Psyllid ID: psy7365

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-
Protein Sequence
MFVVEYGTVRYDVTQLIRSFLPAANIHKISGSEVTYVLPQDPASMGAYVSLFESLSENRDKLGIDSYGISDTSLEEQPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSADAQTYLSLNLPVADLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLEDS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccEEEEEEcccccccHHHHHHHcccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcccccccccccccccHHHHHHHHHcccccccccEEEEEEHHHHHHHHHHHHHHHHHHccccEEEHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHcccccccccEEEEEEcccccHHHcccccccccccccEEcccEEEEccEEEEEEEEcccccccccccEEEEEcccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHcccEEEEEccEEEEEccHHHHHHcccccEEEEEEEcccccHHHHHHHHHHccccEEEEccccEEEEEEccccccHHHHHHHHHHHHHHcccccEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cEEEEccccccccccHHHHHHHHccHHHHccccccEEccccccccccEEEEEEEEEEEccccEEEEEcEEEEcccccEEEEEcccccccccccHHHHHHHHHccccccccEEEEEcccccHHHHHHcccEEEccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHcccEEEEccccHHHHHHHcccHHHHccccccccccHHHccccccEEEEcccEEEccccEEEEEEccHHHHHHHccEEEEEEccEEEEEEccccccccEEEEccccccccHHHHHHHEEEccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHcccccccccHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHccccHHHHHHHHHHHHHHccccccccccHHHHcccccccccccccccccHHHHHHHHHHHccccEEEEEEEcccccHccc
Coil and Loop (DISEMBL)
mfvveygtvryDVTQLIRSFlpaanihkisgsevtyvlpqdpasmGAYVSLFESLSenrdklgidsygisdtsleeqplgpsgitlglhtlgLEFVSRSMLmgmlpvssgtakiydhdirtDMTTIRRslgvcpqynaLFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIgdlgiphkrtslantlsggmqrklDNVKVWFNNKAWIAAVSFMNAANNVILraslpsnvsrddyaIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSfvpastvildeptsgvdpysrRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGklqccgssvflknsfARGYYLsldmksapqksyigycpqfdalndrltprehLEFYSRVRNLPSVLLNTIVNESLNKFAlghysdrevrtlsggnkRKLSTAIALlgntplifldeptsgmdpgaRRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVngqftclgsathlkskygqgysvkvrcaegrsadaQTYLSLNLPVADLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVdyslsqtsleds
Flexible Loop (DISEMBL)
mfvveygtvrydVTQLIRSFLPAANIHKISGSEVTYVLPQDPASMGAYVSLFESLSENRDKLGIDSYGISDTSLEEQPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAstvildeptsgvdpySRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSADAQTYLSLNLPVADLVETHATQLQYRISGAVSDLGALFRTLesakteaglivdyslsqtsleds
Low Complexity Region (SEG)
MFVVEYGTVRYDVTQLIRSFLPAANIHKISGSEVTYVLPQDPASMGAYVSLFESLSENRDKLGIDSYGISDTSLEEQPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSADAQTYLSLNLPVADLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLEDS
Disordered region (IsUnstruct)
*FVVEYGTVRYDVTQLIRSFLPAANIHKISGSEVTYVLPQDPASMGAYVSLFESL******LGIDSYGI***********PSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSADAQTYLSLNLPVADLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYS*********
Disordered Region (DISOPRED)
MFVVEYGTVRYDVTQLIRSFLP********************************LSENRDKLGIDSYGISDTSLEEQPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMAL**********LVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSADAQTYLSLNLPVADLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLE**
Disordered Region (DISEMBL)
MFVVEYGTVRYDVTQLIRSFLPAANIHKISGSEVTYVLPQDPASMGAYVSLFESLSENRDKLGIDSYGISDTSLEEQPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSADAQTYLSLNLPVADLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLEDS
Disordered Region (DISPRO)
MFVVEYGTVRYDVTQLIRSFLPAANIHKISGSEVTYVLPQDPASMGAYVSLFESLSENRDKLGIDSYGISDTSLEEQPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSADAQ*****NLPV********TQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQ******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFVVEYGTVRYDVTQLIRSFLPAANIHKISGSEVTYVLPQDPASMGAYVSLFESLSENRDKLGIDSYGISDTSLEEQPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSADAQTYLSLNLPVADLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLEDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	601	2.2.26 [Sep-21-2011]
O95477	2261	ATP-binding cassette sub-	yes	N/A	0.372	0.099	0.493	4e-61
P41233	2261	ATP-binding cassette sub-	yes	N/A	0.372	0.099	0.493	4e-61
P41234	2434	ATP-binding cassette sub-	no	N/A	0.405	0.100	0.483	9e-61
Q8R420	1704	ATP-binding cassette sub-	no	N/A	0.407	0.143	0.464	2e-60
Q7TNJ2	2170	ATP-binding cassette sub-	no	N/A	0.386	0.106	0.485	2e-59
Q91V24	2159	ATP-binding cassette sub-	no	N/A	0.387	0.107	0.474	3e-59
Q9ESR9	2434	ATP-binding cassette sub-	no	N/A	0.405	0.100	0.471	6e-59
Q99758	1704	ATP-binding cassette sub-	no	N/A	0.407	0.143	0.464	8e-59
Q9BZC7	2435	ATP-binding cassette sub-	no	N/A	0.376	0.092	0.504	9e-59
Q8IZY2	2146	ATP-binding cassette sub-	no	N/A	0.376	0.105	0.469	6e-57

>sp|O95477|ABCA1_HUMAN ATP-binding cassette sub-family A member 1 OS=Homo sapiens GN=ABCA1 PE=1 SV=3

 Score =  236 bits (602), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 113/229 (49%), Positives = 154/229 (67%), Gaps = 5/229 (2%)

Query: 374  IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
            +GYCPQFDA+ + LT REH+EF++ +R +P   +  +   ++ K  L  Y ++     SG
Sbjct: 1988 MGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEKYAGNYSG 2047

Query: 434  GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 493
            GNKRKLSTA+AL+G  P++FLDEPT+GMDP ARRFLW C    V EGR V+LTSH+MEEC
Sbjct: 2048 GNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSVVKEGRSVVLTSHSMEEC 2107

Query: 494  EALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSAD---AQTYLSLNLPVA 550
            EALCT++ IMVNG+F CLGS  HLK+++G GY++ VR A G + D    Q +  L  P +
Sbjct: 2108 EALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIA-GSNPDLKPVQDFFGLAFPGS 2166

Query: 551  DLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLE 599
             L E H   LQY++  ++S L  +F  L  +K     I DYS+SQT+L+
Sbjct: 2167 VLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLH-IEDYSVSQTTLD 2214

cAMP-dependent and sulfonylurea-sensitive anion transporter. Key gatekeeper influencing intracellular cholesterol transport.
Homo sapiens (taxid: 9606)

>sp|P41233|ABCA1_MOUSE ATP-binding cassette sub-family A member 1 OS=Mus musculus GN=Abca1 PE=1 SV=4

 Score =  236 bits (602), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 113/229 (49%), Positives = 154/229 (67%), Gaps = 5/229 (2%)

Query: 374  IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
            +GYCPQFDA+ + LT REH+EF++ +R +P   +  +   ++ K  L  Y ++     SG
Sbjct: 1988 MGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEKYASNYSG 2047

Query: 434  GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 493
            GNKRKLSTA+AL+G  P++FLDEPT+GMDP ARRFLW C    V EGR V+LTSH+MEEC
Sbjct: 2048 GNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIVKEGRSVVLTSHSMEEC 2107

Query: 494  EALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSAD---AQTYLSLNLPVA 550
            EALCT++ IMVNG+F CLGS  HLK+++G GY++ VR A G + D    Q +  L  P +
Sbjct: 2108 EALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIA-GSNPDLKPVQEFFGLAFPGS 2166

Query: 551  DLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLE 599
             L E H   LQY++  ++S L  +F  L  +K     I DYS+SQT+L+
Sbjct: 2167 VLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLH-IEDYSVSQTTLD 2214

cAMP-dependent and sulfonylurea-sensitive anion transporter. Key gatekeeper influencing intracellular cholesterol transport.

Mus musculus (taxid: 10090)

>sp|P41234|ABCA2_MOUSE ATP-binding cassette sub-family A member 2 OS=Mus musculus GN=Abca2 PE=1 SV=4

 Score =  235 bits (599), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 120/248 (48%), Positives = 158/248 (63%), Gaps = 4/248 (1%)

Query: 354  SFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNE 413
            +F  G+ +  D+    Q   +GYCPQFDAL D LT REHL+ Y+R+R +P      +V  
Sbjct: 2112 AFVNGHSVLKDLLQVQQS--LGYCPQFDALFDELTAREHLQLYTRLRGIPWKDEAQVVKW 2169

Query: 414  SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCI 473
            +L K  L  Y+D+   T SGGNKRKLSTAIAL+G    IFLDEPT+GMDP ARRFLW  I
Sbjct: 2170 ALEKLELTKYADKPAGTYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLI 2229

Query: 474  ERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAE 533
               +  GR V+LTSH+MEECEALCT+L IMVNG+  CLGS  HLK+++G GY + VR   
Sbjct: 2230 LDLIKTGRSVVLTSHSMEECEALCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTKS 2289

Query: 534  GRSA-DAQTYLSLNLPVADLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYS 592
             ++  D   + + N P A L E H T++QY++      L  +F  +E      G I DYS
Sbjct: 2290 SQNVKDVVRFFNRNFPEAMLKERHHTKVQYQLKSEHISLAQVFSKMEQVVGVLG-IEDYS 2348

Query: 593  LSQTSLED 600
            +SQT+L++
Sbjct: 2349 VSQTTLDN 2356

Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development.

Mus musculus (taxid: 10090)

>sp|Q8R420|ABCA3_MOUSE ATP-binding cassette sub-family A member 3 OS=Mus musculus GN=Abca3 PE=2 SV=3

 Score =  234 bits (596), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 117/252 (46%), Positives = 160/252 (63%), Gaps = 7/252 (2%)

Query: 353  NSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVN 412
            ++F  GY +S D+    Q+  +GYCPQFDAL D +T RE L  Y+R+R +P  L+N  V 
Sbjct: 1439 DAFVGGYSISSDIGKVRQR--MGYCPQFDALLDHMTGREMLVMYARLRGIPERLINACVE 1496

Query: 413  ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTC 472
             +L    L  ++++ V+T SGGNKRKLST IAL+G   +IFLDEP++GMDP ARR LW  
Sbjct: 1497 NTLRGLLLEPHANKLVKTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDT 1556

Query: 473  IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCA 532
            + RA   G+ +++TSH+MEECEALCT+L IMV GQF CLGS  HLKSK+G GYS++ +  
Sbjct: 1557 VARARESGKAIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGYSLQAKVR 1616

Query: 533  EGRSADA----QTYLSLNLPVADLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLI 588
                 DA    + ++ L  P + L + H   + Y + G       +F  LE AK + G +
Sbjct: 1617 SEGKQDALEEFKAFVDLTFPGSILEDEHQDMVHYHLPGCDLSWAKVFGILEKAKEKYG-V 1675

Query: 589  VDYSLSQTSLED 600
             DYS+SQ SLE 
Sbjct: 1676 DDYSVSQISLEQ 1687

Plays an important role in the formation of pulmonary surfactant, probably by transporting lipids such as cholesterol.

Mus musculus (taxid: 10090)

>sp|Q7TNJ2|ABCA7_RAT ATP-binding cassette sub-family A member 7 OS=Rattus norvegicus GN=Abca7 PE=1 SV=1

 Score =  230 bits (586), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 114/235 (48%), Positives = 161/235 (68%), Gaps = 3/235 (1%)

Query: 367  SAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDR 426
            SA  +S +GYCPQ DA+ D LT REHLE ++R+R +P   +       L +  L  Y+DR
Sbjct: 1888 SAAHRS-MGYCPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYADR 1946

Query: 427  EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 486
               T SGGNKRKL+TA+AL+G+  ++FLDEPT+GMDP ARRFLW  +   V EGR V+LT
Sbjct: 1947 PAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNNLLSVVREGRSVVLT 2006

Query: 487  SHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSADAQTYLSLN 546
            SH+MEECEALCT+L IMVNG+F CLGSA HLKS++G G+++ +R    +   A  ++   
Sbjct: 2007 SHSMEECEALCTRLAIMVNGRFRCLGSAQHLKSRFGAGHTLTLRVPPDQPEPAIAFIVTT 2066

Query: 547  LPVADLVETHATQLQYRI-SGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLED 600
             P A+L E H ++L++++  G    L  +FR L +A+ +A  + D+S+SQT+LE+
Sbjct: 2067 FPDAELREVHGSRLRFQLPPGGGCTLARVFREL-AAQGKAHGVEDFSVSQTTLEE 2120

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Rattus norvegicus (taxid: 10116)

>sp|Q91V24|ABCA7_MOUSE ATP-binding cassette sub-family A member 7 OS=Mus musculus GN=Abca7 PE=1 SV=1

 Score =  229 bits (585), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 112/236 (47%), Positives = 161/236 (68%), Gaps = 3/236 (1%)

Query: 366  KSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSD 425
            +SA  +S +GYCPQ DA+ D LT REHLE ++R+R +P   +       L +  L  Y+D
Sbjct: 1876 RSAAHRS-MGYCPQSDAIFDLLTGREHLELFARLRGVPEAQVAQTALSGLVRLGLPSYAD 1934

Query: 426  REVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 485
            R   T SGGNKRKL+TA+AL+G+  ++FLDEPT+GMDP ARRFLW  +   V EGR V+L
Sbjct: 1935 RPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNSLLSVVREGRSVVL 1994

Query: 486  TSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSADAQTYLSL 545
            TSH+MEECEALCT+L IMVNG+F CLGS+ HLK ++G G+++ +R    +   A  ++ +
Sbjct: 1995 TSHSMEECEALCTRLAIMVNGRFRCLGSSQHLKGRFGAGHTLTLRVPPDQPEPAIAFIRI 2054

Query: 546  NLPVADLVETHATQLQYRI-SGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLED 600
              P A+L E H ++L++++  G    L  +FR L +A+  A  + D+S+SQT+LE+
Sbjct: 2055 TFPGAELREVHGSRLRFQLPPGGRCTLTRVFREL-AAQGRAHGVEDFSVSQTTLEE 2109

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Mus musculus (taxid: 10090)

>sp|Q9ESR9|ABCA2_RAT ATP-binding cassette sub-family A member 2 OS=Rattus norvegicus GN=Abca2 PE=1 SV=1

 Score =  229 bits (583), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 117/248 (47%), Positives = 157/248 (63%), Gaps = 4/248 (1%)

Query: 354  SFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNE 413
            +F  G+ +  D+    Q   +GYCPQFDAL D LT REHL+ Y+R+R +P      +V  
Sbjct: 2112 AFVNGHSVLKDLLQVQQS--LGYCPQFDALFDELTAREHLQLYTRLRGIPWKDEAQVVRW 2169

Query: 414  SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCI 473
            +L K  L   +D+   + SGGNKRKLSTAIAL+G    IFLDEPT+GMDP ARRFLW  I
Sbjct: 2170 ALEKLELTKCADKPAGSYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLI 2229

Query: 474  ERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAE 533
               +  GR V+LTSH+MEECEA+CT+L IMVNG+  CLGS  HLK+++G GY + VR   
Sbjct: 2230 LDLIKTGRSVVLTSHSMEECEAVCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTKS 2289

Query: 534  GRSA-DAQTYLSLNLPVADLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYS 592
             ++  D   + + N P A L E H T++QY++      L  +F  +E      G I DYS
Sbjct: 2290 SQNVKDVVRFFNRNFPEAMLKERHHTKVQYQLKSEHISLAQVFSKMEHVVGVLG-IEDYS 2348

Query: 593  LSQTSLED 600
            +SQT+L++
Sbjct: 2349 VSQTTLDN 2356

Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development.

Rattus norvegicus (taxid: 10116)

>sp|Q99758|ABCA3_HUMAN ATP-binding cassette sub-family A member 3 OS=Homo sapiens GN=ABCA3 PE=1 SV=2

 Score =  228 bits (582), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 117/252 (46%), Positives = 161/252 (63%), Gaps = 7/252 (2%)

Query: 353  NSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVN 412
            ++F  G+ +S D+    Q+  IGYCPQFDAL D +T RE L  Y+R+R +P   +   V 
Sbjct: 1439 DAFVGGHRISSDVGKVRQR--IGYCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVE 1496

Query: 413  ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTC 472
             +L    L  ++++ VRT SGGNKRKLST IAL+G   +IFLDEP++GMDP ARR LW  
Sbjct: 1497 NTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDT 1556

Query: 473  IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRC- 531
            + RA   G+ +I+TSH+MEECEALCT+L IMV GQF CLGS  HLKSK+G GYS++ +  
Sbjct: 1557 VARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGYSLRAKVQ 1616

Query: 532  AEGRS---ADAQTYLSLNLPVADLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLI 588
            +EG+     + + ++ L  P + L + H   + Y + G       +F  LE AK + G +
Sbjct: 1617 SEGQQEALEEFKAFVDLTFPGSVLEDEHQGMVHYHLPGRDLSWAKVFGILEKAKEKYG-V 1675

Query: 589  VDYSLSQTSLED 600
             DYS+SQ SLE 
Sbjct: 1676 DDYSVSQISLEQ 1687

Plays an important role in the formation of pulmonary surfactant, probably by transporting lipids such as cholesterol.

Homo sapiens (taxid: 9606)

>sp|Q9BZC7|ABCA2_HUMAN ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3

 Score =  228 bits (581), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 115/228 (50%), Positives = 148/228 (64%), Gaps = 2/228 (0%)

Query: 374  IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
            +GYCPQ DAL D LT REHL+ Y+R+R +       +V  +L K  L  Y+D+   T SG
Sbjct: 2129 LGYCPQCDALFDELTAREHLQLYTRLRGISWKDEARVVKWALEKLELTKYADKPAGTYSG 2188

Query: 434  GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 493
            GNKRKLSTAIAL+G    IFLDEPT+GMDP ARRFLW  I   +  GR V+LTSH+MEEC
Sbjct: 2189 GNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDLIKTGRSVVLTSHSMEEC 2248

Query: 494  EALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSA-DAQTYLSLNLPVADL 552
            EALCT+L IMVNG+  CLGS  HLK+++G GY + VR    +S  D   + + N P A L
Sbjct: 2249 EALCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTKSSQSVKDVVRFFNRNFPEAML 2308

Query: 553  VETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLED 600
             E H T++QY++      L  +F  +E      G I DYS+SQT+L++
Sbjct: 2309 KERHHTKVQYQLKSEHISLAQVFSKMEQVSGVLG-IEDYSVSQTTLDN 2355

Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development.

Homo sapiens (taxid: 9606)

>sp|Q8IZY2|ABCA7_HUMAN ATP-binding cassette sub-family A member 7 OS=Homo sapiens GN=ABCA7 PE=1 SV=3

 Score =  222 bits (566), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 107/228 (46%), Positives = 149/228 (65%), Gaps = 2/228 (0%)

Query: 374  IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
            +GYCPQ DA+ + LT REHLE  +R+R +P   +       L +  L  Y+DR   T SG
Sbjct: 1869 MGYCPQSDAIFELLTGREHLELLARLRGVPEAQVAQTAGSGLARLGLSWYADRPAGTYSG 1928

Query: 434  GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 493
            GNKRKL+TA+AL+G+  ++FLDEPT+GMDP ARRFLW  +   V EGR V+LTSH+MEEC
Sbjct: 1929 GNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNSLLAVVREGRSVMLTSHSMEEC 1988

Query: 494  EALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSADAQTYLSLNLPVADLV 553
            EALC++L IMVNG+F CLGS  HLK ++  G+++ +R    RS  A  +++   P A+L 
Sbjct: 1989 EALCSRLAIMVNGRFRCLGSPQHLKGRFAAGHTLTLRVPAARSQPAAAFVAAEFPGAELR 2048

Query: 554  ETHATQLQYRI-SGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLED 600
            E H  +L++++  G    L  +F  L     E G + D+S+SQT LE+
Sbjct: 2049 EAHGGRLRFQLPPGGRCALARVFGELAVHGAEHG-VEDFSVSQTMLEE 2095

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	601
345323749	855	PREDICTED: retinal-specific ATP-binding	0.535	0.376	0.432	8e-77
410043445	1642	PREDICTED: LOW QUALITY PROTEIN: ATP-bind	0.647	0.236	0.365	5e-69
351704781	2749	ATP-binding cassette sub-family A member	0.514	0.112	0.414	1e-63
363743792	2137	PREDICTED: ATP-binding cassette sub-fami	0.417	0.117	0.496	4e-63
326671570	2323	PREDICTED: ATP-binding cassette sub-fami	0.371	0.095	0.526	4e-63
291228183	1821	PREDICTED: ATP-binding cassette transpor	0.404	0.133	0.493	5e-63
427794409	797	Putative lipid exporter abca1, partial [	0.402	0.303	0.515	6e-63
427784385	2338	Putative lipid exporter abca1 [Rhipiceph	0.402	0.103	0.515	8e-63
390344366	2717	PREDICTED: ATP-binding cassette sub-fami	0.374	0.082	0.513	1e-62
260810768	722	hypothetical protein BRAFLDRAFT_118238 [	0.420	0.350	0.488	5e-62

>gi|345323749|ref|XP_001511114.2| PREDICTED: retinal-specific ATP-binding cassette transporter-like [Ornithorhynchus anatinus]

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 171/395 (43%), Positives = 224/395 (56%), Gaps = 73/395 (18%)

Query: 272 AMSFV-PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLL 330
           AM+FV  A  V+LDEPTSGVDPYSRRSIW+LL+K         GRT+I++TH+MDEAD+L
Sbjct: 426 AMAFVGEAKVVVLDEPTSGVDPYSRRSIWDLLLKYR------PGRTLIMSTHHMDEADML 479

Query: 331 GDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSL--DMKSAPQKSYI-------------- 374
           GD+IAII+ GKL C G+ +FLKN F  G+YL+L   MK+ P    +              
Sbjct: 480 GDQIAIISQGKLYCSGTPLFLKNCFGSGFYLTLVRKMKTVPVPGRLQEVGAGLLGLGGGA 539

Query: 375 -------------------------------GYCPQFDALNDRLTPREHLEFYSRVRNLP 403
                                          GYCPQFDA++D LT REHL  Y+R+R +P
Sbjct: 540 LGSRRAIPAWKPDLSTLSSVLTHISDVHQATGYCPQFDAIDDLLTGREHLHLYARLRGVP 599

Query: 404 S---VLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFL------ 454
                ++     ES   + LG ++D    T SGG KRKLSTAIAL+G  PL+ L      
Sbjct: 600 MEEIAMVRGWQTESFRAWGLGLHADHLAGTYSGGTKRKLSTAIALVGCPPLVLLIRAPTT 659

Query: 455 DEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 514
           DEPT+GMDP +RR LW  I   + EGR V+LTSH+MEECEALCT+L IMV G F CLG+ 
Sbjct: 660 DEPTTGMDPLSRRLLWNTIVNIIREGRAVVLTSHSMEECEALCTRLAIMVKGTFQCLGTI 719

Query: 515 THLKSKYGQGYSVKVRCAEGRSA------DAQTYLSLNLPVADLVETHATQLQYRI---S 565
            HLK ++G GY V ++    +          + +L  + P +   E H   LQY+I   S
Sbjct: 720 QHLKRRFGDGYVVTMKIKPPKPGLLPDLNPVEQFLQTHFPGSIQTERHYNTLQYQISSSS 779

Query: 566 GAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLED 600
            + S L  +F+ L S K     I +YSL+QT+L+ 
Sbjct: 780 SSSSSLARIFQLLISNKDSLN-IEEYSLTQTTLDQ 813

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410043445|ref|XP_003951616.1| PREDICTED: LOW QUALITY PROTEIN: ATP-binding cassette sub-family A member 2, partial [Pan troglodytes]

 Score =  268 bits (686), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 172/471 (36%), Positives = 248/471 (52%), Gaps = 82/471 (17%)

Query: 199  KVWFNNKAWIAAVSFMNAANNVILRASLP-SNVSRDDYAIVAINHPMNLTHKQMALETLK 257
            +V++NNK + +  +++N+ NN ILRA+LP S  +   Y I   NHPMN T   ++L+ L 
Sbjct: 1105 QVFYNNKGYHSMPTYLNSLNNAILRANLPKSKGNPAAYGITVTNHPMNKTSASLSLDYLL 1164

Query: 258  KAGTSILVAVTVLFAMSFVPASTV---ILDEPT--------SGVDP---YSRRSIWELLI 303
            + GT +++A+ ++ AMSFVPAS V   + ++ T        SG +P   +    +W+++ 
Sbjct: 1165 Q-GTDVVIAIFIIVAMSFVPASFVVFLVAEKSTKAKHLQFVSGCNPIIYWLANYVWDMV- 1222

Query: 304  KVYYASHSLSGRTVILTTHYMDEADLLGDRIA---------------------------I 336
                    L  R  + T    D+ D+  +R                             I
Sbjct: 1223 --------LPARMPVSTKPVEDDVDVASERQRVLRGDADNDMVKIENLTKVYKSRKIGRI 1274

Query: 337  IAAGKL-------QCCG---------SSVFL----------KNSFARGYYLSLDMKSAPQ 370
            +A  +L       +C G         +S F             +F  G+ +  ++    Q
Sbjct: 1275 LAVDRLCLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSVLKELLQVQQ 1334

Query: 371  KSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRT 430
               +GYCPQ DAL D LT REHL+ Y+R+R +       +V  +L K  L  Y+D+   T
Sbjct: 1335 S--LGYCPQCDALFDELTAREHLQLYTRLRGISWKDEARVVKWALEKLELTKYADKPAGT 1392

Query: 431  LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
             SGGNKRKLSTAIAL+G    IFLDEPT+GMDP ARRFLW  I   +  GR V+LTSH+M
Sbjct: 1393 YSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDLIKTGRSVVLTSHSM 1452

Query: 491  EECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSA-DAQTYLSLNLPV 549
            EECEALCT+L IMVNG+  CLGS  HLK+++G GY + VR    +S  D   + + N P 
Sbjct: 1453 EECEALCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTKSSQSVKDVVRFFNRNFPE 1512

Query: 550  ADLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLED 600
            A L E H T++QY++      L  +F  +E      G I DYS+SQT+L++
Sbjct: 1513 AMLKERHHTKVQYQLKSEHISLAQVFSKMEQVSGVLG-IEDYSVSQTTLDN 1562

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|351704781|gb|EHB07700.1| ATP-binding cassette sub-family A member 2 [Heterocephalus glaber]

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 143/345 (41%), Positives = 202/345 (58%), Gaps = 36/345 (10%)

Query: 284  DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 343
            DEPT+G+DP +RR +W L++ +       +GR+V+LT+H M+E + L  R+AI+  G+L+
Sbjct: 2101 DEPTTGMDPKARRFLWNLILDLIK-----TGRSVVLTSHSMEECEALCTRLAIMVNGRLR 2155

Query: 344  CCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFD------ALNDRLTPR------- 390
            C GS   LKN F  GY +++  KS   +S       F+       L +R   +       
Sbjct: 2156 CLGSIQHLKNRFGDGYMITVRTKS--NQSVKDVVRFFNRNFPEAVLKERHHTKVQYQLKS 2213

Query: 391  EHL---EFYSRVRNLPSVL-----------LNTIVNESLNKFALGHYSDREVRTLSGGNK 436
            EH+   + +S++  +  VL           L+ +V  +L K  L  Y+D+   T SGGNK
Sbjct: 2214 EHISLAQVFSKMEQVAGVLGIEDYSVSQTTLDNVVKWALEKLELTKYADKPAGTYSGGNK 2273

Query: 437  RKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEAL 496
            RKLSTAIAL+G    IFLDEPT+GMDP ARRFLW  I   +  GR V+LTSH+MEECEAL
Sbjct: 2274 RKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDLIKTGRSVVLTSHSMEECEAL 2333

Query: 497  CTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSA-DAQTYLSLNLPVADLVET 555
            CT+L IMVNG+  CLGS  HLK+++G GY + VR    +S  D   + + N P A L E 
Sbjct: 2334 CTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTKSNQSVKDVVRFFNRNFPEAVLKER 2393

Query: 556  HATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLED 600
            H T++QY++      L  +F  +E      G I DYS+SQT+L++
Sbjct: 2394 HHTKVQYQLKSEHISLAQVFSKMEQVAGVLG-IEDYSVSQTTLDN 2437

Source: Heterocephalus glaber

Species: Heterocephalus glaber

Genus: Heterocephalus

Family: Bathyergidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|363743792|ref|XP_001233948.2| PREDICTED: ATP-binding cassette sub-family A member 1-like [Gallus gallus]

 Score =  249 bits (635), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 127/256 (49%), Positives = 167/256 (65%), Gaps = 5/256 (1%)

Query: 347  SSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVL 406
            + V L  ++ +G+ +  D+++  Q   +GYCPQFDA+ + LT REHL+FYSR+R +P   
Sbjct: 1833 TEVTLGEAWLKGHSVLTDLQAVHQN--MGYCPQFDAITELLTGREHLQFYSRLRGVPEEE 1890

Query: 407  LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR 466
               +    + K  LG ++DR   T SGGNKRKLSTAIALLG+ P+IFLDEPT+GMDP AR
Sbjct: 1891 TPRVAQWGIAKLGLGPHADRLAGTYSGGNKRKLSTAIALLGSPPIIFLDEPTTGMDPRAR 1950

Query: 467  RFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYS 526
            RFLW CI   V EGR V+LTSH+MEECEALCT++ IMVNG+F CLGS  HLK+++G GY+
Sbjct: 1951 RFLWDCILSLVREGRSVLLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYT 2010

Query: 527  VKVRCAEGRSA--DAQTYLSLNLPVADLVETHATQLQYRISGAVSDLGALFRTLESAKTE 584
            V VR      A    Q  +  + P   L E H + LQYR+      L  +F  L +A   
Sbjct: 2011 VVVRAVGSGPALGAVQHLMQCSFPGIALQEQHGSTLQYRLPSHACSLAHVFGVL-AAHCG 2069

Query: 585  AGLIVDYSLSQTSLED 600
             G I DYS+SQT+L+ 
Sbjct: 2070 RGPIQDYSVSQTTLDQ 2085

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326671570|ref|XP_001920862.3| PREDICTED: ATP-binding cassette sub-family A member 1 [Danio rerio]

 Score =  249 bits (635), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 121/230 (52%), Positives = 154/230 (66%), Gaps = 7/230 (3%)

Query: 374  IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
            +GYCPQFDA+ D LT REHLEFY+R+R +P   +  +    + K  L  Y+DRE    SG
Sbjct: 1973 MGYCPQFDAIIDLLTGREHLEFYARLRGVPESYVEKVAQWGVQKLGLSQYADREAGGYSG 2032

Query: 434  GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 493
            GNKRKLSTAIAL+G  P+IFLDEPT+GMDP A+RFLW CI   V EGR V+LTSH+MEEC
Sbjct: 2033 GNKRKLSTAIALIGAAPVIFLDEPTTGMDPKAKRFLWNCILSVVKEGRSVVLTSHSMEEC 2092

Query: 494  EALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVR----CAEGRSADAQTYLSLNLPV 549
            EALCT++ IMVNG+F CLGS  HLK+++G GY++ +R     AE    DA  Y+  + P 
Sbjct: 2093 EALCTRMAIMVNGRFQCLGSVQHLKNRFGDGYTIILRLSTPSAEPCPVDA--YIQNSFPG 2150

Query: 550  ADLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLE 599
              L E H   LQY++      L  +F  L +   E G I DYS+SQT+L+
Sbjct: 2151 IQLKERHQNVLQYQLPSQTCSLARVFEVLSNNYEELG-IADYSVSQTTLD 2199

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291228183|ref|XP_002734059.1| PREDICTED: ATP-binding cassette transporter subfamily A-like [Saccoglossus kowalevskii]

 Score =  248 bits (634), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 122/247 (49%), Positives = 166/247 (67%), Gaps = 4/247 (1%)

Query: 354  SFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNE 413
            ++  GY +  D +   Q+  IGYCPQFDAL D+LT RE +  Y+R+R +P   +  +V+ 
Sbjct: 1562 AYMGGYNILTDRRQVQQR--IGYCPQFDALIDKLTGRELIRMYARLRGIPPDTIEAVVDS 1619

Query: 414  SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCI 473
             ++   LG+++D+     SGGNKRK+STA A++GN P+IFLDEPT+GMDP ARRFLW  I
Sbjct: 1620 CISHLNLGNWADKLCGDYSGGNKRKVSTASAMVGNPPIIFLDEPTAGMDPRARRFLWNAI 1679

Query: 474  ERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRC-A 532
             R +  GRC++LTSH+MEECEALCT+L IMVNGQF CLGS  HLKS++G+GY + V+  A
Sbjct: 1680 TRLMKGGRCIVLTSHSMEECEALCTRLAIMVNGQFKCLGSTQHLKSRFGKGYMLMVKVDA 1739

Query: 533  EGRSADAQTYLSLNLPVADLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYS 592
            E  +   + +L+ + P   L+E HA  L Y+I  A      +F T+E  K    L  DYS
Sbjct: 1740 ETSTEPVKEFLNNSFPNLKLLEEHAGMLSYQIENADLSWSYIFGTIEDNKDTLNL-TDYS 1798

Query: 593  LSQTSLE 599
            +SQTSLE
Sbjct: 1799 VSQTSLE 1805

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|427794409|gb|JAA62656.1| Putative lipid exporter abca1, partial [Rhipicephalus pulchellus]

 Score =  248 bits (633), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 130/252 (51%), Positives = 170/252 (67%), Gaps = 10/252 (3%)

Query: 353 NSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVN 412
           N+F  GY +   +  A Q   IGYCPQFDAL+  LT  EHLEFY+R+R +P   +  + +
Sbjct: 426 NAFISGYSIRTQIDLARQN--IGYCPQFDALDPLLTGWEHLEFYARLRGIPEKYVQKVAD 483

Query: 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTC 472
             + K  L  Y+ R   T SGGNKRKL+TAIAL+G+ PL+FLDEPT+GMDP ARRFLW C
Sbjct: 484 WGIRKLGLHRYAHRCAGTYSGGNKRKLNTAIALVGDPPLVFLDEPTTGMDPKARRFLWDC 543

Query: 473 IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCA 532
           I   V +GR VILTSH+MEECEALC++L IMVNGQF CLGS  HLK+KYG GY+V ++  
Sbjct: 544 ILDVVRDGRSVILTSHSMEECEALCSRLAIMVNGQFRCLGSIQHLKNKYGSGYTVTLKVG 603

Query: 533 EGRSADAQTYLSL-----NLPVADLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGL 587
            G S++     SL         A L E H  Q++Y+IS +V  L  LF+ LE+A+ E+  
Sbjct: 604 -GTSSELSHVASLMENSFGPADAQLREQHLNQMEYQISPSVP-LAVLFQRLEAAR-ESSA 660

Query: 588 IVDYSLSQTSLE 599
           + DYS++QT+L+
Sbjct: 661 LDDYSVTQTTLD 672

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427784385|gb|JAA57644.1| Putative lipid exporter abca1 [Rhipicephalus pulchellus]

 Score =  248 bits (632), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 130/252 (51%), Positives = 170/252 (67%), Gaps = 10/252 (3%)

Query: 353  NSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVN 412
            N+F  GY +   +  A Q   IGYCPQFDAL+  LT  EHLEFY+R+R +P   +  + +
Sbjct: 2013 NAFISGYSIRTQIDLARQN--IGYCPQFDALDPLLTGWEHLEFYARLRGIPEKYVQKVAD 2070

Query: 413  ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTC 472
              + K  L  Y+ R   T SGGNKRKL+TAIAL+G+ PL+FLDEPT+GMDP ARRFLW C
Sbjct: 2071 WGIRKLGLHRYAHRCAGTYSGGNKRKLNTAIALVGDPPLVFLDEPTTGMDPKARRFLWDC 2130

Query: 473  IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCA 532
            I   V +GR VILTSH+MEECEALC++L IMVNGQF CLGS  HLK+KYG GY+V ++  
Sbjct: 2131 ILDVVRDGRSVILTSHSMEECEALCSRLAIMVNGQFRCLGSIQHLKNKYGSGYTVTLKVG 2190

Query: 533  EGRSADAQTYLSL-----NLPVADLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGL 587
             G S++     SL         A L E H  Q++Y+IS +V  L  LF+ LE+A+ E+  
Sbjct: 2191 -GTSSELSHVASLMENSFGPADAQLREQHLNQMEYQISPSVP-LAVLFQRLEAAR-ESSA 2247

Query: 588  IVDYSLSQTSLE 599
            + DYS++QT+L+
Sbjct: 2248 LDDYSVTQTTLD 2259

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390344366|ref|XP_003726106.1| PREDICTED: ATP-binding cassette sub-family A member 1-like [Strongylocentrotus purpuratus]

 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 117/228 (51%), Positives = 160/228 (70%), Gaps = 3/228 (1%)

Query: 374  IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
            +GYCPQFDAL++ +T +EHLEFY+RVR +    +  + +  + K  L  Y DR   T SG
Sbjct: 2327 MGYCPQFDALDELMTGQEHLEFYARVRGVMEEEVPKVADWGIRKLGLTEYRDRSAGTYSG 2386

Query: 434  GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 493
            GNKRKLSTAIAL+GN P+IFLDEPT+GMDP +RRFLW CI   V EGR V+LTSH+MEEC
Sbjct: 2387 GNKRKLSTAIALIGNPPVIFLDEPTTGMDPKSRRFLWNCITSIVKEGRSVVLTSHSMEEC 2446

Query: 494  EALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAE--GRSADAQTYLSLNLPVAD 551
            EALCT+L IMVNG+F CLGS  HLK+K+G GY++ +R      ++A    ++ +  P A+
Sbjct: 2447 EALCTRLAIMVNGKFKCLGSTQHLKNKFGDGYTLTIRLGGEVPQTAALIDFMEVEFPSAN 2506

Query: 552  LVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLE 599
            L E H   L++++S + + L  +F+ LE  ++    I DYS+SQT+L+
Sbjct: 2507 LREQHFNMLEFQLSSSDTILSKVFQYLEDKRSRFN-IEDYSVSQTTLD 2553

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|260810768|ref|XP_002600120.1| hypothetical protein BRAFLDRAFT_118238 [Branchiostoma floridae] gi|229285406|gb|EEN56132.1| hypothetical protein BRAFLDRAFT_118238 [Branchiostoma floridae]

 Score =  245 bits (626), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 128/262 (48%), Positives = 164/262 (62%), Gaps = 9/262 (3%)

Query: 340 GKLQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRV 399
           G++   G   FL      G+ +  D+    Q   IGYCPQFDAL D LT R HL  Y+R+
Sbjct: 394 GEIAVTGGEAFLN-----GHSILKDIIKVHQS--IGYCPQFDALLDELTARGHLTMYARL 446

Query: 400 RNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTS 459
           R +P    + +VN +L K AL  Y+D+   TLSGGNKRKLSTAIAL+G  PLIFLDEPT+
Sbjct: 447 RGIPWSETDQVVNWALRKLALMPYADKPAGTLSGGNKRKLSTAIALIGFPPLIFLDEPTT 506

Query: 460 GMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 519
           GMDP ARRFLW  I+  +  GR VILTSH+MEECEALCT+L IMVNG+F CLGS  HLK+
Sbjct: 507 GMDPAARRFLWDLIKSIIQTGRSVILTSHSMEECEALCTRLAIMVNGRFKCLGSIQHLKN 566

Query: 520 KYGQGYSVKVRCAEGRSADAQT-YLSLNLPVADLVETHATQLQYRISGAVSDLGALFRTL 578
           ++G GY + VR   G        + +   P A + E H   +QY +  A   L  +F  +
Sbjct: 567 RFGDGYMITVRVKPGAEVKQVVRFFNRTFPEAVMKERHHNMVQYELKSADLSLSFIFSKM 626

Query: 579 ESAKTEAGLIVDYSLSQTSLED 600
           E  + E   I DYS+SQT+L++
Sbjct: 627 EEVQ-ETLRIEDYSVSQTTLDN 647

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	601
ZFIN|ZDB-GENE-031006-12	2268	abca1a "ATP-binding cassette,	0.374	0.099	0.5	3.5e-112
ZFIN|ZDB-GENE-030131-9826	2282	abca1b "ATP-binding cassette,	0.415	0.109	0.472	8.4e-111
UNIPROTKB|O95477	2261	ABCA1 "ATP-binding cassette su	0.372	0.099	0.493	8.3e-109
UNIPROTKB|F1MG24	2261	ABCA1 "Uncharacterized protein	0.372	0.099	0.489	1.1e-108
RGD|631344	2201	Abca1 "ATP-binding cassette, s	0.372	0.101	0.497	1.9e-108
MGI|MGI:99607	2261	Abca1 "ATP-binding cassette, s	0.372	0.099	0.493	5.7e-108
UNIPROTKB|E2QUX2	2262	ABCA1 "Uncharacterized protein	0.372	0.099	0.497	7.3e-108
UNIPROTKB|F1LNL3	2258	Abca1 "Protein Abca1" [Rattus	0.372	0.099	0.497	8.1e-107
UNIPROTKB|F1LRX9	2258	Abca1 "Protein Abca1" [Rattus	0.372	0.099	0.497	8.1e-107
ZFIN|ZDB-GENE-050517-4	2350	abca4b "ATP-binding cassette,	0.394	0.100	0.467	1.1e-106

