88888889999998899999997661 11367777777766
Q ss_pred hhh
Q psy7344 177 PNM 179 (240)
Q Consensus 177 ~~~ 179 (240)
+..
T Consensus 420 l~~ 422 (443)
T 1tv5_A 420 LNH 422 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.8e-07 Score=82.48 Aligned_cols=94 Identities=18% Similarity=0.182 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHcc-CCCEEEec---------CCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 126 SKNLTEAAKLAEP-HCDGIDIN---------IGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 126 ~~~~~~aa~~le~-~~d~Idin---------~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++++.++|+.+.+ |+|+|||| +.||........||..+..++..+.++++++++++ +.++|
T Consensus 142 i~~f~~AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~av---------g~d~p 212 (343)
T 3kru_A 142 VKAFGEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNW---------PENKP 212 (343)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTS---------CTTSC
T ss_pred HHHHHHHHhhccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcC---------CccCC
Confidence 4567777887755 89999999 77998655566788888888999999999999982 13789
Q ss_pred eEEeeeh----------hcHHHHHHHHhCCCCeEEE-ecccccc
Q psy7344 196 IGCPQMV----------AKRGHYGAYLQDDWPLLTE-LGKMAML 228 (240)
Q Consensus 196 vsvK~r~----------~~~~~~~~~l~~G~~~iti-h~R~~~~ 228 (240)
|++|++. +++.++++.|++-+|+|++ |||+..+
T Consensus 213 v~vRls~~~~~~~g~~~~~~~~~a~~l~~~vd~i~vs~g~~~~~ 256 (343)
T 3kru_A 213 IFVRVSADDYMEGGINIDMMVEYINMIKDKVDLIDVSSGGLLNV 256 (343)
T ss_dssp EEEEEECCCSSTTSCCHHHHHHHHHHHTTTCSEEEEECCCSSCC
T ss_pred eEEEeechhhhccCccHHHHHHHHHHhhccccEEeccCCceEee
Confidence 9999993 3456777777656999999 7887654
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=4.7e-07 Score=82.10 Aligned_cols=90 Identities=18% Similarity=0.128 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHc-c-CCCEEEecCCC---------chhhhh-cccccc-cccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 126 SKNLTEAAKLAE-P-HCDGIDINIGC---------PQMVAK-RGHYGA-YLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 126 ~~~~~~aa~~le-~-~~d~Idin~gC---------P~~~~~-~~g~G~-~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
++++.++|+.+. + |+|+|+||.+| |..-.. ...+|. .+..++..+.++++++++++ .
T Consensus 173 i~~f~~AA~~a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~~~eiv~aVr~av----------g 242 (379)
T 3aty_A 173 IPLFVEGAKNAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAV----------G 242 (379)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHHHHHHHHHHHHHH----------C
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHHHHHHHHHHHHhc----------C
Confidence 445667777765 4 89999999998 543222 344666 78888899999999999983 2
Q ss_pred CeeeEEeeeh-------------hcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 193 DINIGCPQMV-------------AKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 193 ~~pvsvK~r~-------------~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.-||++|++. +++.++++.|++ |+|+|.+|+|+
T Consensus 243 ~~~v~vRis~~~~~~~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~ 289 (379)
T 3aty_A 243 SDRVGLRISPLNGVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGD 289 (379)
T ss_dssp GGGEEEEECTTCCGGGCCCSCHHHHHHHHHHHHGGGCCSEEEEECSC
T ss_pred CCeEEEEECcccccccCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 2379999983 135789999999 99999999986
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=4.1e-07 Score=81.99 Aligned_cols=91 Identities=12% Similarity=0.153 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHcc-CCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 126 SKNLTEAAKLAEP-HCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 126 ~~~~~~aa~~le~-~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++++.++|+.+.+ |+|+|+||.+| |........||..+..+...+.++++++++++ +.++|
T Consensus 157 i~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~av---------g~d~p 227 (363)
T 3l5l_A 157 KQDFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVW---------PENLP 227 (363)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTS---------CTTSC
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHc---------CCCce
Confidence 3456777777755 89999999984 66433445677777777888999999999983 23789
Q ss_pred eEEeeeh-----------hcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 196 IGCPQMV-----------AKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 196 vsvK~r~-----------~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
|.+|++. +++.++++.|++ |+|+|.+|+++
T Consensus 228 V~vRis~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~ 269 (363)
T 3l5l_A 228 LTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGF 269 (363)
T ss_dssp EEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEecchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 9999982 245778999999 99999999865
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=4.8e-08 Score=85.97 Aligned_cols=144 Identities=10% Similarity=-0.038 Sum_probs=88.2
Q ss_pred cccCCCC---eecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCcccc-----ccCc
Q psy7344 10 ETEPHCD---GIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGID-----INIG 81 (240)
Q Consensus 10 ~~~~~~d---~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~d-----l~~g 81 (240)
+.+.++| .|+||++||.. + .+..+..+++.+.+++.++. +..+.|+++|....+.. .+..+ ...|
T Consensus 115 ~~~~g~d~~~~iein~~~P~~---~--g~~~~g~~~~~~~~ii~~vr-~~~~~Pv~vK~~~~~~~-~~~~~~a~~~~~aG 187 (314)
T 2e6f_A 115 LAPVAQEKGVLLELNLSCPNV---P--GKPQVAYDFEAMRTYLQQVS-LAYGLPFGVKMPPYFDI-AHFDTAAAVLNEFP 187 (314)
T ss_dssp HHHHHHHHCCEEEEECCCCCS---T--TCCCGGGSHHHHHHHHHHHH-HHHCSCEEEEECCCCCH-HHHHHHHHHHHTCT
T ss_pred HHHhCCCcCceEEEEcCCCCC---C--CchhhcCCHHHHHHHHHHHH-HhcCCCEEEEECCCCCH-HHHHHHHHHHHhcC
Confidence 4445678 99999999996 2 26778889999999999998 35578999874211100 00000 0122
Q ss_pred hhhhhhhhcccc-------------------e-eee------CChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHH
Q psy7344 82 CPQMVAKRGHYG-------------------A-YLQ------DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKL 135 (240)
Q Consensus 82 C~~~i~~~g~~g-------------------a-~l~------~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~ 135 (240)
+...+..+++++ . .+. ..+++++++...+ .+.|++.. +++.+..++.++
T Consensus 188 ~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~--~~ipvi~~---GGI~~~~da~~~ 262 (314)
T 2e6f_A 188 LVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRC--PDKLVFGC---GGVYSGEDAFLH 262 (314)
T ss_dssp TEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHC--TTSEEEEE---SSCCSHHHHHHH
T ss_pred CceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhc--CCCCEEEE---CCCCCHHHHHHH
Confidence 112222222221 0 011 1145666655544 14677655 777777788888
Q ss_pred HccCCCEEEecCCCchhhhhcccccccccC-CHHHHHHHHHHhhh
Q psy7344 136 AEPHCDGIDINIGCPQMVAKRGHYGAYLQD-DWPLLTNLVYSPNM 179 (240)
Q Consensus 136 le~~~d~Idin~gCP~~~~~~~g~G~~l~~-~p~~i~~iv~~~~~ 179 (240)
+..|+|+|+++++ ++. +|+.+.++.+.++.
T Consensus 263 l~~GAd~V~ig~~--------------~l~~~p~~~~~i~~~l~~ 293 (314)
T 2e6f_A 263 ILAGASMVQVGTA--------------LQEEGPGIFTRLEDELLE 293 (314)
T ss_dssp HHHTCSSEEECHH--------------HHHHCTTHHHHHHHHHHH
T ss_pred HHcCCCEEEEchh--------------hHhcCcHHHHHHHHHHHH
Confidence 8779999999665 453 88888888876655
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.8e-07 Score=83.08 Aligned_cols=95 Identities=16% Similarity=0.148 Sum_probs=71.3
Q ss_pred HHHHHHHHHHcc-CCCEEEecCCC---------chhhhhcccccccc-cCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINIGC---------PQMVAKRGHYGAYL-QDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~gC---------P~~~~~~~g~G~~l-~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
+++.++|+++.+ |+|+||||.+| |..-.....||..+ ......+.+|++++++++ +. -.+.++|
T Consensus 170 ~~F~~AA~rA~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~yGGs~lenR~Rf~~evv~aVr~~v---~~--~~~~~f~ 244 (419)
T 3l5a_A 170 QQYRDATLRAIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLEVMRAVQEVI---DK--EAPDNFI 244 (419)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSTTCHHHHHHHHHHHHHHHHHHH---HH--HCCTTCE
T ss_pred HHHHHHHHHHHHcCCCEEEECCccchHHHHccCCcccccccCCCCchhhhhhHHHHHHHHHHHHHH---hh--hcCCCee
Confidence 456777777754 89999999998 76433445577777 777888999999999872 00 0013789
Q ss_pred eEEeeeh------------hcHHHHHHHHhC--CCCeEEEecccc
Q psy7344 196 IGCPQMV------------AKRGHYGAYLQD--DWPLLTELGKMA 226 (240)
Q Consensus 196 vsvK~r~------------~~~~~~~~~l~~--G~~~itih~R~~ 226 (240)
|++|++. +++.++++.|++ |+|+|+||+++.
T Consensus 245 v~vRis~~~~~~~~~G~~~ed~~~la~~L~~~~Gvd~I~vs~g~~ 289 (419)
T 3l5a_A 245 LGFRATPEETRGSDLGYTIDEFNQLIDWVMDVSNIQYLAIASWGR 289 (419)
T ss_dssp EEEEECSCEEETTEEEECHHHHHHHHHHHHHHSCCCCEEECCTTC
T ss_pred EEEecccccccCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeeCCc
Confidence 9999972 346788898876 999999999986
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.3e-06 Score=78.08 Aligned_cols=92 Identities=8% Similarity=-0.009 Sum_probs=61.0
Q ss_pred CCceeEEee-cCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHH--HHHHHHHhhhccccccCCCCC
Q psy7344 114 MCGHSLMFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPL--LTNLVYSPNMVHFVIAEPHCD 190 (240)
Q Consensus 114 ~~pvivqi~-g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~--i~~iv~~~~~~~~~i~~~~~~ 190 (240)
+.|+++|+. +.+++.+.++++. .++|+|+||.+||+...... .+++. +.++++++++.
T Consensus 116 ~~pv~~~i~~~~~~~~~~~~~~~--~gad~i~i~~~~~~~~~~~~-------~~~~~~~~~~~i~~vr~~---------- 176 (349)
T 1p0k_A 116 NGLIFANLGSEATAAQAKEAVEM--IGANALQIHLNVIQEIVMPE-------GDRSFSGALKRIEQICSR---------- 176 (349)
T ss_dssp SSCEEEEEETTCCHHHHHHHHHH--TTCSEEEEEECTTTTC---------------CTTHHHHHHHHHHH----------
T ss_pred CceeEEeecCCCCHHHHHHHHHh--cCCCeEEecccchhhhcCCC-------CCcchHHHHHHHHHHHHH----------
Confidence 579999998 6777765544332 37999999999998533221 13322 45677777776
Q ss_pred CCCeeeEEeee-hhcHHHHHHHHhC-CCCeEEE--eccc
Q psy7344 191 GNDINIGCPQM-VAKRGHYGAYLQD-DWPLLTE--LGKM 225 (240)
Q Consensus 191 ~~~~pvsvK~r-~~~~~~~~~~l~~-G~~~iti--h~R~ 225 (240)
+++||.+|+. .....+.++.+++ |+|+|++ ||+|
T Consensus 177 -~~~Pv~vK~~~~~~~~~~a~~a~~~Gad~I~v~~~ggt 214 (349)
T 1p0k_A 177 -VSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGT 214 (349)
T ss_dssp -CSSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC----
T ss_pred -cCCCEEEEecCCCCCHHHHHHHHHcCCCEEEEcCCCCc
Confidence 6889999984 3334677899999 9999999 8886
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=2.5e-07 Score=82.23 Aligned_cols=137 Identities=14% Similarity=0.072 Sum_probs=84.5
Q ss_pred CCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccC---------CCceeecccccccCCCcccc-----c
Q psy7344 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSK---------NGPLFMGPLFIAEPHCDGID-----I 78 (240)
Q Consensus 13 ~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~---------~~p~~vk~~~~lap~~~~~d-----l 78 (240)
.++|.|+||++||..+ |..+++++.++.+++.++. +.. +.|+++|....+.. .+..+ .
T Consensus 164 ~g~d~iein~~sP~~~------g~~~~~~~~~~~~il~~vr-~~~~~~~~~~g~~~Pv~vKi~~~~~~-~~~~~~a~~l~ 235 (336)
T 1f76_A 164 AYAGYIAINISSPNTP------GLRTLQYGEALDDLLTAIK-NKQNDLQAMHHKYVPIAVKIAPDLSE-EELIQVADSLV 235 (336)
T ss_dssp GGCSEEEEECCCSSST------TGGGGGSHHHHHHHHHHHH-HHHHHHHHHHTSCCCEEEECCSCCCH-HHHHHHHHHHH
T ss_pred ccCCEEEEEccCCCCC------CcccccCHHHHHHHHHHHH-HHHHhhhhcccccCceEEEecCCCCH-HHHHHHHHHHH
Confidence 3799999999999843 3446778999999999888 344 68999873211000 00000 0
Q ss_pred cCchhhhhhhhccc---------------ceeee-----CChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc
Q psy7344 79 NIGCPQMVAKRGHY---------------GAYLQ-----DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP 138 (240)
Q Consensus 79 ~~gC~~~i~~~g~~---------------ga~l~-----~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~ 138 (240)
..| ...+.+++++ |.+.. ..+++++++...+. .+.|++.. +++.+..++.++++.
T Consensus 236 ~~G-vd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~-~~ipVi~~---GGI~~~~da~~~l~~ 310 (336)
T 1f76_A 236 RHN-IDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELN-GRLPIIGV---GGIDSVIAAREKIAA 310 (336)
T ss_dssp HTT-CSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHT-TSSCEEEE---SSCCSHHHHHHHHHH
T ss_pred HcC-CcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhC-CCCCEEEE---CCCCCHHHHHHHHHC
Confidence 223 2233333221 11110 11355555554442 24687765 777778888888888
Q ss_pred CCCEEEecCCCchhhhhcccccccccC-CHHHHHHHHHH
Q psy7344 139 HCDGIDINIGCPQMVAKRGHYGAYLQD-DWPLLTNLVYS 176 (240)
Q Consensus 139 ~~d~Idin~gCP~~~~~~~g~G~~l~~-~p~~i~~iv~~ 176 (240)
|+|+|+++++ ++. +|+.+.++.+.
T Consensus 311 GAd~V~igr~--------------~l~~~P~~~~~i~~~ 335 (336)
T 1f76_A 311 GASLVQIYSG--------------FIFKGPPLIKEIVTH 335 (336)
T ss_dssp TCSEEEESHH--------------HHHHCHHHHHHHHHH
T ss_pred CCCEEEeeHH--------------HHhcCcHHHHHHHhh
Confidence 9999999766 455 89999888764
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.7e-07 Score=83.78 Aligned_cols=147 Identities=14% Similarity=0.100 Sum_probs=94.9
Q ss_pred cccCCCCeecccCCC---------chhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccc--cccC---CCcc
Q psy7344 10 ETEPHCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLF--IAEP---HCDG 75 (240)
Q Consensus 10 ~~~~~~d~id~N~gc---------P~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~--~lap---~~~~ 75 (240)
..+.|+|.|+||+|| |..+.+...||..|++++.++.+++.++. +..+.|+.+|..- +... ..+.
T Consensus 153 a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr-~~v~~pv~vRls~~~~~~~g~~~~~~ 231 (340)
T 3gr7_A 153 AKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVR-EVWDGPLFVRISASDYHPDGLTAKDY 231 (340)
T ss_dssp HHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHH-HHCCSCEEEEEESCCCSTTSCCGGGH
T ss_pred HHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHH-HhcCCceEEEeccccccCCCCCHHHH
Confidence 345689999999995 98776666788889999999999999999 4668888886321 1100 0111
Q ss_pred ccc-----cCchhhhhhhh-ccccee---e--eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccC-CCEE
Q psy7344 76 IDI-----NIGCPQMVAKR-GHYGAY---L--QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGI 143 (240)
Q Consensus 76 ~dl-----~~gC~~~i~~~-g~~ga~---l--~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~-~d~I 143 (240)
.++ ..| ...+.++ |++... . ..+++++..++..+ ..|+++. ++..+..++.++++.+ +|.|
T Consensus 232 ~~la~~L~~~G-vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~---~iPVi~~---GgI~s~e~a~~~L~~G~aD~V 304 (340)
T 3gr7_A 232 VPYAKRMKEQG-VDLVDVSSGAIVPARMNVYPGYQVPFAELIRREA---DIPTGAV---GLITSGWQAEEILQNGRADLV 304 (340)
T ss_dssp HHHHHHHHHTT-CCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHT---TCCEEEE---SSCCCHHHHHHHHHTTSCSEE
T ss_pred HHHHHHHHHcC-CCEEEEecCCccCCCCCCCccccHHHHHHHHHHc---CCcEEee---CCCCCHHHHHHHHHCCCeeEE
Confidence 111 222 2223333 111110 0 11356666665544 3677654 6655666777888886 9999
Q ss_pred EecCCCchhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 144 DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 144 din~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
.++++ ++.||+++.++.+.+.
T Consensus 305 ~iGR~--------------~lanPdl~~ki~~~l~ 325 (340)
T 3gr7_A 305 FLGRE--------------LLRNPYWPYAAARELG 325 (340)
T ss_dssp EECHH--------------HHHCTTHHHHHHHHTT
T ss_pred EecHH--------------HHhCchHHHHHHHHCC
Confidence 99766 6789999999988754
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=98.22 E-value=2.7e-06 Score=76.78 Aligned_cols=95 Identities=12% Similarity=0.019 Sum_probs=65.0
Q ss_pred CceeEEee-cCCHHHHHHHHHHHcc-CCCEEEecCCCchhh--------------------hhc-------ccccccc--
Q psy7344 115 CGHSLMFC-GNDSKNLTEAAKLAEP-HCDGIDINIGCPQMV--------------------AKR-------GHYGAYL-- 163 (240)
Q Consensus 115 ~pvivqi~-g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~--------------------~~~-------~g~G~~l-- 163 (240)
.|..+|+. +.|.+...++++.+++ |++.|+|+.+||..- ... ...|+.+
T Consensus 123 ~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~it~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~ 202 (370)
T 1gox_A 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSS 202 (370)
T ss_dssp CCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHH
T ss_pred CCceEEEecCCCchHHHHHHHHHHHCCCCEEEEeCCCCcccccHHHHHhccCCCcccchhhhhhhhhhccccccCccHHH
Confidence 57899985 7899888888888865 899999999998640 000 1123322
Q ss_pred ----cCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEe
Q psy7344 164 ----QDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 164 ----~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih 222 (240)
+.+|....+.++++++. +++||.+|.... .+.++.+++ |+|+|++.
T Consensus 203 ~v~~~~~~~~~~~~i~~l~~~-----------~~~pv~vK~~~~--~e~a~~a~~~Gad~I~vs 253 (370)
T 1gox_A 203 YVAGQIDRSLSWKDVAWLQTI-----------TSLPILVKGVIT--AEDARLAVQHGAAGIIVS 253 (370)
T ss_dssp HHHHTBCTTCCHHHHHHHHHH-----------CCSCEEEECCCS--HHHHHHHHHTTCSEEEEC
T ss_pred HHHhhcCccchHHHHHHHHHH-----------hCCCEEEEecCC--HHHHHHHHHcCCCEEEEC
Confidence 22333333456666666 678999999843 467788888 99999993
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.8e-07 Score=83.40 Aligned_cols=149 Identities=16% Similarity=0.141 Sum_probs=95.2
Q ss_pred ccccCCCCeecccCCC---------chhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccc--cccCCC---c
Q psy7344 9 IETEPHCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLF--IAEPHC---D 74 (240)
Q Consensus 9 ~~~~~~~d~id~N~gc---------P~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~--~lap~~---~ 74 (240)
...+.|+|.|+||+|| |..+.+...||..|++++.++.+++.++. +..+.|+.+|... +..... +
T Consensus 152 ~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr-~~v~~pv~vris~~~~~~~g~~~~~ 230 (338)
T 1z41_A 152 RAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVK-QVWDGPLFVRVSASDYTDKGLDIAD 230 (338)
T ss_dssp HHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHH-HHCCSCEEEEEECCCCSTTSCCHHH
T ss_pred HHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHH-HHcCCcEEEEecCcccCCCCCCHHH
Confidence 3456789999999998 87665556688889999999999999998 4667888887321 111000 0
Q ss_pred cccc-----cCchhhhhhhhcccc--e--ee--eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccC-CCE
Q psy7344 75 GIDI-----NIGCPQMVAKRGHYG--A--YL--QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDG 142 (240)
Q Consensus 75 ~~dl-----~~gC~~~i~~~g~~g--a--~l--~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~-~d~ 142 (240)
..++ ..| ...+.+++++. . .. ..+++++..++..+ +.|+++. ++..+..++.++++.+ +|.
T Consensus 231 ~~~~a~~l~~~G-vd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~---~iPVi~~---Ggi~s~~~a~~~l~~G~aD~ 303 (338)
T 1z41_A 231 HIGFAKWMKEQG-VDLIDCSSGALVHADINVFPGYQVSFAEKIREQA---DMATGAV---GMITDGSMAEEILQNGRADL 303 (338)
T ss_dssp HHHHHHHHHHTT-CCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH---CCEEEEC---SSCCSHHHHHHHHHTTSCSE
T ss_pred HHHHHHHHHHcC-CCEEEEecCccccCCCCCCccchHHHHHHHHHHC---CCCEEEE---CCCCCHHHHHHHHHcCCceE
Confidence 0101 222 22333333221 1 00 01345666665543 3676543 6666667788888886 999
Q ss_pred EEecCCCchhhhhcccccccccCCHHHHHHHHHHhhh
Q psy7344 143 IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM 179 (240)
Q Consensus 143 Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~ 179 (240)
|.++++ ++.||+++.++.+.+.+
T Consensus 304 V~iGR~--------------~i~nPdl~~ki~~~~~~ 326 (338)
T 1z41_A 304 IFIGRE--------------LLRDPFFARTAAKQLNT 326 (338)
T ss_dssp EEECHH--------------HHHCTTHHHHHHHHTTC
T ss_pred EeecHH--------------HHhCchHHHHHHcCCCc
Confidence 998666 57899999999877543
|
| >3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.9e-06 Score=78.72 Aligned_cols=93 Identities=18% Similarity=0.171 Sum_probs=71.1
Q ss_pred HH-HHHHHHHHcc-CCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 127 KN-LTEAAKLAEP-HCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 127 ~~-~~~aa~~le~-~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++ +.++|+.+.+ |+|+||||.+| |........||..+..+...+.+|++++++++ ...|
T Consensus 167 ~~~~~~aa~~a~~aGfdgveih~~~GYLl~QFLsp~~N~r~D~YGGs~enr~r~~~ei~~av~~~~----------~~~~ 236 (407)
T 3tjl_A 167 YEAYTNAAQKAMDAGFDYIELHAAHGYLLDQFLQPCTNQRTDEYGGSIENRARLILELIDHLSTIV----------GADK 236 (407)
T ss_dssp HTHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHH----------CGGG
T ss_pred HHHHHHHHHHHHHhCCCeEEECCccchHHHHhcCccccccCCcCCCChhhChHHHHHHHHHHHHHh----------CCCe
Confidence 44 6777777754 89999999999 75333344577778888999999999999984 2237
Q ss_pred eEEeeeh-h---------c-------HHHHHHHH---hC-C--CCeEEEe-ccccccc
Q psy7344 196 IGCPQMV-A---------K-------RGHYGAYL---QD-D--WPLLTEL-GKMAMLV 229 (240)
Q Consensus 196 vsvK~r~-~---------~-------~~~~~~~l---~~-G--~~~itih-~R~~~~~ 229 (240)
|++|++. + + +.++++.| ++ | +++|++| +|+..+.
T Consensus 237 v~~r~~~~~~~~g~~~~~d~~~~~~~~~~l~~~L~~~~~~G~~l~ylhv~~~~~~~~~ 294 (407)
T 3tjl_A 237 IGIRISPWATFQNMKAHKDTVHPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSGNV 294 (407)
T ss_dssp EEEEECTTCCGGGCCGGGSSSCHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTEETTE
T ss_pred EEEEECcccccCCCcccccccccHHHHHHHHHHHHhHhhcCCceeEEEEEccccCCCC
Confidence 9999992 1 2 36788889 88 9 9999999 8876653
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.7e-06 Score=82.43 Aligned_cols=91 Identities=12% Similarity=-0.032 Sum_probs=70.7
Q ss_pred HHHHHHHHHHcc-CCCEEEecCCCch-h---------hhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINIGCPQ-M---------VAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~gCP~-~---------~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
+++.++|+.+.+ |+|+|||+.+|+. - -.....||..+..+...+.+|++++++++ +.++|
T Consensus 156 ~~f~~aA~~a~~aGfDgVeih~a~gy~L~~qFlsp~~N~R~D~yGGs~enR~r~~~ei~~avr~~~---------g~~~~ 226 (690)
T 3k30_A 156 RWHRNAVRRSIEAGYDIVYVYGAHGYSGVHHFLSKRYNQRTDEYGGSLENRMRLLRELLEDTLDEC---------AGRAA 226 (690)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECTTCSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHH---------TTSSE
T ss_pred HHHHHHHHHHHHcCCCEEEEcccccchHHHHhCCCccCCCccccCCCHHHHHHHHHHHHHHHHHHh---------CCCce
Confidence 678888888765 8999999999876 1 11223467778778889999999999983 13679
Q ss_pred eEEeee----------hhcHHHHHHHHhCCCCeEEEecccc
Q psy7344 196 IGCPQM----------VAKRGHYGAYLQDDWPLLTELGKMA 226 (240)
Q Consensus 196 vsvK~r----------~~~~~~~~~~l~~G~~~itih~R~~ 226 (240)
|.+|+. .++..++++.|++|+|+|++|+++.
T Consensus 227 v~~r~s~~~~~~~g~~~~~~~~~~~~l~~~~d~~~v~~~~~ 267 (690)
T 3k30_A 227 VACRITVEEEIDGGITREDIEGVLRELGELPDLWDFAMGSW 267 (690)
T ss_dssp EEEEEECCCCSTTSCCHHHHHHHHHHHTTSSSEEEEECSCH
T ss_pred EEEEECccccCCCCCCHHHHHHHHHHHHhhcCEEEEecccc
Confidence 999996 2456788888877999999999863
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.5e-06 Score=75.88 Aligned_cols=141 Identities=13% Similarity=0.118 Sum_probs=84.5
Q ss_pred ccc-CCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCccccc-----cCchh
Q psy7344 10 ETE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDI-----NIGCP 83 (240)
Q Consensus 10 ~~~-~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~dl-----~~gC~ 83 (240)
+.+ .++|.|+||++||..+ + .|..+..+++++.+++.++. +..+.|+.+|... .+.+..++ ..| .
T Consensus 120 ~~~~~g~d~iei~~~~p~~~--~--g~~~~g~~~~~~~eii~~v~-~~~~~pv~vk~~~---~~~~~~~~a~~l~~~G-~ 190 (311)
T 1ep3_A 120 IGDAANVKAIELNISCPNVK--H--GGQAFGTDPEVAAALVKACK-AVSKVPLYVKLSP---NVTDIVPIAKAVEAAG-A 190 (311)
T ss_dssp HTTSTTEEEEEEECCSEEGG--G--TTEEGGGCHHHHHHHHHHHH-HHCSSCEEEEECS---CSSCSHHHHHHHHHTT-C
T ss_pred HhccCCCCEEEEeCCCCCCC--C--chhhhcCCHHHHHHHHHHHH-HhcCCCEEEEECC---ChHHHHHHHHHHHHcC-C
Confidence 344 6799999999999842 2 26777789999999999998 3557898886321 11111110 222 1
Q ss_pred hhhhh---------hccc---------ceee-eCC----hhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCC
Q psy7344 84 QMVAK---------RGHY---------GAYL-QDD----WPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHC 140 (240)
Q Consensus 84 ~~i~~---------~g~~---------ga~l-~~d----~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~ 140 (240)
..+.. |.++ +.+. ... ++++.++...+ +.|+++. +.+.+..++.++++.|+
T Consensus 191 d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~---~ipvia~---GGI~~~~d~~~~l~~GA 264 (311)
T 1ep3_A 191 DGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDV---DIPIIGM---GGVANAQDVLEMYMAGA 264 (311)
T ss_dssp SEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTC---SSCEEEC---SSCCSHHHHHHHHHHTC
T ss_pred CEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhc---CCCEEEE---CCcCCHHHHHHHHHcCC
Confidence 11111 1111 1111 111 24555554332 4677654 55656667777777799
Q ss_pred CEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhh
Q psy7344 141 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM 179 (240)
Q Consensus 141 d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~ 179 (240)
|+|.++.+ ++.+|+.+.++.+.++.
T Consensus 265 d~V~vg~~--------------~l~~p~~~~~i~~~l~~ 289 (311)
T 1ep3_A 265 SAVAVGTA--------------NFADPFVCPKIIDKLPE 289 (311)
T ss_dssp SEEEECTH--------------HHHCTTHHHHHHHHHHH
T ss_pred CEEEECHH--------------HHcCcHHHHHHHHHHHH
Confidence 99998766 44578888888776654
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=4.7e-06 Score=78.26 Aligned_cols=110 Identities=8% Similarity=-0.075 Sum_probs=75.1
Q ss_pred CCceeEEee-cCCHHHHHHHHHHHcc-CCCEEEecCCCchh----hhhcc-------------------ccc-cccc---
Q psy7344 114 MCGHSLMFC-GNDSKNLTEAAKLAEP-HCDGIDINIGCPQM----VAKRG-------------------HYG-AYLQ--- 164 (240)
Q Consensus 114 ~~pvivqi~-g~d~~~~~~aa~~le~-~~d~Idin~gCP~~----~~~~~-------------------g~G-~~l~--- 164 (240)
..|...||. +.|.+.+.+++++++. |+++|.|+..||+. ...+. +.| +.++
T Consensus 246 ~~~~~~QLy~~~d~~~~~~~~~rae~aG~~al~itvd~p~~g~R~~~~r~g~~~p~~~~~~~~g~~~~~~~g~~~~~~~~ 325 (511)
T 1kbi_A 246 KQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKF 325 (511)
T ss_dssp SCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTT
T ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEeCCCCCccccHHHHhccCCCCcccccccccccccccccHHHHHhhc
Confidence 468899997 7899999999999876 89999999999971 11111 111 1122
Q ss_pred CCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCC
Q psy7344 165 DDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSW 238 (240)
Q Consensus 165 ~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw 238 (240)
.+|....++++++++. +++||++|.-.. .+.++.+++ |+|+|+++++...|.+ .+.+.|
T Consensus 326 ~d~~~~~~~i~~lr~~-----------~~~PvivKgv~~--~e~A~~a~~aGad~I~vs~hgG~~~d--~~~~~~ 385 (511)
T 1kbi_A 326 IDPSLTWKDIEELKKK-----------TKLPIVIKGVQR--TEDVIKAAEIGVSGVVLSNHGGRQLD--FSRAPI 385 (511)
T ss_dssp BCTTCCHHHHHHHHHH-----------CSSCEEEEEECS--HHHHHHHHHTTCSEEEECCTTTTSST--TCCCHH
T ss_pred cChHhHHHHHHHHHHH-----------hCCcEEEEeCCC--HHHHHHHHHcCCCEEEEcCCCCccCC--CCCchH
Confidence 3444445567777776 688999996432 567888889 9999999555444543 344444
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=6.3e-07 Score=81.21 Aligned_cols=142 Identities=8% Similarity=-0.034 Sum_probs=90.4
Q ss_pred ccCCCCeecccCCC---------chhhhhccCCCcccCCCchhHHHHHHHhhcccCC-Cceeecccc--cccCCCccccc
Q psy7344 11 TEPHCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKN-GPLFMGPLF--IAEPHCDGIDI 78 (240)
Q Consensus 11 ~~~~~d~id~N~gc---------P~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~-~p~~vk~~~--~lap~~~~~dl 78 (240)
.+.|+|.|+||+|| |..+.+...||..|++++.++.++|.++. +... .|+.++... ....+.+..+.
T Consensus 176 ~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr-~avg~~~v~vrls~~~~~~~~~~~~~~ 254 (377)
T 2r14_A 176 KRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVA-EVFGPERVGIRLTPFLELFGLTDDEPE 254 (377)
T ss_dssp HHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHH-HHHCGGGEEEEECTTCCCTTCCCSCHH
T ss_pred HHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHH-HHcCCCcEEEEeccccccCCCCCCCCH
Confidence 45689999999998 98776666788889999999999999988 3443 388876321 11111111111
Q ss_pred -----------cCchhhhhhhhcccce--eeeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccC-CCEEE
Q psy7344 79 -----------NIGCPQMVAKRGHYGA--YLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGID 144 (240)
Q Consensus 79 -----------~~gC~~~i~~~g~~ga--~l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~-~d~Id 144 (240)
..| ...+.+++++.. .-..+++++..++..+ ..|++.. ++. +..++.++++++ +|+|+
T Consensus 255 ~~~~~la~~le~~G-vd~i~v~~~~~~~~~~~~~~~~~~~ik~~~---~iPvi~~---Ggi-~~~~a~~~l~~g~aD~V~ 326 (377)
T 2r14_A 255 AMAFYLAGELDRRG-LAYLHFNEPDWIGGDITYPEGFREQMRQRF---KGGLIYC---GNY-DAGRAQARLDDNTADAVA 326 (377)
T ss_dssp HHHHHHHHHHHHTT-CSEEEEECCC------CCCTTHHHHHHHHC---CSEEEEE---SSC-CHHHHHHHHHTTSCSEEE
T ss_pred HHHHHHHHHHHHcC-CCEEEEeCCcccCCCCcchHHHHHHHHHHC---CCCEEEE---CCC-CHHHHHHHHHCCCceEEe
Confidence 223 233344433211 0012466777766554 3677654 555 467788888885 99999
Q ss_pred ecCCCchhhhhcccccccccCCHHHHHHHHH
Q psy7344 145 INIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175 (240)
Q Consensus 145 in~gCP~~~~~~~g~G~~l~~~p~~i~~iv~ 175 (240)
++++ ++.||+++.++.+
T Consensus 327 igR~--------------~l~~P~l~~k~~~ 343 (377)
T 2r14_A 327 FGRP--------------FIANPDLPERFRL 343 (377)
T ss_dssp ESHH--------------HHHCTTHHHHHHH
T ss_pred ecHH--------------HHhCchHHHHHHc
Confidence 9776 6789999888875
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=3.2e-07 Score=83.11 Aligned_cols=144 Identities=10% Similarity=-0.012 Sum_probs=89.8
Q ss_pred ccccCCCCeecccCCC---------chhhhhccCCCcccCCCchhHHHHHHHhhcccCC-Cceeecccc--cccCCCcc-
Q psy7344 9 IETEPHCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKN-GPLFMGPLF--IAEPHCDG- 75 (240)
Q Consensus 9 ~~~~~~~d~id~N~gc---------P~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~-~p~~vk~~~--~lap~~~~- 75 (240)
...+.|+|.|+||+|| |..+.+...||..|++++.++.++|.++. ++.. .|+.++... ....+.+.
T Consensus 175 ~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr-~avg~~~V~vrls~~~~~~g~~~~~ 253 (376)
T 1icp_A 175 NAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVA-NEIGSDRVGIRISPFAHYNEAGDTN 253 (376)
T ss_dssp HHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHH-HHHCGGGEEEEECTTCCTTTCCCSC
T ss_pred HHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHH-HHhcCCceEEEeccccccCCCCCCC
Confidence 3456789999999998 87666556688779999999999999998 3543 388876321 11111110
Q ss_pred -----ccc-----cCchhhhhhhhcccce-ee--eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccC-CC
Q psy7344 76 -----IDI-----NIGCPQMVAKRGHYGA-YL--QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CD 141 (240)
Q Consensus 76 -----~dl-----~~gC~~~i~~~g~~ga-~l--~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~-~d 141 (240)
+.+ ..| ...+.+++++.. .. ..+++++..++..+ ..|++.. ++. +..++.++++++ +|
T Consensus 254 ~~~~~~~la~~le~~G-vd~i~v~~~~~~~~~~~~~~~~~~~~vr~~~---~iPvi~~---G~i-~~~~a~~~l~~g~aD 325 (376)
T 1icp_A 254 PTALGLYMVESLNKYD-LAYCHVVEPRMKTAWEKIECTESLVPMRKAY---KGTFIVA---GGY-DREDGNRALIEDRAD 325 (376)
T ss_dssp HHHHHHHHHHHHGGGC-CSEEEEECCSCCC------CCCCSHHHHHHC---CSCEEEE---SSC-CHHHHHHHHHTTSCS
T ss_pred CHHHHHHHHHHHHHcC-CCEEEEcCCcccCCCCccccHHHHHHHHHHc---CCCEEEe---CCC-CHHHHHHHHHCCCCc
Confidence 111 223 233344433210 00 12355555655443 3677654 556 567788888875 99
Q ss_pred EEEecCCCchhhhhcccccccccCCHHHHHHHHH
Q psy7344 142 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175 (240)
Q Consensus 142 ~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~ 175 (240)
.|+++++ ++.||+++.++.+
T Consensus 326 ~V~~gR~--------------~l~~P~l~~k~~~ 345 (376)
T 1icp_A 326 LVAYGRL--------------FISNPDLPKRFEL 345 (376)
T ss_dssp EEEESHH--------------HHHCTTHHHHHHH
T ss_pred EEeecHH--------------HHhCccHHHHHHc
Confidence 9999777 5789999988875
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=6.6e-07 Score=80.68 Aligned_cols=144 Identities=13% Similarity=0.021 Sum_probs=88.9
Q ss_pred cccCCCCeecccCCC---------chhhhhccCCCcccCCCchhHHHHHHHhhcccCC-Cceeecccc--cccCCCcccc
Q psy7344 10 ETEPHCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKN-GPLFMGPLF--IAEPHCDGID 77 (240)
Q Consensus 10 ~~~~~~d~id~N~gc---------P~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~-~p~~vk~~~--~lap~~~~~d 77 (240)
..+.|+|.|+||+|| |..+.+...||..|++++.++.+++.++. +... .|+.+|... ....+.+..+
T Consensus 170 a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr-~~vg~~pv~vris~~~~~~~~~~~~~ 248 (365)
T 2gou_A 170 AMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALV-DAIGAERVGVRLAPLTTLNGTVDADP 248 (365)
T ss_dssp HHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHH-HHHCGGGEEEEECSSCCTTSCCCSSH
T ss_pred HHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHH-HHcCCCcEEEEEccccccCCCCCCCC
Confidence 356789999999998 77655556688889999999999999887 3442 388876321 1101111111
Q ss_pred c-----------cCchhhhhhhhccccee-eeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccC-CCEEE
Q psy7344 78 I-----------NIGCPQMVAKRGHYGAY-LQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGID 144 (240)
Q Consensus 78 l-----------~~gC~~~i~~~g~~ga~-l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~-~d~Id 144 (240)
. ..| ...+.+++++-.. -...+++++.++..+ ..|++.. ++. +..++.++++++ +|+|+
T Consensus 249 ~~~~~~~a~~l~~~G-~d~i~v~~~~~~~~~~~~~~~~~~i~~~~---~iPvi~~---Ggi-~~~~a~~~l~~g~aD~V~ 320 (365)
T 2gou_A 249 ILTYTAAAALLNKHR-IVYLHIAEVDWDDAPDTPVSFKRALREAY---QGVLIYA---GRY-NAEKAEQAINDGLADMIG 320 (365)
T ss_dssp HHHHHHHHHHHHHTT-CSEEEEECCBTTBCCCCCHHHHHHHHHHC---CSEEEEE---SSC-CHHHHHHHHHTTSCSEEE
T ss_pred HHHHHHHHHHHHHcC-CCEEEEeCCCcCCCCCccHHHHHHHHHHC---CCcEEEe---CCC-CHHHHHHHHHCCCcceeh
Confidence 1 122 1223333321000 001246666665544 3676654 555 567788888886 99999
Q ss_pred ecCCCchhhhhcccccccccCCHHHHHHHHHH
Q psy7344 145 INIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176 (240)
Q Consensus 145 in~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~ 176 (240)
++++ ++.||+++.++.+.
T Consensus 321 igR~--------------~i~~P~l~~~~~~g 338 (365)
T 2gou_A 321 FGRP--------------FIANPDLPERLRHG 338 (365)
T ss_dssp CCHH--------------HHHCTTHHHHHHHT
T ss_pred hcHH--------------HHhCchHHHHHHcC
Confidence 8766 56899998888753
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=98.01 E-value=8.9e-07 Score=79.81 Aligned_cols=142 Identities=11% Similarity=-0.007 Sum_probs=87.9
Q ss_pred ccCCCCeecccCCC---------chhhhhccCCCcccCCCchhHHHHHHHhhcccCC-Cceeeccccc--ccCC-Ccccc
Q psy7344 11 TEPHCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKN-GPLFMGPLFI--AEPH-CDGID 77 (240)
Q Consensus 11 ~~~~~d~id~N~gc---------P~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~-~p~~vk~~~~--lap~-~~~~d 77 (240)
.+.|+|.|+||+|| |..+.+...||..|++++.++.+++.++. +... .|+.+|.... ...+ .+..+
T Consensus 171 ~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr-~~vg~~~v~vrls~~~~~~~~~~~~~~ 249 (364)
T 1vyr_A 171 REAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVC-NEWSADRIGIRVSPIGTFQNVDNGPNE 249 (364)
T ss_dssp HHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHH-HHSCGGGEEEEECCSSCBTTBCCCTTH
T ss_pred HHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHH-HhcCCCcEEEEEccccccccccCCCCC
Confidence 56789999999998 77555555678779999999999999998 3542 3887752211 0000 00001
Q ss_pred c-----------cCchhhhhhhhcccce-eeeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccC-CCEEE
Q psy7344 78 I-----------NIGCPQMVAKRGHYGA-YLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGID 144 (240)
Q Consensus 78 l-----------~~gC~~~i~~~g~~ga-~l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~-~d~Id 144 (240)
+ ..| ...+.+++++-. .-...++++..++..+ ..|++.. ++. +..++.++++++ +|+|+
T Consensus 250 ~~~~~~~a~~l~~~G-~d~i~v~~~~~~~~~~~~~~~~~~v~~~~---~iPvi~~---Ggi-t~~~a~~~l~~g~aD~V~ 321 (364)
T 1vyr_A 250 EADALYLIEELAKRG-IAYLHMSETDLAGGKPYSEAFRQKVRERF---HGVIIGA---GAY-TAEKAEDLIGKGLIDAVA 321 (364)
T ss_dssp HHHHHHHHHHHHHTT-CSEEEEECCBTTBCCCCCHHHHHHHHHHC---CSEEEEE---SSC-CHHHHHHHHHTTSCSEEE
T ss_pred HHHHHHHHHHHHHhC-CCEEEEecCcccCCCcccHHHHHHHHHHC---CCCEEEE---CCc-CHHHHHHHHHCCCccEEE
Confidence 1 122 222333322100 0012356666665544 3676654 555 567788888886 99999
Q ss_pred ecCCCchhhhhcccccccccCCHHHHHHHHH
Q psy7344 145 INIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175 (240)
Q Consensus 145 in~gCP~~~~~~~g~G~~l~~~p~~i~~iv~ 175 (240)
++++ ++.||+++.++.+
T Consensus 322 ~gR~--------------~l~~P~~~~~~~~ 338 (364)
T 1vyr_A 322 FGRD--------------YIANPDLVARLQK 338 (364)
T ss_dssp ESHH--------------HHHCTTHHHHHHH
T ss_pred ECHH--------------HHhChhHHHHHHc
Confidence 9766 5689999888875
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=2.2e-06 Score=76.81 Aligned_cols=148 Identities=11% Similarity=0.077 Sum_probs=91.7
Q ss_pred cccCCCCeecccCCC---------chhhhhccCCCcccCCCchhHHHHHHHhhcccC--CCceeeccc--ccccCCCc--
Q psy7344 10 ETEPHCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSK--NGPLFMGPL--FIAEPHCD-- 74 (240)
Q Consensus 10 ~~~~~~d~id~N~gc---------P~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~--~~p~~vk~~--~~lap~~~-- 74 (240)
..+.|+|.|+||++| |..+.+...||..+.++..++.+++.++. +.. +.|+.++.. .+.....+
T Consensus 161 a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR-~avG~d~pV~vRls~~~~~~~g~~~~ 239 (349)
T 3hgj_A 161 ALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVR-EVVPRELPLFVRVSATDWGEGGWSLE 239 (349)
T ss_dssp HHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHH-HHSCTTSCEEEEEESCCCSTTSCCHH
T ss_pred HHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHH-HHhcCCceEEEEeccccccCCCCCHH
Confidence 445789999999999 99877777899889999999999999988 354 567777521 11100000
Q ss_pred -cccc-----cCchhhhhhhh-ccccee--e----eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccC-C
Q psy7344 75 -GIDI-----NIGCPQMVAKR-GHYGAY--L----QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-C 140 (240)
Q Consensus 75 -~~dl-----~~gC~~~i~~~-g~~ga~--l----~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~-~ 140 (240)
.+.+ ..| ...+.++ |++... . ..+++++..+...+ ..|++.. +...+..++.+.++++ +
T Consensus 240 ~~~~la~~L~~~G-vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~---~iPVi~~---Ggi~t~e~a~~~l~~G~a 312 (349)
T 3hgj_A 240 DTLAFARRLKELG-VDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRV---GLRTGAV---GLITTPEQAETLLQAGSA 312 (349)
T ss_dssp HHHHHHHHHHHTT-CCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHH---CCEEEEC---SSCCCHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHcC-CCEEEEecCCcCcccccCCCccccHHHHHHHHHHc---CceEEEE---CCCCCHHHHHHHHHCCCc
Confidence 0000 112 1222222 111100 0 01345555555443 3566543 5555556677888886 9
Q ss_pred CEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhh
Q psy7344 141 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM 179 (240)
Q Consensus 141 d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~ 179 (240)
|.|.++++ ++.||+++.++.+.+..
T Consensus 313 D~V~iGR~--------------~lanPdl~~k~~~~l~~ 337 (349)
T 3hgj_A 313 DLVLLGRV--------------LLRDPYFPLRAAKALGV 337 (349)
T ss_dssp SEEEESTH--------------HHHCTTHHHHHHHHTTC
T ss_pred eEEEecHH--------------HHhCchHHHHHHHHCCC
Confidence 99999776 67899999999887643
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=97.94 E-value=9.2e-07 Score=79.70 Aligned_cols=139 Identities=13% Similarity=0.030 Sum_probs=87.3
Q ss_pred cccCCCCeecccCCC---------chhhhhccCCCcccCCCchhHHHHHHHhhcccC-CCceeeccccc--ccCCCcccc
Q psy7344 10 ETEPHCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSK-NGPLFMGPLFI--AEPHCDGID 77 (240)
Q Consensus 10 ~~~~~~d~id~N~gc---------P~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~-~~p~~vk~~~~--lap~~~~~d 77 (240)
..+.|+|.|+||++| |.-+-+...||..|.++..++.+++.++. +.. ..|+.++..-. ...+.+...
T Consensus 162 a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr-~~vg~~~v~vRls~~~~~~g~~~~~~ 240 (362)
T 4ab4_A 162 AKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAI-EVWGAQRVGVHLAPRADAHDMGDADR 240 (362)
T ss_dssp HHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHH-HHHCGGGEEEEECTTCCSSSCCCTTH
T ss_pred HHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHH-HhcCCCceEEEeeccccccccCCCCc
Confidence 456789999999999 97666666788889999999999999998 354 23887763211 011100000
Q ss_pred c-----------cCchhhhhhhhcccceeeeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccC-CCEEEe
Q psy7344 78 I-----------NIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDI 145 (240)
Q Consensus 78 l-----------~~gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~-~d~Idi 145 (240)
. ..| ...+.+++++ ..++++..++..+ ..|+++. ++. +..++.++++++ +|.|.+
T Consensus 241 ~~~~~~la~~l~~~G-vd~i~v~~~~-----~~~~~~~~ik~~~---~iPvi~~---Ggi-t~e~a~~~l~~g~aD~V~i 307 (362)
T 4ab4_A 241 AETFTYVARELGKRG-IAFICSRERE-----ADDSIGPLIKEAF---GGPYIVN---ERF-DKASANAALASGKADAVAF 307 (362)
T ss_dssp HHHHHHHHHHHHHTT-CSEEEEECCC-----CTTCCHHHHHHHH---CSCEEEE---SSC-CHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHHHHHHhC-CCEEEECCCC-----CCHHHHHHHHHHC---CCCEEEe---CCC-CHHHHHHHHHcCCccEEEE
Confidence 0 111 1112222211 1125566665544 3677655 455 666777888875 999999
Q ss_pred cCCCchhhhhcccccccccCCHHHHHHHHHH
Q psy7344 146 NIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176 (240)
Q Consensus 146 n~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~ 176 (240)
+++ ++.||+++.++.+.
T Consensus 308 GR~--------------~lanPdl~~k~~~g 324 (362)
T 4ab4_A 308 GVP--------------FIANPDLPARLAAD 324 (362)
T ss_dssp SHH--------------HHHCTTHHHHHHTT
T ss_pred CHH--------------hHhCcHHHHHHHcC
Confidence 776 67899988887764
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=97.93 E-value=1.3e-06 Score=78.65 Aligned_cols=142 Identities=12% Similarity=0.047 Sum_probs=87.9
Q ss_pred cccCCCCeecccCCC---------chhhhhccCCCcccCCCchhHHHHHHHhhcccC-CCceeeccccc--ccCCCcccc
Q psy7344 10 ETEPHCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSK-NGPLFMGPLFI--AEPHCDGID 77 (240)
Q Consensus 10 ~~~~~~d~id~N~gc---------P~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~-~~p~~vk~~~~--lap~~~~~d 77 (240)
..+.|+|.|+||++| |..+-+...||..|.+...++.+++.++. +.. ..|+.++..-. ...+.+...
T Consensus 170 A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr-~~vg~~~v~vRls~~~~~~g~~~~~~ 248 (361)
T 3gka_A 170 ARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAI-DVWSAARVGVHLAPRGDAHTMGDSDP 248 (361)
T ss_dssp HHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHH-HHHCGGGEEEEECTTCCSSSCCCSCH
T ss_pred HHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHH-HHcCCCeEEEecccccccCCCCCCCc
Confidence 456789999999999 98777666788889999999999999998 354 23877763211 011110000
Q ss_pred cc-Cc-hhhhhhhhcccce-ee--e---CChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccC-CCEEEecCC
Q psy7344 78 IN-IG-CPQMVAKRGHYGA-YL--Q---DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIG 148 (240)
Q Consensus 78 l~-~g-C~~~i~~~g~~ga-~l--~---~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~-~d~Idin~g 148 (240)
.. +. ..+.+. ..|. ++ . ..++++..++..+ ..|++.. ++. +..++.++++++ +|.|.++++
T Consensus 249 ~~~~~~la~~l~---~~Gvd~i~v~~~~~~~~~~~~ik~~~---~iPvi~~---Ggi-t~e~a~~~l~~G~aD~V~iGR~ 318 (361)
T 3gka_A 249 AATFGHVARELG---RRRIAFLFARESFGGDAIGQQLKAAF---GGPFIVN---ENF-TLDSAQAALDAGQADAVAWGKL 318 (361)
T ss_dssp HHHHHHHHHHHH---HTTCSEEEEECCCSTTCCHHHHHHHH---CSCEEEE---SSC-CHHHHHHHHHTTSCSEEEESHH
T ss_pred HHHHHHHHHHHH---HcCCCEEEECCCCCCHHHHHHHHHHc---CCCEEEe---CCC-CHHHHHHHHHcCCccEEEECHH
Confidence 00 00 001111 1122 22 1 1235556655544 3677655 445 666777888875 999999776
Q ss_pred CchhhhhcccccccccCCHHHHHHHHHH
Q psy7344 149 CPQMVAKRGHYGAYLQDDWPLLTNLVYS 176 (240)
Q Consensus 149 CP~~~~~~~g~G~~l~~~p~~i~~iv~~ 176 (240)
++.||+++.++.+.
T Consensus 319 --------------~ladPdl~~k~~~g 332 (361)
T 3gka_A 319 --------------FIANPDLPRRFKLN 332 (361)
T ss_dssp --------------HHHCTTHHHHHHHT
T ss_pred --------------hHhCcHHHHHHHhC
Confidence 67899998888764
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=3.1e-06 Score=75.79 Aligned_cols=143 Identities=9% Similarity=-0.030 Sum_probs=78.6
Q ss_pred CCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeeccccccc--------------CCCcccc--
Q psy7344 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAE--------------PHCDGID-- 77 (240)
Q Consensus 14 ~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~la--------------p~~~~~d-- 77 (240)
++|.|+||++||..+ .+..++.+++++.+++.++. +..+.|+++|..-.+. ...+.+-
T Consensus 155 ~ad~ielNiScPn~~-----g~~~l~~~~~~~~~i~~~v~-~~~~~pv~vK~~p~~~~~~~~~~~~~~~~~~~~~~i~~i 228 (354)
T 3tjx_A 155 KGVILELNLSCPNVP-----GKPQVAYDFDAMRQCLTAVS-EVYPHSFGVKMPPYFDFAAFDAAAEILNEFPKVQFITCI 228 (354)
T ss_dssp HCCEEEEECC--------------CTTSHHHHHHHHHHHH-HHCCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEEEC
T ss_pred CCCEEEeeeCCCCCc-----chhhhccCHHHHHHHHHHHH-HHhhcccccccCCCCCchhHHHHHHHHHhhcccchhhee
Confidence 578999999999765 35678999999999999998 5778898887321110 0000000
Q ss_pred --------ccCchhhhhhhhc--ccceee-eCChhhHHHhhhcccC--CCCceeEEeecCCHHHHHHHHHHHccCCCEEE
Q psy7344 78 --------INIGCPQMVAKRG--HYGAYL-QDDWPLLTELGFKTRS--HMCGHSLMFCGNDSKNLTEAAKLAEPHCDGID 144 (240)
Q Consensus 78 --------l~~gC~~~i~~~g--~~ga~l-~~d~eli~~i~~~~~~--~~~pvivqi~g~d~~~~~~aa~~le~~~d~Id 144 (240)
+..+ ......+. ++|.+. ...+++..+++..+.. ...|+| +.+++.+..++.+++..|++.|+
T Consensus 229 ~t~~~~~~id~~-~~~~~~~~~~~~GGlSG~~~~~~a~~~v~~~~~~~~~~pII---g~GGI~s~~Da~e~i~aGAs~Vq 304 (354)
T 3tjx_A 229 NSIGNGLVIDAE-TESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCPGKLIF---GCGGVYTGEDAFLHVLAGASMVQ 304 (354)
T ss_dssp CCEEEEECEETT-TTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHCTTSEEE---EESSCCSHHHHHHHHHHTEEEEE
T ss_pred cccccccccccc-cccccccCcccccccCchhhHHHHHHHHHHHHHhcCCCcEE---EeCCcCCHHHHHHHHHcCCCEEE
Confidence 0000 00001111 122222 2334444444333321 134544 44888899999999988999999
Q ss_pred ecCCCchhhhhcccccccccCCHHHHHHHHHHhhh
Q psy7344 145 INIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM 179 (240)
Q Consensus 145 in~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~ 179 (240)
|..+- +...|+.+.+|++.+.+
T Consensus 305 v~Ta~-------------~y~GP~~~~~I~~~L~~ 326 (354)
T 3tjx_A 305 VGTAL-------------QEEGPSIFERLTSELLG 326 (354)
T ss_dssp ECHHH-------------HHHCTTHHHHHHHHHHH
T ss_pred EChhh-------------hhcCchHHHHHHHHHHH
Confidence 96551 12467788888776654
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=7.6e-05 Score=66.33 Aligned_cols=132 Identities=13% Similarity=-0.030 Sum_probs=84.1
Q ss_pred ecccccccCCCccccccCchhhhhhhhcccceeeeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccC--C
Q psy7344 63 MGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH--C 140 (240)
Q Consensus 63 vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~--~ 140 (240)
++.+.+++||...++..+. ..++..++.+.+...+++...+.+...+....|+.+++ +.+++.+..+..+++.+ +
T Consensus 45 l~~Pi~~a~mag~s~~~la--~a~~~~gg~g~~~~~~~~~~~~~i~~~~~~g~~v~v~~-g~~~~~~~~a~~~~~~g~~~ 121 (336)
T 1ypf_A 45 FKLPVVPANMQTIIDERIA--TYLAENNYFYIMHRFQPEKRISFIRDMQSRGLIASISV-GVKEDEYEFVQQLAAEHLTP 121 (336)
T ss_dssp ESSSEEECSSTTTCCHHHH--HHHHHTTCCCCCCCSSGGGHHHHHHHHHHTTCCCEEEE-CCSHHHHHHHHHHHHTTCCC
T ss_pred ecCcEEECCCCCCChHHHH--HHHHhCCCEEEecCCCCHHHHHHHHHHHhcCCeEEEeC-CCCHHHHHHHHHHHhcCCCC
Confidence 3445677899988876663 34555556555555555555544433333345888885 55666665554555667 8
Q ss_pred CEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeE
Q psy7344 141 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 141 d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~i 219 (240)
+.|++|.+. | ++....++++++++. ++.|+.+|..+. +.+.++.+++ |+|+|
T Consensus 122 ~~i~i~~~~----------G-----~~~~~~~~i~~lr~~-----------~~~~~vi~G~v~-s~e~A~~a~~aGad~I 174 (336)
T 1ypf_A 122 EYITIDIAH----------G-----HSNAVINMIQHIKKH-----------LPESFVIAGNVG-TPEAVRELENAGADAT 174 (336)
T ss_dssp SEEEEECSS----------C-----CSHHHHHHHHHHHHH-----------CTTSEEEEEEEC-SHHHHHHHHHHTCSEE
T ss_pred CEEEEECCC----------C-----CcHHHHHHHHHHHHh-----------CCCCEEEECCcC-CHHHHHHHHHcCCCEE
Confidence 999998751 1 555666777777776 433444454333 3578889999 99999
Q ss_pred EE--ecc
Q psy7344 220 TE--LGK 224 (240)
Q Consensus 220 ti--h~R 224 (240)
++ |++
T Consensus 175 vvs~hgG 181 (336)
T 1ypf_A 175 KVGIGPG 181 (336)
T ss_dssp EECSSCS
T ss_pred EEecCCC
Confidence 99 775
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=1.1e-05 Score=73.55 Aligned_cols=145 Identities=11% Similarity=0.015 Sum_probs=87.7
Q ss_pred cccCCCCeecccCCC---------chhhhhccCCCcccCCCchhHHHHHHHhhcccC-CCceeecccc--cccCCCcccc
Q psy7344 10 ETEPHCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSK-NGPLFMGPLF--IAEPHCDGID 77 (240)
Q Consensus 10 ~~~~~~d~id~N~gc---------P~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~-~~p~~vk~~~--~lap~~~~~d 77 (240)
..+.|+|.|+||+|| |..+-+...||..|++++.++.+++.++. +.. ..|+.+|... ....+.+..+
T Consensus 180 a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr-~avg~~~V~vRls~~~~~~g~~~~~~ 258 (402)
T 2hsa_B 180 AIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVV-SAIGADRVGVRVSPAIDHLDAMDSNP 258 (402)
T ss_dssp HHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHH-HHHCGGGEEEEECSSCCSTTCCCSCH
T ss_pred HHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHH-HHhCCCcEEEEeccccccCCCCCCCC
Confidence 456789999999997 98766666688789999999999999998 344 3488776321 1101111000
Q ss_pred c-----------cCch-----hhhhhhhccccee-e--e--------CChhhHHHhhhcccCCCCceeEEeecCCHHHHH
Q psy7344 78 I-----------NIGC-----PQMVAKRGHYGAY-L--Q--------DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLT 130 (240)
Q Consensus 78 l-----------~~gC-----~~~i~~~g~~ga~-l--~--------~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~ 130 (240)
+ ..|. ...+.+++++... . . .+++++..++..+ ..|+++. ++. +..
T Consensus 259 ~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~---~iPvi~~---G~i-~~~ 331 (402)
T 2hsa_B 259 LSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAY---QGTFICS---GGY-TRE 331 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHHHHHC---SSCEEEE---SSC-CHH
T ss_pred HHHHHHHHHHHHhcCCccCCceEEEEEecCccccccCCccccccCCcchHHHHHHHHHHC---CCCEEEe---CCC-CHH
Confidence 0 1110 1122222221000 0 0 1133444444433 3677655 566 667
Q ss_pred HHHHHHccC-CCEEEecCCCchhhhhcccccccccCCHHHHHHHHHH
Q psy7344 131 EAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176 (240)
Q Consensus 131 ~aa~~le~~-~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~ 176 (240)
++.++++++ +|.|+++++ ++.||+++.++.+.
T Consensus 332 ~a~~~l~~g~aD~V~igR~--------------~l~dP~l~~k~~~g 364 (402)
T 2hsa_B 332 LGIEAVAQGDADLVSYGRL--------------FISNPDLVMRIKLN 364 (402)
T ss_dssp HHHHHHHTTSCSEEEESHH--------------HHHCTTHHHHHHHT
T ss_pred HHHHHHHCCCCceeeecHH--------------HHhCchHHHHHHhC
Confidence 788888885 999999776 67899999888753
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.79 E-value=6.1e-06 Score=72.90 Aligned_cols=53 Identities=15% Similarity=0.046 Sum_probs=38.9
Q ss_pred cccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccc
Q psy7344 8 RIETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLF 67 (240)
Q Consensus 8 ~~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~ 67 (240)
|+.++.|++.|... ||+++..+...|+++|++|+.+.+|.. +.+.|++.|.+.