ZFIN|ZDB-GENE-031006-12 abca1a "ATP-binding cassette, sub-family A (ABC1), member 1A" [Danio rerio (taxid:7955)]

 Score = 594 (214.2 bits), Expect = 3.5e-112, Sum P(3) = 3.5e-112
 Identities = 114/228 (50%), Positives = 155/228 (67%)

Query:   374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
             +GYCPQFDA+ND LT REHLEFY+ +R +P   +  + +  + K  L  Y D+   + SG
Sbjct:  1995 MGYCPQFDAINDLLTGREHLEFYAILRGVPEKEVCKVADWGIRKLGLMKYVDKAAGSYSG 2054

Query:   434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 493
             GN RKLSTA+AL+G  P++FLDEPT+GMDP ARR LW CI   + EGR V+LTSH+MEEC
Sbjct:  2055 GNMRKLSTAMALIGGPPVVFLDEPTTGMDPKARRALWNCILSIIKEGRSVVLTSHSMEEC 2114

Query:   494 EALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCA--EGRSADAQTYLSLNLPVAD 551
             EALCT++ IMVNG+F CLGS  HLK+K+G GY++ +R A  + R      ++   LP + 
Sbjct:  2115 EALCTRMAIMVNGRFRCLGSVQHLKNKFGDGYTIILRVAGADPRLEPVMEFIERELPGST 2174

Query:   552 LVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLE 599
             L E H   LQY++S +++ L  +F  L   K +   I DYS+SQT+L+
Sbjct:  2175 LKEKHRNMLQYQLSSSLTSLARIFNILSKNKEQLH-IEDYSVSQTTLD 2221

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-030131-9826 abca1b "ATP-binding cassette, sub-family A (ABC1), member 1B" [Danio rerio (taxid:7955)]

 Score = 592 (213.5 bits), Expect = 8.4e-111, Sum P(3) = 8.4e-111
 Identities = 122/258 (47%), Positives = 165/258 (63%)

Query:   346 GSSVFLKN-SFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPS 404
             G SV  K  +F  G  +  ++    Q   +GYCPQFDA+ND LT REHLEFY+ +R +P 
Sbjct:  1981 GDSVVTKGEAFIAGKSILREIDEVHQN--MGYCPQFDAINDLLTGREHLEFYAILRGVPE 2038

Query:   405 VLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG 464
               +  +    + K  L  Y D+   + SGGN RKLSTAI+L+G  P++FLDEPT+GMDP 
Sbjct:  2039 NEVCAVAEWGIRKLGLVKYVDKNAGSYSGGNMRKLSTAISLIGAPPVVFLDEPTTGMDPK 2098

Query:   465 ARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQG 524
             ARR LW CI   + EGR V+LTSH+MEECEALCT++ IMVNG+F CLGS  HLK+++G G
Sbjct:  2099 ARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDG 2158

Query:   525 YSVKVRCAEGRSADAQT---YLSLNLPVADLVETHATQLQYRISGAVSDLGALFRTLESA 581
             Y++ +R A G   D Q    ++   LP + L E H   LQY++  +++ L  +F  L   
Sbjct:  2159 YTIILRVA-GPDPDLQPVMKFIESELPGSTLKEKHRNMLQYQLPSSLTSLAHIFSILAKN 2217

Query:   582 KTEAGLIVDYSLSQTSLE 599
             K E   I DYS+SQT+L+
Sbjct:  2218 K-EFLRIEDYSVSQTTLD 2234

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|O95477 ABCA1 "ATP-binding cassette sub-family A member 1" [Homo sapiens (taxid:9606)]

 Score = 584 (210.6 bits), Expect = 8.3e-109, Sum P(3) = 8.3e-109
 Identities = 113/229 (49%), Positives = 154/229 (67%)

Query:   374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
             +GYCPQFDA+ + LT REH+EF++ +R +P   +  +   ++ K  L  Y ++     SG
Sbjct:  1988 MGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEKYAGNYSG 2047

Query:   434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 493
             GNKRKLSTA+AL+G  P++FLDEPT+GMDP ARRFLW C    V EGR V+LTSH+MEEC
Sbjct:  2048 GNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSVVKEGRSVVLTSHSMEEC 2107

Query:   494 EALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSAD---AQTYLSLNLPVA 550
             EALCT++ IMVNG+F CLGS  HLK+++G GY++ VR A G + D    Q +  L  P +
Sbjct:  2108 EALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIA-GSNPDLKPVQDFFGLAFPGS 2166

Query:   551 DLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLE 599
              L E H   LQY++  ++S L  +F  L  +K     I DYS+SQT+L+
Sbjct:  2167 VLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLH-IEDYSVSQTTLD 2214

GO:0016887 "ATPase activity" evidence=IEA

GO:0002790 "peptide secretion" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006497 "protein lipidation" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0045332 "phospholipid translocation" evidence=IEA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0071300 "cellular response to retinoic acid" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0006629 "lipid metabolic process" evidence=TAS

GO:0042157 "lipoprotein metabolic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010745 "negative regulation of macrophage derived foam cell differentiation" evidence=TAS

GO:0010887 "negative regulation of cholesterol storage" evidence=TAS

GO:0034188 "apolipoprotein A-I receptor activity" evidence=IDA

GO:0042632 "cholesterol homeostasis" evidence=IDA

GO:0008203 "cholesterol metabolic process" evidence=IDA

GO:0033700 "phospholipid efflux" evidence=IDA;IMP

GO:0055091 "phospholipid homeostasis" evidence=IMP

GO:0015485 "cholesterol binding" evidence=IC

GO:0005548 "phospholipid transporter activity" evidence=IDA

GO:0005543 "phospholipid binding" evidence=IC

GO:0043691 "reverse cholesterol transport" evidence=IMP

GO:0019905 "syntaxin binding" evidence=IPI

GO:0045121 "membrane raft" evidence=IDA

GO:0008509 "anion transmembrane transporter activity" evidence=ISS

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=IMP

GO:0005524 "ATP binding" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0016197 "endosomal transport" evidence=IDA

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0007040 "lysosome organization" evidence=IDA

GO:0032367 "intracellular cholesterol transport" evidence=IMP

GO:0033344 "cholesterol efflux" evidence=IMP;IDA

GO:0017127 "cholesterol transporter activity" evidence=IDA

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0060155 "platelet dense granule organization" evidence=IMP

GO:0050702 "interleukin-1 beta secretion" evidence=IMP

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IMP

GO:0032489 "regulation of Cdc42 protein signal transduction" evidence=IMP

GO:0034186 "apolipoprotein A-I binding" evidence=IPI

GO:0031267 "small GTPase binding" evidence=IPI

GO:0034185 "apolipoprotein binding" evidence=IPI

GO:0055098 "response to low-density lipoprotein particle stimulus" evidence=IEP

GO:0034616 "response to laminar fluid shear stress" evidence=IEP

GO:0034380 "high-density lipoprotein particle assembly" evidence=IMP

GO:0038027 "apolipoprotein A-I-mediated signaling pathway" evidence=IDA

UNIPROTKB|F1MG24 ABCA1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 582 (209.9 bits), Expect = 1.1e-108, Sum P(3) = 1.1e-108
 Identities = 112/229 (48%), Positives = 154/229 (67%)

Query:   374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
             +GYCPQFDA+ + LT REH+EF++ +R +P   +  +   ++ K  L  Y ++     SG
Sbjct:  1988 MGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEKYAGNYSG 2047

Query:   434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 493
             GNKRKLSTA+AL+G  P++FLDEPT+GMDP ARRFLW C    + EGR V+LTSH+MEEC
Sbjct:  2048 GNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIIKEGRSVVLTSHSMEEC 2107

Query:   494 EALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSAD---AQTYLSLNLPVA 550
             EALCT++ IMVNG+F CLGS  HLK+++G GY++ VR A G + D    Q +  L  P +
Sbjct:  2108 EALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIA-GSNPDLKPVQEFFELAFPGS 2166

Query:   551 DLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLE 599
              L E H   LQY++  ++S L  +F  L  +K     I DYS+SQT+L+
Sbjct:  2167 VLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLH-IEDYSVSQTTLD 2214

GO:0071300 "cellular response to retinoic acid" evidence=IEA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0060155 "platelet dense granule organization" evidence=IEA

GO:0055098 "response to low-density lipoprotein particle stimulus" evidence=IEA

GO:0055091 "phospholipid homeostasis" evidence=IEA

GO:0050702 "interleukin-1 beta secretion" evidence=IEA

GO:0045335 "phagocytic vesicle" evidence=IEA

GO:0045332 "phospholipid translocation" evidence=IEA

GO:0045121 "membrane raft" evidence=IEA

GO:0043691 "reverse cholesterol transport" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IEA

GO:0034616 "response to laminar fluid shear stress" evidence=IEA

GO:0034380 "high-density lipoprotein particle assembly" evidence=IEA

GO:0034188 "apolipoprotein A-I receptor activity" evidence=IEA

GO:0034186 "apolipoprotein A-I binding" evidence=IEA

GO:0033700 "phospholipid efflux" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IEA

GO:0032489 "regulation of Cdc42 protein signal transduction" evidence=IEA

GO:0032367 "intracellular cholesterol transport" evidence=IEA

GO:0031267 "small GTPase binding" evidence=IEA

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=IEA

GO:0016197 "endosomal transport" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0008509 "anion transmembrane transporter activity" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007040 "lysosome organization" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IEA

GO:0006497 "protein lipidation" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005548 "phospholipid transporter activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0002790 "peptide secretion" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

RGD|631344 Abca1 "ATP-binding cassette, subfamily A (ABC1), member 1" [Rattus norvegicus (taxid:10116)]

 Score = 589 (212.4 bits), Expect = 1.9e-108, Sum P(3) = 1.9e-108
 Identities = 114/229 (49%), Positives = 154/229 (67%)

Query:   374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
             +GYCPQFDA+ + LT REHLEF++ +R +P   +  +   ++ K  L  Y ++     SG
Sbjct:  1928 MGYCPQFDAITELLTGREHLEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEKYASNYSG 1987

Query:   434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 493
             GNKRKLSTAIAL+G  P++FLDEPT+GMDP ARRFLW C    + EGR V+LTSH+MEEC
Sbjct:  1988 GNKRKLSTAIALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIIKEGRSVVLTSHSMEEC 2047

Query:   494 EALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSAD---AQTYLSLNLPVA 550
             EALCT++ IMVNG+F CLGS  HLK+++G GY++ VR A G + D    Q +  L  P +
Sbjct:  2048 EALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIA-GSNPDLKPVQEFFGLAFPGS 2106

Query:   551 DLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLE 599
              L E H   LQY++  ++S L  +F  L  +K     I DYS+SQT+L+
Sbjct:  2107 VLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLH-IEDYSVSQTTLD 2154

GO:0002790 "peptide secretion" evidence=ISO

GO:0005524 "ATP binding" evidence=ISO

GO:0005548 "phospholipid transporter activity" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0005887 "integral to plasma membrane" evidence=ISO

GO:0006497 "protein lipidation" evidence=ISO

GO:0006911 "phagocytosis, engulfment" evidence=ISO

GO:0007040 "lysosome organization" evidence=ISO

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO

GO:0007584 "response to nutrient" evidence=IEP

GO:0008203 "cholesterol metabolic process" evidence=ISO

GO:0008509 "anion transmembrane transporter activity" evidence=ISO

GO:0009986 "cell surface" evidence=IDA

GO:0010875 "positive regulation of cholesterol efflux" evidence=ISO

GO:0015914 "phospholipid transport" evidence=IDA;TAS

GO:0016197 "endosomal transport" evidence=ISO

GO:0017127 "cholesterol transporter activity" evidence=ISO

GO:0019905 "syntaxin binding" evidence=ISO

GO:0030139 "endocytic vesicle" evidence=ISO

GO:0030301 "cholesterol transport" evidence=IMP;IDA

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=ISO

GO:0031267 "small GTPase binding" evidence=ISO

GO:0032367 "intracellular cholesterol transport" evidence=ISO

GO:0032489 "regulation of Cdc42 protein signal transduction" evidence=ISO

GO:0033344 "cholesterol efflux" evidence=ISO

GO:0033700 "phospholipid efflux" evidence=ISO

GO:0034185 "apolipoprotein binding" evidence=ISO

GO:0034186 "apolipoprotein A-I binding" evidence=ISO

GO:0034188 "apolipoprotein A-I receptor activity" evidence=ISO

GO:0034380 "high-density lipoprotein particle assembly" evidence=ISO

GO:0034616 "response to laminar fluid shear stress" evidence=ISO

GO:0038027 "apolipoprotein A-I-mediated signaling pathway" evidence=ISO

GO:0042157 "lipoprotein metabolic process" evidence=ISO

GO:0042158 "lipoprotein biosynthetic process" evidence=ISO;IMP

GO:0042493 "response to drug" evidence=IEP

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IDA;TAS

GO:0042632 "cholesterol homeostasis" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0043691 "reverse cholesterol transport" evidence=ISO

GO:0045121 "membrane raft" evidence=ISO

GO:0045332 "phospholipid translocation" evidence=ISO

GO:0045335 "phagocytic vesicle" evidence=ISO

GO:0050702 "interleukin-1 beta secretion" evidence=ISO

GO:0055091 "phospholipid homeostasis" evidence=ISO

GO:0055098 "response to low-density lipoprotein particle stimulus" evidence=ISO

GO:0060155 "platelet dense granule organization" evidence=ISO

GO:0071222 "cellular response to lipopolysaccharide" evidence=ISO

GO:0071300 "cellular response to retinoic acid" evidence=ISO

GO:0071397 "cellular response to cholesterol" evidence=IEP

GO:0034364 "high-density lipoprotein particle" evidence=IDA

GO:0055099 "response to high density lipoprotein particle stimulus" evidence=ISO

MGI|MGI:99607 Abca1 "ATP-binding cassette, sub-family A (ABC1), member 1" [Mus musculus (taxid:10090)]

 Score = 584 (210.6 bits), Expect = 5.7e-108, Sum P(3) = 5.7e-108
 Identities = 113/229 (49%), Positives = 154/229 (67%)

Query:   374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
             +GYCPQFDA+ + LT REH+EF++ +R +P   +  +   ++ K  L  Y ++     SG
Sbjct:  1988 MGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEKYASNYSG 2047

Query:   434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 493
             GNKRKLSTA+AL+G  P++FLDEPT+GMDP ARRFLW C    V EGR V+LTSH+MEEC
Sbjct:  2048 GNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIVKEGRSVVLTSHSMEEC 2107

Query:   494 EALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSAD---AQTYLSLNLPVA 550
             EALCT++ IMVNG+F CLGS  HLK+++G GY++ VR A G + D    Q +  L  P +
Sbjct:  2108 EALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIA-GSNPDLKPVQEFFGLAFPGS 2166

Query:   551 DLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLE 599
              L E H   LQY++  ++S L  +F  L  +K     I DYS+SQT+L+
Sbjct:  2167 VLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLH-IEDYSVSQTTLD 2214

GO:0000166 "nucleotide binding" evidence=IEA

GO:0002790 "peptide secretion" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=ISO

GO:0005548 "phospholipid transporter activity" evidence=ISO;IMP;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISO;IDA

GO:0006497 "protein lipidation" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0007040 "lysosome organization" evidence=ISO

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO

GO:0008203 "cholesterol metabolic process" evidence=ISO;IDA

GO:0008509 "anion transmembrane transporter activity" evidence=IDA

GO:0009986 "cell surface" evidence=ISO

GO:0010875 "positive regulation of cholesterol efflux" evidence=IMP

GO:0015914 "phospholipid transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016197 "endosomal transport" evidence=ISO

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=ISO;IMP;IDA

GO:0019905 "syntaxin binding" evidence=ISO

GO:0030139 "endocytic vesicle" evidence=ISO

GO:0030301 "cholesterol transport" evidence=ISO

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=ISO

GO:0031267 "small GTPase binding" evidence=ISO

GO:0032367 "intracellular cholesterol transport" evidence=ISO

GO:0032489 "regulation of Cdc42 protein signal transduction" evidence=ISO

GO:0033344 "cholesterol efflux" evidence=ISO;IDA;IMP

GO:0033700 "phospholipid efflux" evidence=ISO;IMP;IDA

GO:0034185 "apolipoprotein binding" evidence=ISO

GO:0034186 "apolipoprotein A-I binding" evidence=ISO

GO:0034188 "apolipoprotein A-I receptor activity" evidence=ISO

GO:0034364 "high-density lipoprotein particle" evidence=ISO

GO:0034380 "high-density lipoprotein particle assembly" evidence=ISO

GO:0038027 "apolipoprotein A-I-mediated signaling pathway" evidence=ISO

GO:0042157 "lipoprotein metabolic process" evidence=IMP

GO:0042158 "lipoprotein biosynthetic process" evidence=ISO;IMP

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISO

GO:0042632 "cholesterol homeostasis" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0043691 "reverse cholesterol transport" evidence=ISO;IMP

GO:0045121 "membrane raft" evidence=ISO

GO:0045332 "phospholipid translocation" evidence=IMP

GO:0045335 "phagocytic vesicle" evidence=ISO

GO:0050702 "interleukin-1 beta secretion" evidence=ISO

GO:0055091 "phospholipid homeostasis" evidence=ISO

GO:0055099 "response to high density lipoprotein particle stimulus" evidence=IMP

GO:0060155 "platelet dense granule organization" evidence=ISO

GO:0071222 "cellular response to lipopolysaccharide" evidence=IDA

GO:0071300 "cellular response to retinoic acid" evidence=IDA

UNIPROTKB|E2QUX2 ABCA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 586 (211.3 bits), Expect = 7.3e-108, Sum P(3) = 7.3e-108
 Identities = 114/229 (49%), Positives = 154/229 (67%)

Query:   374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
             +GYCPQFDA+ + LT REH+EF++ +R +P   +  +   ++ K  L  Y ++     SG
Sbjct:  1989 MGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEKYAGNYSG 2048

Query:   434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 493
             GNKRKLSTA+AL+G  P++FLDEPT+GMDP ARRFLW C    V EGR V+LTSH+MEEC
Sbjct:  2049 GNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIVKEGRSVVLTSHSMEEC 2108

Query:   494 EALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSAD---AQTYLSLNLPVA 550
             EALCT++ IMVNG+F CLGS  HLK+++G GY++ VR A G S D    Q +  L  P +
Sbjct:  2109 EALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIA-GSSPDLKPVQEFFGLAFPGS 2167

Query:   551 DLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLE 599
              L E H   LQY++  ++S L  +F  L  +K     I DYS+SQT+L+
Sbjct:  2168 VLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLH-IEDYSVSQTTLD 2215

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|F1LNL3 Abca1 "Protein Abca1" [Rattus norvegicus (taxid:10116)]

 Score = 589 (212.4 bits), Expect = 8.1e-107, Sum P(3) = 8.1e-107
 Identities = 114/229 (49%), Positives = 154/229 (67%)

Query:   374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
             +GYCPQFDA+ + LT REHLEF++ +R +P   +  +   ++ K  L  Y ++     SG
Sbjct:  1985 MGYCPQFDAITELLTGREHLEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEKYASNYSG 2044

Query:   434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 493
             GNKRKLSTAIAL+G  P++FLDEPT+GMDP ARRFLW C    + EGR V+LTSH+MEEC
Sbjct:  2045 GNKRKLSTAIALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIIKEGRSVVLTSHSMEEC 2104

Query:   494 EALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSAD---AQTYLSLNLPVA 550
             EALCT++ IMVNG+F CLGS  HLK+++G GY++ VR A G + D    Q +  L  P +
Sbjct:  2105 EALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIA-GSNPDLKPVQEFFGLAFPGS 2163

Query:   551 DLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLE 599
              L E H   LQY++  ++S L  +F  L  +K     I DYS+SQT+L+
Sbjct:  2164 VLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLH-IEDYSVSQTTLD 2211

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|F1LRX9 Abca1 "Protein Abca1" [Rattus norvegicus (taxid:10116)]

 Score = 589 (212.4 bits), Expect = 8.1e-107, Sum P(3) = 8.1e-107
 Identities = 114/229 (49%), Positives = 154/229 (67%)

Query:   374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
             +GYCPQFDA+ + LT REHLEF++ +R +P   +  +   ++ K  L  Y ++     SG
Sbjct:  1985 MGYCPQFDAITELLTGREHLEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEKYASNYSG 2044

Query:   434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 493
             GNKRKLSTAIAL+G  P++FLDEPT+GMDP ARRFLW C    + EGR V+LTSH+MEEC
Sbjct:  2045 GNKRKLSTAIALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIIKEGRSVVLTSHSMEEC 2104

Query:   494 EALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSAD---AQTYLSLNLPVA 550
             EALCT++ IMVNG+F CLGS  HLK+++G GY++ VR A G + D    Q +  L  P +
Sbjct:  2105 EALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIA-GSNPDLKPVQEFFGLAFPGS 2163

Query:   551 DLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLE 599
              L E H   LQY++  ++S L  +F  L  +K     I DYS+SQT+L+
Sbjct:  2164 VLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLH-IEDYSVSQTTLD 2211

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

ZFIN|ZDB-GENE-050517-4 abca4b "ATP-binding cassette, sub-family A (ABC1), member 4b" [Danio rerio (taxid:7955)]

 Score = 548 (198.0 bits), Expect = 1.1e-106, Sum P(3) = 1.1e-106
 Identities = 116/248 (46%), Positives = 159/248 (64%)

Query:   358 GYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNK 417
             GY +  ++    Q   +GYCPQFDA+++ LT REHL  Y+R+R +P   ++ +    + K
Sbjct:  2065 GYSILSNILDVHQN--MGYCPQFDAIDELLTGREHLYLYARLRGIPESEISRVAEWGIQK 2122

Query:   418 FALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAV 477
               L  Y+     T SGGNKRKLSTAIA++G  PL+ LDEPT+GMDP +RRFLWT I   +
Sbjct:  2123 LGLSEYAGNCAGTYSGGNKRKLSTAIAMIGCPPLVLLDEPTTGMDPHSRRFLWTAILSII 2182

Query:   478 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSV--KVRCAE-G 534
              +GR V+LTSH+MEECEALCT+L IMVNG F CLG+  HLK K+G GY V  K++ A+ G
Sbjct:  2183 RDGRAVVLTSHSMEECEALCTRLAIMVNGTFKCLGTIQHLKYKFGGGYVVTMKIKAAKPG 2242

Query:   535 RSAD---AQTYLSLNLPVADLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDY 591
              S D   A++++  + P     E H   LQY I+ A   L  +F+ + + K     I DY
Sbjct:  2243 LSPDLVPAESFMDSSFPGCIQREKHYNTLQYEIAAA--SLARVFQLVLTNKERLN-IEDY 2299

Query:   592 SLSQTSLE 599
             S+SQT+L+
Sbjct:  2300 SVSQTTLD 2307

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	601
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	7e-69
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	8e-64
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	2e-44
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	1e-34
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	2e-34
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	4e-32
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	1e-31
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	9e-31
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	4e-29
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	3e-26
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	2e-25
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	4e-25
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	6e-25
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	3e-24
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	5e-24
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	6e-24
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	5e-23
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	7e-23
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	1e-22
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	2e-21
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	2e-21
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	4e-20
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	5e-20
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	3e-19
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	5e-19
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	5e-19
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	3e-17
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	8e-17
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	8e-17
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	2e-16
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	2e-16
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	1e-15
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	2e-15
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	2e-15
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	3e-15
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	4e-15
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	9e-15
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	1e-14
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	1e-14
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	1e-14
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	2e-14
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	4e-14
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	4e-14
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	5e-14
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	5e-14
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	7e-14
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	2e-13
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	2e-13
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	7e-13
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	1e-12
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	2e-12
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	2e-12
pfam00005	119	pfam00005, ABC_tran, ABC transporter	2e-12
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	3e-12
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	3e-12
COG4133	209	COG4133, CcmA, ABC-type transport system involved	4e-12
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	7e-12
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	1e-11
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	1e-11
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	1e-11
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	1e-11
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	2e-11
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	2e-11
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	2e-11
pfam00005	119	pfam00005, ABC_tran, ABC transporter	2e-11
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	2e-11
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	2e-11
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	2e-11
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	2e-11
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	3e-11
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	3e-11
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	3e-11
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	4e-11
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	4e-11
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	6e-11
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	7e-11
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	8e-11
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	9e-11
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	9e-11
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	1e-10
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	1e-10
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	2e-10
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	2e-10
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	2e-10
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	3e-10
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	3e-10
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	4e-10
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	4e-10
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	5e-10
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	5e-10
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	9e-10
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	1e-09
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	1e-09
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	1e-09
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	1e-09
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	2e-09
COG4987	573	COG4987, CydC, ABC-type transport system involved	2e-09
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	2e-09
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-09
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	3e-09
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	3e-09
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	3e-09
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	3e-09
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	3e-09
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	5e-09
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	6e-09
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	7e-09
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	8e-09
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	9e-09
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	1e-08
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	1e-08
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	1e-08
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	2e-08
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	2e-08
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	2e-08
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	3e-08
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	3e-08
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	3e-08
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	3e-08
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	3e-08
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	3e-08
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	3e-08
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	3e-08
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	4e-08
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	4e-08
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	4e-08
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	5e-08
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	5e-08
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	5e-08
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	6e-08
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	6e-08
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	7e-08
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	8e-08
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	8e-08
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	9e-08
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	1e-07
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	1e-07
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	1e-07
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	1e-07
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	1e-07
COG1123	539	COG1123, COG1123, ATPase components of various ABC	1e-07
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	1e-07
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	1e-07
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	1e-07
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	1e-07
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	2e-07
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	2e-07
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	2e-07
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	2e-07
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	2e-07
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	2e-07
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	2e-07
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	2e-07
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	2e-07
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	2e-07
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	2e-07
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	2e-07
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	2e-07
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	2e-07
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	3e-07
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	3e-07
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	3e-07
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	3e-07
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	3e-07
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	3e-07
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	3e-07
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	3e-07
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	3e-07
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	3e-07
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	3e-07
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	4e-07
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	4e-07
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	4e-07
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	5e-07
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	6e-07
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	6e-07
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	6e-07
pfam13304	256	pfam13304, AAA_21, AAA domain	6e-07
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	6e-07
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	7e-07
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	7e-07
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	7e-07
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	8e-07
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	8e-07
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	8e-07
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	9e-07
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	9e-07
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	9e-07
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	1e-06
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	1e-06
cd03238	176	cd03238, ABC_UvrA, ATP-binding cassette domain of	1e-06
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	1e-06
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	1e-06
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	1e-06
COG4988	559	COG4988, CydD, ABC-type transport system involved	1e-06
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	1e-06
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	1e-06
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	2e-06
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	2e-06
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	2e-06
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	2e-06
cd03227	162	cd03227, ABC_Class2, ATP-binding cassette domain o	2e-06
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	2e-06
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	2e-06
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	2e-06
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	2e-06
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	2e-06
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	2e-06
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	2e-06
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	2e-06
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	3e-06
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	3e-06
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	3e-06
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	4e-06
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	4e-06
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	4e-06
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	4e-06
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	4e-06
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	5e-06
cd03227	162	cd03227, ABC_Class2, ATP-binding cassette domain o	5e-06
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	5e-06
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	5e-06
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	6e-06
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	6e-06
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	6e-06
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	6e-06
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	7e-06
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	7e-06
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	7e-06
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	8e-06
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	8e-06
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	8e-06
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	9e-06
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	9e-06
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	9e-06
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	9e-06
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	9e-06
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	1e-05
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	1e-05
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	1e-05
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	1e-05
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	1e-05
COG1123	539	COG1123, COG1123, ATPase components of various ABC	1e-05
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	1e-05
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	1e-05
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	1e-05
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	1e-05
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	1e-05
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	1e-05
cd03240	204	cd03240, ABC_Rad50, ATP-binding cassette domain of	1e-05
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	1e-05
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	1e-05
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	2e-05
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	2e-05
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	2e-05
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	2e-05
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	2e-05
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	2e-05
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	2e-05
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	2e-05
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	2e-05
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	3e-05
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	3e-05
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	3e-05
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	3e-05
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	3e-05
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	3e-05
PRK13540	200	PRK13540, PRK13540, cytochrome c biogenesis protei	3e-05
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	3e-05
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	3e-05
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	3e-05
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	3e-05
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	4e-05
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	4e-05
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	4e-05
pfam13304	256	pfam13304, AAA_21, AAA domain	4e-05
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	4e-05
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	4e-05
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	4e-05
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	5e-05
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	5e-05
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	5e-05
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	6e-05
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	6e-05
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	6e-05
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	6e-05
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	6e-05
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	7e-05
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	7e-05
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	7e-05
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	8e-05
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	8e-05
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	8e-05
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	8e-05
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	8e-05
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	9e-05
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	1e-04
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	1e-04
COG4987	573	COG4987, CydC, ABC-type transport system involved	1e-04
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	1e-04
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	1e-04
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	1e-04
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	1e-04
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	1e-04
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	1e-04
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	1e-04
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	1e-04
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	1e-04
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	1e-04
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	1e-04
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	1e-04
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	1e-04
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	2e-04
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	2e-04
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	2e-04
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	2e-04
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	2e-04
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	2e-04
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	2e-04
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	2e-04
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	2e-04
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	2e-04
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	2e-04
COG4598	256	COG4598, HisP, ABC-type histidine transport system	2e-04
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	2e-04
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	2e-04
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	2e-04
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	3e-04
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	3e-04
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	3e-04
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	3e-04
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	3e-04
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	3e-04
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	3e-04
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	3e-04
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	3e-04
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	3e-04
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	3e-04
PRK13545	549	PRK13545, tagH, teichoic acids export protein ATP-	3e-04
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	3e-04
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	3e-04
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	4e-04
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	4e-04
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	4e-04
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	5e-04
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	5e-04
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	5e-04
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	5e-04
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	5e-04
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	5e-04
PRK10418	254	PRK10418, nikD, nickel transporter ATP-binding pro	5e-04
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	5e-04
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	6e-04
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	6e-04
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	6e-04
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	6e-04
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	6e-04
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	6e-04
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	6e-04
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	7e-04
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	7e-04
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	7e-04
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	7e-04
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	7e-04
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	7e-04
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	7e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	7e-04
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	7e-04
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	8e-04
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	8e-04
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	8e-04
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	8e-04
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	8e-04
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	9e-04
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	0.001
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	0.001
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	0.001
COG4988	559	COG4988, CydD, ABC-type transport system involved	0.001
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	0.001
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	0.001
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	0.001
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	0.001
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	0.001
PRK13541	195	PRK13541, PRK13541, cytochrome c biogenesis protei	0.001
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	0.001
cd03279	213	cd03279, ABC_sbcCD, ATP-binding cassette domain of	0.001
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	0.001
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	0.001
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	0.001
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	0.001
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	0.001
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	0.001
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	0.001
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	0.001
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	0.002
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	0.002
COG4133	209	COG4133, CcmA, ABC-type transport system involved	0.002
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	0.002
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	0.002
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	0.002
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	0.002
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	0.002
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	0.002
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	0.002
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	0.002
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	0.002
PRK13546	264	PRK13546, PRK13546, teichoic acids export protein	0.002
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	0.002
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	0.003
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	0.003
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	0.003
cd03271	261	cd03271, ABC_UvrA_II, ATP-binding cassette domain	0.003
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	0.003
TIGR00630	925	TIGR00630, uvra, excinuclease ABC, A subunit	0.003
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	0.003
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	0.004
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	0.004
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	0.004
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	0.004
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	0.004
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	0.004
COG4170	330	COG4170, SapD, ABC-type antimicrobial peptide tran	0.004
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	0.004
pfam13558	79	pfam13558, SbcCD_C, Putative exonuclease SbcCD, C	0.004

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score =  221 bits (567), Expect = 7e-69
 Identities = 80/162 (49%), Positives = 106/162 (65%), Gaps = 3/162 (1%)

Query: 357 RGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLN 416
            GY +  D K+A Q   +GYCPQFDAL D LT REHL FY+R++ LP   +   V   L 
Sbjct: 62  NGYSIRTDRKAARQ--SLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLR 119

Query: 417 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERA 476
              L   +++  RTLSGG KRKLS AIAL+G   ++ LDEPTSG+DP +RR +W  I   
Sbjct: 120 VLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILE- 178

Query: 477 VSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 518
           V +GR +ILT+H+M+E EALC ++ IM +G+  C+GS   LK
Sbjct: 179 VRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score =  227 bits (581), Expect = 8e-64
 Identities = 113/232 (48%), Positives = 151/232 (65%), Gaps = 9/232 (3%)

Query: 374  IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
            +GYCPQFDA++D LT REHL  Y+R+R +P+  +  + N S+    L  Y+DR   T SG
Sbjct: 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSG 2073

Query: 434  GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 493
            GNKRKLSTAIAL+G  PL+ LDEPT+GMDP ARR LW  I   + EGR V+LTSH+MEEC
Sbjct: 2074 GNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEEC 2133

Query: 494  EALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRS------ADAQTYLSLNL 547
            EALCT+L IMV G F CLG+  HLKSK+G GY V ++    +          + +   N 
Sbjct: 2134 EALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTMKIKSPKDDLLPDLNPVEQFFQGNF 2193

Query: 548  PVADLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLE 599
            P +   E H   LQ+++S   S L  +F+ L S K ++ LI +YS++QT+L+
Sbjct: 2194 PGSVQRERHYNMLQFQVSS--SSLARIFQLLISHK-DSLLIEEYSVTQTTLD 2242

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score =  159 bits (405), Expect = 2e-44
 Identities = 64/174 (36%), Positives = 102/174 (58%), Gaps = 3/174 (1%)

Query: 358 GYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNK 417
           GY +  +     ++  IGY PQ  +L   LT RE+LEF++R+  L        + E L  
Sbjct: 66  GYDVVKEPAKVRRR--IGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLEL 123

Query: 418 FALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAV 477
           F L   ++++VRTLSGG K++LS A+ALL +  L+ LDEPTSG+DP +RR +W  +    
Sbjct: 124 FGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELA 183

Query: 478 SEGRC-VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVR 530
            EG   ++L++H +EE E LC ++ I+ +G+    G+   LK K+G    +++ 
Sbjct: 184 KEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELE 237

Length = 293

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score =  130 bits (329), Expect = 1e-34
 Identities = 49/97 (50%), Positives = 65/97 (67%)

Query: 99  SMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV 158
            ML G L  +SGTA I  + IRTD    R+SLG CPQ++ALFD+LTV EH+ FY++LK +
Sbjct: 46  KMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGL 105

Query: 159 PKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
           PK   + E+  ++  LG+  K    A TLSGGM+RKL
Sbjct: 106 PKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKL 142

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score =  132 bits (333), Expect = 2e-34
 Identities = 77/256 (30%), Positives = 117/256 (45%), Gaps = 3/256 (1%)

Query: 348 SVFLKNSFARGYYLSLDMKSAPQK--SYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSV 405
           +  L+ +         D+   P+K    IG  PQ+ ++++ LT RE+LE   R+  LP  
Sbjct: 40  TTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKD 99

Query: 406 LLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGA 465
                  E L  F LG  +DR V T SGG +R+L  A +L+    ++FLDEPT+G+DP  
Sbjct: 100 EAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRT 159

Query: 466 RRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGY 525
           RR +W  I     EG  ++LT+H MEE + LC ++ I+ +G+    G+   LK + G+  
Sbjct: 160 RRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDT 219

Query: 526 SVKVRCAEGRSADAQTYLSLNLPVADLVETHATQLQYRISGAVSDLG-ALFRTLESAKTE 584
                          + L   L    L     T    RI   V D    +   +E+A   
Sbjct: 220 LESRPRDIQSLKVEVSMLIAELGETGLGLLAVTVDSDRIKILVPDGDETVPEIVEAAIRN 279

Query: 585 AGLIVDYSLSQTSLED 600
              I   S  + SL+D
Sbjct: 280 GIRIRSISTERPSLDD 295

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score =  123 bits (310), Expect = 4e-32
 Identities = 53/146 (36%), Positives = 84/146 (57%), Gaps = 1/146 (0%)

Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
           IG   Q  +++D LT  E+L  ++R+  +P       ++E L+   L   +DR V+T SG
Sbjct: 75  IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSG 134

Query: 434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE 492
           G +R+L  A +L+    ++FLDEPT G+DP  R  +W  IE+   E G  ++LT+H MEE
Sbjct: 135 GMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEE 194

Query: 493 CEALCTKLTIMVNGQFTCLGSATHLK 518
            E LC ++ I+ +G+    G+   LK
Sbjct: 195 AEQLCDRVAIIDHGRIIAEGTPEELK 220

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score =  120 bits (303), Expect = 1e-31
 Identities = 53/161 (32%), Positives = 77/161 (47%), Gaps = 38/161 (23%)

Query: 350 FLKNSFARGYYLSLDMKSAPQ--KSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLL 407
            LK        L  D+K  P+  K  IGY P+  +L + LT RE+L+             
Sbjct: 49  LLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK------------- 95

Query: 408 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARR 467
                                  LSGG K++L+ A ALL +  L+ LDEPTSG+DP +RR
Sbjct: 96  -----------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRR 132

Query: 468 FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF 508
             W  +     EG+ ++L+SH +EE E LC ++ I+ NG+ 
Sbjct: 133 EFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score =  128 bits (323), Expect = 9e-31
 Identities = 70/139 (50%), Positives = 89/139 (64%), Gaps = 25/139 (17%)

Query: 272  AMSFV-PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLL 330
            A++FV  A  V+LDEPTSGVDPYSRRSIW+LL+K        SGRT+I++TH+MDEADLL
Sbjct: 1073 AIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR------SGRTIIMSTHHMDEADLL 1126

Query: 331  GDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSL--DMK-------------SAPQKSYIG 375
            GDRIAII+ G+L C G+ +FLKN F  G+YL+L   MK             S   K +  
Sbjct: 1127 GDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVRKMKNIQSQRGGCEGTCSCTSKGFST 1186

Query: 376  YCPQFDALNDRLTPREHLE 394
             CP   A  D +TP + L+
Sbjct: 1187 RCP---ARVDEITPEQVLD 1202

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score =  114 bits (289), Expect = 4e-29
 Identities = 43/83 (51%), Positives = 60/83 (72%), Gaps = 7/83 (8%)

Query: 271 FAMSFVPASTVI-LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADL 329
            A++ +   +V+ LDEPTSG+DP SRR+IW+L+++V        GR++ILTTH MDEA+ 
Sbjct: 144 LAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEV------RKGRSIILTTHSMDEAEA 197

Query: 330 LGDRIAIIAAGKLQCCGSSVFLK 352
           L DRIAI++ GKL+C GS   LK
Sbjct: 198 LCDRIAIMSDGKLRCIGSPQELK 220

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score =  109 bits (273), Expect = 3e-26
 Identities = 62/180 (34%), Positives = 95/180 (52%), Gaps = 18/180 (10%)

Query: 329 LLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLT 388
           LLG  +    AG +  CG  V  +   AR                +G  PQFD L+   T
Sbjct: 53  LLG--LTHPDAGSISLCGEPVPSRARHAR--------------QRVGVVPQFDNLDPDFT 96

Query: 389 PREHLEFYSRVRNLPSVLLNTIVNESLNKFA-LGHYSDREVRTLSGGNKRKLSTAIALLG 447
            RE+L  + R   L +     +V   L +FA L + +D +V  LSGG KR+L+ A AL+ 
Sbjct: 97  VRENLLVFGRYFGLSAAAARALV-PPLLEFAKLENKADAKVGELSGGMKRRLTLARALVN 155

Query: 448 NTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
           +  ++ LDEPT+G+DP AR  +W  +   ++ G+ ++LT+H MEE E LC +L ++  G+
Sbjct: 156 DPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGR 215

Length = 306

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score =  112 bits (280), Expect = 2e-25
 Identities = 56/124 (45%), Positives = 76/124 (61%), Gaps = 12/124 (9%)

Query: 99   SMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV 158
            S+L G+LP +SGT  +   DI T++  +R+SLG+CPQ+N LF  LTV EH+ FY+QLK  
Sbjct: 974  SILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGR 1033