T Consensus 31 ~~ae~aGA~aI~~l--~~v~~d~~~~~G~arm~~p~~i~~I~~-----av~iPV~~K~ri 83 (330)
T 2yzr_A 31 QIAEEAGAVAVMAL--ERVPADIRAAGGVARMSDPALIEEIMD-----AVSIPVMAKCRI 83 (330)
T ss_dssp HHHHHHTCSEEEEC--SSCHHHHC--CCCCCCCCHHHHHHHHH-----HCSSCEEEEEET
T ss_pred HHHHHcCCCEEEec--CCccccccCCcchhhcCCHHHHHHHHH-----hcCCCeEEEEee
Confidence 44556678887222 299999999999999999999777643 457999988654
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=1.2e-05 Score=72.51 Aligned_cols=130 Identities=11% Similarity=0.082 Sum_probs=78.7
Q ss_pred cccCCCCeecccCCCchh-----------------hhhc-----cCCCccc---C--CCchhHHHHHHHhhcccCCCcee
Q psy7344 10 ETEPHCDGIDINIGCPQM-----------------VAKR-----GHYGAYL---Q--DDWPLLTELVVHFSWVSKNGPLF 62 (240)
Q Consensus 10 ~~~~~~d~id~N~gcP~~-----------------kv~k-----~~~G~~l---~--~~~~l~~~iv~ql~~~~~~~p~~ 62 (240)
..+.+++.|+||++||+. +..+ ...|+.+ + .++++..+.+.++. +..+.|++
T Consensus 155 a~~aG~~ai~it~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~g~~l~~~~~~~d~~~~~~~i~~lr-~~~~~Pvi 233 (368)
T 2nli_A 155 AKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMSLNNIYGASKQKISPRDIEEIA-GHSGLPVF 233 (368)
T ss_dssp HHHTTCSCEEEESBCC---CBC--------CCSCCHHHHHHHTTSGGGC-----CTTBCSBCCHHHHHHHH-HHSSSCEE
T ss_pred HHHCCCCEEEEcCCCCcccchhHHHhhcccCcchhhhhhcccccCCCCchHHhhhhccCchhhHHHHHHHH-HHcCCCEE
Confidence 345689999999999982 2221 2345554 4 37888888899998 45688998
Q ss_pred ecccccccCCCccccccCchhhhhhhhcccceee---eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccC
Q psy7344 63 MGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYL---QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH 139 (240)
Q Consensus 63 vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l---~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~ 139 (240)
+|-. ..+.....-...| ...|.++++.|..+ ..+++.+.+++..+. .+.|++.. +++.+..++++++..|
T Consensus 234 vK~v--~~~e~a~~a~~~G-ad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~-~~ipVia~---GGI~~g~D~~kalalG 306 (368)
T 2nli_A 234 VKGI--QHPEDADMAIKRG-ASGIWVSNHGARQLYEAPGSFDTLPAIAERVN-KRVPIVFD---SGVRRGEHVAKALASG 306 (368)
T ss_dssp EEEE--CSHHHHHHHHHTT-CSEEEECCGGGTSCSSCCCHHHHHHHHHHHHT-TSSCEEEC---SSCCSHHHHHHHHHTT
T ss_pred EEcC--CCHHHHHHHHHcC-CCEEEEcCCCcCCCCCCCChHHHHHHHHHHhC-CCCeEEEE---CCCCCHHHHHHHHHcC
Confidence 8721 1110000001344 33444422222111 334677777766553 24677655 8888888999999999
Q ss_pred CCEEEecC
Q psy7344 140 CDGIDINI 147 (240)
Q Consensus 140 ~d~Idin~ 147 (240)
+|+|+|++
T Consensus 307 Ad~V~iGr 314 (368)
T 2nli_A 307 ADVVALGR 314 (368)
T ss_dssp CSEEEECH
T ss_pred CCEEEECH
Confidence 99999986
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.60 E-value=1.2e-05 Score=73.76 Aligned_cols=149 Identities=12% Similarity=-0.013 Sum_probs=90.3
Q ss_pred cccCCCCeecccCCC---------chhhhhccCCCccc-CCCchhHHHHHHHhhcccC------CCceeeccc--ccccC
Q psy7344 10 ETEPHCDGIDINIGC---------PQMVAKRGHYGAYL-QDDWPLLTELVVHFSWVSK------NGPLFMGPL--FIAEP 71 (240)
Q Consensus 10 ~~~~~~d~id~N~gc---------P~~kv~k~~~G~~l-~~~~~l~~~iv~ql~~~~~------~~p~~vk~~--~~lap 71 (240)
..+-|+|.|+||+|| |.-..+...||..+ .+...++.+++.++. +.. +-|+.++.. ....+
T Consensus 179 A~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~yGGs~lenR~Rf~~evv~aVr-~~v~~~~~~~f~v~vRis~~~~~~~ 257 (419)
T 3l5a_A 179 AIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLEVMRAVQ-EVIDKEAPDNFILGFRATPEETRGS 257 (419)
T ss_dssp HHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSTTCHHHHHHHHHHHHHHHH-HHHHHHCCTTCEEEEEECSCEEETT
T ss_pred HHHcCCCEEEECCccchHHHHccCCcccccccCCCCchhhhhhHHHHHHHHHHH-HHHhhhcCCCeeEEEecccccccCC
Confidence 446789999999999 97666555677777 888999999999888 343 346666521 11111
Q ss_pred ---C--Cccccc-----c-Cchhhhhhhhcccce---e----e-e-CChhhHHHhhhcccCCCCceeEEeecCCHHHHHH
Q psy7344 72 ---H--CDGIDI-----N-IGCPQMVAKRGHYGA---Y----L-Q-DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTE 131 (240)
Q Consensus 72 ---~--~~~~dl-----~-~gC~~~i~~~g~~ga---~----l-~-~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~ 131 (240)
+ .+..++ . .| ...+.++++... + . . .+++++..++..+. ...||++. +++.+..+
T Consensus 258 ~~G~~~ed~~~la~~L~~~~G-vd~I~vs~g~~~~~~~~~~~~g~~~~~~~a~~Ik~~v~-~~iPVI~~---GgI~t~e~ 332 (419)
T 3l5a_A 258 DLGYTIDEFNQLIDWVMDVSN-IQYLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYEHLA-GRIPLIAS---GGINSPES 332 (419)
T ss_dssp EEEECHHHHHHHHHHHHHHSC-CCCEEECCTTCCGGGCBCCCSSTTTTSBHHHHHHHHHT-TSSCEEEC---SSCCSHHH
T ss_pred CCCCCHHHHHHHHHHHHhhcC-CcEEEEeeCCccccccccCCCCccccHHHHHHHHHHcC-CCCeEEEE---CCCCCHHH
Confidence 0 011111 2 33 233333433210 0 0 0 13456666554432 13676654 55556667
Q ss_pred HHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhh
Q psy7344 132 AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM 179 (240)
Q Consensus 132 aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~ 179 (240)
+.+++++ +|.|.++++ ++.||+++.++.+...+
T Consensus 333 Ae~~L~~-aDlVaiGR~--------------~IanPdlv~ki~~G~~~ 365 (419)
T 3l5a_A 333 ALDALQH-ADMVGMSSP--------------FVTEPDFVHKLAEQRPH 365 (419)
T ss_dssp HHHHGGG-CSEEEESTH--------------HHHCTTHHHHHHTTCGG
T ss_pred HHHHHHh-CCcHHHHHH--------------HHHCcHHHHHHHcCCcc
Confidence 7778878 999999777 67899999888875443
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00019 Score=63.54 Aligned_cols=122 Identities=11% Similarity=-0.051 Sum_probs=74.2
Q ss_pred cccccCCCccccccCchhhhhhhhcccceeee--CChhhHHHhhhcccC-CCCceeEEeecCCHHHHHHHHHHH-ccCCC
Q psy7344 66 LFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQ--DDWPLLTELGFKTRS-HMCGHSLMFCGNDSKNLTEAAKLA-EPHCD 141 (240)
Q Consensus 66 ~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~--~d~eli~~i~~~~~~-~~~pvivqi~g~d~~~~~~aa~~l-e~~~d 141 (240)
+.+.+||.+.++..+. ..+...|..|.... .+++.+.+....++. .+.|+.+++...++. +.+.++.+ +.++|
T Consensus 14 Pii~apM~g~s~~~la--~av~~aG~lG~i~~~~~~~~~~~~~i~~i~~~~~~p~gvnl~~~~~~-~~~~~~~a~~~g~d 90 (332)
T 2z6i_A 14 PIFQGGMAWVADGDLA--GAVSKAGGLGIIGGGNAPKEVVKANIDKIKSLTDKPFGVNIMLLSPF-VEDIVDLVIEEGVK 90 (332)
T ss_dssp SEEECCCTTTCCHHHH--HHHHHHTSBEEEECTTCCHHHHHHHHHHHHHHCCSCEEEEECTTSTT-HHHHHHHHHHTTCS
T ss_pred CEEeCCCCCCCcHHHH--HHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecCCCCC-HHHHHHHHHHCCCC
Confidence 3466899876655553 44555554344321 234444433322221 246899999875544 44555554 55899
Q ss_pred EEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEE
Q psy7344 142 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLT 220 (240)
Q Consensus 142 ~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~it 220 (240)
+|.++.|||.. +++.+++ ..+|+.+|+. +.+.++.+++ |+|+|.
T Consensus 91 ~V~~~~g~p~~--------------------~i~~l~~------------~g~~v~~~v~---~~~~a~~~~~~GaD~i~ 135 (332)
T 2z6i_A 91 VVTTGAGNPSK--------------------YMERFHE------------AGIIVIPVVP---SVALAKRMEKIGADAVI 135 (332)
T ss_dssp EEEECSSCGGG--------------------THHHHHH------------TTCEEEEEES---SHHHHHHHHHTTCSCEE
T ss_pred EEEECCCChHH--------------------HHHHHHH------------cCCeEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 99999998732 2333333 2468888763 3456778888 999999
Q ss_pred Eeccc
Q psy7344 221 ELGKM 225 (240)
Q Consensus 221 ih~R~ 225 (240)
++++.
T Consensus 136 v~g~~ 140 (332)
T 2z6i_A 136 AEGME 140 (332)
T ss_dssp EECTT
T ss_pred EECCC
Confidence 99873
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00024 Score=62.13 Aligned_cols=101 Identities=7% Similarity=-0.065 Sum_probs=73.8
Q ss_pred CCceeEEe---ecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCC
Q psy7344 114 MCGHSLMF---CGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHC 189 (240)
Q Consensus 114 ~~pvivqi---~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~ 189 (240)
+.|+++.+ .|.+++...+.++.+++ |+++|.|.-++..++..|. .|..|....+.+.+|..++...
T Consensus 78 ~~PviaD~d~Gyg~~~~~~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~-~gk~L~p~~~~~~~I~Aa~~a~--------- 147 (295)
T 1xg4_A 78 SLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGHR-PNKAIVSKEEMVDRIRAAVDAK--------- 147 (295)
T ss_dssp CSCEEEECTTCSSSSHHHHHHHHHHHHHHTCSEEEEECBCSSCCCTTS-SSCCBCCHHHHHHHHHHHHHHC---------
T ss_pred CCCEEecCCcccCCCHHHHHHHHHHHHHcCCeEEEECCCCCCcccCCC-CCCccCCHHHHHHHHHHHHHhc---------
Confidence 46999998 34488888888887765 8999999999854543333 2455777777777777666655
Q ss_pred CCCCeeeEEeeeh--------hcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 190 DGNDINIGCPQMV--------AKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 190 ~~~~~pvsvK~r~--------~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
...++.++-|. +..++-++++++ |||.|.+|+++.
T Consensus 148 --~~~~~~i~aRtda~~~~gl~~ai~ra~ay~eAGAd~i~~e~~~~ 191 (295)
T 1xg4_A 148 --TDPDFVIMARTDALAVEGLDAAIERAQAYVEAGAEMLFPEAITE 191 (295)
T ss_dssp --SSTTSEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEETTCCS
T ss_pred --cCCCcEEEEecHHhhhcCHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23456666662 467788888999 999999999874
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00015 Score=65.29 Aligned_cols=97 Identities=4% Similarity=-0.158 Sum_probs=60.1
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
+.|++.+|...... .++.+.++. ++|++.++.-..+......|- .++....+.++++++. +
T Consensus 144 ~~~~ianig~~~~~--e~~~~~ve~~~adal~ihln~~qe~~~p~Gd-----~~~~~~~~~I~~l~~~-----------~ 205 (365)
T 3sr7_A 144 HLLLATNIGLDKPY--QAGLQAVRDLQPLFLQVHINLMQELLMPEGE-----REFRSWKKHLSDYAKK-----------L 205 (365)
T ss_dssp -CCEEEEEETTSCH--HHHHHHHHHHCCSCEEEEECHHHHHTSSSSC-----CCCHHHHHHHHHHHHH-----------C
T ss_pred CCcEEEEeCCCCCH--HHHHHHHHhcCCCEEEEeccccccccCCCCC-----CcHHHHHHHHHHHHHh-----------h
Confidence 46788888654322 244455543 677777766643433332221 3443444667777776 7
Q ss_pred CeeeEEeee-hhcHHHHHHHHhC-CCCeEEEecccccc
Q psy7344 193 DINIGCPQM-VAKRGHYGAYLQD-DWPLLTELGKMAML 228 (240)
Q Consensus 193 ~~pvsvK~r-~~~~~~~~~~l~~-G~~~itih~R~~~~ 228 (240)
++||.+|.- +..+.+.++.+++ |+|+|+++++...+
T Consensus 206 ~~PVivK~vg~g~s~e~A~~l~~aGad~I~V~g~GGt~ 243 (365)
T 3sr7_A 206 QLPFILKEVGFGMDVKTIQTAIDLGVKTVDISGRGGTS 243 (365)
T ss_dssp CSCEEEEECSSCCCHHHHHHHHHHTCCEEECCCBC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCcc
Confidence 889999953 3456678999999 99999998875543
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00015 Score=65.42 Aligned_cols=144 Identities=10% Similarity=-0.004 Sum_probs=81.4
Q ss_pred ecccccccCCCccccccC----chhhhhhhhc---cccee--eeCChhhHHHh--hhcccCCCCceeEEeec------CC
Q psy7344 63 MGPLFIAEPHCDGIDINI----GCPQMVAKRG---HYGAY--LQDDWPLLTEL--GFKTRSHMCGHSLMFCG------ND 125 (240)
Q Consensus 63 vk~~~~lap~~~~~dl~~----gC~~~i~~~g---~~ga~--l~~d~eli~~i--~~~~~~~~~pvivqi~g------~d 125 (240)
++.+.+++||.+.++.++ .-.+.....| ..|+. ...++++.... +.+..+ +.|++.++.. .+
T Consensus 58 l~~Pv~ia~MtGgt~~~~~in~~la~~a~~~G~~~~vGs~~~~l~~~~~~~s~~~vr~~ap-~~~~~anlg~~ql~~~~~ 136 (368)
T 3vkj_A 58 ISVPVMVTGMTGGRNELGRINKIIAEVAEKFGIPMGVGSQRVAIEKAEARESFAIVRKVAP-TIPIIANLGMPQLVKGYG 136 (368)
T ss_dssp ESSSEEECCCCCSSHHHHHHHHHHHHHHHHHTCCEECCCCHHHHHCGGGSHHHHHHHHHCS-SSCEEEEEEGGGGGTTCC
T ss_pred ccCCeEEecCCCCCchhhHHHHHHHHHHHHhCCCeeeecchhccCCHHHHhhHHHHHHhCc-CcceecCcCeeecCCCCC
Confidence 345678899988876542 1012222221 11121 11144443322 222222 4677777654 56
Q ss_pred HHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHH-HHHHHHHHhhhccccccCCCCCCCCeeeEEeee-hh
Q psy7344 126 SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP-LLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-VA 203 (240)
Q Consensus 126 ~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~-~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-~~ 203 (240)
++...+++++++.++..|++| |...+... .|. .|+. ...+.++++++. +++||.+|.- ..
T Consensus 137 ~~~~~~av~~~~a~al~Ihln---~~~~~~~p-~g~---~~~~~~~~~~i~~i~~~-----------~~vPVivK~vG~g 198 (368)
T 3vkj_A 137 LKEFQDAIQMIEADAIAVHLN---PAQEVFQP-EGE---PEYQIYALEKLRDISKE-----------LSVPIIVKESGNG 198 (368)
T ss_dssp HHHHHHHHHHTTCSEEEEECC---HHHHHHSS-SCC---CBCBTHHHHHHHHHHTT-----------CSSCEEEECSSSC
T ss_pred HHHHHHHHHHhcCCCeEEEec---chhhhhCC-CCC---chhhHHHHHHHHHHHHH-----------cCCCEEEEeCCCC
Confidence 788888888886666667777 33332211 111 2222 244566777766 7889999963 22
Q ss_pred cHHHHHHHHhC-CCCeEEE--eccc
Q psy7344 204 KRGHYGAYLQD-DWPLLTE--LGKM 225 (240)
Q Consensus 204 ~~~~~~~~l~~-G~~~iti--h~R~ 225 (240)
.+.+.++.+++ |+|+|+| ||.|
T Consensus 199 ~s~~~A~~l~~aGad~I~V~g~GGt 223 (368)
T 3vkj_A 199 ISMETAKLLYSYGIKNFDTSGQGGT 223 (368)
T ss_dssp CCHHHHHHHHHTTCCEEECCCBTSB
T ss_pred CCHHHHHHHHhCCCCEEEEeCCCCC
Confidence 34677899999 9999999 5554
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00014 Score=64.97 Aligned_cols=134 Identities=13% Similarity=0.126 Sum_probs=85.6
Q ss_pred CCcccccc---------CchhhhhhhhcccceeeeCChhhHHHhhhcccC---CCCceeEEeecC-------CHHHHHHH
Q psy7344 72 HCDGIDIN---------IGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRS---HMCGHSLMFCGN-------DSKNLTEA 132 (240)
Q Consensus 72 ~~~~~dl~---------~gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~~---~~~pvivqi~g~-------d~~~~~~a 132 (240)
.+|++|++ |.||..=.+.-.||..+.....++.+++.+++. .+.|+.+.|... +.+++.++
T Consensus 156 GfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~~~~~~~~ 235 (343)
T 3kru_A 156 GYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVEY 235 (343)
T ss_dssp TCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHHHHHH
T ss_pred CCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhhccCccHHHHHHH
Confidence 46788887 667654323345666554445566665554443 256899998643 47788899
Q ss_pred HHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHH
Q psy7344 133 AKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYL 212 (240)
Q Consensus 133 a~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l 212 (240)
++.+++.+|.|++..|..... ....+. ..+++.++++.+. +++||.+-.++.+..+..+.+
T Consensus 236 a~~l~~~vd~i~vs~g~~~~~--~~~~~~--~~~~~~~~~ir~~---------------~~iPVi~~Ggi~t~e~Ae~~l 296 (343)
T 3kru_A 236 INMIKDKVDLIDVSSGGLLNV--DINLYP--GYQVKYAETIKKR---------------CNIKTSAVGLITTQELAEEIL 296 (343)
T ss_dssp HHHHTTTCSEEEEECCCSSCC--CCCCCT--TTTHHHHHHHHHH---------------HTCEEEEESSCCCHHHHHHHH
T ss_pred HHHhhccccEEeccCCceEee--eecccC--ceeehHHHHHHHh---------------cCcccceeeeeeHHHHHHHHH
Confidence 999976699999954422110 000011 1356655555543 456888888887777888888
Q ss_pred hC-CCCeEEEeccc
Q psy7344 213 QD-DWPLLTELGKM 225 (240)
Q Consensus 213 ~~-G~~~itih~R~ 225 (240)
++ ++|.|.+ ||-
T Consensus 297 ~~G~aD~V~i-GR~ 309 (343)
T 3kru_A 297 SNERADLVAL-GRE 309 (343)
T ss_dssp HTTSCSEEEE-SHH
T ss_pred hchhhHHHHH-HHH
Confidence 88 7999999 885
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00024 Score=62.80 Aligned_cols=74 Identities=15% Similarity=0.082 Sum_probs=58.6
Q ss_pred HHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHH
Q psy7344 130 TEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHY 208 (240)
Q Consensus 130 ~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~ 208 (240)
.+.|+..++ |+++|+... |.+...+...|+++|.+|+.+.+|.++ +++||..|.|+.. .+-
T Consensus 27 ~e~A~~ae~aGA~aI~~l~--~v~~d~~~~~G~arm~~p~~i~~I~~a---------------v~iPV~~K~rig~-~~e 88 (330)
T 2yzr_A 27 VEQAQIAEEAGAVAVMALE--RVPADIRAAGGVARMSDPALIEEIMDA---------------VSIPVMAKCRIGH-TTE 88 (330)
T ss_dssp HHHHHHHHHHTCSEEEECS--SCHHHHC--CCCCCCCCHHHHHHHHHH---------------CSSCEEEEEETTC-HHH
T ss_pred HHHHHHHHHcCCCEEEecC--CccccccCCcchhhcCCHHHHHHHHHh---------------cCCCeEEEEeecc-hHH
Confidence 457777766 899997644 787778888899999999999999864 6889999999754 355
Q ss_pred HHHHhC-CCCeEEE
Q psy7344 209 GAYLQD-DWPLLTE 221 (240)
Q Consensus 209 ~~~l~~-G~~~iti 221 (240)
++.++. |+|.|-.
T Consensus 89 ~qilea~GaD~Id~ 102 (330)
T 2yzr_A 89 ALVLEAIGVDMIDE 102 (330)
T ss_dssp HHHHHHTTCSEEEE
T ss_pred HHHHHHcCCCEEeh
Confidence 888999 9999865
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=97.51 E-value=1.7e-05 Score=76.81 Aligned_cols=142 Identities=13% Similarity=-0.032 Sum_probs=82.1
Q ss_pred cccCCCCeecccCCCch-----------hhhhccCCCcccCCCchhHHHHHHHhhcccC--CCceeecccccccCC-Ccc
Q psy7344 10 ETEPHCDGIDINIGCPQ-----------MVAKRGHYGAYLQDDWPLLTELVVHFSWVSK--NGPLFMGPLFIAEPH-CDG 75 (240)
Q Consensus 10 ~~~~~~d~id~N~gcP~-----------~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~--~~p~~vk~~~~lap~-~~~ 75 (240)
..+.|+|.|+|+++|+. ++-+. .||..+.+...++.+++.++. +.. +.|+.++.. ...+ .+.
T Consensus 165 a~~aGfDgVeih~a~gy~L~~qFlsp~~N~R~D-~yGGs~enR~r~~~ei~~avr-~~~g~~~~v~~r~s--~~~~~~~g 240 (690)
T 3k30_A 165 SIEAGYDIVYVYGAHGYSGVHHFLSKRYNQRTD-EYGGSLENRMRLLRELLEDTL-DECAGRAAVACRIT--VEEEIDGG 240 (690)
T ss_dssp HHHHTCSEEEEEECTTCSHHHHHHCTTTCCCCS-TTSSSHHHHTHHHHHHHHHHH-HHHTTSSEEEEEEE--CCCCSTTS
T ss_pred HHHcCCCEEEEcccccchHHHHhCCCccCCCcc-ccCCCHHHHHHHHHHHHHHHH-HHhCCCceEEEEEC--ccccCCCC
Confidence 34568999999999887 44443 477779999999999999988 354 336655421 0000 011
Q ss_pred ccc----------cCchhhhhhhhcccc------e-ee--eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHH
Q psy7344 76 IDI----------NIGCPQMVAKRGHYG------A-YL--QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLA 136 (240)
Q Consensus 76 ~dl----------~~gC~~~i~~~g~~g------a-~l--~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~l 136 (240)
.+. .-+ ...+.+++++- . +. ..+++++..++..+ ..|++.. ++..+..++.+++
T Consensus 241 ~~~~~~~~~~~~l~~~-~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~pvi~~---G~i~~~~~a~~~l 313 (690)
T 3k30_A 241 ITREDIEGVLRELGEL-PDLWDFAMGSWEGDSVTSRFAPEGRQEEFVAGLKKLT---TKPVVGV---GRFTSPDAMVRQI 313 (690)
T ss_dssp CCHHHHHHHHHHHTTS-SSEEEEECSCHHHHTCCTTTCCTTTTHHHHTTSGGGC---SSCEEEC---SCCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh-cCEEEEecccccccCCCCccCCccccHHHHHHHHHHc---CCeEEEe---CCCCCHHHHHHHH
Confidence 111 001 11222222110 0 00 01134444444433 4677654 6666667778888
Q ss_pred ccC-CCEEEecCCCchhhhhcccccccccCCHHHHHHHHHH
Q psy7344 137 EPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176 (240)
Q Consensus 137 e~~-~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~ 176 (240)
+++ +|.|+++++ ++.||+++.++.+.
T Consensus 314 ~~g~~d~v~~gR~--------------~~~~P~~~~~~~~g 340 (690)
T 3k30_A 314 KAGILDLIGAARP--------------SIADPFLPNKIRDG 340 (690)
T ss_dssp HTTSCSEEEESHH--------------HHHCTTHHHHHHTT
T ss_pred HCCCcceEEEcHH--------------hHhCccHHHHHHcC
Confidence 885 999999877 45777777777654
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=4.6e-05 Score=64.01 Aligned_cols=79 Identities=5% Similarity=-0.029 Sum_probs=55.8
Q ss_pred HHHHHHccCCCEEE--ecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEee---e--h-
Q psy7344 131 EAAKLAEPHCDGID--INIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQ---M--V- 202 (240)
Q Consensus 131 ~aa~~le~~~d~Id--in~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~---r--~- 202 (240)
++.+.++.|+|+|| +|+|| .+. .+++.+.+.++++++. .. |+++|+ + +
T Consensus 75 ~~~~A~~~Gad~Id~viN~g~-----~~~-------~~~~~~~~~i~~v~~a-----------~~-pv~vKvi~e~~~l~ 130 (225)
T 1mzh_A 75 EAVEAVRDGAQELDIVWNLSA-----FKS-------EKYDFVVEELKEIFRE-----------TP-SAVHKVIVETPYLN 130 (225)
T ss_dssp HHHHHHHTTCSEEEEECCHHH-----HHT-------TCHHHHHHHHHHHHHT-----------CT-TSEEEEECCGGGCC
T ss_pred HHHHHHHcCCCEEEEEecHHH-----Hhc-------CChHHHHHHHHHHHHH-----------hc-CceEEEEEeCCCCC
Confidence 34445567999999 89998 111 3677888888988887 45 899999 4 2
Q ss_pred -hcHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 203 -AKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 203 -~~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
++..++++.+++ |+|+| +-+| .. +.+-++|+
T Consensus 131 ~~~~~~~a~~a~eaGad~I--~tst--g~--~~gga~~~ 163 (225)
T 1mzh_A 131 EEEIKKAVEICIEAGADFI--KTST--GF--APRGTTLE 163 (225)
T ss_dssp HHHHHHHHHHHHHHTCSEE--ECCC--SC--SSSCCCHH
T ss_pred HHHHHHHHHHHHHhCCCEE--EECC--CC--CCCCCCHH
Confidence 246788999999 99999 3444 33 23555653
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=2.3e-05 Score=70.96 Aligned_cols=141 Identities=9% Similarity=-0.048 Sum_probs=82.7
Q ss_pred cCCCCeecccCCC---------chhhhh-ccCCCc-ccCCCchhHHHHHHHhhcccC-CCceeecccc--cccCCCcccc
Q psy7344 12 EPHCDGIDINIGC---------PQMVAK-RGHYGA-YLQDDWPLLTELVVHFSWVSK-NGPLFMGPLF--IAEPHCDGID 77 (240)
Q Consensus 12 ~~~~d~id~N~gc---------P~~kv~-k~~~G~-~l~~~~~l~~~iv~ql~~~~~-~~p~~vk~~~--~lap~~~~~d 77 (240)
+.|+|.|+||+|| |.-.-+ ...||. .|.++..++.+++.++. +.. ..|+.++..- ....+.+..+
T Consensus 186 ~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~~~eiv~aVr-~avg~~~v~vRis~~~~~~~~~~~~~ 264 (379)
T 3aty_A 186 KAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVC-DAVGSDRVGLRISPLNGVHGMIDSNP 264 (379)
T ss_dssp TSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHHHHHHHHHHH-HHHCGGGEEEEECTTCCGGGCCCSCH
T ss_pred hcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHHHHHHHHHHH-HhcCCCeEEEEECcccccccCCCCCC
Confidence 6789999999997 665444 456777 89999999999999998 343 3477665211 1001111111
Q ss_pred c-----------cCchhhhhhhhcccceeeeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccC-CCEEEe
Q psy7344 78 I-----------NIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDI 145 (240)
Q Consensus 78 l-----------~~gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~-~d~Idi 145 (240)
. ..| ...+.+++++-..-....+ +..++..+ ..|++.. ++. +..++.++++++ +|.|++
T Consensus 265 ~~~~~~la~~l~~~G-vd~i~v~~~~~~~~~~~~~-~~~ir~~~---~iPvi~~---G~i-t~~~a~~~l~~g~aD~V~i 335 (379)
T 3aty_A 265 EALTKHLCKKIEPLS-LAYLHYLRGDMVNQQIGDV-VAWVRGSY---SGVKISN---LRY-DFEEADQQIREGKVDAVAF 335 (379)
T ss_dssp HHHHHHHHHHHGGGC-CSEEEEECSCTTSCCCCCH-HHHHHTTC---CSCEEEE---SSC-CHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHHHHHHhC-CCEEEEcCCCcCCCCccHH-HHHHHHHC---CCcEEEE---CCC-CHHHHHHHHHcCCCeEEEe
Confidence 1 112 1122222211000000123 44444433 3676654 555 566778888875 999999
Q ss_pred cCCCchhhhhcccccccccCCHHHHHHHHHH
Q psy7344 146 NIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176 (240)
Q Consensus 146 n~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~ 176 (240)
+++ ++.||+++.++.+.
T Consensus 336 gR~--------------~l~~P~l~~k~~~g 352 (379)
T 3aty_A 336 GAK--------------FIANPDLVERAQQN 352 (379)
T ss_dssp SHH--------------HHHCTTHHHHHHHT
T ss_pred cHH--------------HHhCcHHHHHHHcC
Confidence 776 67899998888753
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=1.5e-05 Score=72.53 Aligned_cols=130 Identities=10% Similarity=0.003 Sum_probs=77.5
Q ss_pred ccCCCCeecccCCCchh---------------hh-hcc--------------CCCc---ccCC---CchhHHHHHHHhhc
Q psy7344 11 TEPHCDGIDINIGCPQM---------------VA-KRG--------------HYGA---YLQD---DWPLLTELVVHFSW 54 (240)
Q Consensus 11 ~~~~~d~id~N~gcP~~---------------kv-~k~--------------~~G~---~l~~---~~~l~~~iv~ql~~ 54 (240)
...+++.++||++||+. ++ .++ ..|+ .++. ||++..+.+.++.
T Consensus 170 ~~~G~~al~itvd~p~~g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~g~~~~~~~~~~~d~~~~~~~i~~lr- 248 (392)
T 2nzl_A 170 EKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLR- 248 (392)
T ss_dssp HHTTCCCEEEECSCSSCCCCHHHHHHTCCCCTTCCCTTC-----------------CHHHHHHHHBCTTCCHHHHHHHC-
T ss_pred HHCCCCEEEEeCCCCCccchhHhHhhccCCccccchhhhhhhhcccCccccccCcchHHHHHhhcCChHHHHHHHHHHH-
Confidence 45689999999999995 33 010 1222 3444 8887788899998
Q ss_pred ccCCCceeecccccccCCCccccccCchhhhhhhhcccceee---eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHH
Q psy7344 55 VSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYL---QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTE 131 (240)
Q Consensus 55 ~~~~~p~~vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l---~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~ 131 (240)
+..+.|+.+|-. ..+.....-...| +..|.++++.|..+ ...++.+.++...+.. +.||++. +++.+..+
T Consensus 249 ~~~~~PvivKgv--~~~e~A~~a~~aG-ad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~~-~ipVia~---GGI~~g~D 321 (392)
T 2nzl_A 249 RLTSLPIVAKGI--LRGDDAREAVKHG-LNGILVSNHGARQLDGVPATIDVLPEIVEAVEG-KVEVFLD---GGVRKGTD 321 (392)
T ss_dssp --CCSCEEEEEE--CCHHHHHHHHHTT-CCEEEECCGGGTSSTTCCCHHHHHHHHHHHHTT-SSEEEEC---SSCCSHHH
T ss_pred HhhCCCEEEEec--CCHHHHHHHHHcC-CCEEEeCCCCCCcCCCCcChHHHHHHHHHHcCC-CCEEEEE---CCCCCHHH
Confidence 466789988721 1110000001344 34444433222211 2335677777655432 3676654 78888888
Q ss_pred HHHHHccCCCEEEecCC
Q psy7344 132 AAKLAEPHCDGIDINIG 148 (240)
Q Consensus 132 aa~~le~~~d~Idin~g 148 (240)
+++.+..|+|+|++++.
T Consensus 322 v~kalalGAd~V~iGr~ 338 (392)
T 2nzl_A 322 VLKALALGAKAVFVGRP 338 (392)
T ss_dssp HHHHHHTTCSEEEECHH
T ss_pred HHHHHHhCCCeeEECHH
Confidence 99999899999999874
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=4.5e-05 Score=68.55 Aligned_cols=146 Identities=10% Similarity=-0.021 Sum_probs=90.0
Q ss_pred ccCCCCeecccCC---------CchhhhhccCCCcccCCCchhHHHHHHHhhcccC--CCceeecccc--cccCC----C
Q psy7344 11 TEPHCDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSK--NGPLFMGPLF--IAEPH----C 73 (240)
Q Consensus 11 ~~~~~d~id~N~g---------cP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~--~~p~~vk~~~--~lap~----~ 73 (240)
.+.|+|.|+||++ ||..+.+...||..|.+...++.+++.++. +.. +.|+.++..- +.... .
T Consensus 168 ~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr-~avg~d~pV~vRis~~~~~~~G~~~~~ 246 (363)
T 3l5l_A 168 RDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVR-EVWPENLPLTARFGVLEYDGRDEQTLE 246 (363)
T ss_dssp HHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHH-TTSCTTSCEEEEEEEECSSSCHHHHHH
T ss_pred HHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHH-HHcCCCceEEEEecchhcCCCCCCCHH
Confidence 4568999999998 598777667788889999999999999998 354 3577775321 10000 0
Q ss_pred ccccc-----cCchhhhhhhhcc-cce-e---e--eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccC-C
Q psy7344 74 DGIDI-----NIGCPQMVAKRGH-YGA-Y---L--QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-C 140 (240)
Q Consensus 74 ~~~dl-----~~gC~~~i~~~g~-~ga-~---l--~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~-~ 140 (240)
+.+.+ ..| ...+.++++ +.. . . ..+++++..++..+ ..|++.. +...+..++.++++++ +
T Consensus 247 ~~~~la~~L~~~G-vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~---~iPVi~~---GgI~s~e~a~~~l~~G~a 319 (363)
T 3l5l_A 247 ESIELARRFKAGG-LDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREA---KLPVTSA---WGFGTPQLAEAALQANQL 319 (363)
T ss_dssp HHHHHHHHHHHTT-CCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH---TCCEEEC---SSTTSHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHcC-CCEEEEecCccccccccCCCcchhHHHHHHHHHHc---CCcEEEe---CCCCCHHHHHHHHHCCCc
Confidence 00000 122 122222221 000 0 0 01345555555443 3676643 6666666777888886 9
Q ss_pred CEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 141 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 141 d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
|.|.++++ ++.||+++.++.+.+.
T Consensus 320 D~V~iGR~--------------~lanPdl~~k~~~~lg 343 (363)
T 3l5l_A 320 DLVSVGRA--------------HLADPHWAYFAAKELG 343 (363)
T ss_dssp SEEECCHH--------------HHHCTTHHHHHHHHTT
T ss_pred cEEEecHH--------------HHhCchHHHHHHHHcC
Confidence 99988666 6789999999988754
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00037 Score=58.40 Aligned_cols=109 Identities=10% Similarity=-0.045 Sum_probs=71.3
Q ss_pred hhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc
Q psy7344 101 PLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 101 eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
+.++++...+ ..|+++..+-.++++ +.+.++.|+|+|.++.. ++.+|+.+.++++.+...
T Consensus 64 ~~i~~i~~~~---~ipv~v~ggi~~~~~---~~~~l~~Gad~V~lg~~--------------~l~~p~~~~~~~~~~g~~ 123 (244)
T 2y88_A 64 ELLAEVVGKL---DVQVELSGGIRDDES---LAAALATGCARVNVGTA--------------ALENPQWCARVIGEHGDQ 123 (244)
T ss_dssp HHHHHHHHHC---SSEEEEESSCCSHHH---HHHHHHTTCSEEEECHH--------------HHHCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhc---CCcEEEECCCCCHHH---HHHHHHcCCCEEEECch--------------HhhChHHHHHHHHHcCCC
Confidence 5666665433 468777644455554 44455568898877544 467899999998876543
Q ss_pred cccccCCCCCCCCee-----eEEeee-hh----cHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 181 HFVIAEPHCDGNDIN-----IGCPQM-VA----KRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 181 ~~~i~~~~~~~~~~p-----vsvK~r-~~----~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
+ ++ +.+.+ .++|+| +. ++.++++.+++ |++.|.+|+|++.+.+ .+. ||+
T Consensus 124 ~-~~------~ld~~~~~~~~~v~~~g~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~~--~g~-~~~ 183 (244)
T 2y88_A 124 V-AV------GLDVQIIDGEHRLRGRGWETDGGDLWDVLERLDSEGCSRFVVTDITKDGTL--GGP-NLD 183 (244)
T ss_dssp E-EE------EEEEEEETTEEEEEEGGGTEEEEEHHHHHHHHHHTTCCCEEEEETTTTTTT--SCC-CHH
T ss_pred E-EE------EEeccccCCCCEEEECCccCCCCCHHHHHHHHHhCCCCEEEEEecCCcccc--CCC-CHH
Confidence 1 00 02222 356666 22 57899999999 9999999999998763 343 653
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0017 Score=57.28 Aligned_cols=123 Identities=9% Similarity=-0.036 Sum_probs=75.1
Q ss_pred cccccCCCccccccCchhhhhhhhcccceeee--CChhhHHHhhhcccC-CCCceeEEeecCCHHHHHHHHHHH-ccCCC
Q psy7344 66 LFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQ--DDWPLLTELGFKTRS-HMCGHSLMFCGNDSKNLTEAAKLA-EPHCD 141 (240)
Q Consensus 66 ~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~--~d~eli~~i~~~~~~-~~~pvivqi~g~d~~~~~~aa~~l-e~~~d 141 (240)
+.+.+||.+.++..+. ..++..|+.|.... .+++.+.+....++. .+.|+.+++...++. +.+.++.+ +.++|
T Consensus 28 Pii~apM~gvs~~~la--~av~~aGglG~i~~~~~~~~~l~~~i~~i~~~~~~p~gVnl~~~~~~-~~~~~~~~~~~g~d 104 (326)
T 3bo9_A 28 PILMGGMAWAGTPTLA--AAVSEAGGLGIIGSGAMKPDDLRKAISELRQKTDKPFGVNIILVSPW-ADDLVKVCIEEKVP 104 (326)
T ss_dssp SEEECCCTTTSCHHHH--HHHHHTTSBEEEECTTCCHHHHHHHHHHHHTTCSSCEEEEEETTSTT-HHHHHHHHHHTTCS
T ss_pred CEEECCCCCCCCHHHH--HHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEEeccCCC-HHHHHHHHHHCCCC
Confidence 3567899977766663 45555565454322 245555444433333 246899998775543 23444444 56899
Q ss_pred EEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEE
Q psy7344 142 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLT 220 (240)
Q Consensus 142 ~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~it 220 (240)
.|.++.|||.. . ++.+++ ..+++.+++. +.+.++.+++ |+|+|.
T Consensus 105 ~V~l~~g~p~~----------------~----~~~l~~------------~g~~v~~~v~---s~~~a~~a~~~GaD~i~ 149 (326)
T 3bo9_A 105 VVTFGAGNPTK----------------Y----IRELKE------------NGTKVIPVVA---SDSLARMVERAGADAVI 149 (326)
T ss_dssp EEEEESSCCHH----------------H----HHHHHH------------TTCEEEEEES---SHHHHHHHHHTTCSCEE
T ss_pred EEEECCCCcHH----------------H----HHHHHH------------cCCcEEEEcC---CHHHHHHHHHcCCCEEE
Confidence 99999997632 1 222333 2457777653 3456677778 999999
Q ss_pred Eecccc
Q psy7344 221 ELGKMA 226 (240)
Q Consensus 221 ih~R~~ 226 (240)
++++..
T Consensus 150 v~g~~~ 155 (326)
T 3bo9_A 150 AEGMES 155 (326)
T ss_dssp EECTTS
T ss_pred EECCCC
Confidence 999753
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00062 Score=58.74 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=57.7
Q ss_pred HHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHH
Q psy7344 131 EAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYG 209 (240)
Q Consensus 131 ~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~ 209 (240)
+.|+..|+ |+.+||...+||...-..+ |.+-|.+|+.|++|.++ +++||..|.|+.. ..-+
T Consensus 22 eqa~iae~aGa~av~~l~~~p~d~r~~g--Gv~Rm~dp~~I~~I~~a---------------VsIPVm~k~righ-~~EA 83 (291)
T 3o07_A 22 EQAKIAEKSGACAVMALESIPADMRKSG--KVCRMSDPKMIKDIMNS---------------VSIPVMAKVRIGH-FVEA 83 (291)
T ss_dssp HHHHHHHHHTCSEEEECSSCHHHHHTTT--CCCCCCCHHHHHHHHTT---------------CSSCEEEEEETTC-HHHH
T ss_pred HHHHHHHHhCchhhhhccCCCchhhhcC--CccccCCHHHHHHHHHh---------------CCCCeEEEEecCc-HHHH
Confidence 45666666 8999999999999764433 55568999998888754 7889999999755 4567
Q ss_pred HHHhC-CCCeEEE
Q psy7344 210 AYLQD-DWPLLTE 221 (240)
Q Consensus 210 ~~l~~-G~~~iti 221 (240)
+.|+. |+|.|--
T Consensus 84 qilea~GaD~IDe 96 (291)
T 3o07_A 84 QIIEALEVDYIDE 96 (291)
T ss_dssp HHHHHTTCSEEEE
T ss_pred HHHHHcCCCEEec
Confidence 88999 9999844
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00013 Score=63.02 Aligned_cols=50 Identities=12% Similarity=0.072 Sum_probs=38.5
Q ss_pred cccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeec
Q psy7344 8 RIETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMG 64 (240)
Q Consensus 8 ~~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk 64 (240)
|+.++-|+..|-..-+||...-.. .|.+.|++|+.+.+| . ++.+.|+.-+
T Consensus 25 ~iae~aGa~av~~l~~~p~d~r~~--gGv~Rm~dp~~I~~I----~-~aVsIPVm~k 74 (291)
T 3o07_A 25 KIAEKSGACAVMALESIPADMRKS--GKVCRMSDPKMIKDI----M-NSVSIPVMAK 74 (291)
T ss_dssp HHHHHHTCSEEEECSSCHHHHHTT--TCCCCCCCHHHHHHH----H-TTCSSCEEEE
T ss_pred HHHHHhCchhhhhccCCCchhhhc--CCccccCCHHHHHHH----H-HhCCCCeEEE
Confidence 455666788888899999988744 489999999996654 4 3668998755
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00042 Score=58.21 Aligned_cols=106 Identities=10% Similarity=0.029 Sum_probs=68.8
Q ss_pred CChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHh
Q psy7344 98 DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSP 177 (240)
Q Consensus 98 ~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~ 177 (240)
.++++++++. .. ..|+++. +...+..++.+.++.|+|+|.++.. ++.+|+.+.++ +..
T Consensus 61 ~~~~~i~~i~-~~---~ipvi~~---Ggi~~~~~~~~~~~~Gad~V~lg~~--------------~l~~p~~~~~~-~~~ 118 (241)
T 1qo2_A 61 ENLPVLEKLS-EF---AEHIQIG---GGIRSLDYAEKLRKLGYRRQIVSSK--------------VLEDPSFLKSL-REI 118 (241)
T ss_dssp TTHHHHHHGG-GG---GGGEEEE---SSCCSHHHHHHHHHTTCCEEEECHH--------------HHHCTTHHHHH-HTT
T ss_pred hhHHHHHHHH-hc---CCcEEEE---CCCCCHHHHHHHHHCCCCEEEECch--------------HhhChHHHHHH-HHc
Confidence 3467777765 42 4677655 4444444566666678998876444 56789888888 654
Q ss_pred hhccccccCCCCCCCCeeeEE-----eee-hh-----cHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 178 NMVHFVIAEPHCDGNDINIGC-----PQM-VA-----KRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 178 ~~~~~~i~~~~~~~~~~pvsv-----K~r-~~-----~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
.+. .-+.+++ +++ +. ++.++++.+++ |++.|.+|+|++.+.+ .+. ||+
T Consensus 119 g~~-----------i~~~~d~~~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~t~~~~~g~~--~g~-~~~ 178 (241)
T 1qo2_A 119 DVE-----------PVFSLDTRGGRVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTL--QEH-DFS 178 (241)
T ss_dssp TCE-----------EEEEEEEETTEECCTTCSSCSCCCHHHHHHHHHTTTCCEEEEEETTHHHHT--CCC-CHH
T ss_pred CCc-----------EEEEEEecCCEEEECCceecCCCCHHHHHHHHHhCCCCEEEEEeecccccC--CcC-CHH
Confidence 322 1223334 232 21 67899999999 9999999999987753 343 664
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00088 Score=65.21 Aligned_cols=136 Identities=13% Similarity=0.057 Sum_probs=85.4
Q ss_pred CCccccccCch----hhhhh-----hhcccceeeeCChhhHHHhhhcccC---CCCceeEEeec--------CC-HHHHH
Q psy7344 72 HCDGIDINIGC----PQMVA-----KRGHYGAYLQDDWPLLTELGFKTRS---HMCGHSLMFCG--------ND-SKNLT 130 (240)
Q Consensus 72 ~~~~~dl~~gC----~~~i~-----~~g~~ga~l~~d~eli~~i~~~~~~---~~~pvivqi~g--------~d-~~~~~ 130 (240)
.+|++|++++| -|++. +...||..+.....++.+++.+++. .+.||.+.|.. .+ .++..
T Consensus 162 GfDgVEih~a~gyLl~qFlsp~~N~R~D~yGGs~enR~r~~~eiv~avr~~vg~~~pv~vrls~~~~~~~~G~~~~~~~~ 241 (729)
T 1o94_A 162 GFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQ 241 (729)
T ss_dssp TCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTTTHHH
T ss_pred CCCEEEEccccchHHHHhcCCccCCCcCcCCCCHHHHhHHHHHHHHHHHHHhCCCceEEEEEccccCcCCCCCCchHHHH
Confidence 47888999887 22221 1224555454445666666555443 35789999853 23 45778
Q ss_pred HHHHHHccCCCEEEecCCCchhhhhcccccccc----cCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHH
Q psy7344 131 EAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL----QDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRG 206 (240)
Q Consensus 131 ~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l----~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~ 206 (240)
++++.+++++|.+++..|........ ..... ..+++.+ +.+++. .++||.+-.++.+..
T Consensus 242 ~~~~~l~~~~d~~~v~~g~~~~~~~~--~~~~~~~~~~~~~~~~----~~i~~~-----------~~~pvi~~G~i~~~~ 304 (729)
T 1o94_A 242 KFVEMADSLVDMWDITIGDIAEWGED--AGPSRFYQQGHTIPWV----KLVKQV-----------SKKPVLGVGRYTDPE 304 (729)
T ss_dssp HHHHHHGGGCSEEEEEECCSTTGGGT--SCCTTTCCTTTTHHHH----HHHHTT-----------CSSCEECCSCCCCHH
T ss_pred HHHHHHHhhcCEEEEeeecccccccc--cCCccccCccccHHHH----HHHHHH-----------CCCEEEEeCCCCCHH
Confidence 89999988889999987731110000 00000 1134444 444455 577888888888888
Q ss_pred HHHHHHhC-CCCeEEEeccc
Q psy7344 207 HYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 207 ~~~~~l~~-G~~~itih~R~ 225 (240)
+..+.+++ ++|+|.+ ||-
T Consensus 305 ~a~~~l~~g~aD~V~~-gR~ 323 (729)
T 1o94_A 305 KMIEIVTKGYADIIGC-ARP 323 (729)
T ss_dssp HHHHHHHTTSCSBEEE-SHH
T ss_pred HHHHHHHCCCCCEEEe-Cch
Confidence 88889999 7999999 874
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00096 Score=63.13 Aligned_cols=95 Identities=6% Similarity=-0.167 Sum_probs=62.6
Q ss_pred HHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhh-ccccccCCCCCCCCeeeEEe---------
Q psy7344 130 TEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM-VHFVIAEPHCDGNDINIGCP--------- 199 (240)
Q Consensus 130 ~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~-~~~~i~~~~~~~~~~pvsvK--------- 199 (240)
..+.+.++.|+|.|.||.+|-.. ..+-..++.++.+|+.++++.+..-. .+ + +.+.+|
T Consensus 351 ~~a~~~l~aGad~V~igt~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~g~~~i--v---------v~iD~~~~~~~~~~~ 418 (555)
T 1jvn_A 351 EVASLYFRSGADKVSIGTDAVYA-AEKYYELGNRGDGTSPIETISKAYGAQAV--V---------ISVDPKRVYVNSQAD 418 (555)
T ss_dssp HHHHHHHHHTCSEEEECHHHHHH-HHHHHHTTSCCCSCSHHHHHHHHHCGGGE--E---------EEECEEEEEESSGGG
T ss_pred HHHHHHHHcCCCEEEECCHHhhC-chhhccccccccCHHHHHHHHHHhCCCcE--E---------EEEEccccccccccc
Confidence 34555566799999999998321 11111233357899999999987532 21 0 111121
Q ss_pred ------------------------ee-h-----hcHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 200 ------------------------QM-V-----AKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 200 ------------------------~r-~-----~~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
++ + .++.++++.+++ |++.|.+|+|++.+.+ +|. ||+
T Consensus 419 ~~~~~~~~~~~~~~g~~~~~~~v~~~Gw~~~~~~~~~e~a~~~~~~Ga~~il~t~~~~dG~~--~G~-d~~ 486 (555)
T 1jvn_A 419 TKNKVFETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGSN--SGY-DLE 486 (555)
T ss_dssp CSSCCEECSSCCTTCCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEECCGGGTTTC--SCC-CHH
T ss_pred cccccccccccCCCCCcceeEEEEEecCccCCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCC--CCC-CHH
Confidence 11 2 247899999999 9999999999999874 564 775
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0011 Score=63.80 Aligned_cols=138 Identities=10% Similarity=0.029 Sum_probs=84.5
Q ss_pred CCCccccccCchh----hhhh-----hhcccceeeeCChhhHHHhhhcccC---CCCceeEEee-------cCCHHHHHH
Q psy7344 71 PHCDGIDINIGCP----QMVA-----KRGHYGAYLQDDWPLLTELGFKTRS---HMCGHSLMFC-------GNDSKNLTE 131 (240)
Q Consensus 71 p~~~~~dl~~gC~----~~i~-----~~g~~ga~l~~d~eli~~i~~~~~~---~~~pvivqi~-------g~d~~~~~~ 131 (240)
-.+|.++++++|. |+++ +...||..+.....++.+++.+++. .+.|+.+.|. |.+.+++.+
T Consensus 153 aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~~~g~~~~~~~~ 232 (671)
T 1ps9_A 153 AGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVE 232 (671)
T ss_dssp TTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHH
T ss_pred cCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECccccCCCCCCHHHHHH
Confidence 3468888988873 2221 1223555444445555665554443 3578888876 346778888
Q ss_pred HHHHHcc-CCCEEEecCCCchhhhh-cccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHH
Q psy7344 132 AAKLAEP-HCDGIDINIGCPQMVAK-RGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYG 209 (240)
Q Consensus 132 aa~~le~-~~d~Idin~gCP~~~~~-~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~ 209 (240)
+++.+++ ++|.|++..|....... ...+ ..-...++ .++.+++. .++||.+-.++.+..+..
T Consensus 233 ~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~-~~~~~~~~----~~~~i~~~-----------~~iPvi~~Ggi~~~~~a~ 296 (671)
T 1ps9_A 233 LAQAIEAAGATIINTGIGWHEARIPTIATP-VPRGAFSW----VTRKLKGH-----------VSLPLVTTNRINDPQVAD 296 (671)
T ss_dssp HHHHHHHHTCSEEEEEECBTTCSSCSSSTT-SCTTTTHH----HHHHHTTS-----------CSSCEEECSSCCSHHHHH
T ss_pred HHHHHHhcCCCEEEcCCCcccccccccccc-CCcchHHH----HHHHHHHh-----------cCceEEEeCCCCCHHHHH
Confidence 8999976 89999986542211000 0000 00011223 44555555 678999888887788888
Q ss_pred HHHhC-CCCeEEEeccc
Q psy7344 210 AYLQD-DWPLLTELGKM 225 (240)
Q Consensus 210 ~~l~~-G~~~itih~R~ 225 (240)
+.+++ ++|.|.+ ||-
T Consensus 297 ~~l~~g~aD~V~~-gR~ 312 (671)
T 1ps9_A 297 DILSRGDADMVSM-ARP 312 (671)
T ss_dssp HHHHTTSCSEEEE-STH
T ss_pred HHHHcCCCCEEEe-CHH
Confidence 88888 7999999 875
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0046 Score=55.41 Aligned_cols=126 Identities=11% Similarity=-0.017 Sum_probs=79.0
Q ss_pred ecccccccCCCccccccCchhhhhhhhcccceee-eCChhhHHHhhhcccC-CCCceeEEeecCCHHHHHHHHHHHccCC
Q psy7344 63 MGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYL-QDDWPLLTELGFKTRS-HMCGHSLMFCGNDSKNLTEAAKLAEPHC 140 (240)
Q Consensus 63 vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l-~~d~eli~~i~~~~~~-~~~pvivqi~g~d~~~~~~aa~~le~~~ 140 (240)
++.+.+.+||.++++..+. ..++..|+.+... ..+++-..+.+.+++. ...|+.+++..++ ...+..+++.++
T Consensus 44 l~~Pii~apM~~vt~~~lA--~avA~~GGlgii~~~~s~e~~~~~I~~vk~~~~~pvga~ig~~~---~e~a~~l~eaGa 118 (361)
T 3khj_A 44 LKIPLISSAMDTVTEHLMA--VGMARLGGIGIIHKNMDMESQVNEVLKVKNSGGLRVGAAIGVNE---IERAKLLVEAGV 118 (361)
T ss_dssp ESSSEEECSSTTTCSHHHH--HHHHHTTCEEEECSSSCHHHHHHHHHHHHHTTCCCCEEEECTTC---HHHHHHHHHTTC
T ss_pred cCCCEEeecCCCCCcHHHH--HHHHHcCCCeEEecCCCHHHHHHHHHHHHhccCceEEEEeCCCH---HHHHHHHHHcCc
Confidence 4456678899988877663 4566666555432 1233333333333322 2368888886555 223334446689
Q ss_pred CEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeE
Q psy7344 141 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 141 d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~i 219 (240)
|.|.||.+. .+++.+.+.++.+++. .++||.++.- .+.+.++.+++ |+|+|
T Consensus 119 d~I~ld~a~---------------G~~~~~~~~i~~i~~~-----------~~~~Vivg~v--~t~e~A~~l~~aGaD~I 170 (361)
T 3khj_A 119 DVIVLDSAH---------------GHSLNIIRTLKEIKSK-----------MNIDVIVGNV--VTEEATKELIENGADGI 170 (361)
T ss_dssp SEEEECCSC---------------CSBHHHHHHHHHHHHH-----------CCCEEEEEEE--CSHHHHHHHHHTTCSEE
T ss_pred CeEEEeCCC---------------CCcHHHHHHHHHHHHh-----------cCCcEEEccC--CCHHHHHHHHHcCcCEE
Confidence 999998661 2455566677777776 5678887543 34567888888 99999
Q ss_pred EE
Q psy7344 220 TE 221 (240)
Q Consensus 220 ti 221 (240)
.+
T Consensus 171 ~V 172 (361)
T 3khj_A 171 KV 172 (361)
T ss_dssp EE
T ss_pred EE
Confidence 99
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0002 Score=63.81 Aligned_cols=123 Identities=11% Similarity=0.053 Sum_probs=65.3
Q ss_pred ccCCCCeecccCCCchhhhhccCCCcccCCCchh--HHHHHHHhhcccCCCceeeccc-ccccCC-CccccccCchhhhh
Q psy7344 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPL--LTELVVHFSWVSKNGPLFMGPL-FIAEPH-CDGIDINIGCPQMV 86 (240)
Q Consensus 11 ~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l--~~~iv~ql~~~~~~~p~~vk~~-~~lap~-~~~~dl~~gC~~~i 86 (240)
...++|.|+||++||....... | ++++ +.+++.++. +..+.|+++|-. ....+. +... ...| ...+
T Consensus 137 ~~~gad~i~i~~~~~~~~~~~~--~-----~~~~~~~~~~i~~vr-~~~~~Pv~vK~~~~~~~~~~a~~a-~~~G-ad~I 206 (349)
T 1p0k_A 137 EMIGANALQIHLNVIQEIVMPE--G-----DRSFSGALKRIEQIC-SRVSVPVIVKEVGFGMSKASAGKL-YEAG-AAAV 206 (349)
T ss_dssp HHTTCSEEEEEECTTTTC---------------CTTHHHHHHHHH-HHCSSCEEEEEESSCCCHHHHHHH-HHHT-CSEE
T ss_pred HhcCCCeEEecccchhhhcCCC--C-----CcchHHHHHHHHHHH-HHcCCCEEEEecCCCCCHHHHHHH-HHcC-CCEE
Confidence 3457899999999997644321 2 4443 567788887 356889998731 111110 0000 1233 2233
Q ss_pred hh--hcccc--------e--------e-eeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecC
Q psy7344 87 AK--RGHYG--------A--------Y-LQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINI 147 (240)
Q Consensus 87 ~~--~g~~g--------a--------~-l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~ 147 (240)
.+ ||++. . + -...++.+.++...+ .+.|+++. +++.+..++.+++..|+|+|.++.
T Consensus 207 ~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~--~~ipvia~---GGI~~~~d~~k~l~~GAd~V~iG~ 281 (349)
T 1p0k_A 207 DIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEF--PASTMIAS---GGLQDALDVAKAIALGASCTGMAG 281 (349)
T ss_dssp EEEC---------------CCGGGGTTCSCCHHHHHHHHHHHC--TTSEEEEE---SSCCSHHHHHHHHHTTCSEEEECH
T ss_pred EEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhc--CCCeEEEE---CCCCCHHHHHHHHHcCCCEEEEcH
Confidence 22 44321 0 0 012245566554433 24676655 777777788888888999999977
Q ss_pred C
Q psy7344 148 G 148 (240)
Q Consensus 148 g 148 (240)
.
T Consensus 282 ~ 282 (349)
T 1p0k_A 282 H 282 (349)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0011 Score=56.74 Aligned_cols=105 Identities=8% Similarity=-0.100 Sum_probs=65.6
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCC-----HHHHHHH
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD-----WPLLTNL 173 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~-----p~~i~~i 173 (240)
+.+.++++..++ ++-+|++|+-. +. ++.+.+ .|++.|-+ |++++.| |+.++++
T Consensus 64 n~~~i~~i~~~~-----~~pv~vgGGir-~~-~~~~~l-~Ga~~Vii--------------gs~a~~~~g~~~p~~~~~~ 121 (260)
T 2agk_A 64 NDDAAREALQES-----PQFLQVGGGIN-DT-NCLEWL-KWASKVIV--------------TSWLFTKEGHFQLKRLERL 121 (260)
T ss_dssp CHHHHHHHHHHS-----TTTSEEESSCC-TT-THHHHT-TTCSCEEE--------------CGGGBCTTCCBCHHHHHHH
T ss_pred CHHHHHHHHhcC-----CceEEEeCCCC-HH-HHHHHh-cCCCEEEE--------------CcHHHhhcCCCCHHHHHHH
Confidence 466777775442 34456766654 33 777888 87776654 4557788 9999999
Q ss_pred HHHhh-hccccccCCCCCCCCeeeEEe----------ee-hh-----cHH-HHHHHHhCCCCeEEEecccccccCCCCCC
Q psy7344 174 VYSPN-MVHFVIAEPHCDGNDINIGCP----------QM-VA-----KRG-HYGAYLQDDWPLLTELGKMAMLVGILDNT 235 (240)
Q Consensus 174 v~~~~-~~~~~i~~~~~~~~~~pvsvK----------~r-~~-----~~~-~~~~~l~~G~~~itih~R~~~~~~~~~~~ 235 (240)
++.+. +. .-+++.+| ++ +. +.. ++++.+++=++.|++|+|++.+.+ +|+
T Consensus 122 ~~~~g~~~-----------ivv~iD~k~~~~~g~~V~~~gw~~~t~~~~~~e~a~~~~~~a~~il~t~i~~dG~~--~G~ 188 (260)
T 2agk_A 122 TELCGKDR-----------IVVDLSCRKTQDGRWIVAMNKWQTLTDLELNADTFRELRKYTNEFLIHAADVEGLC--GGI 188 (260)
T ss_dssp HHHHCGGG-----------EEEEEEEEEEETTEEEEEETTTTEEEEEEESHHHHHHHTTTCSEEEEEC---------CCC
T ss_pred HHHhCcCc-----------EEEEEEeeecCCCceEEEEcCCccccCccHHHHHHHHHHHhcCEEEEEeeccccCc--CCC
Confidence 99886 33 23355555 22 21 335 888888666999999999999884 576
Q ss_pred CCCC
Q psy7344 236 GSWT 239 (240)
Q Consensus 236 adw~ 239 (240)
||+
T Consensus 189 -d~e 191 (260)
T 2agk_A 189 -DEL 191 (260)
T ss_dssp -CHH
T ss_pred -CHH
Confidence 875
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0023 Score=56.55 Aligned_cols=92 Identities=11% Similarity=0.011 Sum_probs=56.9
Q ss_pred CCceeEEe-----ecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCC
Q psy7344 114 MCGHSLMF-----CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPH 188 (240)
Q Consensus 114 ~~pvivqi-----~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~ 188 (240)
+.|++.++ .+.+++.+.++++++. ++++.++..+.+.... . |. .++..+.++++++++
T Consensus 117 d~pv~~~~~~~q~~~~~~~~~~~a~~~~~--~~a~~i~~n~~~~~~~-~--~~---~~~~~~~~~i~~vr~--------- 179 (332)
T 1vcf_A 117 KALLIANLGLAQLRRYGRDDLLRLVEMLE--ADALAFHVNPLQEAVQ-R--GD---TDFRGLVERLAELLP--------- 179 (332)
T ss_dssp SSCEEEEEEGGGGGTCCHHHHHHHHHHHT--CSEEEEECCHHHHHHT-T--SC---CCCTTHHHHHHHHCS---------
T ss_pred CceeecccChhhhhccChHHHHHHHhhcC--CCceeeccchHHHHhc-C--CC---ccHHHHHHHHHHHHc---------
Confidence 57887554 3456777777777653 5665555443333222 1 11 232224456666655
Q ss_pred CCCCCeeeEEe-eehhcHHHHHHHHhC-CCCeEEE--eccc
Q psy7344 189 CDGNDINIGCP-QMVAKRGHYGAYLQD-DWPLLTE--LGKM 225 (240)
Q Consensus 189 ~~~~~~pvsvK-~r~~~~~~~~~~l~~-G~~~iti--h~R~ 225 (240)
.++||++| +....+.+.++.+++ |+|+|++ |++|
T Consensus 180 ---~~~Pv~vK~v~~g~~~e~a~~~~~~G~d~I~vs~~ggt 217 (332)
T 1vcf_A 180 ---LPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGT 217 (332)
T ss_dssp ---CSSCEEEECSSSCCCHHHHHHHTTSCCSEEECCCBTSC
T ss_pred ---CCCCEEEEecCCCCCHHHHHHHHHcCCCEEEeCCCCCC
Confidence 25699999 444345567889999 9999999 8876
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0087 Score=52.53 Aligned_cols=123 Identities=7% Similarity=-0.128 Sum_probs=71.7
Q ss_pred ccccCCCccccccCchhhhhhhhcccceeee---CChhhHHHhhhcccC-CCCceeEEeecCC---HHHHHHHHHHH-cc
Q psy7344 67 FIAEPHCDGIDINIGCPQMVAKRGHYGAYLQ---DDWPLLTELGFKTRS-HMCGHSLMFCGND---SKNLTEAAKLA-EP 138 (240)
Q Consensus 67 ~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~---~d~eli~~i~~~~~~-~~~pvivqi~g~d---~~~~~~aa~~l-e~ 138 (240)
.+.+||.+.++..+. ..++..|+.|.... .+++.+.+...+++. .+.|+.+++..+. ..++.+.++.+ +.
T Consensus 18 ii~apM~gvs~~~la--~av~~aGglG~i~~~~~~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~~~~~~~~~~ 95 (328)
T 2gjl_A 18 IMQGGMQWVGRAEMA--AAVANAGGLATLSALTQPSPEALAAEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRAAIIEA 95 (328)
T ss_dssp EEECCCTTTCSHHHH--HHHHHTTSBCEEETTTSSSHHHHHHHHHHHHHHCSSCCEEEEEECCCSSCCCHHHHHHHHHHT
T ss_pred EEECCCCCCCcHHHH--HHHHHCCCeEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeccccccCccHHHHHHHHHhc
Confidence 466899876665553 45565565454322 124444433332222 2468888887751 22344555555 45
Q ss_pred CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCC
Q psy7344 139 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWP 217 (240)
Q Consensus 139 ~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~ 217 (240)
++|+|.++.||| ++. ++.+++ ..+|+..+.. +.+.++.+++ |+|
T Consensus 96 g~d~V~~~~g~p----------------~~~----~~~l~~------------~gi~vi~~v~---t~~~a~~~~~~GaD 140 (328)
T 2gjl_A 96 GIRVVETAGNDP----------------GEH----IAEFRR------------HGVKVIHKCT---AVRHALKAERLGVD 140 (328)
T ss_dssp TCCEEEEEESCC----------------HHH----HHHHHH------------TTCEEEEEES---SHHHHHHHHHTTCS
T ss_pred CCCEEEEcCCCc----------------HHH----HHHHHH------------cCCCEEeeCC---CHHHHHHHHHcCCC
Confidence 899999998865 222 333333 2456766542 3345667777 999
Q ss_pred eEEEecccc
Q psy7344 218 LLTELGKMA 226 (240)
Q Consensus 218 ~itih~R~~ 226 (240)
+|.+++++.
T Consensus 141 ~i~v~g~~~ 149 (328)
T 2gjl_A 141 AVSIDGFEC 149 (328)
T ss_dssp EEEEECTTC
T ss_pred EEEEECCCC
Confidence 999999865
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0029 Score=52.97 Aligned_cols=99 Identities=7% Similarity=-0.068 Sum_probs=61.0
Q ss_pred hhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc
Q psy7344 101 PLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 101 eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
+.++++...+ ..|+++..+-.++++ +.+.++.|+|+|-++.. ++.+|+.+.++++.....