Query: 159  PKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAAN 218
              + AQLE+  M+ D G+ HKR   A  LSGGMQRKL              A++F+  A 
Sbjct: 1034 SWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLS------------VAIAFVGDAK 1081

Query: 219  NVIL 222
             V+L
Sbjct: 1082 VVVL 1085

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score =  110 bits (277), Expect = 4e-25
 Identities = 55/152 (36%), Positives = 90/152 (59%), Gaps = 1/152 (0%)

Query: 374  IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
            +G CPQ + L   LT  EH+ FY++++          +   L    L H  + E + LSG
Sbjct: 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSG 1064

Query: 434  GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 493
            G +RKLS AIA +G+  ++ LDEPTSG+DP +RR +W  + +  S GR +I+++H+M+E 
Sbjct: 1065 GMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRS-GRTIIMSTHHMDEA 1123

Query: 494  EALCTKLTIMVNGQFTCLGSATHLKSKYGQGY 525
            + L  ++ I+  G+  C G+   LK+ +G G+
Sbjct: 1124 DLLGDRIAIISQGRLYCSGTPLFLKNCFGTGF 1155

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score =  102 bits (257), Expect = 6e-25
 Identities = 51/149 (34%), Positives = 87/149 (58%), Gaps = 5/149 (3%)

Query: 364 DMKSAPQK--SYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG 421
           D+   PQK    IGY PQ   +    T RE L++ + ++ +PS  +   V+E L    LG
Sbjct: 62  DVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG 121

Query: 422 HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR-RFLWTCIERAVSEG 480
             + +++ +LSGG +R++  A AL+G+  ++ +DEPT+G+DP  R RF     E  + E 
Sbjct: 122 DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSE--LGED 179

Query: 481 RCVILTSHNMEECEALCTKLTIMVNGQFT 509
           R VIL++H +E+ E+LC ++ ++  G+  
Sbjct: 180 RIVILSTHIVEDVESLCNQVAVLNKGKLV 208

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score =  103 bits (259), Expect = 3e-24
 Identities = 53/137 (38%), Positives = 83/137 (60%), Gaps = 2/137 (1%)

Query: 371 KSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFA-LGHYSDREVR 429
           ++ IG  PQFD L+   T RE+L  + R   + +  +  ++  SL +FA L   +D  V 
Sbjct: 113 RARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVI-PSLLEFARLESKADARVS 171

Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
            LSGG KR+L+ A AL+ +  L+ LDEPT+G+DP AR  +W  +   ++ G+ ++LT+H 
Sbjct: 172 DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHF 231

Query: 490 MEECEALCTKLTIMVNG 506
           MEE E LC +L ++  G
Sbjct: 232 MEEAERLCDRLCVLEAG 248

Length = 340

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score =  102 bits (255), Expect = 5e-24
 Identities = 53/137 (38%), Positives = 83/137 (60%), Gaps = 2/137 (1%)

Query: 371 KSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFA-LGHYSDREVR 429
           +  IG  PQFD L+   T RE+L  + R   + +  +  ++  SL +FA L   +D  V 
Sbjct: 76  RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI-PSLLEFARLESKADVRVA 134

Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
            LSGG KR+L+ A AL+ +  L+ LDEPT+G+DP AR  +W  +   ++ G+ ++LT+H 
Sbjct: 135 LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHF 194

Query: 490 MEECEALCTKLTIMVNG 506
           MEE E LC +L ++ +G
Sbjct: 195 MEEAERLCDRLCVLESG 211

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 99.7 bits (249), Expect = 6e-24
 Identities = 45/146 (30%), Positives = 80/146 (54%), Gaps = 2/146 (1%)

Query: 363 LDMKSAPQ--KSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFAL 420
            D+   P   +  +G+      L DRLT RE+LE+++ +  L    L   + E  ++  +
Sbjct: 67  FDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGM 126

Query: 421 GHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEG 480
               DR V   S G ++K++ A AL+ + P++ LDEPT+G+D  A R L   I +  + G
Sbjct: 127 EELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALG 186

Query: 481 RCVILTSHNMEECEALCTKLTIMVNG 506
           +C++ ++H M+E E LC ++ ++  G
Sbjct: 187 KCILFSTHIMQEVERLCDRVVVLHRG 212

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 97.2 bits (243), Expect = 5e-23
 Identities = 36/121 (29%), Positives = 65/121 (53%)

Query: 387 LTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL 446
            T  E + F      LP   +   V E+L    L    DR   TLSGG K++++ A  L 
Sbjct: 91  PTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLA 150

Query: 447 GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 506
            +  ++ LDEPT+G+DP  RR L   +++  +EG+ +I+ +H+++    L  ++ ++ +G
Sbjct: 151 MDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210

Query: 507 Q 507
           +
Sbjct: 211 K 211

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score =  103 bits (259), Expect = 7e-23
 Identities = 46/87 (52%), Positives = 62/87 (71%)

Query: 196  DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALET 255
            DN+KVWFNNK W A VSF+N A+N ILRASLP +   ++Y I  I+ P+NLT +Q++  T
Sbjct: 1613 DNIKVWFNNKGWHALVSFLNVAHNAILRASLPKDRDPEEYGITVISQPLNLTKEQLSEIT 1672

Query: 256  LKKAGTSILVAVTVLFAMSFVPASTVI 282
            +       +VA+ V+FAMSFVPAS V+
Sbjct: 1673 VLTTSVDAVVAICVIFAMSFVPASFVL 1699

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 96.2 bits (240), Expect = 1e-22
 Identities = 40/142 (28%), Positives = 73/142 (51%)

Query: 366 KSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSD 425
                ++ IGY P+   L  ++   + L + ++++ L        ++E L +  L  Y++
Sbjct: 64  LDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN 123

Query: 426 REVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 485
           + V  LS GN++K+    A++ +  L+ LDEP SG+DP     L   I      G+ VIL
Sbjct: 124 KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVIL 183

Query: 486 TSHNMEECEALCTKLTIMVNGQ 507
           ++H ME  E LC ++ ++  G+
Sbjct: 184 STHQMELVEELCDRVLLLNKGR 205

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 93.6 bits (233), Expect = 2e-21
 Identities = 52/149 (34%), Positives = 81/149 (54%)

Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
           IG       L  RLT RE+L++++R+  L    +   + E   +  L  Y DR V   S 
Sbjct: 77  IGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFST 136

Query: 434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 493
           G K+K++ A AL+ +  ++ LDEPTSG+D   RR     I++  +EGR VI +SH M+E 
Sbjct: 137 GMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEV 196

Query: 494 EALCTKLTIMVNGQFTCLGSATHLKSKYG 522
           EALC ++ ++  G+    GS   L ++  
Sbjct: 197 EALCDRVIVLHKGEVVLEGSIEALDARTV 225

Length = 245

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 94.7 bits (236), Expect = 2e-21
 Identities = 55/234 (23%), Positives = 97/234 (41%), Gaps = 11/234 (4%)

Query: 367 SAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDR 426
           S   K+ IGY P+   L  ++T  + L++ + ++ +P   +   +   L +  +     +
Sbjct: 67  SQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTK 126

Query: 427 EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 486
           +++ LS GN++K+    A++    L+ LDEP SG+DP     L   I     EG  +I +
Sbjct: 127 KIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFS 186

Query: 487 SHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSADAQTYLSLN 546
           SH ME  E LC +L ++  GQ    G+   ++  +G+    K    E    D       N
Sbjct: 187 SHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGK----KRLVIES---DLSLEELAN 239

Query: 547 LPVADLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLED 600
           +P    +               +    +F          G I  + L + SL D
Sbjct: 240 IPGILKITETKDGSWRIQIENETVAREIF----QEVARDGYIQRFELQEPSLHD 289

Length = 300

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 87.3 bits (217), Expect = 4e-20
 Identities = 30/77 (38%), Positives = 48/77 (62%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
           LSGG +++++ A ALL N  L+ LDEPTSG+DP +R  L   +     EGR VI+ +H+ 
Sbjct: 81  LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140

Query: 491 EECEALCTKLTIMVNGQ 507
           E  E    ++ ++ +G+
Sbjct: 141 ELAELAADRVIVLKDGK 157

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 90.4 bits (225), Expect = 5e-20
 Identities = 30/97 (30%), Positives = 56/97 (57%)

Query: 100 MLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP 159
           +L G+L  +SG   +  +D+  +   +RR +G  PQ  +L+ +LTV E++ F+++L  + 
Sbjct: 50  ILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS 109

Query: 160 KDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD 196
           K+ A+  I  ++   G+  K      TLSGGM+++L 
Sbjct: 110 KEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLS 146

Length = 293

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 88.1 bits (219), Expect = 3e-19
 Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 4/84 (4%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           +ILDEPTSG+DP SRR IWELL +   A     G T++L+TH ++EA+ L DR+ I+  G
Sbjct: 158 LILDEPTSGLDPESRREIWELLRE--LAKEG--GVTILLSTHILEEAEELCDRVIILNDG 213

Query: 341 KLQCCGSSVFLKNSFARGYYLSLD 364
           K+   G+   LK  F     + L+
Sbjct: 214 KIIAEGTPEELKEKFGGKGVIELE 237

Length = 293

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 84.4 bits (210), Expect = 5e-19
 Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 6/75 (8%)

Query: 269 VLFAMSFVP-ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA 327
           +  A + +     +ILDEPTSG+DP SRR  WELL +         G+T++L++H ++EA
Sbjct: 104 LALAQALLHDPELLILDEPTSGLDPESRREFWELLRE--LKKE---GKTILLSSHILEEA 158

Query: 328 DLLGDRIAIIAAGKL 342
           + L DR+AI+  G++
Sbjct: 159 ERLCDRVAILNNGRI 173

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 85.3 bits (212), Expect = 5e-19
 Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 4/126 (3%)

Query: 382 ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 441
                LT RE+L   +R+  +        ++E L+   L   + ++V+  S G K++L  
Sbjct: 82  GFYPNLTARENLRLLARLLGIR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGI 137

Query: 442 AIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLT 501
           A+ALLGN  L+ LDEPT+G+DP   + L   I     +G  V+++SH + E + +  ++ 
Sbjct: 138 ALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIG 197

Query: 502 IMVNGQ 507
           I+  G+
Sbjct: 198 IINKGK 203

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 80.5 bits (199), Expect = 3e-17
 Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 5/82 (6%)

Query: 272 AMSFVPASTVI-LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLL 330
           A S V    V+ LDEPT G+DP +R  +WE  I+         G T++LTTHYM+EA+ L
Sbjct: 143 ARSLVHRPEVLFLDEPTIGLDPQTRAHVWEY-IEKLKEEF---GMTILLTTHYMEEAEQL 198

Query: 331 GDRIAIIAAGKLQCCGSSVFLK 352
            DR+AII  G++   G+   LK
Sbjct: 199 CDRVAIIDHGRIIAEGTPEELK 220

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 79.6 bits (197), Expect = 8e-17
 Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 1/99 (1%)

Query: 410 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFL 469
            V E+L    L    DR    LSGG K++++ A  L     ++ LDEPT+G+DP  RR L
Sbjct: 118 RVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRREL 177

Query: 470 WTCIER-AVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
              +++     G+ +I+ +H++E       ++ ++ +G+
Sbjct: 178 LELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGK 216

Length = 235

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 80.0 bits (198), Expect = 8e-17
 Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 11/195 (5%)

Query: 350 FLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEF-----YSRVRNL-- 402
            LK S          ++   ++  IGY PQ  ++ DR  P    +      Y +      
Sbjct: 53  LLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSV-DRSFPITVKDVVLLGRYGKKGWFRR 111

Query: 403 PSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
            +      V+E+L +  +    DR++  LSGG K+++  A AL  N  L+ LDEP +G+D
Sbjct: 112 LNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVD 171

Query: 463 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS--ATHLKSK 520
              ++ ++  ++    EG+ V++ +H++    A   +  I +N      G       +  
Sbjct: 172 VAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDR-VICLNRHLIASGPPEEVLTEEN 230

Query: 521 YGQGYSVKVRCAEGR 535
             + +   +  A   
Sbjct: 231 LEKAFGGSLAHALAG 245

Length = 254

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 79.7 bits (197), Expect = 2e-16
 Identities = 38/82 (46%), Positives = 52/82 (63%), Gaps = 6/82 (7%)

Query: 272 AMSFVPASTVI-LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLL 330
           A S +    V+ LDEPT+G+DP +RR+IW+     Y  +    G T++LTTHYM+EAD L
Sbjct: 136 AASLIHQPDVLFLDEPTTGLDPRTRRAIWD-----YIRALKEEGVTILLTTHYMEEADKL 190

Query: 331 GDRIAIIAAGKLQCCGSSVFLK 352
            DRIAII  G++   G+   LK
Sbjct: 191 CDRIAIIDHGRIIAEGTPEELK 212

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 77.6 bits (192), Expect = 2e-16
 Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 30/138 (21%)

Query: 371 KSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRT 430
           +  IGY PQ D L+  LT RE L F        +  L                     R 
Sbjct: 81  RKIIGYVPQDDILHPTLTVRETLMF--------AAKL---------------------RG 111

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
           LSGG ++++S A+ L+ N  L+FLDEPTSG+D  +   + + + R    GR +I + H  
Sbjct: 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQP 171

Query: 491 -EECEALCTKLTIMVNGQ 507
             E   L  KL ++  G+
Sbjct: 172 SSEIFELFDKLLLLSQGR 189

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 31/98 (31%), Positives = 54/98 (55%)

Query: 99  SMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV 158
            ML  +L  +SGTA++  +D+  +   +RRS+G+ PQY ++ + LT  E++    +L  +
Sbjct: 37  RMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGL 96

Query: 159 PKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD 196
           PKD A+     ++    +         T SGGM+R+LD
Sbjct: 97  PKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLD 134

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 75.0 bits (185), Expect = 2e-15
 Identities = 31/102 (30%), Positives = 50/102 (49%)

Query: 408 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARR 467
           N      L    L    +R   +LSGG K++L+ A ALL    L+  DEPTSG+D     
Sbjct: 104 NEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNME 163

Query: 468 FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT 509
            +   I    ++G+ VI+ +H+ E    +C ++ ++ NG   
Sbjct: 164 RVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 77.1 bits (190), Expect = 2e-15
 Identities = 47/180 (26%), Positives = 87/180 (48%), Gaps = 15/180 (8%)

Query: 339 AGKLQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSR 398
           +G +Q CG  V L+N            +       IGY P+ + L   +  RE+L+F + 
Sbjct: 56  SGSVQVCGEDV-LQNP----------KEVQR---NIGYLPEHNPLYLDMYVREYLQFIAG 101

Query: 399 VRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPT 458
           +  +   LL   V E +    L     +++  LS G ++++  A AL+ +  ++ LDEPT
Sbjct: 102 IYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPT 161

Query: 459 SGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 518
           +G+DP     +   I + + + + +IL++H M+E EA+C ++ I+  G+         L 
Sbjct: 162 TGLDPNQLVEIRNVI-KNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELS 220

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 75.2 bits (186), Expect = 3e-15
 Identities = 30/97 (30%), Positives = 48/97 (49%)

Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
             E L +  L   +DR    LS G +R+L  A AL  +  L+ LDEP +G++P     L 
Sbjct: 124 AEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELA 183

Query: 471 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
             I      G  V+L  H+M+   +L  ++T++  G+
Sbjct: 184 ELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGR 220

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 74.3 bits (183), Expect = 4e-15
 Identities = 29/98 (29%), Positives = 54/98 (55%)

Query: 99  SMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV 158
            ML  +L  +SG A +  HD+  +   +RR +G+  Q  ++ D+LT  E+++ +++L  V
Sbjct: 44  KMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGV 103

Query: 159 PKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD 196
           P    +  I  ++  +G+      L  T SGGM+R+L+
Sbjct: 104 PGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLE 141

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 73.9 bits (182), Expect = 9e-15
 Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 3/135 (2%)

Query: 364 DMKSAPQK--SYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG 421
           D++ AP+   + +G   Q   L+  L+ R++L +++ +  L        + E L +  L 
Sbjct: 64  DLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLA 123

Query: 422 HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIER-AVSEG 480
             +D +VR L+GG++R++  A ALL    L+ LDEPT G+DP +R  +   +   A  +G
Sbjct: 124 ERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG 183

Query: 481 RCVILTSHNMEECEA 495
             V+  +H ++E EA
Sbjct: 184 LSVLWATHLVDEIEA 198

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 77.4 bits (190), Expect = 1e-14
 Identities = 42/113 (37%), Positives = 63/113 (55%), Gaps = 16/113 (14%)

Query: 281  VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
            V+LDEPT+G+DP +RR +W  ++ +        GR V+LT+H M+E + L  R+AI+  G
Sbjct: 2092 VLLDEPTTGMDPQARRMLWNTIVSIIR-----EGRAVVLTSHSMEECEALCTRLAIMVKG 2146

Query: 341  KLQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHL 393
              QC G+   LK+ F  GY +++ +KS          P+ D L D L P E  
Sbjct: 2147 AFQCLGTIQHLKSKFGDGYIVTMKIKS----------PKDDLLPD-LNPVEQF 2188

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 72.9 bits (180), Expect = 1e-14
 Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 1/141 (0%)

Query: 368 APQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDRE 427
            P++  IG   Q  AL   LT  E++ F  ++R +P   +   V E L    L    +R 
Sbjct: 68  PPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRY 127

Query: 428 VRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILT 486
              LSGG +++++ A AL     L+ LDEP S +D   R  L   ++    E G   I  
Sbjct: 128 PHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYV 187

Query: 487 SHNMEECEALCTKLTIMVNGQ 507
           +H+ EE  AL  ++ +M  G+
Sbjct: 188 THDQEEALALADRIAVMNEGR 208

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 73.8 bits (182), Expect = 1e-14
 Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 19/164 (11%)

Query: 374 IGYCPQFDALNDRLTPRE--------HLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSD 425
           + Y PQ  +    LT  E        HL  + R    PS     IV E+L    L H +D
Sbjct: 78  LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGR----PSKEDEEIVEEALELLGLEHLAD 133

Query: 426 REVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVI 484
           R V  LSGG ++++  A AL   TP++ LDEPTS +D   +  +     +    +G  V+
Sbjct: 134 RPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVV 193

Query: 485 LTSHNMEECEALCTKLTIMVNGQFTCLGSAT------HLKSKYG 522
           +  H++         L ++ +G+    G+        +L+  YG
Sbjct: 194 MVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVYG 237

Length = 258

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 70.7 bits (174), Expect = 2e-14
 Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 5/64 (7%)

Query: 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII 337
              ++LDEPTSG+DP SR  + ELL +      +  GRTVI+ TH  + A+L  DR+ ++
Sbjct: 99  PDLLLLDEPTSGLDPASRERLLELLRE-----LAEEGRTVIIVTHDPELAELAADRVIVL 153

Query: 338 AAGK 341
             GK
Sbjct: 154 KDGK 157

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 71.4 bits (176), Expect = 4e-14
 Identities = 45/197 (22%), Positives = 83/197 (42%), Gaps = 23/197 (11%)

Query: 331 GDRIAIIA---AGKLQCCGSSVFLK-----NSFARGYYLSLDMKSAPQKSYIGYCPQFDA 382
           G+ +AI+    AGK      S  LK          G           ++  IGY PQ  +
Sbjct: 25  GEFLAIVGPNGAGK------STLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRS 78

Query: 383 LNDRLTPREHLEFYSRVRNLPSVLLNTI-------VNESLNKFALGHYSDREVRTLSGGN 435
           + DR  P    +           L   +       V+E+L +  L   +DR++  LSGG 
Sbjct: 79  I-DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQ 137

Query: 436 KRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEA 495
           ++++  A AL+ +  L+ LDEP +G+DP  +  ++  +     EG  +++ +H++     
Sbjct: 138 QQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLE 197

Query: 496 LCTKLTIMVNGQFTCLG 512
              +  +++N      G
Sbjct: 198 YFDR-VLLLNRTVVASG 213

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 71.5 bits (176), Expect = 4e-14
 Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 6/120 (5%)

Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTI-----VNESLNKFALGHYSDREV 428
           + Y  Q D L   LT RE L + + +R LP    + I      +  L   AL       V
Sbjct: 83  VAYVRQDDILLPGLTVRETLTYTAILR-LPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV 141

Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
           + +SGG +R++S A+ LL +  ++ LDEPTSG+D      L + + +     R VILT H
Sbjct: 142 KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIH 201

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 70.2 bits (173), Expect = 5e-14
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 1/104 (0%)

Query: 410 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG-ARRF 468
            V ++L    L H +DR    LSGG ++++  A AL    P++ LDEPTS +D       
Sbjct: 77  YVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIEL 136

Query: 469 LWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 512
           L      A   G+ V++  H++        ++ ++ +G+    G
Sbjct: 137 LELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 71.6 bits (176), Expect = 5e-14
 Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 1/140 (0%)

Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV 428
           P+K  I Y PQ  AL   +T  +++ +  + R +    +   V E      + H  +R+ 
Sbjct: 68  PEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP 127

Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTS 487
            TLSGG +++++ A AL+ N  ++ LDEP S +D   +  L   +++   E G  V+  +
Sbjct: 128 ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVT 187

Query: 488 HNMEECEALCTKLTIMVNGQ 507
           H+ EE  AL  K+ IM+NG+
Sbjct: 188 HDFEEAWALADKVAIMLNGK 207

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 70.4 bits (173), Expect = 7e-14
 Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 5/141 (3%)

Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEF-YSRVRNLPSVLLNTIVNESLNKFALGHYSDRE 427
           PQ+  IG   Q  AL   L  RE+L F   R RN    +    V+E L+   L H  +R 
Sbjct: 72  PQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRIS---VDELLDLLGLDHLLNRY 128

Query: 428 VRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILT 486
              LSGG K++++ A AL     L+ LDEP S +D   R  L   +++        VI  
Sbjct: 129 PAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFV 188

Query: 487 SHNMEECEALCTKLTIMVNGQ 507
           +H++ E E L  ++ +M +G+
Sbjct: 189 THDLSEAEYLADRIVVMEDGR 209

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 70.3 bits (172), Expect = 2e-13
 Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 1/145 (0%)

Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVR-NLPSVLLNTIVNESLNKFALGHYSDREVRTLS 432
           IGY PQ  ++  RL+  ++L    ++R +L +       NE + +F + H  D   ++LS
Sbjct: 80  IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLS 139

Query: 433 GGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE 492
           GG +R++  A AL  N   I LDEP +G+DP +   +   IE     G  V++T HN+ E
Sbjct: 140 GGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRE 199

Query: 493 CEALCTKLTIMVNGQFTCLGSATHL 517
             A+C +  I+  G     G+ T +
Sbjct: 200 TLAVCERAYIVSQGHLIAHGTPTEI 224

Length = 241

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 69.4 bits (170), Expect = 2e-13
 Identities = 42/125 (33%), Positives = 69/125 (55%), Gaps = 4/125 (3%)

Query: 382 ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 441
            L + LT RE+L+ ++ +  LP    ++ ++E LN   L +   ++ +  S G K++L  
Sbjct: 80  PLYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGI 135

Query: 442 AIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLT 501
           AIALL +  L+ LDEPT+G+DP   + L   I     +G  VIL+SH + E + L   + 
Sbjct: 136 AIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIG 195

Query: 502 IMVNG 506
           I+  G
Sbjct: 196 IISEG 200

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 69.3 bits (170), Expect = 7e-13
 Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 23/142 (16%)

Query: 394 EFYSRVRNLPSVL-LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLI 452
           EF  R+  L  +L L   +                VR LS G + +   A ALL    ++
Sbjct: 132 EFAERLDFLTEILDLEGFLKW-------------PVRKLSLGQRMRAELAAALLHPPKVL 178

Query: 453 FLDEPTSGMDPGA----RRFL-WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
           FLDEPT G+D  A    R FL     ER  +    V+LT+H  ++   LC ++ ++  GQ
Sbjct: 179 FLDEPTVGLDVNAQANIREFLKEYNEERQAT----VLLTTHIFDDIATLCDRVLLIDQGQ 234

Query: 508 FTCLGSATHLKSKYGQGYSVKV 529
               G+   L+ ++G      V
Sbjct: 235 LVFDGTLAQLQEQFGPYKEFSV 256

Length = 325

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 17/175 (9%)

Query: 331 GDRIAIIAAGKLQCCGSSVFLK-----NSFARGYYLSLDMKSAPQKS---------YIGY 376
           G   AII  G+    G S  L        F  G       ++ P  S          +GY
Sbjct: 24  GKMYAII--GE-SGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASKFRREKLGY 80

Query: 377 CPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNK 436
             Q  AL +  T  E+L+   + + L          E+L K  L     +++  LSGG +
Sbjct: 81  LFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQ 140

Query: 437 RKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 491
           ++++ A A+L   PLI  DEPT  +DP  R  +   +     EG+ +I+ +H+ E
Sbjct: 141 QRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE 195

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 65.9 bits (161), Expect = 2e-12
 Identities = 25/81 (30%), Positives = 46/81 (56%)

Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
           V E+L         +R    LSGG K++++ A A+     ++ LDEPT+G+DP  R  + 
Sbjct: 108 VREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQML 167

Query: 471 TCIERAVSEGRCVILTSHNME 491
             + R  +EG  V++++H+++
Sbjct: 168 AILRRLRAEGMTVVISTHDVD 188

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 69.5 bits (171), Expect = 2e-12
 Identities = 26/85 (30%), Positives = 49/85 (57%)

Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484
           ++ + TLSGGN++K+  A  L  +  ++ LDEPT G+D GA+  ++  I    +EG+ ++
Sbjct: 396 EQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAIL 455

Query: 485 LTSHNMEECEALCTKLTIMVNGQFT 509
           + S  + E   L  ++ +M  G+  
Sbjct: 456 MISSELPELLGLSDRILVMREGRIV 480

Length = 500

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 6/87 (6%)

Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDRE-VRTLS 432
           IG   Q   L   LT RE+L F      L     +    E+L +  L  + DRE V TLS
Sbjct: 38  IGVVFQDPQLFPELTVRENLFF-----GLRDKEADARAEEALERVGLPDFLDREPVGTLS 92

Query: 433 GGNKRKLSTAIALLGNTPLIFLDEPTS 459
           GG K++++ A ALL    L+ LDEPT+
Sbjct: 93  GGQKQRVAIARALLKKPKLLLLDEPTA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 66.1 bits (162), Expect = 3e-12
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 4/109 (3%)

Query: 381 DALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLS 440
           +A+   LT  E+LEF++             +  +L    L   +      LS G KR+++
Sbjct: 82  NAMKPALTVAENLEFWAAFLGGE----ELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVA 137

Query: 441 TAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
            A  L+ N P+  LDEPT+ +D  A       I   +++G  VI  +H 
Sbjct: 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHI 186

Length = 207

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 1/121 (0%)

Query: 387 LTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL 446
           L   +     + + +LP       ++E      L    D  VR LS G + +   A ALL
Sbjct: 110 LPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALL 169

Query: 447 GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVN 505
               ++FLDEPT G+D  A+  +   ++    E G  V+LTSH M++ EAL  ++ ++  
Sbjct: 170 HEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDK 229

Query: 506 G 506
           G
Sbjct: 230 G 230

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 12/153 (7%)

Query: 337 IAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAPQKS-YIGYCPQFDALNDRLTPREHLEF 395
           I AG L+     V+ +        +    +S  Q   Y+G+ P    +   LT  E+L F
Sbjct: 47  ILAGLLRPDAGEVYWQGE-----PIQNVRESYHQALLYLGHQP---GIKTELTALENLHF 98

Query: 396 YSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLD 455
           + R     S    TI  E+L +  L    D  V  LS G +R+++ A   L   PL  LD
Sbjct: 99  WQRFHG--SGNAATIW-EALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILD 155

Query: 456 EPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
           EP + +D      L   +    ++G  V+LT+H
Sbjct: 156 EPFTALDKEGVALLTALMAAHAAQGGIVLLTTH 188

Length = 209

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 63.7 bits (156), Expect = 7e-12
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 4/60 (6%)

Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
           +LDEPTS +DP +RR +  LL  +     +  G TV+L TH +DEA  L DR+ ++  GK
Sbjct: 123 LLDEPTSALDPITRREVRALLKSL----QAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 67.7 bits (165), Expect = 1e-11
 Identities = 35/96 (36%), Positives = 57/96 (59%)

Query: 100  MLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP 159
            ML G   V+SG A +    I T+++ + +++G CPQ++A+ D LT  EH++ Y++L+ VP
Sbjct: 1984 MLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVP 2043

Query: 160  KDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
             +  +   +  I  LG+      LA T SGG +RKL
Sbjct: 2044 AEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKL 2079

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 66.0 bits (161), Expect = 1e-11
 Identities = 30/63 (47%), Positives = 45/63 (71%), Gaps = 9/63 (14%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSL--SGRTVILTTHYMDEADLLGDRIAIIA 338
           +ILDEPT+G+DP++R  IWE L        SL   G+T++LTTH+M+EA+ L DR+ ++ 
Sbjct: 194 LILDEPTTGLDPHARHLIWERL-------RSLLARGKTILLTTHFMEEAERLCDRLCVLE 246

Query: 339 AGK 341
           AG+
Sbjct: 247 AGR 249

Length = 340

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 64.5 bits (158), Expect = 1e-11
 Identities = 40/134 (29%), Positives = 68/134 (50%)

Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
           IGY PQ  ++  +LT  E++     +R L        + E L +F + H    +  +LSG
Sbjct: 77  IGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSG 136

Query: 434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 493
           G +R++  A AL  N   + LDEP +G+DP A + +   I+     G  V++T HN+ E 
Sbjct: 137 GERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRET 196

Query: 494 EALCTKLTIMVNGQ 507
            ++  +  I+  G+
Sbjct: 197 LSITDRAYIIYEGK 210

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 63.2 bits (155), Expect = 1e-11
 Identities = 27/78 (34%), Positives = 45/78 (57%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
           LSGGN++K+  A  L  +  ++ LDEPT G+D GA+  ++  I      G+ V+L S  +
Sbjct: 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL 164

Query: 491 EECEALCTKLTIMVNGQF 508
           +E   LC ++ +M  G+ 
Sbjct: 165 DELLGLCDRILVMYEGRI 182

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 35/118 (29%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           ++LDEPT+G+DP +R  +WE L      S    G+T++LTTH+M+EA+ L DR+ +I  G
Sbjct: 160 LVLDEPTTGLDPQARHLMWERL-----RSLLARGKTILLTTHFMEEAERLCDRLCVIEEG 214

Query: 341 KLQCCGSSVFLKNSFARGYYLSLDMKSAPQK---SYIG------YCPQFDALNDRLTP 389
           +              A G         AP     S IG      Y P   AL D L P
Sbjct: 215 R------------KIAEG---------APHALIESEIGCDVIEIYGPDPVALRDELAP 251

Length = 306

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 65.0 bits (158), Expect = 2e-11
 Identities = 28/61 (45%), Positives = 44/61 (72%), Gaps = 5/61 (8%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           +ILDEPT+G+DP++R  IWE L      S    G+T++LTTH+M+EA+ L DR+ ++ +G
Sbjct: 157 LILDEPTTGLDPHARHLIWERL-----RSLLARGKTILLTTHFMEEAERLCDRLCVLESG 211

Query: 341 K 341
           +
Sbjct: 212 R 212

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 63.3 bits (155), Expect = 2e-11
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 5/61 (8%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           ++LDEPT+G+DP  RR + ELL K+        G+T+I+ TH +D    L DR+ ++  G
Sbjct: 156 LLLDEPTAGLDPAGRRELLELLKKL-----KAEGKTIIIVTHDLDLLLELADRVIVLEDG 210

Query: 341 K 341
           K
Sbjct: 211 K 211

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 8/99 (8%)

Query: 100 MLMGMLPVSSGTAKIYDHDIRTDMTT--IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ 157
           ++ G+L  +SGT  +   D     +   +R+ +GV  Q   LF +LTV E+++F      
Sbjct: 6   LITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG----- 60

Query: 158 VPKDLAQLEISNMIGDLGIPHKR-TSLANTLSGGMQRKL 195
           +    A       +  +G+P         TLSGG ++++
Sbjct: 61  LRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRV 99

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 64.5 bits (158), Expect = 2e-11
 Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 3/137 (2%)

Query: 374 IGYCPQFDALNDRLTPREHLEFYSRV-RNLPSVLLNTIVNESLNKFAL-GHYSDREVRTL 431
           +G   Q  AL   LT  E++ F  R    LP  L+  +V   L    L G  +D     L
Sbjct: 87  MGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSEL 146

Query: 432 SGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVILTSHNM 490
           SGG +++++ A A+  +  L+FLDEPTSG+DP  A        E   + G  VI+ +H++
Sbjct: 147 SGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL 206

Query: 491 EECEALCTKLTIMVNGQ 507
           +    +  ++ ++ +G+
Sbjct: 207 DSLLTIADRVAVLADGK 223

Length = 263

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 2/147 (1%)

Query: 374 IGYCPQFDALNDRLTPREHLEFYSRV-RNLPSVLLNTIVNESLNKFALGHYSDREVRTLS 432
           +G   Q  AL D LT  E++ F  R    L    +  IV E L    L    D     LS
Sbjct: 79  MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELS 138

Query: 433 GGNKRKLSTAIALLGNTPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVILTSHNME 491
           GG K++++ A AL  +  L+  DEPT+G+DP  +              G   I+ +H+++
Sbjct: 139 GGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD 198

Query: 492 ECEALCTKLTIMVNGQFTCLGSATHLK 518
              A+  ++ ++ +G+    G+   L+
Sbjct: 199 TAFAIADRIAVLYDGKIVAEGTPEELR 225

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 281 VIL-DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA 339
           ++L DEP   +DP +R+ + E + ++        G+T++  TH +DEA  L DRIA++ A
Sbjct: 156 ILLMDEPFGALDPITRKQLQEEIKEL----QKELGKTIVFVTHDIDEALKLADRIAVMDA 211

Query: 340 GKLQCCGS 347
           G++    +
Sbjct: 212 GEIVQYDT 219

Length = 309

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 1/96 (1%)

Query: 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG-ARRFLWT 471
           E L    LG  +DR    LS G +R+L  A AL     L+ LDEP +G++P         
Sbjct: 132 ELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAEL 191

Query: 472 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
             E     G  ++L  H+M+    L  ++ ++  G+
Sbjct: 192 IRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGE 227

Length = 250

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 62.2 bits (152), Expect = 3e-11
 Identities = 24/78 (30%), Positives = 49/78 (62%), Gaps = 1/78 (1%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 489
           LSGG +++++ A AL  +  ++ LDEPTS +DP  RR +   ++   ++ G  V+L +H+
Sbjct: 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHD 160

Query: 490 MEECEALCTKLTIMVNGQ 507
           ++E   L  ++ ++ +G+
Sbjct: 161 LDEAARLADRVVVLRDGK 178

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 51/210 (24%), Positives = 91/210 (43%), Gaps = 16/210 (7%)

Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEF-YSRVRNLPSVLLNTIVNESLNKFALGHYSDRE 427
           P+K  IGY  Q   L   L+ R +L +   R R     +    V E L    +GH   R 
Sbjct: 72  PEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLG---IGHLLGRL 128

Query: 428 VRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILT 486
              LSGG K++++   ALL +  L+ +DEP + +D   +  +   +ER  +E    ++  
Sbjct: 129 PGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYV 188

Query: 487 SHNMEECEALCTKLTIMVNGQFTCLGSATHLKS--------KYGQGYSVKVRCAEGRSAD 538
           SH+++E   L  ++ ++ +G+    G    + +        +  QG  ++   AE     
Sbjct: 189 SHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLAREDQGSLIEGVVAEHDQHY 248

Query: 539 AQTYLSLN---LPVADLVETHATQLQYRIS 565
             T L L    L V + +     +L+ R+ 
Sbjct: 249 GLTALRLGGGHLWVPENLGPTGARLRLRVP 278

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 65.5 bits (160), Expect = 3e-11
 Identities = 27/85 (31%), Positives = 49/85 (57%)

Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484
           ++  RTLSGGN++K+  A  L  +  L+ +DEPT G+D  AR  ++  I    ++   V+
Sbjct: 398 EQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVL 457

Query: 485 LTSHNMEECEALCTKLTIMVNGQFT 509
             S ++EE E +  ++ +M  G+ +
Sbjct: 458 FISSDLEEIEQMADRVLVMHQGEIS 482

Length = 510

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 65.2 bits (160), Expect = 4e-11
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 2/87 (2%)

Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG-ARRFLWTCIERAVSEGRCV 483
           D  V  LS   ++ +  A AL  +  ++ LDEPT+ +      R     I R  ++G  +
Sbjct: 140 DTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDL-IRRLKAQGVAI 198

Query: 484 ILTSHNMEECEALCTKLTIMVNGQFTC 510
           I  SH ++E   +  ++T++ +G+   
Sbjct: 199 IYISHRLDEVFEIADRITVLRDGRVVG 225

Length = 500

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 62.4 bits (152), Expect = 4e-11
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 7/116 (6%)

Query: 373 YIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLS 432
           Y+G+ P    L   L+  E+L F++ +           + ++L    L  + D     LS
Sbjct: 77  YLGHLP---GLKPELSALENLHFWAAIHGGAQ----RTIEDALAAVGLTGFEDLPAAQLS 129

Query: 433 GGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
            G +R+L+ A   L   PL  LDEPT+ +D      L   +   ++ G  V+LT+H
Sbjct: 130 AGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTH 185

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 61.5 bits (150), Expect = 6e-11
 Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 29/116 (25%)

Query: 373 YIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLS 432
             GY  Q D  +  LT RE L F        S LL                     R LS
Sbjct: 80  STGYVEQQDVHSPNLTVREALRF--------SALL---------------------RGLS 110

Query: 433 GGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
              +++L+  + L     ++FLDEPTSG+D  A   +   +++    G+ ++ T H
Sbjct: 111 VEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIH 166

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 62.3 bits (152), Expect = 7e-11
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
           ++DEP   +DP +R  + E   ++        G+T++  TH +DEA  L DRIAI+  G+
Sbjct: 158 LMDEPFGALDPITRDQLQEEFKRL----QQELGKTIVFVTHDIDEAFRLADRIAIMKNGE 213

Query: 342 LQCCGS 347
           +   G+
Sbjct: 214 IVQVGT 219

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 62.1 bits (151), Expect = 8e-11
 Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 1/150 (0%)

Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV 428
            +   IG+  Q  AL   LT R+++ F   +R  P   +   V E L    L    DR  
Sbjct: 69  ARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP 128

Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV-ILTS 487
             LSGG +++++ A AL     ++ LDEP   +D   R+ L + + +   E     +  +
Sbjct: 129 NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVT 188

Query: 488 HNMEECEALCTKLTIMVNGQFTCLGSATHL 517
           H+ EE   +  ++ +M NG+   +GS   +
Sbjct: 189 HDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 60.5 bits (148), Expect = 9e-11
 Identities = 25/77 (32%), Positives = 43/77 (55%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
           LS G ++ +  A AL  N  L+ LDEPT+ + P     L+  I R  ++G  VI  SH +
Sbjct: 83  LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142

Query: 491 EECEALCTKLTIMVNGQ 507
           +E   +  ++T++ +G+
Sbjct: 143 DEVFEIADRVTVLRDGR 159

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 62.2 bits (152), Expect = 9e-11
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 2/143 (1%)

Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRN-LPSVLLNTI-VNESLNKFALGHYSDREVRTL 431
           IGY PQ  ++  +LT  +++     +R            ++  L +F + H  D +  +L
Sbjct: 81  IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSL 140

Query: 432 SGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 491
           SGG +R++  A AL  N   I LDEP +G+DP A   +   I+     G  V++T HN+ 
Sbjct: 141 SGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR 200

Query: 492 ECEALCTKLTIMVNGQFTCLGSA 514
           E   +C +  I+ +G+    GS 
Sbjct: 201 ETLDICDRAYIISDGKVLAEGSP 223

Length = 243

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
           LGP+G   G  TL        +L  + P SSGT +I   D+      +RR +G  PQ   
Sbjct: 31  LGPNGA--GKTTL------MRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFG 82

Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
           ++   TV E + + + LK +P    +  +  ++  + +  +      +LSGGM+R++
Sbjct: 83  VYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRV 139

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 63.9 bits (156), Expect = 1e-10
 Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 10/153 (6%)

Query: 375 GYCPQFDALNDRLTPREHLEFYSRVR---NLPSVLLNTIVNESLNKFALGHYSD------ 425
            Y  Q D     LT REHL F + +R    +        V+E L    L   ++      
Sbjct: 102 AYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVP 161

Query: 426 REVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 485
             V+ LSGG +++L+ A  LL + PL+F DEPTSG+D      +   ++    +G+ +I 
Sbjct: 162 GRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIIC 221

Query: 486 TSHN-MEECEALCTKLTIMVNGQFTCLGSATHL 517
           T H    E   L  K+ +M  G+   LGS    
Sbjct: 222 TIHQPSSELFELFDKIILMAEGRVAYLGSPDQA 254

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 264 LVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHY 323
            VA+  + AM       ++LDEPT+G+DP  RR + ELL K+        G+T+I+ TH 
Sbjct: 146 RVAIAGVLAMG---PEILLLDEPTAGLDPKGRRELLELLKKL----KEEGGKTIIIVTHD 198

Query: 324 MDEADLLGDRIAIIAAGKLQCCGS 347
           ++      DR+ ++  GK+   G 
Sbjct: 199 LELVLEYADRVVVLDDGKILADGD 222

Length = 235

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 16/207 (7%)

Query: 366 KSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVR--NLPSVLLNTIVNESLNKFALGHY 423
             A +   +G+  Q  AL   +T  +++ F  +VR        +   V E L    L   
Sbjct: 71  NLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGL 130

Query: 424 SDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR----RFLWTCIERAVSE 479
           +DR    LSGG +++++ A AL     ++ LDEP   +D   R    R+L    +R    
Sbjct: 131 ADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR---L 187

Query: 480 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA----THLKSKYGQGYSVKVRCAEGR 535
           G   +  +H+ EE   L  ++ ++  G+   +G       H  S++   +  +V    G 
Sbjct: 188 GVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRFVARFLGEVNVLPGE 247

Query: 536 SADAQTYLS---LNLPVADLVETHATQ 559
               Q  +    + LP+  L +  A  
Sbjct: 248 VILGQLQVGAHDIGLPLQPLPDGKADL 274

Length = 345

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 1/155 (0%)

Query: 368 APQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDRE 427
            P+K  I    Q  AL   +T  E++ F  ++R +P   ++  V E      L H  +R+
Sbjct: 71  PPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRK 130

Query: 428 VRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVILT 486
              LSGG +++++ A AL+    +  LDEP S +D   R  + + I++     G   I  
Sbjct: 131 PLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYV 190

Query: 487 SHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKY 521
           +H+  E   L  ++ +M +G+   +G+   L  + 
Sbjct: 191 THDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225

Length = 338

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 59.9 bits (145), Expect = 3e-10
 Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 5/115 (4%)

Query: 403 PSVLLNTIVNESLNKFA----LGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPT 458
           P + LN    E +   A    +  Y DR    LSGG +++++ A  L+   P++ LDEP 
Sbjct: 97  PGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPF 156

Query: 459 SGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 512
           S +DP  R  +   +++  SE  R +++ +H++ +  A+ +++ ++  G+   + 
Sbjct: 157 SALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 60.1 bits (147), Expect = 3e-10
 Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 3/135 (2%)

Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKF-ALGHYSDREVRTLS 432
           IGY P+   +   LT  E+L   +  R          +      F  L     +   TLS
Sbjct: 77  IGYVPEGRRIFPELTVEENLLLGAYARRRAKR--KARLERVYELFPRLKERRKQLAGTLS 134

Query: 433 GGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE 492
           GG ++ L+ A AL+    L+ LDEP+ G+ P     ++  I     EG  ++L   N   
Sbjct: 135 GGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARF 194

Query: 493 CEALCTKLTIMVNGQ 507
              +  +  ++  G+
Sbjct: 195 ALEIADRAYVLERGR 209

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 60.5 bits (147), Expect = 4e-10
 Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 1/126 (0%)

Query: 379 QFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRK 438
           Q +AL   L   +++ F  ++R +       I ++ L    L     + +  LSGG +++
Sbjct: 81  QNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQR 140

Query: 439 LSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTC-IERAVSEGRCVILTSHNMEECEALC 497
           +  A AL     L+ LDEP   +D   R  +    ++     G+ V+L +H++EE   L 
Sbjct: 141 VGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLA 200

Query: 498 TKLTIM 503
           T+L ++
Sbjct: 201 TRLVVL 206

Length = 259

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 60.3 bits (147), Expect = 4e-10
 Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 11/183 (6%)

Query: 331 GDRIAIIAA-GKLQCCGSSVFLK-----NSFARGYYLSLDMKSAPQKSYIGYCPQFDALN 384
           G+ +AI+   G    CG S  L+          G  L            IGY  Q DAL 
Sbjct: 29  GEFVAILGPSG----CGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALL 84

Query: 385 DRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA 444
             LT  +++     +R            E L    L  + D+    LSGG +++++ A A
Sbjct: 85  PWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARA 144

Query: 445 LLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHNMEECEALCTKLTIM 503
           L     L+ LDEP   +D   R  L   + R   E R  V+L +H+++E   L  ++ ++
Sbjct: 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVL 204

Query: 504 VNG 506
            N 
Sbjct: 205 SNR 207

Length = 248

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 60.3 bits (147), Expect = 5e-10
 Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 4/67 (5%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           + LDEPTSG+DP S   I EL+ ++   + +L G TVI+ TH +D    + DR+A++A G
Sbjct: 167 LFLDEPTSGLDPISAGVIDELIREL---NDAL-GLTVIMVTHDLDSLLTIADRVAVLADG 222

Query: 341 KLQCCGS 347
           K+   G+
Sbjct: 223 KVIAEGT 229

Length = 263

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 59.0 bits (144), Expect = 5e-10
 Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 6/116 (5%)

Query: 373 YIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLS 432
           Y+G+ P    +   LT  E+L FY R+        +  + E+L +  L  + D  VR LS
Sbjct: 78  YLGHQP---GIKTELTALENLRFYQRLHGPGD---DEALWEALAQVGLAGFEDVPVRQLS 131

Query: 433 GGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
            G +R+++ A   L   PL  LDEP + +D      L   + +   +G  VILT+H
Sbjct: 132 AGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTH 187

Length = 204

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 57.8 bits (141), Expect = 9e-10
 Identities = 15/52 (28%), Positives = 31/52 (59%)

Query: 100 MLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWF 151
           +++G+L   SG  K+   DI+ +   ++R +G  P+  +L++ LTV E++  
Sbjct: 45  IILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKL 96

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 1/132 (0%)

Query: 382 ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 441
           AL   +T  +++ F  ++R +P   ++  V E      + H  DR+ + LSGG +++++ 
Sbjct: 82  ALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVAL 141

Query: 442 AIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKL 500
             A++    +  +DEP S +D   R  +   ++R     G   I  +H+  E   +  ++
Sbjct: 142 GRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRI 201

Query: 501 TIMVNGQFTCLG 512
            +M +GQ   +G
Sbjct: 202 AVMNDGQIQQIG 213

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 58.3 bits (142), Expect = 1e-09
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 1/120 (0%)

Query: 373 YIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLS 432
           +IG+  Q   L   LT  E++E    +  +P         E L +  LG   +     LS
Sbjct: 83  HIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELS 142

Query: 433 GGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVILTSHNME 491
           GG +++++ A AL  +  +I  DEPT  +D    + +   +       G  +++ +H+ E
Sbjct: 143 GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE 202

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 2/99 (2%)

Query: 410 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR-RF 468
                L      H +DR   +LS G +R++  A AL+ +  L+ LDEP  G+D  AR + 
Sbjct: 151 AAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQL 210

Query: 469 LWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNG 506
           L    E A S     ++  +H+ EE     T   ++  G
Sbjct: 211 LNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEG 249

Length = 257

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 59.3 bits (143), Expect = 1e-09
 Identities = 31/103 (30%), Positives = 58/103 (56%)

Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
           V+E+L      H+  + ++ LS G K++++ A AL+     + LDEPT+G+DP  R  + 
Sbjct: 117 VDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMI 176

Query: 471 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 513
             I R V++G  VI++SH+++    +   + ++  GQ    G+
Sbjct: 177 AIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGA 219

Length = 271

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 100 MLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP 159
           M++G+L  + G        +      I+  +G  P+   L+ K+TVE+ + + ++LK +P
Sbjct: 47  MILGLLEPTEGEITWNGGPLSQ---EIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMP 103

Query: 160 KDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
           K   Q ++   +  L I  K+T     LS G Q+K+
Sbjct: 104 KAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKI 139

Length = 300

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 60.0 bits (146), Expect = 2e-09
 Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 4/80 (5%)

Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVILTS 487
           R LSGG +R+L+ A ALL + PL  LDEPT G+DP   R+ L    E A  EG+ +++ +
Sbjct: 473 RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVT 530

Query: 488 HNMEECEALCTKLTIMVNGQ 507
           H +   E    ++ ++ NG+
Sbjct: 531 HRLRGLER-MDRIIVLDNGK 549

Length = 573

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 9/116 (7%)

Query: 373 YIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLS 432
           Y+G+ P    +   L+  E+L F+    +   V       E+L +  L  + DR V  LS
Sbjct: 77  YLGHAP---GIKTTLSVLENLRFWHADHSDEQVE------EALARVGLNGFEDRPVAQLS 127

Query: 433 GGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
            G +R+++ A  LL   PL  LDEPT+ +D          +    + G  V+LT+H
Sbjct: 128 AGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 60.2 bits (146), Expect = 2e-09
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 9/79 (11%)

Query: 422 HYSDREVRTLSGGNKRKLSTAIAL--------LGNTPLIFLDEPTSGMDPGARRFLWTCI 473
               R ++TLSGG +   S A+ L             L+FLDEP   +D      L   +
Sbjct: 807 GGEVRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEIL 866

Query: 474 ERAVSEGRCVILTSHNMEE 492
           E  +S+GR +I+ SH +EE
Sbjct: 867 EELLSDGRQIIIISH-VEE 884

Length = 908

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 58.9 bits (142), Expect = 3e-09
 Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 2/151 (1%)

Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV 428
           P K  +    Q  AL   L   +++ F  R + +P   +   V ++L    LG  +    
Sbjct: 76  PHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP 135

Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE--GRCVILT 486
             LSGG +++++ A A+     ++ LDEP S +D   R  +   I     E     ++  
Sbjct: 136 AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCV 195

Query: 487 SHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
           +H+ ++   L  K  IM +G+    G    L
Sbjct: 196 THDQDDALTLADKAGIMKDGRLAAHGEPQAL 226

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 15/122 (12%)

Query: 244 MNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLI 303
           M+ +  QM+   ++K      +A+  + AM+      ++LDEPT+G+DP S+R +  LL 
Sbjct: 139 MSQSPFQMSGGQMRK------IAIVSILAMN---PDIIVLDEPTAGLDPQSKRQVMRLLK 189

Query: 304 KVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL--QCCGSSVFLKNSFARGYYL 361
            +     +   +T+IL +H M+E     D + ++  G +  Q     +F        +++
Sbjct: 190 SL----QTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKLADWHI 245

Query: 362 SL 363
            L
Sbjct: 246 GL 247

Length = 286

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 1/104 (0%)

Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
           V+ +L+   L    DR    LSGG K++++ A  +     ++ LDEPT+G+DP   + L 
Sbjct: 118 VSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELI 177

Query: 471 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 513
             +       G  VI ++H ++    +   + +M  G+    G+
Sbjct: 178 DFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGT 221

Length = 277

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 57.1 bits (139), Expect = 3e-09
 Identities = 34/157 (21%), Positives = 63/157 (40%), Gaps = 4/157 (2%)

Query: 337 IAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFY 396
           +  G  +     V +         LS    +  ++  IG+  Q   L   LT  E++E  
Sbjct: 50  LLGGLDKPTSGEVLINGK--DLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELP 107

Query: 397 SRVRNLPSVLLNTIVNESLNKFALGHYSDRE-VRTLSGGNKRKLSTAIALLGNTPLIFLD 455
             +    +        E L    L     ++    LSGG +++++ A AL+ N  +I  D
Sbjct: 108 LLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILAD 167

Query: 456 EPTSGMDPGARRFLWTCI-ERAVSEGRCVILTSHNME 491
           EPT  +D    + +   + E     G+ +I+ +H+ E
Sbjct: 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE 204

Length = 226

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 3/101 (2%)

Query: 415 LNKFALGH-YSDREVRTLSGGNKRKLSTA-IALLGNTPLIFLDEPTSGMDPGARRFLWTC 472
           LNK  L   Y +R    LSGG KR+++ A I  +    LIF DEPT+G+DP     +   
Sbjct: 160 LNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIF-DEPTAGLDPKGEHEMMQL 218

Query: 473 IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 513
           I  A +  + V + +H ME    +  ++ +M  G+    G+
Sbjct: 219 ILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGT 259

Length = 320

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 57.9 bits (140), Expect = 5e-09
 Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 1/147 (0%)

Query: 368 APQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDRE 427
            P   +I    Q  AL   +T  E++ F  ++R +P   +   V E+L    L  ++DR+
Sbjct: 38  PPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRK 97

Query: 428 VRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILT 486
              LSGG +++++ A AL+    ++ LDEP S +D   R  +   ++    + G   +  
Sbjct: 98  PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV 157

Query: 487 SHNMEECEALCTKLTIMVNGQFTCLGS 513
           +H+ EE   +  ++ IM  G+   +G+
Sbjct: 158 THDQEEAMTMSDRIAIMRKGKIAQIGT 184

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 57.3 bits (139), Expect = 6e-09
 Identities = 53/220 (24%), Positives = 91/220 (41%), Gaps = 8/220 (3%)

Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFAL--GHYSDREVRTL 431
           IGY  Q   L   LT  E++    ++       +    +E L+   L    Y+DR    L
Sbjct: 77  IGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHEL 136

Query: 432 SGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNM 490
           SGG ++++  A AL  + P++ +DEP   +DP  R+ L   I+    E G+ ++  +H++
Sbjct: 137 SGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI 196

Query: 491 EECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSADAQTYLSLNLPVA 550
           +E   L  ++ +M  G+     +   + +     +   V    G S      LSL + VA
Sbjct: 197 DEALKLADRIAVMDAGEIVQYDTPDEILANPANDF---VEDFFGESERGLRLLSL-VSVA 252

Query: 551 DLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVD 590
           D V          +     D  AL   L   +     +VD
Sbjct: 253 DAVRRGEPADGEPLLEGFVDRDALSDFLARGR-SVLPVVD 291

Length = 309

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 56.0 bits (135), Expect = 7e-09
 Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 7/158 (4%)

Query: 367 SAPQKSYIGYCPQFDALN-DRLTPREHLEFYSRVRNL-----PSVLLNTIVNESLNKFAL 420
                 +IGY PQ      D      H     R  ++     P V     V ++L +  L
Sbjct: 44  PGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGL 103

Query: 421 GHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEG 480
              +DR V  LSGG ++++  A AL     ++ LDEP +G+D   +  L          G
Sbjct: 104 TELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAG 163

Query: 481 RCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 518
             +++T+H++ +  A C ++ +++NG+    G+   L+
Sbjct: 164 TAILMTTHDLAQAMATCDRV-VLLNGRVIADGTPQQLQ 200

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 55.7 bits (135), Expect = 8e-09
 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 5/62 (8%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           +ILDEPT+G+DP   + + EL++     S    G TV++++H + E   + DRI II  G
Sbjct: 148 LILDEPTNGLDPDGIKELRELIL-----SLRDQGITVLISSHLLSEIQKVADRIGIINKG 202

Query: 341 KL 342
           KL
Sbjct: 203 KL 204

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 57.6 bits (140), Expect = 9e-09
 Identities = 59/212 (27%), Positives = 82/212 (38%), Gaps = 38/212 (17%)

Query: 309 SHSLSGRTVI----LTTHYMDEADLL---------GDRIAIIA---AGKLQCCGSSVFLK 352
                G+ V+    ++  Y     LL         GDRIAI+    AGK      S  LK
Sbjct: 313 PGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGK------STLLK 366

Query: 353 NSFARGYYLSLDMKSAPQKSYIGYCPQ-FDALNDRLTPREHLEFYSRVRNLPSVLLNTIV 411
                   LS  +K       IGY  Q  D L+   T  E L                 V
Sbjct: 367 LLAGELGPLSGTVKVGETVK-IGYFDQHRDELDPDKTVLEEL------SEGFPDGDEQEV 419

Query: 412 NESLNKFAL-GHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
              L +F   G   ++ V  LSGG K +L  A  LL    L+ LDEPT+ +D  +   L 
Sbjct: 420 RAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEAL- 478

Query: 471 TCIERAVSE--GRCVILTSHNMEECEALCTKL 500
              E A+ +  G  V+L SH+    + + T++
Sbjct: 479 ---EEALLDFEG-TVLLVSHDRYFLDRVATRI 506

Length = 530

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 7/148 (4%)

Query: 368 APQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDRE 427
            P+K  IGY  Q DA   RL P  H      +R      +    ++ +    + H  DR 
Sbjct: 72  PPEKRRIGYVFQ-DA---RLFP--HYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRY 125

Query: 428 VRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL-T 486
             TLSGG K++++   ALL    L+ +DEP + +D   +R +   +ER   E    IL  
Sbjct: 126 PGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYV 185

Query: 487 SHNMEECEALCTKLTIMVNGQFTCLGSA 514
           SH+++E   L  ++ ++ NG+    G  
Sbjct: 186 SHSLDEVLRLADRVVVLENGKVKASGPL 213

Length = 352

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 55.6 bits (135), Expect = 1e-08
 Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 6/142 (4%)

Query: 372 SYIGYCPQ--FDALNDRLTPREHLE--FYSRVRNLPSVLLNTIVNESLNKFALG-HYSDR 426
             I    Q    +LN R+T  E +        +          V   L    L     +R
Sbjct: 82  KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNR 141

Query: 427 EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVIL 485
               LSGG +++++ A AL  N  L+  DEPTS +D   +  +   +++   E G  ++ 
Sbjct: 142 YPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLF 201

Query: 486 TSHNMEECEALCTKLTIMVNGQ 507
            +H++     +  ++ +M  G+
Sbjct: 202 ITHDLGVVAKIADRVAVMYAGK 223

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 57.5 bits (140), Expect = 1e-08
 Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 8/105 (7%)

Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
           R LSGG +R+L  A ALL + PL+ LDEPT G+D    R +   +    ++ + V++ +H
Sbjct: 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL-AEHAQNKTVLMITH 532

Query: 489 N---MEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVR 530
               +E+ + +C    +M NGQ    G+   L ++ G+ Y +K R
Sbjct: 533 RLTGLEQFDRIC----VMDNGQIIEQGTHQELLAQQGRYYQLKQR 573

Length = 574

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 9/127 (7%)

Query: 407 LNTIVNESLNKFAL----GHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
           L+ IV ESL K AL        ++    LSGG +++L  A AL     +I LDEPTS +D
Sbjct: 119 LDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALD 178

Query: 463 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL----K 518
           P A + +   +E  +SE   +++ +HN+ +   +   +  M  G+    G    +    K
Sbjct: 179 PIATQRIEKLLEE-LSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERPK 237

Query: 519 SKYGQGY 525
           +K  + Y
Sbjct: 238 NKLTEEY 244

Length = 250

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 3/106 (2%)

Query: 411 VNESLNKFALGH--YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRF 468
           V  ++N   L +  Y D+    LSGG KR+++ A  +     ++ LDEPT+G+DP  R  
Sbjct: 123 VKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDE 182

Query: 469 LWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 513
           +   I+    E    +IL SH+ME+   L  ++ +M  G+    G+
Sbjct: 183 ILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228

Length = 287

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 5/94 (5%)

Query: 423 YSDREVRTLSGGNKRKLSTA--IALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE- 479
           Y  R    LSGG KR+++ A  IA+ GNT  + LDEPT G+DP          ER   E 
Sbjct: 143 YVKRSPFELSGGQKRRVALAGIIAMDGNT--LVLDEPTGGLDPKGEEDFINLFERLNKEY 200

Query: 480 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 513
            + +I+ +HNM++   +  ++ +M  G+   +GS
Sbjct: 201 KKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234

Length = 289

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII 337
            S ++LDEPTSG+D  +RR   + + ++        GR VI ++H M E + L DR+ ++
Sbjct: 152 PSILVLDEPTSGLDIRTRRKFHDFIKQL-----KNEGRAVIFSSHIMQEVEALCDRVIVL 206

Query: 338 AAGKLQCCGS 347
             G++   GS
Sbjct: 207 HKGEVVLEGS 216

Length = 245

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 30/99 (30%), Positives = 58/99 (58%), Gaps = 4/99 (4%)

Query: 100 MLMGMLPVSSGTAKIYDHDIRTDMTTIRRS-LGVC--PQYNALFDKLTVEEHMWFYSQLK 156
           M++G++   SG   +   DI T +   +R+ LG+   PQ  ++F KLTVEE++    +++
Sbjct: 45  MIVGLVKPDSGKILLDGQDI-TKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR 103

Query: 157 QVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
            + K   + ++  ++ +  I H R S A++LSGG +R++
Sbjct: 104 GLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRV 142

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 54.4 bits (132), Expect = 3e-08
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           ++ DEPT+G+DP +   I +L+  +        G T I+ TH +D A  + DRIA++  G
Sbjct: 158 LLYDEPTAGLDPIASGVIDDLIRSL----KKELGLTSIMVTHDLDTAFAIADRIAVLYDG 213

Query: 341 KLQCCGSSVFLKNS 354
           K+   G+   L+ S
Sbjct: 214 KIVAEGTPEELRAS 227

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVILTSHN 489
           +SGG  RK++    L  N  +I LDEPT+G+DP ++R +   ++     E + +IL SH+
Sbjct: 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD 205

Query: 490 MEECEALCTKLTIMVNGQ 507
           M E      ++ +M  G 
Sbjct: 206 MNEVARYADEVIVMKEGS 223

Length = 286

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 53.5 bits (130), Expect = 3e-08
 Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
           LSGG +++++ A ALL + P++ LDE TS +DP     +   + RA+++G+ VI+ +H +
Sbjct: 97  LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL-RALAKGKTVIVIAHRL 155

Query: 491 E 491
            
Sbjct: 156 S 156

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 7/83 (8%)

Query: 265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYM 324
           VA+  + AM       ++LDEPT+G+DP  R+ + E+    +Y  H   G T +L TH M
Sbjct: 154 VAIAGVLAME---PEVLVLDEPTAGLDPKGRKEMMEM----FYKLHKEKGLTTVLVTHSM 206

Query: 325 DEADLLGDRIAIIAAGKLQCCGS 347
           ++A    D+I ++  G +   G+
Sbjct: 207 EDAARYADQIVVMHKGTVFLQGT 229

Length = 290

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 54.0 bits (131), Expect = 3e-08
 Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
            GY  Q DAL   LT  +++     ++ +P         E L    L  + +     LSG
Sbjct: 75  RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSG 134

Query: 434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE 492
           G +++++ A AL  +  ++ LDEP S +D   R  L   +     E G+ V+L +H+++E
Sbjct: 135 GMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDE 194

Query: 493 CEALCTKLTIM 503
              L  ++ ++
Sbjct: 195 AVFLADRVVVL 205

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 423 YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GR 481
           Y+ R+V+ LSGG  +++S A  L  N  ++ LDEPTS +DP +   +   I +  ++   
Sbjct: 124 YATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNL 183

Query: 482 CVILTSHNMEE 492
            VI  +HNME+
Sbjct: 184 TVIWITHNMEQ 194

Length = 241

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 53.7 bits (130), Expect = 4e-08
 Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 6/66 (9%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           +I+DEPT+G+DP  R     LL ++         R VIL+TH +++ + L +++A++  G
Sbjct: 152 LIVDEPTAGLDPEERIRFRNLLSELG------EDRIVILSTHIVEDVESLCNQVAVLNKG 205

Query: 341 KLQCCG 346
           KL   G
Sbjct: 206 KLVFEG 211

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 5/120 (4%)

Query: 403 PSVLLN----TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPT 458
           P + LN      V  +  +  L  +  R    LSGG +++++ A  L+   P++ LDEP 
Sbjct: 98  PGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPF 157

Query: 459 SGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
           S +DP  R  +   + +   E    +++ +H+ E+   +  ++  + NG+    GS   L
Sbjct: 158 SALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQEL 217

Length = 231

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
           ++DE  S +DP  RR + + L+++     +   +T++  TH +DEA  LGDRIAI+  G+
Sbjct: 183 LMDEAFSALDPLIRREMQDELLRL----QAELQKTIVFITHDLDEALRLGDRIAIMKDGR 238

Query: 342 LQCCG 346
           L   G
Sbjct: 239 LVQVG 243

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 53.4 bits (129), Expect = 5e-08
 Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 5/61 (8%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           +ILDEP SG+DP +   + +++ +   A    +G+TVIL+TH M+  + L DR+ ++  G
Sbjct: 150 LILDEPFSGLDPVNVELLKDVIRE--LAR---AGKTVILSTHQMELVEELCDRVLLLNKG 204

Query: 341 K 341
           +
Sbjct: 205 R 205

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 2/81 (2%)

Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
           R  SGG +++L+ A  LL + P++ LDEPT G+DP   R L + I   V + + +I  +H
Sbjct: 97  RRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-VLKDKTLIWITH 155

Query: 489 NMEECEALCTKLTIMVNGQFT 509
           ++   E +  K+  + NG+  
Sbjct: 156 HLTGIEHM-DKILFLENGKII 175

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 54.9 bits (132), Expect = 5e-08
 Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 5/143 (3%)

Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
           IG   Q  AL   +T  ++      +   P         E L    L  Y  R    LSG
Sbjct: 73  IGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSG 132

Query: 434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFL---WTCIERAVSEGRCVILTSHNM 490
           G ++++  A AL     ++ +DE  S +DP  R  +      ++  +   + ++  +H++
Sbjct: 133 GMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL--QKTIVFITHDL 190

Query: 491 EECEALCTKLTIMVNGQFTCLGS 513
           +E   +  ++ IM  G+   +G+
Sbjct: 191 DEAIRIGDRIVIMKAGEIVQVGT 213

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 53.8 bits (130), Expect = 6e-08
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL-TSHN 489
           LSGG +++++ A AL+    L+ LDEPTS +D   +  +   +     E     L  SH+
Sbjct: 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHD 201

Query: 490 MEECEALCTKLTIMVNGQFTCLGSATHLKS 519
           +   E +C ++ +M NGQ   +G    L S
Sbjct: 202 LALVEHMCDRIAVMDNGQIVEIGPTEELLS 231

Length = 252

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 1/118 (0%)

Query: 391 EHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP 450
           E++ F   V+ +P         E+L    L  Y+D+    LSGG ++++  A AL  +  
Sbjct: 125 ENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPD 184

Query: 451 LIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 507
           ++ +DE  S +DP  R  +   +    ++  + ++  +H+++E   +  ++ IM +G+
Sbjct: 185 ILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGE 242

Length = 386

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 54.5 bits (131), Expect = 7e-08
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 18/107 (16%)

Query: 249 KQMALETLKKAGTSILV-------------AVTVLFAMSFVPASTVILDEPTSGVDPYSR 295
           K+ ALE LK  G                   V +  A++  P   +++DE  S +DP  R
Sbjct: 107 KEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEP-DILLMDEAFSALDPLIR 165

Query: 296 RSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL 342
            S+ + L K+     +   +T++  TH +DEA  +GDRI I+ AG++
Sbjct: 166 DSMQDELKKL----QATLQKTIVFITHDLDEAIRIGDRIVIMKAGEI 208

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 53.5 bits (129), Expect = 8e-08
 Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 400 RNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTS 459
           + +P   +  I+++   K  +  Y D+E + LSGG K++++ A  L  N  +I  DE TS
Sbjct: 112 KKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTS 171

Query: 460 GMDPGARRFLWTCIERAVSEG-RCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATH-L 517
            +DP  +R +   +        + +I  +H+M+E   L  K+ +   G+    G     L
Sbjct: 172 MLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA-ILADKVIVFSEGKLIAQGKPKEIL 230

Query: 518 KSK 520
            +K
Sbjct: 231 NNK 233

Length = 271

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 54.9 bits (133), Expect = 8e-08
 Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 6/81 (7%)

Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIER--AVSEGRCVILT 486
           R+LSGG ++ ++ A ALL + P++ LDEPTS MD  +        +R      G+ ++L 
Sbjct: 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEE---RFKDRLKRWLAGKTLVLV 656

Query: 487 SHNMEECEALCTKLTIMVNGQ 507
           +H     + L  ++ +M NG+
Sbjct: 657 THRTSLLD-LVDRIIVMDNGR 676

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 53.2 bits (128), Expect = 9e-08
 Identities = 22/97 (22%), Positives = 44/97 (45%)

Query: 100 MLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP 159
           M+  +L   SG   I   D   D + +RR +GV      L+ +LT  E++ ++++L  + 
Sbjct: 47  MIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLS 106

Query: 160 KDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD 196
           +   +  I+ +   L +           S GM++K+ 
Sbjct: 107 RKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVA 143

Length = 245

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 1/98 (1%)

Query: 421 GHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE- 479
             ++DR    LSGG ++++  A AL  + PL+ +DEP   +DP  R  L    +R   E 
Sbjct: 126 AEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQEL 185

Query: 480 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
           G+ ++  +H+++E   L  ++ IM NG+   +G+   +
Sbjct: 186 GKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 18/120 (15%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
           LGPSG   G  TL L      M+ G+   +SG   I   D+ TD+   +R + +  Q  A
Sbjct: 35  LGPSGC--GKSTL-LR-----MIAGLEEPTSGEILIDGRDV-TDLPPEKRGIAMVFQNYA 85

Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGD----LGIPHKRTSLANTLSGG-MQR 193
           L+  +TV E++ F  +L+ VPK     EI   + +    LG+ H        LSGG  QR
Sbjct: 86  LYPHMTVYENIAFGLKLRGVPKA----EIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQR 141

Length = 338

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 2/98 (2%)

Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
           VNE+L    +  + +RE   LSGG K++++ A A+     +I LDE TS +DP  R  L 
Sbjct: 121 VNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI 180

Query: 471 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 507
             I+    +    VI  +H+++E  AL  ++ +M NGQ
Sbjct: 181 KTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQ 217

Length = 279

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 410 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFL 469
            V+E+L +  +   +D E   LSGG K++++ A  L  N  +I LDE TS +DP AR+ L
Sbjct: 122 RVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNL 181

Query: 470 WTCIERAVSEGRCVILT-SHNMEE 492
              + +  SE    I++ +H++ E
Sbjct: 182 LDLVRKVKSEHNITIISITHDLSE 205

Length = 269

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 54.1 bits (130), Expect = 1e-07
 Identities = 27/104 (25%), Positives = 55/104 (52%)

Query: 409 TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRF 468
             V  ++ +  +  ++DR V +LSGG ++++  A AL   TP++ LDEPT+ +D   +  
Sbjct: 118 AAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVR 177

Query: 469 LWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 512
               + R V +G+  +   H+++     C +L ++ +G+    G
Sbjct: 178 TLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221

Length = 402

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 54.5 bits (132), Expect = 1e-07
 Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 1/99 (1%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 489
           LSGG ++++  A+AL     L+  DEPT+ +D   +  +   ++    E G  V+  +H+
Sbjct: 155 LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHD 214

Query: 490 MEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVK 528
           +     L  ++ +M  G+    G    + S     Y+  
Sbjct: 215 LGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTRG 253

Length = 539

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 1/109 (0%)

Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
           ++E L    LG   DR    LS G K+ L   + L  +  L+ LDEP +GM         
Sbjct: 128 IDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA 187

Query: 471 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 519
             + ++++    +++  H+M     +  K+T++  G     GS   +++
Sbjct: 188 ELL-KSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQN 235

Length = 249

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 53.2 bits (127), Expect = 1e-07
 Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 10/101 (9%)

Query: 265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYM 324
           VA+  + AM       ++LDEPT+G+DP +R      +++++ + H  SG+TV+L TH M
Sbjct: 153 VAIAGILAME---PEVLVLDEPTAGLDPKARIE----MMQLFESIHQ-SGQTVVLVTHLM 204

Query: 325 DEADLLGDRIAIIAAGKLQCCG--SSVFLKNSFARGYYLSL 363
           D+     D + ++  G +  CG  S VF +  F + + L +
Sbjct: 205 DDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGV 245

Length = 288

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 10/93 (10%)

Query: 265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYM 324
           VA+  + AM       ++LDEPT+G+DP  R+ +  L  K++      SG T++L TH M
Sbjct: 154 VAIAGILAME---PKILVLDEPTAGLDPKGRKELMTLFKKLH-----QSGMTIVLVTHLM 205

Query: 325 DEADLLGDRIAIIAAGKLQCCG--SSVFLKNSF 355
           D+     D + ++  GKL   G    +F    F
Sbjct: 206 DDVANYADFVYVLEKGKLVLSGKPKDIFQDVDF 238

Length = 280

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 12/101 (11%)

Query: 415 LNKFALGHYS--DREV----RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRF 468
           +  F   H +  D ++    R LSGG ++ ++ A ALL + P++ LDEPTS MD  +   
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178

Query: 469 LWTCIER--AVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
           L    ER   +   + +I+ +H     + L  ++ +M +G+
Sbjct: 179 L---KERLRQLLGDKTLIIITHRPSLLD-LVDRIIVMDSGR 215

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 5/62 (8%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           ++LDEPT+G+D  + R++ E  I+   A     G+ ++ +TH M E + L DR+ ++  G
Sbjct: 158 LLLDEPTTGLDVMATRALREF-IRQLRAL----GKCILFSTHIMQEVERLCDRVVVLHRG 212

Query: 341 KL 342
           ++
Sbjct: 213 RV 214

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 5/77 (6%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           +ILDEP SG+DP +     ELL    +      G T+I ++H M+  + L DR+ ++  G
Sbjct: 152 LILDEPFSGLDPVNV----ELLKDAIFELKE-EGATIIFSSHRMEHVEELCDRLLMLKKG 206

Query: 341 KLQCCGSSVFLKNSFAR 357
           +    G+   ++ SF +
Sbjct: 207 QTVLYGTVEDIRRSFGK 223

Length = 300

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL 342
           LDEP S +D   R  + E L ++        G T I  TH  +EA  L DRIA++  G++
Sbjct: 154 LDEPLSALDAKLREELREELKEL----QRELGITTIYVTHDQEEALALADRIAVMNEGRI 209

Query: 343 QCCG 346
              G
Sbjct: 210 VQVG 213

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 50.9 bits (123), Expect = 2e-07
 Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 5/79 (6%)

Query: 269 VLFAMSFVPASTVI-LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA 327
           VL A +      ++ LDEPTS +D   +  + ELL ++   +    G+TV++  H ++ A
Sbjct: 106 VLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRL---ARE-RGKTVVMVLHDLNLA 161

Query: 328 DLLGDRIAIIAAGKLQCCG 346
               DR+ ++  G++   G
Sbjct: 162 ARYADRVILLKDGRIVAQG 180

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           ++LDEP S +D  ++  + E L K+        G TV+  TH  +EA  L D++AI+  G
Sbjct: 151 LLLDEPFSALDVRTKEKLREELKKI----RKEFGVTVLHVTHDFEEAWALADKVAIMLNG 206

Query: 341 KL 342
           KL
Sbjct: 207 KL 208

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 5/61 (8%)

Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
           ILDEPT+G+DP   + + EL+      S    G TVIL++H + E   L D I II+ G 
Sbjct: 147 ILDEPTNGLDPIGIQELRELI-----RSFPEQGITVILSSHILSEVQQLADHIGIISEGV 201

Query: 342 L 342
           L
Sbjct: 202 L 202

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
            LDEPT G+D  ++ +I   L K Y       G TV+LT+HYM + + L  R+ +I  G+
Sbjct: 176 FLDEPTIGLDVVAQENIRNFL-KEYNRER---GTTVLLTSHYMKDIEALARRVLVIDKGR 231

Query: 342 LQ 343
           L 
Sbjct: 232 LL 233

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 9/88 (10%)

Query: 265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYM 324
           VA+  + AM       +ILDEPT+G+DP  R  I   + ++    H     T+IL +H M
Sbjct: 153 VAIAGVVAME---PKILILDEPTAGLDPKGRDEILNKIKEL----HKEYNMTIILVSHSM 205

Query: 325 DEADLLGDRIAIIAAGKLQCCG--SSVF 350
           ++   L DRI ++  GK +  G    VF
Sbjct: 206 EDVAKLADRIIVMNKGKCELQGTPREVF 233

Length = 287

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 26/88 (29%), Positives = 45/88 (51%)

Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484
           D +V  LS  +K+ L  A  L+ +  +I +DEPTS +      +L+  + +   EG  ++
Sbjct: 140 DEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIV 199

Query: 485 LTSHNMEECEALCTKLTIMVNGQFTCLG 512
             SH + E   +C + T+M +G   C G
Sbjct: 200 YISHKLAEIRRICDRYTVMKDGSSVCSG 227

Length = 510

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 54.1 bits (130), Expect = 2e-07
 Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 10/123 (8%)

Query: 375  GYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLN----TIVNESLNKFALGHYSDREV-- 428
            GYC Q D  + ++T RE L  YS    LP  +        V+E +    L +  D  V  
Sbjct: 956  GYCEQNDIHSPQVTVRESL-IYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGL 1014

Query: 429  ---RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 485
                 LS   +++L+ A+ L+ N  +IF+DEPTSG+D  A   +   +   V  GR V+ 
Sbjct: 1015 PGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1074

Query: 486  TSH 488
            T H
Sbjct: 1075 TIH 1077

Length = 1470

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 34/166 (20%), Positives = 68/166 (40%), Gaps = 12/166 (7%)

Query: 365 MKSAPQKSY---IGYCPQFDALNDRLTPREHLEFYSRVR--------NLPSVLLNTIVNE 413
           +K    +     IG   Q   L  RL+  E++                L S        +
Sbjct: 71  LKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALD 130

Query: 414 SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP-GARRFLWTC 472
           +L +  +   + +   TLSGG +++++ A AL+    +I  DEP + +DP  A++ +   
Sbjct: 131 ALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDIL 190

Query: 473 IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 518
            +    +G  VI+  H ++  +    ++  +  G+    G A+ L 
Sbjct: 191 KDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELT 236

Length = 258

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 1/106 (0%)

Query: 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP-GARRFLWT 471
           ++L +  + H++ + V TLSGG +++++ A AL+    +I  DEP + +DP  AR  + T
Sbjct: 135 QALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDT 194

Query: 472 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
             +   ++G  V++T H ++     C ++  +  G     GS+   
Sbjct: 195 LRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240

Length = 262

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 3/146 (2%)

Query: 374 IGYCPQ-FDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLS 432
           IG   Q F+ L+ R T  E++ F   +  +P   +   V E L    L   +DR    LS
Sbjct: 85  IGMIFQHFNLLSSR-TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLS 143

Query: 433 GGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNME 491
           GG K++++ A AL  N  ++  DE TS +DP   + +   ++    E G  ++L +H ME
Sbjct: 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME 203

Query: 492 ECEALCTKLTIMVNGQFTCLGSATHL 517
             + +C ++ ++  G+    G+ + +
Sbjct: 204 VVKRICDRVAVLDQGRLVEEGTVSEV 229

Length = 339

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 5/90 (5%)

Query: 407 LNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
           L+TIV +SL   AL     DR      +LSGG +++L  A  L  N  +I +DEP S +D
Sbjct: 122 LDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALD 181

Query: 463 PGARRFLWTCIERAVSEGRCVILTSHNMEE 492
           P A   +   IE  + +   VI+ +HNM++
Sbjct: 182 PIATAKIEDLIED-LKKEYTVIIVTHNMQQ 210

Length = 253

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 51.8 bits (125), Expect = 3e-07
 Identities = 30/101 (29%), Positives = 57/101 (56%), Gaps = 6/101 (5%)

Query: 100 MLMGMLPVSSGTAKIYDHDIRTDMTTIRRS---LGVCPQYNALFDKLTVEEHMWFYSQLK 156
           M++G++   SG   + D DI T +   +R+   +G  PQ  ++F KLTVE+++    +++
Sbjct: 49  MIVGLVRPDSGKILLDDEDI-TKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIR 107

Query: 157 QVPKDLAQ--LEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
           +     A+   E+  ++ +  I H R S A +LSGG +R++
Sbjct: 108 EKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRV 148

Length = 243

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 50.9 bits (123), Expect = 3e-07
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA 339
           LDEP S +D  +R  + E L+ ++  +    G+TV+L TH +DEA  L DR+ +++A
Sbjct: 155 LDEPFSALDALTREQLQEELLDIWRET----GKTVLLVTHDIDEAVFLADRVVVLSA 207

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTC 472
           E+L    L  +  +    LSGG ++++  A AL  +  ++ +DE  S +DP  RR +   
Sbjct: 143 EALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDE 202

Query: 473 IERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 507
           + R  +E  + ++  +H+++E   L  ++ IM +G+
Sbjct: 203 LLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGR 238

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 23/94 (24%), Positives = 50/94 (53%)

Query: 422 HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR 481
           H  ++ +  LSGGN++K+  +  L     +I  DEPT G+D GA+  ++  + +   +G+
Sbjct: 401 HSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGK 460

Query: 482 CVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 515
            +++ S  + E   +C ++ +   G+ T + +  
Sbjct: 461 VILMVSSELPEIITVCDRIAVFCEGRLTQILTNR 494

Length = 510

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 28/104 (26%), Positives = 56/104 (53%)