T Consensus 65 ~~i~~i~~~~---~ipv~v~ggI~~~~~---~~~~l~~Gad~V~lg~~--------------~l~~p~~~~~~~~~~g~~ 124 (244)
T 1vzw_A 65 ALIAEVAQAM---DIKVELSGGIRDDDT---LAAALATGCTRVNLGTA--------------ALETPEWVAKVIAEHGDK 124 (244)
T ss_dssp HHHHHHHHHC---SSEEEEESSCCSHHH---HHHHHHTTCSEEEECHH--------------HHHCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhc---CCcEEEECCcCCHHH---HHHHHHcCCCEEEECch--------------HhhCHHHHHHHHHHcCCc
Confidence 5566665432 468777644456554 44455568888876443 467899998888875433
Q ss_pred cccccCCCCCCCCeeeEEe-----ee-hh----cHHHHHHHHhC-CCCeEEEecccccccC
Q psy7344 181 HFVIAEPHCDGNDINIGCP-----QM-VA----KRGHYGAYLQD-DWPLLTELGKMAMLVG 230 (240)
Q Consensus 181 ~~~i~~~~~~~~~~pvsvK-----~r-~~----~~~~~~~~l~~-G~~~itih~R~~~~~~ 230 (240)
..+.++++ .. +. +..++++.+++ |++.|.+|++++.+.+
T Consensus 125 -----------~~~~l~~~~g~v~~~g~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~~ 174 (244)
T 1vzw_A 125 -----------IAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEGCARYVVTDIAKDGTL 174 (244)
T ss_dssp -----------EEEEEEEETTEECCSSSCCCCCBHHHHHHHHHHTTCCCEEEEEC------
T ss_pred -----------EEEEEEccCCEEEEcCcccCCCCHHHHHHHHHhCCCCEEEEeccCccccc
Confidence 12334443 11 21 67889999999 9999999999987653
|
| >3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00042 Score=63.16 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=41.6
Q ss_pred cccCCCCeecccCCC---------chhhhhccCCCcccCCCchhHHHHHHHhhcccC-CCceeec
Q psy7344 10 ETEPHCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSK-NGPLFMG 64 (240)
Q Consensus 10 ~~~~~~d~id~N~gc---------P~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~-~~p~~vk 64 (240)
..+.|+|.|+||+|| |.-+-+...||..+.+...++.+++.++. +.. ..|+.++
T Consensus 177 a~~aGfdgveih~~~GYLl~QFLsp~~N~r~D~YGGs~enr~r~~~ei~~av~-~~~~~~~v~~r 240 (407)
T 3tjl_A 177 AMDAGFDYIELHAAHGYLLDQFLQPCTNQRTDEYGGSIENRARLILELIDHLS-TIVGADKIGIR 240 (407)
T ss_dssp HHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHH-HHHCGGGEEEE
T ss_pred HHHhCCCeEEECCccchHHHHhcCccccccCCcCCCChhhChHHHHHHHHHHH-HHhCCCeEEEE
Confidence 445789999999999 96555445678779999999999999988 343 3466664
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0037 Score=52.42 Aligned_cols=107 Identities=7% Similarity=-0.084 Sum_probs=67.0
Q ss_pred hhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhh
Q psy7344 100 WPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM 179 (240)
Q Consensus 100 ~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~ 179 (240)
.++++++...+ +.|+++.=+-++++ ++.+.++.|+|+|-++.. ++.+|+.+.++.+....
T Consensus 64 ~~~i~~i~~~~---~iPvi~~Ggi~~~~---~~~~~~~~Gad~V~lg~~--------------~l~~p~~~~~~~~~~~~ 123 (252)
T 1ka9_F 64 LDVVARVAERV---FIPLTVGGGVRSLE---DARKLLLSGADKVSVNSA--------------AVRRPELIRELADHFGA 123 (252)
T ss_dssp HHHHHHHHTTC---CSCEEEESSCCSHH---HHHHHHHHTCSEEEECHH--------------HHHCTHHHHHHHHHHCG
T ss_pred HHHHHHHHHhC---CCCEEEECCcCCHH---HHHHHHHcCCCEEEEChH--------------HHhCcHHHHHHHHHcCC
Confidence 45666665432 47887752223444 444445558999987544 45788888888877542
Q ss_pred ccccccCCCCCCCCeeeEEe---------ee-h-----hcHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 180 VHFVIAEPHCDGNDINIGCP---------QM-V-----AKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 180 ~~~~i~~~~~~~~~~pvsvK---------~r-~-----~~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
.. ..+.+++| +. + .++.+.++.+++ |++.|.+|.+++.+.+ .+. ||+
T Consensus 124 ~~----------i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~~--~g~-~~~ 186 (252)
T 1ka9_F 124 QA----------VVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTK--EGY-DLR 186 (252)
T ss_dssp GG----------EEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTTC--SCC-CHH
T ss_pred Cc----------EEEEEEEecCCCCEEEEECCCccccCCcHHHHHHHHHHcCCCEEEEecccCCCCc--CCC-CHH
Confidence 10 12234443 22 2 256899999999 9999999988877653 343 554
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0041 Score=52.18 Aligned_cols=107 Identities=9% Similarity=-0.060 Sum_probs=67.6
Q ss_pred hhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhh
Q psy7344 100 WPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM 179 (240)
Q Consensus 100 ~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~ 179 (240)
++.++++...+ ..|+++.-+-.++++ +.+.++.|+|+|.++.. ++.+|+.+.++.+....
T Consensus 63 ~~~i~~i~~~~---~ipvi~~ggI~~~~~---~~~~~~~Gad~V~lg~~--------------~l~~p~~~~~~~~~~g~ 122 (253)
T 1thf_D 63 LELVEKVAEQI---DIPFTVGGGIHDFET---ASELILRGADKVSINTA--------------AVENPSLITQIAQTFGS 122 (253)
T ss_dssp HHHHHHHHTTC---CSCEEEESSCCSHHH---HHHHHHTTCSEEEESHH--------------HHHCTHHHHHHHHHHCG
T ss_pred HHHHHHHHHhC---CCCEEEeCCCCCHHH---HHHHHHcCCCEEEEChH--------------HHhChHHHHHHHHHcCC
Confidence 56666665432 468777633345544 44555568999977444 45788888888887542
Q ss_pred ccccccCCCCCCCCeeeEEe---------ee-h-----hcHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 180 VHFVIAEPHCDGNDINIGCP---------QM-V-----AKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 180 ~~~~i~~~~~~~~~~pvsvK---------~r-~-----~~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
.. ..+.+++| ++ + .+..++++.+++ |++.|.+|.+++...+ .+. ||+
T Consensus 123 ~~----------i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~~--~g~-~~~ 185 (253)
T 1thf_D 123 QA----------VVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTK--SGY-DTE 185 (253)
T ss_dssp GG----------EEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSC--SCC-CHH
T ss_pred Cc----------EEEEEEEEccCCcEEEEECCCccccCCCHHHHHHHHHHCCCCEEEEEeccCCCCC--CCC-CHH
Confidence 10 11234443 33 2 157889999999 9999999999887653 343 553
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00032 Score=65.84 Aligned_cols=131 Identities=11% Similarity=0.001 Sum_probs=77.7
Q ss_pred ccCCCCeecccCCCch----hhhhccC-------------------CC-cccC---CCchhHHHHHHHhhcccCCCceee
Q psy7344 11 TEPHCDGIDINIGCPQ----MVAKRGH-------------------YG-AYLQ---DDWPLLTELVVHFSWVSKNGPLFM 63 (240)
Q Consensus 11 ~~~~~d~id~N~gcP~----~kv~k~~-------------------~G-~~l~---~~~~l~~~iv~ql~~~~~~~p~~v 63 (240)
.+.+++.|.|++.||+ .+..|++ .| +.+| .+|.+..+.+.++. +..+.|+.+
T Consensus 270 e~aG~~al~itvd~p~~g~R~~~~r~g~~~p~~~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~i~~lr-~~~~~Pviv 348 (511)
T 1kbi_A 270 EKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIEELK-KKTKLPIVI 348 (511)
T ss_dssp HHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTTBCTTCCHHHHHHHH-HHCSSCEEE
T ss_pred HHcCCCEEEEeCCCCCccccHHHHhccCCCCcccccccccccccccccHHHHHhhccChHhHHHHHHHHH-HHhCCcEEE
Confidence 3457898888888998 3333221 11 2334 57888888888998 456899998
Q ss_pred cccccccCCCccccccCchhhhhhh--hcccceee-eCChhhHHHhhhcccC----CCCceeEEeecCCHHHHHHHHHHH
Q psy7344 64 GPLFIAEPHCDGIDINIGCPQMVAK--RGHYGAYL-QDDWPLLTELGFKTRS----HMCGHSLMFCGNDSKNLTEAAKLA 136 (240)
Q Consensus 64 k~~~~lap~~~~~dl~~gC~~~i~~--~g~~ga~l-~~d~eli~~i~~~~~~----~~~pvivqi~g~d~~~~~~aa~~l 136 (240)
|-. ..+.....-...| +..|.+ ||++..+. ...++++.++...+.. ...||++. +++.+..++++++
T Consensus 349 Kgv--~~~e~A~~a~~aG-ad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~---GGI~~g~Dv~kaL 422 (511)
T 1kbi_A 349 KGV--QRTEDVIKAAEIG-VSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVD---GGVRRGTDVLKAL 422 (511)
T ss_dssp EEE--CSHHHHHHHHHTT-CSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEE---SSCCSHHHHHHHH
T ss_pred EeC--CCHHHHHHHHHcC-CCEEEEcCCCCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEEE---CCCCCHHHHHHHH
Confidence 721 1110000001344 344444 44321111 2235667666655421 23676655 8888888899999
Q ss_pred ccCCCEEEecCC
Q psy7344 137 EPHCDGIDINIG 148 (240)
Q Consensus 137 e~~~d~Idin~g 148 (240)
..|+|+|+|++.
T Consensus 423 alGAdaV~iGr~ 434 (511)
T 1kbi_A 423 CLGAKGVGLGRP 434 (511)
T ss_dssp HHTCSEEEECHH
T ss_pred HcCCCEEEECHH
Confidence 889999999873
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0035 Score=56.50 Aligned_cols=109 Identities=4% Similarity=-0.232 Sum_probs=67.2
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-CCCEEE--------------ecCCCchhh---hh--------c--ccccccc--
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-HCDGID--------------INIGCPQMV---AK--------R--GHYGAYL-- 163 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~~d~Id--------------in~gCP~~~---~~--------~--~g~G~~l-- 163 (240)
+.|...|+.....+...+..+.+++ |+.++. +|.||+.+. .. . ...++++
T Consensus 123 ~~~~~fQly~~~~~~~~~~i~~a~~aG~~al~vTvd~p~~g~r~~d~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ala~ 202 (380)
T 1p4c_A 123 DGDLWFQLYVIHREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAA 202 (380)
T ss_dssp CSCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHH
T ss_pred CCCeEEEEEechHHHHHHHHHHHHHcCCCEEEEeecCccccchhHHHhcCCCCccccCHHHhhhhhhhccCcccchHHHH
Confidence 4678889864335555566666654 676664 366884321 00 0 0111211
Q ss_pred -cC---CHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEE--ecccccccCCCCCCC
Q psy7344 164 -QD---DWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTE--LGKMAMLVGILDNTG 236 (240)
Q Consensus 164 -~~---~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~iti--h~R~~~~~~~~~~~a 236 (240)
+. +|+...++++++++. +++||++|.- .+.+.++.+++ |+|+|++ ||++ |.+ .+.+
T Consensus 203 ~~~~~~~p~~~~~~i~~i~~~-----------~~~Pv~vkgv--~t~e~a~~a~~aGad~I~vs~~gg~--~~d--~~~~ 265 (380)
T 1p4c_A 203 LMSRQMDASFNWEALRWLRDL-----------WPHKLLVKGL--LSAEDADRCIAEGADGVILSNHGGR--QLD--CAIS 265 (380)
T ss_dssp HTSSCCCTTCCHHHHHHHHHH-----------CCSEEEEEEE--CCHHHHHHHHHTTCSEEEECCGGGT--SCT--TCCC
T ss_pred HHHhhcCccccHHHHHHHHHh-----------cCCCEEEEec--CcHHHHHHHHHcCCCEEEEcCCCCC--cCC--CCcC
Confidence 12 565556777777777 7889999963 45677888888 9999999 7765 332 3556
Q ss_pred CCC
Q psy7344 237 SWT 239 (240)
Q Consensus 237 dw~ 239 (240)
+|+
T Consensus 266 ~~~ 268 (380)
T 1p4c_A 266 PME 268 (380)
T ss_dssp GGG
T ss_pred HHH
Confidence 664
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.015 Score=52.55 Aligned_cols=76 Identities=11% Similarity=0.055 Sum_probs=52.4
Q ss_pred eeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC-Cee
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN-DIN 195 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~-~~p 195 (240)
+.+++.. +.+....+...++.++|.|++|.++ .+|+.+.++++++++. . ++|
T Consensus 144 ~~~~i~~-~~~~~~~a~~~~~~G~d~i~i~~~~---------------g~~~~~~e~i~~ir~~-----------~~~~p 196 (404)
T 1eep_A 144 VGAAVSI-DIDTIERVEELVKAHVDILVIDSAH---------------GHSTRIIELIKKIKTK-----------YPNLD 196 (404)
T ss_dssp CEEEECS-CTTHHHHHHHHHHTTCSEEEECCSC---------------CSSHHHHHHHHHHHHH-----------CTTCE
T ss_pred EEEEeCC-ChhHHHHHHHHHHCCCCEEEEeCCC---------------CChHHHHHHHHHHHHH-----------CCCCe
Confidence 4556543 3333444444556689999998763 1456777788888877 4 678
Q ss_pred eEEeeehhcHHHHHHHHhC-CCCeEEE
Q psy7344 196 IGCPQMVAKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 196 vsvK~r~~~~~~~~~~l~~-G~~~iti 221 (240)
|.++.- .+.+.++.+++ |+|+|.+
T Consensus 197 viv~~v--~~~~~a~~a~~~Gad~I~v 221 (404)
T 1eep_A 197 LIAGNI--VTKEAALDLISVGADCLKV 221 (404)
T ss_dssp EEEEEE--CSHHHHHHHHTTTCSEEEE
T ss_pred EEEcCC--CcHHHHHHHHhcCCCEEEE
Confidence 887533 23578888999 9999999
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.00083 Score=60.39 Aligned_cols=132 Identities=14% Similarity=0.094 Sum_probs=74.7
Q ss_pred ccccCCCCeecccCCCchh---------------hh-----hc-------cCCCccc------CCCchhHHHHHHHhhcc
Q psy7344 9 IETEPHCDGIDINIGCPQM---------------VA-----KR-------GHYGAYL------QDDWPLLTELVVHFSWV 55 (240)
Q Consensus 9 ~~~~~~~d~id~N~gcP~~---------------kv-----~k-------~~~G~~l------~~~~~l~~~iv~ql~~~ 55 (240)
...+.+++.|+||++||+. ++ .+ ...|+.+ +.+|++..+.+.++. +
T Consensus 144 ~a~~~G~~ai~it~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~i~~l~-~ 222 (370)
T 1gox_A 144 RAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQ-T 222 (370)
T ss_dssp HHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCHHHHHHHH-H
T ss_pred HHHHCCCCEEEEeCCCCcccccHHHHHhccCCCcccchhhhhhhhhhccccccCccHHHHHHhhcCccchHHHHHHHH-H
Confidence 3455679999999999986 21 11 2334444 557776667788888 4
Q ss_pred cCCCceeecccccccCCCccccccCchhhhhhh--hcccce-eeeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHH
Q psy7344 56 SKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAK--RGHYGA-YLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEA 132 (240)
Q Consensus 56 ~~~~p~~vk~~~~lap~~~~~dl~~gC~~~i~~--~g~~ga-~l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~a 132 (240)
..+.|+.+|-. ..+..-..-...| +..+.+ ||+... ....+++.+.++...+.+ ..|++.. +++.+..++
T Consensus 223 ~~~~pv~vK~~--~~~e~a~~a~~~G-ad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~-~ipvia~---GGI~~~~D~ 295 (370)
T 1gox_A 223 ITSLPILVKGV--ITAEDARLAVQHG-AAGIIVSNHGARQLDYVPATIMALEEVVKAAQG-RIPVFLD---GGVRRGTDV 295 (370)
T ss_dssp HCCSCEEEECC--CSHHHHHHHHHTT-CSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTT-SSCEEEE---SSCCSHHHH
T ss_pred HhCCCEEEEec--CCHHHHHHHHHcC-CCEEEECCCCCccCCCcccHHHHHHHHHHHhCC-CCEEEEE---CCCCCHHHH
Confidence 56789887632 1110000001333 223322 332110 012345667776655432 4677665 777777788
Q ss_pred HHHHccCCCEEEecCC
Q psy7344 133 AKLAEPHCDGIDINIG 148 (240)
Q Consensus 133 a~~le~~~d~Idin~g 148 (240)
.+.+..|+|+|.++..
T Consensus 296 ~k~l~~GAdaV~iGr~ 311 (370)
T 1gox_A 296 FKALALGAAGVFIGRP 311 (370)
T ss_dssp HHHHHHTCSEEEECHH
T ss_pred HHHHHcCCCEEeecHH
Confidence 8888889999999874
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.015 Score=48.45 Aligned_cols=82 Identities=7% Similarity=-0.017 Sum_probs=57.3
Q ss_pred ceeEEe---ec-CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCC
Q psy7344 116 GHSLMF---CG-NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCD 190 (240)
Q Consensus 116 pvivqi---~g-~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~ 190 (240)
|+++++ .+ -+.++..++++.+++ |+|+|..|.|- ..| ..+++.++.+.+.+..
T Consensus 117 pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I~tstg~--------~~g---ga~~~~i~~v~~~v~~----------- 174 (225)
T 1mzh_A 117 SAVHKVIVETPYLNEEEIKKAVEICIEAGADFIKTSTGF--------APR---GTTLEEVRLIKSSAKG----------- 174 (225)
T ss_dssp TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSC--------SSS---CCCHHHHHHHHHHHTT-----------
T ss_pred CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEECCCC--------CCC---CCCHHHHHHHHHHhCC-----------
Confidence 888888 33 467778889998866 89999888761 012 1588888888876532
Q ss_pred CCCeeeEEeeehhcHHHHHHHHhCCCCeEEE
Q psy7344 191 GNDINIGCPQMVAKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 191 ~~~~pvsvK~r~~~~~~~~~~l~~G~~~iti 221 (240)
++||.+-..+.+..+..++++.|++.|-+
T Consensus 175 --~ipVia~GGI~t~~da~~~l~aGA~~iG~ 203 (225)
T 1mzh_A 175 --RIKVKASGGIRDLETAISMIEAGADRIGT 203 (225)
T ss_dssp --SSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred --CCcEEEECCCCCHHHHHHHHHhCchHHHH
Confidence 45666665566777777777669996543
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.015 Score=48.67 Aligned_cols=95 Identities=7% Similarity=-0.115 Sum_probs=66.3
Q ss_pred CceeEEeecCCH--HHHHHHHHHHccCCCEEEec--CCCchhhhhcccccc-----c--ccCCHHHHHHHHHHhhhcccc
Q psy7344 115 CGHSLMFCGNDS--KNLTEAAKLAEPHCDGIDIN--IGCPQMVAKRGHYGA-----Y--LQDDWPLLTNLVYSPNMVHFV 183 (240)
Q Consensus 115 ~pvivqi~g~d~--~~~~~aa~~le~~~d~Idin--~gCP~~~~~~~g~G~-----~--l~~~p~~i~~iv~~~~~~~~~ 183 (240)
..++..|..+|+ +.+.+.++.+++++|.|+++ .+||..- +..-. + -..+.+...++++.+++.
T Consensus 5 ~~~~~~i~~~~~~~~~~~~~a~~~~~~ad~iel~~p~sdp~~D---G~~~~~~~~~al~~g~~~~~~~~~i~~i~~~--- 78 (248)
T 1geq_A 5 GSLIPYLTAGDPDKQSTLNFLLALDEYAGAIELGIPFSDPIAD---GKTIQESHYRALKNGFKLREAFWIVKEFRRH--- 78 (248)
T ss_dssp TEEEEEEETTSSCHHHHHHHHHHHGGGBSCEEEECCCSCCTTS---CHHHHHHHHHHHHTTCCHHHHHHHHHHHHTT---
T ss_pred ccEEEEEeCCCCCHHHHHHHHHHHHHcCCEEEECCCCCCCCCC---CHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh---
Confidence 357888888877 58888888886559999998 6676541 10000 0 013666667788888776
Q ss_pred ccCCCCCCCCeeeEEeeehh-----cHHHHHHHHhC-CCCeEEEec
Q psy7344 184 IAEPHCDGNDINIGCPQMVA-----KRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 184 i~~~~~~~~~~pvsvK~r~~-----~~~~~~~~l~~-G~~~itih~ 223 (240)
+++||.+-..++ .+.++++.+.+ |+|.|++|.
T Consensus 79 --------~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~ 116 (248)
T 1geq_A 79 --------SSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVD 116 (248)
T ss_dssp --------CCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETT
T ss_pred --------CCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECC
Confidence 567888766432 23688999999 999999985
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.001 Score=62.96 Aligned_cols=147 Identities=7% Similarity=-0.070 Sum_probs=85.3
Q ss_pred ccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccc---------------------
Q psy7344 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLF--------------------- 67 (240)
Q Consensus 9 ~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~--------------------- 67 (240)
.+.+.|+|.|.||++| ++++.+...++.++.+|+++.++....- ....-+.+.++.
T Consensus 355 ~~l~aGad~V~igt~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~g--~~~ivv~iD~~~~~~~~~~~~~~~~~~~~~~~~ 431 (555)
T 1jvn_A 355 LYFRSGADKVSIGTDA-VYAAEKYYELGNRGDGTSPIETISKAYG--AQAVVISVDPKRVYVNSQADTKNKVFETEYPGP 431 (555)
T ss_dssp HHHHHTCSEEEECHHH-HHHHHHHHHTTSCCCSCSHHHHHHHHHC--GGGEEEEECEEEEEESSGGGCSSCCEECSSCCT
T ss_pred HHHHcCCCEEEECCHH-hhCchhhccccccccCHHHHHHHHHHhC--CCcEEEEEEccccccccccccccccccccccCC
Confidence 3456789999999999 6665555556668999999998877542 111222222110
Q ss_pred ----------cccCCCccccc----------cCchhhhhhhhccc--ceeeeCChhhHHHhhhcccCCCCceeEEeecCC
Q psy7344 68 ----------IAEPHCDGIDI----------NIGCPQMVAKRGHY--GAYLQDDWPLLTELGFKTRSHMCGHSLMFCGND 125 (240)
Q Consensus 68 ----------~lap~~~~~dl----------~~gC~~~i~~~g~~--ga~l~~d~eli~~i~~~~~~~~~pvivqi~g~d 125 (240)
...++...+++ ..|| ..+..|+.+ |.+.-.|+++++++...+ ..|+|.+ ++
T Consensus 432 ~g~~~~~~~v~~~Gw~~~~~~~~~e~a~~~~~~Ga-~~il~t~~~~dG~~~G~d~~li~~l~~~~---~iPVIas---GG 504 (555)
T 1jvn_A 432 NGEKYCWYQCTIKGGRESRDLGVWELTRACEALGA-GEILLNCIDKDGSNSGYDLELIEHVKDAV---KIPVIAS---SG 504 (555)
T ss_dssp TCCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTC-CEEEECCGGGTTTCSCCCHHHHHHHHHHC---SSCEEEC---SC
T ss_pred CCCcceeEEEEEecCccCCCCCHHHHHHHHHHcCC-CEEEEeCCCCCCCCCCCCHHHHHHHHHhC---CccEEEE---CC
Confidence 11122211111 3332 223333322 222234789999987654 4788776 66
Q ss_pred HHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhh
Q psy7344 126 SKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM 179 (240)
Q Consensus 126 ~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~ 179 (240)
+.+..++.++++ .+++++.++.+ +...+..+.++++.+++
T Consensus 505 i~s~~d~~~~~~~~G~~gvivg~a--------------~~~~~~~~~e~~~~l~~ 545 (555)
T 1jvn_A 505 AGVPEHFEEAFLKTRADACLGAGM--------------FHRGEFTVNDVKEYLLE 545 (555)
T ss_dssp CCSHHHHHHHHHHSCCSEEEESHH--------------HHTTSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCChHHHHHHH--------------HHcCCCCHHHHHHHHHH
Confidence 666667777776 58999998665 23344455566666555
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.026 Score=50.36 Aligned_cols=126 Identities=7% Similarity=-0.009 Sum_probs=73.0
Q ss_pred cccccccCCCc-cccccCchhhhhhhhcccceeee--CChhhHHHhhhcccC-CCCceeEEeecCCHH------------
Q psy7344 64 GPLFIAEPHCD-GIDINIGCPQMVAKRGHYGAYLQ--DDWPLLTELGFKTRS-HMCGHSLMFCGNDSK------------ 127 (240)
Q Consensus 64 k~~~~lap~~~-~~dl~~gC~~~i~~~g~~ga~l~--~d~eli~~i~~~~~~-~~~pvivqi~g~d~~------------ 127 (240)
+...+.+||.+ .++..+. ..++..|+.|.... .+++.+.+...+++. .+.|+.+++....+.
T Consensus 10 ~~Pii~apMaggvs~~~la--~av~~aGglG~i~~~~~s~~~l~~~i~~~~~~~~~p~gVnl~~~~~~~~~~~~~~~~~~ 87 (369)
T 3bw2_A 10 PLPIVQAPMAGGVSVPQLA--AAVCEAGGLGFLAAGYKTADGMYQEIKRLRGLTGRPFGVNVFMPQPELAESGAVEVYAH 87 (369)
T ss_dssp SSSEEECCCTTTTSCHHHH--HHHHHTTSBEEEECTTSCHHHHHHHHHHHHHHCCSCEEEEEECCCCCC---CHHHHHHH
T ss_pred cCCEEeCCCCCCCCcHHHH--HHHHHCCCEEEcCCCCCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcccHHHHHHHHH
Confidence 44567889985 6665663 55666665554322 234544433322222 135888888654321
Q ss_pred ----------------------HHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccc
Q psy7344 128 ----------------------NLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVI 184 (240)
Q Consensus 128 ----------------------~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i 184 (240)
.+.+.++.+ +.+++.|.++.|||. ++.++++. +
T Consensus 88 ~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~~~g~~~---------------~~~i~~~~----~----- 143 (369)
T 3bw2_A 88 QLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVPVVSFHFGVPD---------------REVIARLR----R----- 143 (369)
T ss_dssp HTHHHHHHTTCCCCCSCSCSSTTHHHHHHHHHHSCCSEEEEESSCCC---------------HHHHHHHH----H-----
T ss_pred HHHHHHHHcCCCcCcccccccccHHHHHHHHHhcCCCEEEEeCCCCc---------------HHHHHHHH----H-----
Confidence 123444444 347889988888752 33444433 2
Q ss_pred cCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 185 AEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 185 ~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
..+++.+++. +.+.++.+++ |+|+|.++++.
T Consensus 144 -------~g~~v~~~v~---t~~~a~~a~~~GaD~i~v~g~~ 175 (369)
T 3bw2_A 144 -------AGTLTLVTAT---TPEEARAVEAAGADAVIAQGVE 175 (369)
T ss_dssp -------TTCEEEEEES---SHHHHHHHHHTTCSEEEEECTT
T ss_pred -------CCCeEEEECC---CHHHHHHHHHcCCCEEEEeCCC
Confidence 2447776653 3345777888 99999998875
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0069 Score=50.27 Aligned_cols=103 Identities=8% Similarity=-0.109 Sum_probs=65.2
Q ss_pred hhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhh
Q psy7344 100 WPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM 179 (240)
Q Consensus 100 ~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~ 179 (240)
+++++++...+ ..|+++.-.-.++++ +.+.++.|+|+|.++.. ++.+|+.+.++.+....
T Consensus 66 ~~~i~~i~~~~---~ipvi~~g~i~~~~~---~~~~~~~Gad~V~i~~~--------------~~~~~~~~~~~~~~~g~ 125 (253)
T 1h5y_A 66 IDSVKRVAEAV---SIPVLVGGGVRSLED---ATTLFRAGADKVSVNTA--------------AVRNPQLVALLAREFGS 125 (253)
T ss_dssp HHHHHHHHHHC---SSCEEEESSCCSHHH---HHHHHHHTCSEEEESHH--------------HHHCTHHHHHHHHHHCG
T ss_pred HHHHHHHHHhc---CCCEEEECCCCCHHH---HHHHHHcCCCEEEEChH--------------HhhCcHHHHHHHHHcCC
Confidence 45666665443 468776533345554 44444568999999743 34688888888776432
Q ss_pred -ccccccCCCCCCCCee-----eEEeeeh------hcHHHHHHHHhC-CCCeEEEeccccccc
Q psy7344 180 -VHFVIAEPHCDGNDIN-----IGCPQMV------AKRGHYGAYLQD-DWPLLTELGKMAMLV 229 (240)
Q Consensus 180 -~~~~i~~~~~~~~~~p-----vsvK~r~------~~~~~~~~~l~~-G~~~itih~R~~~~~ 229 (240)
.+.+ +.+.+ +.++.+. .+..++++.+++ |++.|.+|+|++...
T Consensus 126 ~~i~~-------~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~~~~~~~G~d~i~~~~~~~~g~ 181 (253)
T 1h5y_A 126 QSTVV-------AIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGT 181 (253)
T ss_dssp GGEEE-------EEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTT
T ss_pred CcEEE-------EEEeecCCCcEEEEEeCCeecCCCCHHHHHHHHHhCCCCEEEEecccCCCC
Confidence 1100 02221 4666661 357888999999 999999999987544
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.018 Score=50.03 Aligned_cols=81 Identities=14% Similarity=0.023 Sum_probs=52.4
Q ss_pred ceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCe
Q psy7344 116 GHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDI 194 (240)
Q Consensus 116 pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~ 194 (240)
+++.. .|+. +.++.+++ |+++|++.. |.+...+...|+..+.+++.++++.+. +++
T Consensus 23 g~i~~---~~~~---~~a~~~~~~Ga~~I~~l~--p~~~~~~~~~G~~~~~~~~~i~~I~~~---------------~~i 79 (305)
T 2nv1_A 23 GVIMD---VINA---EQAKIAEEAGAVAVMALE--RVPADIRAAGGVARMADPTIVEEVMNA---------------VSI 79 (305)
T ss_dssp CEEEE---ESSH---HHHHHHHHTTCSEEEECC--C-------CCCCCCCCCHHHHHHHHHH---------------CSS
T ss_pred Ceeec---CCHH---HHHHHHHHcCCCEEEEcC--CCcchhhhccCcccCCCHHHHHHHHHh---------------CCC
Confidence 56554 3444 45565544 899996542 555445555677778899998888653 577
Q ss_pred eeEEeeehhcHHHHHHHHhC-CCCeEE
Q psy7344 195 NIGCPQMVAKRGHYGAYLQD-DWPLLT 220 (240)
Q Consensus 195 pvsvK~r~~~~~~~~~~l~~-G~~~it 220 (240)
|+.+|.|... .+.++.+++ |+|+|.
T Consensus 80 Pv~~k~r~g~-~~~~~~~~a~GAd~V~ 105 (305)
T 2nv1_A 80 PVMAKARIGH-IVEARVLEAMGVDYID 105 (305)
T ss_dssp CEEEEECTTC-HHHHHHHHHHTCSEEE
T ss_pred CEEecccccc-hHHHHHHHHCCCCEEE
Confidence 9999999643 456777888 999996
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.041 Score=49.21 Aligned_cols=125 Identities=10% Similarity=0.004 Sum_probs=71.6
Q ss_pred ecccccccCCCccccccCchhhhhhhhcccceeee-CChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHH-ccCC
Q psy7344 63 MGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQ-DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLA-EPHC 140 (240)
Q Consensus 63 vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~-~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~l-e~~~ 140 (240)
++.+.+.+||...++..+. ..++..|+.+.... ...+-+.+..... ...+.+.+ ++.+...+.++.+ +.++
T Consensus 41 l~~Pii~ApM~~vte~~lA--~A~a~~Gg~gvi~~~~s~ee~~~~i~~~---~~~~~~~~--g~~~~~~e~~~~a~~aGv 113 (361)
T 3r2g_A 41 LNLPVISANMDTITESNMA--NFMHSKGAMGALHRFMTIEENIQEFKKC---KGPVFVSV--GCTENELQRAEALRDAGA 113 (361)
T ss_dssp ESSCEEECCSTTTCSHHHH--HHHHHTTCEEBCCSCSCHHHHHHHHHTC---CSCCBEEE--CSSHHHHHHHHHHHHTTC
T ss_pred cCCCEEECCCCCchHHHHH--HHHHHcCCCEEEeCCCCHHHHHHHHhhc---ceEEEEEc--CCCHHHHHHHHHHHHcCC
Confidence 3445677899777777664 56666665443221 2233333222222 12333333 4445556666666 4589
Q ss_pred CEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeE
Q psy7344 141 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 141 d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~i 219 (240)
|.|.++..+. +++.+.++++++++.. .++||.+|.- .+.+.++.+++ |+|+|
T Consensus 114 dvI~id~a~G---------------~~~~~~e~I~~ir~~~----------~~~~Vi~G~V--~T~e~A~~a~~aGaD~I 166 (361)
T 3r2g_A 114 DFFCVDVAHA---------------HAKYVGKTLKSLRQLL----------GSRCIMAGNV--ATYAGADYLASCGADII 166 (361)
T ss_dssp CEEEEECSCC---------------SSHHHHHHHHHHHHHH----------TTCEEEEEEE--CSHHHHHHHHHTTCSEE
T ss_pred CEEEEeCCCC---------------CcHhHHHHHHHHHHhc----------CCCeEEEcCc--CCHHHHHHHHHcCCCEE
Confidence 9998865531 1223445666666651 2678888632 23456888888 99999
Q ss_pred EE
Q psy7344 220 TE 221 (240)
Q Consensus 220 ti 221 (240)
.+
T Consensus 167 ~V 168 (361)
T 3r2g_A 167 KA 168 (361)
T ss_dssp EE
T ss_pred EE
Confidence 97
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.01 Score=52.98 Aligned_cols=109 Identities=11% Similarity=-0.006 Sum_probs=67.6
Q ss_pred CceeEEee-cCCHHHHHHHHHHHcc-CCCEEEecCCCchhhh----hcccc-------------------ccc---ccCC
Q psy7344 115 CGHSLMFC-GNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVA----KRGHY-------------------GAY---LQDD 166 (240)
Q Consensus 115 ~pvivqi~-g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~----~~~g~-------------------G~~---l~~~ 166 (240)
.|...|+. -.|.+...+..++.+. |+.+|-+..=.|..-. .+.|+ ++. -..|
T Consensus 122 ~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d 201 (352)
T 3sgz_A 122 GFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKAALRALKEEKPTQSVPVLFPK 201 (352)
T ss_dssp CEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHHHHSCHHHHTTCC---------------CCC
T ss_pred ccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCcchhhhhcCCCCCcccchhhhcccccccccchhhhhccC
Confidence 46788884 4578888888888876 7777666554443100 00000 000 1123
Q ss_pred HHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCC
Q psy7344 167 WPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSW 238 (240)
Q Consensus 167 p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw 238 (240)
|....+.++++++. +++||.+|... +.+.++.+++ |+|+|+++++...|.+ .+++.|
T Consensus 202 ~~~~w~~i~~lr~~-----------~~~PvivK~v~--~~e~A~~a~~~GaD~I~vsn~GG~~~d--~~~~~~ 259 (352)
T 3sgz_A 202 ASFCWNDLSLLQSI-----------TRLPIILKGIL--TKEDAELAMKHNVQGIVVSNHGGRQLD--EVSASI 259 (352)
T ss_dssp TTCCHHHHHHHHHH-----------CCSCEEEEEEC--SHHHHHHHHHTTCSEEEECCGGGTSSC--SSCCHH
T ss_pred CCCCHHHHHHHHHh-----------cCCCEEEEecC--cHHHHHHHHHcCCCEEEEeCCCCCccC--CCccHH
Confidence 43444456666666 78899999873 3567888889 9999999887766653 345444
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.025 Score=50.47 Aligned_cols=91 Identities=15% Similarity=0.105 Sum_probs=60.3
Q ss_pred HHHHHHHHHHcc-CCCEEEecCC---------CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~g---------CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+++.++|++..+ |+|+|+|..+ .|..-...-.||..+-..--.+.+|++++++.+ .+-+|
T Consensus 152 ~~F~~AA~rA~~AGFDgVEIH~ahGYLl~QFLSp~tN~RtDeYGGS~eNR~Rf~~Eii~avr~~v----------g~~~v 221 (358)
T 4a3u_A 152 DDYEKAARHALKAGFDGVQIHAANGYLIDEFIRDSTNHRHDEYGGAVENRIRLLKDVTERVIATI----------GKERT 221 (358)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHH----------CGGGE
T ss_pred HHHHHHHHHHHHcCCCeEeecccCCCcHHhceecccCCeeCCCCCCHHHHHHHHHHHHHHHHHHc----------Cccce
Confidence 456777777755 8999999876 343222334566665444446788999999874 23357
Q ss_pred EEeeeh-------------hcHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 197 GCPQMV-------------AKRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 197 svK~r~-------------~~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
.+|+.. .....+++.+++ |++.+.++.....
T Consensus 222 ~vRls~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 266 (358)
T 4a3u_A 222 AVRLSPNGEIQGTVDSHPEQVFIPAAKMLSDLDIAFLGMREGAVD 266 (358)
T ss_dssp EEEECCSSCBTTBCCSSTHHHHHHHHHHHHHHTCSEEEEECCBTT
T ss_pred EEEeccCcccCCCcccchHHHHHHHHHhhhccCcccccccccccc
Confidence 777761 123567788889 9999998765433
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.066 Score=47.85 Aligned_cols=80 Identities=14% Similarity=0.113 Sum_probs=59.1
Q ss_pred CceeEEeecCCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCC
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGND 193 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~ 193 (240)
.|+...+.+.+++++.+.++.+ +.|+++|.++.|| +++...++++++++++ + +
T Consensus 137 v~~~~~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~e~v~avr~a~---------g-d 190 (384)
T 2pgw_A 137 VGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGR----------------GEKLDLEITAAVRGEI---------G-D 190 (384)
T ss_dssp EEBCEECCCSSHHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHHTTS---------T-T
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHcCCCEEEECcCC----------------CHHHHHHHHHHHHHHc---------C-C
Confidence 4554445557898888776665 5689999999885 5566678888888872 2 5
Q ss_pred eeeEEeee----hhcHHHHHHHHhC-CCCeEE
Q psy7344 194 INIGCPQM----VAKRGHYGAYLQD-DWPLLT 220 (240)
Q Consensus 194 ~pvsvK~r----~~~~~~~~~~l~~-G~~~it 220 (240)
+++.++.. .++..++++.|++ |+++|-
T Consensus 191 ~~l~vD~n~~~~~~~a~~~~~~l~~~~i~~iE 222 (384)
T 2pgw_A 191 ARLRLDANEGWSVHDAINMCRKLEKYDIEFIE 222 (384)
T ss_dssp CEEEEECTTCCCHHHHHHHHHHHGGGCCSEEE
T ss_pred cEEEEecCCCCCHHHHHHHHHHHHhcCCCEEe
Confidence 67777655 3567889999999 999874
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.0036 Score=56.43 Aligned_cols=99 Identities=11% Similarity=-0.041 Sum_probs=59.8
Q ss_pred CchhHHHHHHHhhcccCCCceeecccccccCCCccccccCchhhhhhh--hcccce-eeeCChhhHHHhhhcccCCCCce
Q psy7344 41 DWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAK--RGHYGA-YLQDDWPLLTELGFKTRSHMCGH 117 (240)
Q Consensus 41 ~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~dl~~gC~~~i~~--~g~~ga-~l~~d~eli~~i~~~~~~~~~pv 117 (240)
+|++..+++.++. +..+.|+.+|- +..+..-..-...| ...+.+ ||+... ....+++.+.++...+. .|+
T Consensus 209 ~p~~~~~~i~~i~-~~~~~Pv~vkg--v~t~e~a~~a~~aG-ad~I~vs~~gg~~~d~~~~~~~~l~~v~~~~~---~pV 281 (380)
T 1p4c_A 209 DASFNWEALRWLR-DLWPHKLLVKG--LLSAEDADRCIAEG-ADGVILSNHGGRQLDCAISPMEVLAQSVAKTG---KPV 281 (380)
T ss_dssp CTTCCHHHHHHHH-HHCCSEEEEEE--ECCHHHHHHHHHTT-CSEEEECCGGGTSCTTCCCGGGTHHHHHHHHC---SCE
T ss_pred CccccHHHHHHHH-HhcCCCEEEEe--cCcHHHHHHHHHcC-CCEEEEcCCCCCcCCCCcCHHHHHHHHHHHcC---CeE
Confidence 7888888999998 46688988872 11110000001344 233333 443211 11234677777765442 477
Q ss_pred eEEeecCCHHHHHHHHHHHccCCCEEEecCCC
Q psy7344 118 SLMFCGNDSKNLTEAAKLAEPHCDGIDINIGC 149 (240)
Q Consensus 118 ivqi~g~d~~~~~~aa~~le~~~d~Idin~gC 149 (240)
+.. +++.+..++++.+..|+|+|.+++..
T Consensus 282 ia~---GGI~~~~dv~kal~~GAdaV~iGr~~ 310 (380)
T 1p4c_A 282 LID---SGFRRGSDIVKALALGAEAVLLGRAT 310 (380)
T ss_dssp EEC---SSCCSHHHHHHHHHTTCSCEEESHHH
T ss_pred EEE---CCCCCHHHHHHHHHhCCcHhhehHHH
Confidence 655 77777778888888899999998763
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.051 Score=45.76 Aligned_cols=100 Identities=6% Similarity=-0.180 Sum_probs=60.3
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhccccccccc-C--CHHHHHHHHH
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ-D--DWPLLTNLVY 175 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~-~--~p~~i~~iv~ 175 (240)
+.++++++...+ ..|+++.-+-++++++. +.++.|+|+|-++.. ++ . +|+.++++++
T Consensus 62 ~~~~i~~i~~~~---~iPvi~~ggi~~~~~i~---~~~~~Gad~v~lg~~--------------~~~~~~~~~~~~~~~~ 121 (266)
T 2w6r_A 62 DTEMIRFVRPLT---TLPIIASGGAGKMEHFL---EAFLAGADKALAASV--------------FHFREIDMRELKEYLK 121 (266)
T ss_dssp CHHHHHHHGGGC---CSCEEEESCCCSTHHHH---HHHHHTCSEEECCCC--------------C------CHHHHHHCC
T ss_pred cHHHHHHHHHhc---CCCEEEECCCCCHHHHH---HHHHcCCcHhhhhHH--------------HHhCCCCHHHHHHHHH
Confidence 467777765443 47887753234555544 444458899888665 33 3 7888877766
Q ss_pred Hhh---hccccccCCCCCCCCeeeE---------Eeee-h-----hcHHHHHHHHhC-CCCeEEEeccccccc
Q psy7344 176 SPN---MVHFVIAEPHCDGNDINIG---------CPQM-V-----AKRGHYGAYLQD-DWPLLTELGKMAMLV 229 (240)
Q Consensus 176 ~~~---~~~~~i~~~~~~~~~~pvs---------vK~r-~-----~~~~~~~~~l~~-G~~~itih~R~~~~~ 229 (240)
... +. .-+.++ ++++ + .+..++++.+++ |++.|.+|.+++...
T Consensus 122 ~~g~~~~~-----------i~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~t~~~~~g~ 183 (266)
T 2w6r_A 122 KHGGSGQA-----------VVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGT 183 (266)
T ss_dssp ----CCCE-----------EEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTT
T ss_pred HcCCCCCE-----------EEEEEEEEecCCCEEEEECCCceecchhHHHHHHHHHHcCCCEEEEEeecCCCC
Confidence 543 11 012233 3333 2 257889999999 999999999887765
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.1 Score=44.12 Aligned_cols=83 Identities=10% Similarity=-0.023 Sum_probs=60.6
Q ss_pred eeEEeecCCHHHHHHHHHHHcc-CCC--EEEecCC--CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEP-HCD--GIDINIG--CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~-~~d--~Idin~g--CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
+..+|...|...+.+..+.+++ |+| .+|+--| .|+. .--|+ +++++++.
T Consensus 30 i~pSilsaD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpni-----------t~G~~----~v~~lr~~----------- 83 (246)
T 3inp_A 30 INPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNL-----------TFGPM----VLKALRDY----------- 83 (246)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCB-----------CCCHH----HHHHHHHH-----------
T ss_pred eehhhhcCChhhHHHHHHHHHHcCCCEEEEEecCCCcCcch-----------hcCHH----HHHHHHHh-----------
Confidence 5667888899989999998876 676 5666444 1222 12344 44555554
Q ss_pred C-CeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 192 N-DINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 192 ~-~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+ ++|+-+.+.+.+..++.+.+.+ |+|.||+|.-.
T Consensus 84 ~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~Ea 119 (246)
T 3inp_A 84 GITAGMDVHLMVKPVDALIESFAKAGATSIVFHPEA 119 (246)
T ss_dssp TCCSCEEEEEECSSCHHHHHHHHHHTCSEEEECGGG
T ss_pred CCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEcccc
Confidence 5 7799999998888889999999 99999999753
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.077 Score=45.46 Aligned_cols=98 Identities=10% Similarity=-0.000 Sum_probs=61.8
Q ss_pred CceeEEeecCCH--HHHHHHHHHHcc-CCCEEEecCC--Cch---hhhhcccccccc--cCCHHHHHHHHHHhhhccccc
Q psy7344 115 CGHSLMFCGNDS--KNLTEAAKLAEP-HCDGIDINIG--CPQ---MVAKRGHYGAYL--QDDWPLLTNLVYSPNMVHFVI 184 (240)
Q Consensus 115 ~pvivqi~g~d~--~~~~~aa~~le~-~~d~Idin~g--CP~---~~~~~~g~G~~l--~~~p~~i~~iv~~~~~~~~~i 184 (240)
..++.-|..+|| +.+.+.++.+++ |+|.|+|+.= =|. +.+.+.. -.+| .-+.+.+-++++.+++..
T Consensus 18 ~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~-~~AL~~G~~~~~~~~~v~~ir~~~--- 93 (267)
T 3vnd_A 18 GAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGAN-LRSLAAGTTSSDCFDIITKVRAQH--- 93 (267)
T ss_dssp CEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHC---
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHH-HHHHHcCCCHHHHHHHHHHHHhcC---
Confidence 346667766766 889999998875 8999999832 111 1111100 0001 134555667777777641
Q ss_pred cCCCCCCCCeeeEEeeehh-----cHHHHHHHHhC-CCCeEEEec
Q psy7344 185 AEPHCDGNDINIGCPQMVA-----KRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 185 ~~~~~~~~~~pvsvK~r~~-----~~~~~~~~l~~-G~~~itih~ 223 (240)
.++|+.+-.-++ -+..|++.+.+ |+|.+.+|-
T Consensus 94 -------~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~D 131 (267)
T 3vnd_A 94 -------PDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIAD 131 (267)
T ss_dssp -------TTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETT
T ss_pred -------CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCC
Confidence 467877754433 24789999999 999999974
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.2 Score=44.59 Aligned_cols=98 Identities=15% Similarity=-0.027 Sum_probs=65.0
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
.|+.++.+...+ +.|++++.. .++ .++.+..+.|+|+|.+.-. .- +.-.| ....++.+.++.+++.
T Consensus 205 ~w~~i~~lr~~~---~~PvivK~v-~~~---e~A~~a~~~GaD~I~vsn~---GG--~~~d~--~~~~~~~L~~i~~av~ 270 (352)
T 3sgz_A 205 CWNDLSLLQSIT---RLPIILKGI-LTK---EDAELAMKHNVQGIVVSNH---GG--RQLDE--VSASIDALREVVAAVK 270 (352)
T ss_dssp CHHHHHHHHHHC---CSCEEEEEE-CSH---HHHHHHHHTTCSEEEECCG---GG--TSSCS--SCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhc---CCCEEEEec-CcH---HHHHHHHHcCCCEEEEeCC---CC--CccCC--CccHHHHHHHHHHHhC
Confidence 478888776554 479999865 233 2344444569999997321 00 01111 1466788888877653
Q ss_pred hccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEecc
Q psy7344 179 MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224 (240)
Q Consensus 179 ~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R 224 (240)
. ++||.+-..+.+-.+.++++..||+++.+ ||
T Consensus 271 ~-------------~ipVia~GGI~~g~Dv~kaLalGA~aV~i-Gr 302 (352)
T 3sgz_A 271 G-------------KIEVYMDGGVRTGTDVLKALALGARCIFL-GR 302 (352)
T ss_dssp T-------------SSEEEEESSCCSHHHHHHHHHTTCSEEEE-SH
T ss_pred C-------------CCeEEEECCCCCHHHHHHHHHcCCCEEEE-CH
Confidence 2 45777777788888999999889999998 76
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=94.35 E-value=0.17 Score=45.31 Aligned_cols=129 Identities=9% Similarity=-0.012 Sum_probs=72.3
Q ss_pred ecccccccCCCccccccCchhhhhhhhcccceee-eCChhhHHHhhhcccCCCCceeEEeec-CCHHHHHHHHHHHccCC
Q psy7344 63 MGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYL-QDDWPLLTELGFKTRSHMCGHSLMFCG-NDSKNLTEAAKLAEPHC 140 (240)
Q Consensus 63 vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l-~~d~eli~~i~~~~~~~~~pvivqi~g-~d~~~~~~aa~~le~~~ 140 (240)
++.+.+.+||...++..+- ..++..|+.|..- ..+++...+.+..++.. .++.+.+.. .+++....+..+++.++
T Consensus 45 l~~Pii~apM~~vs~~~lA--~avA~aGGlg~i~~~~s~e~~~~~i~~vk~~-~~l~vga~vg~~~~~~~~~~~lieaGv 121 (366)
T 4fo4_A 45 LNIPMVSASMDTVTEARLA--IALAQEGGIGFIHKNMSIEQQAAQVHQVKIS-GGLRVGAAVGAAPGNEERVKALVEAGV 121 (366)
T ss_dssp ESSSEEECCCTTTCSHHHH--HHHHHTTCEEEECSSSCHHHHHHHHHHHHTT-TSCCCEEECCSCTTCHHHHHHHHHTTC
T ss_pred cCCCEEeCCCCCCChHHHH--HHHHHcCCceEeecCCCHHHHHHHHHHHHhc-CceeEEEEeccChhHHHHHHHHHhCCC
Confidence 3445677899988876653 5567667655432 23344444333333321 234334322 23333333444456689
Q ss_pred CEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeE
Q psy7344 141 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 141 d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~i 219 (240)
|.|.|+.. + .+++.+.+.++.+++.. .++||.+..- .+.+.++.+++ |+|+|
T Consensus 122 d~I~idta--------~-------G~~~~~~~~I~~ik~~~----------p~v~Vi~G~v--~t~e~A~~a~~aGAD~I 174 (366)
T 4fo4_A 122 DVLLIDSS--------H-------GHSEGVLQRIRETRAAY----------PHLEIIGGNV--ATAEGARALIEAGVSAV 174 (366)
T ss_dssp SEEEEECS--------C-------TTSHHHHHHHHHHHHHC----------TTCEEEEEEE--CSHHHHHHHHHHTCSEE
T ss_pred CEEEEeCC--------C-------CCCHHHHHHHHHHHHhc----------CCCceEeeee--CCHHHHHHHHHcCCCEE
Confidence 99988754 1 13334445666666651 2567765321 34567888889 99999
Q ss_pred EE
Q psy7344 220 TE 221 (240)
Q Consensus 220 ti 221 (240)
.+
T Consensus 175 ~v 176 (366)
T 4fo4_A 175 KV 176 (366)
T ss_dssp EE
T ss_pred EE
Confidence 99
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=94.27 E-value=0.12 Score=42.49 Aligned_cols=84 Identities=13% Similarity=0.138 Sum_probs=55.0
Q ss_pred eeEEeecCCHHHHHHHHHHHcc-CCCEEEecC--CCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCC
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEP-HCDGIDINI--GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGND 193 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~-~~d~Idin~--gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~ 193 (240)
++..|...|+.++.+.++.+.+ |+|.|.+.. | |... .+-.-++.+++ +++. ++
T Consensus 13 i~p~i~a~d~~~~~~~i~~~~~~G~d~i~l~~~dg-~f~~--------~~~~~~~~i~~----l~~~-----------~~ 68 (230)
T 1rpx_A 13 VSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDG-RFVP--------NITIGPLVVDS----LRPI-----------TD 68 (230)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBS-SSSS--------CBCCCHHHHHH----HGGG-----------CC
T ss_pred EEEEeecCCHHHHHHHHHHHHHCCCCEEEEeeccC-Cccc--------ccccCHHHHHH----HHhc-----------cC
Confidence 4556678899998888888865 788777753 2 1100 01112444444 4443 34
Q ss_pred eeeEEeeehhcHHHHHHHHhC-CCCeEEEecc
Q psy7344 194 INIGCPQMVAKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 194 ~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R 224 (240)
.|+.+-+-+.+..++++.+.+ |+|.|++|+-
T Consensus 69 ~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh~~ 100 (230)
T 1rpx_A 69 LPLDVHLMIVEPDQRVPDFIKAGADIVSVHCE 100 (230)
T ss_dssp SCEEEEEESSSHHHHHHHHHHTTCSEEEEECS
T ss_pred CcEEEEEEecCHHHHHHHHHHcCCCEEEEEec
Confidence 466666666667778888888 9999999987
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.16 Score=45.44 Aligned_cols=80 Identities=5% Similarity=-0.134 Sum_probs=60.7
Q ss_pred CCceeEEeecCCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
..|+..++...+++++.+.++.+ +.|+..|.++.|| +++.-.+.++++++++ +.
T Consensus 134 ~v~~~~~~~~~~~e~~~~~a~~~~~~G~~~iKiK~G~----------------~~~~d~~~v~avR~a~---------g~ 188 (378)
T 3eez_A 134 PRPIASSVGAKSVEETRAVIDRYRQRGYVAHSVKIGG----------------DVERDIARIRDVEDIR---------EP 188 (378)
T ss_dssp CEEBBCCBCSCCHHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHTTSC---------CT
T ss_pred eEEEEEEecCCCHHHHHHHHHHHHhCCCCEEEeccCC----------------CHHHHHHHHHHHHHHc---------CC
Confidence 35676677778999988877665 5699999999985 4566667888888872 13
Q ss_pred CeeeEEeee----hhcHHHHHHHHhC-CCCeE
Q psy7344 193 DINIGCPQM----VAKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 193 ~~pvsvK~r----~~~~~~~~~~l~~-G~~~i 219 (240)
++++.++.. .++..++++.|++ |+ +|
T Consensus 189 ~~~l~vDan~~~~~~~a~~~~~~l~~~~i-~i 219 (378)
T 3eez_A 189 GEIVLYDVNRGWTRQQALRVMRATEDLHV-MF 219 (378)
T ss_dssp TCEEEEECTTCCCHHHHHHHHHHTGGGTC-CE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhccCCe-EE
Confidence 678887776 3567889999999 98 76
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=94.03 E-value=0.25 Score=41.98 Aligned_cols=95 Identities=8% Similarity=-0.050 Sum_probs=59.1
Q ss_pred CceeEEeecCCH--HHHHHHHHHHcc-CCCEEEecCCCchhh------------hhcccccccccCCHHHHHHHHHHhhh
Q psy7344 115 CGHSLMFCGNDS--KNLTEAAKLAEP-HCDGIDINIGCPQMV------------AKRGHYGAYLQDDWPLLTNLVYSPNM 179 (240)
Q Consensus 115 ~pvivqi~g~d~--~~~~~aa~~le~-~~d~Idin~gCP~~~------------~~~~g~G~~l~~~p~~i~~iv~~~~~ 179 (240)
..++..|..+|+ +.+.+.++.+++ |+|.|+++.--..+. +...| -+.+..-++++.+++
T Consensus 17 ~~~i~~i~~gdp~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G------~~~~~~~~~v~~ir~ 90 (268)
T 1qop_A 17 GAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAG------VTPAQCFEMLAIIRE 90 (268)
T ss_dssp CEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTT------CCHHHHHHHHHHHHH
T ss_pred ceEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcC------CCHHHHHHHHHHHHh
Confidence 346666766776 888888888876 799999976211010 01111 133444466777666
Q ss_pred ccccccCCCCCCCCeeeEEeeehh-----cHHHHHHHHhC-CCCeEEEeccc
Q psy7344 180 VHFVIAEPHCDGNDINIGCPQMVA-----KRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 180 ~~~~i~~~~~~~~~~pvsvK~r~~-----~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.. +++|+.+=..++ .+.++++.+.+ |+|++++|.=+
T Consensus 91 ~~----------~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~ 132 (268)
T 1qop_A 91 KH----------PTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVP 132 (268)
T ss_dssp HC----------SSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCC
T ss_pred cC----------CCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCC
Confidence 41 366876511121 34789999999 99999998644
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=93.83 E-value=0.3 Score=42.49 Aligned_cols=100 Identities=5% Similarity=-0.094 Sum_probs=60.9
Q ss_pred CCceeEEee-c-CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCC
Q psy7344 114 MCGHSLMFC-G-NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCD 190 (240)
Q Consensus 114 ~~pvivqi~-g-~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~ 190 (240)
+.|+++-+- | ++++...+.++.+++ |+.+|.|-=+-..+..-|- .|..|..--+.+.+|..+....
T Consensus 83 ~~PviaD~d~Gyg~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cGh~-~gk~l~~~~e~~~ri~Aa~~A~---------- 151 (298)
T 3eoo_A 83 NLPLLVDIDTGWGGAFNIARTIRSFIKAGVGAVHLEDQVGQKRCGHR-PGKECVPAGEMVDRIKAAVDAR---------- 151 (298)
T ss_dssp CSCEEEECTTCSSSHHHHHHHHHHHHHTTCSEEEEECBCCCCCTTCC-CCCCBCCHHHHHHHHHHHHHHC----------
T ss_pred CCeEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCcccCCC-CCCeecCHHHHHHHHHHHHHhc----------
Confidence 478888762 2 488888887787754 8999988655322221111 2334444444555555444333
Q ss_pred CCCeeeEEeee--------hhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 191 GNDINIGCPQM--------VAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 191 ~~~~pvsvK~r--------~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.+.++.+.-| ++++++-++++.+ |||.|-+|+.+
T Consensus 152 -~~~~~~I~ARTDa~~~~gldeai~Ra~ay~~AGAD~if~~~~~ 194 (298)
T 3eoo_A 152 -TDETFVIMARTDAAAAEGIDAAIERAIAYVEAGADMIFPEAMK 194 (298)
T ss_dssp -SSTTSEEEEEECTHHHHHHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred -cCCCeEEEEeehhhhhcCHHHHHHHHHhhHhcCCCEEEeCCCC
Confidence 2234444444 3456777788888 99999999975
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=93.73 E-value=0.14 Score=42.69 Aligned_cols=86 Identities=12% Similarity=0.107 Sum_probs=57.8
Q ss_pred eeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++.+|...|...+.+.++.+++ |+|.|.+.. ..+.+=..+..-+ ++++.+++. ++.|
T Consensus 7 i~psila~D~~~l~~~i~~~~~~Gad~ihldi-------~DG~fvp~~~~g~----~~v~~lr~~-----------~~~~ 64 (230)
T 1tqj_A 7 VAPSILSADFSRLGEEIKAVDEAGADWIHVDV-------MDGRFVPNITIGP----LIVDAIRPL-----------TKKT 64 (230)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEE-------EBSSSSSCBCBCH----HHHHHHGGG-----------CCSE
T ss_pred EEEEeeecCHhHHHHHHHHHHHcCCCEEEEEE-------EecCCCcchhhhH----HHHHHHHhh-----------cCCc
Confidence 5667778898899998888866 788754432 1111100111123 456666665 5668
Q ss_pred eEEeeehhcHHHHHHHHhC-CCCeEEEecc
Q psy7344 196 IGCPQMVAKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 196 vsvK~r~~~~~~~~~~l~~-G~~~itih~R 224 (240)
+-+-+.+.+..++.+.+.+ |+|++++|.=
T Consensus 65 ~~vhlmv~dp~~~i~~~~~aGadgv~vh~e 94 (230)
T 1tqj_A 65 LDVHLMIVEPEKYVEDFAKAGADIISVHVE 94 (230)
T ss_dssp EEEEEESSSGGGTHHHHHHHTCSEEEEECS
T ss_pred EEEEEEccCHHHHHHHHHHcCCCEEEECcc
Confidence 8877777777778898999 9999999965
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=93.71 E-value=0.25 Score=42.36 Aligned_cols=85 Identities=13% Similarity=0.055 Sum_probs=57.5
Q ss_pred CceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCC
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGND 193 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~ 193 (240)
.|+++.+.. .+.++.+++ |+++|.++.+.|...... .|..+..+++.++++.+ . ++
T Consensus 22 ~~~i~~~~~------~~~a~~~~~~Ga~~i~~~e~v~~~~~~~--~G~~~~~~~~~i~~i~~----~-----------~~ 78 (297)
T 2zbt_A 22 GGVIMDVTT------PEQAVIAEEAGAVAVMALERVPADIRAQ--GGVARMSDPKIIKEIMA----A-----------VS 78 (297)
T ss_dssp TEEEEEESS------HHHHHHHHHHTCSEEEECSSCHHHHHHT--TCCCCCCCHHHHHHHHT----T-----------CS
T ss_pred CCeeeeech------HHHHHHHHHCCCcEEEeccccchHHHhh--cCCccCCCHHHHHHHHH----h-----------cC
Confidence 467776533 456666654 899999987766542222 34456778887766553 3 57
Q ss_pred eeeEEeeehhcHHHHHHHHhC-CCCeEEEec
Q psy7344 194 INIGCPQMVAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 194 ~pvsvK~r~~~~~~~~~~l~~-G~~~itih~ 223 (240)
+|+.++.+..+ .+.++.+++ |+|+|..|.
T Consensus 79 ~Pvi~~~~~~~-~~~~~~~~~aGad~v~~~~ 108 (297)
T 2zbt_A 79 IPVMAKVRIGH-FVEAMILEAIGVDFIDESE 108 (297)
T ss_dssp SCEEEEEETTC-HHHHHHHHHTTCSEEEEET
T ss_pred CCeEEEeccCC-HHHHHHHHHCCCCEEeeeC
Confidence 79998888654 677888888 999995543
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.028 Score=47.95 Aligned_cols=110 Identities=10% Similarity=-0.090 Sum_probs=59.4
Q ss_pred CCcccCCC-----chhHHHHHHHhhcccCCC--ceeec---c---cccccCCCccc------cccCch---hhhhhhhcc
Q psy7344 34 YGAYLQDD-----WPLLTELVVHFSWVSKNG--PLFMG---P---LFIAEPHCDGI------DINIGC---PQMVAKRGH 91 (240)
Q Consensus 34 ~G~~l~~~-----~~l~~~iv~ql~~~~~~~--p~~vk---~---~~~lap~~~~~------dl~~gC---~~~i~~~g~ 91 (240)
.||+++++ |+++.+++.++. .... ++.++ . .....++...+ ++.-++ ...+..|+.
T Consensus 102 igs~a~~~~g~~~p~~~~~~~~~~g--~~~ivv~iD~k~~~~~g~~V~~~gw~~~t~~~~~~e~a~~~~~~a~~il~t~i 179 (260)
T 2agk_A 102 VTSWLFTKEGHFQLKRLERLTELCG--KDRIVVDLSCRKTQDGRWIVAMNKWQTLTDLELNADTFRELRKYTNEFLIHAA 179 (260)
T ss_dssp ECGGGBCTTCCBCHHHHHHHHHHHC--GGGEEEEEEEEEEETTEEEEEETTTTEEEEEEESHHHHHHHTTTCSEEEEEC-
T ss_pred ECcHHHhhcCCCCHHHHHHHHHHhC--cCcEEEEEEeeecCCCceEEEEcCCccccCccHHHHHHHHHHHhcCEEEEEee
Confidence 67999999 999999988875 1222 22222 0 00111232211 110000 122333443
Q ss_pred cce--eeeCChhhHHHhhhcccC-CCCceeEEeecCCHHHHHHHHHHHcc--CCCEEEecCC
Q psy7344 92 YGA--YLQDDWPLLTELGFKTRS-HMCGHSLMFCGNDSKNLTEAAKLAEP--HCDGIDINIG 148 (240)
Q Consensus 92 ~ga--~l~~d~eli~~i~~~~~~-~~~pvivqi~g~d~~~~~~aa~~le~--~~d~Idin~g 148 (240)
+.. +.-.|+++++++...+.+ ...|++.+ ++..+..++.++++. |+++++++.+
T Consensus 180 ~~dG~~~G~d~eli~~l~~~~~~~~~iPVIas---GGi~s~ed~~~l~~~~~G~~gvivg~a 238 (260)
T 2agk_A 180 DVEGLCGGIDELLVSKLFEWTKDYDDLKIVYA---GGAKSVDDLKLVDELSHGKVDLTFGSS 238 (260)
T ss_dssp ------CCCCHHHHHHHHHHHTTCSSCEEEEE---SCCCCTHHHHHHHHHHTTCEEEECCTT
T ss_pred ccccCcCCCCHHHHHHHHHhhcccCCceEEEe---CCCCCHHHHHHHHHhcCCCCEEEeeCC
Confidence 332 223479999998765410 03688776 555555566666654 8999999887
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=93.64 E-value=0.36 Score=41.77 Aligned_cols=104 Identities=8% Similarity=-0.095 Sum_probs=61.3
Q ss_pred CCceeEEee-c-CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccc-cccccCCHHHHHHHHHHhhhccccccCCCC
Q psy7344 114 MCGHSLMFC-G-NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHY-GAYLQDDWPLLTNLVYSPNMVHFVIAEPHC 189 (240)
Q Consensus 114 ~~pvivqi~-g-~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~-G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~ 189 (240)
+.|+++-+- | ++++...+.++.+++ |+.+|.|-=+-..++..|-+. |..|..-.+.+.+|..+.....