Query: 410 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFL 469
            VN+++ +  + H +DR +  LSGG +++   A+ L  +TP++ LDEPT+ +D   +  L
Sbjct: 118 RVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVEL 177

Query: 470 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 513
              +    ++G+ V+   H++ +    C  L ++ NG     G+
Sbjct: 178 MRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221

Length = 255

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 53.1 bits (128), Expect = 3e-07
 Identities = 27/83 (32%), Positives = 50/83 (60%)

Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484
           ++ +  LSGGN++K++ A  L+    ++ LDEPT G+D GA++ ++  I +  +EG  +I
Sbjct: 390 EQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSII 449

Query: 485 LTSHNMEECEALCTKLTIMVNGQ 507
           L S  M E   +  ++ +M  G+
Sbjct: 450 LVSSEMPEVLGMSDRILVMHEGR 472

Length = 501

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 53.0 bits (128), Expect = 3e-07
 Identities = 29/84 (34%), Positives = 45/84 (53%)

Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484
           D  ++ LS G ++ +  A AL  N  +I  DEPTS +       L+  I    +EGR ++
Sbjct: 135 DTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVIL 194

Query: 485 LTSHNMEECEALCTKLTIMVNGQF 508
             SH MEE  ALC  +T+  +G++
Sbjct: 195 YVSHRMEEIFALCDAITVFKDGRY 218

Length = 501

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 21/122 (17%)

Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
           I Y P+   +ND+    E +E     ++L    L   V++ L+K ALG         LSG
Sbjct: 140 IAYGPRLHGINDKKQLEEIVE-----KSLRKAALWDEVSDRLDKNALG---------LSG 185

Query: 434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR---CVILTSHNM 490
           G +++L  A  L     ++ LDEPTS +DP A       IE  + E R    +++ +HNM
Sbjct: 186 GQQQRLCVARTLAVEPEILLLDEPTSALDPKAT----AKIEDLIQELRGSYTIMIVTHNM 241

Query: 491 EE 492
           ++
Sbjct: 242 QQ 243

Length = 286

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
           LSGG +++L  A AL GN  ++ LDEP S +D    R L   I    + G   I+ +H  
Sbjct: 97  LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156

Query: 491 EECEALCTKLTIMVNGQ 507
           E   +   ++ ++ +G+
Sbjct: 157 ETLAS-ADRILVLEDGR 172

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 24/98 (24%), Positives = 50/98 (51%), Gaps = 1/98 (1%)

Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
           +  +L +  L     R    LSGG +++++ A  L+ + P++ LDEP + +DP  R  + 
Sbjct: 109 IEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEML 168

Query: 471 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 507
             +    +E    V++ +H  E+ + L  ++  + NG+
Sbjct: 169 DLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGR 206

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 3/104 (2%)

Query: 410 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFL 469
           IV  +L +  +  +  R++  LSGG K+++  A A+     +I LDEP +G+D      +
Sbjct: 122 IVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARI 181

Query: 470 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 513
            + +     EG+ +++++HN+      C   T+MV G  T L S
Sbjct: 182 ISLLRELRDEGKTMLVSTHNLGSVTEFC-DYTVMVKG--TVLAS 222

Length = 272

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 50.6 bits (122), Expect = 4e-07
 Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 9/116 (7%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
           LGPSG   G  TL L      ++ G+    SG   I   D+ T +   RR++G+  Q  A
Sbjct: 32  LGPSGC--GKTTL-LR-----LIAGLERPDSGEILIDGRDV-TGVPPERRNIGMVFQDYA 82

Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRK 194
           LF  LTV E++ F  +L+ VPK   +  +  ++  +G+        + LSGG Q++
Sbjct: 83  LFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQR 138

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 52.7 bits (127), Expect = 4e-07
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
             LSGG +++L+ A ALL + P++ LDEPT  +D      L   +  A   GR V+L +H
Sbjct: 470 ARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDL-LAALSGRTVVLITH 528

Query: 489 N 489
           +
Sbjct: 529 H 529

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 51.5 bits (123), Expect = 4e-07
 Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 1/132 (0%)

Query: 388 TPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG 447
           T  E L F      LP + +   V+ +L +  L  Y  R  +TLSGG  + ++ A  L  
Sbjct: 94  TVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTM 153

Query: 448 NTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
               +  DE TS +DP +   +   I++   +G+ ++  +HN+EE      ++ +M  G+
Sbjct: 154 EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHD-ADRIIVMDRGK 212

Query: 508 FTCLGSATHLKS 519
               G   ++ S
Sbjct: 213 IVLEGEPENVLS 224

Length = 274

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 10/116 (8%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
           LGP+G      ++ LE      + G +   SG   +   DI T++   +R +   PQ  A
Sbjct: 31  LGPTGSG---KSVLLE-----TIAGFIKPDSGKILLNGKDI-TNLPPEKRDISYVPQNYA 81

Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGG-MQR 193
           LF  +TV +++ +  + ++V K   + ++  +   LGI H       TLSGG  QR
Sbjct: 82  LFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQR 137

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 49.7 bits (120), Expect = 6e-07
 Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 5/62 (8%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           +ILDEPT GVD  ++  I+ L+ ++     + +G+ V+L +  +DE   L DRI ++  G
Sbjct: 126 LILDEPTRGVDVGAKAEIYRLIREL-----ADAGKAVLLISSELDELLGLCDRILVMYEG 180

Query: 341 KL 342
           ++
Sbjct: 181 RI 182

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 50.6 bits (122), Expect = 6e-07
 Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 21/124 (16%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI----RTDMTTIRRSLGVCP 134
           +GPSG   G  TL      R ++ G+L   SG   I   DI      ++  +RR +G+  
Sbjct: 32  IGPSGS--GKSTL-----LRLIV-GLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLF 83

Query: 135 QYNALFDKLTVEEHMWF----YSQL-KQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSG 189
           Q  ALFD LTV E++ F    +++L ++  +++   ++   +G  G      +    LSG
Sbjct: 84  QSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKL-EAVGLRGAEDLYPA---ELSG 139

Query: 190 GMQR 193
           GM++
Sbjct: 140 GMKK 143

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 15/138 (10%)

Query: 379 QFDALNDRLTPREHLEF----YSRVRNLPSVLLNT----IVNESLNKFALGHYSDREVRT 430
           Q + +N RLT R+ + F    YS+ R      L      I+NE++    L   SDR +  
Sbjct: 82  QENHINSRLTVRDLVGFGRFPYSQGR------LTKEDRRIINEAIEYLHLEDLSDRYLDE 135

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 489
           LSGG +++   A+ L  +T  + LDEP + +D      +   + R   E G+ +++  H+
Sbjct: 136 LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHD 195

Query: 490 MEECEALCTKLTIMVNGQ 507
           +         +  + NG+
Sbjct: 196 INFASCYSDHIVALKNGK 213

Length = 252

>gnl|CDD|222036 pfam13304, AAA_21, AAA domain

 Score = 50.9 bits (121), Expect = 6e-07
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 4/111 (3%)

Query: 382 ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 441
            L+  L     L     +RN+   LL+ +V     +  L       ++ +S G KR L+ 
Sbjct: 142 LLSILLPFSFILGNLRNLRNIELKLLD-LVKRLFLESDLLRLLKLLIKGISDGTKRLLAL 200

Query: 442 AIALL---GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
            +ALL       L+ +DEP +G+ P   R L   ++    +G  +I T+H+
Sbjct: 201 LLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHS 251

Length = 256

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 49.8 bits (120), Expect = 6e-07
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTSH 488
            LSGG K+++S A A+  +  +  LD+P S +D    R ++  CI   +   +  IL +H
Sbjct: 127 NLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTH 186

Query: 489 NMEECEALCTKLTIMVNGQ 507
            ++       ++ ++ NG+
Sbjct: 187 QLQLLPH-ADQIVVLDNGR 204

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 50.2 bits (120), Expect = 7e-07
 Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 387 LTPREH--LEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA 444
           LT RE+  L     + +L       IV E +    L   +D+    LSGG K++++ A A
Sbjct: 69  LTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARA 128

Query: 445 LLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHNMEECEALCTKLTIM 503
           L     ++ LDEP   +D   R  L   + +   E R  V++ +H+++E   L  ++ ++
Sbjct: 129 LSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVML 188

Query: 504 VNG 506
            NG
Sbjct: 189 TNG 191

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 50.3 bits (121), Expect = 7e-07
 Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 17/110 (15%)

Query: 407 LNTIVNESLNKFALGHYSDREV------RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG 460
           L+  V E+L K AL      EV        LSGG +++L  A AL     ++ LDEPTS 
Sbjct: 116 LDERVEEALRKAAL----WDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171

Query: 461 MDPGARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQ 507
           +DP +       IE  ++E +    +++ +HNM++   +  +   ++NG+
Sbjct: 172 LDPISTA----KIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGR 217

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 51.8 bits (124), Expect = 7e-07
 Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 10/124 (8%)

Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVL---LNTIVNES------LNKFALGHYS 424
            G+  Q D L   LT RE L F S +R LP  L      +V ES      L K       
Sbjct: 142 TGFVTQDDILYPHLTVRETLVFCSLLR-LPKSLTKQEKILVAESVISELGLTKCENTIIG 200

Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484
           +  +R +SGG ++++S A  +L N  L+ LDEPTSG+D  A   L   +     +G+ ++
Sbjct: 201 NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIV 260

Query: 485 LTSH 488
            + H
Sbjct: 261 TSMH 264

Length = 659

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 8/118 (6%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
           LGP+G   G  TL   F   S+L  +     G   +  HD+R         LGV  Q   
Sbjct: 33  LGPNGA--GKSTL---F---SLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPT 84

Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD 196
           L   L+V +++ +++ L  + +  A+  I+ ++  LG+  +       L+GG +R+++
Sbjct: 85  LDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADDKVRELNGGHRRRVE 142

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 50.8 bits (122), Expect = 8e-07
 Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 8/115 (6%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           + LDEPT G+D  ++ +I E L K Y         TV+LTTH  D+   L DR+ +I  G
Sbjct: 178 LFLDEPTVGLDVNAQANIREFL-KEYNEER---QATVLLTTHIFDDIATLCDRVLLIDQG 233

Query: 341 KLQCCGSSVFLKNSFARGYYLSLDMK---SAPQKSYIGYCPQFDALNDRL-TPRE 391
           +L   G+   L+  F      S+++K   S  Q + +G     + LN +    RE
Sbjct: 234 QLVFDGTLAQLQEQFGPYKEFSVELKQAKSLSQLALLGDVTIEEGLNIKNDVSRE 288

Length = 325

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 50.9 bits (122), Expect = 8e-07
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
           V+ESL K  +  Y       LSGG K++++ A  L      I  DEPT+ +DP  RR + 
Sbjct: 125 VDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVV 184

Query: 471 TCIERAVSE-GRCVILTSHNMEE 492
             I+    + G  +IL +H MEE
Sbjct: 185 NTIKELNKKYGITIILITHYMEE 207

Length = 280

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 8/78 (10%)

Query: 265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYM 324
           VA+  + AM       +I DEPT+ +DP  RR +   + ++    +   G T+IL THYM
Sbjct: 153 VAIAGILAMR---PECIIFDEPTAMLDPSGRREVVNTIKEL----NKKYGITIILITHYM 205

Query: 325 DEADLLGDRIAIIAAGKL 342
           +EA +  DRI ++ +GK+
Sbjct: 206 EEA-VEADRIIVMDSGKV 222

Length = 280

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 51.5 bits (124), Expect = 9e-07
 Identities = 28/77 (36%), Positives = 45/77 (58%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
           LSGGN++K   A  LL N  ++ LDEPT G+D GA+  ++  I + V +G  +I+ S  +
Sbjct: 406 LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSEL 465

Query: 491 EECEALCTKLTIMVNGQ 507
            E   L  ++ +M  G+
Sbjct: 466 PEVLGLSDRVLVMHEGK 482

Length = 506

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 51.0 bits (122), Expect = 9e-07
 Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 401 NLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG 460
           N P   +   V E L    LG   D     LSGG K++++ A AL  N  ++  DE TS 
Sbjct: 111 NTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSA 170

Query: 461 MDPGARRFLWTC---IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
           +DP   + +      I R +  G  ++L +H M+  + +C  + ++ NG+    G+ + +
Sbjct: 171 LDPATTQSILELLKEINRRL--GLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEI 228

Query: 518 KS 519
            S
Sbjct: 229 FS 230

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 49.9 bits (120), Expect = 1e-06
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 269 VLFAMSFVPASTVI-LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA 327
           VL A +    + ++ LDEPTS +D   +  + ELL  +    +   G TV++  H ++ A
Sbjct: 147 VLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDL----NREKGLTVVMVLHDLNLA 202

Query: 328 DLLGDRIAIIAAGKL 342
               D + ++  GK+
Sbjct: 203 ARYADHLILLKDGKI 217

Length = 258

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 49.9 bits (120), Expect = 1e-06
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 8/61 (13%)

Query: 283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGR-TVILTTHYMDEADLLGDRIAIIAAGK 341
           LDEPTS +DP S   I E LI        L    T+++ TH M +A  + DR A +  G+
Sbjct: 165 LDEPTSALDPISTAKI-EELI------AELKKEYTIVIVTHNMQQAARVADRTAFLLNGR 217

Query: 342 L 342
           L
Sbjct: 218 L 218

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 6/85 (7%)

Query: 407 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP--LIFLDEPTSGMDPG 464
           L  +++  L    LG    +++ TLSGG  +++  A  L    P  L  LDEP++G+   
Sbjct: 68  LQFLIDVGLGYLTLG----QKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQ 123

Query: 465 ARRFLWTCIERAVSEGRCVILTSHN 489
               L   I+  +  G  VIL  HN
Sbjct: 124 DINQLLEVIKGLIDLGNTVILIEHN 148

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 47.8 bits (115), Expect = 1e-06
 Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSH 488
           LSGG K +L+ A  LL N  L+ LDEPT+ +D  +   L    E A+ E    VIL SH
Sbjct: 71  LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEAL----EEALKEYPGTVILVSH 125

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 25/78 (32%), Positives = 43/78 (55%)

Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
           +LSGGN++K+     LL    ++ LDEPT G+D GA+  ++  I     + + +I+ S  
Sbjct: 391 SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSE 450

Query: 490 MEECEALCTKLTIMVNGQ 507
           M E   +  ++ +M NG 
Sbjct: 451 MPELLGITDRILVMSNGL 468

Length = 491

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 51/185 (27%), Positives = 78/185 (42%), Gaps = 24/185 (12%)

Query: 345 CGSSVFLKNSFARGYYLSLDMKSAPQKSYIG---YCPQFDALNDR-------LTPREHL- 393
           CG S FL+ +  R   L   +K      Y G   Y   FD L  R        TP   L 
Sbjct: 44  CGKSTFLR-TLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLM 102

Query: 394 EFYSRVRNLPSV-------LLNTIVNESLNKFALGHYS----DREVRTLSGGNKRKLSTA 442
             Y  +   P +        L+ IV +SL K AL +      +    +LSGG +++L  A
Sbjct: 103 SIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIA 162

Query: 443 IALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTI 502
             L     +I +DEPTS +DP +   +   I   + E   +I+ +HNM++   +  +   
Sbjct: 163 RTLAIEPNVILMDEPTSALDPISTGKIEELIIN-LKESYTIIIVTHNMQQAGRISDRTAF 221

Query: 503 MVNGQ 507
            +NG 
Sbjct: 222 FLNGC 226

Length = 254

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 2/94 (2%)

Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
             LSGG  ++L+ A ALL    L+ LDEPT+ +D    + +   ++   ++ + V++ +H
Sbjct: 455 AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL-AKQKTVLVITH 513

Query: 489 NMEECEALCTKLTIMVNGQFTCLGSATHLKSKYG 522
            +E+  A   ++ ++ NG+    G+   L  K G
Sbjct: 514 RLEDA-ADADRIVVLDNGRLVEQGTHEELSEKQG 546

Length = 559

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 17/166 (10%)

Query: 331 GDRIAIIAAGKLQCCGSSVFLK-----NSFARG--YYLSLDMKSAPQKSY---IGYCPQF 380
           G+ IAI        CG S  LK      S   G   +   D+ +   ++Y   + YC Q 
Sbjct: 29  GEFIAITGPSG---CGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQT 85

Query: 381 DALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYS-DREVRTLSGGNKRKL 439
            AL    T  ++L F  ++RN           + L +FAL      + +  LSGG K+++
Sbjct: 86  PALFGD-TVEDNLIFPWQIRN--RRPDRAAALDLLARFALPDSILTKNITELSGGEKQRI 142

Query: 440 STAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 485
           +    L     ++ LDE TS +D   +R +   I R V E    +L
Sbjct: 143 ALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVL 188

Length = 223

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 5/104 (4%)

Query: 407 LNTIVNESLNKFAL----GHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
           ++  V ESL + AL        D     LSGG +++L  A A+  +  +I +DEP S +D
Sbjct: 153 IDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD 212

Query: 463 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 506
           P A   +   IE    E   VI+T HNM++   +  K  + + G
Sbjct: 213 PVATSKIEDLIEELAEEYTVVIVT-HNMQQAARISDKTAVFLTG 255

Length = 285

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 51.2 bits (122), Expect = 2e-06
 Identities = 25/65 (38%), Positives = 36/65 (55%)

Query: 12   DVTQLIRSFLPAANIHKISGSEVTYVLPQDPASMGAYVSLFESLSENRDKLGIDSYGISD 71
            ++  L+   +P A + +  G E+ ++LP       AY SLF  L E    LG+ S+GISD
Sbjct: 1207 ELMDLVYHHVPEAKLVECIGQELIFLLPNKNFKQRAYASLFRELEETLADLGLSSFGISD 1266

Query: 72   TSLEE 76
            T LEE
Sbjct: 1267 TPLEE 1271

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 20/125 (16%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI----RTDMTTIRRSLGVCP 134
           LG SG   G  TL      R +L G+L    G   I   DI      ++  IR+ +GV  
Sbjct: 40  LGGSGS--GKSTL-----LRLIL-GLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLF 91

Query: 135 QYNALFDKLTVEEHMWF----YSQL-KQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSG 189
           Q  ALF  LTV E++ F    +++L + + ++L  +++  ++G  G         + LSG
Sbjct: 92  QQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKL-ELVGLRGAAADL--YPSELSG 148

Query: 190 GMQRK 194
           GM+++
Sbjct: 149 GMRKR 153

Length = 263

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL 342
           LDEP S +D   R  +   + K+    H   G T I  TH   EA  L DRI ++  G++
Sbjct: 157 LDEPLSNLDAKLRVLMRSEIKKL----HERLGTTTIYVTHDQVEAMTLADRIVVMNDGRI 212

Query: 343 QCCGS 347
           Q  G+
Sbjct: 213 QQVGT 217

Length = 338

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 2/98 (2%)

Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP-GARRFL 469
           V E+L    +  + ++    LSGG K++++ A  L     +I LDEPTSG+DP GA + +
Sbjct: 118 VKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIM 177

Query: 470 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
               +    EG  +I+++H+++       K+ +M +G+
Sbjct: 178 KLLYDLN-KEGITIIISTHDVDLVPVYADKVYVMSDGK 214

Length = 275

>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 431 LSGGNKRKLSTAIAL----LGNTPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVIL 485
           LSGG K   + A+ L    L   PL  LDE   G+DP   +      +E  V +G  VI+
Sbjct: 78  LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLV-KGAQVIV 136

Query: 486 TSHNME 491
            +H  E
Sbjct: 137 ITHLPE 142

ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 1/108 (0%)

Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
           V E L    L   +D     LSGG K+++  A AL  N  ++  DE TS +DP   + + 
Sbjct: 121 VLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSIL 180

Query: 471 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
             +     E G  ++L +H ME  + +C ++ +M  G+    G+   +
Sbjct: 181 ALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 9/141 (6%)

Query: 387 LTPREHLEF-YSRVRNLPSVLLNTI-------VNESLNKFALGHYSDREVRTLSGGNKRK 438
           LT  E+LE    R +++ + L   +       + E L    L   +DR    LS G K+ 
Sbjct: 92  LTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQW 151

Query: 439 LSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT 498
           L   + L+ +  L+ LDEP +GM           + ++++    V++  H+ME   ++  
Sbjct: 152 LEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELL-KSLAGKHSVVVVEHDMEFVRSIAD 210

Query: 499 KLTIMVNGQFTCLGSATHLKS 519
           K+T++  G     GS   +++
Sbjct: 211 KVTVLHQGSVLAEGSLDQVQA 231

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 28/108 (25%), Positives = 54/108 (50%)

Query: 410 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFL 469
           +V+ +L +  L H +DR++ TLSGG ++++  A AL     L+ LDEPT+ +D  A+   
Sbjct: 117 VVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLET 176

Query: 470 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
              +    + G  V+   H++    + C  + ++  G+    G    +
Sbjct: 177 LALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREV 224

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 3/109 (2%)

Query: 420 LGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFL-DEPTSGMDPGARRFLWTCIERAV- 477
           L H      R LSGG K+++  A  L    P +FL DEPT  +DP   + +   +E AV 
Sbjct: 158 LSHRITHIARDLSGGEKQRVVLARQLAKE-PFLFLADEPTGTLDPQTAKLVHNALEEAVK 216

Query: 478 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYS 526
           + G  ++LTSH  E  E L  K   + NG+    G+   + + + +G S
Sbjct: 217 ASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFMEGVS 265

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 387 LTPREHL-EFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL 445
           LT +E+L E   RV  L          + L +  L  Y+DR    LSGG +++++ A AL
Sbjct: 97  LTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARAL 156

Query: 446 LGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVN 505
           +    ++  DEPT+ +DP     + + I+     G   ++ +H +E      +++  M N
Sbjct: 157 MMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMEN 216

Query: 506 GQFTCLGSATH 516
           G     G A+ 
Sbjct: 217 GHIVEQGDASC 227

Length = 242

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 13/128 (10%)

Query: 366 KSAPQKSYIGYCPQFDALNDRLTPREHLEFYS-----RVRNLPSVLLNTIVNESLNKFAL 420
               +  ++ Y      L   L+  E+L F       R + +P   L  IV        L
Sbjct: 76  TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSAL-AIV-------GL 127

Query: 421 GHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEG 480
             Y D  VR LS G K++L+ A   L   PL  LDEP + +D      +   I   +  G
Sbjct: 128 AGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGG 187

Query: 481 RCVILTSH 488
              ++T+H
Sbjct: 188 GAALVTTH 195

Length = 214

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTC 472
             L        SDR +  LSGG ++ LS  +A L    ++ LDE T+ +DP    F+   
Sbjct: 132 ARLGLGLENRLSDR-IGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMEL 190

Query: 473 IERAVSEGR-CVILTSHNMEECEALCTKLTIMVNGQ 507
             + V E +   ++ +HNME+      +L ++ +G+
Sbjct: 191 TAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGK 226

Length = 263

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
           LSGG K++++ A A+L N P++ LDE TS +D    R +   +   VS+GR  I+ +H +
Sbjct: 138 LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRD-VSKGRTTIVIAHRL 196

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-V 483
           DR V +LSGG +R+++ A ALL    L+ LDEPT+ +D  +  +L    E  +      V
Sbjct: 148 DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWL----EDYLKRYPGTV 203

Query: 484 ILTSHNMEECEALCTK 499
           I+ SH+    + + T 
Sbjct: 204 IVVSHDRYFLDNVATH 219

Length = 530

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 22/118 (18%)

Query: 410 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL------LGNTPLIFLDEPTSGMDP 463
           I  ++L    L   + R+ RTLSGG ++++  A  L      + +   +FLDEPTS +D 
Sbjct: 115 IAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDI 174

Query: 464 G--------ARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 513
                    AR+      E         +L  H++        ++ ++  G+    GS
Sbjct: 175 AHQHHTLRLARQL---AREGG---AVLAVL--HDLNLAAQYADRIVLLHQGRVIASGS 224

Length = 259

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 49.8 bits (119), Expect = 3e-06
 Identities = 27/77 (35%), Positives = 44/77 (57%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
           LSGGN++K   A  LL N  ++ LDEPT G+D GA+  ++  I +   EG  +I+ S  +
Sbjct: 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL 463

Query: 491 EECEALCTKLTIMVNGQ 507
            E   L  ++ ++  G+
Sbjct: 464 AEVLGLSDRVLVIGEGK 480

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 6/62 (9%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           +ILDEPT+G+DP     I  ++  +         +T+IL+TH M E + + DR+ II  G
Sbjct: 155 LILDEPTTGLDPNQLVEIRNVIKNIGKD------KTIILSTHIMQEVEAICDRVIIINKG 208

Query: 341 KL 342
           K+
Sbjct: 209 KI 210

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 47.9 bits (115), Expect = 4e-06
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 5/62 (8%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           ++ DEPT  +D  + + + ELL ++    +  +G T+++ TH  + A+   DRI  +  G
Sbjct: 162 ILADEPTGNLDSETGKEVMELLREL----NKEAGTTIVVVTHDPELAE-YADRIIELRDG 216

Query: 341 KL 342
           K+
Sbjct: 217 KI 218

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 47.9 bits (115), Expect = 4e-06
 Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 19/122 (15%)

Query: 79  LGPSGI---TLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI----RTDMTTIRR-SL 130
           +GPSG    TL L+ LG          G+   +SG  ++   DI      ++   RR  +
Sbjct: 36  VGPSGSGKSTL-LNILG----------GLDRPTSGEVRVDGTDISKLSEKELAAFRRRHI 84

Query: 131 GVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGG 190
           G   Q   L   LT  E++     L  VPK   +     ++  +G+  +     + LSGG
Sbjct: 85  GFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGG 144

Query: 191 MQ 192
            Q
Sbjct: 145 QQ 146

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 12/80 (15%)

Query: 265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLS--GRTVILTTH 322
           VA+  + AM       ++LDEPTSG+DP     I +LL       + L+  G T+I++TH
Sbjct: 146 VAIAGILAMK---PEIIVLDEPTSGLDPMGASQIMKLL-------YDLNKEGITIIISTH 195

Query: 323 YMDEADLLGDRIAIIAAGKL 342
            +D   +  D++ +++ GK+
Sbjct: 196 DVDLVPVYADKVYVMSDGKI 215

Length = 275

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 47.9 bits (115), Expect = 4e-06
 Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 8/130 (6%)

Query: 382 ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFA-LGHYSDREVRTLSGGNKRKLS 440
             N  LT RE++    R+  L    ++  ++E +  F+ LG + D  V+T S G K +L+
Sbjct: 94  GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIE-FSELGDFIDLPVKTYSSGMKARLA 152

Query: 441 TAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIER---AVSEGRCVILTSHNMEECEALC 497
            AIA      ++ +DE  +  D     F   C  R    + +G+ VIL SH+    + LC
Sbjct: 153 FAIATALEPDILLIDEVLAVGD---AAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLC 209

Query: 498 TKLTIMVNGQ 507
            +  ++  G+
Sbjct: 210 DRALVLEKGK 219

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 19/121 (15%)

Query: 79  LGPSG----ITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DMTTIRRSLGVC 133
           +GPSG     TL             M+  ++  +SG   I   DI   D   +RR +G  
Sbjct: 33  IGPSGSGKTTTLK------------MINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80

Query: 134 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHK--RTSLANTLSGGM 191
            Q   LF  LTV E++    +L    K+  +     ++  +G+          + LSGG 
Sbjct: 81  IQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQ 140

Query: 192 Q 192
           Q
Sbjct: 141 Q 141

Length = 309

>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 259 AGTSILVAVTVLFA-MSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTV 317
            G   L A+ ++ A  S  P    ILDE   G+DP   +++ E +++     H + G  V
Sbjct: 80  GGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILE-----HLVKGAQV 134

Query: 318 ILTTHYMDEADLLGDRIAII 337
           I+ TH  + A+L  D++  I
Sbjct: 135 IVITHLPELAELA-DKLIHI 153

ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.3 bits (115), Expect = 5e-06
 Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 20/108 (18%)

Query: 249 KQMALETLKKAGTSILVA--------------VTVLFAMSFVPASTVILDEPTSGVDPYS 294
           K+ AL+ LKK G S  +               V +   M++ P   + LDEP +G+DP  
Sbjct: 122 KEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEP-EILCLDEPAAGLDPEG 180

Query: 295 RRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL 342
           R+ + +L      A H     TVIL TH MD+     D + ++  GKL
Sbjct: 181 RKEMMQLFKDYQKAGH-----TVILVTHNMDDVAEYADDVLVLEHGKL 223

Length = 287

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 2/142 (1%)

Query: 368 APQKSYIGYCPQFDALNDRLTPREHLEFYSRVRN-LPSVLLNTIVNESLNKFALGHYSDR 426
            P+K  IG   Q  AL   +T  E++ F  +VR  L    +   V E+L    L  ++DR
Sbjct: 73  PPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADR 132

Query: 427 EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVIL 485
           +   LSGG +++++ A AL+    ++ LDEP S +D   R  +   ++    E G   + 
Sbjct: 133 KPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVY 192

Query: 486 TSHNMEECEALCTKLTIMVNGQ 507
            +H+ EE  A+  ++ +M +G+
Sbjct: 193 VTHDQEEALAMSDRIAVMNDGR 214

Length = 352

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 47.1 bits (113), Expect = 6e-06
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 11/78 (14%)

Query: 269 VLFAMSFVP-ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA 327
           VL A + V     ++LDEP +GVDP ++  I+ELL ++        G T+++ TH +   
Sbjct: 141 VLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL-----RREGMTILVVTHDLGLV 195

Query: 328 DLLGDRIA-----IIAAG 340
               DR+      ++A+G
Sbjct: 196 LEYFDRVLLLNRTVVASG 213

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 489
           LSGG  R+++ A  L     ++ LDEPT+G+DP  R+ +     +   E G   +L +H+
Sbjct: 146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHS 205

Query: 490 MEECEALCTKLTIMVNGQFTCLGSATHLKSK 520
           ME+      ++ +M  G     G+   + + 
Sbjct: 206 MEDAARYADQIVVMHKGTVFLQGTPREIFAD 236

Length = 290

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 22/79 (27%), Positives = 39/79 (49%)

Query: 412 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT 471
           +E +++  L H  DR +  LSGG  ++++ A AL  +    F DEP+S +D   R     
Sbjct: 121 DELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAAR 180

Query: 472 CIERAVSEGRCVILTSHNM 490
            I     +   V++  H++
Sbjct: 181 LIRELAEDDNYVLVVEHDL 199

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 28/171 (16%)

Query: 100 MLMGMLPVSSGTAKIYDHDI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL 155
           ++      +SGT ++   D+       +  +RR +GV  Q   L     V E++ F  ++
Sbjct: 46  LIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEV 105

Query: 156 KQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMN 215
             VP    +  +   +  +G+ HK  +L   LSGG Q+++              A++   
Sbjct: 106 TGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRV--------------AIARAI 151

Query: 216 AANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVA 266
             +  IL A  P+     D         MNL      L+ + KAGT+++VA
Sbjct: 152 VNSPTILIADEPTGNLDPDTT----WEIMNL------LKKINKAGTTVVVA 192

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 48.4 bits (116), Expect = 7e-06
 Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
           LSGG  ++L+ A A L + PL+ LDEPT+ +D      +     RA+++GR V+L +H
Sbjct: 459 LSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEV-LEALRALAQGRTVLLVTH 515

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARR----- 467
            +L +  L   + +    LSGG +++++ A AL     LI  DEP + +DP   +     
Sbjct: 128 SALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDY 187

Query: 468 FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
                 E    +G  VI+  H ++  +    ++  +  G+
Sbjct: 188 LKRINKE----DGITVIINLHQVDLAKKYADRIVGLKAGE 223

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 47.5 bits (113), Expect = 7e-06
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 1/96 (1%)

Query: 400 RNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTS 459
           R +P   +  IV + L    +  Y D E   LSGG K++++ A  L     +I LDE TS
Sbjct: 113 RAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTS 172

Query: 460 GMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECE 494
            +DP  +  +   I +   +    VI  +H+++E  
Sbjct: 173 MLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN 208

Length = 282

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 20/137 (14%)

Query: 67  YGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIR 120
             + + S E Q       LGP+G   G  T         ++ G LP  SG+ ++   D+ 
Sbjct: 16  NALDEVSFEAQKGRIVGFLGPNGA--GKSTT------MKIITGYLPPDSGSVQVCGEDVL 67

Query: 121 TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGI---P 177
            +   ++R++G  P++N L+  + V E++ F + +  +   L +  +  MI  +G+    
Sbjct: 68  QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ 127

Query: 178 HKRTSLANTLSGGMQRK 194
           HK+      LS G +++
Sbjct: 128 HKKI---GQLSKGYRQR 141

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.1 bits (112), Expect = 8e-06
 Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           ++LDEPTS +DP S   I EL++K+     +    TVI  TH M++A  +GD  A +  G
Sbjct: 153 LLLDEPTSALDPTSTEIIEELIVKL----KNKMNLTVIWITHNMEQAKRIGDYTAFLNKG 208

Query: 341 KL 342
            L
Sbjct: 209 IL 210

Length = 241

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 47.6 bits (114), Expect = 8e-06
 Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 489
           LSGG ++++  A+AL  N  L+  DEPT+ +D   +  +   ++    E G  +IL +H+
Sbjct: 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHD 213

Query: 490 MEECEALCTKLTIMVNGQ 507
           +     +  ++ +M  G+
Sbjct: 214 LGVVAEIADRVAVMYAGR 231

Length = 316

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 48.3 bits (115), Expect = 9e-06
 Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCV 483
           D+    LS G + +++ A  L+    ++ LDEPT  MDP  +  +   I +A  E  +  
Sbjct: 422 DKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTF 481

Query: 484 ILTSHNMEECEALCTKLTIMVNGQFTCLG 512
           I+ SH+M+    +C +  +M +G+   +G
Sbjct: 482 IIVSHDMDFVLDVCDRAALMRDGKIVKIG 510

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 47.5 bits (113), Expect = 9e-06
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIF-LDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
           LSGG  R+++ A  ++   P I  LDEP +G+DP  R+ +    +     G  VIL +HN
Sbjct: 146 LSGGQMRRVAIA-GVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHN 204

Query: 490 MEE 492
           M++
Sbjct: 205 MDD 207

Length = 287

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 4/99 (4%)

Query: 100 MLMGMLPVSSGTAKIYDHDIRT----DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL 155
           +L G L  S G  +I   D+       +  +RR +GV  Q   L    TV E++    ++
Sbjct: 47  LLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEV 106

Query: 156 KQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRK 194
           +   +   Q  +   +  +G+ HK  +    LSGG Q++
Sbjct: 107 RGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQR 145

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.2 bits (112), Expect = 9e-06
 Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 5/90 (5%)

Query: 407 LNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
           L  IV +SL   AL     DR   +  +LSGG +++L  A AL  N  ++ +DEPTS +D
Sbjct: 128 LQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187

Query: 463 PGARRFLWTCIERAVSEGRCVILTSHNMEE 492
           P + R +   I + + E   +++ +HNM++
Sbjct: 188 PVSTRKIEELILK-LKEKYTIVIVTHNMQQ 216

Length = 259

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 47.9 bits (114), Expect = 9e-06
 Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
           V+E L    L  ++DR+   LSGG ++++  A A     P++ +DEP S +DP  R  L 
Sbjct: 145 VDEQLELVGLAQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQ 204

Query: 471 -TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 506
              +E      + ++  SH+++E   +  ++ IM  G
Sbjct: 205 DELLELQSKLKKTIVFVSHDLDEALKIGNRIAIMEGG 241

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 3/95 (3%)

Query: 100 MLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP 159
           M++G++   SG        +       R  +G  P+   L+ K+ V + + + +QLK + 
Sbjct: 45  MILGIILPDSGEVLFDGKPLDIA---ARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLK 101

Query: 160 KDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRK 194
           K+ A+  I   +  L +          LS G Q+K
Sbjct: 102 KEEARRRIDEWLERLELSEYANKRVEELSKGNQQK 136

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 11/82 (13%)

Query: 269 VLFAMSFVPASTVI-LDEPTSGVDPYSRRSIWELLIKVYYASHSL--SGRTVILTTHYMD 325
           VL A +      ++ LDEP +GVD   ++ I++LL         L   G+TV++ TH + 
Sbjct: 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLL-------KELRQEGKTVLMVTHDLG 200

Query: 326 EADLLGDRIAIIAAGKLQCCGS 347
                 DR+  +    L   G 
Sbjct: 201 LVMAYFDRVICL-NRHLIASGP 221

Length = 254

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 5/62 (8%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           +I DEPTSG+D  +   + EL+ ++     +  G+ VI+ TH  +    + DR+ ++A G
Sbjct: 148 LIFDEPTSGLDYKNMERVGELIREL-----AAQGKAVIVITHDYEFLAKVCDRVLLLANG 202

Query: 341 KL 342
            +
Sbjct: 203 AI 204

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           LDEP   +D  +R  + + L+++       + +TV+L TH +DEA  L DR+ +++  
Sbjct: 154 LDEPFGALDALTREELQDELLRL----WEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207

Length = 248

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 5/67 (7%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           +I DE TS +DP  +R I ++++ +         +T+I  TH MDEA +L D++ + + G
Sbjct: 164 IIFDESTSMLDPKGKREIKKIMVDL----RKTRKKTLISITHDMDEA-ILADKVIVFSEG 218

Query: 341 KLQCCGS 347
           KL   G 
Sbjct: 219 KLIAQGK 225

Length = 271

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 8/153 (5%)

Query: 363 LDMKSAPQKS-----YIGYCPQFDALNDRLTPREHLEFYSRVRNLPS-VLLNTIVNESLN 416
           LD+     +       + +   + +LN R+T  + L    R+    S       V E L 
Sbjct: 355 LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLE 414

Query: 417 KFALGH-YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIER 475
              L   + DR    LSGG +++++ A AL     L+ LDEP S +D   +  +   ++ 
Sbjct: 415 LVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD 474

Query: 476 AVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 507
              E G   +  SH++     +  ++ +M +G+
Sbjct: 475 LQEELGLTYLFISHDLAVVRYIADRVAVMYDGR 507

Length = 539

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 25/85 (29%), Positives = 43/85 (50%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
           LSGG  R+++ A  L     ++ LDEPT+G+DP AR  +    E     G+ V+L +H M
Sbjct: 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM 204

Query: 491 EECEALCTKLTIMVNGQFTCLGSAT 515
           ++       + ++  G     G+ +
Sbjct: 205 DDVADYADYVYLLEKGHIISCGTPS 229

Length = 288

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 26/94 (27%), Positives = 47/94 (50%)

Query: 398 RVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEP 457
            VR      +   V  +L +  L H +D     LSGG +++++ A A++ + PL+  DEP
Sbjct: 105 EVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEP 164

Query: 458 TSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 491
           T  +DP     +   ++R    G  VI+ +H++ 
Sbjct: 165 TGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS 198

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 1/133 (0%)

Query: 382 ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 441
           AL   +T  +++ F  +   LP   + + VNE L    +  ++ R+   LSGG +++++ 
Sbjct: 101 ALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVAL 160

Query: 442 AIALLGNTPLIFLDEPTSGMDPGAR-RFLWTCIERAVSEGRCVILTSHNMEECEALCTKL 500
           A +L     L+ LDEP   +D   R R     ++     G   ++ +H+ EE   +  ++
Sbjct: 161 ARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRI 220

Query: 501 TIMVNGQFTCLGS 513
            IM  G+F  +G 
Sbjct: 221 AIMNRGKFVQIGE 233

Length = 377

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 15/112 (13%)

Query: 380 FDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKL 439
           F  +N  L   E               +   V E+L    +  + D+    LS G K+++
Sbjct: 103 FGPVNMGLDKDE---------------VERRVEEALKAVRMWDFRDKPPYHLSYGQKKRV 147

Query: 440 STAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 491
           + A  L  +  +I LDEP + +DP  +  L   ++R  ++G+ VI+ +H+++
Sbjct: 148 AIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD 199

Length = 274

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 48.6 bits (116), Expect = 1e-05
 Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 8/123 (6%)

Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLL---NTIVNESLNKFALGHYSDREVRT 430
           IGY  Q D      T RE L F + +R   SV        V E +    +  Y+D  V  
Sbjct: 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGV 897

Query: 431 ----LSGGNKRKLSTAIALLGNTP-LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 485
               L+   +++L+  + L+     L+FLDEPTSG+D      +   + +    G+ ++ 
Sbjct: 898 PGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILC 957

Query: 486 TSH 488
           T H
Sbjct: 958 TIH 960

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 47.9 bits (115), Expect = 1e-05
 Identities = 25/82 (30%), Positives = 43/82 (52%)

Query: 428 VRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS 487
            R+LSGGN++KL  A  L     L+   +PT G+D GA  F+   +      G+ V+L S
Sbjct: 401 ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLIS 460

Query: 488 HNMEECEALCTKLTIMVNGQFT 509
            +++E   L  ++ ++  G+  
Sbjct: 461 EDLDEILELSDRIAVIYEGRIV 482

Length = 501

>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 28/116 (24%), Positives = 41/116 (35%), Gaps = 21/116 (18%)

Query: 392 HLEFYSR------VRNLPSVLLNTIV--NESLNKFALGHYSDREVRTLSGGNKRKLSTAI 443
            L F +       +    ++L N I       N   L           SGG K   S  I
Sbjct: 74  KLAFENANGKKYTITRSLAILENVIFCHQGESNWPLL-----DMRGRCSGGEKVLASLII 128

Query: 444 ALL------GNTPLIFLDEPTSGMDPGARRF-LWTCIE-RAVSEGRCVILTSHNME 491
            L        N  ++ LDEPT+ +D       L   IE R   +   +I+ +H+ E
Sbjct: 129 RLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE 184

The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 8/133 (6%)

Query: 378 PQFDAL-NDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNK 436
           P   AL N    P        RVR            E L K  L   +      LSGG +
Sbjct: 90  PHLTALENVMFGPL-------RVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQ 142

Query: 437 RKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEAL 496
           ++++ A AL     L+  DEPTS +DP  R  +   ++    EG  +++ +H +   E +
Sbjct: 143 QRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKV 202

Query: 497 CTKLTIMVNGQFT 509
            ++L  +  G+  
Sbjct: 203 ASRLIFIDKGRIA 215

Length = 240

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 46.3 bits (111), Expect = 1e-05
 Identities = 26/103 (25%), Positives = 46/103 (44%)

Query: 415 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE 474
           L K  L   +D     LSGG +++++ A AL  +  ++  DEPTS +DP     +   ++
Sbjct: 121 LEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMK 180

Query: 475 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
               EG  +I+ +H M     +  ++  M  G+    G     
Sbjct: 181 DLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223

Length = 240

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 4/59 (6%)

Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           +LDEP   +D  +R  + ELL+ ++      +G+ V+L TH ++EA  L  R+ +++ G
Sbjct: 155 LLDEPFGALDALTREQMQELLLDLW----QETGKQVLLITHDIEEALFLATRLVVLSPG 209

Length = 259

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           +I DEPTS +D   +  I +LL K+        G T++  TH +     + DR+A++ AG
Sbjct: 167 LIADEPTSALDVSVQAQILDLLKKL----QEELGLTLLFITHDLGVVAKIADRVAVMYAG 222

Query: 341 KL 342
           K+
Sbjct: 223 KI 224

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 15/69 (21%)

Query: 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLG----DR 333
           A  V+LDEPT G+DP + R +  L+ +V      L  +T+I  TH+     L G    D+
Sbjct: 117 APIVLLDEPTVGLDPITERQLLSLIFEV------LKDKTLIWITHH-----LTGIEHMDK 165

Query: 334 IAIIAAGKL 342
           I  +  GK+
Sbjct: 166 ILFLENGKI 174

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 27/82 (32%), Positives = 43/82 (52%)

Query: 427 EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 486
           +V TLS    + +  A A   N  ++ +DEPTS +       L+T I +    G  ++  
Sbjct: 131 KVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYI 190

Query: 487 SHNMEECEALCTKLTIMVNGQF 508
           SH MEE   LC ++TI+ +GQ+
Sbjct: 191 SHKMEEIFQLCDEITILRDGQW 212

Length = 491

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 6/69 (8%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           +++DEPTS +DP S R I EL++K+          T+++ TH M +A  + D+ A    G
Sbjct: 177 LLMDEPTSALDPVSTRKIEELILKLK------EKYTIVIVTHNMQQAARVSDQTAFFYMG 230

Query: 341 KLQCCGSSV 349
           +L  C  + 
Sbjct: 231 ELVECNDTN 239

Length = 259

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCV 483
           D   R  SGG +++L  A  L+    L+F+DEPT G+D   +  L   +   V + G  V
Sbjct: 143 DDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAV 202

Query: 484 ILTSHNMEECEALCTKLTIMVNGQ 507
           I+ +H++     L  +L +M  G+
Sbjct: 203 IIVTHDLGVARLLAQRLLVMQQGR 226

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 8/136 (5%)

Query: 382 ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFA-LGHYSDREVRTLSGGNKRKLS 440
             +  LT RE++     +  L    ++  V+E + +FA LG + D+ V+T S G   +L+
Sbjct: 99  GFDPELTGRENIYLRGLILGLTRKEIDEKVDEII-EFAELGDFIDQPVKTYSSGMYARLA 157

Query: 441 TAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERA---VSEGRCVILTSHNMEECEALC 497
            ++A      ++ LDE  +  D     F   C+ER    V + + ++L SH++   +  C
Sbjct: 158 FSVATHVEPDILLLDEVLAVGDA---AFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYC 214

Query: 498 TKLTIMVNGQFTCLGS 513
            +   + +GQ    GS
Sbjct: 215 DRAIWLEHGQIRMEGS 230

Length = 249

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 15/111 (13%)

Query: 406 LLNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGM 461
           +L+ IV ESL K AL     DR      +LSGG +++L  A  L     ++ LDEP S +
Sbjct: 136 VLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASAL 195

Query: 462 DP--GARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQ 507
           DP   A+      IE  ++E +    +I+ +HNM++   +  +    +NG 
Sbjct: 196 DPISNAK------IEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGD 240

Length = 268

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTC 472
           + L K  L     R +  LSGG ++++  A AL  N  L+ LDEP   +D   R  + T 
Sbjct: 111 QMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTL 170

Query: 473 IERAVSE-GRCVILTSHNMEECEALCTKLTIMVNG 506
           + +   E G+ V+L +H++EE   + T+L ++  G
Sbjct: 171 LLKLWQETGKQVLLITHDIEEAVFMATELVLLSPG 205

Length = 255

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 15/135 (11%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           +I DEPT+G+DP     + +L++         + +TV + TH M+    + D + ++  G
Sbjct: 198 LIFDEPTAGLDPKGEHEMMQLILDA-----KANNKTVFVITHTMEHVLEVADEVIVMDKG 252

Query: 341 KLQCCGS--SVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSR 398
           K+   G+   +F          + +          I   P++  L     PR        
Sbjct: 253 KILKTGTPYEIFTDQHIINSTSIQVPRVIQVINDLIKKDPKYKKLYQ-KQPRT------- 304

Query: 399 VRNLPSVLLNTIVNE 413
           +  L   +   I   
Sbjct: 305 IEQLADAINEFIKGG 319

Length = 320

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 44.7 bits (107), Expect = 3e-05
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII 337
              +ILDE TS +DP +   I E L  +        G+TVI+  H +       DRI ++
Sbjct: 115 PPILILDEATSALDPETEALILEALRAL------AKGKTVIVIAHRLSTIR-DADRIIVL 167

Query: 338 AAGK 341
             G+
Sbjct: 168 DDGR 171

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 24/109 (22%)

Query: 249 KQMALETLKKAG--------TSIL-------VAVTVLFAMSFVPASTVIL-DEPTSGVDP 292
           K  AL+ L++ G         S L       VA+    A + V    +IL DEP + +DP
Sbjct: 125 KAQALDALERVGILDKAYQRASTLSGGQQQRVAI----ARALVQQPKIILADEPVASLDP 180

Query: 293 YSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
            S + + ++L  +    +   G TVI+  H +D A    DRI  + AG+
Sbjct: 181 ESAKKVMDILKDI----NQEDGITVIVNLHQVDLAKKYADRIIGLKAGR 225

Length = 258

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 4/59 (6%)

Query: 284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL 342
           DE TS +DP + +SI  LL  +    +   G T++L TH M+    + DR+A++  G++
Sbjct: 165 DEATSALDPETTQSILALLRDI----NRELGLTIVLITHEMEVVKRICDRVAVMEKGEV 219

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 8/89 (8%)

Query: 265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYM 324
           VA+  + AM   P   ++LDEP + +DP  + ++ E+L +++       G+TVI+ TH +
Sbjct: 147 VAIAGVLAM--DP-DVIVLDEPMAYLDPRGQETLMEILDRLHNQ-----GKTVIVATHDV 198

Query: 325 DEADLLGDRIAIIAAGKLQCCGSSVFLKN 353
           D A    D++ ++  G++   G    L +
Sbjct: 199 DLAAEWADQVIVLKEGRVLAEGDKSLLTD 227

Length = 274

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 46.4 bits (111), Expect = 3e-05
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG-ARRFLWTCIERAVSEGRCV 483
           D +V  LS G ++++    AL     L+ LDEPT+ + P  A       + R  +EG+ +
Sbjct: 135 DAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEI-LRRLAAEGKTI 193

Query: 484 ILTSHNMEECEALCTKLTIMVNG 506
           I  +H ++E  A+  ++T++  G
Sbjct: 194 IFITHKLKEVMAIADRVTVLRRG 216

Length = 501

>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 5/106 (4%)

Query: 383 LNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTA 442
           +N  LT RE+  +     ++        + E    F+L H  D     LS G KR+++  
Sbjct: 85  INPYLTLRENCLY-----DIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALL 139

Query: 443 IALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
              +    L  LDEP   +D  +   + T I+   ++G  V+LTSH
Sbjct: 140 RLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSH 185

Length = 200

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 45.9 bits (110), Expect = 3e-05
 Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 21/120 (17%)

Query: 410 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL------GNTPLIFLDEPTSGMDP 463
           +V  +L +  L H + R+   LSGG ++++  A  L       G    + LDEPTS +D 
Sbjct: 114 LVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173

Query: 464 G--------ARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 515
                    AR+      ER +     V+L  H++        ++ ++  G+    G+  
Sbjct: 174 AHQHHVLRLARQL---AHERGL--AVIVVL--HDLNLAARYADRIVLLHQGRLVADGTPA 226

Length = 258

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 5/152 (3%)

Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVR----NLPSVLLNTIVNESLNKFALGHYS 424
            Q+  +G+  Q  AL   +T  +++ F  RV+      P   +   V+E L    L   +
Sbjct: 71  VQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA 130

Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCV 483
           DR    LSGG +++++ A AL     ++ LDEP   +D   R+ L   + R   E     
Sbjct: 131 DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTT 190

Query: 484 ILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 515
           +  +H+ EE   +  ++ +M  G+   +G+  
Sbjct: 191 VFVTHDQEEALEVADRVVVMNKGRIEQVGTPD 222

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 24/99 (24%)

Query: 364 DMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHY 423
           +         I Y  + D     LT RE L+F  R +                       
Sbjct: 76  EFAEKYPGEII-YVSEEDVHFPTLTVRETLDFALRCKG---------------------- 112

Query: 424 SDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
            +  VR +SGG ++++S A AL+    ++  D  T G+D
Sbjct: 113 -NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLD 150

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR-RFL 469
            N +L +  L     ++  TLSGG + +++   ALL     + LDEP S +D   R +F 
Sbjct: 115 ANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFR 174

Query: 470 WTCIERAVSEGRCVILTSHNMEECEA 495
                   + G   +  +H++++  A
Sbjct: 175 QWVFSEVRAAGIPTVQVTHDLQDVPA 200

Length = 213

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 46.4 bits (111), Expect = 4e-05
 Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 5/65 (7%)

Query: 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII 337
              +ILDEPT G+D  ++  I+ L+ +   A+    G+ +++ +  + E   L DRI ++
Sbjct: 420 PKVLILDEPTRGIDVGAKAEIYRLIRE--LAAE---GKAILMISSELPELLGLSDRILVM 474

Query: 338 AAGKL 342
             G++
Sbjct: 475 REGRI 479

Length = 500

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 4/66 (6%)

Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
           ++DE  S +DP  R  + + L+++     +   +T++  TH +DEA  +GDRIAI+  G+
Sbjct: 187 LMDEAFSALDPLIRTEMQDELLEL----QAKLKKTIVFITHDLDEALRIGDRIAIMKDGE 242

Query: 342 LQCCGS 347
           +   G+
Sbjct: 243 IVQVGT 248

Length = 386

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 22/62 (35%), Positives = 37/62 (59%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
           LSGG  R+++ A  L     ++ LDEPT+G+DP  R+ L T  ++    G  ++L +H M
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM 205

Query: 491 EE 492
           ++
Sbjct: 206 DD 207

Length = 280

>gnl|CDD|222036 pfam13304, AAA_21, AAA domain

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 260 GTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVIL 319
           GT  L+A+ +    +    S +++DEP +G+ P   R + ELL        S  G  +I 
Sbjct: 193 GTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELL-----KELSEKGAQLIF 247

Query: 320 TTH 322
           TTH
Sbjct: 248 TTH 250

Length = 256

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 46.2 bits (109), Expect = 4e-05
 Identities = 30/133 (22%), Positives = 63/133 (47%), Gaps = 1/133 (0%)

Query: 382 ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 441
           AL   +T  ++  F   +  + +        ++L +  L +Y+      LSGG ++++  
Sbjct: 116 ALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGL 175

Query: 442 AIALLGNTPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVILTSHNMEECEALCTKL 500
           A AL  N  ++ +DE  S +DP  R  +    ++      R ++  SH+++E   +  ++
Sbjct: 176 ARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRI 235

Query: 501 TIMVNGQFTCLGS 513
            IM NG+   +G+
Sbjct: 236 AIMQNGEVVQVGT 248

Length = 400

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 45.8 bits (108), Expect = 4e-05
 Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 4/79 (5%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           +++DE  S +DP  R  + + L+K+  A H    RT++  +H +DEA  +GDRIAI+  G
Sbjct: 186 LLMDEAFSALDPLIRTEMQDELVKLQ-AKHQ---RTIVFISHDLDEAMRIGDRIAIMQNG 241

Query: 341 KLQCCGSSVFLKNSFARGY 359
           ++   G+   + N+ A  Y
Sbjct: 242 EVVQVGTPDEILNNPANDY 260

Length = 400

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 4/87 (4%)

Query: 423 YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 482
           Y  R    LSGG KR+++ A  L      +  DEPT+G+DP   + +    +    +G+ 
Sbjct: 158 YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKT 217

Query: 483 VILTSHNMEECEAL-CTKLTIMV-NGQ 507
           +IL +H+++    L  TK TI   +G+
Sbjct: 218 IILVTHDLD--NVLEWTKRTIFFKDGK 242

Length = 305

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 44.3 bits (106), Expect = 5e-05
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 11/101 (10%)

Query: 101 LMGMLPVSSGTAKIYDHDIRTDMTT---IRRSLGVCPQYNALFDKLTVEE--HMWFYSQL 155
           +MG+LP  SG+ +    DI T +      R  +G  P+   +F +LTVEE   +  Y++ 
Sbjct: 46  IMGLLPPRSGSIRFDGRDI-TGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR 104

Query: 156 KQVPKDLAQLE-ISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
           +   K  A+LE +  +   L    +R  LA TLSGG Q+ L
Sbjct: 105 RAKRK--ARLERVYELFPRLK--ERRKQLAGTLSGGEQQML 141

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.1 bits (106), Expect = 5e-05
 Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 13/155 (8%)

Query: 386 RLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL 445
           +L PR+     ++ R L  V L   V + L        SD   R LSGG ++ L  A  L
Sbjct: 129 KLVPRKEFRGVAQAR-LTEVGLWDAVKDRL--------SDSPFR-LSGGQQQLLCLARTL 178

Query: 446 LGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVN 505
             N  ++ LDEPTS +DP     +   I R++++   VI+ +HN+ +   +  +  +  +
Sbjct: 179 AVNPEVLLLDEPTSALDPTTTEKIEEFI-RSLADRLTVIIVTHNLAQAARISDRAALFFD 237

Query: 506 GQFTCLGSATHLKSKYGQGYSVKVRCAEGRSADAQ 540
           G+    G    L S     ++   R   G S D +
Sbjct: 238 GRLVEEGPTEQLFSS--PKHAETARYVAGLSGDVK 270

Length = 276

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 45.8 bits (109), Expect = 5e-05
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 411 VNESLNKFALGHYSDR--EV----RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG 464
           +   L+K  LG  ++R  E     R LSGG +++L+ A  LL     +FLDE TS +D  
Sbjct: 490 LVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEE 549

Query: 465 ARRFLWTCIERAVSEGRCVILTSH 488
               L+  ++  +     VI   H
Sbjct: 550 TEDRLYQLLKEEL-PDATVISVGH 572

Length = 604

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
           ++DEP S +D   R  +   L ++        G T I  TH   EA  + DRIA++  G+
Sbjct: 153 LMDEPLSNLDAKLRVQMRAELKRL----QQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQ 208

Query: 342 LQ 343
           +Q
Sbjct: 209 IQ 210

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 6/100 (6%)

Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA-LLGNTP-LIFLDEPTSGMDPGARRF 468
           V+++L +  +  + +RE   LSGG K+++  AIA +L   P +I LDE TS +DP  RR 
Sbjct: 121 VDQALRQVGMEDFLNREPHRLSGGQKQRV--AIAGVLALQPDIIILDEATSMLDPRGRRE 178

Query: 469 LWTCIERAVSEGR-CVILTSHNMEECEALCTKLTIMVNGQ 507
           +   + +   +    V+  +H+++E  A   ++ +M  G+
Sbjct: 179 VLETVRQLKEQKGITVLSITHDLDEA-AQADRVIVMNKGE 217

Length = 279

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 44.8 bits (106), Expect = 6e-05
 Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 28/163 (17%)

Query: 218 NNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSIL------------- 264
           +N +  AS+  +VS   +  V +  P +   K++    LK+ G   L             
Sbjct: 92  DNQLFSASVYQDVS---FGAVNLKLPEDEVRKRVD-NALKRTGIEHLKDKPTHCLSFGQK 147

Query: 265 --VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH 322
             VA+  +  M       ++LDEPT+G+DP     I +LL+++        G T+I+ TH
Sbjct: 148 KRVAIAGVLVME---PKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE----LGLTIIIATH 200

Query: 323 YMDEADLLGDRIAIIAAGK--LQCCGSSVFLKNSFARGYYLSL 363
            +D   L  D + ++  G+  LQ     VF +    R   L L
Sbjct: 201 DIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLRL 243

Length = 283

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 45.6 bits (109), Expect = 6e-05
 Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 9/85 (10%)

Query: 410 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR--- 466
            ++E + +  L +  DR++  LSGG  ++++ A ALL +    F DEPTS +D   R   
Sbjct: 192 KLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNV 251

Query: 467 -RFLWTCIERAVSEGRCVILTSHNM 490
            R +     R ++EG+ V++  H++
Sbjct: 252 ARLI-----RELAEGKYVLVVEHDL 271

Length = 590

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCV 483
           D   RT SGG +++L  A  L+    L+F+DEPT G+D   +  L   +   V E G  V
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAV 205

Query: 484 ILTSHNMEECEALCTKLTIMVNGQ 507
           ++ +H++     L  +L +M  GQ
Sbjct: 206 VIVTHDLAVARLLADRLMVMKQGQ 229

Length = 258

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
           ILDEPTS +D   +  I  LL+++      L   T +  +H +   + + DRIA++  G+
Sbjct: 164 ILDEPTSALDVSVQAQILNLLLEL-KKERGL---TYLFISHDLALVEHMCDRIAVMDNGQ 219

Query: 342 LQCCGSSVFLKNSFARGY 359
           +   G +  L +  +  Y
Sbjct: 220 IVEIGPTEELLSHPSHPY 237

Length = 252

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 1/107 (0%)

Query: 402 LPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGM 461
           LP   +   V+ +L +  + H  D+    LS G K++++ A  L+    ++ LDEPT+G+
Sbjct: 113 LPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGL 172

Query: 462 DP-GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
           DP G    +   +E     G  +I+ +H+++     C  + +M  G+
Sbjct: 173 DPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGR 219

Length = 283

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 44.5 bits (106), Expect = 7e-05
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 9/64 (14%)

Query: 281 VIL-DEPTSGVDPYSRRSIWELLIKVYYASHSLSGR-TVILTTHYMDEADLLGDRIAIIA 338
           V+L DEPTS +DP S   I EL+         L  + T+++ TH M +A  + D  A   
Sbjct: 170 VLLMDEPTSALDPISTLKIEELI-------TELKKKYTIVIVTHNMQQAARVSDYTAFFY 222

Query: 339 AGKL 342
            G+L
Sbjct: 223 LGEL 226

Length = 253

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 44.1 bits (105), Expect = 8e-05
 Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 1/133 (0%)

Query: 382 ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 441
           AL   LT  E++ F  R++ LP   +   V E+L+   L  Y++R+   LSGG +++++ 
Sbjct: 82  ALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAI 141

Query: 442 AIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKL 500
           A AL+    ++ LDEP   +D   R+ +   ++R   E G   +  +H+ EE   +  ++
Sbjct: 142 ARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRI 201

Query: 501 TIMVNGQFTCLGS 513
            +M  G+   +G+
Sbjct: 202 AVMNKGKIQQIGT 214

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 20/74 (27%), Positives = 40/74 (54%)

Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
           T SGG +++++ A   + + P++ LDEPT+ +D   R+ +   I  A + G  +I   H+
Sbjct: 149 TFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHD 208

Query: 490 MEECEALCTKLTIM 503
            E  E +  ++  +
Sbjct: 209 EEVRELVADRVMDV 222

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.4 bits (105), Expect = 8e-05
 Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 10/82 (12%)

Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
           VN+ L+  ALG         LSGG +++L  A  L  +  +I +DEP S +DP A   + 
Sbjct: 190 VNDRLDDNALG---------LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIE 240

Query: 471 TCIERAVSEGRCVILTSHNMEE 492
             IE  ++E   V++ +HNM++
Sbjct: 241 DLIEE-LAEEYTVVVVTHNMQQ 261

Length = 305

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 44.1 bits (105), Expect = 8e-05
 Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484
           +R V+ LSGG +++++ A ALL + P++ LDE TS +D  + R +   +ER   + R   
Sbjct: 134 ERGVK-LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERL-MKNRTTF 191

Query: 485 LTSH 488
           + +H
Sbjct: 192 VIAH 195

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.3 bits (104), Expect = 8e-05
 Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 11/119 (9%)

Query: 406 LLNTIVNESLNKFALGHYS----DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGM 461
           L++  V ESL + A+   +    DR  +  SGG ++++  A AL     ++ LDEPTS +
Sbjct: 119 LIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSAL 178

Query: 462 DPGARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
           DP +     + IE  + E +     I+ +HN+++   +  +   ++NG     G    +
Sbjct: 179 DPISS----SEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233

Length = 251

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           ++LDEP S +D   R  +   L ++           VI  TH + EA+ L DRI ++  G
Sbjct: 153 LLLDEPFSALDRALRLQLLPELKQI----KKNLNIPVIFVTHDLSEAEYLADRIVVMEDG 208

Query: 341 KLQ 343
           +LQ
Sbjct: 209 RLQ 211

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 16/121 (13%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
           LGP+G        G   ++R ML+GM+    G   +    + +     R ++GV PQ++ 
Sbjct: 36  LGPNGA-------GKSTIAR-MLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDN 87

Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANT----LSGGMQRK 194
           L  + TV E++  + +       ++  EI  +I  L    +  S A+     LSGGM+R+
Sbjct: 88  LDPEFTVRENLLVFGRYFG----MSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRR 143

Query: 195 L 195
           L
Sbjct: 144 L 144

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 28/112 (25%), Positives = 58/112 (51%), Gaps = 3/112 (2%)

Query: 100 MLMGMLPVSSGTAKIYDHDIR--TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ 157
           M++G++P  +G   I D DI         RR +G  PQ  ++F +L+V +++    Q++ 
Sbjct: 48  MVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD 107

Query: 158 -VPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWI 208
            +  +  +   + ++ +  I H R S+  +LSGG +R+++  +    N  +I
Sbjct: 108 DLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFI 159

Length = 241

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 45.0 bits (107), Expect = 1e-04
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 7/65 (10%)

Query: 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII 337
           A   +LDEPT G+DP + R +  LL +         G+T+++ TH +   + + DRI ++
Sbjct: 493 APLWLLDEPTEGLDPITERQVLALLFEH------AEGKTLLMVTHRLRGLERM-DRIIVL 545

Query: 338 AAGKL 342
             GK+
Sbjct: 546 DNGKI 550

Length = 573

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 7/83 (8%)

Query: 265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYM 324
           VA+  + AM     +T++LDEPT G+DP        L  ++    +    + +I+ TH M
Sbjct: 159 VALAGIIAMD---GNTLVLDEPTGGLDPKGEEDFINLFERL----NKEYKKRIIMVTHNM 211

Query: 325 DEADLLGDRIAIIAAGKLQCCGS 347
           D+   + D + ++  GK+   GS
Sbjct: 212 DQVLRIADEVIVMHEGKVISIGS 234

Length = 289

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 5/74 (6%)

Query: 267 VTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDE 326
           V +  A+S  P   ++LDEP   +D  +R ++ E L++++         TV++ TH +DE
Sbjct: 123 VAIARALSIRP-KVLLLDEPFGALDALTRGNLQEELMQIWEEHRV----TVLMVTHDVDE 177

Query: 327 ADLLGDRIAIIAAG 340
           A LL DR+ ++  G
Sbjct: 178 ALLLSDRVVMLTNG 191

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIA 335
           +  + +++DEPTS +DP S   I EL+I +          T+I+ TH M +A  + DR A
Sbjct: 167 IEPNVILMDEPTSALDPISTGKIEELIINLK------ESYTIIIVTHNMQQAGRISDRTA 220

Query: 336 IIAAGKLQ 343
               G ++
Sbjct: 221 FFLNGCIE 228

Length = 254

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 7/77 (9%)

Query: 271 FAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLL 330
           FA     A  +++DEP S +DP  R  + + L+++     S   +T++  +H +DEA  +
Sbjct: 179 FATE---APILLMDEPFSALDPLIRTQLQDELLEL----QSKLKKTIVFVSHDLDEALKI 231

Query: 331 GDRIAIIAAGKLQCCGS 347
           G+RIAI+  G++   G+
Sbjct: 232 GNRIAIMEGGRIIQHGT 248

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 8/63 (12%)

Query: 265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYM 324
           VA+  + AM       ++ DEPT+G+DP   + I E+   +        G+T+IL TH +
Sbjct: 174 VALAGILAME---PDFLVFDEPTAGLDPQGVKEILEIFDNLN-----KQGKTIILVTHDL 225

Query: 325 DEA 327
           D  
Sbjct: 226 DNV 228

Length = 305

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
           LSGG +++L  A AL     L+ LDEPTS +DP +   +   + + +S    +I+ +HNM
Sbjct: 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELL-KELSHNLSMIMVTHNM 201

Query: 491 EE 492
           ++
Sbjct: 202 QQ 203

Length = 246

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
           TLSGG +++++ A AL G+  L+ LDEP S +D    + L   I+   + G  V++ +H 
Sbjct: 454 TLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHR 513

Query: 490 MEECEALCTKLTIMVNGQFTCLGSATHLKSK 520
                 +  K+ ++ +G+    G    + +K
Sbjct: 514 PSLLGCV-DKILVLQDGRIARFGERDEVLAK 543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 11/118 (9%)

Query: 407 LNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
           +  IV E L K  L     DR       LSGG +++L+ A AL     ++ +DEPTS +D
Sbjct: 126 IKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMID 185

Query: 463 PGARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
               +     IE+ ++E +    +++ SHN ++   +   +  + NG+    GS+  +
Sbjct: 186 IVNSQ----AIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239

Length = 257

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 24/78 (30%), Positives = 40/78 (51%)

Query: 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTC 472
           E L K  L   +D     LSGG +++++ A AL  N  ++  DEPTS +DP     +   
Sbjct: 118 ELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDV 177

Query: 473 IERAVSEGRCVILTSHNM 490
           ++    EG  +++ +H M
Sbjct: 178 MKDLAEEGMTMVVVTHEM 195

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 15/66 (22%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-------GRCV 483
           LSGG +++L+ A ALL    ++ LDE TS +DP          E  + +       GR V
Sbjct: 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPE--------TEAIILQNLLQILQGRTV 661

Query: 484 ILTSHN 489
           I+ +H 
Sbjct: 662 IIIAHR 667

Length = 709

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 9/64 (14%)

Query: 281 VIL-DEPTSGVDPYSRRSIWELLIKVYYASHSLSGR-TVILTTHYMDEADLLGDRIAIIA 338
           V+L DEPTS +DP +   I EL+         L  + T+++ TH M +A  + DR A   
Sbjct: 165 VLLLDEPTSALDPIATGKIEELI-------QELKKKYTIVIVTHNMQQAARISDRTAFFY 217

Query: 339 AGKL 342
            G+L
Sbjct: 218 DGEL 221

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 25/78 (32%), Positives = 38/78 (48%)

Query: 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTC 472
           E L K  L        R LSGG +++++ A AL     +I  DEPTS +DP     +   
Sbjct: 127 ELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNT 186

Query: 473 IERAVSEGRCVILTSHNM 490
           I +   E R +++ +H M
Sbjct: 187 IRQLAQEKRTMVIVTHEM 204

Length = 250

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 17/151 (11%)

Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV 428
             K  IGY PQ   L+  L P   +  + R+R  P      I+  +L +   GH  D  +
Sbjct: 64  NGKLRIGYVPQKLYLDTTL-PLT-VNRFLRLR--PGTKKEDIL-PALKRVQAGHLIDAPM 118

Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTS 487
           + LSGG  +++  A ALL    L+ LDEPT G+D   +  L+  I++   E  C V++ S
Sbjct: 119 QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVS 178

Query: 488 HNM-----EECEALCTKLTIMVNGQFTCLGS 513
           H++     +  E LC      +N    C G+
Sbjct: 179 HDLHLVMAKTDEVLC------LNHHICCSGT 203

Length = 251

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 41.6 bits (99), Expect = 2e-04
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 9/64 (14%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSL--SGRTVILTTHYMDEADLLGDRIAIIA 338
           +ILDEPT+ + P     +++++         L   G  VI  +H +DE   + DR+ ++ 
Sbjct: 104 LILDEPTAALTPAEVERLFKVI-------RRLRAQGVAVIFISHRLDEVFEIADRVTVLR 156

Query: 339 AGKL 342
            G++
Sbjct: 157 DGRV 160

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 4/62 (6%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           ++ DE TS +DP + +SI ELL  +    +   G T++L TH M+    + DR+A++  G
Sbjct: 163 LLCDEATSALDPETTQSILELLKDI----NRELGLTIVLITHEMEVVKRICDRVAVLDQG 218

Query: 341 KL 342
           +L
Sbjct: 219 RL 220

Length = 339

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 43.7 bits (104), Expect = 2e-04
 Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 425 DREVRTLSGGNKRKLSTAIALLG-----NTPLIFLDEPTSGMDPGARRFLWTCIERAVSE 479
           ++ +  LSGGN++K     A+LG     +  +I LDEPT G+D GA+  ++  I    ++
Sbjct: 391 EQLIMNLSGGNQQK-----AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ 445

Query: 480 GRCVILTSHNMEECEALCTKLTIMVNGQ 507
           G  V+  S ++ E   +  ++ +M  G+
Sbjct: 446 GVAVLFVSSDLPEVLGVADRIVVMREGR 473

Length = 501

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 7/76 (9%)

Query: 269 VLFAMSFV--PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDE 326
           V+ AM+    P   +I DEPT+ +D   +  I +LL ++        G  +IL TH +  
Sbjct: 162 VMIAMALALNP-KLLIADEPTTALDVTVQAQILDLLKEL----QREKGTALILITHDLGV 216

Query: 327 ADLLGDRIAIIAAGKL 342
              + DR+A++ AG++
Sbjct: 217 VAEIADRVAVMYAGRI 232

Length = 316

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 8/63 (12%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGR-TVILTTHYMDEADLLGDRIAIIAA 339
           ++LDEPTS +DP S   I EL+         L  + T+++ TH M +A  + D  A +  
Sbjct: 190 LLLDEPTSALDPISTLKIEELI-------TELKSKYTIVIVTHNMQQAARVSDYTAFMYM 242

Query: 340 GKL 342
           GKL
Sbjct: 243 GKL 245

Length = 272

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
           LSGG ++++S A AL     ++  DEPTS +DP     +   +++   EG+ +++ +H M
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 212

Query: 491 E 491
            
Sbjct: 213 G 213

Length = 257

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 31/118 (26%), Positives = 53/118 (44%)

Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
           IG   Q   L    T  E++    RV   P   +   V+E L+   L H +      LSG
Sbjct: 81  IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSG 140

Query: 434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 491
           G +++++ A A++    ++  DEPT  +DP     +    E     G  V++ +H++E
Sbjct: 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE 198

Length = 223

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 15/130 (11%)

Query: 407 LNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
           L+ IV +SL    L     DR       LSGG +++L  A A+     ++ +DEP S +D
Sbjct: 122 LDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALD 181

Query: 463 PGARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL-- 517
           P A       IE  + E +    +I+ +H+M++ + +  ++    +G+     +   +  
Sbjct: 182 PVAT----NVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237

Query: 518 --KSKYGQGY 525
             +S   + Y
Sbjct: 238 NPQSSKTKRY 247

Length = 251

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
           LSGG +++L+ A ALL + P++ LDE TS +D  + R +   +ER + +GR  ++ +H
Sbjct: 470 LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALER-LMQGRTTLVIAH 526

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 12/131 (9%)

Query: 391 EHLEFYSRVRNLPS-VLLNTIVNESLNKFAL-GHYSDRE---VRTLSGGNKRKLSTAIAL 445
           E++ +  R+R +    +L   V  +L   AL     DR       LSGG +++L  A AL
Sbjct: 117 ENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARAL 176

Query: 446 LGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTI 502
             +  ++  DEPTS +DP A       IE  +S+ +    +++ +HNM++   +      
Sbjct: 177 ATDPEILLFDEPTSALDPIAT----ASIEELISDLKNKVTILIVTHNMQQAARVSDYTAY 232

Query: 503 MVNGQFTCLGS 513
           M  G+    G+
Sbjct: 233 MYMGELIEFGA 243

Length = 265

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 5/63 (7%)

Query: 281 VIL-DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA 339
           V+L DE TS +DP + RSI ELL  +    +   G T++L TH MD    + DR+A+I A
Sbjct: 161 VLLCDEATSALDPATTRSILELLKDI----NRELGLTIVLITHEMDVVKRICDRVAVIDA 216

Query: 340 GKL 342
           G+L
Sbjct: 217 GRL 219

Length = 343

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 23/93 (24%), Positives = 45/93 (48%)

Query: 415 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE 474
           L K  +   +D     LSGG +++++ A AL     ++  DEPTS +DP     +   ++
Sbjct: 137 LAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQ 196

Query: 475 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
               EGR +++ +H M     + + +  +  G+
Sbjct: 197 DLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGK 229

Length = 256

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 7/95 (7%)

Query: 403 PSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP-------LIFLD 455
           P      ++N+     AL     R    LSGG  +++  A  +L  TP       L+ LD
Sbjct: 98  PDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLD 157

Query: 456 EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
           EP + +D   +  L   +     +G  ++++SH++
Sbjct: 158 EPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDL 192

Length = 248

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 13/109 (11%)

Query: 407 LNTIVNESLNKFAL-GHYSDREVRT---LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
           L+ IV +SL   AL     DR  ++   LSGG +++L  A AL     ++ +DEPTS +D
Sbjct: 119 LDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178

Query: 463 PGARRFLWTC-IERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQ 507
           P     + T  IE  + E +    +++ +HNM++   +  K    +NG+
Sbjct: 179 P-----ISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGE 222

Length = 250

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 27/89 (30%), Positives = 45/89 (50%)

Query: 402 LPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGM 461
           L  V      +E + +  L +  DR+V  LSGG  ++++ A ALL +  + F DEP+S +
Sbjct: 185 LKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYL 244

Query: 462 DPGARRFLWTCIERAVSEGRCVILTSHNM 490
           D   R      I     +G+ VI+  H++
Sbjct: 245 DIRQRLNAARVIRELAEDGKYVIVVEHDL 273

Length = 591

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 24/95 (25%), Positives = 42/95 (44%)

Query: 100 MLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP 159
           ML G+L   +G A +   D+  +    RR LG       L+D+LT  E++ +++ L  + 
Sbjct: 50  MLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLK 109

Query: 160 KDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRK 194
            D     +  +   LG+           S GM++K
Sbjct: 110 GDELTARLEELADRLGMEELLDRRVGGFSTGMRQK 144

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 5/44 (11%)

Query: 279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH 322
           S + LDEPTSG+D  S   +  LL ++     + +GRT+I + H
Sbjct: 131 SLLFLDEPTSGLDSSSALQVMSLLRRL-----ADTGRTIICSIH 169

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 28/94 (29%), Positives = 47/94 (50%)

Query: 415 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE 474
           L +  L   SD+ V  LS G ++ +  A  L   + +I +DEPT  +       L+  I 
Sbjct: 126 LARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIR 185

Query: 475 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF 508
              S+GR ++  SH ++E   +C  +T+  +GQF
Sbjct: 186 ELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQF 219

Length = 501

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL 342
           DE TS +DP + +SI ELL ++    +   G T++L TH MD    + D +A+I+ G+L
Sbjct: 165 DEATSALDPATTQSILELLKEI----NRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 23/82 (28%), Positives = 38/82 (46%)

Query: 426 REVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 485
           R V    GG ++ +  A AL     L+ LDEP+S +       L   I    + G   + 
Sbjct: 137 RPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVY 196

Query: 486 TSHNMEECEALCTKLTIMVNGQ 507
            SH + E +A+C  + ++ +GQ
Sbjct: 197 ISHKLNEVKAVCDTICVIRDGQ 218

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 281 VIL-DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA 339
           V+L DEPTS +DP     + +++  +     +  G T+I+ TH M  A  + DR+  +  
Sbjct: 157 VMLFDEPTSALDPELVGEVLDVMKDL-----AEEGMTMIIVTHEMGFAREVADRVIFMDQ 211

Query: 340 GKLQCCGSS 348
           GK+   G  
Sbjct: 212 GKIIEEGPP 220

Length = 240

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 15/119 (12%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
           LGPSG   G  TL        ++ G    +SG   +   DI T++   +R +    Q  A
Sbjct: 32  LGPSGC--GKTTL------LRLIAGFETPTSGEILLDGKDI-TNLPPHKRPVNTVFQNYA 82

Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEIS---NMIGDLGIPHKRTSLANTLSGGMQRK 194
           LF  LTV E++ F  +LK++PK   +  ++   +++   G  +++ S    LSGG Q++
Sbjct: 83  LFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPS---QLSGGQQQR 138

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 11/91 (12%)

Query: 407 LNTIVNESLNKFAL-GHYSDREVR---TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
           L+ IV ESL K AL     DR       LSGG +++L  A AL     ++ LDEPTS +D
Sbjct: 117 LDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALD 176

Query: 463 PGARRFLWTCIERAVSEGR---CVILTSHNM 490
           P A       IE  + E +    +++ +HNM
Sbjct: 177 PIATG----KIEELIQELKKKYTIVIVTHNM 203

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 28/171 (16%)

Query: 100 MLMGMLPVSSGTAKIYDHDI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL 155
           ++ G    + G   +  HD+      ++  +RR +GV  Q   L    TV E++    ++
Sbjct: 47  LIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRV 106

Query: 156 KQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMN 215
              P    +  +S ++  +G+ HK  +L + LSGG Q+++            IA  + +N
Sbjct: 107 IGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVA-----------IAR-AIVN 154

Query: 216 AANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVA 266
                +L A  P+     D +       M L       E + + GT++L+A
Sbjct: 155 --QPAVLLADEPTGNLDPDLS----WEIMRL------FEEINRLGTTVLMA 193

Length = 223

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 1/96 (1%)

Query: 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP-GARRFLWT 471
            +L +  L   + +    LSGG +++++ A AL+    LI  DEP + +DP  +R+ +  
Sbjct: 127 AALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDL 186

Query: 472 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
                  EG  VI++ H ++       ++  + +G+
Sbjct: 187 LKRINREEGITVIVSLHQVDLAREYADRIVGLKDGR 222

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
            TLSGG +++++ A AL G+  L+ LDEP S +D      L   I  A + G  V++ +H
Sbjct: 471 ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH 530

Query: 489 NMEECEALCTKLTIMVNGQ 507
                 A   K+ ++ +G+
Sbjct: 531 RPSAL-ASVDKILVLQDGR 548

Length = 580

>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 35/144 (24%), Positives = 67/144 (46%), Gaps = 6/144 (4%)

Query: 383 LNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTA 442
           LN +LT  E++E    +  L    +  I+ E +    +G +  + V+T S G K +L  A
Sbjct: 96  LNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFA 155

Query: 443 IALLGNTPLIFLDEPTSGMDPGARRFLWTCIERA---VSEGRCVILTSHNMEECEALCTK 499
           I++  N  ++ +DE  S    G + F   C+++      +G+ +   SH++ + ++ CTK
Sbjct: 156 ISVHINPDILVIDEALS---VGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTK 212