T Consensus 75 ~~PviaD~d~Gyg~~~~~~~~v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~-------- 146 (290)
T 2hjp_A 75 SIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARA-------- 146 (290)
T ss_dssp SSCEEEECTTTTSSHHHHHHHHHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCS--------
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhcc--------
Confidence 578887762 2 488888887777765 899998876642232222221 3334333344555554443331
Q ss_pred CCCCeeeEEeee-------hhcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 190 DGNDINIGCPQM-------VAKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 190 ~~~~~pvsvK~r-------~~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
. .++-|..++. ++.+++-++++++ |||.|.+|+|..
T Consensus 147 ~-~~~~i~aRtda~~a~~g~~~ai~Ra~ay~eAGAd~i~~e~~~~ 190 (290)
T 2hjp_A 147 D-RDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQK 190 (290)
T ss_dssp S-TTSEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCCCS
T ss_pred c-CCcEEEEeehHhhccccHHHHHHHHHHHHHcCCcEEEeCCCCC
Confidence 0 2334445443 2567778888899 999999999543
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=93.45 E-value=0.25 Score=44.00 Aligned_cols=79 Identities=10% Similarity=0.049 Sum_probs=57.9
Q ss_pred CceeEEeecCCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCC
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGND 193 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~ 193 (240)
.|+...+...+++++.+.++.+ +.|+++|.++.|+ +++...++++++++++ +.+
T Consensus 135 v~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~e~v~avr~a~---------g~d 189 (379)
T 2rdx_A 135 APMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGA----------------DWQSDIDRIRACLPLL---------EPG 189 (379)
T ss_dssp EEBCEECCCSCSHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHGGGS---------CTT
T ss_pred eeEEEEecCCCHHHHHHHHHHHHHcCCCEEEEeccC----------------CHHHHHHHHHHHHHhc---------CCC
Confidence 4554444446888888776665 5689999998884 4566678888888872 136
Q ss_pred eeeEEeee----hhcHHHHHHHHhC-CCCeE
Q psy7344 194 INIGCPQM----VAKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 194 ~pvsvK~r----~~~~~~~~~~l~~-G~~~i 219 (240)
+++.++.. .++..++++.|++ |+ +|
T Consensus 190 ~~l~vDan~~~~~~~a~~~~~~l~~~~i-~i 219 (379)
T 2rdx_A 190 EKAMADANQGWRVDNAIRLARATRDLDY-IL 219 (379)
T ss_dssp CEEEEECTTCSCHHHHHHHHHHTTTSCC-EE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhCCe-EE
Confidence 78888766 3567889999999 99 76
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=93.39 E-value=0.19 Score=41.88 Aligned_cols=85 Identities=16% Similarity=0.056 Sum_probs=58.8
Q ss_pred eeEEeecCCHHHHHHHHHHHcc-CCC--EEEecCCC--chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEP-HCD--GIDINIGC--PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~-~~d--~Idin~gC--P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
+..+|..-|...+.+..+.+++ |+| ++|+--|- |+. .--|+.++++.+.. +
T Consensus 7 i~psil~~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~-----------~~G~~~v~~ir~~~--~----------- 62 (228)
T 3ovp_A 7 IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNI-----------TFGHPVVESLRKQL--G----------- 62 (228)
T ss_dssp EEEBCTTSCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCB-----------CBCHHHHHHHHHHH--C-----------
T ss_pred eeeeheeCCchhHHHHHHHHHHcCCCEEEEEecCCCcCccc-----------ccCHHHHHHHHHhh--C-----------
Confidence 4456667788888898888876 676 56665441 222 12455555554431 1
Q ss_pred CCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 192 NDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 192 ~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.++|+.+++.+.+..++.+.+.+ |+|.||+|.=.
T Consensus 63 ~~~~~dvhLmv~~p~~~i~~~~~aGad~itvH~Ea 97 (228)
T 3ovp_A 63 QDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEA 97 (228)
T ss_dssp SSSCEEEEEECSCGGGGHHHHHHHTCSEEEEEGGG
T ss_pred CCCcEEEEEEeCCHHHHHHHHHHcCCCEEEEccCC
Confidence 35689999998877888899999 99999999843
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=93.36 E-value=0.18 Score=44.51 Aligned_cols=81 Identities=21% Similarity=0.080 Sum_probs=57.8
Q ss_pred CceeEEeecCCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCC
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGND 193 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~ 193 (240)
.|+...+...+++++.+.++.+ +.|++.|.++.||+ +++...++++++++++ +.+
T Consensus 134 vp~~~~~g~~~~~~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~---------g~~ 189 (359)
T 1mdl_A 134 VQAYDSHSLDGVKLATERAVTAAELGFRAVKTRIGYP---------------ALDQDLAVVRSIRQAV---------GDD 189 (359)
T ss_dssp EEEEEECCSCHHHHHHHHHHHHHHTTCSEEEEECCCS---------------SHHHHHHHHHHHHHHH---------CSS
T ss_pred eeeeeecCCCCHHHHHHHHHHHHHcCCCEEEEecCCC---------------CHHHHHHHHHHHHHHh---------CCC
Confidence 4554443235788887766655 56899999998862 4556667788888762 136
Q ss_pred eeeEEeee----hhcHHHHHHHHhC-CCCeE
Q psy7344 194 INIGCPQM----VAKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 194 ~pvsvK~r----~~~~~~~~~~l~~-G~~~i 219 (240)
+++.++.. .++..++++.|++ |+++|
T Consensus 190 ~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i 220 (359)
T 1mdl_A 190 FGIMVDYNQSLDVPAAIKRSQALQQEGVTWI 220 (359)
T ss_dssp SEEEEECTTCSCHHHHHHHHHHHHHHTCSCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhCCCeE
Confidence 78887766 3567889999999 99987
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=93.30 E-value=0.12 Score=43.57 Aligned_cols=97 Identities=11% Similarity=0.039 Sum_probs=60.5
Q ss_pred CceeEEeecCCH--HHHHHHHHHHcc-CCCEEEecCCCchhhhhcccc-----cccc--cCCHHHHHHHHHHhhhccccc
Q psy7344 115 CGHSLMFCGNDS--KNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHY-----GAYL--QDDWPLLTNLVYSPNMVHFVI 184 (240)
Q Consensus 115 ~pvivqi~g~d~--~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~-----G~~l--~~~p~~i~~iv~~~~~~~~~i 184 (240)
..++..|..+|+ +++.+.++.+++ |+|.|+++.-+..+.. .+.. ..++ ..+++...++++.+++.
T Consensus 18 ~~~~~~i~~g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~-dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~---- 92 (262)
T 1rd5_A 18 TAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYI-DGPIIQASVARALASGTTMDAVLEMLREVTPE---- 92 (262)
T ss_dssp CEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTT-SCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGG----
T ss_pred ceEEEEeeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCccc-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc----
Confidence 346666666666 788888888865 7999999876543221 0000 0000 13677777888888887
Q ss_pred cCCCCCCCCeeeEEeeehhcHH-HHHHHHhC-CCCeEEEec
Q psy7344 185 AEPHCDGNDINIGCPQMVAKRG-HYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 185 ~~~~~~~~~~pvsvK~r~~~~~-~~~~~l~~-G~~~itih~ 223 (240)
+++|+.+..+++... ...+.+.+ |+|++++|.
T Consensus 93 -------~~~Pv~~m~~~~~~~~~~~~~a~~aGadgv~v~d 126 (262)
T 1rd5_A 93 -------LSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPD 126 (262)
T ss_dssp -------CSSCEEEECCSHHHHSCCTHHHHHTTCCEEECTT
T ss_pred -------CCCCEEEEecCcHHHHHHHHHHHHcCCCEEEEcC
Confidence 678988865443211 11223666 999999875
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=93.28 E-value=0.15 Score=42.19 Aligned_cols=87 Identities=20% Similarity=0.203 Sum_probs=55.5
Q ss_pred eeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++.+|...|..++.+.++.+++ |+|.|.+.. ..+.+-..+-.-++.++++ ++. ++.|
T Consensus 9 i~psi~a~d~~~l~~~i~~~~~~Gad~i~l~i-------~Dg~fv~~~~~~~~~~~~l----r~~-----------~~~~ 66 (228)
T 1h1y_A 9 IAPSMLSSDFANLAAEADRMVRLGADWLHMDI-------MDGHFVPNLTIGAPVIQSL----RKH-----------TKAY 66 (228)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEE-------EBSSSSSCBCBCHHHHHHH----HTT-----------CCSE
T ss_pred EEEEeeeCCHHHHHHHHHHHHHcCCCEEEEEE-------ecCCcCcchhhCHHHHHHH----Hhh-----------cCCc
Confidence 5667888898888888888865 788755432 1111100111235555444 443 4456
Q ss_pred eEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 196 IGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 196 vsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+.+-+-+.+..++.+.+.+ |+|.|++|+-.
T Consensus 67 ~~v~lmv~d~~~~i~~~~~agad~v~vH~~~ 97 (228)
T 1h1y_A 67 LDCHLMVTNPSDYVEPLAKAGASGFTFHIEV 97 (228)
T ss_dssp EEEEEESSCGGGGHHHHHHHTCSEEEEEGGG
T ss_pred EEEEEEecCHHHHHHHHHHcCCCEEEECCCC
Confidence 6666666666778888888 99999999854
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=93.21 E-value=0.34 Score=42.36 Aligned_cols=105 Identities=12% Similarity=-0.098 Sum_probs=58.6
Q ss_pred hhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHc-cCCCEEEec-CCCchh---hhhcc----cc---cccccCCH
Q psy7344 100 WPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAE-PHCDGIDIN-IGCPQM---VAKRG----HY---GAYLQDDW 167 (240)
Q Consensus 100 ~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le-~~~d~Idin-~gCP~~---~~~~~----g~---G~~l~~~p 167 (240)
++.++.+.. + +.|++++..+.+ .+. +.++.++ .|+|+|.+. .|.... ...+. +. -..-...+
T Consensus 171 ~~~i~~vr~-~---~~Pv~vK~v~~g-~~~-e~a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~ 244 (332)
T 1vcf_A 171 VERLAELLP-L---PFPVMVKEVGHG-LSR-EAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTA 244 (332)
T ss_dssp HHHHHHHCS-C---SSCEEEECSSSC-CCH-HHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHH
T ss_pred HHHHHHHHc-C---CCCEEEEecCCC-CCH-HHHHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHH
Confidence 455555544 3 579999942222 112 2345554 489999983 222110 00010 00 00012445
Q ss_pred HHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 168 PLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 168 ~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
+.+.++.+++ .++||.+-..+.+..+.++++..|||++.+ ||-
T Consensus 245 ~~l~~v~~~~--------------~~ipvia~GGI~~~~d~~kal~~GAd~V~i-gr~ 287 (332)
T 1vcf_A 245 RAILEVREVL--------------PHLPLVASGGVYTGTDGAKALALGADLLAV-ARP 287 (332)
T ss_dssp HHHHHHHHHC--------------SSSCEEEESSCCSHHHHHHHHHHTCSEEEE-CGG
T ss_pred HHHHHHHHhc--------------CCCeEEEECCCCCHHHHHHHHHhCCChHhh-hHH
Confidence 6565555542 156788777788888888888779999998 774
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=93.16 E-value=0.14 Score=44.41 Aligned_cols=49 Identities=14% Similarity=0.045 Sum_probs=29.7
Q ss_pred ccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeec
Q psy7344 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMG 64 (240)
Q Consensus 9 ~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk 64 (240)
...+.|+|.|.+. ||+++..+...|+.++++++.+.++.. ..+.|+.++
T Consensus 36 ~~~~~Ga~~I~~l--~p~~~~~~~~~G~~~~~~~~~i~~I~~-----~~~iPv~~k 84 (305)
T 2nv1_A 36 IAEEAGAVAVMAL--ERVPADIRAAGGVARMADPTIVEEVMN-----AVSIPVMAK 84 (305)
T ss_dssp HHHHTTCSEEEEC--CC-------CCCCCCCCCHHHHHHHHH-----HCSSCEEEE
T ss_pred HHHHcCCCEEEEc--CCCcchhhhccCcccCCCHHHHHHHHH-----hCCCCEEec
Confidence 4456689999544 388888888888899999998776532 346887765
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.14 Score=42.85 Aligned_cols=83 Identities=22% Similarity=0.212 Sum_probs=58.8
Q ss_pred eeEEeecCCHHHHHHHHHHHccCCCE--EEecCCC--chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEPHCDG--IDINIGC--PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~~~d~--Idin~gC--P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
+..+|..-|...+.+..+.++.++|. +|+=-|. |+. .+ -++ +++++++. +
T Consensus 3 i~pSila~D~~~l~~~i~~~~~gad~lHvDvmDG~fvpn~-----t~------G~~----~v~~lr~~-----------~ 56 (231)
T 3ctl_A 3 ISPSLMCMDLLKFKEQIEFIDSHADYFHIDIMDGHFVPNL-----TL------SPF----FVSQVKKL-----------A 56 (231)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHTTCSCEEEEEECSSSSSCC-----CB------CHH----HHHHHHTT-----------C
T ss_pred EEeehhhCChhhHHHHHHHHHcCCCEEEEEEEeCccCccc-----hh------cHH----HHHHHHhc-----------c
Confidence 34567778888888888888557775 5654442 321 11 233 56666665 5
Q ss_pred CeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 193 DINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 193 ~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+.|+-+-+.+.+...+.+.+.+ |+|.+|+|.=.
T Consensus 57 ~~~~dvhLmv~dp~~~i~~~~~aGAd~itvh~Ea 90 (231)
T 3ctl_A 57 TKPLDCHLMVTRPQDYIAQLARAGADFITLHPET 90 (231)
T ss_dssp CSCEEEEEESSCGGGTHHHHHHHTCSEEEECGGG
T ss_pred CCcEEEEEEecCHHHHHHHHHHcCCCEEEECccc
Confidence 7788888888787888899999 99999999754
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=93.10 E-value=0.19 Score=40.54 Aligned_cols=82 Identities=13% Similarity=0.010 Sum_probs=51.9
Q ss_pred eeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC-Cee
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN-DIN 195 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~-~~p 195 (240)
+++.+...+.++..+.++.+..+++.|+++.+ +..+ .| ++.+ +.+++. . +.|
T Consensus 3 li~a~d~~~~~~~~~~~~~~~~~v~~iev~~~--~~~~----~g------~~~i----~~l~~~-----------~~~~~ 55 (207)
T 3ajx_A 3 LQVAIDLLSTEAALELAGKVAEYVDIIELGTP--LIKA----EG------LSVI----TAVKKA-----------HPDKI 55 (207)
T ss_dssp EEEEECCSCHHHHHHHHHHHGGGCSEEEECHH--HHHH----HC------THHH----HHHHHH-----------STTSE
T ss_pred EEEEeCCCCHHHHHHHHHHhhccCCEEEECcH--HHHh----hC------HHHH----HHHHHh-----------CCCCe
Confidence 44455456788888888888668899999554 2211 11 3344 444443 3 567
Q ss_pred eEEeeehhc-HHHHHHHHhC-CCCeEEEeccc
Q psy7344 196 IGCPQMVAK-RGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 196 vsvK~r~~~-~~~~~~~l~~-G~~~itih~R~ 225 (240)
+.+-+.+.+ ...+++.+.+ |+|++++|.=.
T Consensus 56 i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~~ 87 (207)
T 3ajx_A 56 VFADMKTMDAGELEADIAFKAGADLVTVLGSA 87 (207)
T ss_dssp EEEEEEECSCHHHHHHHHHHTTCSEEEEETTS
T ss_pred EEEEEEecCccHHHHHHHHhCCCCEEEEeccC
Confidence 775333334 4567888888 99999999743
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=93.09 E-value=0.2 Score=40.39 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=31.6
Q ss_pred CceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCc
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCP 150 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP 150 (240)
.|+++.+.+.|.+++.+.++.+.+ |++.|+++.+||
T Consensus 10 ~~~i~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~~ 46 (205)
T 1wa3_A 10 HKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVP 46 (205)
T ss_dssp HCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTST
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCh
Confidence 579999999999999999998866 799999988865
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=93.00 E-value=0.38 Score=43.07 Aligned_cols=80 Identities=8% Similarity=-0.099 Sum_probs=59.4
Q ss_pred CceeEEe-e-cCCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 115 CGHSLMF-C-GNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 115 ~pvivqi-~-g~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
.|+...+ . ..+++++.+.++.+ +.|++.+.++.|| +++.-.++++++++++ +
T Consensus 139 v~~y~~~~~~~~~~e~~~~~a~~~~~~G~~~iKiKvG~----------------~~~~d~~~v~avR~a~---------g 193 (389)
T 3ozy_A 139 VRAYASSIYWDLTPDQAADELAGWVEQGFTAAKLKVGR----------------APRKDAANLRAMRQRV---------G 193 (389)
T ss_dssp EEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHH---------C
T ss_pred eeeEEecCCCCCCHHHHHHHHHHHHHCCCCEEeeccCC----------------CHHHHHHHHHHHHHHc---------C
Confidence 5666665 4 57899888877765 5699999999885 4556667778887762 1
Q ss_pred CCeeeEEeee----hhcHHHHHHHHhC-CCCeE
Q psy7344 192 NDINIGCPQM----VAKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 192 ~~~pvsvK~r----~~~~~~~~~~l~~-G~~~i 219 (240)
.++++.++.. .++..++++.|++ |+++|
T Consensus 194 ~d~~l~vDan~~~~~~~A~~~~~~l~~~~i~~i 226 (389)
T 3ozy_A 194 ADVEILVDANQSLGRHDALAMLRILDEAGCYWF 226 (389)
T ss_dssp TTSEEEEECTTCCCHHHHHHHHHHHHHTTCSEE
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHHhcCCCEE
Confidence 3567777765 3567889999999 99988
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=92.97 E-value=0.89 Score=39.25 Aligned_cols=164 Identities=8% Similarity=0.004 Sum_probs=85.6
Q ss_pred hccCCCcccCCCchhHHHHHHHhhcccCCCceeecc-----cccccCCCccccc---------cCchhhhhhhhccccee
Q psy7344 30 KRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGP-----LFIAEPHCDGIDI---------NIGCPQMVAKRGHYGAY 95 (240)
Q Consensus 30 ~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~-----~~~lap~~~~~dl---------~~gC~~~i~~~g~~ga~ 95 (240)
+-.+-|+-.+....-+..++..++ +...-|...+. ..-++.+.|.+-| .--|-. +...++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~la~~IDhTlL~p~~T~~dI~~lc~e--A~~~g~aa- 90 (288)
T 3oa3_A 15 QTQGPGSMSSLNNEEWDLLISGKK-ATLQYPIPLLCYPAPEVVSIAQIIDHTQLSLSATGSQIDVLCAE--AKEYGFAT- 90 (288)
T ss_dssp -------CTTCCHHHHHHHHHHHH-TTSCSSCCCSCSCCCCGGGGGGGEEEECCCTTCCHHHHHHHHHH--HHHHTCSE-
T ss_pred cccCCCCCCCCCcHHHHHHHHHHH-HhcCCccccccCCCCCHHHHHHhcCcccCCCCCCHHHHHHHHHH--HHhcCCcE-
Confidence 445678888888888888888887 23321333321 1223444444422 112212 12222333
Q ss_pred eeCChhhHHHhhhcccCCCCceeEEee---cC-CHH-HHHHHHHHHccCCCEEE--ecCCCchhhhhcccccccccCCHH
Q psy7344 96 LQDDWPLLTELGFKTRSHMCGHSLMFC---GN-DSK-NLTEAAKLAEPHCDGID--INIGCPQMVAKRGHYGAYLQDDWP 168 (240)
Q Consensus 96 l~~d~eli~~i~~~~~~~~~pvivqi~---g~-d~~-~~~~aa~~le~~~d~Id--in~gCP~~~~~~~g~G~~l~~~p~ 168 (240)
...+|.++......+...+.++...+. |. ..+ ...++...++.|+|.|| ||.| +..-.+|+
T Consensus 91 VCV~P~~V~~a~~~L~~s~V~V~tVigFP~G~~~~~~Kv~Ea~~Ai~~GAdEIDmVINig------------~lk~g~~~ 158 (288)
T 3oa3_A 91 VCVRPDYVSRAVQYLQGTQVGVTCVIGFHEGTYSTDQKVSEAKRAMQNGASELDMVMNYP------------WLSEKRYT 158 (288)
T ss_dssp EEECGGGHHHHHHHTTTSSCEEEEEESTTTSCSCHHHHHHHHHHHHHTTCSEEEEECCHH------------HHHTTCHH
T ss_pred EEECHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEeehh------------hhcCCcHH
Confidence 223477777665555333344433332 22 222 34456666788999999 7766 11235888
Q ss_pred HHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh-------hcHHHHHHHHhC-CCCeEEE
Q psy7344 169 LLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV-------AKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 169 ~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~-------~~~~~~~~~l~~-G~~~iti 221 (240)
.+.+-++.+++. ..-| .+|+-+ +.....++...+ |+|+|--
T Consensus 159 ~v~~eI~~V~~a-----------~~~~-~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKT 207 (288)
T 3oa3_A 159 DVFQDIRAVRLA-----------AKDA-ILKVILETSQLTADEIIAGCVLSSLAGADYVKT 207 (288)
T ss_dssp HHHHHHHHHHHH-----------TTTS-EEEEECCGGGCCHHHHHHHHHHHHHTTCSEEEC
T ss_pred HHHHHHHHHHHH-----------hcCC-CceEEEECCCCCHHHHHHHHHHHHHcCCCEEEc
Confidence 888888888876 2223 255542 234456777778 9999854
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=92.80 E-value=0.21 Score=40.64 Aligned_cols=85 Identities=13% Similarity=0.161 Sum_probs=53.3
Q ss_pred eeEEeecCCHHHHHHHHHHHcc-CCCEEEecC--CCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCC
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEP-HCDGIDINI--GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGND 193 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~-~~d~Idin~--gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~ 193 (240)
+...|...|..++.+.++.+++ |+|.+.+-. |. +-..+...++.++++.+. ++
T Consensus 6 ~~~~i~a~D~~~~~~~~~~~~~~G~~~i~~~~~dg~---------~~~~~~~g~~~i~~i~~~---------------~~ 61 (220)
T 2fli_A 6 IAPSILAADYANFASELARIEETDAEYVHIDIMDGQ---------FVPNISFGADVVASMRKH---------------SK 61 (220)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSS---------SSSCBCBCHHHHHHHHTT---------------CC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHcCCCEEEEEeecCC---------CCCccccCHHHHHHHHHh---------------CC
Confidence 3445667899888888888865 677754432 31 001122236766665542 34
Q ss_pred eeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 194 INIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 194 ~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.|+.+-+-+.+..++.+.+.+ |+|.+++|+-.
T Consensus 62 ~~~~v~l~v~d~~~~i~~~~~~gad~v~vh~~~ 94 (220)
T 2fli_A 62 LVFDCHLMVVDPERYVEAFAQAGADIMTIHTES 94 (220)
T ss_dssp SEEEEEEESSSGGGGHHHHHHHTCSEEEEEGGG
T ss_pred CCEEEEEeecCHHHHHHHHHHcCCCEEEEccCc
Confidence 466655555555556688888 99999999854
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=92.56 E-value=0.67 Score=40.14 Aligned_cols=102 Identities=10% Similarity=-0.093 Sum_probs=59.5
Q ss_pred CCceeEEee-c-CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccc-cccccCCHHHHHHHHHHhhhccccccCCCC
Q psy7344 114 MCGHSLMFC-G-NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHY-GAYLQDDWPLLTNLVYSPNMVHFVIAEPHC 189 (240)
Q Consensus 114 ~~pvivqi~-g-~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~-G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~ 189 (240)
+.|+++-+- | +++....+.++.+++ |+.+|.|-=+-..++.-|-+. +..|..-.+.+.+|..+.....
T Consensus 79 ~~PviaD~d~Gyg~~~~v~~~v~~l~~aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~-------- 150 (295)
T 1s2w_A 79 DVPILLDADTGYGNFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQT-------- 150 (295)
T ss_dssp SSCEEEECCSSCSSHHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCS--------
T ss_pred CCCEEecCCCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCccccccCCCCCcccCHHHHHHHHHHHHHhcc--------
Confidence 578888763 2 467777777777654 899999876643333323221 2334443444555554443330
Q ss_pred CCCCeeeEEeee-h------hcHHHHHHHHhC-CCCeEEEecc
Q psy7344 190 DGNDINIGCPQM-V------AKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 190 ~~~~~pvsvK~r-~------~~~~~~~~~l~~-G~~~itih~R 224 (240)
+.++-|..+.. . +.+++-++++++ |||.|.+|+.
T Consensus 151 -~~~~~i~aRtda~~a~~g~~~ai~Ra~ay~eAGAd~i~~e~~ 192 (295)
T 1s2w_A 151 -DPDFCIVARVEAFIAGWGLDEALKRAEAYRNAGADAILMHSK 192 (295)
T ss_dssp -STTCEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred -cCCcEEEEeehHHhccccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 12344555544 2 567778888999 9999999974
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=92.53 E-value=0.77 Score=41.49 Aligned_cols=64 Identities=14% Similarity=-0.016 Sum_probs=41.9
Q ss_pred HHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHH
Q psy7344 131 EAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYG 209 (240)
Q Consensus 131 ~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~ 209 (240)
+.++.+ +.++|.|.++.+- .+++.+.++++.+++. .++||.++.- .+.+.+
T Consensus 147 e~~~~lveaGvdvIvldta~---------------G~~~~~~e~I~~ik~~-----------~~i~Vi~g~V--~t~e~A 198 (400)
T 3ffs_A 147 ERAKLLVEAGVDVIVLDSAH---------------GHSLNIIRTLKEIKSK-----------MNIDVIVGNV--VTEEAT 198 (400)
T ss_dssp HHHHHHHHHTCSEEEECCSC---------------CSBHHHHHHHHHHHTT-----------CCCEEEEEEE--CSHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCC---------------CCcccHHHHHHHHHhc-----------CCCeEEEeec--CCHHHH
Confidence 334443 5578888775441 1445555677777665 5678887532 346778
Q ss_pred HHHhC-CCCeEEEe
Q psy7344 210 AYLQD-DWPLLTEL 222 (240)
Q Consensus 210 ~~l~~-G~~~itih 222 (240)
+.+++ |+|+|.++
T Consensus 199 ~~a~~aGAD~I~vG 212 (400)
T 3ffs_A 199 KELIENGADGIKVG 212 (400)
T ss_dssp HHHHHTTCSEEEEC
T ss_pred HHHHHcCCCEEEEe
Confidence 88888 99999993
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=92.33 E-value=0.56 Score=41.12 Aligned_cols=103 Identities=5% Similarity=-0.127 Sum_probs=61.9
Q ss_pred CCceeEEee-c-CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCC
Q psy7344 114 MCGHSLMFC-G-NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCD 190 (240)
Q Consensus 114 ~~pvivqi~-g-~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~ 190 (240)
+.|+++-+- | ++++...+.++.+++ |+.+|.|-=+-..++.-|- .|..|..-.+.+.+|..+.....
T Consensus 101 ~~PviaD~d~Gyg~~~~v~~tv~~l~~aGaagv~iED~~~~k~cgH~-~gk~L~p~~e~~~rI~Aa~~A~~--------- 170 (318)
T 1zlp_A 101 NLCVVVDGDTGGGGPLNVQRFIRELISAGAKGVFLEDQVWPKKCGHM-RGKAVVPAEEHALKIAAAREAIG--------- 170 (318)
T ss_dssp SSEEEEECTTCSSSHHHHHHHHHHHHHTTCCEEEEECBCSSCCCSSS-SCCCBCCHHHHHHHHHHHHHHHT---------
T ss_pred CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCccccCC-CCCccCCHHHHHHHHHHHHHhcc---------
Confidence 478888873 2 388888887777755 8999988766322222222 13334444444444444433330
Q ss_pred CCCeeeEEeee------hhcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 191 GNDINIGCPQM------VAKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 191 ~~~~pvsvK~r------~~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
..++-|..+.. ++..++-++++++ |||.|.+++...
T Consensus 171 ~~~~~I~ARtda~a~~gl~~ai~Ra~Ay~eAGAd~i~~e~~~~ 213 (318)
T 1zlp_A 171 DSDFFLVARTDARAPHGLEEGIRRANLYKEAGADATFVEAPAN 213 (318)
T ss_dssp TSCCEEEEEECTHHHHHHHHHHHHHHHHHHTTCSEEEECCCCS
T ss_pred cCCcEEEEeeHHhhhcCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 02334444443 2467778888899 999999998653
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=92.29 E-value=0.34 Score=45.00 Aligned_cols=68 Identities=10% Similarity=-0.042 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC-CeeeEEeeehhc
Q psy7344 126 SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN-DINIGCPQMVAK 204 (240)
Q Consensus 126 ~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~-~~pvsvK~r~~~ 204 (240)
+.....+.++++.++|+|.||.+|. ++....++++++++. . ++||.+|.- .
T Consensus 254 ~~~~~~a~~~~~aG~d~v~i~~~~G---------------~~~~~~~~i~~i~~~-----------~~~~pvi~~~v--~ 305 (514)
T 1jcn_A 254 EDDKYRLDLLTQAGVDVIVLDSSQG---------------NSVYQIAMVHYIKQK-----------YPHLQVIGGNV--V 305 (514)
T ss_dssp TTHHHHHHHHHHTTCSEEEECCSCC---------------CSHHHHHHHHHHHHH-----------CTTCEEEEEEE--C
T ss_pred hhhHHHHHHHHHcCCCEEEeeccCC---------------cchhHHHHHHHHHHh-----------CCCCceEeccc--c
Confidence 3444445555566899999988851 233444666666666 4 678888632 3
Q ss_pred HHHHHHHHhC-CCCeEEE
Q psy7344 205 RGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 205 ~~~~~~~l~~-G~~~iti 221 (240)
+.+.++.+++ |+|+|.+
T Consensus 306 t~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 306 TAAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp SHHHHHHHHHHTCSEEEE
T ss_pred hHHHHHHHHHcCCCEEEE
Confidence 4567899999 9999988
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=92.21 E-value=0.3 Score=43.32 Aligned_cols=71 Identities=15% Similarity=0.094 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
+++++.+.++.+ +.|++.|.|+.||+ +++...++++++++++ +.++++.++..
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~---------G~d~~l~vDan~~ 201 (371)
T 2ovl_A 146 PVADLKTQADRFLAGGFRAIKMKVGRP---------------DLKEDVDRVSALREHL---------GDSFPLMVDANMK 201 (371)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCCS---------------SHHHHHHHHHHHHHHH---------CTTSCEEEECTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCC---------------CHHHHHHHHHHHHHHh---------CCCCeEEEECCCC
Confidence 788887766655 66899999999863 4556667778887762 13567777766
Q ss_pred --hhcHHHHHHHHhC-CCCeE
Q psy7344 202 --VAKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 202 --~~~~~~~~~~l~~-G~~~i 219 (240)
.++..++++.|++ |+++|
T Consensus 202 ~~~~~a~~~~~~l~~~~i~~i 222 (371)
T 2ovl_A 202 WTVDGAIRAARALAPFDLHWI 222 (371)
T ss_dssp SCHHHHHHHHHHHGGGCCSEE
T ss_pred CCHHHHHHHHHHHHhcCCCEE
Confidence 3567899999999 99987
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=92.17 E-value=0.26 Score=44.09 Aligned_cols=80 Identities=14% Similarity=-0.056 Sum_probs=56.7
Q ss_pred CceeEEee-cCCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 115 CGHSLMFC-GNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 115 ~pvivqi~-g~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
.|+...+. .++++++.+.++.+ +.|+++|.|+.|| .+++. .++++++++++ +.
T Consensus 153 vp~~~~~g~~~~~e~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~-~e~v~avr~a~---------g~ 207 (388)
T 2nql_A 153 FPAYVSGLPERTLKARGELAKYWQDRGFNAFKFATPV---------------ADDGP-AAEIANLRQVL---------GP 207 (388)
T ss_dssp EEEEEECCCCSSHHHHHHHHHHHHHTTCCEEEEEGGG---------------CTTCH-HHHHHHHHHHH---------CT
T ss_pred eEeeEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC---------------CChHH-HHHHHHHHHHh---------CC
Confidence 46555443 35888888776665 5689999998774 13445 57777777762 13
Q ss_pred CeeeEEeee----hhcHHHHHHHHhC-CCCeE
Q psy7344 193 DINIGCPQM----VAKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 193 ~~pvsvK~r----~~~~~~~~~~l~~-G~~~i 219 (240)
++++.++.. .++..++++.|++ |+++|
T Consensus 208 d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i 239 (388)
T 2nql_A 208 QAKIAADMHWNQTPERALELIAEMQPFDPWFA 239 (388)
T ss_dssp TSEEEEECCSCSCHHHHHHHHHHHGGGCCSCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhhcCCCEE
Confidence 678887766 3567899999999 99987
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=92.15 E-value=0.47 Score=38.24 Aligned_cols=76 Identities=12% Similarity=0.028 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehh
Q psy7344 124 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVA 203 (240)
Q Consensus 124 ~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~ 203 (240)
.+.++..+.++.+..++|.||++. |+... . | ++.+ +.+++.. .++|+.+..-+.
T Consensus 10 ~~~~~~~~~~~~~~~~~diie~G~--p~~~~--~--g------~~~i----~~ir~~~----------~~~~i~~~~~~~ 63 (211)
T 3f4w_A 10 LTLPEAMVFMDKVVDDVDIIEVGT--PFLIR--E--G------VNAI----KAIKEKY----------PHKEVLADAKIM 63 (211)
T ss_dssp CCHHHHHHHHHHHGGGCSEEEECH--HHHHH--H--T------THHH----HHHHHHC----------TTSEEEEEEEEC
T ss_pred CCHHHHHHHHHHhhcCccEEEeCc--HHHHh--c--c------HHHH----HHHHHhC----------CCCEEEEEEEec
Confidence 577788888887766789999976 65321 1 1 3444 4444431 356776655543
Q ss_pred c-HHHHHHHHhC-CCCeEEEeccc
Q psy7344 204 K-RGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 204 ~-~~~~~~~l~~-G~~~itih~R~ 225 (240)
+ ...+++.+.+ |+|.+++|.-.
T Consensus 64 ~~~~~~~~~~~~~Gad~v~v~~~~ 87 (211)
T 3f4w_A 64 DGGHFESQLLFDAGADYVTVLGVT 87 (211)
T ss_dssp SCHHHHHHHHHHTTCSEEEEETTS
T ss_pred cchHHHHHHHHhcCCCEEEEeCCC
Confidence 3 3345888888 99999999865
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=91.92 E-value=0.57 Score=41.84 Aligned_cols=105 Identities=12% Similarity=0.017 Sum_probs=58.1
Q ss_pred hhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecC-CCchhh-h--hccc--------ccccccCCH
Q psy7344 100 WPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINI-GCPQMV-A--KRGH--------YGAYLQDDW 167 (240)
Q Consensus 100 ~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~-gCP~~~-~--~~~g--------~G~~l~~~p 167 (240)
++.|+.++..+ ..||+++..|++. +...+.+..+.|+|+|++.- |-.... . .+.. .+. ...+|
T Consensus 176 ~~~i~~i~~~~---~vPVivK~vG~g~-s~~~A~~l~~aGad~I~V~g~GGt~~~~iE~~R~~~~~~~~~~~~~-~~~~~ 250 (368)
T 3vkj_A 176 LEKLRDISKEL---SVPIIVKESGNGI-SMETAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAK-NFLDW 250 (368)
T ss_dssp HHHHHHHHTTC---SSCEEEECSSSCC-CHHHHHHHHHTTCCEEECCCBTSBCHHHHHHHHHHHTTCTHHHHHH-HTTTC
T ss_pred HHHHHHHHHHc---CCCEEEEeCCCCC-CHHHHHHHHhCCCCEEEEeCCCCCcccchhhhhcccccccchhhcc-ccccc
Confidence 44555555443 5799999654332 12233334455999999832 211000 0 0000 001 12222
Q ss_pred -----HHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEecc
Q psy7344 168 -----PLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224 (240)
Q Consensus 168 -----~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R 224 (240)
..+.++.+++ .++||.+-..+.+..+.++++..||+++.+ ||
T Consensus 251 g~pt~~~l~~v~~~~--------------~~ipvia~GGI~~~~d~~kal~lGA~~v~i-g~ 297 (368)
T 3vkj_A 251 GVPTAASIMEVRYSV--------------PDSFLVGSGGIRSGLDAAKAIALGADIAGM-AL 297 (368)
T ss_dssp SCBHHHHHHHHHHHS--------------TTCEEEEESSCCSHHHHHHHHHHTCSEEEE-CH
T ss_pred cccHHHHHHHHHHHc--------------CCCcEEEECCCCCHHHHHHHHHcCCCEEEE-cH
Confidence 3444444332 246888877788888899888889999998 66
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=91.89 E-value=0.36 Score=42.66 Aligned_cols=81 Identities=14% Similarity=0.087 Sum_probs=58.4
Q ss_pred CceeEEeecCCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCC
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGND 193 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~ 193 (240)
.|+...+.+++++++.+.++.+ +.|++.|.|+.|. +++...++++++++++ +.+
T Consensus 131 v~~~~~i~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~e~v~avr~a~---------g~~ 185 (369)
T 2p8b_A 131 FPVTHVLSIADPENMAEEAASMIQKGYQSFKMKVGT----------------NVKEDVKRIEAVRERV---------GND 185 (369)
T ss_dssp EECCEEECSCCHHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHHHHH---------CTT
T ss_pred eeeeEEecCCChHHHHHHHHHHHHcCcCEEEEEeCC----------------CHHHHHHHHHHHHHHh---------CCC
Confidence 4555566667898887766655 6689999998772 4566667788887762 135
Q ss_pred eeeEEeee----hhcHH-HHHHHHhC-CCCeEE
Q psy7344 194 INIGCPQM----VAKRG-HYGAYLQD-DWPLLT 220 (240)
Q Consensus 194 ~pvsvK~r----~~~~~-~~~~~l~~-G~~~it 220 (240)
+++.++.. .++.. ++++.|++ |+++|-
T Consensus 186 ~~l~vDan~~~~~~~a~~~~~~~l~~~~i~~iE 218 (369)
T 2p8b_A 186 IAIRVDVNQGWKNSANTLTALRSLGHLNIDWIE 218 (369)
T ss_dssp SEEEEECTTTTBSHHHHHHHHHTSTTSCCSCEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 67777665 35677 89999999 999873
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=91.88 E-value=0.14 Score=47.61 Aligned_cols=78 Identities=9% Similarity=0.004 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhc
Q psy7344 125 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAK 204 (240)
Q Consensus 125 d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~ 204 (240)
..+....+.++++.|+|.|.||..||+ ...+.++++.+++.. .++||.+..- .
T Consensus 229 ~~d~~~~a~~l~~aG~d~I~id~a~g~---------------~~~~~~~i~~ir~~~----------p~~~Vi~g~v--~ 281 (496)
T 4fxs_A 229 APGNEERVKALVEAGVDVLLIDSSHGH---------------SEGVLQRIRETRAAY----------PHLEIIGGNV--A 281 (496)
T ss_dssp SSCCHHHHHHHHHTTCSEEEEECSCTT---------------SHHHHHHHHHHHHHC----------TTCCEEEEEE--C
T ss_pred ccchHHHHHHHHhccCceEEecccccc---------------chHHHHHHHHHHHHC----------CCceEEEccc--C
Confidence 344445555566779999999999752 234446666666651 2568877432 2
Q ss_pred HHHHHHHHhC-CCCeEEE------eccccccc
Q psy7344 205 RGHYGAYLQD-DWPLLTE------LGKMAMLV 229 (240)
Q Consensus 205 ~~~~~~~l~~-G~~~iti------h~R~~~~~ 229 (240)
+.+.++.+.+ |+|+|.+ |+.|+...
T Consensus 282 t~e~a~~l~~aGaD~I~Vg~g~Gs~~~tr~~~ 313 (496)
T 4fxs_A 282 TAEGARALIEAGVSAVKVGIGPGSICTTRIVT 313 (496)
T ss_dssp SHHHHHHHHHHTCSEEEECSSCCTTBCHHHHH
T ss_pred cHHHHHHHHHhCCCEEEECCCCCcCccccccc
Confidence 3467888899 9999998 56665543
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=91.48 E-value=0.63 Score=41.59 Aligned_cols=106 Identities=12% Similarity=-0.046 Sum_probs=62.2
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHh-
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSP- 177 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~- 177 (240)
+|+.+.++.... ..|+++. ...++ .++.++++.|+|+|.++.|- +....-.+.| ...++.+.++.++.
T Consensus 199 ~~~~i~~l~~~~---~~pvi~g-gi~t~---e~a~~~~~~Gad~i~vg~Gg-~~~~~~~~~g---~~~~~~l~~v~~~~~ 267 (393)
T 2qr6_A 199 EALNLKEFIGSL---DVPVIAG-GVNDY---TTALHMMRTGAVGIIVGGGE-NTNSLALGME---VSMATAIADVAAARR 267 (393)
T ss_dssp ---CHHHHHHHC---SSCEEEE-CCCSH---HHHHHHHTTTCSEEEESCCS-CCHHHHTSCC---CCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhc---CCCEEEC-CcCCH---HHHHHHHHcCCCEEEECCCc-ccccccCCCC---CChHHHHHHHHHHHH
Confidence 455566665543 4788773 11233 34555556799999997762 2100001111 35677777777662
Q ss_pred ---hhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 178 ---NMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 178 ---~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
.+. + +.++||.+-..+.+..+.++++..||+++.+ ||.
T Consensus 268 ~~~~~~------~---~~~ipvia~GGI~~~~dv~kalalGA~~V~i-G~~ 308 (393)
T 2qr6_A 268 DYLDET------G---GRYVHIIADGSIENSGDVVKAIACGADAVVL-GSP 308 (393)
T ss_dssp HHHHHH------T---SCCCEEEECSSCCSHHHHHHHHHHTCSEEEE-CGG
T ss_pred HhHhhc------C---CcceEEEEECCCCCHHHHHHHHHcCCCEEEE-CHH
Confidence 211 0 0126777777777788888888779999999 776
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=91.42 E-value=2 Score=37.87 Aligned_cols=128 Identities=13% Similarity=0.082 Sum_probs=69.4
Q ss_pred eecccccccCCCccccccCchhhhhhhhcccceeee-CChhhHHHhhhcccCC-CCceeEEeecCCHHHHHHHHHHHcc-
Q psy7344 62 FMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQ-DDWPLLTELGFKTRSH-MCGHSLMFCGNDSKNLTEAAKLAEP- 138 (240)
Q Consensus 62 ~vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~-~d~eli~~i~~~~~~~-~~pvivqi~g~d~~~~~~aa~~le~- 138 (240)
.++.+.+.+||....+..+ ...++..|+.|.... ...+........ .+. ..++.+.+ +.+.+....+..+++.
T Consensus 55 ~l~~PIi~ApM~~~~~~~l--A~Ava~~Gglg~i~~~~s~e~~~~~i~~-~p~~l~~v~~~~-g~~~~~~~~~~~l~~~~ 130 (351)
T 2c6q_A 55 YSGVPIIAANMDTVGTFEM--AKVLCKFSLFTAVHKHYSLVQWQEFAGQ-NPDCLEHLAASS-GTGSSDFEQLEQILEAI 130 (351)
T ss_dssp EEECCEEECSSTTTSCHHH--HHHHHHTTCEEECCTTCCHHHHHHHHHH-CGGGCTTEEEEE-CSSHHHHHHHHHHHHHC
T ss_pred cccCCEEECCCCCCCcHHH--HHHHHHCCCEEEEcCCCCHHHHHHHHhh-CchhhheeEeec-CCChHHHHHHHHHHhcc
Confidence 3555678889987665444 244555554333221 112222221111 111 12355554 3345555555556664
Q ss_pred -CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC-CeeeEEeeehhcHHHHHHHHhC-C
Q psy7344 139 -HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN-DINIGCPQMVAKRGHYGAYLQD-D 215 (240)
Q Consensus 139 -~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~-~~pvsvK~r~~~~~~~~~~l~~-G 215 (240)
+++.|.+... . | ++..+.+.++++++. . ++||.+|.-. +.+.++.+.+ |
T Consensus 131 ~g~~~i~i~~~--------~--g-----~~~~~~~~i~~lr~~-----------~~~~~vi~g~v~--t~e~A~~a~~aG 182 (351)
T 2c6q_A 131 PQVKYICLDVA--------N--G-----YSEHFVEFVKDVRKR-----------FPQHTIMAGNVV--TGEMVEELILSG 182 (351)
T ss_dssp TTCCEEEEECS--------C--T-----TBHHHHHHHHHHHHH-----------CTTSEEEEEEEC--SHHHHHHHHHTT
T ss_pred CCCCEEEEEec--------C--C-----CcHHHHHHHHHHHHh-----------cCCCeEEEEeCC--CHHHHHHHHHhC
Confidence 7888766432 0 1 333444666676666 4 6788877432 3567788888 9
Q ss_pred CCeEEE
Q psy7344 216 WPLLTE 221 (240)
Q Consensus 216 ~~~iti 221 (240)
+|+|.+
T Consensus 183 aD~I~v 188 (351)
T 2c6q_A 183 ADIIKV 188 (351)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 999977
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=91.40 E-value=0.95 Score=40.10 Aligned_cols=78 Identities=13% Similarity=0.120 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee-
Q psy7344 124 NDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM- 201 (240)
Q Consensus 124 ~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r- 201 (240)
.+++++.+.++.+ +.|+++|.|..|++. ++ .+.+++...++++++++++ +.++++.++..
T Consensus 148 ~~~e~~~~~a~~~~~~Gf~~iKik~g~~~-------~~--~~~~~~~~~e~v~avr~a~---------g~d~~l~vDan~ 209 (382)
T 1rvk_A 148 ATPEDYGRFAETLVKRGYKGIKLHTWMPP-------VS--WAPDVKMDLKACAAVREAV---------GPDIRLMIDAFH 209 (382)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEEECCCTT-------ST--TCCCHHHHHHHHHHHHHHH---------CTTSEEEEECCT
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCcCc-------cc--cccchHHHHHHHHHHHHHh---------CCCCeEEEECCC
Confidence 5788887776655 569999999999742 12 3458888888999998873 13677777765
Q ss_pred ---hhcHHHHHHHHhC-CCCeE
Q psy7344 202 ---VAKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 202 ---~~~~~~~~~~l~~-G~~~i 219 (240)
.++..++++.|++ |+++|
T Consensus 210 ~~~~~~a~~~~~~l~~~~i~~i 231 (382)
T 1rvk_A 210 WYSRTDALALGRGLEKLGFDWI 231 (382)
T ss_dssp TCCHHHHHHHHHHHHTTTCSEE
T ss_pred CCCHHHHHHHHHHHHhcCCCEE
Confidence 3567889999999 99987
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=91.21 E-value=1.1 Score=36.42 Aligned_cols=85 Identities=9% Similarity=0.006 Sum_probs=53.4
Q ss_pred ceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 116 GHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 116 pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++++.+--.+.++..+.++.++.++|.+++++ |.... . | ++.++++ ++.. .+..++
T Consensus 8 ~lilalD~~~~~~~~~~~~~~~~~vd~ie~g~--~~~~~--~--G------~~~i~~l----r~~~--------~~~~i~ 63 (218)
T 3jr2_A 8 MIQIALDQTNLTDAVAVASNVASYVDVIEVGT--ILAFA--E--G------MKAVSTL----RHNH--------PNHILV 63 (218)
T ss_dssp EEEEEECCSSHHHHHHHHHHHGGGCSEEEECH--HHHHH--H--T------THHHHHH----HHHC--------TTSEEE
T ss_pred CeEEEeCCCCHHHHHHHHHHhcCCceEEEeCc--HHHHh--c--C------HHHHHHH----HHhC--------CCCcEE
Confidence 35665545678888888887766899999875 22211 1 1 3444444 4331 002455
Q ss_pred eEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 196 IGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 196 vsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+-+|+. +....+++.+.+ |+|.|++|+=.
T Consensus 64 ld~~l~-d~p~~~~~~~~~aGad~i~vh~~~ 93 (218)
T 3jr2_A 64 CDMKTT-DGGAILSRMAFEAGADWITVSAAA 93 (218)
T ss_dssp EEEEEC-SCHHHHHHHHHHHTCSEEEEETTS
T ss_pred EEEeec-ccHHHHHHHHHhcCCCEEEEecCC
Confidence 667776 334457788889 99999999754
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=91.16 E-value=0.38 Score=40.04 Aligned_cols=100 Identities=9% Similarity=-0.028 Sum_probs=60.5
Q ss_pred eCChhhHHHhhhcccCCCCceeEEee---cC-CH---HHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHH
Q psy7344 97 QDDWPLLTELGFKTRSHMCGHSLMFC---GN-DS---KNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPL 169 (240)
Q Consensus 97 ~~d~eli~~i~~~~~~~~~pvivqi~---g~-d~---~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~ 169 (240)
...++.|+++...+ +.|++.... ++ +. .++.++.+.++.|+|.|-++..+ ..+|+.
T Consensus 55 ~~~~~~i~~ir~~v---~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGad~I~l~~~~--------------~~~p~~ 117 (229)
T 3q58_A 55 IEGIENLRTVRPHL---SVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDASF--------------RSRPVD 117 (229)
T ss_dssp EESHHHHHHHGGGC---CSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCS--------------SCCSSC
T ss_pred ECCHHHHHHHHHhc---CCCEEEEEeecCCCCceEeCccHHHHHHHHHcCCCEEEECccc--------------cCChHH
Confidence 34577788877654 478763321 11 11 12334444556699999887662 235566
Q ss_pred HHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEE--Eecccccc
Q psy7344 170 LTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLT--ELGKMAML 228 (240)
Q Consensus 170 i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~it--ih~R~~~~ 228 (240)
+.++++.+++. .+++.+.. .+.+.++.+++ |+|.|. +||+|...
T Consensus 118 l~~~i~~~~~~------------g~~v~~~v---~t~eea~~a~~~Gad~Ig~~~~g~t~~~ 164 (229)
T 3q58_A 118 IDSLLTRIRLH------------GLLAMADC---STVNEGISCHQKGIEFIGTTLSGYTGPI 164 (229)
T ss_dssp HHHHHHHHHHT------------TCEEEEEC---SSHHHHHHHHHTTCSEEECTTTTSSSSC
T ss_pred HHHHHHHHHHC------------CCEEEEec---CCHHHHHHHHhCCCCEEEecCccCCCCC
Confidence 77777777653 44565543 34556677778 999994 57777654
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=91.09 E-value=1.4 Score=38.04 Aligned_cols=101 Identities=9% Similarity=-0.127 Sum_probs=64.3
Q ss_pred CCceeEEee-c-CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCC
Q psy7344 114 MCGHSLMFC-G-NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCD 190 (240)
Q Consensus 114 ~~pvivqi~-g-~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~ 190 (240)
+.|+++-+- | +++++..+.++.+++ |+.+|.|-=+-..+.. ++.... +.+.+...+-+++++++- +
T Consensus 82 ~~PviaD~d~Gyg~~~~~~~~v~~l~~aGa~gv~iED~~~pKrc--gh~~gk-l~~~~e~~~~I~aa~~a~--~------ 150 (287)
T 3b8i_A 82 RLPVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLPAQF--GRKSTD-LICVEEGVGKIRAALEAR--V------ 150 (287)
T ss_dssp SSCEEEECTTCSSSHHHHHHHHHHHHHHTCSEEEEECBCCSCCT--TTCTTC-BCCHHHHHHHHHHHHHHC--C------
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEEcCCCCcccc--CCCCCC-ccCHHHHHHHHHHHHHcC--C------
Confidence 568888763 2 488888887777765 8999998766322221 222233 566666656666666541 0
Q ss_pred CCCeeeEEeee-----hhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 191 GNDINIGCPQM-----VAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 191 ~~~~pvsvK~r-----~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+.++-|..+.. ++.+++-++++++ |||.|.+++-.
T Consensus 151 ~~~~~i~aRtdaa~~gl~~ai~Ra~ay~eAGAd~i~~e~~~ 191 (287)
T 3b8i_A 151 DPALTIIARTNAELIDVDAVIQRTLAYQEAGADGICLVGVR 191 (287)
T ss_dssp STTSEEEEEEETTTSCHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred CCCcEEEEechhhhcCHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 12344444443 2467788888999 99999999865
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=90.99 E-value=0.79 Score=40.45 Aligned_cols=80 Identities=10% Similarity=0.056 Sum_probs=54.2
Q ss_pred ceeEEeecCCHHHHHHHHHH-Hc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCC
Q psy7344 116 GHSLMFCGNDSKNLTEAAKL-AE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGND 193 (240)
Q Consensus 116 pvivqi~g~d~~~~~~aa~~-le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~ 193 (240)
|+...+..++++++.+.++. ++ .|++.|.|+.|++ +++...++++++++++ +.+
T Consensus 133 ~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~---------g~~ 188 (370)
T 1nu5_A 133 PIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGAR---------------TPAQDLEHIRSIVKAV---------GDR 188 (370)
T ss_dssp EBCEEECSSCHHHHHHHHHHHHHTTSCSEEEEECSSS---------------CHHHHHHHHHHHHHHH---------GGG
T ss_pred EeeEEecCCCHHHHHHHHHHHHHhCCccEEEEecCCC---------------ChHHHHHHHHHHHHhc---------CCC
Confidence 44434445688888776655 46 7899999998863 3444456677777652 124
Q ss_pred eeeEEeee----hhcHHHHHHHHhC-CCCeE
Q psy7344 194 INIGCPQM----VAKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 194 ~pvsvK~r----~~~~~~~~~~l~~-G~~~i 219 (240)
+++.++.. .++..++++.|++ |+++|
T Consensus 189 ~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i 219 (370)
T 1nu5_A 189 ASVRVDVNQGWDEQTASIWIPRLEEAGVELV 219 (370)
T ss_dssp CEEEEECTTCCCHHHHHHHHHHHHHHTCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhcCcceE
Confidence 56666554 3567889999999 99987
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=90.96 E-value=1 Score=39.79 Aligned_cols=79 Identities=9% Similarity=-0.042 Sum_probs=58.1
Q ss_pred CceeEEeecCCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCC
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGND 193 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~ 193 (240)
.|+...+.+++++++.+.++.+ +.|++.|.|+.|. +++...++++++++++ +.+
T Consensus 136 vp~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~e~v~avr~a~---------g~~ 190 (371)
T 2ps2_A 136 LPLISSIYVGEPEDMRARVAKYRAKGYKGQSVKISG----------------EPVTDAKRITAALANQ---------QPD 190 (371)
T ss_dssp EEBEEEECSCCHHHHHHHHHHHHTTTCCEEEEECCS----------------CHHHHHHHHHHHTTTC---------CTT
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHhChheEEeecCC----------------CHHHHHHHHHHHHHhc---------CCC
Confidence 5666666667899888776665 6689999998772 4666678888888862 135
Q ss_pred eeeEEeee----hhcHHHHHHHH-hC-CCCeE
Q psy7344 194 INIGCPQM----VAKRGHYGAYL-QD-DWPLL 219 (240)
Q Consensus 194 ~pvsvK~r----~~~~~~~~~~l-~~-G~~~i 219 (240)
+++.++.. .++..++++.| ++ |+ +|
T Consensus 191 ~~l~vDan~~~~~~~a~~~~~~l~~~~~i-~i 221 (371)
T 2ps2_A 191 EFFIVDANGKLSVETALRLLRLLPHGLDF-AL 221 (371)
T ss_dssp CEEEEECTTBCCHHHHHHHHHHSCTTCCC-EE
T ss_pred CEEEEECCCCcCHHHHHHHHHHHHhhcCC-cC
Confidence 67777665 35678899999 88 98 65
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=90.79 E-value=0.39 Score=39.10 Aligned_cols=75 Identities=12% Similarity=-0.027 Sum_probs=48.4
Q ss_pred eeEEeecC----CHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 117 HSLMFCGN----DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 117 vivqi~g~----d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
|++|..++ +.+.+.+.++.+++ |++++.++ .++.++++.+.
T Consensus 9 ~~~q~~~~~p~~~~~~~~~~a~~~~~~Ga~~i~~~-------------------~~~~i~~i~~~--------------- 54 (223)
T 1y0e_A 9 VSCQALPDEPLHSSFIMSKMALAAYEGGAVGIRAN-------------------TKEDILAIKET--------------- 54 (223)
T ss_dssp EECCCCTTSTTCCHHHHHHHHHHHHHHTCSEEEEE-------------------SHHHHHHHHHH---------------
T ss_pred EEecCCCCCCCCCCccHHHHHHHHHHCCCeeeccC-------------------CHHHHHHHHHh---------------
Confidence 45566666 77888888888866 78888653 34555555543
Q ss_pred CCeeeEEeee---------hhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 192 NDINIGCPQM---------VAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 192 ~~~pvsvK~r---------~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+++|+....+ +....+.++.+.+ |+|.+++|...
T Consensus 55 ~~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~v~l~~~~ 98 (223)
T 1y0e_A 55 VDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATL 98 (223)
T ss_dssp CCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTCSEEEEECSC
T ss_pred cCCCEEeeeccCCCccccccCCcHHHHHHHHhCCCCEEEEeeec
Confidence 4556632111 2234556666777 99999999754
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=90.70 E-value=1.5 Score=38.16 Aligned_cols=102 Identities=9% Similarity=-0.142 Sum_probs=59.4
Q ss_pred CCceeEEee-c-CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCC
Q psy7344 114 MCGHSLMFC-G-NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCD 190 (240)
Q Consensus 114 ~~pvivqi~-g-~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~ 190 (240)
+.|+++-+- | +++....+.++.+++ |+.+|.|-=....+...|. .|..+..-.+.+.+|..+.... ..
T Consensus 80 ~~PviaD~d~Gyg~~~~v~~tv~~l~~aGaagv~iEDq~~~Krcgh~-~gk~l~~~~e~~~rI~Aa~~A~-~~------- 150 (302)
T 3fa4_A 80 STPVIADADTGYGGPIMVARTTEQYSRSGVAAFHIEDQVQTKRCGHL-AGKILVDTDTYVTRIRAAVQAR-QR------- 150 (302)
T ss_dssp TSCEEEECTTTTSSHHHHHHHHHHHHHTTCCEEEECSBCCC--------CCCBCCHHHHHHHHHHHHHHH-HH-------
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCcccCCC-CCCeecCHHHHHHHHHHHHHHH-Hh-------
Confidence 578888873 3 478887888887755 8999988655322211111 2334444344555554443322 00
Q ss_pred CCCeeeEEeee--------hhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 191 GNDINIGCPQM--------VAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 191 ~~~~pvsvK~r--------~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.+.++.+--| ++++++-+++..+ |+|.|-+|+-+
T Consensus 151 -~~~d~~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~g~~ 193 (302)
T 3fa4_A 151 -IGSDIVVIARTDSLQTHGYEESVARLRAARDAGADVGFLEGIT 193 (302)
T ss_dssp -HTCCCEEEEEECCHHHHCHHHHHHHHHHHHTTTCSEEEETTCC
T ss_pred -cCCCEEEEEEecccccCCHHHHHHHHHHHHHcCCCEEeecCCC
Confidence 0224444444 3557778888899 99999999854
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.61 E-value=0.29 Score=45.33 Aligned_cols=78 Identities=8% Similarity=0.017 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehh
Q psy7344 124 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVA 203 (240)
Q Consensus 124 ~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~ 203 (240)
...+....+.++++.++|.|.|+.+|++ +..+.++++.+++.. .++||.++.-
T Consensus 226 ~~~~~~~~a~~l~~aG~d~I~id~a~g~---------------~~~~~~~v~~i~~~~----------p~~~Vi~g~v-- 278 (490)
T 4avf_A 226 TGADTGERVAALVAAGVDVVVVDTAHGH---------------SKGVIERVRWVKQTF----------PDVQVIGGNI-- 278 (490)
T ss_dssp SSTTHHHHHHHHHHTTCSEEEEECSCCS---------------BHHHHHHHHHHHHHC----------TTSEEEEEEE--
T ss_pred cccchHHHHHHHhhcccceEEecccCCc---------------chhHHHHHHHHHHHC----------CCceEEEeee--
Confidence 3444555555566779999999988643 234446666666651 2568877532
Q ss_pred cHHHHHHHHhC-CCCeEEE------ecccccc
Q psy7344 204 KRGHYGAYLQD-DWPLLTE------LGKMAML 228 (240)
Q Consensus 204 ~~~~~~~~l~~-G~~~iti------h~R~~~~ 228 (240)
.+.+.++.+++ |+|+|.+ |..|+..
T Consensus 279 ~t~e~a~~l~~aGaD~I~vg~g~Gs~~~t~~~ 310 (490)
T 4avf_A 279 ATAEAAKALAEAGADAVKVGIGPGSICTTRIV 310 (490)
T ss_dssp CSHHHHHHHHHTTCSEEEECSSCSTTCHHHHH
T ss_pred CcHHHHHHHHHcCCCEEEECCCCCcCCCcccc
Confidence 23467888888 9999998 5555544
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=90.61 E-value=0.63 Score=43.18 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=50.6
Q ss_pred HHHccCCCEEEecCCCchh-hhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHH
Q psy7344 134 KLAEPHCDGIDINIGCPQM-VAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYL 212 (240)
Q Consensus 134 ~~le~~~d~Idin~gCP~~-~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l 212 (240)
.+++.|+|+|.++.| |-. ...+...|. -..++..+.++.+++++ .++||.+-..+.+..++++++
T Consensus 288 ~l~~aGaD~I~Vg~g-~Gs~~~tr~~~g~-g~p~~~~i~~v~~~~~~------------~~iPVIa~GGI~~~~di~kal 353 (496)
T 4fxs_A 288 ALIEAGVSAVKVGIG-PGSICTTRIVTGV-GVPQITAIADAAGVANE------------YGIPVIADGGIRFSGDISKAI 353 (496)
T ss_dssp HHHHHTCSEEEECSS-CCTTBCHHHHHCC-CCCHHHHHHHHHHHHGG------------GTCCEEEESCCCSHHHHHHHH
T ss_pred HHHHhCCCEEEECCC-CCcCcccccccCC-CccHHHHHHHHHHHhcc------------CCCeEEEeCCCCCHHHHHHHH
Confidence 334459999998754 211 111111111 13578888888887654 356888877777888898888
Q ss_pred hCCCCeEEEeccc
Q psy7344 213 QDDWPLLTELGKM 225 (240)
Q Consensus 213 ~~G~~~itih~R~ 225 (240)
..|||++.+ ||.
T Consensus 354 a~GAd~V~i-Gs~ 365 (496)
T 4fxs_A 354 AAGASCVMV-GSM 365 (496)
T ss_dssp HTTCSEEEE-STT
T ss_pred HcCCCeEEe-cHH
Confidence 779999998 553
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=90.39 E-value=0.71 Score=40.04 Aligned_cols=69 Identities=19% Similarity=0.080 Sum_probs=45.2
Q ss_pred HHHHHHcc-CCCEEEec--CCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHH
Q psy7344 131 EAAKLAEP-HCDGIDIN--IGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGH 207 (240)
Q Consensus 131 ~aa~~le~-~~d~Idin--~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~ 207 (240)
+.|+..++ |++.|.+- ..|... ..+| ...+.+++.++++.+. +++||.+|.++.. .+
T Consensus 32 e~A~~ye~~GA~~lsvLe~~~~Di~--~~~g--~~R~~~~~~i~~i~~~---------------v~iPvl~k~~i~~-id 91 (297)
T 4adt_A 32 EQAKIAEKAGAIGVMILENIPSELR--NTDG--VARSVDPLKIEEIRKC---------------ISINVLAKVRIGH-FV 91 (297)
T ss_dssp HHHHHHHHHTCSEEEECCCCC-------CCC--CCCCCCHHHHHHHHTT---------------CCSEEEEEEETTC-HH
T ss_pred HHHHHHHHcCCCEEEEecCCCCcch--hcCC--cccCCCHHHHHHHHHh---------------cCCCEEEeccCCc-HH
Confidence 44666665 78888754 444433 2222 1235688888776653 6889999998655 67
Q ss_pred HHHHHhC-CCCeE
Q psy7344 208 YGAYLQD-DWPLL 219 (240)
Q Consensus 208 ~~~~l~~-G~~~i 219 (240)
.++.+++ |||.|
T Consensus 92 e~qil~aaGAD~I 104 (297)
T 4adt_A 92 EAQILEELKVDML 104 (297)
T ss_dssp HHHHHHHTTCSEE
T ss_pred HHHHHHHcCCCEE
Confidence 7888888 99999
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=89.93 E-value=1.8 Score=37.64 Aligned_cols=102 Identities=6% Similarity=-0.202 Sum_probs=58.0
Q ss_pred CceeEEee-c-CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 115 CGHSLMFC-G-NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 115 ~pvivqi~-g-~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
.|+++-+- | ++++...+.++.+++ |+.+|.|-=.-..+..-|- .|..|..-.+.+.+|..+.... ..