Query: 500 LTIMVNGQFTCLGSATHLKSKYGQ 523
              +  GQ    G    +   Y +
Sbjct: 213 ALWLHYGQVKEYGDIKEVVDHYDE 236

Length = 549

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 25/159 (15%)

Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
           + Y P+ + +NDR    + +E     ++L S  L   V + L         D+    LSG
Sbjct: 183 VAYGPRNNGINDRKILEKIVE-----KSLKSAALWDEVKDDL---------DKAGNALSG 228

Query: 434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR---CVILTSHNM 490
           G +++L  A A+     ++ +DEPTS +DP A       IE  + E +    +I+ +H+M
Sbjct: 229 GQQQRLCIARAIALEPEVLLMDEPTSALDPIAT----AKIEELILELKKKYSIIIVTHSM 284

Query: 491 EECEALCTKLTIMVNGQFTCLGSAT----HLKSKYGQGY 525
            + + +  +      G     G       H K+K  + Y
Sbjct: 285 AQAQRISDETVFFYQGWIEEAGETKTIFIHPKNKRTKDY 323

Length = 329

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 10/82 (12%)

Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
           V + LNK ALG         LSGG +++L  A AL     ++ +DEP S +DP A   + 
Sbjct: 140 VKDKLNKSALG---------LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVE 190

Query: 471 TCIERAVSEGRCVILTSHNMEE 492
             I    SE    I+T HNM++
Sbjct: 191 ELIHSLRSELTIAIVT-HNMQQ 211

Length = 259

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 24/105 (22%), Positives = 47/105 (44%)

Query: 387 LTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL 446
               E++ F   V  +P   +   V  +L    L H        LSGG +++++ A A++
Sbjct: 93  RNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIV 152

Query: 447 GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 491
            +  ++  DEPT  +DP     +   +++    G  V++ +H  E
Sbjct: 153 NSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE 197

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 21/74 (28%), Positives = 40/74 (54%)

Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
           T SGG +++++ A   + + P++ LDEPT+ +D   R  +   I  A + G  ++   H+
Sbjct: 152 TFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD 211

Query: 490 MEECEALCTKLTIM 503
            E  EA+  +L  +
Sbjct: 212 EEVREAVADRLLDV 225

Length = 235

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 8/74 (10%)

Query: 276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGR-TVILTTHYMDEADLLGDRI 334
           V    +++DEP S +DP + + I EL+       H L  R T+I+ TH M +A  + D  
Sbjct: 166 VEPEVLLMDEPASALDPIATQKIEELI-------HELKARYTIIIVTHNMQQAARVSDVT 218

Query: 335 AIIAAGKLQCCGSS 348
           A    GKL   G +
Sbjct: 219 AFFYMGKLIEVGPT 232

Length = 253

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 41.3 bits (98), Expect = 5e-04
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 11/67 (16%)

Query: 278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH---YMDEADLLGDRI 334
           A   +LD+P S VD +  R I+E  I        L+ +T IL TH    +  A    D+I
Sbjct: 146 ADIYLLDDPLSAVDAHVGRHIFENCIL----GLLLNNKTRILVTHQLQLLPHA----DQI 197

Query: 335 AIIAAGK 341
            ++  G+
Sbjct: 198 VVLDNGR 204

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.6 bits (97), Expect = 5e-04
 Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 6/68 (8%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           ++LDEPTS +DP S   I ELL ++   SH+LS   +I+ TH M +   + D  A    G
Sbjct: 164 LLLDEPTSALDPISSGVIEELLKEL---SHNLS---MIMVTHNMQQGKRVADYTAFFHLG 217

Query: 341 KLQCCGSS 348
           +L   G S
Sbjct: 218 ELIEFGES 225

Length = 246

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 24/110 (21%)

Query: 248 HKQMALETLKKAG--------TSIL-------VAVTVLFAMSFVPASTVIL-DEPTSGVD 291
            KQ AL  L++ G           L       VA+    A + +    +IL DEP + +D
Sbjct: 121 EKQRALAALERVGLLDKAYQRADQLSGGQQQRVAI----ARALMQQPKLILADEPVASLD 176

Query: 292 PYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
           P S R + +LL ++    +   G TVI++ H +D A    DRI  +  G+
Sbjct: 177 PASSRQVMDLLKRI----NREEGITVIVSLHQVDLAREYADRIVGLKDGR 222

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
           LSGG +++++ A AL+GN  ++  DE TS +D  +   +   + R +  GR VI+ +H +
Sbjct: 594 LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNM-REICRGRTVIIIAHRL 652

Query: 491 EECEALCTKLTIMVNGQFTCLGSATHLKSKYG 522
               A C ++ ++  GQ    G    L +  G
Sbjct: 653 STVRA-CDRIIVLEKGQIAESGRHEELLALQG 683

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 406 LLNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGM 461
            L+ IV +SL   A+     DR       LSGG +++L  A  L     +I +DEPTS +
Sbjct: 139 TLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSAL 198

Query: 462 DPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 506
           DP +   +   ++  + +   +I+ +HNM++   +  K    +NG
Sbjct: 199 DPISTLKVEELVQE-LKKDYSIIIVTHNMQQAARISDKTAFFLNG 242

Length = 271

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 7/91 (7%)

Query: 407 LNTIVNESLNKFALGHYSDREVR----TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
           L+ +V +SL + A+      +++     LSGG +++L  A A+     ++ +DEP S +D
Sbjct: 134 LDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALD 193

Query: 463 P-GARRFLWTCIERAVSEGRCVILTSHNMEE 492
           P   R+    C+E  + E   +I+ +HNM++
Sbjct: 194 PISTRQVEELCLE--LKEQYTIIMVTHNMQQ 222

Length = 274

>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR-RFLWTCIERAVSE-GRCVILTSH 488
           +SGG  +++  A+ALL   P I  DEPT+ +D  A+ R L   +E  V +    ++L +H
Sbjct: 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARIL-DLLESIVQKRALGMLLVTH 199

Query: 489 NMEECEALCTKLTIMVNG 506
           +M     L   + +M +G
Sbjct: 200 DMGVVARLADDVAVMSHG 217

Length = 254

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 42.6 bits (101), Expect = 5e-04
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
           R LSGG +++L+ A ALL + P++ LDE TS +D      +   ++  + +GR   + +H
Sbjct: 470 RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALD-ELMKGRTTFIIAH 528

Length = 588

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 8/117 (6%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
           LGP+G        G   ++R M++GM    +G   +    +       R  +GV PQ++ 
Sbjct: 73  LGPNGA-------GKSTIAR-MILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDN 124

Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
           L  + TV E++  + +   +     +  I +++    +  K  +  + LSGGM+R+L
Sbjct: 125 LDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRL 181

Length = 340

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
           +LDEP S +DP  R  +  L+ ++          T+++ TH+ ++A  + DR+  +  G+
Sbjct: 152 LLDEPFSALDPALRAEMLALVSQL----CDERKMTLLMVTHHPEDAARIADRVVFLDNGR 207

Query: 342 LQCCGS 347
           +   GS
Sbjct: 208 IAAQGS 213

Length = 231

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 41.8 bits (99), Expect = 6e-04
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 21/97 (21%)

Query: 407 LNTIVNESLNKFALGHYSDREV--------RTLSGGNKRKLSTAIALLGNTPLIFLDEPT 458
           L+ IV  SL K AL      EV          LSGG +++L  A AL     ++ +DEPT
Sbjct: 122 LDEIVESSLKKAALWD----EVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT 177

Query: 459 SGMDP-GARRFLWTCIERAVSEGR---CVILTSHNME 491
           S +DP    +     IE  ++E +    +++ +HNM+
Sbjct: 178 SALDPISTLK-----IEELITELKKKYTIVIVTHNMQ 209

Length = 253

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR---CVILT 486
           +LSGG ++++  A  L     +I LDEPTS +DP +     T IE  + E R    +IL 
Sbjct: 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISS----TQIENMLLELRDQYTIILV 203

Query: 487 SHNMEECEALCTKLTIMVNGQF 508
           +H+M +   +  K    + G  
Sbjct: 204 THSMHQASRISDKTAFFLTGNL 225

Length = 252

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIA 335
           V    ++LDEPTS +DP S   I  +L+++          T+IL TH M +A  + D+ A
Sbjct: 165 VKPDVILLDEPTSALDPISSTQIENMLLELR------DQYTIILVTHSMHQASRISDKTA 218

Query: 336 IIAAGKL 342
               G L
Sbjct: 219 FFLTGNL 225

Length = 252

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 10/70 (14%)

Query: 281 VILDEPTSGVDPYSRRSIWELL--IKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA 338
           ++LDEPTS +DP S   I E L  +K  Y        T++L T  M +A  + DR     
Sbjct: 170 ILLDEPTSALDPISAGKIEETLLGLKDDY--------TMLLVTRSMQQASRISDRTGFFL 221

Query: 339 AGKLQCCGSS 348
            G L     +
Sbjct: 222 DGDLIEYNDT 231

Length = 252

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR-RFLWTCIERAVSEGRCVILTSHN 489
           LSGG  +++  A+ALL   P +  DEPT+ +D   + R L    E     G  ++L +H+
Sbjct: 126 LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHD 185

Query: 490 MEECEALCTKLTIMVNGQ 507
           +     +  ++ +M +G+
Sbjct: 186 LGVVARIADEVAVMDDGR 203

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 17/111 (15%)

Query: 265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWEL---LIKVYYASHSLSGRTVILTT 321
           VA+  + AM       ++LDEPT+G+DP   + + +    L + Y       G TVI +T
Sbjct: 146 VAIAGVIAME---PQVLVLDEPTAGLDPQGVKELIDFLNDLPETY-------GMTVIFST 195

Query: 322 HYMDEADLLGDRIAIIAAGKLQCCGS--SVFLKNSFARGYYLSLDMKSAPQ 370
           H +D    + D I ++  G++   G+   +FL+        + LD+ S P+
Sbjct: 196 HQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLAR--VHLDLPSLPK 244

Length = 277

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 42.1 bits (100), Expect = 7e-04
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 17/91 (18%)

Query: 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLG----D 332
            A  ++LDEPT G+D  + R I ELL +          +TV++ TH      L G    D
Sbjct: 493 DAPLLLLDEPTEGLDAETERQILELLAEH------AQNKTVLMITH-----RLTGLEQFD 541

Query: 333 RIAIIAAGKLQCCGSSVFLKNSFARGYYLSL 363
           RI ++  G++   G+   L     +G Y  L
Sbjct: 542 RICVMDNGQIIEQGTHQELLA--QQGRYYQL 570

Length = 574

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           ++LDEP + +DP  R  + +L++ +    H+ +  TV++ TH  ++A  L  R+  +  G
Sbjct: 150 LLLDEPFAALDPALRAEMLDLVLDL----HAETKMTVLMVTHQPEDAKRLAQRVVFLDNG 205

Query: 341 KL 342
           ++
Sbjct: 206 RI 207

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 10/97 (10%)

Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
           V + L+K ALG         LSGG +++L  A  +  +  +I +DEP S +DP +   + 
Sbjct: 136 VKDKLDKSALG---------LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIE 186

Query: 471 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
             I + + E   +++ +HNM++   +    +  +NG+
Sbjct: 187 DLIHK-LKEDYTIVIVTHNMQQATRVSKYTSFFLNGE 222

Length = 250

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 41.3 bits (98), Expect = 7e-04
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 8/97 (8%)

Query: 101 LMGMLPVSSGTAKIYDHDIRTDMTT---IRRSLGVCPQYNALFDKLTVEEH--MWFYSQL 155
           +MG++   SG       DI T +      R  +   P+   +F +LTVEE+  +  Y++ 
Sbjct: 49  IMGLVRPRSGRIIFDGEDI-TGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARR 107

Query: 156 KQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQ 192
            +  ++    E+  +   L    +R   A TLSGG Q
Sbjct: 108 DKEAQERDLEEVYELFPRLK--ERRNQRAGTLSGGEQ 142

Length = 237

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 41.4 bits (98), Expect = 7e-04
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-----GRCVIL 485
           LSGG +++L+ A AL+    L+ LDEPT G+ P     +   I R +       G  ++L
Sbjct: 132 LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPS----IIKDIGRVIRRLRAEGGMAILL 187

Query: 486 TSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 518
               ++    L  +  +M  G+    G+   L 
Sbjct: 188 VEQYLDFARELADRYYVMERGRVVASGAGDELD 220

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 42.4 bits (100), Expect = 7e-04
 Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 2/93 (2%)

Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
           TLSGG +++++ A A+L + P++ LDE TS +D  + + +   +E    +GR  ++ +H 
Sbjct: 476 TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETL-MKGRTTLIIAHR 534

Query: 490 MEECEALCTKLTIMVNGQFTCLGSATHLKSKYG 522
           +        ++ +M  G+    G+   L +K G
Sbjct: 535 LATVLK-ADRIVVMDQGRIVAQGTHAELIAKGG 566

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 42.4 bits (100), Expect = 7e-04
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 6/73 (8%)

Query: 425 DREVRTLSGGNKRKLSTAIAL------LGNTPLIFLDEPTSGMDPGARRFLWTCIERAVS 478
           +R +  LSGG +  L  A  L       GN PL+ LDEPT  +D   RR L   +ER + 
Sbjct: 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR 842

Query: 479 EGRCVILTSHNME 491
           +   VI+ SH+ E
Sbjct: 843 KIPQVIIVSHDEE 855

Length = 880

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 410 IVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGA 465
           IV  SL + AL     DR       LSGG +++L  A  +     +I +DEP S +DP +
Sbjct: 124 IVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPIS 183

Query: 466 RRFLWTCIERAVSEGRCVILTSHNMEE 492
              +   IE  + E   +I+ +HNM++
Sbjct: 184 TLKIEELIEE-LKEKYTIIIVTHNMQQ 209

Length = 252

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 8/68 (11%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADL--LGDRIAIIA 338
           +ILDEPTSG+D ++  ++   L +   A      R VILT H    +DL  L DRI +++
Sbjct: 165 LILDEPTSGLDSFTALNLVSTLSQ--LAR---RNRIVILTIH-QPRSDLFRLFDRILLLS 218

Query: 339 AGKLQCCG 346
           +G++   G
Sbjct: 219 SGEIVYSG 226

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 269 VLFAMSFVPASTV-ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA 327
           VL A + V    + ILDEP  G+D  +R  +   L ++   + S     ++  TH+ +E 
Sbjct: 180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEEL---AASPGAPALLFVTHHAEEI 236

Query: 328 DLLGDRIAIIAAGKLQ 343
                   ++  G++ 
Sbjct: 237 PPCFTHRLLLKEGEVV 252

Length = 257

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 41.9 bits (99), Expect = 8e-04
 Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 10/115 (8%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
           LGPSG   G  TL L      M+ G    SSG   +   DI TD+   +R +G+  Q  A
Sbjct: 37  LGPSGC--GKTTL-L-----RMIAGFEQPSSGEILLDGEDI-TDVPPEKRPIGMVFQSYA 87

Query: 139 LFDKLTVEEHMWF-YSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQ 192
           LF  +TVEE++ F     K++ K   +  +   +  +G+        + LSGG Q
Sbjct: 88  LFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQ 142

Length = 352

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 22/78 (28%), Positives = 40/78 (51%)

Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
           T+SGG ++ L+   AL+    L+ LDEP+ G+ P   + ++  IE+   +G  + L   N
Sbjct: 137 TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQN 196

Query: 490 MEECEALCTKLTIMVNGQ 507
             +   L  +  ++ NG 
Sbjct: 197 ANQALKLADRGYVLENGH 214

Length = 237

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 41.9 bits (99), Expect = 8e-04
 Identities = 31/133 (23%), Positives = 67/133 (50%), Gaps = 1/133 (0%)

Query: 382 ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 441
           AL   +T  E++ F  R++  P+  +   V E+L    L  ++ R+   LSGG +++++ 
Sbjct: 96  ALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAI 155

Query: 442 AIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKL 500
           A A++    ++ LDE  S +D   R+ +   ++    + G   +  +H+ EE   +  ++
Sbjct: 156 ARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRI 215

Query: 501 TIMVNGQFTCLGS 513
            +M +G+    G+
Sbjct: 216 VVMRDGRIEQDGT 228

Length = 375

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 41.9 bits (99), Expect = 9e-04
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNT-IVNESLNKFALGHYSDREVRTLS 432
           + Y PQ+ + +   T  + L        + S   ++    E +    L    +R V  LS
Sbjct: 403 VSYKPQYISPDYDGTVEDLLR-----SAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELS 457

Query: 433 GGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
           GG  ++++ A AL     L  LDEP++ +D
Sbjct: 458 GGELQRVAIAAALSREADLYLLDEPSAYLD 487

Length = 591

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 24/121 (19%)

Query: 100 MLMGMLPVSSGTAKIYDHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEE--------HMW 150
            L G+L   SG   +   DI +     + + L   PQ  +    LTV E        H+ 
Sbjct: 47  CLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106

Query: 151 FYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAA 210
            + +  +  +++ +  +  +    G+ H      + LSGG +R+          +  IA 
Sbjct: 107 LFGRPSKEDEEIVEEALELL----GLEHLADRPVDELSGG-ERQ----------RVLIAR 151

Query: 211 V 211
            
Sbjct: 152 A 152

Length = 258

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 40.2 bits (95), Expect = 0.001
 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 5/63 (7%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           ++ DEPT  +D  + + + ELL ++    +   G+T+I+ TH  + A    DR+  +  G
Sbjct: 164 ILADEPTGNLDSKTAKEVLELLREL----NKERGKTIIMVTHDPELAK-YADRVIELKDG 218

Query: 341 KLQ 343
           K++
Sbjct: 219 KIE 221

Length = 226

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 41.8 bits (99), Expect = 0.001
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 7/62 (11%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           ++LDEPTS +D  S     + L         L+G+T++L TH     DL+ DRI ++  G
Sbjct: 623 LLLDEPTSAMDNRSEERFKDRL------KRWLAGKTLVLVTHRTSLLDLV-DRIIVMDNG 675

Query: 341 KL 342
           ++
Sbjct: 676 RI 677

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 9/72 (12%)

Query: 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLG-DRIA 335
           PAS ++LDEPT+ +D  + + I + L +          +TV++ TH     D    DRI 
Sbjct: 474 PASLLLLDEPTAHLDAETEQIILQALQE------LAKQKTVLVITH--RLEDAADADRIV 525

Query: 336 IIAAGKLQCCGS 347
           ++  G+L   G+
Sbjct: 526 VLDNGRLVEQGT 537

Length = 559

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.5 bits (94), Expect = 0.001
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 8/68 (11%)

Query: 276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGR-TVILTTHYMDEADLLGDRI 334
           V    ++LDEPTS +DP +   I E +        SL+ R TVI+ TH + +A  + DR 
Sbjct: 180 VNPEVLLLDEPTSALDPTTTEKIEEFI-------RSLADRLTVIIVTHNLAQAARISDRA 232

Query: 335 AIIAAGKL 342
           A+   G+L
Sbjct: 233 ALFFDGRL 240

Length = 276

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 41.7 bits (99), Expect = 0.001
 Identities = 16/51 (31%), Positives = 28/51 (54%)

Query: 412 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
           +E +    L    D+ V+ LSGG  ++++ A  L  +  L  LDEP++ +D
Sbjct: 435 SEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485

Length = 590

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIA 335
           V    V+LDEPTS +DP S   I E L+++    H     T I+ TH + +A  + D+ A
Sbjct: 164 VRPKVVLLDEPTSALDPISSSEIEETLMEL---KHQY---TFIMVTHNLQQAGRISDQTA 217

Query: 336 IIAAGKL 342
            +  G L
Sbjct: 218 FLMNGDL 224

Length = 251

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 1/96 (1%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
            SGG K++      LL    L  LDEP SG+D  A R +   I +   EG+ V++ +H  
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164

Query: 491 EECEAL-CTKLTIMVNGQFTCLGSATHLKSKYGQGY 525
              + +   ++ ++ +G+    G          +GY
Sbjct: 165 RLLDYIKPDRVHVLYDGRIVKSGDKELALEIEKKGY 200

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 40.2 bits (95), Expect = 0.001
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 270 LFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADL 329
           +  +  +     ILDEP SG+D  + R + E++           G++V++ THY    D 
Sbjct: 115 ILQLLLLEPDLAILDEPDSGLDIDALRLVAEVI--NKLRE---EGKSVLIITHYQRLLDY 169

Query: 330 L-GDRIAIIAAGKLQCCGSSVFLKNSFARGY 359
           +  DR+ ++  G++   G          +GY
Sbjct: 170 IKPDRVHVLYDGRIVKSGDKELALEIEKKGY 200

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 5/119 (4%)

Query: 370 QKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVR 429
            K Y  Y      L   +T  E+L+F+S + N  S      +  +++ F L    D +  
Sbjct: 68  AKPYCTYIGHNLGLKLEMTVFENLKFWSEIYN--SA---ETLYAAIHYFKLHDLLDEKCY 122

Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
           +LS G ++ ++ A  +   + L  LDE  + +    R  L   I    + G  V+L+SH
Sbjct: 123 SLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSH 181

Length = 195

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query: 420 LGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE 479
           LG + D     LSGG K++++ A AL+    L+  DEPT+ +D  + R +   +++   E
Sbjct: 131 LGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190

Query: 480 GRCVIL 485
             C IL
Sbjct: 191 QGCTIL 196

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 10/88 (11%)

Query: 426 REVRTLSGGNKRKLSTAIAL--------LGNTPL--IFLDEPTSGMDPGARRFLWTCIER 475
           R V TLSGG     S ++AL         G   L  +F+DE    +DP A   + T +E 
Sbjct: 119 RPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALEL 178

Query: 476 AVSEGRCVILTSHNMEECEALCTKLTIM 503
             +E R V + SH  E  E +  +L ++
Sbjct: 179 IRTENRMVGVISHVEELKERIPQRLEVI 206

SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. Length = 213

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 41.4 bits (98), Expect = 0.001
 Identities = 48/155 (30%), Positives = 72/155 (46%), Gaps = 23/155 (14%)

Query: 368 APQKSYIGYCPQFDALNDRLTPREHLEFYSRVR-NLP-------SVLLNTIVNESLNKFA 419
            P+K  IGY  Q DA   RL P  H   Y +VR NL            + IV  +L    
Sbjct: 72  PPEKRRIGYVFQ-DA---RLFP--H---Y-KVRGNLRYGMAKSMVAQFDKIV--AL--LG 117

Query: 420 LGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE 479
           +    DR   +LSGG K++++   ALL    L+ +DEP + +D   +R L   +ER   E
Sbjct: 118 IEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLARE 177

Query: 480 GRCVIL-TSHNMEECEALCTKLTIMVNGQFTCLGS 513
               IL  SH+++E   L  ++ ++  G+    G 
Sbjct: 178 INIPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212

Length = 352

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 9/127 (7%)

Query: 407 LNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
           L+ +V  SL   AL     DR       LSGG +++L  A  +     +I +DEPTS +D
Sbjct: 118 LDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALD 177

Query: 463 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL----K 518
           P A   +   +E        VI+T H+M++   +  +    + G+         +    K
Sbjct: 178 PIATHKIEELMEELKKNYTIVIVT-HSMQQARRISDRTAFFLMGELVEHDDTQVIFSNPK 236

Query: 519 SKYGQGY 525
               QGY
Sbjct: 237 DDRTQGY 243

Length = 249

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 407 LNTIVNESLNKFALGHYSDREVR----TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
           L+ IV  +L K AL      +++     LSGG +++L  A  +     +I +DEPTS +D
Sbjct: 120 LDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179

Query: 463 PGARRFLWTCIERAVSEGRCVILTSHNMEE 492
           P +   +   +     E   VI+T HNM++
Sbjct: 180 PISTLKIEDLMVELKKEYTIVIVT-HNMQQ 208

Length = 251

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 9/72 (12%)

Query: 272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGR-TVILTTHYMDEADLL 330
           AM+  P S +++DEP S +DP S   + EL+       H L    T+++ TH M +A  +
Sbjct: 160 AMAVSP-SVLLMDEPASALDPISTAKVEELI-------HELKKDYTIVIVTHNMQQAARV 211

Query: 331 GDRIAIIAAGKL 342
            D+ A    G++
Sbjct: 212 SDKTAFFYMGEM 223

Length = 250

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 2/96 (2%)

Query: 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP-GARRFLWT 471
           E L K  L H  +     LSGG +++++ A AL+    L+  DEPT  +D   A+     
Sbjct: 124 EMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDL 183

Query: 472 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
            +E         ++ +H++E  + L  ++  M +GQ
Sbjct: 184 MLELNRELNTSFLVVTHDLELAKKL-DRVLEMKDGQ 218

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 11/93 (11%)

Query: 407 LNTIVNESLNKFAL-GHYSDR--EVRT-LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
           L+ IV  SL K  L     DR  E  T LSGG +++L  A A+  +  +I +DEP S +D
Sbjct: 136 LDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALD 195

Query: 463 PGARRFLWTCIERAVSEGR---CVILTSHNMEE 492
           P A       +E  + E R    +++ +H+M++
Sbjct: 196 PIAT----AKVEELIDELRQNYTIVIVTHSMQQ 224

Length = 267

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 423 YSDREV-RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR 481
           + +R V    SGG K++      LL    L  LDEP SG+D  A + +   I     EGR
Sbjct: 136 FLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGR 195

Query: 482 CVILTSHNMEECEAL-CTKLTIMVNGQFTCLG 512
            V++ +H     + +   K+ ++ +G+    G
Sbjct: 196 GVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227

Length = 251

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 7/96 (7%)

Query: 403 PSVLLNTIVNESLNKFAL----GHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPT 458
           P + ++ IV  +L    L     H   +    LSGG +++L  A AL     ++ +DEP 
Sbjct: 119 PKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPC 178

Query: 459 SGMDPGARRFLWTCIE--RAVSEGRCVILTSHNMEE 492
            G+DP A   + + I+  R  SE   VI++ HN+ +
Sbjct: 179 FGLDPIASMKVESLIQSLRLRSELTMVIVS-HNLHQ 213

Length = 261

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 5/96 (5%)

Query: 100 MLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP 159
           +++G++   SG                 R +G   +    +  LT  E++   ++L  + 
Sbjct: 45  IILGLIKPDSGEITFDGKSY-QKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIR 103

Query: 160 KDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
           K     E+ +++G      K+       S GM+++L
Sbjct: 104 KKRID-EVLDVVGLKDSAKKKVK---GFSLGMKQRL 135

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 11/64 (17%)

Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLS---GRTVILTTHYMDEADLLGDRIAIIA 338
           +LDEPT G+DP SR +I   +        +L+   G +V+  TH +DE +   DR+ ++ 
Sbjct: 155 LLDEPTVGLDPASRAAITAHV-------RALARDQGLSVLWATHLVDEIE-ADDRLVVLH 206

Query: 339 AGKL 342
            G++
Sbjct: 207 RGRV 210

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 3/102 (2%)

Query: 100 MLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP 159
           +L G+L   +G        I+    +  ++L        +  +LT  E++ F+ +     
Sbjct: 47  ILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSG 106

Query: 160 KDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVW 201
                 E    +G  G+          LS G QR++   ++W
Sbjct: 107 NAATIWEALAQVGLAGLEDL---PVGQLSAGQQRRVALARLW 145

Length = 209

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 9/117 (7%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
           LGPSG   G  TL        ++ G+    SG  ++   D  T +    R +G   Q+ A
Sbjct: 32  LGPSGS--GKSTL------LRIIAGLEQPDSGRIRLNGQDA-TRVHARDRKIGFVFQHYA 82

Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
           LF  LTV +++ F  ++++ PK   +  +  ++  + +        N LSGG ++++
Sbjct: 83  LFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRV 139

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 10/84 (11%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRT--VILTTHYMDEADLLGDRIAIIA 338
           ++LDEP +GVDP +   I  ++         L  R   V++T H + E   + DR  II+
Sbjct: 161 ILLDEPFAGVDPIAVIDIQRII-------KHLKDRGIGVLITDHNVRETLDICDRAYIIS 213

Query: 339 AGKLQCCGSSV-FLKNSFARGYYL 361
            GK+   GS    + N   R  YL
Sbjct: 214 DGKVLAEGSPEEIVNNEDVRRVYL 237

Length = 243

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 13/133 (9%)

Query: 69  ISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD 122
           + D SLE +       +G SG   G  TL L  ++  +    L   +G   I D D+ T 
Sbjct: 21  LDDLSLEIEAGELLALIGKSGC--GKTTL-LRAIAGFVKAAGL---TGRIAIADRDL-TH 73

Query: 123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTS 182
               +R L +  Q  ALF  L VE+++ F  + +++PK      +++ +  +G+      
Sbjct: 74  APPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAH 133

Query: 183 LANTLSGGMQRKL 195
           L   LSGGMQ+++
Sbjct: 134 LPAQLSGGMQQRI 146

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 11/94 (11%)

Query: 265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYM 324
           VA+    AM       +ILDE TS +DP  R      LIK           TVI  TH +
Sbjct: 149 VAIAGAVAMR---PKIIILDEATSMLDPEGRLE----LIKTIKGIRDDYQMTVISITHDL 201

Query: 325 DEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARG 358
           DE   L DR+ ++  G+++   S+   +  F+RG
Sbjct: 202 DEV-ALSDRVLVMKNGQVE---STSTPRELFSRG 231

Length = 279

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 7/62 (11%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           ++LDEPTS +D  S   + E L         L  +T+I+ TH     DL+ DRI ++ +G
Sbjct: 162 LLLDEPTSAMDMNSEERLKERL------RQLLGDKTLIIITHRPSLLDLV-DRIIVMDSG 214

Query: 341 KL 342
           ++
Sbjct: 215 RI 216

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 10/75 (13%)

Query: 276 VPASTVILDEPTSGVDPYSRRSIWELL--IKVYYASHSLSGRTVILTTHYMDEADLLGDR 333
           V    +++DEP S +DP S   I EL+  +K  Y        T+I+ TH M +A  + D 
Sbjct: 165 VKPEVILMDEPASALDPISTLKIEELIEELKEKY--------TIIIVTHNMQQAARVSDY 216

Query: 334 IAIIAAGKLQCCGSS 348
            A    G L  CG +
Sbjct: 217 TAFFYMGDLVECGET 231

Length = 252

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 10/64 (15%)

Query: 281 VILDEPTSGVDPYSRRSIWELL--IKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA 338
           +++DEPTS +DP +   I EL+  +K  Y        T+++ TH M +A  + DR A   
Sbjct: 167 ILMDEPTSALDPIATHKIEELMEELKKNY--------TIVIVTHSMQQARRISDRTAFFL 218

Query: 339 AGKL 342
            G+L
Sbjct: 219 MGEL 222

Length = 249

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
            LS G ++ L+ A A+L +  ++ LDE TS +D    + +   +E+ + +GR  I+ +H
Sbjct: 139 NLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEK-LMKGRTSIIIAH 196

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 9/83 (10%)

Query: 417 KFALGHYSDREVR--TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE 474
           + A G+ ++   +   LSGG K++++ A AL+ N  ++ LDE TS +D  + +     ++
Sbjct: 135 ELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ----QVQ 190

Query: 475 RAVSEG---RCVILTSHNMEECE 494
           +A+ +    R V++ +H +   E
Sbjct: 191 QALYDWPERRTVLVIAHRLSTVE 213

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 6/144 (4%)

Query: 383 LNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTA 442
           L+ +LT  E++EF           +  +  + +    LG +  + V+  S G + KL  +
Sbjct: 96  LSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFS 155

Query: 443 IALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAV---SEGRCVILTSHNMEECEALCTK 499
           I +  N  ++ +DE  S    G + F   C+++      + + +   SHN+ +    CTK
Sbjct: 156 INITVNPDILVIDEALS---VGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTK 212

Query: 500 LTIMVNGQFTCLGSATHLKSKYGQ 523
           +  +  G+    G    +  KY  
Sbjct: 213 IAWIEGGKLKDYGELDDVLPKYEA 236

Length = 264

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR---RFLWTCIERAVSEGRCVILTS 487
           LSGG +++L  A AL     ++ +DEPTS +DP +      L T +++  +    +I+ +
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTT----IIIVT 204

Query: 488 HNMEECEALCTKLTIMVNGQFTCLGSATHL 517
           HNM +   +    +  + G     G    L
Sbjct: 205 HNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234

Length = 252

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 19/97 (19%)

Query: 407 LNTIVNESLNKFALGHYSDREVR--------TLSGGNKRKLSTAIALLGNTPLIFLDEPT 458
           L+  V  SL   AL      EV+         LSGG +++L  A A+     ++ LDEPT
Sbjct: 141 LDEAVERSLRGAALWD----EVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPT 196

Query: 459 SGMDPGARRFLWTCIERAVSEGR---CVILTSHNMEE 492
           S +DP +       IE  ++E +    +++ +HNM++
Sbjct: 197 SALDPIST----LKIEELITELKSKYTIVIVTHNMQQ 229

Length = 272

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
             LSGG +++L+ A ALL N P++ LDE TS +D      +   +++ + +GR  ++ +H
Sbjct: 464 VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKK-LLKGRTTLIIAH 522

Query: 489 NMEECEALCTKLTIMVNGQ 507
            +        ++ ++ NG+
Sbjct: 523 RLST-IKNADRIIVLDNGR 540

Length = 567

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 39.7 bits (92), Expect = 0.003
 Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 2/98 (2%)

Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
           V+E+L    +  +  RE   LSGG K++++ A  +     +I LDE TS +DP  R+ + 
Sbjct: 121 VDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIM 180

Query: 471 TCIERAVSEGRCVILT-SHNMEECEALCTKLTIMVNGQ 507
             I     + +  +L+ +H+++E  A   ++ +M  G+
Sbjct: 181 RVIHEIKEKYQLTVLSITHDLDEA-ASSDRILVMKAGE 217

Length = 277

>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA

 Score = 39.5 bits (93), Expect = 0.003
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 430 TLSGGNKRKLSTAIALL----GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 485
           TLSGG  +++  A  L     G T L  LDEPT+G+     + L   ++R V +G  V++
Sbjct: 169 TLSGGEAQRIKLAKELSKRSTGKT-LYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVV 227

Query: 486 TSHNME 491
             HN++
Sbjct: 228 IEHNLD 233

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 16/85 (18%)

Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
           V + L+K AL         TLSGG +++L  A A+     ++ +DEP S +DP +     
Sbjct: 153 VKDDLHKSAL---------TLSGGQQQRLCIARAIAVKPDILLMDEPASALDPIST---- 199

Query: 471 TCIERAVSEGR---CVILTSHNMEE 492
             +E  + E +    +I+ +HNM++
Sbjct: 200 MQLEETMFELKKNYTIIIVTHNMQQ 224

Length = 267

>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 12/116 (10%)

Query: 380 FDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKL 439
            D L+  +T  E  EF+  V ++ S  L T+ +  L    LG    +   TLSGG  +++
Sbjct: 786 ADVLD--MTVEEAYEFFEAVPSI-SRKLQTLCDVGLGYIRLG----QPATTLSGGEAQRI 838

Query: 440 STAIALL----GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 491
             A  L     G T L  LDEPT+G+     + L   ++R V +G  V++  HN++
Sbjct: 839 KLAKELSKRSTGRT-LYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEHNLD 893

This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 10/64 (15%)

Query: 281 VILDEPTSGVDPYSRRSIWELL--IKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA 338
           +++DEPT+ +DP     I ELL  +K  Y        T++L TH   +A  + D +A + 
Sbjct: 171 LLMDEPTANIDPVGTAKIEELLFELKKEY--------TIVLVTHSPAQAARVSDYVAFLY 222

Query: 339 AGKL 342
            GKL
Sbjct: 223 LGKL 226

Length = 253

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 8/63 (12%)

Query: 265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYM 324
           VA+    AM       ++LDEPT+G+DP  R  +  +L ++        G TV+++TH +
Sbjct: 136 VAIAGAVAMR---PDVLLLDEPTAGLDPAGREQMLAILRRLRAE-----GMTVVISTHDV 187

Query: 325 DEA 327
           D A
Sbjct: 188 DLA 190

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 39.9 bits (94), Expect = 0.004
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 9/83 (10%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           ++LDE TS +DP +   I + L+++      L GRTVI+  H         DRI ++  G
Sbjct: 631 LLLDEATSALDPETEAIILQNLLQI------LQGRTVIIIAHR-LSTIRSADRIIVLDQG 683

Query: 341 KLQCCGSSVFLKNSFARGYYLSL 363
           K+   GS   L      G Y  L
Sbjct: 684 KIVEQGSHEELLAQ--GGLYARL 704

Length = 709

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 11/65 (16%)

Query: 281 VIL-DEPTSGVDPYSRRSIWELLI--KVYYASHSLSGRTVILTTHYMDEADLLGDRIAII 337
           V+L DEPTS +DP S   I EL+   K  Y        T+++ TH M +A  + D+ A  
Sbjct: 167 VLLMDEPTSALDPISTLKIEELIQELKKDY--------TIVIVTHNMQQASRISDKTAFF 218

Query: 338 AAGKL 342
             G++
Sbjct: 219 LNGEI 223

Length = 250

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
           LSGG +++L  A A+  +  ++ +DEP S +DP +   +   I     +   VI+T HNM
Sbjct: 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVT-HNM 205

Query: 491 EECEALCTK 499
           ++   +  K
Sbjct: 206 QQAARVSDK 214

Length = 250

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 39.2 bits (91), Expect = 0.004
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD 462
           V +++    + H +D+ V TLSGG +++   A+ L   T ++ LDEPT+ +D
Sbjct: 124 VTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175

Length = 265

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 1/108 (0%)

Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
           V E+++   L   + R V +LSGG +++   A+ +  ++  + LDEPTS +D   +  + 
Sbjct: 128 VEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVL 187

Query: 471 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
             + R   E G  VI   H++      C  L  +  G+    G+   L
Sbjct: 188 ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235

Length = 265

>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERA-VSEGRCVILTSHN 489
           L+ G  +K+  AIAL     L+  DEPT+ M+P  +  ++  + R   +    ++L SH+
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD 218

Query: 490 MEECEALCTKLTIMVNGQ 507
           ++       K+ ++  GQ
Sbjct: 219 LQMISQWADKINVLYCGQ 236

Length = 330

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFL 469
             LSGG +++L+ A  LL     +FLDE TS +D  +   L
Sbjct: 90  DVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRL 130

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 12/56 (21%)

Query: 426 REVRTLSGGNKRKL-STAIAL--------LGNTP---LIFLDEPTSGMDPGARRFL 469
           R+  TLSGG K+ L   A+A             P   LIFLDE  + +D    R L
Sbjct: 18  RDSGTLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEENIRSL 73

Possible exonuclease SbcCD, C subunit, on AAA proteins. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	601
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
KOG0055|consensus	1228		100.0
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
KOG0059|consensus	885		100.0
COG4525	259	TauB ABC-type taurine transport system, ATPase com	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
KOG0054|consensus	1381		100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
COG4181	228	Predicted ABC-type transport system involved in ly	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	100.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03234	226	ABCG_White The White subfamily represents ABC tran	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	100.0
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	100.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	100.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	100.0
cd03299	235	ABC_ModC_like Archeal protein closely related to M	100.0
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	100.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
PRK09984	262	phosphonate/organophosphate ester transporter subu	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	100.0
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	100.0
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	100.0
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	100.0
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	100.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	100.0
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	100.0
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	100.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK00635	1809	excinuclease ABC subunit A; Provisional	100.0
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	100.0
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	100.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	100.0
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	100.0
KOG0927|consensus	614		100.0
PRK03695	248	vitamin B12-transporter ATPase; Provisional	100.0
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	100.0
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	100.0
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	100.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	100.0
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	100.0
KOG0062|consensus	582		100.0
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	100.0
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	100.0
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	100.0
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	100.0
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	100.0
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	100.0
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	100.0
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	100.0
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	100.0
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	100.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG4674	249	Uncharacterized ABC-type transport system, ATPase	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	100.0
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	100.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	100.0
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	100.0
PRK13546	264	teichoic acids export protein ATP-binding subunit;	100.0
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	100.0
cd03215	182	ABC_Carb_Monos_II This family represents domain II	100.0
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4559	259	ABC-type hemin transport system, ATPase component	100.0
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	100.0
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	100.0
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	100.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	100.0
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	100.0
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	100.0
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	100.0
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
cd03246	173	ABCC_Protease_Secretion This family represents the	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	100.0
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	100.0
PRK10535	648	macrolide transporter ATP-binding /permease protei	100.0
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	100.0
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	100.0
COG4988	559	CydD ABC-type transport system involved in cytochr	100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.98
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.98
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.98
PRK10938	490	putative molybdenum transport ATP-binding protein	99.98
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.98
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.98
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.98
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.98
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.98
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.98
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.98
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.98
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.98
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.98
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.98
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.98
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.98
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.98
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.98
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.97
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.97
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.97
COG4172	534	ABC-type uncharacterized transport system, duplica	99.97
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.97
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.97
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.97
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.97
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.97
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.97
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.97
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.97
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.97
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.97
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.97
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.97
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.97
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.97
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.97
PRK13409	590	putative ATPase RIL; Provisional	99.97
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.97
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.97
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.97
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.97
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.97
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.97
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.97
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.97
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.97
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.97
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.97
KOG0058|consensus	716		99.97
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.97
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.97
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.97
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.97
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.97
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.97
COG4987	573	CydC ABC-type transport system involved in cytochr	99.97
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.97
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.97
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.97
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.97
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.97
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.97
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.97
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.97
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.97
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.97
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.97
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.97
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.97
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.97
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.97
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.97
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.97
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.97
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.97
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.97
PRK11147	635	ABC transporter ATPase component; Reviewed	99.97
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.97
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.97
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.97
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.97
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.97
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.97
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.97
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.97
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.97
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.97
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK10908	222	cell division protein FtsE; Provisional	99.97
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.97
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.97
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.97
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.97
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.97
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.97
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.97
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.97
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.97
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.97
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.97
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.97
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.97
PLN03232	1495	ABC transporter C family member; Provisional	99.97
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.97
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.97
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.97
PLN03130	1622	ABC transporter C family member; Provisional	99.97
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.96
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.96
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.96
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.96
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.96
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.96
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.96
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.96
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.96
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.96
KOG0057|consensus	591		99.96
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.96
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.96
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.96
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.96
PLN03140	1470	ABC transporter G family member; Provisional	99.96
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.96
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.96
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.96
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.96
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.96
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.96
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.96
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.96
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.96
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.96
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.96
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.96
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.96
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.96
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.96
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.96
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.96
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.96
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.96
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
KOG0065|consensus	1391		99.96
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.96
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.96
KOG0055|consensus	1228		99.96
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.96
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.96
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.96
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.96
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.96
PTZ00243	1560	ABC transporter; Provisional	99.96
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.96
PLN03073	718	ABC transporter F family; Provisional	99.96
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.96
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.96