T Consensus 89 ~PviaD~d~Gyg~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cgh~-~gk~l~~~~e~~~rI~Aa~~A~-~~-------- 158 (307)
T 3lye_A 89 PPLIADMDTGYGGPIMVARTVEHYIRSGVAGAHLEDQILTKRCGHL-SGKKVVSRDEYLVRIRAAVATK-RR-------- 158 (307)
T ss_dssp CCEEEECTTCSSSHHHHHHHHHHHHHTTCCEEEECCBCCCC---------CBCCHHHHHHHHHHHHHHH-HH--------
T ss_pred CcEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEcCCCCCcccCCC-CCCeecCHHHHHHHHHHHHHHH-Hh--------
Confidence 78888772 2 478887888887754 8999988655322221111 1333433344444544433221 00
Q ss_pred CCeeeEEeee--------hhcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 192 NDINIGCPQM--------VAKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 192 ~~~pvsvK~r--------~~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
.+.++.+.-| ++++++-++++.+ |||.|-+|+.+.
T Consensus 159 ~~~d~~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~~~~~ 202 (307)
T 3lye_A 159 LRSDFVLIARTDALQSLGYEECIERLRAARDEGADVGLLEGFRS 202 (307)
T ss_dssp TTCCCEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEECCCSC
T ss_pred cCCCeEEEEechhhhccCHHHHHHHHHHHHHCCCCEEEecCCCC
Confidence 1234445555 2456777788888 999999998654
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=89.92 E-value=0.77 Score=39.10 Aligned_cols=68 Identities=7% Similarity=-0.099 Sum_probs=48.0
Q ss_pred HHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHH
Q psy7344 132 AAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGA 210 (240)
Q Consensus 132 aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~ 210 (240)
.++++++ |++.||- .|.|. |.|.. +.||+.++.+++. .++||.+.-.+.+..+.++
T Consensus 148 ~akrl~~~G~~aVmP-lg~pI------GsG~G-i~~~~lI~~I~e~---------------~~vPVI~eGGI~TPsDAa~ 204 (265)
T 1wv2_A 148 IARQLAEIGCIAVMP-LAGLI------GSGLG-ICNPYNLRIILEE---------------AKVPVLVDAGVGTASDAAI 204 (265)
T ss_dssp HHHHHHHSCCSEEEE-CSSST------TCCCC-CSCHHHHHHHHHH---------------CSSCBEEESCCCSHHHHHH
T ss_pred HHHHHHHhCCCEEEe-CCccC------CCCCC-cCCHHHHHHHHhc---------------CCCCEEEeCCCCCHHHHHH
Confidence 4555544 7888854 34342 23332 3689999887764 5679999888888888888
Q ss_pred HHhCCCCeEEEe
Q psy7344 211 YLQDDWPLLTEL 222 (240)
Q Consensus 211 ~l~~G~~~itih 222 (240)
+++.|+|++.+-
T Consensus 205 AmeLGAdgVlVg 216 (265)
T 1wv2_A 205 AMELGCEAVLMN 216 (265)
T ss_dssp HHHHTCSEEEES
T ss_pred HHHcCCCEEEEC
Confidence 888899999874
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=89.84 E-value=0.53 Score=39.20 Aligned_cols=100 Identities=9% Similarity=-0.104 Sum_probs=60.4
Q ss_pred eCChhhHHHhhhcccCCCCceeEEee---cC-CH---HHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHH
Q psy7344 97 QDDWPLLTELGFKTRSHMCGHSLMFC---GN-DS---KNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPL 169 (240)
Q Consensus 97 ~~d~eli~~i~~~~~~~~~pvivqi~---g~-d~---~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~ 169 (240)
...++.|+++...+ +.|++.... ++ +. .++.++.+.++.|+|.|-++... ..+|+.
T Consensus 55 ~~~~~~i~~ir~~v---~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~l~~~~--------------~~~p~~ 117 (232)
T 3igs_A 55 IEGIDNLRMTRSLV---SVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGTA--------------RQRPVA 117 (232)
T ss_dssp EESHHHHHHHHTTC---CSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCS--------------SCCSSC
T ss_pred ECCHHHHHHHHHhc---CCCEEEEEeecCCCcceEeCccHHHHHHHHHcCCCEEEECccc--------------cCCHHH
Confidence 34577788876654 478753321 11 11 12334444556699999887662 235667
Q ss_pred HHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEE--Eecccccc
Q psy7344 170 LTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLT--ELGKMAML 228 (240)
Q Consensus 170 i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~it--ih~R~~~~ 228 (240)
+.++++.+++. .+++.+.. .+.+.++.+++ |+|.|. +|++|...
T Consensus 118 l~~~i~~~~~~------------g~~v~~~v---~t~eea~~a~~~Gad~Ig~~~~g~t~~~ 164 (232)
T 3igs_A 118 VEALLARIHHH------------HLLTMADC---SSVDDGLACQRLGADIIGTTMSGYTTPD 164 (232)
T ss_dssp HHHHHHHHHHT------------TCEEEEEC---CSHHHHHHHHHTTCSEEECTTTTSSSSS
T ss_pred HHHHHHHHHHC------------CCEEEEeC---CCHHHHHHHHhCCCCEEEEcCccCCCCC
Confidence 77788777653 44565543 34566777778 999995 56766544
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=89.74 E-value=1.6 Score=37.51 Aligned_cols=79 Identities=10% Similarity=-0.046 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.-.++++.+.+.+ . .++||.+=+-
T Consensus 22 D~~~l~~lv~~li~~Gv~gl~~~Gt----------tGE~~~Ls~~Er~~v~~~~~~~~--------~-gr~pviaGvg~~ 82 (294)
T 3b4u_A 22 DIDAMIAHARRCLSNGCDSVTLFGT----------TGEGCSVGSRERQAILSSFIAAG--------I-APSRIVTGVLVD 82 (294)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESST----------TTTGGGSCHHHHHHHHHHHHHTT--------C-CGGGEEEEECCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc----------ccChhhCCHHHHHHHHHHHHHHh--------C-CCCcEEEeCCCc
Confidence 667777777766 458999887433 44444446666667777776651 1 2678887776
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+-
T Consensus 83 ~t~~ai~la~~A~~~Gadavlv~ 105 (294)
T 3b4u_A 83 SIEDAADQSAEALNAGARNILLA 105 (294)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEc
Confidence 5677899999999 99999884
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=89.74 E-value=0.65 Score=41.68 Aligned_cols=91 Identities=13% Similarity=0.038 Sum_probs=53.0
Q ss_pred CCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchh--hh-hcccccccccCCHHHHHHHHHHhhhccccccCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQM--VA-KRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCD 190 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~--~~-~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~ 190 (240)
+.|+++. ...++ .++.+..+.|+|+|.++.+ |-. .+ ...+.| ..+++.+.++.+.+..
T Consensus 194 ~~pviv~-~v~~~---~~a~~a~~~Gad~I~vg~~-~G~~~~~~~~~~~g---~p~~~~l~~v~~~~~~----------- 254 (404)
T 1eep_A 194 NLDLIAG-NIVTK---EAALDLISVGADCLKVGIG-PGSICTTRIVAGVG---VPQITAICDVYEACNN----------- 254 (404)
T ss_dssp TCEEEEE-EECSH---HHHHHHHTTTCSEEEECSS-CSTTSHHHHHHCCC---CCHHHHHHHHHHHHTT-----------
T ss_pred CCeEEEc-CCCcH---HHHHHHHhcCCCEEEECCC-CCcCcCccccCCCC---cchHHHHHHHHHHHhh-----------
Confidence 4677652 11333 2333344568999999543 111 00 011112 2355666666654332
Q ss_pred CCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 191 GNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 191 ~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
.++||.+-..+.+..+.++++..|||++.+ ||-
T Consensus 255 -~~ipVia~GGI~~~~d~~~ala~GAd~V~i-G~~ 287 (404)
T 1eep_A 255 -TNICIIADGGIRFSGDVVKAIAAGADSVMI-GNL 287 (404)
T ss_dssp -SSCEEEEESCCCSHHHHHHHHHHTCSEEEE-CHH
T ss_pred -cCceEEEECCCCCHHHHHHHHHcCCCHHhh-CHH
Confidence 467888877777778888888779999998 554
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.67 E-value=0.79 Score=42.40 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=51.0
Q ss_pred HHHHHHccCCCEEEecCCCchhhhhc--ccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHH
Q psy7344 131 EAAKLAEPHCDGIDINIGCPQMVAKR--GHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHY 208 (240)
Q Consensus 131 ~aa~~le~~~d~Idin~gCP~~~~~~--~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~ 208 (240)
.+.++.+.|+|+|-++.|--.....+ .+.| ..+++.+.++.+++++ .++||.+-..+.+..++
T Consensus 283 ~a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~g---~p~~~~l~~v~~~~~~------------~~iPVIa~GGI~~~~di 347 (490)
T 4avf_A 283 AAKALAEAGADAVKVGIGPGSICTTRIVAGVG---VPQISAIANVAAALEG------------TGVPLIADGGIRFSGDL 347 (490)
T ss_dssp HHHHHHHTTCSEEEECSSCSTTCHHHHHTCBC---CCHHHHHHHHHHHHTT------------TTCCEEEESCCCSHHHH
T ss_pred HHHHHHHcCCCEEEECCCCCcCCCccccCCCC---ccHHHHHHHHHHHhcc------------CCCcEEEeCCCCCHHHH
Confidence 34444456999999965511111111 1222 3577888888877654 35788887777778888
Q ss_pred HHHHhCCCCeEEEecc
Q psy7344 209 GAYLQDDWPLLTELGK 224 (240)
Q Consensus 209 ~~~l~~G~~~itih~R 224 (240)
++++..||+++.+ |+
T Consensus 348 ~kal~~GAd~V~v-Gs 362 (490)
T 4avf_A 348 AKAMVAGAYCVMM-GS 362 (490)
T ss_dssp HHHHHHTCSEEEE-CT
T ss_pred HHHHHcCCCeeee-cH
Confidence 8888669999998 54
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=89.66 E-value=0.69 Score=43.39 Aligned_cols=87 Identities=13% Similarity=0.050 Sum_probs=59.7
Q ss_pred cCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh
Q psy7344 123 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV 202 (240)
Q Consensus 123 g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~ 202 (240)
++++.+...+..+++.|+|+|-++.|.-+..+.+.-.|-.. .....+.++.++.++ ..+||.+-..+
T Consensus 327 aGNVaT~e~a~~Li~aGAD~vkVGiGpGSiCtTr~v~GvG~-PQ~tAi~~~a~~a~~------------~~vpvIADGGI 393 (556)
T 4af0_A 327 AGNVVTREQAAQLIAAGADGLRIGMGSGSICITQEVMAVGR-PQGTAVYAVAEFASR------------FGIPCIADGGI 393 (556)
T ss_dssp EEEECSHHHHHHHHHHTCSEEEECSSCSTTBCCTTTCCSCC-CHHHHHHHHHHHHGG------------GTCCEEEESCC
T ss_pred eccccCHHHHHHHHHcCCCEEeecCCCCcccccccccCCCC-cHHHHHHHHHHHHHH------------cCCCEEecCCc
Confidence 34555554455555679999999999555555554444322 344455555555444 46789888888
Q ss_pred hcHHHHHHHHhCCCCeEEEe
Q psy7344 203 AKRGHYGAYLQDDWPLLTEL 222 (240)
Q Consensus 203 ~~~~~~~~~l~~G~~~itih 222 (240)
...-+++++|..|||.+.+-
T Consensus 394 ~~sGDi~KAlaaGAd~VMlG 413 (556)
T 4af0_A 394 GNIGHIAKALALGASAVMMG 413 (556)
T ss_dssp CSHHHHHHHHHTTCSEEEES
T ss_pred CcchHHHHHhhcCCCEEEEc
Confidence 88899999999999999983
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=89.63 E-value=0.95 Score=38.23 Aligned_cols=94 Identities=12% Similarity=-0.034 Sum_probs=55.9
Q ss_pred eeEEeecC--CHHHHHHHHHHHcc-CCCEEEecCCC--ch---hhhhcccccccc--cCCHHHHHHHHHHhhhccccccC
Q psy7344 117 HSLMFCGN--DSKNLTEAAKLAEP-HCDGIDINIGC--PQ---MVAKRGHYGAYL--QDDWPLLTNLVYSPNMVHFVIAE 186 (240)
Q Consensus 117 vivqi~g~--d~~~~~~aa~~le~-~~d~Idin~gC--P~---~~~~~~g~G~~l--~~~p~~i~~iv~~~~~~~~~i~~ 186 (240)
++.-|..+ +.+.+.+.++.+++ |+|+|+|+.=- |. +...+.. -.+| .-+.+.+-++++.+++.
T Consensus 19 ~i~~i~~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~-~~al~~G~~~~~~~~~v~~ir~~------ 91 (262)
T 2ekc_A 19 LVSYLMVGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAH-EVALKNGIRFEDVLELSETLRKE------ 91 (262)
T ss_dssp EEEEEETTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHH------
T ss_pred EEEEecCCCCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHH-HHHHHcCCCHHHHHHHHHHHHhh------
Confidence 44444444 55678888888866 79999996521 11 0000000 0000 12445556777777776
Q ss_pred CCCCCC-CeeeEEeee-hh-----cHHHHHHHHhC-CCCeEEEec
Q psy7344 187 PHCDGN-DINIGCPQM-VA-----KRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 187 ~~~~~~-~~pvsvK~r-~~-----~~~~~~~~l~~-G~~~itih~ 223 (240)
. ++|+.+ +. ++ .+..+++.+.+ |+|++.++.
T Consensus 92 -----~~~~Pi~~-m~y~n~v~~~g~~~f~~~~~~aG~dgvii~d 130 (262)
T 2ekc_A 92 -----FPDIPFLL-MTYYNPIFRIGLEKFCRLSREKGIDGFIVPD 130 (262)
T ss_dssp -----CTTSCEEE-ECCHHHHHHHCHHHHHHHHHHTTCCEEECTT
T ss_pred -----cCCCCEEE-EecCcHHHHhhHHHHHHHHHHcCCCEEEECC
Confidence 4 678877 32 22 23678888888 999998864
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=89.52 E-value=1.4 Score=38.07 Aligned_cols=79 Identities=11% Similarity=-0.013 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.-.++++.+.+.+ . .++||.+-+.
T Consensus 34 D~~~l~~lv~~li~~Gv~gi~v~Gt----------tGE~~~Lt~~Er~~v~~~~~~~~--------~-grvpviaGvg~~ 94 (304)
T 3l21_A 34 DTATAARLANHLVDQGCDGLVVSGT----------TGESPTTTDGEKIELLRAVLEAV--------G-DRARVIAGAGTY 94 (304)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESST----------TTTGGGSCHHHHHHHHHHHHHHH--------T-TTSEEEEECCCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCcc----------ccchhhCCHHHHHHHHHHHHHHh--------C-CCCeEEEeCCCC
Confidence 677777877776 458999977443 34444445666667777766641 1 2678888775
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+.
T Consensus 95 ~t~~ai~la~~a~~~Gadavlv~ 117 (304)
T 3l21_A 95 DTAHSIRLAKACAAEGAHGLLVV 117 (304)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC
Confidence 5678899999999 99999884
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=89.39 E-value=1.4 Score=37.97 Aligned_cols=79 Identities=9% Similarity=-0.096 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.-.++++.+.+.+ . .++||.+-+-
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~Gt----------TGE~~~Ls~eEr~~v~~~~~~~~--------~-grvpViaGvg~~ 91 (301)
T 1xky_A 31 DFAKTTKLVNYLIDNGTTAIVVGGT----------TGESPTLTSEEKVALYRHVVSVV--------D-KRVPVIAGTGSN 91 (301)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESST----------TTTGGGSCHHHHHHHHHHHHHHH--------T-TSSCEEEECCCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc----------ccChhhCCHHHHHHHHHHHHHHh--------C-CCceEEeCCCCC
Confidence 667777777766 458999987433 44444446666667777766641 1 2678887776
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+-
T Consensus 92 ~t~~ai~la~~A~~~Gadavlv~ 114 (301)
T 1xky_A 92 NTHASIDLTKKATEVGVDAVMLV 114 (301)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEc
Confidence 5677899999999 99999884
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=89.22 E-value=1.5 Score=37.72 Aligned_cols=79 Identities=9% Similarity=-0.078 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.-.++++.+.+.+ . -++||.+-+.
T Consensus 26 D~~~l~~lv~~li~~Gv~gl~~~Gt----------tGE~~~Ls~~Er~~v~~~~~~~~--------~-grvpviaGvg~~ 86 (297)
T 3flu_A 26 HYEQLRDLIDWHIENGTDGIVAVGT----------TGESATLSVEEHTAVIEAVVKHV--------A-KRVPVIAGTGAN 86 (297)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESST----------TTTGGGSCHHHHHHHHHHHHHHH--------T-TSSCEEEECCCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCcc----------ccCcccCCHHHHHHHHHHHHHHh--------C-CCCcEEEeCCCc
Confidence 667777777766 558999987544 34444445666667777666641 1 2578888666
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+.
T Consensus 87 ~t~~ai~la~~a~~~Gadavlv~ 109 (297)
T 3flu_A 87 NTVEAIALSQAAEKAGADYTLSV 109 (297)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC
Confidence 5678899999999 99999884
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=89.21 E-value=1.5 Score=37.78 Aligned_cols=79 Identities=10% Similarity=0.102 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.-.++++.+.+.+ . .++||.+-+.
T Consensus 30 D~~~l~~lv~~li~~Gv~Gl~v~Gt----------TGE~~~Ls~eEr~~v~~~~~~~~--------~-grvpViaGvg~~ 90 (303)
T 2wkj_A 30 DKASLRRLVQFNIQQGIDGLYVGGS----------TGEAFVQSLSEREQVLEIVAEEA--------K-GKIKLIAHVGCV 90 (303)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESST----------TTTGGGSCHHHHHHHHHHHHHHH--------T-TTSEEEEECCCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECee----------ccChhhCCHHHHHHHHHHHHHHh--------C-CCCcEEEecCCC
Confidence 667777777766 558999988433 44444446666667777766641 1 2678888776
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+-
T Consensus 91 ~t~~ai~la~~A~~~Gadavlv~ 113 (303)
T 2wkj_A 91 STAESQQLAASAKRYGFDAVSAV 113 (303)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CHHHHHHHHHHHHhCCCCEEEec
Confidence 4677899999999 99999884
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=89.15 E-value=1.9 Score=37.03 Aligned_cols=79 Identities=10% Similarity=-0.041 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.-.++++.+.+.+ . .++||.+-+-
T Consensus 19 D~~~l~~lv~~li~~Gv~gl~~~Gt----------tGE~~~Ls~~Er~~v~~~~~~~~--------~-grvpviaGvg~~ 79 (294)
T 2ehh_A 19 DYEALGNLIEFHVDNGTDAILVCGT----------TGESPTLTFEEHEKVIEFAVKRA--------A-GRIKVIAGTGGN 79 (294)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEESST----------TTTGGGSCHHHHHHHHHHHHHHH--------T-TSSEEEEECCCS
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcc----------ccChhhCCHHHHHHHHHHHHHHh--------C-CCCcEEEecCCC
Confidence 777788888876 558999887433 44444445555567777666641 1 2578887776
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+-
T Consensus 80 ~t~~ai~la~~A~~~Gadavlv~ 102 (294)
T 2ehh_A 80 ATHEAVHLTAHAKEVGADGALVV 102 (294)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEC
Confidence 4677889999999 99999884
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=89.05 E-value=1.6 Score=37.54 Aligned_cols=80 Identities=8% Similarity=-0.038 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.-.++++.+.+.+ .+.++||.+=+.
T Consensus 26 D~~~l~~lv~~li~~Gv~gl~v~Gt----------tGE~~~Ls~~Er~~v~~~~~~~~--------~g~rvpviaGvg~~ 87 (301)
T 3m5v_A 26 DEQSYARLIKRQIENGIDAVVPVGT----------TGESATLTHEEHRTCIEIAVETC--------KGTKVKVLAGAGSN 87 (301)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECSST----------TTTGGGSCHHHHHHHHHHHHHHH--------TTSSCEEEEECCCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc----------ccChhhCCHHHHHHHHHHHHHHh--------CCCCCeEEEeCCCC
Confidence 677777877776 558999977433 44444445666667777766641 112678888766
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+.
T Consensus 88 ~t~~ai~la~~a~~~Gadavlv~ 110 (301)
T 3m5v_A 88 ATHEAVGLAKFAKEHGADGILSV 110 (301)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEc
Confidence 5678899999999 99999884
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=88.94 E-value=2.5 Score=36.54 Aligned_cols=79 Identities=8% Similarity=-0.098 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+. .|++||-++-. +|....-..+.-.++++.+.+.+ . .++||.+=+.
T Consensus 33 D~~~l~~lv~~li~~Gv~Gl~v~Gt----------TGE~~~Ls~~Er~~v~~~~~~~~--------~-gr~pviaGvg~~ 93 (307)
T 3s5o_A 33 DYGKLEENLHKLGTFPFRGFVVQGS----------NGEFPFLTSSERLEVVSRVRQAM--------P-KNRLLLAGSGCE 93 (307)
T ss_dssp CHHHHHHHHHHHTTSCCSEEEESSG----------GGTGGGSCHHHHHHHHHHHHHTS--------C-TTSEEEEECCCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc----------ccchhhCCHHHHHHHHHHHHHHc--------C-CCCcEEEecCCC
Confidence 6677777777764 48899877433 44444445666667777776651 1 3678887665
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+.
T Consensus 94 ~t~~ai~la~~A~~~Gadavlv~ 116 (307)
T 3s5o_A 94 STQATVEMTVSMAQVGADAAMVV 116 (307)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEc
Confidence 5677899999999 99999884
|
| >4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A* | Back alignment and structure |
|---|
Probab=88.92 E-value=1 Score=40.51 Aligned_cols=65 Identities=18% Similarity=0.258 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcc-CCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+++.++|++..+ |+|+|+|..+- |..-...-.||..+-..--.+.+|++++++++ -+-||
T Consensus 172 ~~F~~AA~rA~~AGFDgVEIH~AhGYLl~QFLSp~tN~RtDeYGGS~ENR~Rf~lEVi~aVr~~v----------g~d~v 241 (400)
T 4gbu_A 172 KEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAI----------GHEKV 241 (400)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHH----------CGGGE
T ss_pred HHHHHHHHHHHhcCcCeeeecccccchHHheecCcCCCCccccCCcHHHHHHHHHHHHHHHHHHc----------CCCcE
Confidence 357777777755 89999997752 22111223466655333446789999999984 23489
Q ss_pred EEeee
Q psy7344 197 GCPQM 201 (240)
Q Consensus 197 svK~r 201 (240)
.+|+.
T Consensus 242 gvRlS 246 (400)
T 4gbu_A 242 GLRLS 246 (400)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 98886
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=88.84 E-value=0.49 Score=39.83 Aligned_cols=129 Identities=12% Similarity=0.035 Sum_probs=67.4
Q ss_pred cccCCCccccccCchhhhhhhhcccceeeeCChhhHHHhhhcccCCCCceeEEeecCC-----HHH---HHHHHHHHccC
Q psy7344 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGND-----SKN---LTEAAKLAEPH 139 (240)
Q Consensus 68 ~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi~g~d-----~~~---~~~aa~~le~~ 139 (240)
.+.|+.+..++..-|.. ...++..+.+. ++..+..+.... ....|+++++..+. +.+ ...+.+.++.|
T Consensus 37 ~l~p~~~~~~~~~~~~~--~~~~g~~~i~~-~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~d~~~~~~~~~v~~a~~~G 112 (273)
T 2qjg_A 37 SNGPIKGLIDIRKTVND--VAEGGANAVLL-HKGIVRHGHRGY-GKDVGLIIHLSGGTAISPNPLKKVIVTTVEEAIRMG 112 (273)
T ss_dssp HHCSCTTSSSHHHHHHH--HHHHTCSEEEE-CHHHHHSCCCSS-SCCCEEEEECEECCTTSSSTTCCEECSCHHHHHHTT
T ss_pred ccCCCcchhhHHHHHHH--HHhcCCCEEEe-CHHHHHHHHHhh-cCCCCEEEEEcCCCcCCCCcccchHHHHHHHHHHcC
Confidence 36777665554322111 12222223222 344444332222 12468888987654 211 23344455679
Q ss_pred CCEE--EecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee-----------hhcHH
Q psy7344 140 CDGI--DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-----------VAKRG 206 (240)
Q Consensus 140 ~d~I--din~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-----------~~~~~ 206 (240)
++.| .+|.+|+... . ..+.++++++..++ ..+|+.+..- .....
T Consensus 113 a~~v~~~l~~~~~~~~--------~---~~~~~~~v~~~~~~------------~g~~viv~~~~~G~~l~~~~~~~~~~ 169 (273)
T 2qjg_A 113 ADAVSIHVNVGSDEDW--------E---AYRDLGMIAETCEY------------WGMPLIAMMYPRGKHIQNERDPELVA 169 (273)
T ss_dssp CSEEEEEEEETSTTHH--------H---HHHHHHHHHHHHHH------------HTCCEEEEEEECSTTCSCTTCHHHHH
T ss_pred CCEEEEEEecCCCCHH--------H---HHHHHHHHHHHHHH------------cCCCEEEEeCCCCcccCCCCCHhHHH
Confidence 9999 7888865221 1 11345555555443 2446666541 12335
Q ss_pred HHHHHHhC-CCCeEEEec
Q psy7344 207 HYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 207 ~~~~~l~~-G~~~itih~ 223 (240)
+.++.+++ |+|.|.++.
T Consensus 170 ~~a~~a~~~Gad~i~~~~ 187 (273)
T 2qjg_A 170 HAARLGAELGADIVKTSY 187 (273)
T ss_dssp HHHHHHHHTTCSEEEECC
T ss_pred HHHHHHHHcCCCEEEECC
Confidence 56688888 999999973
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=88.83 E-value=1.7 Score=38.01 Aligned_cols=79 Identities=8% Similarity=-0.049 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.-.++++.+.+.+ . .++||.+-+-
T Consensus 53 D~~~l~~lv~~li~~Gv~Gl~v~Gt----------TGE~~~Ls~eEr~~vi~~~ve~~--------~-grvpViaGvg~~ 113 (332)
T 2r8w_A 53 DIEAFSALIARLDAAEVDSVGILGS----------TGIYMYLTREERRRAIEAAATIL--------R-GRRTLMAGIGAL 113 (332)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEESST----------TTTGGGSCHHHHHHHHHHHHHHH--------T-TSSEEEEEECCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc----------ccChhhCCHHHHHHHHHHHHHHh--------C-CCCcEEEecCCC
Confidence 667777777766 458999887433 44444446666667777766641 1 2678888776
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+-
T Consensus 114 st~eai~la~~A~~~Gadavlv~ 136 (332)
T 2r8w_A 114 RTDEAVALAKDAEAAGADALLLA 136 (332)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEC
Confidence 5677899999999 99999883
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=88.81 E-value=1.8 Score=37.09 Aligned_cols=79 Identities=11% Similarity=0.026 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.-.++++.+.+.+ . .++||.+-+-
T Consensus 19 D~~~l~~lv~~li~~Gv~gl~~~Gt----------tGE~~~Ls~~Er~~v~~~~~~~~--------~-gr~pviaGvg~~ 79 (289)
T 2yxg_A 19 DFDGLEENINFLIENGVSGIVAVGT----------TGESPTLSHEEHKKVIEKVVDVV--------N-GRVQVIAGAGSN 79 (289)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESST----------TTTGGGSCHHHHHHHHHHHHHHH--------T-TSSEEEEECCCS
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcc----------ccChhhCCHHHHHHHHHHHHHHh--------C-CCCcEEEeCCCC
Confidence 777788887776 558999887433 44444445666667777666641 1 2578887776
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+-
T Consensus 80 ~t~~ai~la~~a~~~Gadavlv~ 102 (289)
T 2yxg_A 80 CTEEAIELSVFAEDVGADAVLSI 102 (289)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEC
Confidence 5677899999999 99999884
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=88.69 E-value=1.3 Score=38.46 Aligned_cols=79 Identities=11% Similarity=-0.058 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.-.++++.+.+.+ . .++||.+-+-
T Consensus 43 D~~~l~~lv~~li~~Gv~Gi~v~Gt----------TGE~~~Ls~~Er~~v~~~~v~~~--------~-grvpViaGvg~~ 103 (315)
T 3na8_A 43 DLPALGRSIERLIDGGVHAIAPLGS----------TGEGAYLSDPEWDEVVDFTLKTV--------A-HRVPTIVSVSDL 103 (315)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSSG----------GGTGGGSCHHHHHHHHHHHHHHH--------T-TSSCBEEECCCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc----------ccChhhCCHHHHHHHHHHHHHHh--------C-CCCcEEEecCCC
Confidence 667777777776 558999977433 44444445666667777766641 1 2578888766
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+-
T Consensus 104 ~t~~ai~la~~A~~~Gadavlv~ 126 (315)
T 3na8_A 104 TTAKTVRRAQFAESLGAEAVMVL 126 (315)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEC
Confidence 5678899999999 99999883
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=88.55 E-value=1.3 Score=37.06 Aligned_cols=81 Identities=14% Similarity=-0.079 Sum_probs=56.7
Q ss_pred eeEEeecCCHHHHHHHHHHHcc-CCCE--EEecCCC--chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEP-HCDG--IDINIGC--PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~-~~d~--Idin~gC--P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
+..+|...|...+.+.++.+++ |+|. +|+==|- |+. .+| + .+++.+++.
T Consensus 16 i~psila~D~~~l~~~i~~~~~~gad~lhvDvmDG~fvpn~-----t~G------~----~~v~~lr~~----------- 69 (237)
T 3cu2_A 16 LSVGILSANWLQLNEEVTTLLENQINVLHFDIADGQFSSLF-----TVG------A----IGIKYFPTH----------- 69 (237)
T ss_dssp EEEEGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCB-----CBC------T----HHHHTSCTT-----------
T ss_pred EEEeeeeCCcccHHHHHHHHHHcCCCEEEEEEecCccccch-----hhh------H----HHHHHHhhh-----------
Confidence 5667778898888888888865 6775 4552231 321 011 2 466776665
Q ss_pred CCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 192 NDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 192 ~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
++. -+++.+++...+++.+.+ |+|.+|+|.=.
T Consensus 70 ~~~--DvhLMv~~p~~~i~~~~~aGAd~itvH~ea 102 (237)
T 3cu2_A 70 CFK--DVHLMVRNQLEVAKAVVANGANLVTLQLEQ 102 (237)
T ss_dssp SEE--EEEEECSCHHHHHHHHHHTTCSEEEEETTC
T ss_pred CCC--CeEEEEECHHHHHHHHHHcCCCEEEEecCC
Confidence 443 888888888899999999 99999999743
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=88.54 E-value=1.6 Score=37.94 Aligned_cols=79 Identities=8% Similarity=-0.113 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.-.++++.+.+.+ . -++||.+=+.
T Consensus 42 D~~~l~~lv~~li~~Gv~Gl~v~Gt----------TGE~~~Ls~~Er~~v~~~~v~~~--------~-grvpViaGvg~~ 102 (314)
T 3qze_A 42 DWDSLAKLVDFHLQEGTNAIVAVGT----------TGESATLDVEEHIQVIRRVVDQV--------K-GRIPVIAGTGAN 102 (314)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSG----------GGTGGGCCHHHHHHHHHHHHHHH--------T-TSSCEEEECCCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc----------ccChhhCCHHHHHHHHHHHHHHh--------C-CCCcEEEeCCCc
Confidence 667777777776 458999977433 44444445666667777666641 1 2578888666
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+-
T Consensus 103 st~eai~la~~A~~~Gadavlv~ 125 (314)
T 3qze_A 103 STREAVALTEAAKSGGADACLLV 125 (314)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEc
Confidence 5678899999999 99999884
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=88.53 E-value=1.6 Score=37.72 Aligned_cols=79 Identities=10% Similarity=-0.063 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.-.++++.+.+.+ . .++||.+-+.
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~Gt----------TGE~~~Ls~eEr~~vi~~~~~~~--------~-grvpViaGvg~~ 91 (306)
T 1o5k_A 31 DLESYERLVRYQLENGVNALIVLGT----------TGESPTVNEDEREKLVSRTLEIV--------D-GKIPVIVGAGTN 91 (306)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSG----------GGTGGGCCHHHHHHHHHHHHHHH--------T-TSSCEEEECCCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCcc----------ccchhhCCHHHHHHHHHHHHHHh--------C-CCCeEEEcCCCc
Confidence 677788887776 458999877433 44444446666667777766641 1 2578887776
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+-
T Consensus 92 st~~ai~la~~A~~~Gadavlv~ 114 (306)
T 1o5k_A 92 STEKTLKLVKQAEKLGANGVLVV 114 (306)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEE
T ss_pred cHHHHHHHHHHHHhcCCCEEEEC
Confidence 5677899999999 99999884
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=88.53 E-value=1.4 Score=39.79 Aligned_cols=78 Identities=18% Similarity=0.097 Sum_probs=46.8
Q ss_pred HHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHH
Q psy7344 132 AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAY 211 (240)
Q Consensus 132 aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~ 211 (240)
+.++.+.|+|+|-++.+.-+..+.+...+. -..+++.+.++.+.++. .++||.+-..+.+..+++++
T Consensus 198 A~~a~~aGAD~I~vG~g~Gs~~~tr~~~g~-g~p~~~al~~v~~~~~~------------~~IPVIA~GGI~~~~di~ka 264 (400)
T 3ffs_A 198 TKELIENGADGIKVGIGPGSICTTRIVAGV-GVPQITAIEKCSSVASK------------FGIPIIADGGIRYSGDIGKA 264 (400)
T ss_dssp HHHHHHTTCSEEEECC---------CCSCB-CCCHHHHHHHHHHHHTT------------TTCCEEEESCCCSHHHHHHH
T ss_pred HHHHHHcCCCEEEEeCCCCcCccccccccc-chhHHHHHHHHHHHHHh------------cCCCEEecCCCCCHHHHHHH
Confidence 333445599999996551111111111111 13567777777776543 36788887777777888888
Q ss_pred HhCCCCeEEEe
Q psy7344 212 LQDDWPLLTEL 222 (240)
Q Consensus 212 l~~G~~~itih 222 (240)
+..||+++.+-
T Consensus 265 lalGAd~V~vG 275 (400)
T 3ffs_A 265 LAVGASSVMIG 275 (400)
T ss_dssp HTTTCSEEEEC
T ss_pred HHcCCCEEEEC
Confidence 87799999883
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=88.52 E-value=1.7 Score=37.21 Aligned_cols=79 Identities=10% Similarity=-0.074 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.-.++++.+.+.+ . .++||.+-+.
T Consensus 20 D~~~l~~lv~~li~~Gv~gl~~~Gt----------tGE~~~Ls~~Er~~v~~~~~~~~--------~-gr~pviaGvg~~ 80 (292)
T 2ojp_A 20 CRASLKKLIDYHVASGTSAIVSVGT----------TGESATLNHDEHADVVMMTLDLA--------D-GRIPVIAGTGAN 80 (292)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESST----------TTTGGGSCHHHHHHHHHHHHHHH--------T-TSSCEEEECCCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc----------ccchhhCCHHHHHHHHHHHHHHh--------C-CCCcEEEecCCc
Confidence 677777877776 458999887433 44444445655567777666641 1 2578887776
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+-
T Consensus 81 ~t~~ai~la~~a~~~Gadavlv~ 103 (292)
T 2ojp_A 81 ATAEAISLTQRFNDSGIVGCLTV 103 (292)
T ss_dssp SHHHHHHHHHHTTTSSCSEEEEE
T ss_pred cHHHHHHHHHHHHhcCCCEEEEC
Confidence 4667889999999 99999884
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=88.51 E-value=1.8 Score=37.06 Aligned_cols=79 Identities=14% Similarity=-0.051 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.-.++++.+.+.+ . .++||.+-+-
T Consensus 20 D~~~l~~lv~~li~~Gv~gl~~~Gt----------tGE~~~Ls~~Er~~v~~~~~~~~--------~-gr~pviaGvg~~ 80 (291)
T 3tak_A 20 DWKSLEKLVEWHIEQGTNSIVAVGT----------TGEASTLSMEEHTQVIKEIIRVA--------N-KRIPIIAGTGAN 80 (291)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESST----------TTTGGGSCHHHHHHHHHHHHHHH--------T-TSSCEEEECCCS
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcc----------ccccccCCHHHHHHHHHHHHHHh--------C-CCCeEEEeCCCC
Confidence 667777777776 458999977433 34444345565567777766641 1 2578888666
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+.
T Consensus 81 ~t~~ai~la~~a~~~Gadavlv~ 103 (291)
T 3tak_A 81 STREAIELTKAAKDLGADAALLV 103 (291)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEc
Confidence 5678899999999 99999884
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=88.47 E-value=2 Score=36.86 Aligned_cols=79 Identities=11% Similarity=0.147 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHH-c-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee-
Q psy7344 125 DSKNLTEAAKLA-E-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r- 201 (240)
|.+.+.+.++.+ + .|++||-++-. +|....-.++.-.++++.+.+.+ . .++||.+-+.
T Consensus 22 D~~~l~~lv~~li~~~Gv~gl~~~Gt----------tGE~~~Ls~~Er~~v~~~~~~~~--------~-grvpviaGvg~ 82 (293)
T 1f6k_A 22 NEKGLRQIIRHNIDKMKVDGLYVGGS----------TGENFMLSTEEKKEIFRIAKDEA--------K-DQIALIAQVGS 82 (293)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEESSG----------GGTGGGSCHHHHHHHHHHHHHHH--------T-TSSEEEEECCC
T ss_pred CHHHHHHHHHHHHhhCCCcEEEeCcc----------ccchhhCCHHHHHHHHHHHHHHh--------C-CCCeEEEecCC
Confidence 677777877765 6 68999887433 44444445666667777766641 1 2678887776
Q ss_pred --hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 --VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 --~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+-
T Consensus 83 ~~t~~ai~la~~a~~~Gadavlv~ 106 (293)
T 1f6k_A 83 VNLKEAVELGKYATELGYDCLSAV 106 (293)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEC
Confidence 5677899999999 99999884
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=88.39 E-value=0.97 Score=39.59 Aligned_cols=35 Identities=9% Similarity=0.033 Sum_probs=27.6
Q ss_pred CCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccccc
Q psy7344 192 NDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAM 227 (240)
Q Consensus 192 ~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~~~ 227 (240)
.++||.+-..+.+..+.++++..||+++.+ ||--.
T Consensus 209 ~~ipVIa~GGI~~g~Dv~kalalGAdaV~i-Gr~~l 243 (336)
T 1ypf_A 209 ASKPIIADGGIRTNGDVAKSIRFGATMVMI-GSLFA 243 (336)
T ss_dssp CSSCEEEESCCCSTHHHHHHHHTTCSEEEE-SGGGT
T ss_pred cCCcEEEeCCCCCHHHHHHHHHcCCCEEEe-Chhhh
Confidence 466888877777778888888779999998 77543
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=88.33 E-value=0.71 Score=42.77 Aligned_cols=32 Identities=16% Similarity=0.022 Sum_probs=27.4
Q ss_pred CCeeeEEeeehhcHHHHHHHHhCCCCeEEEecc
Q psy7344 192 NDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224 (240)
Q Consensus 192 ~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R 224 (240)
.++||.+-..+.+..+.++++..||+++.+ ||
T Consensus 357 ~~ipVia~GGI~~~~di~kala~GAd~V~i-G~ 388 (514)
T 1jcn_A 357 FGVPIIADGGIQTVGHVVKALALGASTVMM-GS 388 (514)
T ss_dssp GTCCEEEESCCCSHHHHHHHHHTTCSEEEE-ST
T ss_pred CCCCEEEECCCCCHHHHHHHHHcCCCeeeE-CH
Confidence 567898888888888899988889999999 76
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=88.31 E-value=2 Score=37.11 Aligned_cols=79 Identities=9% Similarity=-0.105 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.=.++++.+.+.+ . .++||.+-+-
T Consensus 35 D~~~l~~lv~~li~~Gv~gl~v~Gt----------tGE~~~Ls~~Er~~v~~~~~~~~--------~-grvpviaGvg~~ 95 (304)
T 3cpr_A 35 DIAAGREVAAYLVDKGLDSLVLAGT----------TGESPTTTAAEKLELLKAVREEV--------G-DRAKLIAGVGTN 95 (304)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESST----------TTTTTTSCHHHHHHHHHHHHHHH--------T-TTSEEEEECCCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc----------ccChhhCCHHHHHHHHHHHHHHh--------C-CCCcEEecCCCC
Confidence 677777877766 458999877433 44444445555567777666641 1 2578887776
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+-
T Consensus 96 st~~ai~la~~A~~~Gadavlv~ 118 (304)
T 3cpr_A 96 NTRTSVELAEAAASAGADGLLVV 118 (304)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEC
Confidence 5677899999999 99999873
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=88.16 E-value=0.44 Score=41.04 Aligned_cols=93 Identities=9% Similarity=0.022 Sum_probs=52.5
Q ss_pred CCceeEEeecCCHH-HHHHHHHHHcc-CCCEEEecCCCchhhhhccccccccc---CCHHHHHHHHHHhhhccccccCCC
Q psy7344 114 MCGHSLMFCGNDSK-NLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQ---DDWPLLTNLVYSPNMVHFVIAEPH 188 (240)
Q Consensus 114 ~~pvivqi~g~d~~-~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~---~~p~~i~~iv~~~~~~~~~i~~~~ 188 (240)
+.||+.|+.+.||. .+-...+.+.+ |+.|| +|.. .... ..+.++..|- --.+...++++..++.
T Consensus 94 ~iPV~Agv~~~DP~~~~g~~Le~lk~~Gf~Gv-~N~p-tvgl-idG~fr~~LEE~gm~~~~eve~I~~A~~~-------- 162 (286)
T 2p10_A 94 HTPVLAGVNGTDPFMVMSTFLRELKEIGFAGV-QNFP-TVGL-IDGLFRQNLEETGMSYAQEVEMIAEAHKL-------- 162 (286)
T ss_dssp SSCEEEEECTTCTTCCHHHHHHHHHHHTCCEE-EECS-CGGG-CCHHHHHHHHHTTCCHHHHHHHHHHHHHT--------
T ss_pred CCCEEEEECCcCCCcCHHHHHHHHHHhCCceE-EECC-Cccc-ccchhhhhHhhcCCCHHHHHHHHHHHHHC--------
Confidence 58999999888886 45555566655 89999 9985 2221 2233333331 1234444455444442
Q ss_pred CCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEecc
Q psy7344 189 CDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 189 ~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R 224 (240)
++ +|+ -+....+-++...+ |+|.|.+|.=
T Consensus 163 ----gL-~Ti--~~v~~~eeA~amA~agpDiI~~h~g 192 (286)
T 2p10_A 163 ----DL-LTT--PYVFSPEDAVAMAKAGADILVCHMG 192 (286)
T ss_dssp ----TC-EEC--CEECSHHHHHHHHHHTCSEEEEECS
T ss_pred ----CC-eEE--EecCCHHHHHHHHHcCCCEEEECCC
Confidence 11 111 01233444555566 9999999964
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=88.09 E-value=1.6 Score=37.62 Aligned_cols=79 Identities=10% Similarity=-0.068 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.-.++++.+.+.+ . .++||.+-+.
T Consensus 19 D~~~l~~lv~~li~~Gv~gi~v~Gt----------tGE~~~Ls~~Er~~v~~~~~~~~--------~-grvpviaGvg~~ 79 (297)
T 2rfg_A 19 DEKALAGLVDWQIKHGAHGLVPVGT----------TGESPTLTEEEHKRVVALVAEQA--------Q-GRVPVIAGAGSN 79 (297)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSSG----------GGTGGGSCHHHHHHHHHHHHHHH--------T-TSSCBEEECCCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc----------ccchhhCCHHHHHHHHHHHHHHh--------C-CCCeEEEccCCC
Confidence 777777877766 558999877332 44444445655567777666641 1 2578887776
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+-
T Consensus 80 ~t~~ai~la~~A~~~Gadavlv~ 102 (297)
T 2rfg_A 80 NPVEAVRYAQHAQQAGADAVLCV 102 (297)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEc
Confidence 5677899999999 99999883
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=88.03 E-value=1.8 Score=37.05 Aligned_cols=79 Identities=11% Similarity=-0.058 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.-.++++.+.+.+ . .++||.+-+-
T Consensus 20 D~~~l~~lv~~li~~Gv~gl~~~Gt----------tGE~~~Ls~~Er~~v~~~~~~~~--------~-gr~pvi~Gvg~~ 80 (291)
T 3a5f_A 20 DFDKLSELIEWHIKSKTDAIIVCGT----------TGEATTMTETERKETIKFVIDKV--------N-KRIPVIAGTGSN 80 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSG----------GGTGGGSCHHHHHHHHHHHHHHH--------T-TSSCEEEECCCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc----------ccChhhCCHHHHHHHHHHHHHHh--------C-CCCcEEEeCCcc
Confidence 566677777765 458999877433 44444445555567777666541 1 2578887776
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+-
T Consensus 81 ~t~~ai~la~~a~~~Gadavlv~ 103 (291)
T 3a5f_A 81 NTAASIAMSKWAESIGVDGLLVI 103 (291)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEE
T ss_pred cHHHHHHHHHHHHhcCCCEEEEc
Confidence 5677889999999 99999884
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=88.00 E-value=1.8 Score=37.08 Aligned_cols=79 Identities=8% Similarity=-0.076 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-..+.-.++++.+.+.+ . .++||.+-+.
T Consensus 21 D~~~l~~lv~~li~~Gv~gl~v~Gt----------tGE~~~Lt~~Er~~v~~~~~~~~--------~-grvpviaGvg~~ 81 (292)
T 3daq_A 21 NLEALKAHVNFLLENNAQAIIVNGT----------TAESPTLTTDEKELILKTVIDLV--------D-KRVPVIAGTGTN 81 (292)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSG----------GGTGGGSCHHHHHHHHHHHHHHH--------T-TSSCEEEECCCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc----------ccccccCCHHHHHHHHHHHHHHh--------C-CCCcEEEeCCcc
Confidence 666777777765 558999977433 34444345555556777666541 1 3678888765
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+.
T Consensus 82 ~t~~ai~la~~a~~~Gadavlv~ 104 (292)
T 3daq_A 82 DTEKSIQASIQAKALGADAIMLI 104 (292)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEE
T ss_pred cHHHHHHHHHHHHHcCCCEEEEC
Confidence 5678899999999 99999884
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=87.97 E-value=1.8 Score=38.57 Aligned_cols=73 Identities=10% Similarity=0.097 Sum_probs=53.3
Q ss_pred cCCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee
Q psy7344 123 GNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM 201 (240)
Q Consensus 123 g~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r 201 (240)
+.+++++.+.++.+ +.|+++|.|..|. ..++...++++++++++ +.++++.++..
T Consensus 147 ~~~~~~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~~~e~v~avR~a~---------G~d~~l~vDan 202 (391)
T 2qgy_A 147 KKDTNDYLRQIEKFYGKKYGGIKIYPML---------------DSLSISIQFVEKVREIV---------GDELPLMLDLA 202 (391)
T ss_dssp CCCHHHHHHHHHHHHHTTCSCEEECCCC---------------SSHHHHHHHHHHHHHHH---------CSSSCEEEECC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEccCC---------------ChHHHHHHHHHHHHHHh---------CCCCEEEEEcC
Confidence 46888888776655 5689999998762 11466667888888762 13567777765
Q ss_pred ----hhcHHHHHHHHhC-CCCeE
Q psy7344 202 ----VAKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 202 ----~~~~~~~~~~l~~-G~~~i 219 (240)
.++..++++.|++ |+++|
T Consensus 203 ~~~~~~~a~~~~~~l~~~~i~~i 225 (391)
T 2qgy_A 203 VPEDLDQTKSFLKEVSSFNPYWI 225 (391)
T ss_dssp CCSCHHHHHHHHHHHGGGCCSEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCeE
Confidence 4567899999999 99987
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=87.95 E-value=1.3 Score=40.66 Aligned_cols=104 Identities=10% Similarity=0.012 Sum_probs=60.4
Q ss_pred hhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhh--cccccccccCCHHHHHHHHHHh
Q psy7344 100 WPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAK--RGHYGAYLQDDWPLLTNLVYSP 177 (240)
Q Consensus 100 ~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~--~~g~G~~l~~~p~~i~~iv~~~ 177 (240)
++.++.+..... +.|+++. .+.+++ ++.++.+.|+|+|.++.|.-..... ..+.| ....+.+.++.+.+
T Consensus 266 ~e~i~~i~~~~p--~~pvi~g-~~~t~e---~a~~l~~~G~d~I~v~~~~G~~~~~~~~~~~g---~p~~~~l~~v~~~~ 336 (494)
T 1vrd_A 266 IETLEMIKADYP--DLPVVAG-NVATPE---GTEALIKAGADAVKVGVGPGSICTTRVVAGVG---VPQLTAVMECSEVA 336 (494)
T ss_dssp HHHHHHHHHHCT--TSCEEEE-EECSHH---HHHHHHHTTCSEEEECSSCSTTCHHHHHHCCC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC--CceEEeC-CcCCHH---HHHHHHHcCCCEEEEcCCCCccccccccCCCC---ccHHHHHHHHHHHH
Confidence 445555544331 3566553 123443 3334445699999996652100000 01111 24566666666654
Q ss_pred hhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 178 NMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 178 ~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
+. .++||.+-..+.+..+.++++..|||++.+ ||-
T Consensus 337 ~~------------~~ipvia~GGI~~~~di~kala~GAd~V~i-Gr~ 371 (494)
T 1vrd_A 337 RK------------YDVPIIADGGIRYSGDIVKALAAGAESVMV-GSI 371 (494)
T ss_dssp HT------------TTCCEEEESCCCSHHHHHHHHHTTCSEEEE-SHH
T ss_pred hh------------cCCCEEEECCcCCHHHHHHHHHcCCCEEEE-CHH
Confidence 33 467888877777888889888889999987 654
|
| >1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A* | Back alignment and structure |
|---|
Probab=87.95 E-value=1.5 Score=37.21 Aligned_cols=78 Identities=18% Similarity=0.167 Sum_probs=54.0
Q ss_pred CCHHHHHHHHH-HHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee-
Q psy7344 124 NDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM- 201 (240)
Q Consensus 124 ~d~~~~~~aa~-~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r- 201 (240)
.|.+...+.++ ++++|+|.||||.|- .....++.+++++..+++. .++|+|+-..
T Consensus 22 ~~~~~a~~~a~~~v~~GAdiIDIg~g~------------~~v~~~ee~~rvv~~i~~~-----------~~~pisIDT~~ 78 (262)
T 1f6y_A 22 RDPAPVQEWARRQEEGGARALDLNVGP------------AVQDKVSAMEWLVEVTQEV-----------SNLTLCLDSTN 78 (262)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEBCC----------------CHHHHHHHHHHHHHTT-----------CCSEEEEECSC
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCC------------CCCChHHHHHHHHHHHHHh-----------CCCeEEEeCCC
Confidence 46676666555 456799999999862 1235788888888888775 5778888765
Q ss_pred -------h----------------hcHHHHHHHHhC-CCCeEEEecc
Q psy7344 202 -------V----------------AKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 202 -------~----------------~~~~~~~~~l~~-G~~~itih~R 224 (240)
+ +...++++.+.+ |+..|.+|.+
T Consensus 79 ~~v~~aAl~a~~Ga~iINdvs~~~d~~~~~~~~~a~~~~~vvlmh~~ 125 (262)
T 1f6y_A 79 IKAIEAGLKKCKNRAMINSTNAEREKVEKLFPLAVEHGAALIGLTMN 125 (262)
T ss_dssp HHHHHHHHHHCSSCEEEEEECSCHHHHHHHHHHHHHTTCEEEEESCC
T ss_pred HHHHHHHHhhCCCCCEEEECCCCcccHHHHHHHHHHhCCcEEEEcCC
Confidence 0 112267777778 9999999974
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=87.92 E-value=0.066 Score=44.39 Aligned_cols=60 Identities=13% Similarity=0.063 Sum_probs=40.9
Q ss_pred CChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc---CCCEEEecCCCchhhhhcccccccccCCHHHHHHHH
Q psy7344 98 DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP---HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174 (240)
Q Consensus 98 ~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~---~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv 174 (240)
.+++++.++...+ ..|+++. +++.+..++.++++. |+|+|+++.+ ++.+|+.+.+++
T Consensus 180 ~~~~~~~~l~~~~---~ipvia~---GGI~~~~d~~~~~~~~~~Gad~v~vG~a--------------l~~~~~~~~~~~ 239 (244)
T 2y88_A 180 PNLDLLAGVADRT---DAPVIAS---GGVSSLDDLRAIATLTHRGVEGAIVGKA--------------LYARRFTLPQAL 239 (244)
T ss_dssp CCHHHHHHHHTTC---SSCEEEE---SCCCSHHHHHHHHTTGGGTEEEEEECHH--------------HHTTSSCHHHHH
T ss_pred CCHHHHHHHHHhC---CCCEEEE---CCCCCHHHHHHHHhhccCCCCEEEEcHH--------------HHCCCcCHHHHH
Confidence 3688888876543 4787766 666666677777776 8999998655 444555566666
Q ss_pred HHh
Q psy7344 175 YSP 177 (240)
Q Consensus 175 ~~~ 177 (240)
+.+
T Consensus 240 ~~~ 242 (244)
T 2y88_A 240 AAV 242 (244)
T ss_dssp HHT
T ss_pred HHh
Confidence 654
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=87.81 E-value=1.7 Score=38.22 Aligned_cols=79 Identities=9% Similarity=-0.098 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.-.++++.+.+.+ . .++||.+-+-
T Consensus 50 D~~~l~~lv~~li~~Gv~Gl~v~Gt----------TGE~~~Ls~eEr~~vi~~~ve~~--------~-grvpViaGvg~~ 110 (343)
T 2v9d_A 50 DKPGTAALIDDLIKAGVDGLFFLGS----------GGEFSQLGAEERKAIARFAIDHV--------D-RRVPVLIGTGGT 110 (343)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEESST----------TTTGGGSCHHHHHHHHHHHHHHH--------T-TSSCEEEECCSS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCcc----------ccChhhCCHHHHHHHHHHHHHHh--------C-CCCcEEEecCCC
Confidence 667777777766 458899877433 44444446666667777766641 1 2678887776
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+-
T Consensus 111 st~eai~la~~A~~~Gadavlv~ 133 (343)
T 2v9d_A 111 NARETIELSQHAQQAGADGIVVI 133 (343)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEC
Confidence 5677899999999 99999884
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=87.79 E-value=2.2 Score=37.01 Aligned_cols=77 Identities=10% Similarity=0.005 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-..+.-.++++.+.+. + -++||.+=+.
T Consensus 27 D~~~l~~lv~~li~~Gv~Gl~v~Gt----------TGE~~~Lt~~Er~~v~~~~v~~--------~--grvpViaGvg~~ 86 (313)
T 3dz1_A 27 DDVSIDRLTDFYAEVGCEGVTVLGI----------LGEAPKLDAAEAEAVATRFIKR--------A--KSMQVIVGVSAP 86 (313)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESTG----------GGTGGGSCHHHHHHHHHHHHHH--------C--TTSEEEEECCCS
T ss_pred CHHHHHHHHHHHHHCCCCEEEeCcc----------CcChhhCCHHHHHHHHHHHHHH--------c--CCCcEEEecCCC
Confidence 667777877776 558999977433 4444444566666777777665 1 2678888766
Q ss_pred -hhcHHHHHHHHhC-CCCeEEE
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~iti 221 (240)
..+++++++.+++ |+|++.+
T Consensus 87 ~t~~ai~la~~A~~~Gadavlv 108 (313)
T 3dz1_A 87 GFAAMRRLARLSMDAGAAGVMI 108 (313)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEE
Confidence 5678899999999 9999988
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=87.72 E-value=1.9 Score=37.54 Aligned_cols=79 Identities=5% Similarity=-0.087 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.-.++++.+.+.+ . .++||.+=+.
T Consensus 41 D~~~l~~li~~li~~Gv~Gl~v~Gt----------TGE~~~Ls~~Er~~v~~~~v~~~--------~-grvpViaGvg~~ 101 (315)
T 3si9_A 41 DEKAFCNFVEWQITQGINGVSPVGT----------TGESPTLTHEEHKRIIELCVEQV--------A-KRVPVVAGAGSN 101 (315)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSST----------TTTGGGSCHHHHHHHHHHHHHHH--------T-TSSCBEEECCCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCcc----------ccCccccCHHHHHHHHHHHHHHh--------C-CCCcEEEeCCCC
Confidence 677777877776 558999976433 44444445666667777666641 1 2578888666
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+.
T Consensus 102 st~~ai~la~~A~~~Gadavlv~ 124 (315)
T 3si9_A 102 STSEAVELAKHAEKAGADAVLVV 124 (315)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEC
Confidence 5678899999999 99999884
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=87.64 E-value=0.83 Score=40.72 Aligned_cols=101 Identities=16% Similarity=-0.013 Sum_probs=54.7
Q ss_pred hhhHHHhhhcccCCCCceeE-EeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 100 WPLLTELGFKTRSHMCGHSL-MFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 100 ~eli~~i~~~~~~~~~pviv-qi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
|+.++.++.... +.|+++ ++ .+++ ++.++.+.|+|+|.++.|.-.....+.-.|.. ....+.+.+++
T Consensus 129 ~e~I~~ir~~~~--~~~Vi~G~V--~T~e---~A~~a~~aGaD~I~Vg~g~G~~~~tr~~~g~g-~p~l~aI~~~~---- 196 (361)
T 3r2g_A 129 GKTLKSLRQLLG--SRCIMAGNV--ATYA---GADYLASCGADIIKAGIGGGSVCSTRIKTGFG-VPMLTCIQDCS---- 196 (361)
T ss_dssp HHHHHHHHHHHT--TCEEEEEEE--CSHH---HHHHHHHTTCSEEEECCSSSSCHHHHHHHCCC-CCHHHHHHHHT----
T ss_pred HHHHHHHHHhcC--CCeEEEcCc--CCHH---HHHHHHHcCCCEEEEcCCCCcCccccccCCcc-HHHHHHHHHHH----
Confidence 455555554321 356766 33 3333 34444556999999965510111111000111 12233333222
Q ss_pred hccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 179 MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 179 ~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
+. .. ||.+-..+.+..+.+++|..|||++.+ ||-
T Consensus 197 ~~-----------~~-PVIAdGGI~~~~di~kALa~GAd~V~i-Gr~ 230 (361)
T 3r2g_A 197 RA-----------DR-SIVADGGIKTSGDIVKALAFGADFVMI-GGM 230 (361)
T ss_dssp TS-----------SS-EEEEESCCCSHHHHHHHHHTTCSEEEE-SGG
T ss_pred Hh-----------CC-CEEEECCCCCHHHHHHHHHcCCCEEEE-ChH
Confidence 22 22 787777787888899999889999999 664
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=87.55 E-value=2.2 Score=37.13 Aligned_cols=78 Identities=8% Similarity=-0.165 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-..+.-.++++.+.+.+ . .++||.+=+.
T Consensus 30 D~~~l~~lv~~li~~Gv~gl~v~Gt----------TGE~~~Ls~~Er~~v~~~~~~~~--------~-grvpviaGvg~~ 90 (318)
T 3qfe_A 30 DLASQERYYAYLARSGLTGLVILGT----------NAEAFLLTREERAQLIATARKAV--------G-PDFPIMAGVGAH 90 (318)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEESSG----------GGTGGGSCHHHHHHHHHHHHHHH--------C-TTSCEEEECCCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCcc----------ccChhhCCHHHHHHHHHHHHHHh--------C-CCCcEEEeCCCC
Confidence 667777777776 458999977433 34444345555567777666641 1 3678888666
Q ss_pred -hhcHHHHHHHHhC-CCCeEEE
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~iti 221 (240)
..+++++++.+++ |+|++.+
T Consensus 91 ~t~~ai~la~~a~~~Gadavlv 112 (318)
T 3qfe_A 91 STRQVLEHINDASVAGANYVLV 112 (318)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEE
Confidence 5678899999999 9999988
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=87.27 E-value=1.4 Score=38.04 Aligned_cols=79 Identities=6% Similarity=-0.045 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.-.++++.+.+.+ . .++||.+-+.
T Consensus 23 D~~~l~~lv~~li~~Gv~gl~v~Gt----------tGE~~~Ls~~Er~~v~~~~~~~~--------~-grvpviaGvg~~ 83 (300)
T 3eb2_A 23 RADVMGRLCDDLIQAGVHGLTPLGS----------TGEFAYLGTAQREAVVRATIEAA--------Q-RRVPVVAGVAST 83 (300)
T ss_dssp CHHHHHHHHHHHHHTTCSCBBTTSG----------GGTGGGCCHHHHHHHHHHHHHHH--------T-TSSCBEEEEEES
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc----------ccCccccCHHHHHHHHHHHHHHh--------C-CCCcEEEeCCCC
Confidence 667777777776 558888866322 44444445666567777766641 1 3678887666
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+-
T Consensus 84 ~t~~ai~la~~a~~~Gadavlv~ 106 (300)
T 3eb2_A 84 SVADAVAQAKLYEKLGADGILAI 106 (300)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEc
Confidence 5678899999999 99999883
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* | Back alignment and structure |
|---|
Probab=87.24 E-value=3.2 Score=37.41 Aligned_cols=97 Identities=14% Similarity=0.043 Sum_probs=61.9
Q ss_pred CceeEEeecCCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhccc----------cc-------ccccCCHHHHHHHHHH
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGH----------YG-------AYLQDDWPLLTNLVYS 176 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g----------~G-------~~l~~~p~~i~~iv~~ 176 (240)
.|+...+.+.+++++.+.++.. ++|+..+-+..|+|...+..+. .| ....++++...+++++
T Consensus 133 v~~y~~~~~~~~e~~~~~a~~~~~~Gf~~~K~k~G~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~v~a 212 (418)
T 3r4e_A 133 IMVYGHANGSDIAETVEAVGHYIDMGYKAIRAQTGVPGIKDAYGVGRGKLYYEPADASLPSVTGWDTRKALNYVPKLFEE 212 (418)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEECCTTC------------------CCCCEEEECHHHHHHHHHHHHHH
T ss_pred eeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccccccccccccccccccccccccccccccchhHHHHHHHHHHH
Confidence 5665556678899888766654 6799999999998753221100 00 0001124556677888
Q ss_pred hhhccccccCCCCCCCCeeeEEeee----hhcHHHHHHHHhC-CCCeEE
Q psy7344 177 PNMVHFVIAEPHCDGNDINIGCPQM----VAKRGHYGAYLQD-DWPLLT 220 (240)
Q Consensus 177 ~~~~~~~i~~~~~~~~~~pvsvK~r----~~~~~~~~~~l~~-G~~~it 220 (240)
+++++ +.++++.+... .++.+++++.|++ |+++|-
T Consensus 213 vR~a~---------G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE 252 (418)
T 3r4e_A 213 LRKTY---------GFDHHLLHDGHHRYTPQEAANLGKMLEPYQLFWLE 252 (418)
T ss_dssp HHHHH---------CSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEE
T ss_pred HHHHc---------CCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEEE
Confidence 88863 13567776655 4567899999999 999883
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=87.21 E-value=1.6 Score=38.55 Aligned_cols=104 Identities=11% Similarity=-0.000 Sum_probs=59.5
Q ss_pred hhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchh-hhhcccccccccCCHHHHHHHHHHhh
Q psy7344 100 WPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQM-VAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 100 ~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~-~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
|+.++++..... +.|+++. +..+..++.+..+.|+|+|.+..| |-. ...+.-.|. .......+.++.+...
T Consensus 149 ~~~i~~lr~~~~--~~~vi~g----~v~t~e~A~~a~~aGaD~I~v~~g-~G~~~~~r~~~g~-~~p~~~~l~~v~~~~~ 220 (351)
T 2c6q_A 149 VEFVKDVRKRFP--QHTIMAG----NVVTGEMVEELILSGADIIKVGIG-PGSVCTTRKKTGV-GYPQLSAVMECADAAH 220 (351)
T ss_dssp HHHHHHHHHHCT--TSEEEEE----EECSHHHHHHHHHTTCSEEEECSS-CSTTBCHHHHHCB-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCeEEEE----eCCCHHHHHHHHHhCCCEEEECCC-CCcCcCccccCCC-CccHHHHHHHHHHHHh
Confidence 344555544321 3566643 122233444555679999999654 210 000000010 1234556666666543
Q ss_pred hccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEecc
Q psy7344 179 MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224 (240)
Q Consensus 179 ~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R 224 (240)
. .++||.+-..+.+-.++++++..||+++.+ ||
T Consensus 221 ~------------~~ipvIa~GGI~~g~di~kAlalGA~~V~v-G~ 253 (351)
T 2c6q_A 221 G------------LKGHIISDGGCSCPGDVAKAFGAGADFVML-GG 253 (351)
T ss_dssp H------------TTCEEEEESCCCSHHHHHHHHHTTCSEEEE-ST
T ss_pred h------------cCCcEEEeCCCCCHHHHHHHHHcCCCceec-cH
Confidence 3 357888877788888999999889999988 55
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.20 E-value=1.8 Score=37.15 Aligned_cols=80 Identities=10% Similarity=-0.089 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.-.++++.+.+.+ . .++||.+-+-
T Consensus 19 D~~~l~~lv~~li~~Gv~gl~~~Gt----------tGE~~~Ls~~Er~~v~~~~~~~~--------~-gr~pviaGvg~~ 79 (292)
T 2vc6_A 19 DEVALHDLVEWQIEEGSFGLVPCGT----------TGESPTLSKSEHEQVVEITIKTA--------N-GRVPVIAGAGSN 79 (292)
T ss_dssp CHHHHHHHHHHHHHTTCSEEETTSG----------GGTGGGSCHHHHHHHHHHHHHHH--------T-TSSCBEEECCCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc----------ccChhhCCHHHHHHHHHHHHHHh--------C-CCCcEEEecCCc
Confidence 777788887776 558899876332 44444446666667777766641 1 2578887776
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih~ 223 (240)
..+++++++.+++ |+|++.+-.
T Consensus 80 ~t~~ai~la~~A~~~Gadavlv~~ 103 (292)
T 2vc6_A 80 STAEAIAFVRHAQNAGADGVLIVS 103 (292)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcC
Confidence 4677889999999 999998843
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=86.99 E-value=1.9 Score=37.29 Aligned_cols=79 Identities=9% Similarity=-0.011 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.=.++++.+.+.+ . .++||.+-+.
T Consensus 27 D~~~l~~lv~~li~~Gv~gl~v~Gt----------TGE~~~Ls~~Er~~v~~~~~~~~--------~-grvpviaGvg~~ 87 (309)
T 3fkr_A 27 DLASQKRAVDFMIDAGSDGLCILAN----------FSEQFAITDDERDVLTRTILEHV--------A-GRVPVIVTTSHY 87 (309)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEESSG----------GGTGGGSCHHHHHHHHHHHHHHH--------T-TSSCEEEECCCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc----------ccCcccCCHHHHHHHHHHHHHHh--------C-CCCcEEEecCCc
Confidence 667777777776 558899877333 44444445555567777666641 1 3678888776
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+.
T Consensus 88 ~t~~ai~la~~A~~~Gadavlv~ 110 (309)
T 3fkr_A 88 STQVCAARSLRAQQLGAAMVMAM 110 (309)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEC
T ss_pred hHHHHHHHHHHHHHcCCCEEEEc
Confidence 5678899999999 99999884
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A | Back alignment and structure |
|---|
Probab=86.97 E-value=2.2 Score=38.75 Aligned_cols=85 Identities=11% Similarity=0.035 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee-
Q psy7344 124 NDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM- 201 (240)
Q Consensus 124 ~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r- 201 (240)
.+++++.+.++.. +.|+..|-++.|+|.... .|.. ....+++...++++++++++ |.++++.+...
T Consensus 145 ~~~e~~~~~a~~~~~~Gf~~iKlk~g~~~~~~--~G~~-~~~~~~~~d~e~v~avR~av---------G~d~~L~vDan~ 212 (433)
T 3rcy_A 145 TSADMAAESAADCVARGYTAVKFDPAGPYTLR--GGHM-PAMTDISLSVEFCRKIRAAV---------GDKADLLFGTHG 212 (433)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCSCCCBTT--CCBC-CCHHHHHHHHHHHHHHHHHH---------TTSSEEEECCCS
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCcccc--cCCC-cchhhHHHHHHHHHHHHHHh---------CCCCeEEEeCCC
Confidence 5788887766654 679999999999886421 1111 11124566667788888763 13566766554
Q ss_pred ---hhcHHHHHHHHhC-CCCeEE
Q psy7344 202 ---VAKRGHYGAYLQD-DWPLLT 220 (240)
Q Consensus 202 ---~~~~~~~~~~l~~-G~~~it 220 (240)
.++..++++.|++ |+++|-
T Consensus 213 ~~t~~~A~~~~~~Le~~~i~~iE 235 (433)
T 3rcy_A 213 QFTTAGAIRLGQAIEPYSPLWYE 235 (433)
T ss_dssp CBCHHHHHHHHHHHGGGCCSEEE
T ss_pred CCCHHHHHHHHHHhhhcCCCEEE
Confidence 4567889999999 999883
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A | Back alignment and structure |
|---|
Probab=86.86 E-value=2.5 Score=37.12 Aligned_cols=80 Identities=5% Similarity=-0.105 Sum_probs=56.4
Q ss_pred CceeEEeecCCHHHHHHHHHH-HccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCC
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGND 193 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~-le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~ 193 (240)
.|+...+...+++++.+.++. ++.|+..+.+..|| +++.-.+.++++++++ +.+
T Consensus 130 v~~~~~~~~~~~~~~~~~a~~~~~~G~~~~K~K~G~----------------~~~~d~~~v~avR~~~---------g~~ 184 (356)
T 3ro6_B 130 LPTSVTIGIKPVEETLAEAREHLALGFRVLKVKLCG----------------DEEQDFERLRRLHETL---------AGR 184 (356)
T ss_dssp EEBCEEECSCCHHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHHHHH---------TTS
T ss_pred eeeeEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeCC----------------CHHHHHHHHHHHHHHh---------CCC
Confidence 455566666788888776655 46789999998884 3445556677777762 135
Q ss_pred eeeEEeee----hhcHHHHHHHHhC-CCCeE
Q psy7344 194 INIGCPQM----VAKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 194 ~pvsvK~r----~~~~~~~~~~l~~-G~~~i 219 (240)
+++.+... .++..++++.|++ |+++|
T Consensus 185 ~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i 215 (356)
T 3ro6_B 185 AVVRVDPNQSYDRDGLLRLDRLVQELGIEFI 215 (356)
T ss_dssp SEEEEECTTCCCHHHHHHHHHHHHHTTCCCE
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 56666655 3567889999999 99998
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=86.85 E-value=2.1 Score=38.12 Aligned_cols=80 Identities=10% Similarity=0.050 Sum_probs=54.6
Q ss_pred CceeEEeecCCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCC
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGND 193 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~ 193 (240)
.|+...+...+++.+.+.++.+ +.|+++|.+..|. +++...++++++++++ +.+
T Consensus 135 vp~~~~~g~~~~e~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~~~e~v~avR~a~---------g~d 189 (397)
T 2qde_A 135 IPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGG----------------PLKADIAMVAEVRRAV---------GDD 189 (397)
T ss_dssp EEBCEECCCSCHHHHHHHHHHHHHHTCSCEEEECCS----------------CHHHHHHHHHHHHHHH---------CTT
T ss_pred cceEEECCCCCHHHHHHHHHHHHHhhhhheeecccC----------------CHHHHHHHHHHHHHhh---------CCC
Confidence 4554444336888887766655 5699999997772 4555567777777762 134
Q ss_pred eeeEEeee----hhcHHHHHHHHhC-CCCeE
Q psy7344 194 INIGCPQM----VAKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 194 ~pvsvK~r----~~~~~~~~~~l~~-G~~~i 219 (240)
+++.+... .++..++++.|++ |+++|
T Consensus 190 ~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i 220 (397)
T 2qde_A 190 VDLFIDINGAWTYDQALTTIRALEKYNLSKI 220 (397)
T ss_dssp SCEEEECTTCCCHHHHHHHHHHHGGGCCSCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 56665544 3567889999999 99987
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=86.81 E-value=1.7 Score=34.98 Aligned_cols=36 Identities=8% Similarity=0.048 Sum_probs=30.5
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGC 149 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gC 149 (240)
..|++.+|.+.|.+++.+.++.+.+ |++.|.+...+
T Consensus 6 ~~~i~~~i~~~d~~~~~~~~~~~~~~G~~~i~l~~~~ 42 (212)
T 2v82_A 6 KLPLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNS 42 (212)
T ss_dssp SSCEEEECTTCCHHHHHHHHHHHHHHTCCEEEEETTS
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4689999999999999998888865 79999987664
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=86.55 E-value=2 Score=36.65 Aligned_cols=76 Identities=18% Similarity=0.126 Sum_probs=52.3
Q ss_pred CHHHHHHHHH-HHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh-
Q psy7344 125 DSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV- 202 (240)
Q Consensus 125 d~~~~~~aa~-~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~- 202 (240)
|.+...+.++ ++++|+|.||||.+-+ .-..++.+..+++.+++. .++|+++-..-
T Consensus 32 ~~~~a~~~a~~~v~~GAdiIDIg~~s~------------~~eE~~rv~~vi~~l~~~-----------~~~pisIDT~~~ 88 (271)
T 2yci_X 32 DPRPIQEWARRQAEKGAHYLDVNTGPT------------ADDPVRVMEWLVKTIQEV-----------VDLPCCLDSTNP 88 (271)
T ss_dssp CCHHHHHHHHHHHHTTCSEEEEECCSC------------SSCHHHHHHHHHHHHHHH-----------CCCCEEEECSCH
T ss_pred CHHHHHHHHHHHHHCCCCEEEEcCCcC------------chhHHHHHHHHHHHHHHh-----------CCCeEEEeCCCH
Confidence 4555555444 4567999999998831 224688888888888876 56788776550
Q ss_pred -----------------------hcHHHHHHHHhC-CCCeEEEec
Q psy7344 203 -----------------------AKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 203 -----------------------~~~~~~~~~l~~-G~~~itih~ 223 (240)
++..++++.+.+ |+..|.+|.
T Consensus 89 ~v~~aal~a~~Ga~iINdvs~~~d~~~~~~~~~a~~~~~vv~m~~ 133 (271)
T 2yci_X 89 DAIEAGLKVHRGHAMINSTSADQWKMDIFFPMAKKYEAAIIGLTM 133 (271)
T ss_dssp HHHHHHHHHCCSCCEEEEECSCHHHHHHHHHHHHHHTCEEEEESC
T ss_pred HHHHHHHHhCCCCCEEEECCCCccccHHHHHHHHHcCCCEEEEec
Confidence 112456666777 888888886
|
| >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* | Back alignment and structure |
|---|
Probab=86.45 E-value=1.5 Score=35.43 Aligned_cols=34 Identities=3% Similarity=-0.205 Sum_probs=28.4
Q ss_pred CCeeeEEeee--hhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 192 NDINIGCPQM--VAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 192 ~~~pvsvK~r--~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
..+++-+|+- ..+...+++.+.+ |+|.+|+|+=.
T Consensus 52 ~~v~~D~kl~DI~~t~~~~v~~~~~~Gad~vtvh~~~ 88 (208)
T 2czd_A 52 VEIIADLKLADIPNTNRLIARKVFGAGADYVIVHTFV 88 (208)
T ss_dssp CEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTT
T ss_pred CEEEEEeeeCchHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 5678899998 5666788888888 99999999854
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=86.29 E-value=2.4 Score=36.73 Aligned_cols=79 Identities=8% Similarity=-0.135 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.=.++++.+.+.+ . -++||.+-+.
T Consensus 31 D~~~l~~lv~~li~~Gv~Gl~v~Gt----------TGE~~~Ls~eEr~~v~~~~v~~~--------~-grvpViaGvg~~ 91 (316)
T 3e96_A 31 DWHHYKETVDRIVDNGIDVIVPCGN----------TSEFYALSLEEAKEEVRRTVEYV--------H-GRALVVAGIGYA 91 (316)
T ss_dssp CHHHHHHHHHHHHTTTCCEECTTSG----------GGTGGGSCHHHHHHHHHHHHHHH--------T-TSSEEEEEECSS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCcc----------ccCcccCCHHHHHHHHHHHHHHh--------C-CCCcEEEEeCcC
Confidence 667777777776 558899866332 44444445655567777666541 1 2578877665
Q ss_pred hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 ~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+-
T Consensus 92 t~~ai~la~~A~~~Gadavlv~ 113 (316)
T 3e96_A 92 TSTAIELGNAAKAAGADAVMIH 113 (316)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHHHhcCCCEEEEc
Confidence 5667889999999 99999883
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=86.14 E-value=1.4 Score=38.99 Aligned_cols=74 Identities=7% Similarity=-0.148 Sum_probs=49.1
Q ss_pred CceeEEeecCCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCC
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGND 193 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~ 193 (240)
.|+...+...+++.+.+.++.+ +.|++.|.++.||| +++...++++++++++ +.+
T Consensus 135 v~~~~~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~---------g~~ 190 (378)
T 2qdd_A 135 VPINSSISTGTPDQMLGLIAEAAAQGYRTHSAKIGGS---------------DPAQDIARIEAISAGL---------PDG 190 (378)
T ss_dssp EEBEEEECSCCHHHHHHHHHHHHHHTCCEEEEECCSS---------------CHHHHHHHHHHHHHSC---------CTT
T ss_pred CceEEEecCCCHHHHHHHHHHHHHHhhhheeecCCCC---------------ChHHHHHHHHHHHHHh---------CCC
Confidence 4555555457888887776655 56999999998874 4566667888888862 135
Q ss_pred eeeEEeee--h--hcHHHHHHHH
Q psy7344 194 INIGCPQM--V--AKRGHYGAYL 212 (240)
Q Consensus 194 ~pvsvK~r--~--~~~~~~~~~l 212 (240)
+++.++.. + ++..++++.|
T Consensus 191 ~~l~vDan~~~~~~~a~~~~~~l 213 (378)
T 2qdd_A 191 HRVTFDVNRAWTPAIAVEVLNSV 213 (378)
T ss_dssp CEEEEECTTCCCHHHHHHHHTSC
T ss_pred CEEEEeCCCCCCHHHHHHHHHHh
Confidence 67777765 3 3344555544
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=86.08 E-value=1.1 Score=37.08 Aligned_cols=74 Identities=11% Similarity=-0.048 Sum_probs=45.6
Q ss_pred HHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHH
Q psy7344 128 NLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRG 206 (240)
Q Consensus 128 ~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~ 206 (240)
++.+.++.+++ |++.|-+.-- ...+.+ -..+++.++++.+ . .++||.+...+.+..
T Consensus 36 ~~~~~a~~~~~~G~~~i~v~d~------~~~~~~--~~~~~~~i~~i~~----~-----------~~ipvi~~Ggi~~~~ 92 (247)
T 3tdn_A 36 LLRDWVVEVEKRGAGEILLTSI------DRDGTK--SGYDTEMIRFVRP----L-----------TTLPIIASGGAGKME 92 (247)
T ss_dssp EHHHHHHHHHHTTCSEEEEEET------TTTTCS--SCCCHHHHHHHGG----G-----------CCSCEEEESCCCSHH
T ss_pred CHHHHHHHHHHcCCCEEEEEec------CcccCC--CcccHHHHHHHHH----h-----------CCCCEEEeCCCCCHH
Confidence 56778888765 7888865321 001111 1357776665554 3 577898888776666
Q ss_pred HHHHHHhCCCCeEEEeccc
Q psy7344 207 HYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 207 ~~~~~l~~G~~~itih~R~ 225 (240)
++.+.++.|+|.+.+ ||.
T Consensus 93 ~~~~~l~~Gad~V~i-g~~ 110 (247)
T 3tdn_A 93 HFLEAFLRGADKVSI-NTA 110 (247)
T ss_dssp HHHHHHHTTCSEECC-SHH
T ss_pred HHHHHHHcCCCeeeh-hhH
Confidence 655555448888877 553
|
| >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A | Back alignment and structure |
|---|
Probab=86.06 E-value=3 Score=34.26 Aligned_cols=86 Identities=12% Similarity=-0.072 Sum_probs=51.9
Q ss_pred CceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCe
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDI 194 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~ 194 (240)
.++++-+--.+.++..+.++.+...++.|.++.+ .-. . + -|+.++++.+... . ..+
T Consensus 6 ~~livAlD~~~~~~a~~~~~~~~~~~~~ikvg~~--lf~--~--~------G~~~v~~l~~~~p-~-----------~~i 61 (221)
T 3exr_A 6 PNLQVALDHSNLKGAITAAVSVGNEVDVIEAGTV--CLL--Q--V------GSELVEVLRSLFP-D-----------KII 61 (221)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHGGGCSEEEECHH--HHH--H--H------CTHHHHHHHHHCT-T-----------SEE
T ss_pred CCEEEEeCCCCHHHHHHHHHhhCCCceEEEECHH--HHH--h--c------CHHHHHHHHHhCC-C-----------CcE
Confidence 3466665445667667777776666889999554 221 1 1 2344544443210 1 456
Q ss_pred eeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 195 NIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 195 pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.+-+|+- +...-+++.+.+ |+|.+|+|+=.
T Consensus 62 flDlKl~-Dip~t~~~~~~~~Gad~vtVH~~~ 92 (221)
T 3exr_A 62 VADTKCA-DAGGTVAKNNAVRGADWMTCICSA 92 (221)
T ss_dssp EEEEEEC-SCHHHHHHHHHTTTCSEEEEETTS
T ss_pred EEEEEee-ccHHHHHHHHHHcCCCEEEEeccC
Confidence 7778887 333344566788 99999999853
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=85.60 E-value=1.2 Score=41.43 Aligned_cols=79 Identities=14% Similarity=0.151 Sum_probs=51.3
Q ss_pred HHHHHHccCCCEEEecCCCchhhhhc--ccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHH
Q psy7344 131 EAAKLAEPHCDGIDINIGCPQMVAKR--GHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHY 208 (240)
Q Consensus 131 ~aa~~le~~~d~Idin~gCP~~~~~~--~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~ 208 (240)
.+.+..+.|+|+|.++.|.-...+.+ .|.| ..+...+.++.+.+++ .++||.+-..+.+..++
T Consensus 310 ~a~~~~~aGad~i~vg~g~gsi~~~~~~~g~g---~p~~~~l~~v~~~~~~------------~~iPVIa~GGI~~~~di 374 (511)
T 3usb_A 310 ATKALIEAGANVVKVGIGPGSICTTRVVAGVG---VPQLTAVYDCATEARK------------HGIPVIADGGIKYSGDM 374 (511)
T ss_dssp HHHHHHHHTCSEEEECSSCSTTCCHHHHHCCC---CCHHHHHHHHHHHHHT------------TTCCEEEESCCCSHHHH
T ss_pred HHHHHHHhCCCEEEECCCCccccccccccCCC---CCcHHHHHHHHHHHHh------------CCCcEEEeCCCCCHHHH
Confidence 33344455999999876521111111 1222 3566777777766554 35788887778888899
Q ss_pred HHHHhCCCCeEEEeccc
Q psy7344 209 GAYLQDDWPLLTELGKM 225 (240)
Q Consensus 209 ~~~l~~G~~~itih~R~ 225 (240)
++++..||+++.+ ||-
T Consensus 375 ~kala~GA~~V~v-Gs~ 390 (511)
T 3usb_A 375 VKALAAGAHVVML-GSM 390 (511)
T ss_dssp HHHHHTTCSEEEE-STT
T ss_pred HHHHHhCchhhee-cHH
Confidence 9998889999998 653
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=85.48 E-value=1.1 Score=36.73 Aligned_cols=67 Identities=13% Similarity=0.036 Sum_probs=43.4
Q ss_pred HH--HHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEE--ee
Q psy7344 126 SK--NLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGC--PQ 200 (240)
Q Consensus 126 ~~--~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsv--K~ 200 (240)
++ ++.+.++.+++ |+++|.++ .|+.+ +.+++. +++|+.. |.
T Consensus 33 ~~~~~~~~~a~~~~~~G~~~i~~~-------------------~~~~i----~~i~~~-----------~~~p~i~~~~~ 78 (234)
T 1yxy_A 33 ETGGIMPLMAKAAQEAGAVGIRAN-------------------SVRDI----KEIQAI-----------TDLPIIGIIKK 78 (234)
T ss_dssp TTCCSHHHHHHHHHHHTCSEEEEE-------------------SHHHH----HHHHTT-----------CCSCEEEECBC
T ss_pred CccchHHHHHHHHHHCCCcEeecC-------------------CHHHH----HHHHHh-----------CCCCEEeeEcC
Confidence 66 77888888765 78888764 24444 344444 5667631 11
Q ss_pred -------ehhcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 201 -------MVAKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 201 -------r~~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
-+....+.++.+.+ |+|.|.+|....
T Consensus 79 ~~~~~~~~i~~~~~~i~~~~~~Gad~V~l~~~~~ 112 (234)
T 1yxy_A 79 DYPPQEPFITATMTEVDQLAALNIAVIAMDCTKR 112 (234)
T ss_dssp CCTTSCCCBSCSHHHHHHHHTTTCSEEEEECCSS
T ss_pred CCCccccccCChHHHHHHHHHcCCCEEEEccccc
Confidence 12345677888888 999999998653
|
| >4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* | Back alignment and structure |
|---|
Probab=85.46 E-value=3.4 Score=36.75 Aligned_cols=79 Identities=9% Similarity=-0.001 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.=.++++.+.+.+ . .++||.+-+-
T Consensus 78 D~~al~~lv~~li~~Gv~Gl~v~GT----------TGE~~~Ls~eEr~~vi~~~ve~~--------~-grvpViaGvg~~ 138 (360)
T 4dpp_A 78 DLEAYDDLVNIQIQNGAEGVIVGGT----------TGEGQLMSWDEHIMLIGHTVNCF--------G-GSIKVIGNTGSN 138 (360)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESST----------TTTGGGSCHHHHHHHHHHHHHHH--------T-TTSEEEEECCCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccc----------ccChhhCCHHHHHHHHHHHHHHh--------C-CCCeEEEecCCC
Confidence 667777777766 558999987433 34444334555556666655541 1 3578887665
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+.
T Consensus 139 st~eai~la~~A~~~Gadavlvv 161 (360)
T 4dpp_A 139 STREAIHATEQGFAVGMHAALHI 161 (360)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEc
Confidence 5677889999999 99999884
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=84.77 E-value=3.2 Score=35.24 Aligned_cols=88 Identities=9% Similarity=0.007 Sum_probs=54.4
Q ss_pred eeEEeecC--CHHHHHHHHHHHccCCCEEEecCCCchhh------------hhcccccccccCCHHHHHHHHHHhhhccc
Q psy7344 117 HSLMFCGN--DSKNLTEAAKLAEPHCDGIDINIGCPQMV------------AKRGHYGAYLQDDWPLLTNLVYSPNMVHF 182 (240)
Q Consensus 117 vivqi~g~--d~~~~~~aa~~le~~~d~Idin~gCP~~~------------~~~~g~G~~l~~~p~~i~~iv~~~~~~~~ 182 (240)
++.=|..+ +.+.+.+.++.+++++|+|+|+.--..+. +...| -+.+.+-++++.+++.
T Consensus 18 li~~i~~GdP~~~~~~~~~~~l~~~aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G------~~~~~~~~~v~~ir~~-- 89 (271)
T 1ujp_A 18 LIPYLTAGFPSREGFLQAVEEVLPYADLLEIGLPYSDPLGDGPVIQRASELALRKG------MSVQGALELVREVRAL-- 89 (271)
T ss_dssp EEEEEETTSSCHHHHHHHHHHHGGGCSSEEEECCCCC----CHHHHHHHHHHHHTT------CCHHHHHHHHHHHHHH--
T ss_pred EEEEecCCCCChHHHHHHHHHHHhcCCEEEECCCCCCcccccHHHHHHHHHHHHcC------CCHHHHHHHHHHHHhc--
Confidence 44444444 55677888888866699999964211010 01111 2445555777777776
Q ss_pred cccCCCCCCCCeeeEEeeehh-----cHHHHHHHHhC-CCCeEEE
Q psy7344 183 VIAEPHCDGNDINIGCPQMVA-----KRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 183 ~i~~~~~~~~~~pvsvK~r~~-----~~~~~~~~l~~-G~~~iti 221 (240)
.++|+.+=.-++ -+..+++.+.+ |+|++.+
T Consensus 90 ---------~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv 125 (271)
T 1ujp_A 90 ---------TEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVIL 125 (271)
T ss_dssp ---------CCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEEC
T ss_pred ---------CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEe
Confidence 577888822122 34788899999 9998876
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=84.40 E-value=5.9 Score=33.74 Aligned_cols=76 Identities=13% Similarity=-0.080 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.-.++++.+.+. ..- |.+=+.
T Consensus 18 D~~~l~~lv~~li~~Gv~gl~v~Gt----------TGE~~~Ls~eEr~~v~~~~~~~-----------~~g-ViaGvg~~ 75 (288)
T 2nuw_A 18 NVDALKTHAKNLLEKGIDAIFVNGT----------TGLGPALSKDEKRQNLNALYDV-----------THK-LIFQVGSL 75 (288)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEETST----------TTTGGGSCHHHHHHHHHHHTTT-----------CSC-EEEECCCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc----------ccChhhCCHHHHHHHHHHHHHH-----------hCC-eEEeeCCC
Confidence 677777877765 558999887443 4444444666666888877765 222 554444
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+-
T Consensus 76 ~t~~ai~la~~A~~~Gadavlv~ 98 (288)
T 2nuw_A 76 NLNDVMELVKFSNEMDILGVSSH 98 (288)
T ss_dssp CHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEc
Confidence 5678899999999 99999883
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=84.38 E-value=4.7 Score=34.39 Aligned_cols=96 Identities=7% Similarity=-0.053 Sum_probs=59.7
Q ss_pred CCceeEEee---cCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCC
Q psy7344 114 MCGHSLMFC---GNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHC 189 (240)
Q Consensus 114 ~~pvivqi~---g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~ 189 (240)
+.|+++-+- |++++...+.++.+++ |+.+|.|-=+-. + .|..+ .+.+...+-+++++++-..
T Consensus 76 ~~pviaD~d~Gyg~~~~~~~~~v~~l~~aGaagv~iED~~~-----~--~~k~l-~~~~e~~~~I~aa~~a~~~------ 141 (275)
T 2ze3_A 76 AIPVNADIEAGYGHAPEDVRRTVEHFAALGVAGVNLEDATG-----L--TPTEL-YDLDSQLRRIEAARAAIDA------ 141 (275)
T ss_dssp SSCEEEECTTCSSSSHHHHHHHHHHHHHTTCSEEEEECBCS-----S--SSSCB-CCHHHHHHHHHHHHHHHHH------
T ss_pred CCCEEeecCCCCCCCHHHHHHHHHHHHHcCCcEEEECCCcC-----C--CCCcc-CCHHHHHHHHHHHHHhHhh------
Confidence 468888773 2478888887777755 899998876632 1 12333 5555555555555554100
Q ss_pred CCCCeeeEEeeeh---------------hcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 190 DGNDINIGCPQMV---------------AKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 190 ~~~~~pvsvK~r~---------------~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
..+|+.+.-|. +..++-++.+++ |||.|.+++..
T Consensus 142 --~g~~~~i~aRtda~~~~~g~~~~~~~~~ai~Ra~ay~eAGAd~i~~e~~~ 191 (275)
T 2ze3_A 142 --SGVPVFLNARTDTFLKGHGATDEERLAETVRRGQAYADAGADGIFVPLAL 191 (275)
T ss_dssp --HTSCCEEEEECCTTTTTCSSSHHHHHHHHHHHHHHHHHTTCSEEECTTCC
T ss_pred --cCCCeEEEEechhhhccccccchhhHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 03455555552 234556677888 99999999965
|
| >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=84.21 E-value=3.4 Score=36.34 Aligned_cols=76 Identities=12% Similarity=-0.121 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-..+.-.++++. ... .++||.+-+.
T Consensus 45 D~~~l~~lv~~li~~Gv~Gl~v~Gt----------TGE~~~Ls~eEr~~vi~~-~~~-----------grvpViaGvg~~ 102 (344)
T 2hmc_A 45 DFDALVRKGKELIADGMSAVVYCGS----------MGDWPLLTDEQRMEGVER-LVK-----------AGIPVIVGTGAV 102 (344)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEESSG----------GGTGGGSCHHHHHHHHHH-HHH-----------TTCCEEEECCCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCcc----------CcChhhCCHHHHHHHHHH-HhC-----------CCCcEEEecCCC
Confidence 667777777765 558899877433 444444455555677776 222 3678887776
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+-
T Consensus 103 st~eai~la~~A~~~Gadavlv~ 125 (344)
T 2hmc_A 103 NTASAVAHAVHAQKVGAKGLMVI 125 (344)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEC
Confidence 4677899999999 99999883
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=84.17 E-value=2.1 Score=38.19 Aligned_cols=86 Identities=17% Similarity=0.202 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecC------CCch--hhhhccccccccc-CCHHHHHHHHHHhhhccccccCCCCCCCCe
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINI------GCPQ--MVAKRGHYGAYLQ-DDWPLLTNLVYSPNMVHFVIAEPHCDGNDI 194 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~------gCP~--~~~~~~g~G~~l~-~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~ 194 (240)
+++++.+.++.. +.|+++|.|.. |++. +...+ .+|.... .+++...++++++++++ +.++
T Consensus 150 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~~~~~~~-~~GG~~~~~~~~~~~e~v~avR~a~---------G~d~ 219 (410)
T 2gl5_A 150 TPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNR-NYSGLLLADQLKMGEARIAAMREAM---------GDDA 219 (410)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCG-GGGSCCCHHHHHHHHHHHHHHHHHH---------CSSS
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccccCCcccccccccccc-cccCccchhHHHHHHHHHHHHHHhc---------CCCC
Confidence 888887766654 66999999985 5421 11111 1333221 24566678888888863 1356
Q ss_pred eeEEeee----hhcHHHHHHHHhC-CCCeEE
Q psy7344 195 NIGCPQM----VAKRGHYGAYLQD-DWPLLT 220 (240)
Q Consensus 195 pvsvK~r----~~~~~~~~~~l~~-G~~~it 220 (240)
++.+... .++..++++.|++ |+++|-
T Consensus 220 ~l~vDan~~~~~~~ai~~~~~l~~~~i~~iE 250 (410)
T 2gl5_A 220 DIIVEIHSLLGTNSAIQFAKAIEKYRIFLYE 250 (410)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHGGGCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCeEE
Confidence 7776654 3567899999999 998763
|
| >3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A* | Back alignment and structure |
|---|
Probab=83.94 E-value=6 Score=33.71 Aligned_cols=91 Identities=5% Similarity=-0.125 Sum_probs=63.2
Q ss_pred CCc-eeEEeecCCHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCG-HSLMFCGNDSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~p-vivqi~g~d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
..| +.+.|.+.+.++..+.++.+. .++|.||+=.=.-.. ..+.+.+.+.++.++...
T Consensus 38 g~p~i~v~l~~~~~~e~~~~~~~~~~~gaD~VElRvD~l~~-----------~~~~~~v~~~l~~lr~~~---------- 96 (276)
T 3o1n_A 38 GAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFAN-----------VTTAESVLEAAGAIREII---------- 96 (276)
T ss_dssp SSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCTT-----------TTCHHHHHHHHHHHHHHC----------
T ss_pred CCcEEEEEeCCCCHHHHHHHHHHHhhCCCCEEEEEeccccc-----------cCcHHHHHHHHHHHHHhc----------
Confidence 355 566888899999888888886 589999984442100 124477888888888761
Q ss_pred CCeeeEEeeeh-----------hcHHHHHHHHhC-C-CCeEEEeccc
Q psy7344 192 NDINIGCPQMV-----------AKRGHYGAYLQD-D-WPLLTELGKM 225 (240)
Q Consensus 192 ~~~pvsvK~r~-----------~~~~~~~~~l~~-G-~~~itih~R~ 225 (240)
.++|+.+-.|. +...++.+.+.+ | +++|.|--..
T Consensus 97 ~~~PiI~T~Rt~~eGG~~~~~~~~~~~ll~~~l~~g~~dyIDvEl~~ 143 (276)
T 3o1n_A 97 TDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFT 143 (276)
T ss_dssp CSSCEEEECCBGGGTCSBCCCHHHHHHHHHHHHHHTCCSEEEEEGGG
T ss_pred CCCCEEEEEEEhhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEECcC
Confidence 26788888882 124566666677 8 8999986543
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=83.90 E-value=3.9 Score=35.39 Aligned_cols=79 Identities=8% Similarity=-0.066 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.-.++++.+.+.. . .++||.+-+.
T Consensus 26 D~~~l~~lv~~li~~Gv~Gl~v~Gt----------TGE~~~Ls~~Er~~v~~~~~~~~--------~-grvpViaGvg~~ 86 (311)
T 3h5d_A 26 NFDAIPALIEHLLAHHTDGILLAGT----------TAESPTLTHDEELELFAAVQKVV--------N-GRVPLIAGVGTN 86 (311)
T ss_dssp CTTHHHHHHHHHHHTTCCCEEESST----------TTTGGGSCHHHHHHHHHHHHHHS--------C-SSSCEEEECCCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc----------ccChhhCCHHHHHHHHHHHHHHh--------C-CCCcEEEeCCCc
Confidence 666777777776 558999988544 44444446666667777776651 1 3678888766
Q ss_pred -hhcHHHHHHHHhC-CC-CeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DW-PLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~-~~itih 222 (240)
..+++++++.+++ |+ |++.+.
T Consensus 87 ~t~~ai~la~~A~~~Ga~davlv~ 110 (311)
T 3h5d_A 87 DTRDSIEFVKEVAEFGGFAAGLAI 110 (311)
T ss_dssp SHHHHHHHHHHHHHSCCCSEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCcEEEEc
Confidence 5678899999999 97 999884
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=83.81 E-value=3.3 Score=37.84 Aligned_cols=78 Identities=17% Similarity=0.134 Sum_probs=52.3
Q ss_pred HHHHHHHccCCCEEEecCC----CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcH
Q psy7344 130 TEAAKLAEPHCDGIDINIG----CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKR 205 (240)
Q Consensus 130 ~~aa~~le~~~d~Idin~g----CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~ 205 (240)
..+.+.++.|+|+|.++.| |-... ..+.| ..+.+.+.++...... .++||.+-..+.+.
T Consensus 286 ~~a~~~~~~Gad~I~vg~g~g~~~~tr~--~~~~~---~p~~~~l~~~~~~~~~------------~~ipvia~GGi~~~ 348 (491)
T 1zfj_A 286 EGARALYDAGVDVVKVGIGPGSICTTRV--VAGVG---VPQVTAIYDAAAVARE------------YGKTIIADGGIKYS 348 (491)
T ss_dssp HHHHHHHHTTCSEEEECSSCCTTBCHHH--HTCCC---CCHHHHHHHHHHHHHH------------TTCEEEEESCCCSH
T ss_pred HHHHHHHHcCCCEEEECccCCcceEEee--ecCCC---CCcHHHHHHHHHHHhh------------cCCCEEeeCCCCCH
Confidence 3444555679999999875 21111 11122 2467777777765433 46788887778888
Q ss_pred HHHHHHHhCCCCeEEEeccc
Q psy7344 206 GHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 206 ~~~~~~l~~G~~~itih~R~ 225 (240)
.++++++..||+++.+ ||.
T Consensus 349 ~di~kal~~GA~~v~v-G~~ 367 (491)
T 1zfj_A 349 GDIVKALAAGGNAVML-GSM 367 (491)
T ss_dssp HHHHHHHHTTCSEEEE-STT
T ss_pred HHHHHHHHcCCcceee-CHH
Confidence 8999988779999998 664
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=83.68 E-value=3.3 Score=35.89 Aligned_cols=79 Identities=11% Similarity=-0.013 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.-.++++.+.+.+ . .++||.+-+.
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~Gt----------TGE~~~Ls~eEr~~vi~~~~~~~--------~-grvpViaGvg~s 91 (314)
T 3d0c_A 31 DWKGLDDNVEFLLQNGIEVIVPNGN----------TGEFYALTIEEAKQVATRVTELV--------N-GRATVVAGIGYS 91 (314)
T ss_dssp CHHHHHHHHHHHHHTTCSEECTTSG----------GGTGGGSCHHHHHHHHHHHHHHH--------T-TSSEEEEEECSS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc----------cCChhhCCHHHHHHHHHHHHHHh--------C-CCCeEEecCCcC
Confidence 667777777766 458899866322 44444446666667777666641 1 2578877665
Q ss_pred hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 ~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+-
T Consensus 92 t~~ai~la~~A~~~Gadavlv~ 113 (314)
T 3d0c_A 92 VDTAIELGKSAIDSGADCVMIH 113 (314)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEC
Confidence 4566888999999 99999884
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=83.60 E-value=4.4 Score=35.95 Aligned_cols=71 Identities=11% Similarity=0.023 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
+++++.+.++.+ +.|++.|.|..|+ .+++...++++++++++ +.++++.+...
T Consensus 165 ~~~~~~~~a~~~~~~Gf~~iKik~g~---------------~~~~~~~e~v~avr~a~---------g~~~~l~vDan~~ 220 (392)
T 1tzz_A 165 GLSMLRGEMRGYLDRGYNVVKMKIGG---------------APIEEDRMRIEAVLEEI---------GKDAQLAVDANGR 220 (392)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEEECSS---------------SCHHHHHHHHHHHHHHH---------TTTCEEEEECTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCC---------------CCHHHHHHHHHHHHHhc---------CCCCeEEEECCCC
Confidence 788887766654 6689999998885 24455556777777752 13456666544
Q ss_pred --hhcHHHHHHHHhC-CCCeE
Q psy7344 202 --VAKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 202 --~~~~~~~~~~l~~-G~~~i 219 (240)
.++..++++.|++ |+++|
T Consensus 221 ~~~~~a~~~~~~l~~~~i~~i 241 (392)
T 1tzz_A 221 FNLETGIAYAKMLRDYPLFWY 241 (392)
T ss_dssp CCHHHHHHHHHHHTTSCCSEE
T ss_pred CCHHHHHHHHHHHHHcCCCee
Confidence 3567899999999 99987
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A | Back alignment and structure |
|---|
Probab=83.33 E-value=4.2 Score=36.51 Aligned_cols=90 Identities=12% Similarity=0.053 Sum_probs=60.0
Q ss_pred CceeEEeecCCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCC
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGND 193 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~ 193 (240)
.|+...+.+.+++++.+.++.+ +.|+..+-+ .|++.... .....+++.-.+.++++++++ |.+
T Consensus 115 v~~y~~~~~~~~e~~~~~a~~~~~~G~~~iKl-~G~~~~~~------~~~~~~~~~d~e~v~avR~av---------G~d 178 (405)
T 3rr1_A 115 MRTYSWVGGDRPADVIAGMKALQAGGFDHFKL-NGCEEMGI------IDTSRAVDAAVARVAEIRSAF---------GNT 178 (405)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHHHTTCCEEEE-ESCCSSSC------BCSHHHHHHHHHHHHHHHHTT---------GGG
T ss_pred eeeeEeCCCCCHHHHHHHHHHHHHcCCCEEEE-ecCCcccc------cccchhHHHHHHHHHHHHHHh---------CCC
Confidence 5666666667888888776654 669999999 88653210 001234555567777888762 135
Q ss_pred eeeEEeee----hhcHHHHHHHHhC-CCCeEE
Q psy7344 194 INIGCPQM----VAKRGHYGAYLQD-DWPLLT 220 (240)
Q Consensus 194 ~pvsvK~r----~~~~~~~~~~l~~-G~~~it 220 (240)
+++.+... .++..++++.|++ |+++|-
T Consensus 179 ~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iE 210 (405)
T 3rr1_A 179 VEFGLDFHGRVSAPMAKVLIKELEPYRPLFIE 210 (405)
T ss_dssp SEEEEECCSCBCHHHHHHHHHHHGGGCCSCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 56666544 4567889999999 999883
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=83.31 E-value=5.5 Score=34.36 Aligned_cols=104 Identities=11% Similarity=-0.083 Sum_probs=65.9
Q ss_pred hHHHhhhcccCCCCceeEEeec--------CCH-HHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHH
Q psy7344 102 LLTELGFKTRSHMCGHSLMFCG--------NDS-KNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT 171 (240)
Q Consensus 102 li~~i~~~~~~~~~pvivqi~g--------~d~-~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~ 171 (240)
.+.++....+....|+++.+.. .++ +....+++.+.+ |+|.|-++... . ++| +|+.+.
T Consensus 143 ~i~~v~~~~~~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~lGaD~iKv~~~~--~-----~~g-----~~~~~~ 210 (304)
T 1to3_A 143 MVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPL--Y-----GKG-----ARSDLL 210 (304)
T ss_dssp HHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECCGG--G-----GCS-----CHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEEECCCCccccCCChhHHHHHHHHHHHHcCCCEEEeCCCc--C-----CCC-----CHHHHH
Confidence 3444444434446788887642 134 666777888766 88988776541 1 122 889998
Q ss_pred HHHHHhhhccccccCCCCCCCCee-eEEeee--hhcHHHHHHHHhC-CCCeEEEeccccccc
Q psy7344 172 NLVYSPNMVHFVIAEPHCDGNDIN-IGCPQM--VAKRGHYGAYLQD-DWPLLTELGKMAMLV 229 (240)
Q Consensus 172 ~iv~~~~~~~~~i~~~~~~~~~~p-vsvK~r--~~~~~~~~~~l~~-G~~~itih~R~~~~~ 229 (240)
++++..... +.+| |.+=.- .+++.+.++.+.+ |++.+.+ ||+-.|.
T Consensus 211 ~vv~~~~~~-----------~~~P~Vv~aGG~~~~~~~~~~~~a~~aGa~Gv~v-GRaI~q~ 260 (304)
T 1to3_A 211 TASQRLNGH-----------INMPWVILSSGVDEKLFPRAVRVAMEAGASGFLA-GRAVWSS 260 (304)
T ss_dssp HHHHHHHHT-----------CCSCEEECCTTSCTTTHHHHHHHHHHTTCCEEEE-SHHHHGG
T ss_pred HHHHhcccc-----------CCCCeEEEecCCCHHHHHHHHHHHHHcCCeEEEE-ehHHhCc
Confidence 998875553 3445 332222 3456666666677 9999999 9998875
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=83.22 E-value=2.6 Score=37.55 Aligned_cols=83 Identities=12% Similarity=0.027 Sum_probs=57.1
Q ss_pred CceeEEee-cCCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCH-HHHHHHHHHhhhccccccCCCCCC
Q psy7344 115 CGHSLMFC-GNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDW-PLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 115 ~pvivqi~-g~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p-~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
.|+...+. +++++++.+.++.+ +.|++.|.++. ||. |. ++ +...++++++++++ +
T Consensus 134 vp~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~-spv--------G~----~~~~~~~e~v~avr~a~---------G 191 (401)
T 2hzg_A 134 KRPYASLLFGDTPQETLERARAARRDGFAAVKFGW-GPI--------GR----GTVAADADQIMAAREGL---------G 191 (401)
T ss_dssp BEEEEEEECCSSHHHHHHHHHHHHHTTCSEEEEES-TTT--------TS----SCHHHHHHHHHHHHHHH---------C
T ss_pred eEeeEEcCCCCCHHHHHHHHHHHHHhCCCeEEEcC-CCC--------CC----CHHHHHHHHHHHHHHHh---------C
Confidence 56654444 56888888776655 66899999985 442 11 44 55567788887762 1
Q ss_pred CCeeeEEeee--h----hcHHHHHHHHhC-CCCeE
Q psy7344 192 NDINIGCPQM--V----AKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 192 ~~~pvsvK~r--~----~~~~~~~~~l~~-G~~~i 219 (240)
.++++.++.. + ++..++++.|++ |+++|
T Consensus 192 ~d~~l~vDan~~~~~~~~~a~~~~~~l~~~~i~~i 226 (401)
T 2hzg_A 192 PDGDLMVDVGQIFGEDVEAAAARLPTLDAAGVLWL 226 (401)
T ss_dssp SSSEEEEECTTTTTTCHHHHHTTHHHHHHTTCSEE
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 3677877765 5 345778999999 99987
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=83.09 E-value=5.6 Score=35.50 Aligned_cols=88 Identities=13% Similarity=0.065 Sum_probs=62.0
Q ss_pred CceeEEee---cCCHHHHHHHH-HH-HccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCC
Q psy7344 115 CGHSLMFC---GNDSKNLTEAA-KL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHC 189 (240)
Q Consensus 115 ~pvivqi~---g~d~~~~~~aa-~~-le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~ 189 (240)
.|+...+. ..+++++.+.+ +. +++|+..+-+..|++... ...+++.-.+.++++++++
T Consensus 126 v~~y~s~~g~~~~~~e~~~~~a~~~~~~~G~~~~KlKvG~~~~~---------~~~~~~~d~~~v~avR~a~-------- 188 (393)
T 4dwd_A 126 LPCYSSIGGNAARSVDEVVREVARRVEAEQPAAVKIRWDGDRTR---------CDVDIPGDIAKARAVRELL-------- 188 (393)
T ss_dssp EEEEEEECCCSSSCHHHHHHHHHHHHHHHCCSEEEEECCCCTTC---------CSCCHHHHHHHHHHHHHHH--------
T ss_pred eeeEEecCccCCCCHHHHHHHHHHHHHHcCCCEEEEccCCCCcc---------cccCHHHHHHHHHHHHHHh--------
Confidence 56666652 25788877766 54 466999999999975431 2457787778888888863
Q ss_pred CCCCeeeEEeee----hhcHHHHHHHHhC-CCCeEE
Q psy7344 190 DGNDINIGCPQM----VAKRGHYGAYLQD-DWPLLT 220 (240)
Q Consensus 190 ~~~~~pvsvK~r----~~~~~~~~~~l~~-G~~~it 220 (240)
+.++++.+... .++..++++.|++ |+++|-
T Consensus 189 -g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE 223 (393)
T 4dwd_A 189 -GPDAVIGFDANNGYSVGGAIRVGRALEDLGYSWFE 223 (393)
T ss_dssp -CTTCCEEEECTTCCCHHHHHHHHHHHHHTTCSEEE
T ss_pred -CCCCeEEEECCCCCCHHHHHHHHHHHHhhCCCEEE
Confidence 13556666554 3567889999999 998883
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=83.05 E-value=6 Score=33.63 Aligned_cols=96 Identities=7% Similarity=-0.010 Sum_probs=58.9
Q ss_pred ceeEEeecC--CHHHHHHHHHHHcc-CCCEEEecCCCchhhh-----hcccccccc--cCCHHHHHHHHHHhhhcccccc
Q psy7344 116 GHSLMFCGN--DSKNLTEAAKLAEP-HCDGIDINIGCPQMVA-----KRGHYGAYL--QDDWPLLTNLVYSPNMVHFVIA 185 (240)
Q Consensus 116 pvivqi~g~--d~~~~~~aa~~le~-~~d~Idin~gCP~~~~-----~~~g~G~~l--~~~p~~i~~iv~~~~~~~~~i~ 185 (240)
.++.=|..+ |.+.+.++++.+++ |+|.|+|+.=-..+.+ .+.. -.+| .-+.+.+-++++.+++..
T Consensus 21 ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~-~rAL~~G~~~~~~~~~v~~~r~~~---- 95 (271)
T 3nav_A 21 AFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGAN-LRALAAKTTPDICFELIAQIRARN---- 95 (271)
T ss_dssp EEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHC----
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHH-HHHHHcCCCHHHHHHHHHHHHhcC----
Confidence 455555555 56788999998866 8999999743211211 1000 0001 134555556777776641
Q ss_pred CCCCCCCCeeeEEeeehh-----cHHHHHHHHhC-CCCeEEEe
Q psy7344 186 EPHCDGNDINIGCPQMVA-----KRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 186 ~~~~~~~~~pvsvK~r~~-----~~~~~~~~l~~-G~~~itih 222 (240)
.++|+.+-.-++ -+..|++.+.+ |+|++.+.
T Consensus 96 ------~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIip 132 (271)
T 3nav_A 96 ------PETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIA 132 (271)
T ss_dssp ------TTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEET
T ss_pred ------CCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEEC
Confidence 467888754432 34779999999 99998884
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=83.04 E-value=2.5 Score=37.67 Aligned_cols=69 Identities=10% Similarity=-0.047 Sum_probs=50.0
Q ss_pred EEecCCCchhhhhcccccccccC-CHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEE
Q psy7344 143 IDINIGCPQMVAKRGHYGAYLQD-DWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLT 220 (240)
Q Consensus 143 Idin~gCP~~~~~~~g~G~~l~~-~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~it 220 (240)
+++|+|||..... .+.. |++.+.++++.+++. ..|+.+++......+.++.+++ |+|.++
T Consensus 122 ~d~~~g~~~~~q~------~~~~~d~~~~~~~i~~~~~~------------g~~v~~~v~~~~~~e~a~~~~~agad~i~ 183 (393)
T 2qr6_A 122 GDQAAATRTLQEL------HAAPLDTELLSERIAQVRDS------------GEIVAVRVSPQNVREIAPIVIKAGADLLV 183 (393)
T ss_dssp HHHHHHHHHHHHH------HHSCCCHHHHHHHHHHHHHT------------TSCCEEEECTTTHHHHHHHHHHTTCSEEE
T ss_pred cCCCccchhhhhc------ccccCCHHHHHHHHHHHhhc------------CCeEEEEeCCccHHHHHHHHHHCCCCEEE
Confidence 3455677653211 1223 899999999988774 4578888886677888999988 999999
Q ss_pred Eeccccccc
Q psy7344 221 ELGKMAMLV 229 (240)
Q Consensus 221 ih~R~~~~~ 229 (240)
+|++...|.
T Consensus 184 i~~~~~~~~ 192 (393)
T 2qr6_A 184 IQGTLISAE 192 (393)
T ss_dssp EECSSCCSS
T ss_pred EeCCccccc
Confidence 998875444
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=82.70 E-value=2.5 Score=36.20 Aligned_cols=55 Identities=11% Similarity=-0.035 Sum_probs=38.5
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
..|+++.+++++..+..+.++..++ |+|++.+.. |.- ...+.+.+.+-.+.+.++
T Consensus 69 r~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~--P~y----------~~~s~~~l~~~f~~ia~a 124 (292)
T 2vc6_A 69 RVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVS--PYY----------NKPTQEGIYQHFKAIDAA 124 (292)
T ss_dssp SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEEC--CCS----------SCCCHHHHHHHHHHHHHH
T ss_pred CCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcC--CCC----------CCCCHHHHHHHHHHHHHh
Confidence 4799999988899999999998876 899999843 321 112455555555555555
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A | Back alignment and structure |
|---|
Probab=82.52 E-value=4.6 Score=36.05 Aligned_cols=97 Identities=10% Similarity=0.011 Sum_probs=61.1
Q ss_pred CceeEEeecCCHHHHHHHHHHH-ccCCCEEEecCCCchhhhh------ccccccccc--CCHHHHHHHHHHhhhcccccc
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAK------RGHYGAYLQ--DDWPLLTNLVYSPNMVHFVIA 185 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~------~~g~G~~l~--~~p~~i~~iv~~~~~~~~~i~ 185 (240)
.|+...+.+.+++++.+.++.. ++|+..+-+..|++..... ...-|..+. .+.+...++++++++++
T Consensus 123 v~~y~~~~~~~~e~~~~~a~~~~~~G~~~~K~KvG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~v~avR~a~---- 198 (401)
T 3sbf_A 123 IPVYTHATSDTMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKY---- 198 (401)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHTTCCEEEEEESCCCSCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHH----
T ss_pred eeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchHHHHHHHHHHHHHHHHc----
Confidence 5665566678899888766654 6799999998886421100 000111110 11345556777887763
Q ss_pred CCCCCCCCeeeEEeee----hhcHHHHHHHHhC-CCCeEE
Q psy7344 186 EPHCDGNDINIGCPQM----VAKRGHYGAYLQD-DWPLLT 220 (240)
Q Consensus 186 ~~~~~~~~~pvsvK~r----~~~~~~~~~~l~~-G~~~it 220 (240)
+.++++.+... .++..++++.|++ |+++|-
T Consensus 199 -----G~d~~l~vDan~~~~~~~A~~~~~~L~~~~i~~iE 233 (401)
T 3sbf_A 199 -----GNQFHILHDVHERLFPNQAIQFAKEVEQYKPYFIE 233 (401)
T ss_dssp -----TTSSEEEEECTTCSCHHHHHHHHHHHGGGCCSCEE
T ss_pred -----CCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 13567776655 4567899999999 999883
|
| >4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=82.51 E-value=7 Score=32.32 Aligned_cols=82 Identities=10% Similarity=0.130 Sum_probs=52.0
Q ss_pred CceeEEeecC-CHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCC
Q psy7344 115 CGHSLMFCGN-DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGND 193 (240)
Q Consensus 115 ~pvivqi~g~-d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~ 193 (240)
.+..|+|+|- ++++. + .++.++|.|=+.+--+++. --+++.+++|++.+.
T Consensus 19 ~~M~VKICGit~~ed~-~---a~~~gaD~iGfIf~~~SpR----------~V~~~~A~~i~~~~~--------------- 69 (228)
T 4aaj_A 19 SHMFVKICGIKSLEEL-E---IVEKHADATGVVVNSNSKR----------RIPLEKAREIIENSA--------------- 69 (228)
T ss_dssp -CCEEEECCCCSHHHH-H---HHHTTCSEEEEECSSSSTT----------BCCHHHHHHHHHHCS---------------
T ss_pred CceEEEECCCCcHHHH-H---HHHcCCCEEEEEecCCCCC----------CCCHHHHHHHHHhhC---------------
Confidence 3467899984 55543 2 3456889988777522231 147899999887532
Q ss_pred eeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 194 INIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 194 ~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.|+.+-.-..+..+.++.++. +.|.|.+||.-
T Consensus 70 ~~~~~v~v~v~~~ei~~~i~~~~ld~vQLHG~E 102 (228)
T 4aaj_A 70 IPVFLVSTMVGFSEWAMAIERTGAQYIQVHSNA 102 (228)
T ss_dssp SCEEEEECCCCHHHHHHHHHHHTCSEEEECSCC
T ss_pred CCCEEEeccCchHHHHHHHHhccchheeccccc
Confidence 233222222345677888888 99999999853
|
| >2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A* | Back alignment and structure |
|---|
Probab=82.39 E-value=2.6 Score=36.42 Aligned_cols=84 Identities=11% Similarity=-0.032 Sum_probs=52.3
Q ss_pred CHHHHHH-HHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh-
Q psy7344 125 DSKNLTE-AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV- 202 (240)
Q Consensus 125 d~~~~~~-aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~- 202 (240)
+.+...+ +.+++++|+|.||||.-- .+-|+.-....+.+.+++..++... ..++|+|+-..-
T Consensus 44 ~~~~a~~~a~~~v~~GAdiIDIGgeS-------TrPga~~v~~~eE~~Rv~pvi~~l~---------~~~vpiSIDT~~~ 107 (294)
T 2y5s_A 44 ARDDALRRAERMIAEGADLLDIGGES-------TRPGAPPVPLDEELARVIPLVEALR---------PLNVPLSIDTYKP 107 (294)
T ss_dssp CTTHHHHHHHHHHHTTCSEEEEESSC-------CSTTCCCCCHHHHHHHHHHHHHHHG---------GGCSCEEEECCCH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCc-------CCCCCCCCCHHHHHHHHHHHHHHHh---------hCCCeEEEECCCH
Confidence 5555555 445567899999998731 1113333445666666666655530 026788887761
Q ss_pred --------------hc-----HHHHHHHHhC-CCCeEEEecc
Q psy7344 203 --------------AK-----RGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 203 --------------~~-----~~~~~~~l~~-G~~~itih~R 224 (240)
.+ ..++++.+.+ |+..|.+|.|
T Consensus 108 ~Va~aAl~aGa~iINdVsg~~d~~m~~~~a~~~~~vVlmh~~ 149 (294)
T 2y5s_A 108 AVMRAALAAGADLINDIWGFRQPGAIDAVRDGNSGLCAMHML 149 (294)
T ss_dssp HHHHHHHHHTCSEEEETTTTCSTTHHHHHSSSSCEEEEECCC
T ss_pred HHHHHHHHcCCCEEEECCCCCchHHHHHHHHhCCCEEEECCC
Confidence 11 2346777788 9999999976
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=82.25 E-value=7.1 Score=35.09 Aligned_cols=87 Identities=11% Similarity=-0.009 Sum_probs=59.1
Q ss_pred CceeEE-eecCCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 115 CGHSLM-FCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 115 ~pvivq-i~g~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
.|+... +...+++++.+.++.+ +.|++.|.+..|+... . |. .+++...+.++++++++ +.
T Consensus 168 v~~y~s~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~gp~---d---g~---~~~~~die~v~avReav---------G~ 229 (412)
T 3stp_A 168 IPVYYSKLYAGSIEAMQKEAEEAMKGGYKAFKSRFGYGPK---D---GM---PGMRENLKRVEAVREVI---------GY 229 (412)
T ss_dssp EEEEEECCCSCCHHHHHHHHHHHHTTTCSEEEEECCCCGG---G---HH---HHHHHHHHHHHHHHHHH---------CS
T ss_pred EEEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecccCcc---c---cc---chHHHHHHHHHHHHHHc---------CC
Confidence 455554 2346888888876665 6699999999886421 0 11 24455567777777763 13
Q ss_pred CeeeEEeee----hhcHHHHHHHHhC-CCCeE
Q psy7344 193 DINIGCPQM----VAKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 193 ~~pvsvK~r----~~~~~~~~~~l~~-G~~~i 219 (240)
++++.+... .++..++++.|++ |+++|
T Consensus 230 d~~L~vDaN~~~~~~~Ai~~~~~Le~~~i~~i 261 (412)
T 3stp_A 230 DNDLMLECYMGWNLDYAKRMLPKLAPYEPRWL 261 (412)
T ss_dssp SSEEEEECTTCSCHHHHHHHHHHHGGGCCSEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 567776655 4567889999999 99988
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=82.22 E-value=6.3 Score=33.50 Aligned_cols=76 Identities=9% Similarity=-0.044 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.=.++++.+.+. .+- |.+-+-
T Consensus 17 D~~~l~~lv~~li~~Gv~gl~v~Gt----------tGE~~~Ls~~Er~~v~~~~~~~-----------~~g-vi~Gvg~~ 74 (286)
T 2r91_A 17 DPELFANHVKNITSKGVDVVFVAGT----------TGLGPALSLQEKMELTDAATSA-----------ARR-VIVQVASL 74 (286)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEETST----------TTTGGGSCHHHHHHHHHHHHHH-----------CSS-EEEECCCS
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcc----------ccChhhCCHHHHHHHHHHHHHH-----------hCC-EEEeeCCC
Confidence 677777877766 558999887433 4444444666666788877765 221 544444
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+-
T Consensus 75 ~t~~ai~la~~A~~~Gadavlv~ 97 (286)
T 2r91_A 75 NADEAIALAKYAESRGAEAVASL 97 (286)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEc
Confidence 5678899999999 99999883
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=82.22 E-value=3.2 Score=36.98 Aligned_cols=83 Identities=13% Similarity=0.153 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecC------CCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeE
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINI------GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIG 197 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~------gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvs 197 (240)
+++++.+.++.+ +.|+++|.|.. |++... ...|.....+++...++++++++++ +.++++.
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s---~~~g~~~~~~~~~~~e~v~avr~av---------G~d~~l~ 213 (403)
T 2ox4_A 146 RKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSREGV---FLEGPLPSETIKIGVERVEAIRNAV---------GPDVDII 213 (403)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSSSCTTSCCTTC---CCSSSCCHHHHHHHHHHHHHHHHHH---------CTTSEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccccCCccccccC---cccCCCchHHHHHHHHHHHHHHHHh---------CCCCeEE
Confidence 888887766654 66999999985 653211 1112111124455667888888763 1356777
Q ss_pred Eeee----hhcHHHHHHHHhC-CCCeE
Q psy7344 198 CPQM----VAKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 198 vK~r----~~~~~~~~~~l~~-G~~~i 219 (240)
+... .++..++++.|++ |+++|
T Consensus 214 vDan~~~~~~~ai~~~~~l~~~~i~~i 240 (403)
T 2ox4_A 214 VENHGHTDLVSAIQFAKAIEEFNIFFY 240 (403)
T ss_dssp EECTTCSCHHHHHHHHHHHGGGCEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHhhCCCEE
Confidence 6654 3567889999999 99876
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=82.15 E-value=8.7 Score=31.13 Aligned_cols=82 Identities=9% Similarity=0.017 Sum_probs=51.0
Q ss_pred eEEeec-CCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 118 SLMFCG-NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 118 ivqi~g-~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
.++|+| .++++...++ +.|+|.+-+.+--+++. + -+++.+++|.+.+... -.+|
T Consensus 3 ~vKICGit~~eda~~a~---~~GaD~iGfif~~~SpR-----~-----V~~~~a~~i~~~~~~~------------~~~V 57 (205)
T 1nsj_A 3 RVKICGITNLEDALFSV---ESGADAVGFVFYPKSKR-----Y-----ISPEDARRISVELPPF------------VFRV 57 (205)
T ss_dssp EEEECCCCSHHHHHHHH---HHTCSEEEEECCTTCTT-----B-----CCHHHHHHHHHHSCSS------------SEEE
T ss_pred cEEECCCCcHHHHHHHH---HcCCCEEEEEecCCCCC-----c-----CCHHHHHHHHHhCCCC------------CCEE
Confidence 368877 4555444333 44888888776422221 1 4789999998876432 1233
Q ss_pred EEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 197 GCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 197 svK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.| ..-.+..++.+.++. +.|.|.+||--
T Consensus 58 gV-fvn~~~~~i~~~~~~~~ld~vQLHG~e 86 (205)
T 1nsj_A 58 GV-FVNEEPEKILDVASYVQLNAVQLHGEE 86 (205)
T ss_dssp EE-ESSCCHHHHHHHHHHHTCSEEEECSCC
T ss_pred EE-EeCCCHHHHHHHHHhhCCCEEEECCCC
Confidence 33 112355677788888 99999999853
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=82.11 E-value=5 Score=35.67 Aligned_cols=32 Identities=6% Similarity=-0.158 Sum_probs=27.0
Q ss_pred CeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 193 DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 193 ~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
++||.+-..+.+-.+.++++..|||++.+ ||.
T Consensus 278 ~ipvia~GGI~~g~Dv~KaLalGAdaV~i-g~~ 309 (365)
T 3sr7_A 278 KVEILASGGIRHPLDIIKALVLGAKAVGL-SRT 309 (365)
T ss_dssp TSEEEECSSCCSHHHHHHHHHHTCSEEEE-SHH
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCEEEE-CHH
Confidence 57888877788889999999889999998 763
|
| >3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=82.06 E-value=4.1 Score=35.27 Aligned_cols=79 Identities=10% Similarity=-0.018 Sum_probs=51.1
Q ss_pred CCHHHHHHHHH-HHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhh---hccccccCCCCCCCCeeeEEe
Q psy7344 124 NDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN---MVHFVIAEPHCDGNDINIGCP 199 (240)
Q Consensus 124 ~d~~~~~~aa~-~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~---~~~~~i~~~~~~~~~~pvsvK 199 (240)
.|.+...+.|+ ++++|+|.||||.|-+ .....+.+.+++..++ +. .++|+++-
T Consensus 34 ~~~~~a~~~A~~~v~~GAdiIDIg~g~~------------~v~~~eem~rvv~~i~~~~~~-----------~~vpisID 90 (300)
T 3k13_A 34 KKYDEALSIARQQVEDGALVIDVNMDDG------------LLDARTEMTTFLNLIMSEPEI-----------ARVPVMID 90 (300)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEEECCCT------------TSCHHHHHHHHHHHHHTCHHH-----------HTSCEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCC------------CCCHHHHHHHHHHHHHHhhhc-----------CCCeEEEe
Confidence 45666666555 4577999999998721 1234566666666655 22 35677765
Q ss_pred ee--------h------------------hcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 200 QM--------V------------------AKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 200 ~r--------~------------------~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.. + +...++++.+.+ |+..|.+|-+.
T Consensus 91 T~~~~V~eaaL~~~~Ga~iINdIs~~~~d~~~~~~~~l~a~~ga~vV~mh~d~ 143 (300)
T 3k13_A 91 SSKWEVIEAGLKCLQGKSIVNSISLKEGEEVFLEHARIIKQYGAATVVMAFDE 143 (300)
T ss_dssp CSCHHHHHHHHHHCSSCCEEEEECSTTCHHHHHHHHHHHHHHTCEEEEESEET
T ss_pred CCCHHHHHHHHHhcCCCCEEEeCCcccCChhHHHHHHHHHHhCCeEEEEeeCC
Confidence 54 0 122367788888 99999999753
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=82.03 E-value=6.8 Score=33.45 Aligned_cols=76 Identities=13% Similarity=-0.078 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.-.++++.+.+. .+- |.+-+-
T Consensus 18 D~~~l~~lv~~li~~Gv~gl~~~Gt----------tGE~~~Ls~eEr~~v~~~~~~~-----------~~g-viaGvg~~ 75 (293)
T 1w3i_A 18 DKEKLKIHAENLIRKGIDKLFVNGT----------TGLGPSLSPEEKLENLKAVYDV-----------TNK-IIFQVGGL 75 (293)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESST----------TTTGGGSCHHHHHHHHHHHHTT-----------CSC-EEEECCCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc----------ccChhhCCHHHHHHHHHHHHHH-----------cCC-EEEecCCC
Confidence 677777877766 558999887433 4444444666666888877765 222 544444
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
..+++++++.+++ |+|++.+-
T Consensus 76 ~t~~ai~la~~A~~~Gadavlv~ 98 (293)
T 1w3i_A 76 NLDDAIRLAKLSKDFDIVGIASY 98 (293)
T ss_dssp CHHHHHHHHHHGGGSCCSEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEc
Confidence 5677899999999 99999884
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=81.93 E-value=2.3 Score=36.60 Aligned_cols=32 Identities=22% Similarity=0.111 Sum_probs=28.7
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-CCCEEEe
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDI 145 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idi 145 (240)
..|+++.+++++..+..+.++..++ |+|++.+
T Consensus 73 rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv 105 (300)
T 3eb2_A 73 RVPVVAGVASTSVADAVAQAKLYEKLGADGILA 105 (300)
T ss_dssp SSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4799999999999999999999876 8999998
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=81.80 E-value=2.3 Score=37.70 Aligned_cols=89 Identities=17% Similarity=0.099 Sum_probs=51.7
Q ss_pred CCceeE-EeecCCHHHHHHHHHHHccCCCEEEecCCCchh-hhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSL-MFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQM-VAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pviv-qi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~-~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
+.|+++ ++ .+++ .+.+..+.|+|+|.++.+ |-. .+.+.-.|. ...+++.+.++.+..+.
T Consensus 145 ~~~Vivg~v--~t~e---~A~~l~~aGaD~I~VG~~-~Gs~~~tr~~~g~-g~p~~~~i~~v~~~~~~------------ 205 (361)
T 3khj_A 145 NIDVIVGNV--VTEE---ATKELIENGADGIKVGIG-PGSICTTRIVAGV-GVPQITAIEKCSSVASK------------ 205 (361)
T ss_dssp CCEEEEEEE--CSHH---HHHHHHHTTCSEEEECSS-CCTTCCHHHHTCB-CCCHHHHHHHHHHHHHH------------
T ss_pred CCcEEEccC--CCHH---HHHHHHHcCcCEEEEecC-CCcCCCcccccCC-CCCcHHHHHHHHHHHhh------------
Confidence 456665 32 3333 333444568999999654 211 011110111 12567777777665443
Q ss_pred CCeeeEEeeehhcHHHHHHHHhCCCCeEEE
Q psy7344 192 NDINIGCPQMVAKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 192 ~~~pvsvK~r~~~~~~~~~~l~~G~~~iti 221 (240)
.++||.+-..+.+..++++++..||+++.+
T Consensus 206 ~~iPVIA~GGI~~~~di~kala~GAd~V~v 235 (361)
T 3khj_A 206 FGIPIIADGGIRYSGDIGKALAVGASSVMI 235 (361)
T ss_dssp HTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred cCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 356777766677777787777779999987
|
| >1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A | Back alignment and structure |
|---|
Probab=81.62 E-value=4 Score=33.90 Aligned_cols=82 Identities=13% Similarity=0.076 Sum_probs=51.2
Q ss_pred CceeEEeecCCHHHHHHHHHHHcc-C--CCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLAEP-H--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~le~-~--~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
.|+++.+ |..++.++.+.+++ + ++.+.++... .. .+| |+ +++.+++. +
T Consensus 15 ~~~ilal---D~~~l~~~~~~~~~~~~~v~~~Kv~~d~--~~----~~G------~~----~v~~lr~~----------~ 65 (245)
T 1eix_A 15 SPVVVAL---DYHNRDDALAFVDKIDPRDCRLKVGKEM--FT----LFG------PQ----FVRELQQR----------G 65 (245)
T ss_dssp CCEEEEE---CCSSHHHHHHHHTTSCTTTCEEEEEHHH--HH----HHH------HH----HHHHHHHT----------T
T ss_pred CCeEEEE---CCCCHHHHHHHHHHhCccCcEEEEcHHH--HH----HhC------HH----HHHHHHHC----------C
Confidence 4666654 55556677777765 3 6777775552 11 112 23 44444443 1
Q ss_pred CCeeeEEeee-hhcH-HHHHHHHhC-CCCeEEEeccc
Q psy7344 192 NDINIGCPQM-VAKR-GHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 192 ~~~pvsvK~r-~~~~-~~~~~~l~~-G~~~itih~R~ 225 (240)
..+++-+|+- +.++ ..+++.+.+ |+|.+|+|+=.
T Consensus 66 ~~v~lD~kl~Dip~t~~~~i~~~~~~Gad~vTvH~~~ 102 (245)
T 1eix_A 66 FDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASG 102 (245)
T ss_dssp CCEEEEEEECSCHHHHHHHHHHHHHHTCSEEEEBGGG
T ss_pred CcEEEEeeccccHHHHHHHHHHHHhCCCCEEEEeccC
Confidence 5788999998 3344 347888888 99999999754
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=81.58 E-value=1.6 Score=35.97 Aligned_cols=32 Identities=6% Similarity=-0.137 Sum_probs=23.2
Q ss_pred CCeeeEEeeehhcHHHHHHHHhCCCCeEEEec
Q psy7344 192 NDINIGCPQMVAKRGHYGAYLQDDWPLLTELG 223 (240)
Q Consensus 192 ~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~ 223 (240)
+++|+.++..+.+..+..+.++.|||.+.+|.
T Consensus 73 ~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~ 104 (253)
T 1thf_D 73 IDIPFTVGGGIHDFETASELILRGADKVSINT 104 (253)
T ss_dssp CCSCEEEESSCCSHHHHHHHHHTTCSEEEESH
T ss_pred CCCCEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 67899999888666554444434999998854
|
| >1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=81.34 E-value=10 Score=30.75 Aligned_cols=81 Identities=6% Similarity=-0.040 Sum_probs=50.4
Q ss_pred EEeec-CCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeE
Q psy7344 119 LMFCG-NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIG 197 (240)
Q Consensus 119 vqi~g-~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvs 197 (240)
++|+| .++++...++ +.|+|.+-+.+--+++. + -+++.+++|.+.+... -.+|.
T Consensus 3 vKICGit~~eda~~a~---~~GaD~iGfif~~~SpR-----~-----V~~~~a~~i~~~~~~~------------~~~Vg 57 (203)
T 1v5x_A 3 VKICGITRLEDALLAE---ALGAFALGFVLAPGSRR-----R-----IAPEAARAIGEALGPF------------VVRVG 57 (203)
T ss_dssp EEECCCCCHHHHHHHH---HHTCSEEEEECCTTCTT-----B-----CCHHHHHHHHHHSCSS------------SEEEE
T ss_pred EEEcCCCcHHHHHHHH---HcCCCEEEEEecCCCCC-----c-----CCHHHHHHHHHhCCCC------------CCEEE
Confidence 57877 4555444333 44888888775422221 1 4789999998876432 12333
Q ss_pred EeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 198 CPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 198 vK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
| ..-.+..++.+.++. +.|.|.+||--
T Consensus 58 V-fvn~~~~~i~~~~~~~~ld~vQLHG~e 85 (203)
T 1v5x_A 58 V-FRDQPPEEVLRLMEEARLQVAQLHGEE 85 (203)
T ss_dssp E-ESSCCHHHHHHHHHHTTCSEEEECSCC
T ss_pred E-EeCCCHHHHHHHHHhhCCCEEEECCCC
Confidence 3 112356677788888 99999999853
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=81.29 E-value=3 Score=34.47 Aligned_cols=86 Identities=7% Similarity=-0.051 Sum_probs=50.0
Q ss_pred CceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCe
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDI 194 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~ 194 (240)
.++++.+--.+.++..+.++.+...++.+.++.+ .-.. +| |+.++++.+. .. ..+
T Consensus 13 ~~lilAlD~~~~~~a~~~v~~~~~~v~~~Kvg~~--lf~~----~G------~~~v~~l~~~--~g-----------~~v 67 (228)
T 3m47_A 13 NRLILAMDLMNRDDALRVTGEVREYIDTVKIGYP--LVLS----EG------MDIIAEFRKR--FG-----------CRI 67 (228)
T ss_dssp GGEEEECCCCSHHHHHHHHHTTTTTCSEEEEEHH--HHHH----HC------THHHHHHHHH--HC-----------CEE
T ss_pred CCeEEEeCCCCHHHHHHHHHHcCCcccEEEEcHH--HHHh----cC------HHHHHHHHhc--CC-----------CeE
Confidence 3566664334444444444444334788888654 2211 12 3344444331 12 466
Q ss_pred eeEEeee-hhcH-HHHHHHHhC-CCCeEEEeccc
Q psy7344 195 NIGCPQM-VAKR-GHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 195 pvsvK~r-~~~~-~~~~~~l~~-G~~~itih~R~ 225 (240)
++-+|+- +.+| ..+++.+.+ |+|.+|+|+=.
T Consensus 68 ~lD~Kl~DipnTv~~~~~~~~~~gad~vtvh~~~ 101 (228)
T 3m47_A 68 IADFKVADIPETNEKICRATFKAGADAIIVHGFP 101 (228)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTT
T ss_pred EEEEeecccHhHHHHHHHHHHhCCCCEEEEeccC
Confidence 7888888 5554 568888888 99999999854
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.24 E-value=3 Score=36.19 Aligned_cols=55 Identities=5% Similarity=-0.086 Sum_probs=38.7
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
..|+++.+++++..+..+.++..++ |+|++.+- .|.-. ..+.+.+.+-.+.+.++
T Consensus 93 rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~--~P~y~----------~~s~~~l~~~f~~va~a 148 (315)
T 3na8_A 93 RVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVL--PISYW----------KLNEAEVFQHYRAVGEA 148 (315)
T ss_dssp SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEC--CCCSS----------CCCHHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEEC--CCCCC----------CCCHHHHHHHHHHHHHh
Confidence 4799999988999999999998876 89999983 34321 12445555555555555
|
| >4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A* | Back alignment and structure |
|---|
Probab=81.10 E-value=13 Score=31.23 Aligned_cols=90 Identities=11% Similarity=0.031 Sum_probs=60.4
Q ss_pred CCc-eeEEeecCCHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCG-HSLMFCGNDSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~p-vivqi~g~d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
..| +.+.|.+.+.+++.+.++.+. .++|.||+=.=+-.. ..+++.+.+.+..++...
T Consensus 18 g~PkIcvpl~~~t~~e~l~~a~~~~~~~aD~vElR~D~l~~-----------~~~~~~v~~~l~~lr~~~---------- 76 (258)
T 4h3d_A 18 GRPKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFEN-----------VENIKEVKEVLYELRSYI---------- 76 (258)
T ss_dssp SSCEEEEEECCSSHHHHHHHHHHHTTSSCSEEEEEGGGCTT-----------TTCHHHHHHHHHHHHHHC----------
T ss_pred CCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEeeccccc-----------cCCHHHHHHHHHHHHHhc----------
Confidence 356 566788889999887777665 489999984442100 246788888888888762
Q ss_pred CCeeeEEeeeh-----------hcHHHHHHHHhC-C-CCeEEEecc
Q psy7344 192 NDINIGCPQMV-----------AKRGHYGAYLQD-D-WPLLTELGK 224 (240)
Q Consensus 192 ~~~pvsvK~r~-----------~~~~~~~~~l~~-G-~~~itih~R 224 (240)
.++|+.+-.|. +...++.+.+.. | +|+|-+--.
T Consensus 77 ~~lPiI~T~Rt~~EGG~~~~~~~~~~~ll~~~~~~~~~d~iDvEl~ 122 (258)
T 4h3d_A 77 HDIPLLFTFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELF 122 (258)
T ss_dssp TTSCEEEECCCGGGTCSCCCCHHHHHHHHHHHHHTTCCSEEEEEGG
T ss_pred CCCCEEEEEechhhCCCCCCCHHHHHHHHHHHHhcCCchhhHHhhh
Confidence 36899888882 123444455544 4 888877543
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=80.91 E-value=3.2 Score=35.60 Aligned_cols=55 Identities=9% Similarity=-0.146 Sum_probs=39.6
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
..|+++.+++++..+..+.++..++ |+|++.+- .|.-. ..+.+.+.+-.+++.++
T Consensus 69 rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~--~P~y~----------~~s~~~l~~~f~~va~a 124 (297)
T 2rfg_A 69 RVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCV--AGYYN----------RPSQEGLYQHFKMVHDA 124 (297)
T ss_dssp SSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEEC--CCTTT----------CCCHHHHHHHHHHHHHH
T ss_pred CCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEc--CCCCC----------CCCHHHHHHHHHHHHHh
Confidence 4799999988899999999998876 89999984 34321 12455665666666655
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=80.85 E-value=4.6 Score=35.89 Aligned_cols=71 Identities=14% Similarity=0.111 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
+++++.+.++.+ +.|+++|.+..|- .+++...++++++++++ +.++++.+...
T Consensus 162 ~~e~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~~~e~v~avR~av---------g~d~~l~vDan~~ 217 (393)
T 2og9_A 162 PIDQLMVNASASIERGIGGIKLKVGQ---------------PDGALDIARVTAVRKHL---------GDAVPLMVDANQQ 217 (393)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEECCC---------------SCHHHHHHHHHHHHHHH---------CTTSCEEEECTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC---------------CCHHHHHHHHHHHHHHc---------CCCCEEEEECCCC
Confidence 788888776655 5689999997651 24666667788888763 13566666544
Q ss_pred --hhcHHHHHHHHhC-CCCeE
Q psy7344 202 --VAKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 202 --~~~~~~~~~~l~~-G~~~i 219 (240)
.++..++++.|++ |+++|
T Consensus 218 ~~~~~a~~~~~~l~~~~i~~i 238 (393)
T 2og9_A 218 WDRPTAQRMCRIFEPFNLVWI 238 (393)
T ss_dssp CCHHHHHHHHHHHGGGCCSCE
T ss_pred CCHHHHHHHHHHHHhhCCCEE
Confidence 3567899999999 99987
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=80.82 E-value=3.5 Score=35.26 Aligned_cols=55 Identities=7% Similarity=-0.202 Sum_probs=39.9
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
..|+++.+++++..+..+.++..++ |+|++.+- .|.- ...+.+.+.+-.+++.++
T Consensus 70 r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~--~P~y----------~~~s~~~l~~~f~~ia~a 125 (292)
T 2ojp_A 70 RIPVIAGTGANATAEAISLTQRFNDSGIVGCLTV--TPYY----------NRPSQEGLYQHFKAIAEH 125 (292)
T ss_dssp SSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEE--CCCS----------SCCCHHHHHHHHHHHHTT
T ss_pred CCcEEEecCCccHHHHHHHHHHHHhcCCCEEEEC--CCCC----------CCCCHHHHHHHHHHHHHh
Confidence 4799999988899999999999877 89999884 2332 113556666666666665
|
| >2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A* | Back alignment and structure |
|---|
Probab=80.82 E-value=2.4 Score=37.01 Aligned_cols=82 Identities=11% Similarity=0.090 Sum_probs=50.0
Q ss_pred CHHHHHH-HHHHHccCCCEEEecCCCchhhhhccccccccc---CCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEee
Q psy7344 125 DSKNLTE-AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ---DDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQ 200 (240)
Q Consensus 125 d~~~~~~-aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~---~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~ 200 (240)
+++...+ +.+++++|+|.||||.-- .+. |+.-. ..++.+..+++++++. .++|+|+-.
T Consensus 31 ~~~~a~~~a~~~v~~GAdIIDIGgeS-----TrP--Ga~~v~~~eE~~Rv~pvI~~l~~~-----------~~vpiSIDT 92 (314)
T 2vef_A 31 ALEQALQQARKLIAEGASMLDIGGES-----TRP--GSSYVEIEEEIQRVVPVIKAIRKE-----------SDVLISIDT 92 (314)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCC------------CHHHHHHHHHHHHHHHHHHHHH-----------CCCEEEEEC
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCc-----CCC--CCCCCCHHHHHHHHHHHHHHHHhh-----------CCceEEEeC
Confidence 4555554 444557799999998731 111 11111 3445555566667665 578999877
Q ss_pred eh---------------hc------HHHHHHHHhC-CCCeEEEecc
Q psy7344 201 MV---------------AK------RGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 201 r~---------------~~------~~~~~~~l~~-G~~~itih~R 224 (240)
.- .+ ..++++.+.+ |+..+.+|.|
T Consensus 93 ~~~~Va~aAl~aGa~iINDVsg~~~d~~m~~v~a~~~~~vvlmh~~ 138 (314)
T 2vef_A 93 WKSQVAEAALAAGADLVNDITGLMGDEKMPHVVAEARAQVVIMFNP 138 (314)
T ss_dssp SCHHHHHHHHHTTCCEEEETTTTCSCTTHHHHHHHHTCEEEEECCH
T ss_pred CCHHHHHHHHHcCCCEEEECCCCCCChHHHHHHHHcCCCEEEEecC
Confidence 61 11 1357777788 9999999986
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=80.77 E-value=4.7 Score=32.55 Aligned_cols=85 Identities=9% Similarity=-0.013 Sum_probs=48.8
Q ss_pred ceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 116 GHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 116 pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++++.+--.+.++..+.++.+...++.++++.+. -.+ +| |+.++.+ ++.. .+.+++
T Consensus 5 ~~ilalD~~~~~~~~~~~~~~~~~v~~~kv~~~~--f~~----~G------~~~i~~l----~~~~--------p~~~v~ 60 (216)
T 1q6o_A 5 MLQVALDNQTMDSAYETTRLIAEEVDIIEVGTIL--CVG----EG------VRAVRDL----KALY--------PHKIVL 60 (216)
T ss_dssp EEEEEECCSSHHHHHHHHHHHGGGCSEEEECHHH--HHH----HC------THHHHHH----HHHC--------TTSEEE
T ss_pred CeEEEECCCCHHHHHHHHHHhcccCCEEEECHHH--HHH----hC------HHHHHHH----HHhC--------CCCeEE
Confidence 3444443345555555555555556888887762 111 12 3344444 3320 014677
Q ss_pred eEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 196 IGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 196 vsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+-+|+-. ....+++.+.+ |+|.||+|+-.
T Consensus 61 lD~kl~d-ip~t~~~~~~~~Gad~itvh~~~ 90 (216)
T 1q6o_A 61 ADAKIAD-AGKILSRMCFEANADWVTVICCA 90 (216)
T ss_dssp EEEEECS-CHHHHHHHHHHTTCSEEEEETTS
T ss_pred EEEEecc-cHHHHHHHHHhCCCCEEEEeccC
Confidence 8888872 34445567778 99999999854
|
| >1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=80.63 E-value=4.7 Score=33.27 Aligned_cols=81 Identities=9% Similarity=-0.016 Sum_probs=49.1
Q ss_pred ceeEEeecCCHHHHHHHHHHHcc-C--CCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 116 GHSLMFCGNDSKNLTEAAKLAEP-H--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 116 pvivqi~g~d~~~~~~aa~~le~-~--~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
++++. -|..++.++.+.+++ + ++.+.++..- .. .+| |+. ++.+++. +.
T Consensus 5 ~lila---lD~~~l~~~~~~~~~~~~~v~~~Kv~~d~--~~----~~G------~~~----v~~l~~~----------~~ 55 (239)
T 1dbt_A 5 LPIIA---LDFASAEETLAFLAPFQQEPLFVKVGMEL--FY----QEG------PSI----VKQLKER----------NC 55 (239)
T ss_dssp SCEEE---CCCSSHHHHHHHTGGGTTSCCEEEECHHH--HH----HHT------HHH----HHHHHHT----------TC
T ss_pred CEEEE---eCCCCHHHHHHHHHHhcccCcEEEECHHH--HH----HhC------HHH----HHHHHHC----------CC
Confidence 45555 355556667777765 3 4777665541 11 112 333 3444442 15
Q ss_pred CeeeEEeee-hhcH-HHHHHHHhC-CCCeEEEeccc
Q psy7344 193 DINIGCPQM-VAKR-GHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 193 ~~pvsvK~r-~~~~-~~~~~~l~~-G~~~itih~R~ 225 (240)
.+++-+|+- +.+| ..+++.+.+ |+|.+|+|+=.
T Consensus 56 ~v~lD~kl~Dip~t~~~~~~~~~~~Gad~vtvH~~~ 91 (239)
T 1dbt_A 56 ELFLDLKLHDIPTTVNKAMKRLASLGVDLVNVHAAG 91 (239)
T ss_dssp EEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEGGG
T ss_pred cEEEEeccccchHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 678899998 3344 347888889 99999999754
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=80.58 E-value=3.1 Score=35.76 Aligned_cols=55 Identities=9% Similarity=-0.073 Sum_probs=39.0
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
..|+++.+++++..+..+.++..++ |+|++.+-. |.- ...+.+.+.+-.+.+.++
T Consensus 81 rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~--P~y----------~~~s~~~l~~~f~~va~a 136 (301)
T 1xky_A 81 RVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVA--PYY----------NKPSQEGMYQHFKAIAES 136 (301)
T ss_dssp SSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEEC--CCS----------SCCCHHHHHHHHHHHHHT
T ss_pred CceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcC--CCC----------CCCCHHHHHHHHHHHHHh
Confidence 4799999988899999999998876 899999842 321 112455665666666555
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=80.54 E-value=7.5 Score=34.38 Aligned_cols=82 Identities=12% Similarity=0.022 Sum_probs=57.7
Q ss_pred CceeEEeecCCHHHHHHHHH-HHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 115 CGHSLMFCGNDSKNLTEAAK-LAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~-~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
.|+...+...+++++.+.++ .+++ |+..+-+..|+ .+++.-.+.++++++++ +.
T Consensus 138 v~~~~t~~~~~~~~~~~~a~~~~~~~G~~~~K~Kvg~---------------~~~~~d~~~v~avR~a~---------g~ 193 (383)
T 3i4k_A 138 VDVTWALGVLPLDVAVAEIEERIEEFGNRSFKLKMGA---------------GDPAEDTRRVAELAREV---------GD 193 (383)
T ss_dssp EEBCEEECSCCHHHHHHHHHHHHHHHCCSEEEEECCS---------------SCHHHHHHHHHHHHHTT---------TT
T ss_pred EEEeEEeeCCCHHHHHHHHHHHHHhcCCcEEEEeeCC---------------CCHHHHHHHHHHHHHHc---------CC
Confidence 45555566678888766544 5676 89999988874 25555567788888762 13
Q ss_pred CeeeEEeee----hhcHHHHHHHHhC-CCCeEE
Q psy7344 193 DINIGCPQM----VAKRGHYGAYLQD-DWPLLT 220 (240)
Q Consensus 193 ~~pvsvK~r----~~~~~~~~~~l~~-G~~~it 220 (240)
++++.+... .++..++++.|++ |+++|-
T Consensus 194 ~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iE 226 (383)
T 3i4k_A 194 RVSLRIDINARWDRRTALHYLPILAEAGVELFE 226 (383)
T ss_dssp TSEEEEECTTCSCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 567777655 3567889999999 999883
|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
Probab=80.49 E-value=3.1 Score=35.99 Aligned_cols=82 Identities=15% Similarity=0.094 Sum_probs=50.0
Q ss_pred CHHHHHHHHH-HHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHH---HHhhhccccccCCCCCCCCeeeEEee
Q psy7344 125 DSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV---YSPNMVHFVIAEPHCDGNDINIGCPQ 200 (240)
Q Consensus 125 d~~~~~~aa~-~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv---~~~~~~~~~i~~~~~~~~~~pvsvK~ 200 (240)
|.+...+.++ ++++|+|.||||.-- .+. |+.-....|.+++++ +++++. .++|+++-.
T Consensus 61 ~~~~a~~~a~~~v~~GAdiIDIGgeS-----trP--ga~~v~~~eE~~RvvpvI~~l~~~-----------~~vpiSIDT 122 (297)
T 1tx2_A 61 EVDAAVRHAKEMRDEGAHIIDIGGES-----TRP--GFAKVSVEEEIKRVVPMIQAVSKE-----------VKLPISIDT 122 (297)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEESCC-----------CCCCCHHHHHHHHHHHHHHHHHH-----------SCSCEEEEC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCc-----CCC--CCCCCCHHHHHHHHHHHHHHHHhc-----------CCceEEEeC
Confidence 3455555444 456799999998641 112 222233455565555 666654 577888876
Q ss_pred eh---------------h-----c-HHHHHHHHhC-CCCeEEEecc
Q psy7344 201 MV---------------A-----K-RGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 201 r~---------------~-----~-~~~~~~~l~~-G~~~itih~R 224 (240)
.- . . ..++++.+.+ |+..+.+|.|
T Consensus 123 ~~~~V~~aAl~aGa~iINdvsg~~~d~~m~~~aa~~g~~vVlmh~~ 168 (297)
T 1tx2_A 123 YKAEVAKQAIEAGAHIINDIWGAKAEPKIAEVAAHYDVPIILMHNR 168 (297)
T ss_dssp SCHHHHHHHHHHTCCEEEETTTTSSCTHHHHHHHHHTCCEEEECCC
T ss_pred CCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHhCCcEEEEeCC
Confidence 60 1 1 2456777788 9999999975
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=80.48 E-value=3.4 Score=33.59 Aligned_cols=68 Identities=16% Similarity=0.186 Sum_probs=45.0
Q ss_pred eeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHH
Q psy7344 96 LQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175 (240)
Q Consensus 96 l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~ 175 (240)
...||+++..+. . ...|+++- +|=+++...++.+.+ ++.|||+|.|= . . ..| .+|+++++++++
T Consensus 137 ~~fdw~~l~~~~-~---~~~p~~LA-GGL~peNV~~ai~~~--~p~gVDvsSGv--E-~-~pG-----~KD~~ki~~fi~ 200 (205)
T 1nsj_A 137 KTFDWSLILPYR-D---RFRYLVLS-GGLNPENVRSAIDVV--RPFAVDVSSGV--E-A-FPG-----KKDHDSIKMFIK 200 (205)
T ss_dssp SCCCGGGTGGGG-G---GSSCEEEE-SSCCTTTHHHHHHHH--CCSEEEESGGG--E-E-ETT-----EECHHHHHHHHH
T ss_pred CccCHHHHHhhh-c---CCCcEEEE-CCCCHHHHHHHHHhc--CCCEEEECCce--e-c-CCC-----CcCHHHHHHHHH
Confidence 345898887642 1 13576543 334888877776665 57899999981 1 0 122 389999999999
Q ss_pred Hhhh
Q psy7344 176 SPNM 179 (240)
Q Consensus 176 ~~~~ 179 (240)
+++.
T Consensus 201 ~~r~ 204 (205)
T 1nsj_A 201 NAKG 204 (205)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 8764
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=80.45 E-value=2.6 Score=37.45 Aligned_cols=87 Identities=7% Similarity=0.034 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHH-ccCCCEEEecCCCchhhhh--cccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEee
Q psy7344 124 NDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAK--RGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQ 200 (240)
Q Consensus 124 ~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~--~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~ 200 (240)
.+++++.+.++.+ +.|+++|.|..||...... +.-+|.....+++...++++++++++ +.++++.+..
T Consensus 136 ~~~~~~~~~a~~~~~~Gf~~vKik~g~~~~g~~~~~~~~gg~~~~~~~~~~e~v~avr~a~---------G~d~~l~vD~ 206 (392)
T 2poz_A 136 DTPDEFARAVERPLKEGYGALKFYPLAQRVGSALQHVTRRSMSAEAIELAYRRVKAVRDAA---------GPEIELMVDL 206 (392)
T ss_dssp CSHHHHHHHTHHHHHTTCSEEEECCCCEEETTEEECCBTTBCCHHHHHHHHHHHHHHHHHH---------CTTSEEEEEC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccccccccccccccCCcchhhHHHHHHHHHHHHHhc---------CCCCEEEEEC
Confidence 5788887766554 6699999999886432000 00011111235566677888888863 1356777665
Q ss_pred e----hhcHHHHHHHHhC-CCCeE
Q psy7344 201 M----VAKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 201 r----~~~~~~~~~~l~~-G~~~i 219 (240)
. .++.+++++.|++ |+++|
T Consensus 207 n~~~~~~~a~~~~~~l~~~~i~~i 230 (392)
T 2poz_A 207 SGGLTTDETIRFCRKIGELDICFV 230 (392)
T ss_dssp TTCSCHHHHHHHHHHHGGGCEEEE
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEE
Confidence 4 3567889999999 98876
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=80.33 E-value=7.2 Score=33.82 Aligned_cols=79 Identities=11% Similarity=-0.029 Sum_probs=51.9
Q ss_pred CceeEEeecCCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCC
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGND 193 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~ 193 (240)
.|+-..+..++++++.+.++.+ +.|++.|.+..|. +++.-.+++++++++ | .+
T Consensus 129 v~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~d~~~v~avr~~------g----~~ 182 (345)
T 2zad_A 129 IETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGE----------------NLKEDIEAVEEIAKV------T----RG 182 (345)
T ss_dssp EEBCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHH------S----TT
T ss_pred eeeeEEecCCCHHHHHHHHHHHHHcCcCEEEEeecC----------------CHHHHHHHHHHHHhh------C----CC
Confidence 4554455557888887766654 6689999997773 344444566766664 1 34
Q ss_pred eeeEE--eee--hhcHHHHHHHHhC-CCC--eE
Q psy7344 194 INIGC--PQM--VAKRGHYGAYLQD-DWP--LL 219 (240)
Q Consensus 194 ~pvsv--K~r--~~~~~~~~~~l~~-G~~--~i 219 (240)
+++.+ +.+ .++..++++.|++ |++ +|
T Consensus 183 ~~l~vDan~~~~~~~a~~~~~~l~~~~i~~~~i 215 (345)
T 2zad_A 183 AKYIVDANMGYTQKEAVEFARAVYQKGIDIAVY 215 (345)
T ss_dssp CEEEEECTTCSCHHHHHHHHHHHHHTTCCCSEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCeeee
Confidence 44444 333 3567889999999 999 76
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=80.20 E-value=3.1 Score=37.04 Aligned_cols=78 Identities=14% Similarity=0.086 Sum_probs=47.9
Q ss_pred HHHHHccCCCEEEecCCCchh-hhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHH
Q psy7344 132 AAKLAEPHCDGIDINIGCPQM-VAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGA 210 (240)
Q Consensus 132 aa~~le~~~d~Idin~gCP~~-~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~ 210 (240)
+.+..+.|+|+|.++.| |-. .+.+...+. ...+.+.+.++.+..+. .++||.+-..+.+..++++
T Consensus 163 A~~a~~aGAD~I~vG~g-pGs~~~tr~~~g~-g~p~~~~l~~v~~~~~~------------~~iPVIA~GGI~~~~di~k 228 (366)
T 4fo4_A 163 ARALIEAGVSAVKVGIG-PGSICTTRIVTGV-GVPQITAIADAAGVANE------------YGIPVIADGGIRFSGDISK 228 (366)
T ss_dssp HHHHHHHTCSEEEECSS-CSTTBCHHHHHCC-CCCHHHHHHHHHHHHGG------------GTCCEEEESCCCSHHHHHH
T ss_pred HHHHHHcCCCEEEEecC-CCCCCCcccccCc-ccchHHHHHHHHHHHhh------------cCCeEEEeCCCCCHHHHHH
Confidence 33344559999999644 211 011110111 12456677777665433 4678888777777788888
Q ss_pred HHhCCCCeEEEec
Q psy7344 211 YLQDDWPLLTELG 223 (240)
Q Consensus 211 ~l~~G~~~itih~ 223 (240)
++..||+++.+-.
T Consensus 229 ala~GAd~V~vGs 241 (366)
T 4fo4_A 229 AIAAGASCVMVGS 241 (366)
T ss_dssp HHHTTCSEEEEST
T ss_pred HHHcCCCEEEECh
Confidence 8888999999843
|
| >1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A | Back alignment and structure |
|---|
Probab=80.03 E-value=5.7 Score=37.36 Aligned_cols=78 Identities=15% Similarity=0.112 Sum_probs=53.2
Q ss_pred CHHHHHHHH-HHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh-
Q psy7344 125 DSKNLTEAA-KLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV- 202 (240)
Q Consensus 125 d~~~~~~aa-~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~- 202 (240)
|.+...+.+ +++++|+|.||||.|- .....++.+++++..+++. .++|+++-..-
T Consensus 338 ~~~~a~~~A~~~v~~GAdiIDIgpg~------------~~v~~~ee~~rvv~~i~~~-----------~~vpisIDT~~~ 394 (566)
T 1q7z_A 338 NEEIVIKEAKTQVEKGAEVLDVNFGI------------ESQIDVRYVEKIVQTLPYV-----------SNVPLSLDIQNV 394 (566)
T ss_dssp CCHHHHHHHHHHHHTTCSEEEEECSS------------GGGSCHHHHHHHHHHHHHH-----------TCSCEEEECCCH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCC------------CCCCHHHHHHHHHHHHHhh-----------CCceEEEeCCCH
Confidence 344444434 4557799999999552 1236788888888888765 56777776650
Q ss_pred -----------------------hcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 203 -----------------------AKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 203 -----------------------~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+...++++.+.+ |+..|.+|.+-
T Consensus 395 ~v~eaal~~~~G~~iINdis~~~~~~~~~~~~~~~~g~~vV~m~~~~ 441 (566)
T 1q7z_A 395 DLTERALRAYPGRSLFNSAKVDEEELEMKINLLKKYGGTLIVLLMGK 441 (566)
T ss_dssp HHHHHHHHHCSSCCEEEEEESCHHHHHHHHHHHHHHCCEEEEESCSS
T ss_pred HHHHHHHHhcCCCCEEEECCcchhhHHHHHHHHHHhCCeEEEEeCCC
Confidence 112566777788 99999999774
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 240 | |||
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 100.0 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 99.9 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.16 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 99.14 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 98.69 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 98.46 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 98.42 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 98.2 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 97.88 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 97.68 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 97.53 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 97.48 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 97.35 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 96.9 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 96.44 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 95.49 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 95.33 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 95.14 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 94.33 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 93.93 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 93.63 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 92.94 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 92.43 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 92.01 | |
| d1f6ya_ | 262 | Methyltetrahydrofolate: corrinoid/iron-sulfur prot | 91.63 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 90.64 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 90.6 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 90.43 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 89.92 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 89.91 | |
| d3bofa1 | 260 | Cobalamin-dependent methionine synthase MetH, C-te | 89.64 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 88.96 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 88.78 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 88.28 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 88.18 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 88.1 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 87.31 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 86.92 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 85.48 | |
| d1km4a_ | 212 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 85.48 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 85.07 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 85.07 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 84.81 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 84.31 | |
| d1w3ia_ | 293 | 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus | 84.21 | |
| d1oyaa_ | 399 | Old yellow enzyme (OYE) {Lager yeast (Saccharomyce | 84.2 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 84.19 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 84.16 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 83.71 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 83.71 | |
| d1m5wa_ | 242 | Pyridoxine 5'-phosphate synthase {Escherichia coli | 83.44 | |
| d2czda1 | 206 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 83.0 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 81.0 | |
| d1znna1 | 254 | Pyridoxal biosynthesis lyase PdxS {Bacillus stearo | 80.79 | |
| d1nsja_ | 205 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 80.76 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 80.1 |
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.1e-33 Score=246.07 Aligned_cols=156 Identities=14% Similarity=0.163 Sum_probs=130.5
Q ss_pred cccccCCCccccccCchhhhhhhhcccceeeeCChhhHHH--h--------hhcccCCCCceeEEeecCCHHHHHHHHHH
Q psy7344 66 LFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTE--L--------GFKTRSHMCGHSLMFCGNDSKNLTEAAKL 135 (240)
Q Consensus 66 ~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~--i--------~~~~~~~~~pvivqi~g~d~~~~~~aa~~ 135 (240)
+..+|||++++|++|| ..+.. +|+.+.. +|+++. + .....+.+.|+++||+|+||+.+.+++++
T Consensus 2 ki~LAPM~g~td~~fR--~l~~~---~g~~~~~-Temi~~~~~~~~~~~~~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~ 75 (305)
T d1vhna_ 2 KVGLAPMAGYTDSAFR--TLAFE---WGADFAF-SEMVSAKGFLMNSQKTEELLPQPHERNVAVQIFGSEPNELSEAARI 75 (305)
T ss_dssp EEEECCCTTTCSHHHH--HHHHT---TTCCCEE-CSCEEHHHHHTTCHHHHHHSCCTTCTTEEEEEECSCHHHHHHHHHH
T ss_pred eEEEECcCCCccHHHH--HHHHH---HCcCEEE-ECCEEechhhhCChhhHhhccCCCCCCeEEEEeccchhhhhhhhhh
Confidence 3578999999999998 44443 3443322 343331 1 11223456899999999999999999999
Q ss_pred HccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh----hcHHHHHHH
Q psy7344 136 AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV----AKRGHYGAY 211 (240)
Q Consensus 136 le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~----~~~~~~~~~ 211 (240)
+++++|+||||+|||++.+.++|+|++||.||+++.+++++++++ +++|||+|+|+ ..+.++++.
T Consensus 76 ~~~~~~~IdlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~-----------~~~pvsvK~RlG~d~~~~~~~~~~ 144 (305)
T d1vhna_ 76 LSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKS-----------VSGKFSVKTRLGWEKNEVEEIYRI 144 (305)
T ss_dssp HTTTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHH-----------CSSEEEEEEESCSSSCCHHHHHHH
T ss_pred hhhheeeeeEEEEecchhhcccccceeeccCHHHHHHHhhhhhhh-----------cccccccccccCcccchhhHHHHH
Confidence 988999999999999999999999999999999999999999998 78999999993 457899999
Q ss_pred HhC-CCCeEEEecccccccCCCCCCCCCCC
Q psy7344 212 LQD-DWPLLTELGKMAMLVGILDNTGSWTP 240 (240)
Q Consensus 212 l~~-G~~~itih~R~~~~~~~~~~~adw~~ 240 (240)
+++ |+++|||||||+.|+| ++++||+.
T Consensus 145 l~~~G~~~itvH~Rt~~q~~--~~~a~~~~ 172 (305)
T d1vhna_ 145 LVEEGVDEVFIHTRTVVQSF--TGRAEWKA 172 (305)
T ss_dssp HHHTTCCEEEEESSCTTTTT--SSCCCGGG
T ss_pred HHHhCCcEEEechhhhhhcc--ccchhhhH
Confidence 999 9999999999999985 79999973
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=4.4e-25 Score=193.59 Aligned_cols=145 Identities=18% Similarity=0.146 Sum_probs=117.1
Q ss_pred ccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCccccc-----cCchhhh
Q psy7344 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDI-----NIGCPQM 85 (240)
Q Consensus 11 ~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~dl-----~~gC~~~ 85 (240)
.+.++|.||||||||++||+++++||+||+||+++.++|.++. ++.+.|+|+|.+.-... .+..++ +.| ...
T Consensus 76 ~~~~~~~IdlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~-~~~~~pvsvK~RlG~d~-~~~~~~~~~l~~~G-~~~ 152 (305)
T d1vhna_ 76 LSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELR-KSVSGKFSVKTRLGWEK-NEVEEIYRILVEEG-VDE 152 (305)
T ss_dssp HTTTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHH-HHCSSEEEEEEESCSSS-CCHHHHHHHHHHTT-CCE
T ss_pred hhhheeeeeEEEEecchhhcccccceeeccCHHHHHHHhhhhh-hhcccccccccccCccc-chhhHHHHHHHHhC-CcE
Confidence 3468999999999999999999999999999999999999999 57899999986532211 111111 557 477
Q ss_pred hhhhcccceee---eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccc
Q psy7344 86 VAKRGHYGAYL---QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGA 161 (240)
Q Consensus 86 i~~~g~~ga~l---~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~ 161 (240)
+++|||++... ..||+.|..++. ..|++++ +|+.+..++.++++. +||||||++|
T Consensus 153 itvH~Rt~~q~~~~~a~~~~i~~~~~-----~ipvi~N---GdI~s~~d~~~~l~~tg~dgVMiGRg------------- 211 (305)
T d1vhna_ 153 VFIHTRTVVQSFTGRAEWKALSVLEK-----RIPTFVS---GDIFTPEDAKRALEESGCDGLLVARG------------- 211 (305)
T ss_dssp EEEESSCTTTTTSSCCCGGGGGGSCC-----SSCEEEE---SSCCSHHHHHHHHHHHCCSEEEESGG-------------
T ss_pred EEechhhhhhccccchhhhHHHhhhh-----hhhhhcc---cccccHHHHHHHHHhcCCCeEehhHH-------------
Confidence 89999998732 678999887643 4787765 899999999999976 9999999999
Q ss_pred cccCCHHHHHHHHHHhhhc
Q psy7344 162 YLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 162 ~l~~~p~~i~~iv~~~~~~ 180 (240)
++.||+.+.++.+.+...
T Consensus 212 -al~nP~if~~i~~~l~~~ 229 (305)
T d1vhna_ 212 -AIGRPWIFKQIKDFLRSG 229 (305)
T ss_dssp -GTTCTTHHHHHHHHHHHS
T ss_pred -HHHhhhHhhhhhhhhcCC
Confidence 468999999998877665
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=99.16 E-value=3.9e-11 Score=103.29 Aligned_cols=101 Identities=14% Similarity=0.126 Sum_probs=86.7
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc--CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP--HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~--~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
+.|+++|+.+++++++.++++.+.+ ++|+||+|+|||+... .+..+..+++.+.+++++++..
T Consensus 98 ~~pii~si~~~~~~~~~~~~~~~~~~~g~d~ielN~~cP~~~~----~~~~~~~~~~~~~~~~~~v~~~----------- 162 (311)
T d1ep3a_ 98 ELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKH----GGQAFGTDPEVAAALVKACKAV----------- 162 (311)
T ss_dssp TSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGG----TTEEGGGCHHHHHHHHHHHHHH-----------
T ss_pred CCcccccccchhhhHHHHHHHHHhhcccccccccccCCCcccc----cccccccCHHHHHHHHHHHHhc-----------
Confidence 5799999999999999999888854 6899999999998642 2344578999999999999988
Q ss_pred CCeeeEEeee--hhcHHHHHHHHhC-CCCeEEEeccccccc
Q psy7344 192 NDINIGCPQM--VAKRGHYGAYLQD-DWPLLTELGKMAMLV 229 (240)
Q Consensus 192 ~~~pvsvK~r--~~~~~~~~~~l~~-G~~~itih~R~~~~~ 229 (240)
.++|+++|++ +.+..++++.+++ |++++++++++....
T Consensus 163 ~~~p~~vkl~~~~~~~~~~a~~~~~~~~~~~~~~n~~~~~~ 203 (311)
T d1ep3a_ 163 SKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVR 203 (311)
T ss_dssp CSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEECCCEEECC
T ss_pred cCCCeeeeecccccchHHHHHHHHHhhhheeEEEeeccccc
Confidence 7889999999 5678899999999 999999999986653
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.14 E-value=5.3e-11 Score=102.94 Aligned_cols=101 Identities=16% Similarity=0.167 Sum_probs=81.9
Q ss_pred CceeEE-eecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 115 CGHSLM-FCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 115 ~pvivq-i~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
.+++++ ..+.+.+++.++++.+++ ++|+|++|++||+....+ +.|..+..+|+.++++++++++. +
T Consensus 103 ~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~-~~~~~~~~~~~~~~~i~~~v~~~-----------~ 170 (312)
T d1gtea2 103 NIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGER-GMGLACGQDPELVRNICRWVRQA-----------V 170 (312)
T ss_dssp SEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC------SBGGGCHHHHHHHHHHHHHH-----------C
T ss_pred cccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCccccc-ccchhhhhhHHHHHHHHHHHhhc-----------c
Confidence 344444 456789999999998866 899999999999964433 46777788999999999999998 7
Q ss_pred CeeeEEeee--hhcHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 193 DINIGCPQM--VAKRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 193 ~~pvsvK~r--~~~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
++||++|+. +++..++++.+++ |+++|++++++..
T Consensus 171 ~~pv~vKl~~~~~~~~~i~~~~~~~g~~gi~~~n~~~~ 208 (312)
T d1gtea2 171 QIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSG 208 (312)
T ss_dssp SSCEEEEECSCSSCHHHHHHHHHHHTCSEEEECCCEEE
T ss_pred CCceeecccccchhHHHHHHHHHHhcccceEEEeeccc
Confidence 899999999 5678899999999 9999999998653
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=98.69 E-value=3e-09 Score=91.14 Aligned_cols=141 Identities=14% Similarity=0.153 Sum_probs=86.2
Q ss_pred CCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeeccccccc-----------CCCccccc-c-
Q psy7344 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAE-----------PHCDGIDI-N- 79 (240)
Q Consensus 13 ~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~la-----------p~~~~~dl-~- 79 (240)
.++|.||||+|||..+. .+.....+++++..++..+. ...+.|+++|...... -.++.+.+ |
T Consensus 124 ~g~d~ielN~~cP~~~~----~~~~~~~~~~~~~~~~~~v~-~~~~~p~~vkl~~~~~~~~~~a~~~~~~~~~~~~~~n~ 198 (311)
T d1ep3a_ 124 ANVKAIELNISCPNVKH----GGQAFGTDPEVAAALVKACK-AVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINT 198 (311)
T ss_dssp TTEEEEEEECCSEEGGG----TTEEGGGCHHHHHHHHHHHH-HHCSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEECCC
T ss_pred ccccccccccCCCcccc----cccccccCHHHHHHHHHHHH-hccCCCeeeeecccccchHHHHHHHHHhhhheeEEEee
Confidence 36899999999997543 44567789999999888887 4668898887421110 01111100 0
Q ss_pred Cchh-------hhhhhhccccee----e-eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecC
Q psy7344 80 IGCP-------QMVAKRGHYGAY----L-QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINI 147 (240)
Q Consensus 80 ~gC~-------~~i~~~g~~ga~----l-~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~ 147 (240)
.++. ..+..+ .++.. + ...+++++.+...+ +.|++.. +++.+..++.+++..|+|+|+++.
T Consensus 199 ~~~~~~~~~~~~~~~~~-~~~g~sG~~i~~~~l~~i~~i~~~~---~ipIig~---GGI~s~~Da~~~i~~GAd~V~ig~ 271 (311)
T d1ep3a_ 199 LMGVRFDLKTRQPILAN-ITGGLSGPAIKPVALKLIHQVAQDV---DIPIIGM---GGVANAQDVLEMYMAGASAVAVGT 271 (311)
T ss_dssp EEECCBCTTTCSBSSTT-SCEEEESGGGHHHHHHHHHHHHTTC---SSCEEEC---SSCCSHHHHHHHHHHTCSEEEECT
T ss_pred ccccccccccccccccc-cCCCCCCCcccchhHHHHHHHhhhc---ceeEEEe---CCcCCHHHHHHHHHcCCCEEEecH
Confidence 0000 011100 11111 1 11255566655433 4676654 888888999999988999999977
Q ss_pred CCchhhhhcccccccccCCHHHHHHHHHHhhh
Q psy7344 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM 179 (240)
Q Consensus 148 gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~ 179 (240)
| ++.+|+.+.+|.+.+.+
T Consensus 272 ~--------------~~~~P~i~~~I~~~L~~ 289 (311)
T d1ep3a_ 272 A--------------NFADPFVCPKIIDKLPE 289 (311)
T ss_dssp H--------------HHHCTTHHHHHHHHHHH
T ss_pred H--------------HHcCChHHHHHHHHHHH
Confidence 6 34577888888877655
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.46 E-value=3e-08 Score=85.21 Aligned_cols=147 Identities=14% Similarity=0.174 Sum_probs=87.4
Q ss_pred cccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCccccc-----cCch
Q psy7344 8 RIETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDI-----NIGC 82 (240)
Q Consensus 8 ~~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~dl-----~~gC 82 (240)
|..++.++|.++||++||.....+ +.|..+..+|+++.+++.++. +..+.|+++|..... .+..++ ..|
T Consensus 123 ~~~~~~gad~lelN~scPn~~~~~-~~~~~~~~~~~~~~~i~~~v~-~~~~~pv~vKl~~~~---~~~~~i~~~~~~~g- 196 (312)
T d1gtea2 123 RKAEASGADALELNLSCPHGMGER-GMGLACGQDPELVRNICRWVR-QAVQIPFFAKLTPNV---TDIVSIARAAKEGG- 196 (312)
T ss_dssp HHHHHTTCSEEEEECCCBCCCC------SBGGGCHHHHHHHHHHHH-HHCSSCEEEEECSCS---SCHHHHHHHHHHHT-
T ss_pred HHhccCCCCeEeeccCCCCccccc-ccchhhhhhHHHHHHHHHHHh-hccCCceeecccccc---hhHHHHHHHHHHhc-
Confidence 445667899999999999875444 578888999999999999998 477899998832111 000100 111
Q ss_pred hhhhhhhc------------------------ccceee-eCC----hhhHHHhhhcccCCCCceeEEeecCCHHHHHHHH
Q psy7344 83 PQMVAKRG------------------------HYGAYL-QDD----WPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAA 133 (240)
Q Consensus 83 ~~~i~~~g------------------------~~ga~l-~~d----~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa 133 (240)
...++.++ .+|.+. ..- .++++.+.... .+.|++.. +.+.+..+++
T Consensus 197 ~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~--~~ipIi~~---GGI~~~~d~~ 271 (312)
T d1gtea2 197 ADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARAL--PGFPILAT---GGIDSAESGL 271 (312)
T ss_dssp CSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHS--TTCCEEEE---SSCCSHHHHH
T ss_pred ccceEEEeecccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHc--CCCcEEEE---cCCCCHHHHH
Confidence 00011000 111111 000 22333333322 13566544 7788888999
Q ss_pred HHHccCCCEEEecCCCchhhhhccccccccc-CCHHHHHHHHHHhhh
Q psy7344 134 KLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ-DDWPLLTNLVYSPNM 179 (240)
Q Consensus 134 ~~le~~~d~Idin~gCP~~~~~~~g~G~~l~-~~p~~i~~iv~~~~~ 179 (240)
+++..|+|+|.+..+ ++ .-|..+.+|++.+++
T Consensus 272 ~~l~aGA~~Vqv~ta--------------~~~~G~~~i~~i~~~L~~ 304 (312)
T d1gtea2 272 QFLHSGASVLQVCSA--------------VQNQDFTVIQDYCTGLKA 304 (312)
T ss_dssp HHHHTTCSEEEESHH--------------HHTSCTTHHHHHHHHHHH
T ss_pred HHHHcCCCeeEECHh--------------hhccChHHHHHHHHHHHH
Confidence 999899999999443 33 348888888887765
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=98.42 E-value=5.3e-07 Score=76.93 Aligned_cols=98 Identities=10% Similarity=0.105 Sum_probs=77.8
Q ss_pred CCCceeEEeecCCHHHHHHHHHHHcc--CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCC
Q psy7344 113 HMCGHSLMFCGNDSKNLTEAAKLAEP--HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCD 190 (240)
Q Consensus 113 ~~~pvivqi~g~d~~~~~~aa~~le~--~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~ 190 (240)
.+.|++++|.+.+..++.+.++.++. ++|.++||.+||+... +..+..+++.+.+++++++..
T Consensus 92 ~~~pvi~si~~~~~~~~~~~~~~~~~~~~ad~ielNiscPn~~~-----~~~~~~~~~~~~~~~~~v~~~---------- 156 (311)
T d1juba_ 92 QEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPG-----EPQLAYDFEATEKLLKEVFTF---------- 156 (311)
T ss_dssp SSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSS-----CCCGGGCHHHHHHHHHHHTTT----------
T ss_pred cCCCceeeccccccchhHHHHHHHhhccccceeeeccccccccc-----cccccccHHHHHHHHHHhhcc----------
Confidence 35799999999998888888887754 4899999999998632 122457999999999999988
Q ss_pred CCCeeeEEeeeh----hcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 191 GNDINIGCPQMV----AKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 191 ~~~~pvsvK~r~----~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
.+.|+.+|+.. ......++.+.+ |++.++..+.+.
T Consensus 157 -~~~pv~vKl~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 196 (311)
T d1juba_ 157 -FTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIG 196 (311)
T ss_dssp -CCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEE
T ss_pred -cccceeecccccchhhHHHHHHHHHHhhccceEecccccc
Confidence 78899999992 234557777888 999998876544
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.20 E-value=3.6e-06 Score=71.77 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=67.7
Q ss_pred CCCceeEEeecCCHHHHHHHHHHH----ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCC
Q psy7344 113 HMCGHSLMFCGNDSKNLTEAAKLA----EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPH 188 (240)
Q Consensus 113 ~~~pvivqi~g~d~~~~~~aa~~l----e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~ 188 (240)
.+.|+++++.+.+.+++.+.++.+ +.++|.++||.+||+.. + +..+..+++.+.++++++++.
T Consensus 90 ~~~pii~si~g~~~~~~~~~~~~~~~~~~~~ad~iElNiScPn~~----~-~~~~~~~~~~~~~i~~~v~~~-------- 156 (312)
T d2b4ga1 90 SRKPLFLSMSGLSVEESVEMVKKLVPITKEKGTILELNLSCPNVP----G-KPQVGYDFDTTRTYLQKVSEA-------- 156 (312)
T ss_dssp TTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCST----T-CCCGGGCHHHHHHHHHHHHHH--------
T ss_pred cccceeccccccccccHHHHHHHHHHhhhhcccceeeccccCCcC----c-chhhhccHHHHHHHHHHhhcc--------
Confidence 357999999888877777666543 34699999999999963 1 223567999999999999998
Q ss_pred CCCCCeeeEEeeeh--h--cHHHHHHHHhC--CCCeEEE
Q psy7344 189 CDGNDINIGCPQMV--A--KRGHYGAYLQD--DWPLLTE 221 (240)
Q Consensus 189 ~~~~~~pvsvK~r~--~--~~~~~~~~l~~--G~~~iti 221 (240)
.++|+.+|+.. + .....+..+.+ +++.++.
T Consensus 157 ---~~~pi~vKl~p~~~~~~~~~~~~~~~~~~~~~~i~~ 192 (312)
T d2b4ga1 157 ---YGLPFGVKMPPYFDIAHFDMAAAVLNDFPLVKFITC 192 (312)
T ss_dssp ---HCSCEEEEECCCCCHHHHHHHHHHHTTCTTEEEEEE
T ss_pred ---ccccceeccccccchhHHHHHHHHHHhhhhhhhhhh
Confidence 78899999983 2 22344455544 5555554
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=2.3e-05 Score=68.18 Aligned_cols=105 Identities=10% Similarity=0.040 Sum_probs=64.4
Q ss_pred CCceeEEeecC----C-HHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCC
Q psy7344 114 MCGHSLMFCGN----D-SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPH 188 (240)
Q Consensus 114 ~~pvivqi~g~----d-~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~ 188 (240)
..|++++|.++ + .++...+.+.++.++|.+++|++||+..... .+.+.+..........+....+.
T Consensus 146 ~~pv~vsi~~~~~~~~~~~~~~~~~~~~~~~ad~lelNiScPn~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--- 216 (367)
T d1d3ga_ 146 GLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLR------SLQGKAELRRLLTKVLQERDGLR--- 216 (367)
T ss_dssp TCCEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEESCCTTSTTC----------CHHHHHHHHHHHHHHHHTSC---
T ss_pred CceEEEEeccccccHHHHHHHHHHHHHhhhcccccccccccccccccc------cccccchhhhHHHHHHHhhhhcc---
Confidence 46999999764 2 2345556666677899999999999963211 12233322222222111100000
Q ss_pred CCCCCeeeEEeeeh----hcHHHHHHHHhC-CCCeEEEecccccc
Q psy7344 189 CDGNDINIGCPQMV----AKRGHYGAYLQD-DWPLLTELGKMAML 228 (240)
Q Consensus 189 ~~~~~~pvsvK~r~----~~~~~~~~~l~~-G~~~itih~R~~~~ 228 (240)
...++|+.+|+.- .+..++++.+.+ |+++|++-.++...
T Consensus 217 -~~~~~Pv~vKlsP~~~~~~i~~~a~~~~~~g~~gi~~~nt~~~~ 260 (367)
T d1d3ga_ 217 -RVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSR 260 (367)
T ss_dssp -GGGCCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCC
T ss_pred -cccCCccccccCcccchhhhhhhHHHHHhhhhheeecccccccc
Confidence 0156899999992 356778999999 99999997776443
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.68 E-value=9.4e-05 Score=63.42 Aligned_cols=104 Identities=11% Similarity=-0.040 Sum_probs=65.9
Q ss_pred CCceeEEeecCC-------HHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccC
Q psy7344 114 MCGHSLMFCGND-------SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAE 186 (240)
Q Consensus 114 ~~pvivqi~g~d-------~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~ 186 (240)
+.|+.++|.++. .+++....+.++.++|+++||.+||+.. +. ..+.+.+.+......+.......
T Consensus 133 ~~~l~v~I~~~~~~~~~~a~~d~~~~~~~~~~~ad~iElNiScPN~~---g~---~~~~~~~~l~~~~~~~~~~~~~~-- 204 (336)
T d1f76a_ 133 DGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYAGYIAINISSPNTP---GL---RTLQYGEALDDLLTAIKNKQNDL-- 204 (336)
T ss_dssp CSEEEEEECCCTTSCGGGTHHHHHHHHHHHGGGCSEEEEECCCSSST---TG---GGGGSHHHHHHHHHHHHHHHHHH--
T ss_pred cceEEEEEeccCCcchHHHHHHHHHHHHHhhcccceeeecccchhhh---cc---cccccchhhccchhhhhhhhhhh--
Confidence 468888887642 3345566667777899999999999953 11 12345555555544332110000
Q ss_pred CCCCCCCeeeEEeeeh----hcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 187 PHCDGNDINIGCPQMV----AKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 187 ~~~~~~~~pvsvK~r~----~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
......++||.+|+.- ....+.++.+.+ |+++++.-..+
T Consensus 205 ~~~~~~~~Pv~vKlsp~~~~~~i~~~a~~~~~~g~~gv~~int~ 248 (336)
T d1f76a_ 205 QAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTT 248 (336)
T ss_dssp HHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCB
T ss_pred hhhccCcCCcccccchhhhhhhhhhhHHHHHhcCccchhhhhhh
Confidence 0000157899999992 356788888888 99999986654
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=97.53 E-value=0.00011 Score=63.14 Aligned_cols=90 Identities=16% Similarity=0.224 Sum_probs=66.8
Q ss_pred HHHHHHHHHHcc-CCCEEEecCC---------CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~g---------CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+++.++|+++.+ |+|||+|+.+ +|..-.....||.++-..--.+.+|++++++. .+.|+
T Consensus 143 ~~f~~AA~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~-----------~~~~~ 211 (337)
T d1z41a1 143 QEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQV-----------WDGPL 211 (337)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHH-----------CCSCE
T ss_pred HHHHHHHHHHHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhh-----------hcccc
Confidence 667778888755 8999999876 34433334457776544455678899999987 56688
Q ss_pred EEeee----------hhcHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 197 GCPQM----------VAKRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 197 svK~r----------~~~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
.++++ .++..++++.|++ |+|.+.++.....
T Consensus 212 ~vr~~~~~~~~~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~ 253 (337)
T d1z41a1 212 FVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALV 253 (337)
T ss_dssp EEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred eEEecccccccCccchhhhHHHHHHHHHcCCccccccccccc
Confidence 88887 2457889999999 9999999877644
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=97.48 E-value=0.00012 Score=64.58 Aligned_cols=91 Identities=11% Similarity=-0.005 Sum_probs=63.8
Q ss_pred HHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhcccccc-------------------------
Q psy7344 131 EAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIA------------------------- 185 (240)
Q Consensus 131 ~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~------------------------- 185 (240)
...+.+...+|.++||.+||+.. |..-+.+++.+.++++++++....+.
T Consensus 170 ~~~~~~~~~aD~~elNiScPNt~------glr~~~~~~~L~~ll~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (409)
T d1tv5a1 170 YCINKIGRYADYIAINVSSPNTP------GLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDESTYNEDNKIVEKKNNFN 243 (409)
T ss_dssp HHHHHHGGGCSEEEEECCCTTST------TGGGGGSHHHHHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHhhcccceeecccccccc------ccccccCHHHHHHHHHHHHHHHHhhhcccccccccccccchhhhhhccccc
Confidence 34444556899999999999963 22235799999999998876421100
Q ss_pred ---------------CCCCCCCCeeeEEeee--h--hcHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 186 ---------------EPHCDGNDINIGCPQM--V--AKRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 186 ---------------~~~~~~~~~pvsvK~r--~--~~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
.-+......||.+|+. + ++..+.++.+++ |+|++++...+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~ppi~vKlsPd~~~~~i~~i~~~~~~~g~dgii~~Nt~~~ 305 (409)
T d1tv5a1 244 KNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQ 305 (409)
T ss_dssp -------------CCCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSC
T ss_pred cccccccccchhhhhhccccccCCceEEEeCCCCCchhhHHHHHHHHhccccceeccccccc
Confidence 0011224568999998 3 346889999999 9999999887643
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.35 E-value=0.00028 Score=60.39 Aligned_cols=92 Identities=14% Similarity=0.141 Sum_probs=67.2
Q ss_pred HHHHHHHHHHcc-CCCEEEecCC---------CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~g---------CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+++.++|+++.+ |+|+|+|+.+ +|..-.....||..+-...-.+.++++++++.+ +.+++|
T Consensus 141 ~~f~~aA~ra~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~v---------g~d~~v 211 (330)
T d1ps9a1 141 DNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERV---------GNDFII 211 (330)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHH---------CSSSEE
T ss_pred HHHHHHHHHHHHhCcCeeeeccchHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHc---------CCCcee
Confidence 456777887765 8999999876 344333345577766555667789999999984 246788
Q ss_pred EEeee----------hhcHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 197 GCPQM----------VAKRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 197 svK~r----------~~~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
.+++. ++++.++++.|++ |+|.+.+......
T Consensus 212 ~~R~s~~d~~~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~ 253 (330)
T d1ps9a1 212 IYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHE 253 (330)
T ss_dssp EEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTT
T ss_pred EecccccccccCCCCHHHHHHHHHHHHHhhhhhhhccccccc
Confidence 88886 2457889999999 9999988765443
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=96.90 E-value=0.00049 Score=57.82 Aligned_cols=143 Identities=11% Similarity=0.086 Sum_probs=78.2
Q ss_pred CCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccc--------c-----CCCcccc-cc
Q psy7344 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIA--------E-----PHCDGID-IN 79 (240)
Q Consensus 14 ~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~l--------a-----p~~~~~d-l~ 79 (240)
+.|.+.||+.||.-... .-+..+++.+.+++.++. ...+.|+.+|..-.. + --.+.+. .|
T Consensus 120 ~ad~ielNiscPn~~~~-----~~~~~~~~~~~~~~~~v~-~~~~~pv~vKl~p~~~~~~~~~~~~~~~~~~~~~i~~~~ 193 (311)
T d1juba_ 120 FSGITELNLSCPNVPGE-----PQLAYDFEATEKLLKEVF-TFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVN 193 (311)
T ss_dssp CCSEEEEESCCCCSSSC-----CCGGGCHHHHHHHHHHHT-TTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECC
T ss_pred ccceeeecccccccccc-----ccccccHHHHHHHHHHhh-cccccceeecccccchhhHHHHHHHHHHhhccceEeccc
Confidence 47999999999975422 225678899999999998 467899988732100 0 0011110 01
Q ss_pred C---c---hhhh--hhh--hcccceeeeC-----ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEE
Q psy7344 80 I---G---CPQM--VAK--RGHYGAYLQD-----DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGID 144 (240)
Q Consensus 80 ~---g---C~~~--i~~--~g~~ga~l~~-----d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Id 144 (240)
. + .+.. ... ..++|..... ...++.++...+. .+.|++. .+.+.+..++.+++..|+|.|.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~gG~sg~~l~~~al~~i~~i~~~~~-~~~~Iig---~GGI~s~~Da~~~i~aGA~~Vq 269 (311)
T d1juba_ 194 SIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLK-PEIQIIG---TGGIETGQDAFEHLLCGATMLQ 269 (311)
T ss_dssp CEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSC-TTSEEEE---ESSCCSHHHHHHHHHHTCSEEE
T ss_pred cccccccccccccccccccccccCCccccccCchHHHHHHHHHHhcC-CCeeEEe---cCCcCCHHHHHHHHHcCCCcee
Confidence 0 0 0000 000 0011111100 0122223322221 1345544 4788888899999999999999
Q ss_pred ecCCCchhhhhccccccccc-CCHHHHHHHHHHhhhc
Q psy7344 145 INIGCPQMVAKRGHYGAYLQ-DDWPLLTNLVYSPNMV 180 (240)
Q Consensus 145 in~gCP~~~~~~~g~G~~l~-~~p~~i~~iv~~~~~~ 180 (240)
+..+ ++ .-|+.+.+|.+.+++-
T Consensus 270 l~ta--------------l~~~Gp~~i~~i~~~L~~~ 292 (311)
T d1juba_ 270 IGTA--------------LHKEGPAIFDRIIKELEEI 292 (311)
T ss_dssp ECHH--------------HHHHCTHHHHHHHHHHHHH
T ss_pred eeHh--------------hHhcChHHHHHHHHHHHHH
Confidence 9433 22 3477888887776653
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.44 E-value=0.0046 Score=52.62 Aligned_cols=88 Identities=16% Similarity=0.067 Sum_probs=61.8
Q ss_pred HHHHHHHHHcc-CCCEEEecCC---------CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeE
Q psy7344 128 NLTEAAKLAEP-HCDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIG 197 (240)
Q Consensus 128 ~~~~aa~~le~-~~d~Idin~g---------CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvs 197 (240)
++.++|++..+ |+|||+|+.+ +|..-...-.||..+-..--.+.+|++++++.+ +.++||.
T Consensus 150 ~f~~aA~~a~~aGfDgVEih~ahGyLl~qFls~~~N~R~D~yGGs~enR~Rf~~EIi~aIr~~v---------g~~~~i~ 220 (340)
T d1djqa1 150 FYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAV---------GSDCAIA 220 (340)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHH---------TTTSEEE
T ss_pred HHHHHHHHHHHhccceeeeeccccchhhhhhhhccccccccccccHHhhhHHHHHHHHHHHHHH---------hhhhhce
Confidence 56667777765 8999999987 455433345567766566667789999999973 1467888
Q ss_pred Eeeeh-----------hcHHHHHHHHhC-CCCeEEEecc
Q psy7344 198 CPQMV-----------AKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 198 vK~r~-----------~~~~~~~~~l~~-G~~~itih~R 224 (240)
+|+.. +.....+..+++ |+|.+.+..-
T Consensus 221 ~R~s~~~~~~~~~~~~e~~~~~~~~l~~~~vd~~~vs~g 259 (340)
T d1djqa1 221 TRFGVDTVYGPGQIEAEVDGQKFVEMADSLVDMWDITIG 259 (340)
T ss_dssp EEEEEECSSCTTSCCTTTHHHHHHHHHTTTCSEEEEEES
T ss_pred eeccccccccCCCCchhhhHHHHHHHHhhccceeeeeec
Confidence 88762 123445567778 9999888653
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=95.49 E-value=0.013 Score=49.82 Aligned_cols=103 Identities=17% Similarity=0.056 Sum_probs=66.3
Q ss_pred HHHhhhcccCC-CCceeEEee-------cCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHH
Q psy7344 103 LTELGFKTRSH-MCGHSLMFC-------GNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 173 (240)
Q Consensus 103 i~~i~~~~~~~-~~pvivqi~-------g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~i 173 (240)
+.+++.+++.. ..|+++.|. +.+.++..+.++.+++ +.|.+++..|...... ....|.....+
T Consensus 196 ~~Eiv~air~~~~~~~~vr~~~~~~~~~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~--------~~~~~~~~~~~ 267 (337)
T d1z41a1 196 LREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHAD--------INVFPGYQVSF 267 (337)
T ss_dssp HHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCC--------CCCCTTTTHHH
T ss_pred HHHHHHHHhhhhcccceEEecccccccCccchhhhHHHHHHHHHcCCcccccccccccccc--------cccCCcccHHH
Confidence 33444433321 357777765 3478888899999866 7999999888543211 11112222334
Q ss_pred HHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 174 VYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 174 v~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.+.+++. +++||.+-.++.+.....++|++ .+|.|.+ ||-
T Consensus 268 ~~~ik~~-----------~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~-gR~ 308 (337)
T d1z41a1 268 AEKIREQ-----------ADMATGAVGMITDGSMAEEILQNGRADLIFI-GRE 308 (337)
T ss_dssp HHHHHHH-----------HCCEEEECSSCCSHHHHHHHHHTTSCSEEEE-CHH
T ss_pred HHHHHHh-----------cCceEEEeCCcCCHHHHHHHHHCCCcceehh-hHH
Confidence 4455555 57788887777777777778888 6999998 874
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=95.33 E-value=0.0024 Score=53.64 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=36.3
Q ss_pred cCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecc
Q psy7344 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGP 65 (240)
Q Consensus 12 ~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~ 65 (240)
+.++|.|.||+.||.-.- +..+-.+++.+.+++.++. +..+.|+.+|.
T Consensus 118 ~~~ad~iElNiScPn~~~-----~~~~~~~~~~~~~i~~~v~-~~~~~pi~vKl 165 (312)
T d2b4ga1 118 KEKGTILELNLSCPNVPG-----KPQVGYDFDTTRTYLQKVS-EAYGLPFGVKM 165 (312)
T ss_dssp HHHCCEEEEECCCCCSTT-----CCCGGGCHHHHHHHHHHHH-HHHCSCEEEEE
T ss_pred hhcccceeeccccCCcCc-----chhhhccHHHHHHHHHHhh-ccccccceecc
Confidence 345799999999997421 2235578999999999988 46788988763
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.14 E-value=0.0048 Score=52.95 Aligned_cols=51 Identities=4% Similarity=-0.098 Sum_probs=38.8
Q ss_pred CCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
+.|++.. +.+.+..++.+++..|++.|.+.-+ .+...|..+.+|.+.+.+-
T Consensus 298 ~ipIig~---GGI~s~~Da~e~i~aGAs~VQi~Ta-------------~~~~Gp~ii~~I~~~L~~~ 348 (367)
T d1d3ga_ 298 RVPIIGV---GGVSSGQDALEKIRAGASLVQLYTA-------------LTFWGPPVVGKVKRELEAL 348 (367)
T ss_dssp CSCEEEE---SSCCSHHHHHHHHHHTCSEEEESHH-------------HHHHCTHHHHHHHHHHHHH
T ss_pred CccEEEE---CCCCCHHHHHHHHHcCCCHHHhhHH-------------HHhcCcHHHHHHHHHHHHH
Confidence 4565544 7888889999999999999998433 1246889999998887664
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=94.33 E-value=0.027 Score=48.19 Aligned_cols=85 Identities=14% Similarity=0.092 Sum_probs=54.5
Q ss_pred HHHHHHHHHcc-CCCEEEecCCCchhhh---------hcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeE
Q psy7344 128 NLTEAAKLAEP-HCDGIDINIGCPQMVA---------KRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIG 197 (240)
Q Consensus 128 ~~~~aa~~le~-~~d~Idin~gCP~~~~---------~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvs 197 (240)
.+.++|++..+ |+|+|+|..+--.-.. ..-.||..+-..--.+.+|++++++.+ .+-+|.
T Consensus 161 ~f~~AA~rA~~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~----------g~d~i~ 230 (363)
T d1vyra_ 161 DFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEW----------SADRIG 230 (363)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHS----------CGGGEE
T ss_pred HHHHHHHHHHHhccceeeecccCceeeeeeecCcccccccccccchhhhhHhHHHHHhhhhhhc----------CCCCcc
Confidence 56677777755 8999999877211111 112355544333336789999998873 122355
Q ss_pred Eeee--------------hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 198 CPQM--------------VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 198 vK~r--------------~~~~~~~~~~l~~-G~~~itih 222 (240)
+++. .+++.++++.|++ |+|.|.+-
T Consensus 231 ~r~s~~~~~~~~~~gg~~~~e~~~~~~~l~~~gvd~i~vs 270 (363)
T d1vyra_ 231 IRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMS 270 (363)
T ss_dssp EEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred eeecccccccchhhcccchHHHHHHHHHHHhcCCeeeecc
Confidence 5554 1356778899999 99999884
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.93 E-value=0.053 Score=45.62 Aligned_cols=96 Identities=8% Similarity=-0.041 Sum_probs=62.4
Q ss_pred CCceeEEeec-------CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhcccccc
Q psy7344 114 MCGHSLMFCG-------NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIA 185 (240)
Q Consensus 114 ~~pvivqi~g-------~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~ 185 (240)
+.|+.+.+.. .+.++..++++.+++ +.|.+++..|........ ...... ......+.+.+++.
T Consensus 208 d~~v~~R~s~~d~~~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~--~~~~~~--~~~~~~~~~~ik~~----- 278 (330)
T d1ps9a1 208 DFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPT--IATPVP--RGAFSWVTRKLKGH----- 278 (330)
T ss_dssp SSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCS--SSTTSC--TTTTHHHHHHHTTS-----
T ss_pred CceeEecccccccccCCCCHHHHHHHHHHHHHhhhhhhhcccccccccccc--cCCCCc--chhHHHHHHHHHhh-----
Confidence 4566666642 367888889999976 799999877743321111 111111 11223455566666
Q ss_pred CCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 186 ~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+++||.+-.++.+....-+.|++ .+|.|.+ ||-
T Consensus 279 ------~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~-gR~ 312 (330)
T d1ps9a1 279 ------VSLPLVTTNRINDPQVADDILSRGDADMVSM-ARP 312 (330)
T ss_dssp ------CSSCEEECSSCCSHHHHHHHHHTTSCSEEEE-STH
T ss_pred ------CCceEEEeCCCCCHHHHHHHHHCCCcchhHh-hHH
Confidence 67899988888777777778888 6999998 875
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=93.63 E-value=0.013 Score=51.02 Aligned_cols=62 Identities=8% Similarity=-0.097 Sum_probs=39.8
Q ss_pred hhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhh
Q psy7344 101 PLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM 179 (240)
Q Consensus 101 eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~ 179 (240)
.+++++...+. .+.|+|.. +.+.+..++.+++..|++.|.+.-| .+...|..+.+|.+.+.+
T Consensus 330 ~~v~~v~~~~~-~~ipIIGv---GGI~s~~Da~e~i~AGAs~VQv~T~-------------li~~Gp~~v~~I~~~L~~ 391 (409)
T d1tv5a1 330 KFICEMYNYTN-KQIPIIAS---GGIFSGLDALEKIEAGASVCQLYSC-------------LVFNGMKSAVQIKRELNH 391 (409)
T ss_dssp HHHHHHHHHTT-TCSCEEEE---SSCCSHHHHHHHHHTTEEEEEESHH-------------HHHHGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCceEEEE---CCCCCHHHHHHHHHcCCCHHhhhhH-------------HHhcChHHHHHHHHHHHH
Confidence 34444443332 23565543 7888888999999999999998444 112346677777776655
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=92.94 E-value=0.3 Score=39.79 Aligned_cols=103 Identities=10% Similarity=-0.063 Sum_probs=61.0
Q ss_pred CCceeEEeec--CCHHHHHHHHHHHcc-CCCEEEecCC-CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCC
Q psy7344 114 MCGHSLMFCG--NDSKNLTEAAKLAEP-HCDGIDINIG-CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHC 189 (240)
Q Consensus 114 ~~pvivqi~g--~d~~~~~~aa~~le~-~~d~Idin~g-CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~ 189 (240)
+.|+++-+-+ +++....+.++.+++ |+.||.|.=. .|-+.....+....+...-+.+.++..+....
T Consensus 76 ~lPv~~D~d~GyG~~~~v~~tv~~~~~aGaagi~iEDq~~pk~~~~~~~~~~~~~~~~~~~~ki~aa~~~~--------- 146 (275)
T d1s2wa_ 76 DVPILLDADTGYGNFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQ--------- 146 (275)
T ss_dssp SSCEEEECCSSCSSHHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHC---------
T ss_pred CCceeEecccccccchHHHHHHHHHHHhccceeEeeccccccccccccccccccccHHHHHHHHHhhhhhc---------
Confidence 5899998843 478888888888876 8999988753 12111111122222333444455555544433
Q ss_pred CCCCeeeEEeee-------hhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 190 DGNDINIGCPQM-------VAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 190 ~~~~~pvsvK~r-------~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
...++-+.+.+. ++++++-++++.+ |||.|-+|+.+
T Consensus 147 ~~~~~~i~ARtDa~~~~~gl~eai~R~~aY~eAGAD~vf~~~~~ 190 (275)
T d1s2wa_ 147 TDPDFCIVARVEAFIAGWGLDEALKRAEAYRNAGADAILMHSKK 190 (275)
T ss_dssp SSTTCEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCCS
T ss_pred cCcceeEEecchhhhhcCCHHHHHHHHHHHHhcCCCeeeecccc
Confidence 012333444433 3567777888888 99999999986
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=92.43 E-value=0.09 Score=43.99 Aligned_cols=48 Identities=13% Similarity=0.069 Sum_probs=36.1
Q ss_pred CCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHh
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSP 177 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~ 177 (240)
+.|++. .+.+.+..++.+.+..|++.|.+.-+ -+...|..+.+|++.+
T Consensus 289 ~ipIIG---~GGI~s~~Da~e~i~aGAsaVQv~Ta-------------l~~~Gp~ii~~I~~eL 336 (336)
T d1f76a_ 289 RLPIIG---VGGIDSVIAAREKIAAGASLVQIYSG-------------FIFKGPPLIKEIVTHI 336 (336)
T ss_dssp SSCEEE---ESSCCSHHHHHHHHHHTCSEEEESHH-------------HHHHCHHHHHHHHHHC
T ss_pred CCeEEE---ECCCCCHHHHHHHHHcCCcHHHHHHH-------------HHhcChHHHHHHHhhC
Confidence 356543 37888888999999999999988443 1246899999998753
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=92.01 E-value=0.41 Score=39.25 Aligned_cols=103 Identities=8% Similarity=-0.072 Sum_probs=63.4
Q ss_pred CCceeEEee---cCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCC
Q psy7344 114 MCGHSLMFC---GNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHC 189 (240)
Q Consensus 114 ~~pvivqi~---g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~ 189 (240)
+.|+++-+- |+++....+.++.++. |+.||.|-=. ..++-.....|..+...-+.+.+|..++...
T Consensus 77 ~~Pvi~D~d~GyG~~~~~v~~~v~~~~~aGvagi~iEDq-~~pk~~g~~~~~~~~~~~e~~~ki~aa~~a~--------- 146 (289)
T d1muma_ 77 SLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQ-VGAKRCGHRPNKAIVSKEEMVDRIRAAVDAK--------- 146 (289)
T ss_dssp CSCEEEECTTCSSSSHHHHHHHHHHHHHHTCSEEEEECB-CCCSSTTCCSCCCBCCHHHHHHHHHHHHHTC---------
T ss_pred CCCeeecccccccccchHHHHHHHHHHHCCCCEEEecCc-ccccccccccccceecHHHHHHHHHHHHHhc---------
Confidence 589999873 3457888888888876 8899887643 1111111112344455556666665554432
Q ss_pred CCCCeeeEEeee------hhcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 190 DGNDINIGCPQM------VAKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 190 ~~~~~pvsvK~r------~~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
.+.++-|.+.+. +++.++-+++..+ |||.|-+++.+.
T Consensus 147 ~~~d~~IiARTDa~~~~g~~eAi~R~~aY~eAGAD~vf~~~~~~ 190 (289)
T d1muma_ 147 TDPDFVIMARTDALAVEGLDAAIERAQAYVEAGAEMLFPEAITE 190 (289)
T ss_dssp SSTTSEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEETTCCC
T ss_pred CCcchhheeccccccccCHHHHHHHHHHhhhcCCcEEEecCCCC
Confidence 112344445444 3566777777888 999999998653
|
| >d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR species: Moorella thermoacetica [TaxId: 1525]
Probab=91.63 E-value=0.22 Score=40.29 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHH-HccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee
Q psy7344 124 NDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM 201 (240)
Q Consensus 124 ~d~~~~~~aa~~-le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r 201 (240)
.|++...+.|+. +++|+|.||||.| .......+.+.+++..+++. .++|+|+-.+
T Consensus 22 ~d~~~~~~~A~~m~~~GAdiIDIg~g------------~~~~~e~e~~~~vi~~l~~~-----------~~vpiSIDT~ 77 (262)
T d1f6ya_ 22 RDPAPVQEWARRQEEGGARALDLNVG------------PAVQDKVSAMEWLVEVTQEV-----------SNLTLCLDST 77 (262)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEBCC----------------CHHHHHHHHHHHHHTT-----------CCSEEEEECS
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeCCC------------CCCCCHHHHHHHHHHHHHHh-----------hcCCccccCC
Confidence 688887775554 5679999999865 11224556677788877776 7889998877
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=90.64 E-value=0.3 Score=41.79 Aligned_cols=85 Identities=13% Similarity=0.048 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehh
Q psy7344 124 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVA 203 (240)
Q Consensus 124 ~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~ 203 (240)
++..+...+..+++.|+|+|-++.|-=...+.+.-+|... .....+.++.++... ..+||.+-.-+.
T Consensus 198 GNV~T~e~a~~L~~~GaD~VkVGiGpGs~CtTr~~~GvG~-pq~sai~~~~~~~~~------------~~vpiIADGGi~ 264 (388)
T d1eepa_ 198 GNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGV-PQITAICDVYEACNN------------TNICIIADGGIR 264 (388)
T ss_dssp EEECSHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCC-CHHHHHHHHHHHHTT------------SSCEEEEESCCC
T ss_pred ccccCHHHHHHHHhcCCCeeeeccccccccccccccccCc-chHHHHHHHHHHhcc------------CCceEEeccccC
Confidence 4445555555666779999999998433444444444432 445555555554322 578999888888
Q ss_pred cHHHHHHHHhCCCCeEEE
Q psy7344 204 KRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 204 ~~~~~~~~l~~G~~~iti 221 (240)
..-+++++|..|||++.+
T Consensus 265 ~~Gdi~KAla~GAd~VMl 282 (388)
T d1eepa_ 265 FSGDVVKAIAAGADSVMI 282 (388)
T ss_dssp SHHHHHHHHHHTCSEEEE
T ss_pred cCCceeeeEEeccceeec
Confidence 889999999889999988
|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Probab=90.60 E-value=0.18 Score=42.54 Aligned_cols=134 Identities=17% Similarity=0.194 Sum_probs=77.4
Q ss_pred CCcccCCCchhHHHHHHHhhcccCCCceeecccccccC--CCcccc--ccCchhhh-hhhhccccee-----eeCChhhH
Q psy7344 34 YGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEP--HCDGID--INIGCPQM-VAKRGHYGAY-----LQDDWPLL 103 (240)
Q Consensus 34 ~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap--~~~~~d--l~~gC~~~-i~~~g~~ga~-----l~~d~eli 103 (240)
-|+++|++.+|+. ++. ..+.|+.+|--.+..+ |....+ ...|+.+. ++.+| +..| ..-|...+
T Consensus 183 I~A~~~~n~~LL~----~~g--~t~kpV~lKkG~~~s~~e~l~aae~i~~~Gn~~vilcERG-~~t~~~~~~~~lD~~~i 255 (338)
T d1vr6a1 183 IGARNAQNFRLLS----KAG--SYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERG-IRTFEKATRNTLDISAV 255 (338)
T ss_dssp ECGGGTTCHHHHH----HHH--TTCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECC-BCCSCCSSSSBCCTTHH
T ss_pred echhhccCHHHHH----Hhh--ccCCcEEecCccccchhhhhhhHHHHHhcCCccceeeecc-ccccccccccchhhccc
Confidence 4699999999954 555 4678999875444332 222222 24554443 45554 2211 13344445
Q ss_pred HHhhhcccCCCCceeEEe--ecCCHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc
Q psy7344 104 TELGFKTRSHMCGHSLMF--CGNDSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 104 ~~i~~~~~~~~~pvivqi--~g~d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
..++... ..|+++.- .+++.+....+++..- .|+||+.+... |.+.... .-|.+ +-+++.+.++++.+++.
T Consensus 256 ~~~k~~~---~lPVi~DpsHs~G~r~~v~~larAAvA~GadGl~iE~H-p~P~~Al-sDg~q-~l~~~~~~~ll~~l~~i 329 (338)
T d1vr6a1 256 PIIRKES---HLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVH-PEPEKAL-SDGKQ-SLDFELFKELVQEMKKL 329 (338)
T ss_dssp HHHHHHB---SSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBC-SCGGGCS-SCGGG-CBCHHHHHHHHHHHHHH
T ss_pred ceeeccc---cCceeeCCCCCCCchhHHHHHHHHHHHhCCCEEEEEeC-CCcccCC-CCccc-cCCHHHHHHHHHHHHHH
Confidence 4444322 35777643 2455555556666553 48999999988 6654322 23333 35899999998887764
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.43 E-value=0.24 Score=38.94 Aligned_cols=85 Identities=15% Similarity=0.172 Sum_probs=60.9
Q ss_pred eeEEeecCCHHHHHHHHHHHcc-CCCE--EEecCC--CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEP-HCDG--IDINIG--CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~-~~d~--Idin~g--CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
++++|...|...+.+..+.+++ ++|. +|+-=| +|+. .-.++.++.+ +..
T Consensus 4 IspSil~~d~~~l~~~i~~~~~~g~d~iHiDimDg~Fvpn~-----------s~g~~~i~~i----~~~----------- 57 (217)
T d2flia1 4 IAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNI-----------SFGADVVASM----RKH----------- 57 (217)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCB-----------CBCHHHHHHH----HTT-----------
T ss_pred EEeehhhcCHHHHHHHHHHHHHcCCCEEEEEcccCcCCCcc-----------ccCHHHHHHH----Hhc-----------
Confidence 4567777898888888888865 6774 555333 2321 2245555444 444
Q ss_pred CCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 192 NDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 192 ~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
+++|+-+-+.+.+...+.+.+.+ |++.|++|.-+-.
T Consensus 58 t~~~~dvHLMv~~P~~~i~~~~~~ga~~i~~H~E~~~ 94 (217)
T d2flia1 58 SKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTR 94 (217)
T ss_dssp CCSEEEEEEESSSGGGGHHHHHHHTCSEEEEEGGGCS
T ss_pred CCCceEeEEEecCHHHHHHHHHHcCCcEEEecccccc
Confidence 68899999998888889999999 9999999987643
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=89.92 E-value=0.46 Score=38.00 Aligned_cols=67 Identities=9% Similarity=-0.114 Sum_probs=48.3
Q ss_pred HHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHH
Q psy7344 132 AAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGA 210 (240)
Q Consensus 132 aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~ 210 (240)
+++.+++ ||..||- .|.|. |.|.. +.||+.++.|++. .++||.|---+-..-+.++
T Consensus 138 ~ak~Le~~Gc~avMP-lgsPI------GSg~G-l~n~~~l~~i~~~---------------~~vPvIvDAGIG~pSdAa~ 194 (251)
T d1xm3a_ 138 LARKLEELGVHAIMP-GASPI------GSGQG-ILNPLNLSFIIEQ---------------AKVPVIVDAGIGSPKDAAY 194 (251)
T ss_dssp HHHHHHHHTCSCBEE-CSSST------TCCCC-CSCHHHHHHHHHH---------------CSSCBEEESCCCSHHHHHH
T ss_pred HHHHHHHcCChhHHH-hhhhh------hcCCC-cCChHHHHHHHhc---------------CCccEEEecCCCCHHHHHH
Confidence 4555555 6666665 33343 33333 6899999888875 5679998888888888899
Q ss_pred HHhCCCCeEEE
Q psy7344 211 YLQDDWPLLTE 221 (240)
Q Consensus 211 ~l~~G~~~iti 221 (240)
+.|.|+|+|-+
T Consensus 195 AMElG~daVLv 205 (251)
T d1xm3a_ 195 AMELGADGVLL 205 (251)
T ss_dssp HHHTTCSEEEE
T ss_pred HHHccCCEEEe
Confidence 88889999876
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=89.91 E-value=0.78 Score=38.11 Aligned_cols=98 Identities=10% Similarity=-0.045 Sum_probs=56.4
Q ss_pred CCceeEEeecC--------CHHH-HHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccc
Q psy7344 114 MCGHSLMFCGN--------DSKN-LTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVI 184 (240)
Q Consensus 114 ~~pvivqi~g~--------d~~~-~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i 184 (240)
+.|+.+.|... +.+. ...+..+.+.++|.+++..|............ ....+.......+.+++.
T Consensus 216 ~~~i~~R~s~~~~~~~~~~~~e~~~~~~~~l~~~~vd~~~vs~g~~~~~~~~~~~~--~~~~~~~~~~~~~~ik~~---- 289 (340)
T d1djqa1 216 DCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPS--RFYQQGHTIPWVKLVKQV---- 289 (340)
T ss_dssp TSEEEEEEEEECSSCTTSCCTTTHHHHHHHHHTTTCSEEEEEESCSTTGGGTSCCT--TTCCTTTTHHHHHHHHTT----
T ss_pred hhhceeeccccccccCCCCchhhhHHHHHHHHhhccceeeeeeccccccccccccc--ccCCccccHHHHHHHHHH----
Confidence 45677666421 2222 23344444568999999888644322211111 111111122344455555
Q ss_pred cCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 185 AEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 185 ~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+++||.+-.++.+..+..+.+++ .+|.|.+ ||-
T Consensus 290 -------~~~pVi~~G~i~~~~~a~~~l~~G~aDlV~~-gR~ 323 (340)
T d1djqa1 290 -------SKKPVLGVGRYTDPEKMIEIVTKGYADIIGC-ARP 323 (340)
T ss_dssp -------CSSCEEECSCCCCHHHHHHHHHTTSCSBEEE-SHH
T ss_pred -------cCCeEEEECCCCCHHHHHHHHHCCCccchhh-HHH
Confidence 67788887777777777788888 6999998 774
|
| >d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Cobalamin-dependent methionine synthase MetH, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.64 E-value=0.51 Score=38.11 Aligned_cols=77 Identities=17% Similarity=0.159 Sum_probs=54.5
Q ss_pred CCHHHHHHHHH-HHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh
Q psy7344 124 NDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV 202 (240)
Q Consensus 124 ~d~~~~~~aa~-~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~ 202 (240)
+|.+...+.|+ +.+.|++.||||.|=|. -...+.+..+++.+... +++|+++-..-
T Consensus 37 ~d~d~~~~~A~~qv~~GA~iLDIn~~~~~------------~~e~~~m~~li~~l~~~-----------~d~PlsIDT~~ 93 (260)
T d3bofa1 37 GNEEIVIKEAKTQVEKGAEVLDVNFGIES------------QIDVRYVEKIVQTLPYV-----------SNVPLSLDIQN 93 (260)
T ss_dssp TCSHHHHHHHHHHHHTTCSEEEEECSSGG------------GSCHHHHHHHHHHHHHH-----------TCSCEEEECCC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeecCCch------------hhhHHHHHHHHHHHHhc-----------CCCCccccCCC
Confidence 45666666555 45779999999988321 14677888888888877 78898887761
Q ss_pred ------------------------hcHHHHHHHHhC-CCCeEEEec
Q psy7344 203 ------------------------AKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 203 ------------------------~~~~~~~~~l~~-G~~~itih~ 223 (240)
.+...++..+.+ |+..|.+|-
T Consensus 94 ~~v~eaaLk~~~G~~iINsis~e~~~~~~~~~l~~~yga~vI~l~~ 139 (260)
T d3bofa1 94 VDLTERALRAYPGRSLFNSAKVDEEELEMKINLLKKYGGTLIVLLM 139 (260)
T ss_dssp HHHHHHHHHHCSSCCEEEEEESCHHHHHHHHHHHHHHCCEEEEESC
T ss_pred HHHHHHHHHHhcCcceEeecccccchHHHHHHHHHhcCCCEEEEec
Confidence 122345677788 999998875
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=88.96 E-value=0.28 Score=41.65 Aligned_cols=88 Identities=14% Similarity=0.126 Sum_probs=53.8
Q ss_pred HHHHHHHHHHcc-CCCEEEecCCCchhh-------h--hcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINIGCPQMV-------A--KRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~gCP~~~-------~--~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+.+.++|+++.+ |+|+|+|..+--.-. + ..-.||..+-..--.+.+|++++++++ .+..|
T Consensus 163 ~~f~~AA~rA~~AGfDgVEIH~ahGYLl~qFLSp~~N~RtDeYGGSlENR~Rf~~EIi~aIR~~v----------g~~~v 232 (374)
T d1gwja_ 163 EDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVF----------GPERV 232 (374)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHH----------CGGGE
T ss_pred HHHHHHHHHHHHhCCCEEEeccchhhhHHHHHHhhcCccccccccchhhhhhhHHHHHHHHHHHc----------CCcce
Confidence 457777887755 899999986621111 1 112366655444456789999999984 22234
Q ss_pred EEeee-h------------hcHHHHHHHHhC-CCCeEEEecc
Q psy7344 197 GCPQM-V------------AKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 197 svK~r-~------------~~~~~~~~~l~~-G~~~itih~R 224 (240)
.+++. . ......+..++. |++.+.++.-
T Consensus 233 ~~r~~~~~~~~g~~~~~~~~~~~~~~~~ld~~~i~~~~~~~~ 274 (374)
T d1gwja_ 233 GIRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEP 274 (374)
T ss_dssp EEEECTTCCCTTCCCSCHHHHHHHHHHHHHHHTCSEEEEECS
T ss_pred eeeeeeeccccCCcccchHHHHHHhhccccccCceEEEeccC
Confidence 44443 1 113445667788 9999988753
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=88.78 E-value=0.84 Score=36.67 Aligned_cols=80 Identities=8% Similarity=-0.112 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-+ +|....-..+.-.++++.+.+.. +.++|+.+-.-
T Consensus 22 D~~~~~~~i~~l~~~Gv~gl~~~G~----------tGE~~~Ls~~Er~~l~~~~~~~~---------~~~~~vi~gv~~~ 82 (292)
T d1xkya1 22 DFAKTTKLVNYLIDNGTTAIVVGGT----------TGESPTLTSEEKVALYRHVVSVV---------DKRVPVIAGTGSN 82 (292)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESST----------TTTGGGSCHHHHHHHHHHHHHHH---------TTSSCEEEECCCS
T ss_pred CHHHHHHHHHHHHHCCCCEEEECeE----------ccchhhCCHHHHHHHHHHHHHHh---------CCCceEEEecCcc
Confidence 677778877776 558999988654 33334345555556777666541 13578877666
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih~ 223 (240)
..+++++++.+++ |+|++.+..
T Consensus 83 s~~~~i~~a~~a~~~Gad~ilv~p 106 (292)
T d1xkya1 83 NTHASIDLTKKATEVGVDAVMLVA 106 (292)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred cHHHHHHHHHHHHHcCCCEEEECC
Confidence 5677899999999 999999953
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=88.28 E-value=2 Score=35.54 Aligned_cols=129 Identities=8% Similarity=-0.029 Sum_probs=73.3
Q ss_pred ecccccccCCCccccccCchhhhhhhhcccceeee-CChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCC
Q psy7344 63 MGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQ-DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCD 141 (240)
Q Consensus 63 vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~-~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d 141 (240)
++.+.+.+||...++..+- ..+...|+.|..-. .+++...+....++....++.+.++ -+++....+..+++.++|
T Consensus 36 ~~iPIIaa~MdtV~~~~mA--~als~~GGlGvi~r~~~~e~~~~~i~~vk~~~~~v~~~vg-v~~~~~e~~~~li~agvd 112 (330)
T d1vrda1 36 INIPLVSAAMDTVTEAALA--KALAREGGIGIIHKNLTPDEQARQVSIVKKTRLLVGAAVG-TSPETMERVEKLVKAGVD 112 (330)
T ss_dssp ESSSEEECCCTTTCSHHHH--HHHHTTTCEEEECSSSCHHHHHHHHHHHHTCCBCCEEEEC-SSTTHHHHHHHHHHTTCS
T ss_pred cCCCEEeCCCCCcCCHHHH--HHHHHCCCeEEeecccchhhhHHHHHHHhhhccEEEEEEe-cCHHHHHHHHHHHHCCCC
Confidence 3445677899888877773 56777776666432 2344333333333322334555543 344555555556677888
Q ss_pred EEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEE
Q psy7344 142 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLT 220 (240)
Q Consensus 142 ~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~it 220 (240)
.|-|-.+ + .+++.+.+.++.+++.. .++||.+--- .+.+.++.|.+ |||+|.
T Consensus 113 ~ivId~A-------~--------G~~~~~~~~ik~ik~~~----------~~~~viaGnV--~t~~~a~~l~~~GaD~v~ 165 (330)
T d1vrda1 113 VIVIDTA-------H--------GHSRRVIETLEMIKADY----------PDLPVVAGNV--ATPEGTEALIKAGADAVK 165 (330)
T ss_dssp EEEECCS-------C--------CSSHHHHHHHHHHHHHC----------TTSCEEEEEE--CSHHHHHHHHHTTCSEEE
T ss_pred EEEEecC-------C--------CCchhHHHHHHHHHHhC----------CCCCEEeech--hHHHHHHHHHHcCCCEEe
Confidence 6544322 1 24445556666666652 3456655322 23567788888 999998
Q ss_pred E
Q psy7344 221 E 221 (240)
Q Consensus 221 i 221 (240)
+
T Consensus 166 V 166 (330)
T d1vrda1 166 V 166 (330)
T ss_dssp E
T ss_pred e
Confidence 8
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=88.18 E-value=0.89 Score=36.59 Aligned_cols=82 Identities=10% Similarity=0.092 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-+ +|....-..+.-.++++.+.+.. +.++|+.+=+-
T Consensus 21 D~~~l~~~i~~l~~~Gv~gi~~~G~----------tGE~~~Ls~eEr~~l~~~~~~~~---------~~~~pvi~gv~~~ 81 (295)
T d1hl2a_ 21 DKASLRRLVQFNIQQGIDGLYVGGS----------TGEAFVQSLSEREQVLEIVAEEA---------KGKIKLIAHVGCV 81 (295)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEESSG----------GGTGGGSCHHHHHHHHHHHHHHH---------TTTSEEEEECCCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeE----------ccchhhCCHHHHHHHHhhhHHhh---------ccccceeeccccc
Confidence 677788887776 448999988644 34444445666667777766641 13568877555
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
..+++++++.+++ |+|++.+....
T Consensus 82 s~~~~i~~a~~a~~~Gad~~~v~~p~ 107 (295)
T d1hl2a_ 82 STAESQQLAASAKRYGFDAVSAVTPF 107 (295)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred hhhHHHHHHHHHHhcCCceeeeeecc
Confidence 5678999999999 99999997654
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=88.10 E-value=0.9 Score=36.48 Aligned_cols=81 Identities=9% Similarity=-0.088 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-+ +|....-..+.=.++++.+.+.. ..++||.+=+-
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~v~Gs----------tGE~~~Ls~~Er~~~~~~~~~~~---------~~~~~vi~gv~~~ 80 (295)
T d1o5ka_ 20 DLESYERLVRYQLENGVNALIVLGT----------TGESPTVNEDEREKLVSRTLEIV---------DGKIPVIVGAGTN 80 (295)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSG----------GGTGGGCCHHHHHHHHHHHHHHH---------TTSSCEEEECCCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECee----------ccchhhCCHHHHHHHhhhhcccc---------ccCCceEeecccc
Confidence 677777777765 568999987433 33333233444456776665541 13578877666
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEecc
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih~R 224 (240)
..+++++++..++ |+|++.+...
T Consensus 81 st~~ai~~a~~A~~~Gad~v~v~pP 105 (295)
T d1o5ka_ 81 STEKTLKLVKQAEKLGANGVLVVTP 105 (295)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5677899999999 9999999765
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=87.31 E-value=0.75 Score=36.33 Aligned_cols=85 Identities=15% Similarity=0.135 Sum_probs=62.3
Q ss_pred CceeEEeecCCHHHHHHHHHHHcc-CCC--EEEecCC--CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCC
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLAEP-HCD--GIDINIG--CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHC 189 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~le~-~~d--~Idin~g--CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~ 189 (240)
.-++.+|...|...+.+..+.+++ ++| .|||-=| +|+. .-.|+.+ +.++..
T Consensus 11 ~~IspSIl~~d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~-----------t~~~~~v----~~i~~~--------- 66 (230)
T d1rpxa_ 11 IIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNI-----------TIGPLVV----DSLRPI--------- 66 (230)
T ss_dssp CEEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCB-----------CCCHHHH----HHHGGG---------
T ss_pred eEEEcchhhcCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCcc-----------ccChHHH----hhhhhc---------
Confidence 346778888999999998888865 666 4555333 2322 2245544 444444
Q ss_pred CCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 190 DGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 190 ~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+++|+-+-+.+.+...+.+.+.+ |++.|++|.-+
T Consensus 67 --t~~~~dvHLMv~~P~~~i~~~~~~g~~~i~~H~E~ 101 (230)
T d1rpxa_ 67 --TDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQ 101 (230)
T ss_dssp --CCSCEEEEEESSSHHHHHHHHHHTTCSEEEEECST
T ss_pred --cCceeeeeeeecchhhhHHHHhhcccceeEEeccc
Confidence 68899999999999999999999 99999999874
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=86.92 E-value=1.3 Score=36.13 Aligned_cols=33 Identities=0% Similarity=-0.260 Sum_probs=27.8
Q ss_pred CCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 192 NDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 192 ~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
.++||.+-..+.+-.|.+++|..|||++.+ ||.
T Consensus 230 ~~v~viadGGIr~g~Dv~KAlalGAdaV~i-Gr~ 262 (329)
T d1p0ka_ 230 PASTMIASGGLQDALDVAKAIALGASCTGM-AGH 262 (329)
T ss_dssp TTSEEEEESSCCSHHHHHHHHHTTCSEEEE-CHH
T ss_pred CCceEEEcCCcccHHHHHHHHHcCCCchhc-cHH
Confidence 357888877788888999999889999999 774
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=85.48 E-value=1.3 Score=33.51 Aligned_cols=77 Identities=13% Similarity=-0.070 Sum_probs=46.9
Q ss_pred HHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHH
Q psy7344 129 LTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHY 208 (240)
Q Consensus 129 ~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~ 208 (240)
..++.+..+.++|+|..+.+.-.. ........+.. .+++..+++. .++||.+-.-+.+..+.
T Consensus 129 ~~~a~~~~~~g~d~i~~~~~~~~~------~~~~~~~~~~~-~~~i~~~~~~-----------~~iPVia~GGI~t~~d~ 190 (222)
T d1y0ea_ 129 VEEAKNAARLGFDYIGTTLHGYTS------YTQGQLLYQND-FQFLKDVLQS-----------VDAKVIAEGNVITPDMY 190 (222)
T ss_dssp HHHHHHHHHTTCSEEECTTTTSST------TSTTCCTTHHH-HHHHHHHHHH-----------CCSEEEEESSCCSHHHH
T ss_pred HHHHHHHHHcCCCeEEEeccCCcc------cccCccchhhH-HHHHHHHHhc-----------CCCcEEEeCCCCCHHHH
Confidence 345555666789999775442111 11111122222 2334444444 67899888888788888
Q ss_pred HHHHhCCCCeEEEecc
Q psy7344 209 GAYLQDDWPLLTELGK 224 (240)
Q Consensus 209 ~~~l~~G~~~itih~R 224 (240)
.++++.|||++.+ |+
T Consensus 191 ~~~~~~GAdgV~i-Gs 205 (222)
T d1y0ea_ 191 KRVMDLGVHCSVV-GG 205 (222)
T ss_dssp HHHHHTTCSEEEE-CH
T ss_pred HHHHHcCCCEEEE-ch
Confidence 8888669999988 65
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=85.48 E-value=1.6 Score=33.51 Aligned_cols=84 Identities=7% Similarity=-0.043 Sum_probs=52.0
Q ss_pred eeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+++-+-..+.++..+.++.+.+.+++|.+|.. .-. . +| ++.++++ ++. .+.+|
T Consensus 5 i~lAlD~~~~~~a~~l~~~~~~~v~~iKig~~--l~~--~--~G------~~~v~~l----~~~-----------~~~~i 57 (212)
T d1km4a_ 5 LILAMDLMNRDDALRVTGEVREYIDTVKIGYP--LVL--S--EG------MDIIAEF----RKR-----------FGCRI 57 (212)
T ss_dssp EEEEECCSSHHHHHHHHHHHTTTCSEEEEEHH--HHH--H--HC------THHHHHH----HHH-----------HCCEE
T ss_pred eEEEecCCCHHHHHHHHHHhCCCCcEEEECHH--HHH--h--cC------HHHHHHH----HHh-----------cccce
Confidence 44554446777777878877778899998643 221 1 12 2344444 333 34466
Q ss_pred E--Eeee-hhcH-HHHHHHHhC-CCCeEEEeccccc
Q psy7344 197 G--CPQM-VAKR-GHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 197 s--vK~r-~~~~-~~~~~~l~~-G~~~itih~R~~~ 227 (240)
. .|+- +.+| ..+++.+.+ |+|.+|+|+-...
T Consensus 58 ~~D~K~~DIg~t~~~~~~~~~~~gad~~TVh~~~g~ 93 (212)
T d1km4a_ 58 IADFAVADIPETNEKICRATFKAGADAIIVHGFPGA 93 (212)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTCH
T ss_pred ehhhhhhccccHHHHhHhhhccccccEEEEeccCCh
Confidence 5 4444 3344 467788888 9999999986643
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.07 E-value=2.2 Score=34.16 Aligned_cols=81 Identities=12% Similarity=0.007 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.-.++++.+.+.+ +.++|+.+=.-
T Consensus 26 D~~~l~~~i~~li~~Gv~Gi~v~G~----------tGE~~~Ls~eEr~~l~~~~~~~~---------~~~~~vi~g~~~~ 86 (296)
T d1xxxa1 26 DTATAARLANHLVDQGCDGLVVSGT----------TGESPTTTDGEKIELLRAVLEAV---------GDRARVIAGAGTY 86 (296)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESST----------TTTTTTSCHHHHHHHHHHHHHHH---------TTTSEEEEECCCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECee----------ccchhhCCHHHHHHHHHHHHHHh---------ccccceEeccccc
Confidence 677777777766 558999977543 33333335555556776665541 13567776665
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEecc
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih~R 224 (240)
.++++++++..++ |+|++.+..-
T Consensus 87 s~~~~i~~a~~a~~~Gad~v~i~~P 111 (296)
T d1xxxa1 87 DTAHSIRLAKACAAEGAHGLLVVTP 111 (296)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred hhHHHHHHHHHHHHhcCCeEEEEec
Confidence 5678899999999 9999988543
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=85.07 E-value=0.58 Score=39.53 Aligned_cols=90 Identities=17% Similarity=0.075 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhc
Q psy7344 125 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAK 204 (240)
Q Consensus 125 d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~ 204 (240)
+..+...+..+++.|+|+|-++.|.=+..+.+.-+|-. ......+.++.++.++.. -+ .+..+||..-.-+..
T Consensus 159 NVaT~e~~~~L~~aGaD~vkVGIG~Gs~CTTr~~tGvG-~Pq~sAv~e~a~~~~~~~--~~----~~~~v~iiaDGGi~~ 231 (362)
T d1pvna1 159 NIVDGEGFRYLADAGADFIKIGIGGGSICITREQKGIG-RGQATAVIDVVAERNKYF--EE----TGIYIPVCSDGGIVY 231 (362)
T ss_dssp EECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHTCBC-CCHHHHHHHHHHHHHHHH--HH----HSEECCEEEESCCCS
T ss_pred cccCHHHHHHHHHhCCcEEEecccccccccchhhhccC-CchHHHHHHHHHHHHHhh--hh----cccCCceeeccccCc
Confidence 33333333344456899999998855566655555543 356666667766554310 00 013567877777888
Q ss_pred HHHHHHHHhCCCCeEEE
Q psy7344 205 RGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 205 ~~~~~~~l~~G~~~iti 221 (240)
.-+++++|..|||+|.+
T Consensus 232 ~gdi~KAla~GAd~VM~ 248 (362)
T d1pvna1 232 DYHMTLALAMGADFIML 248 (362)
T ss_dssp HHHHHHHHHTTCSEEEE
T ss_pred ccceeEEEEEeccceee
Confidence 89999999999999988
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=84.81 E-value=0.87 Score=37.22 Aligned_cols=80 Identities=8% Similarity=0.024 Sum_probs=45.3
Q ss_pred HHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee-hhcHHHH
Q psy7344 131 EAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-VAKRGHY 208 (240)
Q Consensus 131 ~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-~~~~~~~ 208 (240)
...+.++. +++++.++..||+......+... ....|+.++++ ++. .+.|+.+|.- -..+.+.
T Consensus 111 ~~~~~~~~~g~~ai~~~~~~~~~~~~~~~~~~-~~~~~~~i~~i----~~~-----------~~~~vivk~v~~~~~~~~ 174 (329)
T d1p0ka_ 111 QAKEAVEMIGANALQIHLNVIQEIVMPEGDRS-FSGALKRIEQI----CSR-----------VSVPVIVKEVGFGMSKAS 174 (329)
T ss_dssp HHHHHHHHTTCSEEEEEECTTTTC---------CTTHHHHHHHH----HHH-----------CSSCEEEEEESSCCCHHH
T ss_pred HHHHHHHHcCCCEEEecccccchhhhcccccc-ccchHHHHHHH----HHH-----------cCCCcEEEecCCcchHHH
Confidence 34455554 78999999999986544332211 22334444444 444 5678888876 2233455
Q ss_pred HHHHhC-CCCeEEEecccc
Q psy7344 209 GAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 209 ~~~l~~-G~~~itih~R~~ 226 (240)
++.+.+ |+|+|.+-++..
T Consensus 175 a~~~~~~GaD~i~v~~~gG 193 (329)
T d1p0ka_ 175 AGKLYEAGAAAVDIGGYGG 193 (329)
T ss_dssp HHHHHHHTCSEEEEEC---
T ss_pred HHHHHhcCCCEEEEcCCCC
Confidence 566677 999999966544
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=84.31 E-value=0.26 Score=37.76 Aligned_cols=43 Identities=2% Similarity=-0.109 Sum_probs=28.9
Q ss_pred hhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCC
Q psy7344 100 WPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIG 148 (240)
Q Consensus 100 ~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~g 148 (240)
++++.++...+ +.|+++. +.+.+..++.++++.|+|+|.++.+
T Consensus 164 ~~~i~~~~~~~---~iPVia~---GGI~t~~d~~~~~~~GAdgV~iGsA 206 (222)
T d1y0ea_ 164 FQFLKDVLQSV---DAKVIAE---GNVITPDMYKRVMDLGVHCSVVGGA 206 (222)
T ss_dssp HHHHHHHHHHC---CSEEEEE---SSCCSHHHHHHHHHTTCSEEEECHH
T ss_pred HHHHHHHHhcC---CCcEEEe---CCCCCHHHHHHHHHcCCCEEEEchh
Confidence 45555554432 4787755 5555566777888889999999654
|
| >d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: 2-keto-3-deoxy gluconate aldolase Eda species: Sulfolobus solfataricus [TaxId: 2287]
Probab=84.21 E-value=2.4 Score=33.88 Aligned_cols=80 Identities=13% Similarity=-0.108 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehh
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVA 203 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~ 203 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-+++.-.++++.+.+.. ...++...-....
T Consensus 18 D~~~~~~~i~~l~~~Gv~gi~~~Gt----------tGE~~~Ls~~Er~~~~~~~~~~~---------~~~i~gv~~~st~ 78 (293)
T d1w3ia_ 18 DKEKLKIHAENLIRKGIDKLFVNGT----------TGLGPSLSPEEKLENLKAVYDVT---------NKIIFQVGGLNLD 78 (293)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESST----------TTTGGGSCHHHHHHHHHHHHTTC---------SCEEEECCCSCHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECee----------chhhhhCCHHHHHHHHHHHHhhc---------cccccccccchhh
Confidence 677788888876 568999988544 33334345555557777665541 0112222222367
Q ss_pred cHHHHHHHHhC-CCCeEEEec
Q psy7344 204 KRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 204 ~~~~~~~~l~~-G~~~itih~ 223 (240)
+++++++..++ |++++.++.
T Consensus 79 ~~i~~a~~a~~~Ga~~~~~~~ 99 (293)
T d1w3ia_ 79 DAIRLAKLSKDFDIVGIASYA 99 (293)
T ss_dssp HHHHHHHHGGGSCCSEEEEEC
T ss_pred hhhhhhhhhhhhccccccccc
Confidence 78999999999 999998753
|
| >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Old yellow enzyme (OYE) species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
Probab=84.20 E-value=1.2 Score=37.84 Aligned_cols=64 Identities=16% Similarity=0.227 Sum_probs=40.6
Q ss_pred HHHHHHHHHcc-CCCEEEecCCCchhh-------h--hcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeE
Q psy7344 128 NLTEAAKLAEP-HCDGIDINIGCPQMV-------A--KRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIG 197 (240)
Q Consensus 128 ~~~~aa~~le~-~~d~Idin~gCP~~~-------~--~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvs 197 (240)
++.++|+++.+ |+|+|+|..+-=.-. + ..-.||..+-..--.+.+|++++++++ .+.||.
T Consensus 172 ~f~~AA~rA~~AGfDgVEIH~aHGYLl~qFLSp~tN~RtDeYGGSlENR~Rf~~Eii~aIR~~v----------g~~~Ig 241 (399)
T d1oyaa_ 172 EYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAI----------GHEKVG 241 (399)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHH----------CGGGEE
T ss_pred HHHHHHHHHHHhCCceEehhhhHHHHHHHhhcccccccccccCcchhhhhHHHHHHHHhhhhee----------eccCce
Confidence 45667777755 899999987511111 1 122356555333446689999999984 234899
Q ss_pred Eeee
Q psy7344 198 CPQM 201 (240)
Q Consensus 198 vK~r 201 (240)
+|+.
T Consensus 242 vRls 245 (399)
T d1oyaa_ 242 LRLS 245 (399)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9885
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=84.19 E-value=0.75 Score=38.68 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcc-CCCEEEecCCCch-------hhh--hcccccccccCCHHHHHHHHHHhhhcc
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINIGCPQ-------MVA--KRGHYGAYLQDDWPLLTNLVYSPNMVH 181 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~gCP~-------~~~--~~~g~G~~l~~~p~~i~~iv~~~~~~~ 181 (240)
+++..+|++..+ |+|||+|..+--. +.+ ..-.||..+-..--.+.+|++++++.+
T Consensus 158 ~~f~~aA~rA~~AGfDgVeIH~ahGyLl~QFlSp~tN~RtDeYGGsleNR~Rf~~Eii~aIr~~~ 222 (364)
T d1icpa_ 158 NEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEI 222 (364)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEeccCcchhhceehhhcCCcCccccchhhhhhhHHHHHhhhhhccc
Confidence 567777777755 8999999875111 111 112356655334445579999999874
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=84.16 E-value=1.8 Score=36.47 Aligned_cols=88 Identities=13% Similarity=-0.004 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcH
Q psy7344 126 SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKR 205 (240)
Q Consensus 126 ~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~ 205 (240)
..+..-+..+++.|+|+|-++.|==...+.+..+|-. ......+.++.++..+ ..+||.+-.-+...
T Consensus 156 V~T~e~a~~L~~aGaD~VkVGiG~Gs~CTTr~~tGvG-vPq~sai~~~~~~~~~------------~~~~iIADGGi~~~ 222 (365)
T d1zfja1 156 IATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVG-VPQVTAIYDAAAVARE------------YGKTIIADGGIKYS 222 (365)
T ss_dssp ECSHHHHHHHHHTTCSEEEECSSCCTTBCHHHHTCCC-CCHHHHHHHHHHHHHH------------TTCEEEEESCCCSH
T ss_pred cccHHHHHHHHhcCCceEEeeecccccccCcceeeee-ccchhHHHHHHHHHHh------------CCceEEecCCcCcc
Confidence 3333344455567999999987611233333333332 2445555555544333 46788887778889
Q ss_pred HHHHHHHhCCCCeEEEecccc
Q psy7344 206 GHYGAYLQDDWPLLTELGKMA 226 (240)
Q Consensus 206 ~~~~~~l~~G~~~itih~R~~ 226 (240)
-+++++|..|||++.+-++..
T Consensus 223 GDi~KAla~GAd~VMlG~~lA 243 (365)
T d1zfja1 223 GDIVKALAAGGNAVMLGSMFA 243 (365)
T ss_dssp HHHHHHHHTTCSEEEESTTTT
T ss_pred hhhhhhhhccCCEEEecchhc
Confidence 999999999999999966554
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=83.71 E-value=1.8 Score=34.70 Aligned_cols=81 Identities=11% Similarity=0.138 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHH-cc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee-
Q psy7344 125 DSKNLTEAAKLA-EP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r- 201 (240)
|.+.+.+.++.+ +. |++||-++-. +|....-..+.-.++++.+.+.. +.++||.+=+-
T Consensus 22 D~~~l~~~i~~li~~~Gv~gi~v~Gt----------tGE~~~Ls~~Er~~l~~~~~~~~---------~~~~~vi~gv~~ 82 (293)
T d1f74a_ 22 NEKGLRQIIRHNIDKMKVDGLYVGGS----------TGENFMLSTEEKKEIFRIAKDEA---------KDQIALIAQVGS 82 (293)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEESSG----------GGTGGGSCHHHHHHHHHHHHHHH---------TTSSEEEEECCC
T ss_pred CHHHHHHHHHHHHHhCCCCEEEECcc----------CcchhhCCHHHHhhhhheeeccc---------cCcccccccccc
Confidence 667778888764 56 8999988533 33333345555557776655541 13678887665
Q ss_pred --hhcHHHHHHHHhC-CCCeEEEecc
Q psy7344 202 --VAKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 202 --~~~~~~~~~~l~~-G~~~itih~R 224 (240)
..+++++++.+++ |+|++.+...
T Consensus 83 ~s~~~~iela~~a~~~Gad~i~~~pP 108 (293)
T d1f74a_ 83 VNLKEAVELGKYATELGYDCLSAVTP 108 (293)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEECCCC
T ss_pred ccHHHHHHHHHHHHHcCCCEeeccCc
Confidence 5678999999999 9999977443
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=83.71 E-value=3.4 Score=30.55 Aligned_cols=77 Identities=10% Similarity=-0.011 Sum_probs=47.3
Q ss_pred cCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh
Q psy7344 123 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV 202 (240)
Q Consensus 123 g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~ 202 (240)
-.+.++..+.++.+..++|.+++|. |.-.. + -++.+.++.+.. .+.++.....+
T Consensus 10 ~~~~~~~~~~~~~~~~~vdiikig~--~~~~~----~------G~~~i~~l~~~~--------------~~~~i~~d~k~ 63 (213)
T d1q6oa_ 10 NQTMDSAYETTRLIAEEVDIIEVGT--ILCVG----E------GVRAVRDLKALY--------------PHKIVLADAKI 63 (213)
T ss_dssp CSSHHHHHHHHHHHGGGCSEEEECH--HHHHH----H------CTHHHHHHHHHC--------------TTSEEEEEEEE
T ss_pred CCCHHHHHHHHHhcCCCccEEEeCe--ecccc----C------CHHHHHHHHHhc--------------ccccceeEEee
Confidence 3577888888888777899999864 33321 1 234555554431 23455544443
Q ss_pred hc-HHHHHHHHhC-CCCeEEEeccc
Q psy7344 203 AK-RGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 203 ~~-~~~~~~~l~~-G~~~itih~R~ 225 (240)
.+ ...+.+.+.+ |+|.+|+|+-.
T Consensus 64 ~d~~~~~~~~~~~~gad~vtvh~~~ 88 (213)
T d1q6oa_ 64 ADAGKILSRMCFEANADWVTVICCA 88 (213)
T ss_dssp CSCHHHHHHHHHHTTCSEEEEETTS
T ss_pred ccchHHHHHHHHHcCCCEEEEeccC
Confidence 22 2335566777 99999999864
|
| >d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Pyridoxine 5'-phosphate synthase family: Pyridoxine 5'-phosphate synthase domain: Pyridoxine 5'-phosphate synthase species: Escherichia coli [TaxId: 562]
Probab=83.44 E-value=0.34 Score=38.79 Aligned_cols=25 Identities=4% Similarity=-0.233 Sum_probs=22.4
Q ss_pred hhcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 202 VAKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 202 ~~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
..+.+++|+.+++ |||+||+|.|--
T Consensus 23 ~Pd~~~~a~~~~~~GadgITvH~R~D 48 (242)
T d1m5wa_ 23 YPDPVQAAFIAEQAGADGITVHLRED 48 (242)
T ss_dssp CSCHHHHHHHHHTTTCSEEEEECCTT
T ss_pred CCCHHHHHHHHHHcCCCeEEeCCCCC
Confidence 4688999999999 999999999963
|
| >d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=83.00 E-value=1.3 Score=33.74 Aligned_cols=77 Identities=9% Similarity=0.008 Sum_probs=48.7
Q ss_pred cCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeE--Eee
Q psy7344 123 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIG--CPQ 200 (240)
Q Consensus 123 g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvs--vK~ 200 (240)
..|.++..+.++.+.+.++++.+|.. .-. .. | ++.++++.+ . .+.+|. .|+
T Consensus 8 ~~~~~~a~~~~~~l~~~v~~iKvG~~--l~~--~~--G------~~~i~~l~~----~-----------~~~~if~DlK~ 60 (206)
T d2czda1 8 VYEGERAIKIAKSVKDYISMIKVNWP--LIL--GS--G------VDIIRRLKE----E-----------TGVEIIADLKL 60 (206)
T ss_dssp CCSHHHHHHHHHHHGGGCSEEEEEHH--HHH--HH--C------TTHHHHHHH----H-----------HCCEEEEEEEE
T ss_pred CCCHHHHHHHHHHhCCcccEEEECHH--HHh--hc--C------HHHHHHHHH----h-----------cCCeEEEEeee
Confidence 35778888888888778899998653 321 11 2 223444433 2 344655 444
Q ss_pred e-hhcH-HHHHHHHhC-CCCeEEEecccc
Q psy7344 201 M-VAKR-GHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 201 r-~~~~-~~~~~~l~~-G~~~itih~R~~ 226 (240)
- +.+| ...++.+.+ |+|.+|+|+...
T Consensus 61 ~Di~~t~~~~~~~~~~~gad~~Tvh~~~g 89 (206)
T d2czda1 61 ADIPNTNRLIARKVFGAGADYVIVHTFVG 89 (206)
T ss_dssp CSCHHHHHHHHHHHHHTTCSEEEEESTTC
T ss_pred eeecccchheehhhccccccEEEeeeccc
Confidence 4 4444 467788888 999999998653
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=81.00 E-value=1.9 Score=35.67 Aligned_cols=83 Identities=12% Similarity=0.028 Sum_probs=53.5
Q ss_pred HHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHH
Q psy7344 132 AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAY 211 (240)
Q Consensus 132 aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~ 211 (240)
+..+++.|+|+|-++.|-=...+.+..+|-. ..+...+.++.++. .. .++||.+-.-+.+.-+++++
T Consensus 153 a~~l~~~GaD~v~VGig~Gs~ctt~~~~G~g-~p~~sai~~~~~~~-~~-----------~~vpvIAdGGi~~~gdiakA 219 (330)
T d1vrda1 153 TEALIKAGADAVKVGVGPGSICTTRVVAGVG-VPQLTAVMECSEVA-RK-----------YDVPIIADGGIRYSGDIVKA 219 (330)
T ss_dssp HHHHHHTTCSEEEECSSCSTTCHHHHHHCCC-CCHHHHHHHHHHHH-HT-----------TTCCEEEESCCCSHHHHHHH
T ss_pred HHHHHHcCCCEEeeccccCccccccceeccc-cccchhHHHHHHHH-Hh-----------cCceEEecCCcccCCchhee
Confidence 3344456999999887722222333222221 13444555554443 23 57899988888899999999
Q ss_pred HhCCCCeEEEeccccc
Q psy7344 212 LQDDWPLLTELGKMAM 227 (240)
Q Consensus 212 l~~G~~~itih~R~~~ 227 (240)
|..|||++.+-.|...
T Consensus 220 la~GAd~Vm~Gs~fa~ 235 (330)
T d1vrda1 220 LAAGAESVMVGSIFAG 235 (330)
T ss_dssp HHTTCSEEEESHHHHT
T ss_pred eeccCceeeecchhee
Confidence 9999999999777643
|
| >d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: PdxS-like domain: Pyridoxal biosynthesis lyase PdxS species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.79 E-value=2.8 Score=33.21 Aligned_cols=72 Identities=15% Similarity=0.142 Sum_probs=46.6
Q ss_pred HHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHH
Q psy7344 132 AAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGA 210 (240)
Q Consensus 132 aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~ 210 (240)
-|+..++ |+-.||---.-|..+-..+ |-+-|.||+.+.+|.++ +.+||..|.|+....+ ++
T Consensus 13 qA~iAe~aGAvaVmaLervpadiR~~G--GvaRm~dp~~i~ei~~~---------------vsipvmak~righ~~e-aq 74 (254)
T d1znna1 13 QAKIAEAAGAVAVMALERVPADIRAAG--GVARMADPTVIEEVMNA---------------VSIPVMAKVRIGHYVE-AR 74 (254)
T ss_dssp HHHHHHHHTCSEEEECC---------C--CCCCCCCHHHHHHHHHH---------------CSSCEEEEEETTCHHH-HH
T ss_pred HHHHhhccCceeEeeeccCCHHHHhcC--CcccCCCHHHHHHHHHh---------------cccccccccCCCchHH-HH
Confidence 4455555 6667765444466532222 44558999999999986 6889999999766543 67
Q ss_pred HHhC-CCCeEEE
Q psy7344 211 YLQD-DWPLLTE 221 (240)
Q Consensus 211 ~l~~-G~~~iti 221 (240)
.|+. |+|++--
T Consensus 75 iLe~~~vd~ide 86 (254)
T d1znna1 75 VLEALGVDYIDE 86 (254)
T ss_dssp HHHHHTCSEEEE
T ss_pred hHHhhCCCcccH
Confidence 8999 9998864
|
| >d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermotoga maritima [TaxId: 2336]
Probab=80.76 E-value=1.6 Score=33.42 Aligned_cols=66 Identities=17% Similarity=0.252 Sum_probs=44.6
Q ss_pred eCChhhHHHhhhcccCCCCceeEEeecC-CHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHH
Q psy7344 97 QDDWPLLTELGFKTRSHMCGHSLMFCGN-DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175 (240)
Q Consensus 97 ~~d~eli~~i~~~~~~~~~pvivqi~g~-d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~ 175 (240)
..||+++..+... ..|++ |+|+ +++...++.+.+. ..+||+|.|= .. .. | .+|++.++++++
T Consensus 138 ~~dw~~~~~~~~~----~~~~~--LAGGl~~~Nv~~ai~~~~--p~gvDvsSgv---E~-~~--G---~KD~~ki~~f~~ 200 (205)
T d1nsja_ 138 TFDWSLILPYRDR----FRYLV--LSGGLNPENVRSAIDVVR--PFAVDVSSGV---EA-FP--G---KKDHDSIKMFIK 200 (205)
T ss_dssp CCCGGGTGGGGGG----SSCEE--EESSCCTTTHHHHHHHHC--CSEEEESGGG---EE-ET--T---EECHHHHHHHHH
T ss_pred ccchhhcccchhc----cccee--eecCCCHHHHHHHHHHhC--CCEEEEcCcc---cC-CC--C---ccCHHHHHHHHH
Confidence 4578877766432 24654 4555 8888877777664 5799999881 11 11 2 389999999999
Q ss_pred Hhhh
Q psy7344 176 SPNM 179 (240)
Q Consensus 176 ~~~~ 179 (240)
+++.
T Consensus 201 ~vr~ 204 (205)
T d1nsja_ 201 NAKG 204 (205)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 8764
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=80.10 E-value=1.3 Score=34.54 Aligned_cols=84 Identities=13% Similarity=0.108 Sum_probs=61.2
Q ss_pred eeEEeecCCHHHHHHHHHHHcc-CCCE--EEecCC--CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEP-HCDG--IDINIG--CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~-~~d~--Idin~g--CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
++.+|...|...+.+..+.+++ ++|. |||-=| +|+. .-.++ +++.++..
T Consensus 5 IspSil~~d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~-----------t~~~~----~~~~i~~~----------- 58 (221)
T d1tqja_ 5 VAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNI-----------TIGPL----IVDAIRPL----------- 58 (221)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCB-----------CBCHH----HHHHHGGG-----------
T ss_pred EEechhccCHHHHHHHHHHHHHcCCCEEEEECccCCccCcc-----------ccCcH----hHHhhhhc-----------
Confidence 5567888899999988888865 6774 555333 2332 11244 45555555
Q ss_pred CCeeeEEeeehhcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 192 NDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 192 ~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
+++|+-+-+.+.+...+.+.+.+ |++.+++|.-+-
T Consensus 59 t~~~~dvHLMv~~P~~~i~~~~~~g~~~i~~H~E~~ 94 (221)
T d1tqja_ 59 TKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHN 94 (221)
T ss_dssp CCSEEEEEEESSSGGGTHHHHHHHTCSEEEEECSTT
T ss_pred cCcceeeeEEEeCHHHHHHHHhhccceEEEEeeccc
Confidence 68899999998888899999999 999999998643
|