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=2.4e-65  Score=568.77  Aligned_cols=379  Identities=19%  Similarity=0.301  Sum_probs=305.0

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      ++.+++|++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++...
T Consensus         4 ~i~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~NGs--GKSTL------l~~l~G~~~p~~G~i~~~g~~~~~~   71 (501)
T PRK10762          4 LLQLKGIDKAFPG----VKALSGAALNVYPGRVMALVGENGA--GKSTM------MKVLTGIYTRDAGSILYLGKEVTFN   71 (501)
T ss_pred             eEEEeeeEEEeCC----eEEeeeeeEEEcCCeEEEEECCCCC--CHHHH------HHHHhCCCCCCCcEEEECCEECCCC
Confidence            3568999999864    4599999999988      999999  56665      6799999999999999999987532


Q ss_pred             -h-HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhc---C-CChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhh
Q psy7365         123 -M-TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK---Q-VPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD  196 (601)
Q Consensus       123 -~-~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~---~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~  196 (601)
                       . ...++.+||+||++.+|+.+||+||+.|+...+   + .+..+.++++.++++.+||.+..++++++||||||||++
T Consensus        72 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~  151 (501)
T PRK10762         72 GPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVE  151 (501)
T ss_pred             CHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHH
Confidence             2 223567999999999999999999999875432   2 334455667889999999999999999999999999998


Q ss_pred             chhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccC
Q psy7365         197 NVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFV  276 (601)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  276 (601)
                      +|+||                                      +.+                                  
T Consensus       152 la~al--------------------------------------~~~----------------------------------  159 (501)
T PRK10762        152 IAKVL--------------------------------------SFE----------------------------------  159 (501)
T ss_pred             HHHHH--------------------------------------hcC----------------------------------
Confidence            65432                                      233                                  


Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc-----
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL-----  351 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-----  351 (601)
                       |++|||||||+|||+.++..++++|+++.     ..|+|||++|||++++..+||++++|.+|+++..++...+     
T Consensus       160 -p~lllLDEPt~~LD~~~~~~l~~~l~~l~-----~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~  233 (501)
T PRK10762        160 -SKVIIMDEPTDALTDTETESLFRVIRELK-----SQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTEDSL  233 (501)
T ss_pred             -CCEEEEeCCcCCCCHHHHHHHHHHHHHHH-----HCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCHHHH
Confidence             58999999999999999999999999883     3489999999999999999999999999998654322100     


Q ss_pred             ---------c-----------ccc------------------------------c-------------------cccccc
Q psy7365         352 ---------K-----------NSF------------------------------A-------------------RGYYLS  362 (601)
Q Consensus       352 ---------k-----------~~~------------------------------g-------------------~g~~ig  362 (601)
                               .           ...                              |                   ..++.+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g  313 (501)
T PRK10762        234 IEMMVGRKLEDQYPRLDKAPGEVRLKVDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDG  313 (501)
T ss_pred             HHHhcCCCccccccccccCCCCcEEEEeCcccCCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence                     0           000                              0                   000000


Q ss_pred             cccCCc----ccccccccCCCCc---ccCCCCCHHHHHHHhHH--hc---C-CChhHHHHHHHHHHHHcCCC-ccccccc
Q psy7365         363 LDMKSA----PQKSYIGYCPQFD---ALNDRLTPREHLEFYSR--VR---N-LPSVLLNTIVNESLNKFALG-HYSDREV  428 (601)
Q Consensus       363 ld~~~~----~~~~~ig~v~Q~~---~l~~~lTv~E~L~~~~~--~~---g-~~~~~~~~~~~~lLe~~~L~-~~~~~~~  428 (601)
                      .++...    ..++.+||+||++   .+++.+|+.||+.+...  ..   + ....+.++.++++++.+++. +..++++
T Consensus       314 ~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  393 (501)
T PRK10762        314 HEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI  393 (501)
T ss_pred             EECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch
Confidence            011100    1134699999996   57888999999986421  11   1 22233445688999999995 6789999


Q ss_pred             CcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEE
Q psy7365         429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF  508 (601)
Q Consensus       429 ~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~i  508 (601)
                      .+|||||||||+||+||+.+|++|||||||+|||+.+++.++++|++++++|.|||++|||++++..+|||+++|++|++
T Consensus       394 ~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i  473 (501)
T PRK10762        394 GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRI  473 (501)
T ss_pred             hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEE
Confidence            99999999999999999999999999999999999999999999999987899999999999999999999999999999


Q ss_pred             EEecCHHHH
Q psy7365         509 TCLGSATHL  517 (601)
Q Consensus       509 v~~G~~~~L  517 (601)
                      +..|+++++
T Consensus       474 ~~~~~~~~~  482 (501)
T PRK10762        474 SGEFTREQA  482 (501)
T ss_pred             EEEeccccC
Confidence            999887654

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.1e-65  Score=578.61  Aligned_cols=388  Identities=22%  Similarity=0.259  Sum_probs=312.8

Q ss_pred             chhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCC
Q psy7365          47 AYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIR  120 (601)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~  120 (601)
                      .++..+++|++.|+......++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.
T Consensus        10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGs--GKSTL------l~~l~Gll~p~~G~i~~~g~~~~   81 (623)
T PRK10261         10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGS--GKSVT------ALALMRLLEQAGGLVQCDKMLLR   81 (623)
T ss_pred             CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCC--hHHHH------HHHHHcCCCCCCeEEEECCEEec
Confidence            34567999999996544456799999999988      999999  56654      57999999999999999986441


Q ss_pred             ----------C-ch---HHh-cccEEEEccCC--CCCCCCCHHHHHHHhHhhc-CCChHHHHHHHHHHHHHcCCCc---c
Q psy7365         121 ----------T-DM---TTI-RRSLGVCPQYN--ALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIGDLGIPH---K  179 (601)
Q Consensus       121 ----------~-~~---~~~-~~~ig~v~Q~~--~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~---~  179 (601)
                                . ..   ... ++.||||||+|  .+++.+||.||+.++.... +.+..+.++++.++++.+||.+   .
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~  161 (623)
T PRK10261         82 RRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTI  161 (623)
T ss_pred             cccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhH
Confidence                      1 11   122 34799999998  6888999999999987653 6677777788999999999964   5


Q ss_pred             cCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhh
Q psy7365         180 RTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKA  259 (601)
Q Consensus       180 ~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  259 (601)
                      .++++.+|||||||||+||+||                                      +.+                 
T Consensus       162 ~~~~~~~LSgGq~QRv~iA~AL--------------------------------------~~~-----------------  186 (623)
T PRK10261        162 LSRYPHQLSGGMRQRVMIAMAL--------------------------------------SCR-----------------  186 (623)
T ss_pred             HhCCCccCCHHHHHHHHHHHHH--------------------------------------hCC-----------------
Confidence            7999999999999999865433                                      233                 


Q ss_pred             cchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecC
Q psy7365         260 GTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA  339 (601)
Q Consensus       260 ~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~  339 (601)
                                        |++|||||||++||+.++..++++|+++.    +..|+|||++|||++++..+||||++|.+
T Consensus       187 ------------------P~lLllDEPt~~LD~~~~~~l~~ll~~l~----~~~g~tvi~itHdl~~~~~~adri~vl~~  244 (623)
T PRK10261        187 ------------------PAVLIADEPTTALDVTIQAQILQLIKVLQ----KEMSMGVIFITHDMGVVAEIADRVLVMYQ  244 (623)
T ss_pred             ------------------CCEEEEeCCCCccCHHHHHHHHHHHHHHH----HhcCCEEEEEcCCHHHHHHhCCEEEEeeC
Confidence                              58999999999999999999999999983    23489999999999999999999999999


Q ss_pred             CccccccCccc----------------------------------------------------------cc-ccccccc-
Q psy7365         340 GKLQCCGSSVF----------------------------------------------------------LK-NSFARGY-  359 (601)
Q Consensus       340 GkIv~~G~~~l----------------------------------------------------------Lk-~~~g~g~-  359 (601)
                      |+++..|++..                                                          +. ......| 
T Consensus       245 G~i~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~y~  324 (623)
T PRK10261        245 GEAVETGSVEQIFHAPQHPYTRALLAAVPQLGAMKGLDYPRRFPLISLEHPAKQEPPIEQDTVVDGEPILQVRNLVTRFP  324 (623)
T ss_pred             CeecccCCHHHhhcCCCChhhhhhhhccCcccccccccCCccccccccccccccCcccccccccCCCceEEEeeeEEEEc
Confidence            99865432100                                                          00 0000000 


Q ss_pred             --------------c---cccc-----------------------------------------cCCc------ccccccc
Q psy7365         360 --------------Y---LSLD-----------------------------------------MKSA------PQKSYIG  375 (601)
Q Consensus       360 --------------~---igld-----------------------------------------~~~~------~~~~~ig  375 (601)
                                    .   ++++                                         +...      ..+++|+
T Consensus       325 ~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~  404 (623)
T PRK10261        325 LRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQ  404 (623)
T ss_pred             CCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeE
Confidence                          0   0000                                         0000      0134699


Q ss_pred             cCCCCc--ccCCCCCHHHHHHHhHHhcCC-ChhHHHHHHHHHHHHcCCC-cccccccCcCChHHHHHHHHHHHHhCCCCE
Q psy7365         376 YCPQFD--ALNDRLTPREHLEFYSRVRNL-PSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNTPL  451 (601)
Q Consensus       376 ~v~Q~~--~l~~~lTv~E~L~~~~~~~g~-~~~~~~~~~~~lLe~~~L~-~~~~~~~~~LSgGqkQRl~lA~AL~~~P~l  451 (601)
                      |+||++  .+++.+||.+++.+....++. ...+..+++.++|+.++|. +..++++.+|||||||||+||+||+.+|++
T Consensus       405 ~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~l  484 (623)
T PRK10261        405 FIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKV  484 (623)
T ss_pred             EEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            999997  588899999999876554443 2334556788999999996 678999999999999999999999999999


Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         452 IFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       452 LlLDEPTsGLD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      |||||||+|||+.++..++++|++++++ |.|||++|||++++..+||||++|++|+++..|+++++..
T Consensus       485 lllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~  553 (623)
T PRK10261        485 IIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFE  553 (623)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence            9999999999999999999999999765 8999999999999999999999999999999999999864

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4e-65  Score=567.58  Aligned_cols=379  Identities=21%  Similarity=0.307  Sum_probs=305.1

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCC--CeeEEEEccccCC
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPV--SSGTAKIYDHDIR  120 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~--~~G~v~~~g~~~~  120 (601)
                      +..++||++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|  ++|+|.++|.++.
T Consensus         5 ~l~~~nl~~~~~~----~~il~~isl~i~~Ge~~~l~G~nGs--GKSTL------l~~l~Gl~~~~~~~G~i~~~g~~~~   72 (506)
T PRK13549          5 LLEMKNITKTFGG----VKALDNVSLKVRAGEIVSLCGENGA--GKSTL------MKVLSGVYPHGTYEGEIIFEGEELQ   72 (506)
T ss_pred             eEEEeeeEEEeCC----eEeecceeEEEeCCeEEEEECCCCC--CHHHH------HHHHhCCCCCCCCCeEEEECCEECC
Confidence            4668999999863    4599999999988      999999  56665      6799999996  8999999999885


Q ss_pred             Cc-hH-HhcccEEEEccCCCCCCCCCHHHHHHHhHhhc--C-CChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhh
Q psy7365         121 TD-MT-TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK--Q-VPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL  195 (601)
Q Consensus       121 ~~-~~-~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~--~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~  195 (601)
                      .. .. ..++.+||+||++.+|+.+||.||+.|+....  + .+.++...++.++++.+|+.+..++++++||||||||+
T Consensus        73 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv  152 (506)
T PRK13549         73 ASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLV  152 (506)
T ss_pred             CCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHH
Confidence            42 22 24567999999999999999999999876543  2 34445567789999999999889999999999999999


Q ss_pred             hchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhcc
Q psy7365         196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSF  275 (601)
Q Consensus       196 ~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  275 (601)
                      ++||||                                      +.+                                 
T Consensus       153 ~la~al--------------------------------------~~~---------------------------------  161 (506)
T PRK13549        153 EIAKAL--------------------------------------NKQ---------------------------------  161 (506)
T ss_pred             HHHHHH--------------------------------------hcC---------------------------------
Confidence            854432                                      233                                 


Q ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc-----
Q psy7365         276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF-----  350 (601)
Q Consensus       276 ~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l-----  350 (601)
                        |++|||||||+|||+.++..++++|.++.     .+|+|||++|||++++..+||++++|.+|+++..++...     
T Consensus       162 --p~lllLDEPt~~LD~~~~~~l~~~l~~l~-----~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~  234 (506)
T PRK13549        162 --ARLLILDEPTASLTESETAVLLDIIRDLK-----AHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTEDD  234 (506)
T ss_pred             --CCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCHHH
Confidence              58999999999999999999999999873     358999999999999999999999999999865432110     


Q ss_pred             -------------------------c--cc---cc---ccccc-------------------------------ccc---
Q psy7365         351 -------------------------L--KN---SF---ARGYY-------------------------------LSL---  363 (601)
Q Consensus       351 -------------------------L--k~---~~---g~g~~-------------------------------igl---  363 (601)
                                               +  ++   .+   +....                               .|.   
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~  314 (506)
T PRK13549        235 IITMMVGRELTALYPREPHTIGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG  314 (506)
T ss_pred             HHHHhhCcCccccccccccCCCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC
Confidence                                     0  00   00   00000                               000   


Q ss_pred             -----------ccCCc----ccccccccCCCCc---ccCCCCCHHHHHHHhH--HhcC---CChhHHHHHHHHHHHHcCC
Q psy7365         364 -----------DMKSA----PQKSYIGYCPQFD---ALNDRLTPREHLEFYS--RVRN---LPSVLLNTIVNESLNKFAL  420 (601)
Q Consensus       364 -----------d~~~~----~~~~~ig~v~Q~~---~l~~~lTv~E~L~~~~--~~~g---~~~~~~~~~~~~lLe~~~L  420 (601)
                                 ++...    ..++.+||+||++   .+++.+|+.||+.+..  .+.+   ......++++.++++.+++
T Consensus       315 ~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  394 (506)
T PRK13549        315 RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKV  394 (506)
T ss_pred             CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCc
Confidence                       00000    0124599999985   4788899999998643  1221   1223344678899999999


Q ss_pred             C-cccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCE
Q psy7365         421 G-HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTK  499 (601)
Q Consensus       421 ~-~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~dr  499 (601)
                      . +..++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.++++|++++++|+|||++|||+++++.+|||
T Consensus       395 ~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~  474 (506)
T PRK13549        395 KTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDR  474 (506)
T ss_pred             cCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCE
Confidence            6 578999999999999999999999999999999999999999999999999999988899999999999999999999


Q ss_pred             EEEEeCCEEEEecCHHHH
Q psy7365         500 LTIMVNGQFTCLGSATHL  517 (601)
Q Consensus       500 v~iL~~G~iv~~G~~~~L  517 (601)
                      +++|++|++++.|+++++
T Consensus       475 v~~l~~G~i~~~~~~~~~  492 (506)
T PRK13549        475 VLVMHEGKLKGDLINHNL  492 (506)
T ss_pred             EEEEECCEEEEEeccccC
Confidence            999999999999987765

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=8.7e-65  Score=552.32  Aligned_cols=391  Identities=23%  Similarity=0.314  Sum_probs=321.2

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCC----eeEEEEcccc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVS----SGTAKIYDHD  118 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~----~G~v~~~g~~  118 (601)
                      +..++||++.|...+....+++|+||++.+      +|-|||       ||||++ +.|+|++|+.    +|+|.++|.+
T Consensus         5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGs-------GKSt~a-~~i~gll~~~~~~~~G~I~~~g~d   76 (539)
T COG1123           5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGS-------GKSTLA-LALMGLLPEGGRITSGEVILDGRD   76 (539)
T ss_pred             eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCC-------CHHHHH-HHHhccCCCCCcccceEEEECCcc
Confidence            567999999998887777899999999998      999999       455556 4899999986    8999999998


Q ss_pred             CCCc----hHH-hcccEEEEccCC--CCCCCCCHHHHHHHhHhhcC-CChHHHHHHHHHHHHHcCCCcccCC--ccccCC
Q psy7365         119 IRTD----MTT-IRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQ-VPKDLAQLEISNMIGDLGIPHKRTS--LANTLS  188 (601)
Q Consensus       119 ~~~~----~~~-~~~~ig~v~Q~~--~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~--~~~~LS  188 (601)
                      +..-    ... ..+.|+|+||+|  .+-|-+|+.+++.=....++ .+++++++++.++|+.+||++...+  +|++||
T Consensus        77 l~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLS  156 (539)
T COG1123          77 LLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLS  156 (539)
T ss_pred             hhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccC
Confidence            7531    222 346899999998  46777999999986666554 5588899999999999999987655  999999


Q ss_pred             hHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHH
Q psy7365         189 GGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVT  268 (601)
Q Consensus       189 gG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~  268 (601)
                      ||||||+.||+|                                      ++++                          
T Consensus       157 GG~rQRv~iAmA--------------------------------------La~~--------------------------  172 (539)
T COG1123         157 GGMRQRVMIAMA--------------------------------------LALK--------------------------  172 (539)
T ss_pred             chHHHHHHHHHH--------------------------------------HhCC--------------------------
Confidence            999999874332                                      3333                          


Q ss_pred             HHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         269 VLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       269 ~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                               |++||+||||++||+..+.++.++|+++.    ++.|.++|++|||+..+.++|||+++|.+|+++..|.+
T Consensus       173 ---------P~LLIaDEPTTaLDvt~q~qIL~llk~l~----~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~  239 (539)
T COG1123         173 ---------PKLLIADEPTTALDVTTQAQILDLLKDLQ----RELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPT  239 (539)
T ss_pred             ---------CCEEEECCCccccCHHHHHHHHHHHHHHH----HHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCH
Confidence                     58999999999999999999999999995    35799999999999999999999999999999887642


Q ss_pred             ccc-----------------------------------------c---cccc-------c--c-----------------
Q psy7365         349 VFL-----------------------------------------K---NSFA-------R--G-----------------  358 (601)
Q Consensus       349 ~lL-----------------------------------------k---~~~g-------~--g-----------------  358 (601)
                      ..+                                         +   ..+.       +  +                 
T Consensus       240 ~~i~~~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~  319 (539)
T COG1123         240 EEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGET  319 (539)
T ss_pred             HHHHhccCCcccHHHHhhCCCcccccccccccccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCE
Confidence            100                                         0   0000       0  0                 


Q ss_pred             -----------------------------cccccc--cC---CcccccccccCCCCc--ccCCCCCHHHHHHHhHHhcCC
Q psy7365         359 -----------------------------YYLSLD--MK---SAPQKSYIGYCPQFD--ALNDRLTPREHLEFYSRVRNL  402 (601)
Q Consensus       359 -----------------------------~~igld--~~---~~~~~~~ig~v~Q~~--~l~~~lTv~E~L~~~~~~~g~  402 (601)
                                                   .+.+.+  ..   ....++++-++||+|  ++.|.+||.+++.-...+++.
T Consensus       320 lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~  399 (539)
T COG1123         320 LGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG  399 (539)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc
Confidence                                         000000  00   011245788899987  589999999999887766543


Q ss_pred             C-hhHHHHHHHHHHHHcCCCc-ccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-
Q psy7365         403 P-SVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-  479 (601)
Q Consensus       403 ~-~~~~~~~~~~lLe~~~L~~-~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~-  479 (601)
                      . ..+.++++.++++.++|.. +.+++|.+||||||||++|||||+.+|++|++|||||.||+..+..+.++|+++.++ 
T Consensus       400 ~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~  479 (539)
T COG1123         400 GSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL  479 (539)
T ss_pred             cchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHh
Confidence            2 3455667999999999985 799999999999999999999999999999999999999999999999999999876 


Q ss_pred             CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHhCCc
Q psy7365         480 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQG  524 (601)
Q Consensus       480 G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~~~~  524 (601)
                      |.|.+++|||+..++.+||||++|++|+|+..|+.+.+.+...+.
T Consensus       480 g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~  524 (539)
T COG1123         480 GLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHP  524 (539)
T ss_pred             CCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCCh
Confidence            999999999999999999999999999999999998887654443

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-64  Score=563.81  Aligned_cols=377  Identities=20%  Similarity=0.323  Sum_probs=301.5

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT  121 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~  121 (601)
                      ++..++||++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++..
T Consensus         4 ~~l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~liG~nGs--GKSTL------l~~i~Gl~~p~~G~i~~~g~~i~~   71 (510)
T PRK09700          4 PYISMAGIGKSFGP----VHALKSVNLTVYPGEIHALLGENGA--GKSTL------MKVLSGIHEPTKGTITINNINYNK   71 (510)
T ss_pred             ceEEEeeeEEEcCC----eEEeeeeeEEEcCCcEEEEECCCCC--CHHHH------HHHHcCCcCCCccEEEECCEECCC
Confidence            34668999999863    4599999999988      999999  56665      579999999999999999998854


Q ss_pred             c-hH-HhcccEEEEccCCCCCCCCCHHHHHHHhHh----hcCC---ChHHHHHHHHHHHHHcCCCcccCCccccCChHHH
Q psy7365         122 D-MT-TIRRSLGVCPQYNALFDKLTVEEHMWFYSQ----LKQV---PKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQ  192 (601)
Q Consensus       122 ~-~~-~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~----~~~~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~  192 (601)
                      . .. ..++.+||+||++.+|+.+||.||+.++..    .++.   +..+.+.++.++++.+||.+..++++.+||||||
T Consensus        72 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~  151 (510)
T PRK09700         72 LDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHK  151 (510)
T ss_pred             CCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHH
Confidence            2 22 234579999999999999999999987543    1232   2344567789999999999999999999999999


Q ss_pred             hhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHh
Q psy7365         193 RKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFA  272 (601)
Q Consensus       193 qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  272 (601)
                      ||+++||+|+                                      .+                              
T Consensus       152 qrv~ia~al~--------------------------------------~~------------------------------  163 (510)
T PRK09700        152 QMLEIAKTLM--------------------------------------LD------------------------------  163 (510)
T ss_pred             HHHHHHHHHh--------------------------------------cC------------------------------
Confidence            9998654332                                      22                              


Q ss_pred             hccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc--
Q psy7365         273 MSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF--  350 (601)
Q Consensus       273 ~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l--  350 (601)
                           |++|||||||+|||+.++..++++|+++.     .+|+|||++|||++++..+||++++|.+|+++..+.+..  
T Consensus       164 -----p~lllLDEPt~~LD~~~~~~l~~~l~~l~-----~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  233 (510)
T PRK09700        164 -----AKVIIMDEPTSSLTNKEVDYLFLIMNQLR-----KEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVS  233 (510)
T ss_pred             -----CCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCC
Confidence                 58999999999999999999999999983     358999999999999999999999999999865442210  


Q ss_pred             --------------------------------c--cc---ccc-----------cc------------------------
Q psy7365         351 --------------------------------L--KN---SFA-----------RG------------------------  358 (601)
Q Consensus       351 --------------------------------L--k~---~~g-----------~g------------------------  358 (601)
                                                      +  ++   ...           .|                        
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~  313 (510)
T PRK09700        234 NDDIVRLMVGRELQNRFNAMKENVSNLAHETVFEVRNVTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVD  313 (510)
T ss_pred             HHHHHHHhcCCCccccccccccccccCCCCcEEEEeCccccCCCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence                                            0  00   000           00                        


Q ss_pred             -------cccccccCCc----ccccccccCCCC---cccCCCCCHHHHHHHhHHhc--------CC-ChhHHHHHHHHHH
Q psy7365         359 -------YYLSLDMKSA----PQKSYIGYCPQF---DALNDRLTPREHLEFYSRVR--------NL-PSVLLNTIVNESL  415 (601)
Q Consensus       359 -------~~igld~~~~----~~~~~ig~v~Q~---~~l~~~lTv~E~L~~~~~~~--------g~-~~~~~~~~~~~lL  415 (601)
                             ++.+.++...    ..++++||+||+   ..+++.+|+.||+.+....+        +. .....++++.+++
T Consensus       314 ~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  393 (510)
T PRK09700        314 KRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQR  393 (510)
T ss_pred             cCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHH
Confidence                   0000001000    013469999998   46888999999998643211        11 1223345678999


Q ss_pred             HHcCCC-cccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHH
Q psy7365         416 NKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECE  494 (601)
Q Consensus       416 e~~~L~-~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~  494 (601)
                      +.+++. +..++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.++++|++++++|.|||++|||++++.
T Consensus       394 ~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~  473 (510)
T PRK09700        394 ELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEII  473 (510)
T ss_pred             HhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence            999997 7889999999999999999999999999999999999999999999999999999878999999999999999


Q ss_pred             hhCCEEEEEeCCEEEEecCH
Q psy7365         495 ALCTKLTIMVNGQFTCLGSA  514 (601)
Q Consensus       495 ~l~drv~iL~~G~iv~~G~~  514 (601)
                      .+|||+++|++|+++..++.
T Consensus       474 ~~~d~i~~l~~G~i~~~~~~  493 (510)
T PRK09700        474 TVCDRIAVFCEGRLTQILTN  493 (510)
T ss_pred             hhCCEEEEEECCEEEEEecC
Confidence            99999999999999887754

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.2e-64  Score=561.08  Aligned_cols=379  Identities=19%  Similarity=0.300  Sum_probs=304.4

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-  121 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-  121 (601)
                      +..+++|++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. 
T Consensus         4 ~l~~~~l~~~~~~----~~il~~isl~i~~Ge~~~l~G~nGs--GKSTL------l~~l~Gl~~p~~G~I~~~g~~i~~~   71 (501)
T PRK11288          4 YLSFDGIGKTFPG----VKALDDISFDCRAGQVHALMGENGA--GKSTL------LKILSGNYQPDAGSILIDGQEMRFA   71 (501)
T ss_pred             eEEEeeeEEEECC----EEEEeeeeEEEeCCcEEEEECCCCC--CHHHH------HHHHhCCCCCCCCEEEECCEECCCC
Confidence            4568999999864    3599999999988      999999  56665      679999999999999999998753 


Q ss_pred             -chHHhcccEEEEccCCCCCCCCCHHHHHHHhHh--hcC-CChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhc
Q psy7365         122 -DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ--LKQ-VPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDN  197 (601)
Q Consensus       122 -~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~--~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~  197 (601)
                       .....++.+||+||++.+|+.+||.||+.++..  ..+ .+..+.++++.++++.+|+.+..++++.+||||||||+++
T Consensus        72 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~l  151 (501)
T PRK11288         72 STTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEI  151 (501)
T ss_pred             CHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHH
Confidence             223456789999999999999999999998642  223 3445566788999999999988899999999999999986


Q ss_pred             hhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCC
Q psy7365         198 VKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVP  277 (601)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  277 (601)
                      ||+|                                      +.+                                   
T Consensus       152 aral--------------------------------------~~~-----------------------------------  158 (501)
T PRK11288        152 AKAL--------------------------------------ARN-----------------------------------  158 (501)
T ss_pred             HHHH--------------------------------------HhC-----------------------------------
Confidence            5432                                      222                                   


Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc-c------
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV-F------  350 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~-l------  350 (601)
                      |+++||||||+|||+.++..++++|+++.     .+|+|||++||+++++..+||++++|.+|+++..+... .      
T Consensus       159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~-----~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~  233 (501)
T PRK11288        159 ARVIAFDEPTSSLSAREIEQLFRVIRELR-----AEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVDRDQL  233 (501)
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHHHHHHH-----hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccCCHHHH
Confidence            58999999999999999999999999872     35899999999999999999999999999986433210 0      


Q ss_pred             c----c----------c-cc-----------------------------------c-------------------ccccc
Q psy7365         351 L----K----------N-SF-----------------------------------A-------------------RGYYL  361 (601)
Q Consensus       351 L----k----------~-~~-----------------------------------g-------------------~g~~i  361 (601)
                      .    .          + ..                                   |                   ..++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~  313 (501)
T PRK11288        234 VQAMVGREIGDIYGYRPRPLGEVRLRLDGLKGPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLD  313 (501)
T ss_pred             HHHhcCCCccccccccccCCCCcEEEEeccccCCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEEC
Confidence            0    0          0 00                                   0                   00000


Q ss_pred             ccccCCc----ccccccccCCCCc---ccCCCCCHHHHHHHhHHhc----C--CChhHHHHHHHHHHHHcCCC-cccccc
Q psy7365         362 SLDMKSA----PQKSYIGYCPQFD---ALNDRLTPREHLEFYSRVR----N--LPSVLLNTIVNESLNKFALG-HYSDRE  427 (601)
Q Consensus       362 gld~~~~----~~~~~ig~v~Q~~---~l~~~lTv~E~L~~~~~~~----g--~~~~~~~~~~~~lLe~~~L~-~~~~~~  427 (601)
                      +.++...    ..++.++|+||++   .+++.+|+.||+.+....+    +  ......++.+.++++.+++. +..+++
T Consensus       314 g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~  393 (501)
T PRK11288        314 GKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQL  393 (501)
T ss_pred             CEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCc
Confidence            0011000    0135699999996   4888999999997643211    1  12223345688999999994 678999


Q ss_pred             cCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCE
Q psy7365         428 VRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ  507 (601)
Q Consensus       428 ~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~  507 (601)
                      +.+|||||||||+||+||+.+|++|||||||+|||+.+++.++++|++++++|.|||++|||+++++.+|||+++|++|+
T Consensus       394 ~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~  473 (501)
T PRK11288        394 IMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGR  473 (501)
T ss_pred             cccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCE
Confidence            99999999999999999999999999999999999999999999999998889999999999999999999999999999


Q ss_pred             EEEecCHHHH
Q psy7365         508 FTCLGSATHL  517 (601)
Q Consensus       508 iv~~G~~~~L  517 (601)
                      +++.|+++++
T Consensus       474 i~~~~~~~~~  483 (501)
T PRK11288        474 IAGELAREQA  483 (501)
T ss_pred             EEEEEccccC
Confidence            9999987653

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=2.9e-64  Score=563.51  Aligned_cols=386  Identities=22%  Similarity=0.306  Sum_probs=307.4

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCC-----CeeEEEEccc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPV-----SSGTAKIYDH  117 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~-----~~G~v~~~g~  117 (601)
                      +..+++|++.|+..+....+++|+||++.+      +|||||  |||||      .++|+|+++|     ++|+|.++|.
T Consensus         5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGs--GKSTL------l~~i~G~~~~~~~~~~~G~i~~~g~   76 (529)
T PRK15134          5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGS--GKSVT------ALSILRLLPSPPVVYPSGDIRFHGE   76 (529)
T ss_pred             eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCC--cHHHH------HHHHhcCCCCCcCCccceEEEECCE
Confidence            466899999986322235799999999988      999999  56665      5799999987     7999999999


Q ss_pred             cCCCc-hH---Hhc-ccEEEEccCCC--CCCCCCHHHHHHHhHhh-cCCChHHHHHHHHHHHHHcCCCc---ccCCcccc
Q psy7365         118 DIRTD-MT---TIR-RSLGVCPQYNA--LFDKLTVEEHMWFYSQL-KQVPKDLAQLEISNMIGDLGIPH---KRTSLANT  186 (601)
Q Consensus       118 ~~~~~-~~---~~~-~~ig~v~Q~~~--~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~---~~~~~~~~  186 (601)
                      ++... ..   ..+ +.+||+||++.  +++.+++.+|+.+.... .+.+..+.+.++.++++.+||.+   ..++++.+
T Consensus        77 ~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~  156 (529)
T PRK15134         77 SLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQ  156 (529)
T ss_pred             ecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcc
Confidence            87532 11   223 57999999985  67778999999876443 35666666788999999999986   35899999


Q ss_pred             CChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHH
Q psy7365         187 LSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVA  266 (601)
Q Consensus       187 LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a  266 (601)
                      |||||||||++||||                                      +.+                        
T Consensus       157 LSgGe~qrv~iAraL--------------------------------------~~~------------------------  174 (529)
T PRK15134        157 LSGGERQRVMIAMAL--------------------------------------LTR------------------------  174 (529)
T ss_pred             cCHHHHHHHHHHHHH--------------------------------------hcC------------------------
Confidence            999999999865432                                      233                        


Q ss_pred             HHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccccc
Q psy7365         267 VTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  346 (601)
Q Consensus       267 ~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G  346 (601)
                                 |++|||||||++||+.++..++++|+++.    +..|+|||++|||++++..+|||+++|.+|+++..+
T Consensus       175 -----------p~llllDEPt~~LD~~~~~~l~~~l~~l~----~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g  239 (529)
T PRK15134        175 -----------PELLIADEPTTALDVSVQAQILQLLRELQ----QELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQN  239 (529)
T ss_pred             -----------CCEEEEcCCCCccCHHHHHHHHHHHHHHH----HhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeC
Confidence                       58999999999999999999999999983    224899999999999999999999999999986543


Q ss_pred             Cccc--------------------------------c--cc---ccc-----------cccc----------------c-
Q psy7365         347 SSVF--------------------------------L--KN---SFA-----------RGYY----------------L-  361 (601)
Q Consensus       347 ~~~l--------------------------------L--k~---~~g-----------~g~~----------------i-  361 (601)
                      ++..                                +  ++   .++           ....                + 
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G  319 (529)
T PRK15134        240 RAATLFSAPTHPYTQKLLNSEPSGDPVPLPEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVG  319 (529)
T ss_pred             CHHHHhhCCCCHHHHHHHHhCccccccccCCCCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEEC
Confidence            2100                                0  00   000           0000                0 


Q ss_pred             --------------------------ccccCCcc------cccccccCCCCc--ccCCCCCHHHHHHHhHHhcC--CChh
Q psy7365         362 --------------------------SLDMKSAP------QKSYIGYCPQFD--ALNDRLTPREHLEFYSRVRN--LPSV  405 (601)
Q Consensus       362 --------------------------gld~~~~~------~~~~ig~v~Q~~--~l~~~lTv~E~L~~~~~~~g--~~~~  405 (601)
                                                +.++....      .++++||+||++  .+++.+||.||+.+....++  .+..
T Consensus       320 ~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~  399 (529)
T PRK15134        320 ESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAA  399 (529)
T ss_pred             CCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChH
Confidence                                      00000000      134699999997  47888999999987644332  3334


Q ss_pred             HHHHHHHHHHHHcCCC-cccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CcEE
Q psy7365         406 LLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCV  483 (601)
Q Consensus       406 ~~~~~~~~lLe~~~L~-~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~-G~tV  483 (601)
                      +.++++.++++.++|. +..++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.++++|++++++ |+||
T Consensus       400 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tv  479 (529)
T PRK15134        400 QREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAY  479 (529)
T ss_pred             HHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEE
Confidence            4456788999999997 5789999999999999999999999999999999999999999999999999999865 8999


Q ss_pred             EEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         484 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       484 llsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      |++|||++++..+|||+++|++|++++.|+++++.+
T Consensus       480 i~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  515 (529)
T PRK15134        480 LFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFA  515 (529)
T ss_pred             EEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhc
Confidence            999999999999999999999999999999998854

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=6.8e-64  Score=559.44  Aligned_cols=380  Identities=22%  Similarity=0.307  Sum_probs=305.4

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCC--CCCeeEEEEc-------
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGML--PVSSGTAKIY-------  115 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~--~~~~G~v~~~-------  115 (601)
                      .++||++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|++  +|++|+|.++       
T Consensus         2 ~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~iiG~nGs--GKSTL------l~~l~Gl~~~~p~~G~i~~~~~~~~~~   69 (520)
T TIGR03269         2 EVKNLTKKFDG----KEVLKNISFTIEEGEVLGILGRSGA--GKSVL------MHVLRGMDQYEPTSGRIIYHVALCEKC   69 (520)
T ss_pred             EEEEEEEEECC----eEeeeceeEEEcCCCEEEEECCCCC--CHHHH------HHHHhhcccCCCCceEEEEeccccccc
Confidence            37899999853    4599999999988      999999  56665      57999997  7999999997       


Q ss_pred             ----------------cccCC-------C-c---hHHhcccEEEEccC-CCCCCCCCHHHHHHHhHhhcCCChHHHHHHH
Q psy7365         116 ----------------DHDIR-------T-D---MTTIRRSLGVCPQY-NALFDKLTVEEHMWFYSQLKQVPKDLAQLEI  167 (601)
Q Consensus       116 ----------------g~~~~-------~-~---~~~~~~~ig~v~Q~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~  167 (601)
                                      |.++.       . .   ....++.+||+||+ +.+|+.+||+||+.|+....+.+..+.+.++
T Consensus        70 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~  149 (520)
T TIGR03269        70 GYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRA  149 (520)
T ss_pred             cccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHH
Confidence                            32221       0 0   12345679999998 5789999999999998776677666667789


Q ss_pred             HHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchh
Q psy7365         168 SNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLT  247 (601)
Q Consensus       168 ~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~  247 (601)
                      .++++.+||++..++++.+|||||||||++||||                                      +.+     
T Consensus       150 ~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al--------------------------------------~~~-----  186 (520)
T TIGR03269       150 VDLIEMVQLSHRITHIARDLSGGEKQRVVLARQL--------------------------------------AKE-----  186 (520)
T ss_pred             HHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHH--------------------------------------hcC-----
Confidence            9999999999989999999999999999865432                                      232     


Q ss_pred             hHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHH
Q psy7365         248 HKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA  327 (601)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~  327 (601)
                                                    |++|||||||++||+.++.+++++|+++.    +..|+|||++|||++++
T Consensus       187 ------------------------------p~lllLDEPt~~LD~~~~~~l~~~l~~l~----~~~g~tviivtHd~~~~  232 (520)
T TIGR03269       187 ------------------------------PFLFLADEPTGTLDPQTAKLVHNALEEAV----KASGISMVLTSHWPEVI  232 (520)
T ss_pred             ------------------------------CCEEEeeCCcccCCHHHHHHHHHHHHHHH----HhcCcEEEEEeCCHHHH
Confidence                                          58999999999999999999999999873    23489999999999999


Q ss_pred             HhcCCEEEEecCCccccccCcc------------------------cc--c---cccc------c---------------
Q psy7365         328 DLLGDRIAIIAAGKLQCCGSSV------------------------FL--K---NSFA------R---------------  357 (601)
Q Consensus       328 ~~l~Drv~vL~~GkIv~~G~~~------------------------lL--k---~~~g------~---------------  357 (601)
                      ..+||++++|.+|+++..++..                        .+  +   -.+.      .               
T Consensus       233 ~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~  312 (520)
T TIGR03269       233 EDLSDKAIWLENGEIKEEGTPDEVVAVFMEGVSEVEKECEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEI  312 (520)
T ss_pred             HHhcCEEEEEeCCEEeeecCHHHHHHHHHhhchhhccccccCCCCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCE
Confidence            9999999999999986443210                        00  0   0000      0               


Q ss_pred             --------------------------c--ccc-ccc---cCCc------ccccccccCCCCcccCCCCCHHHHHHHhHHh
Q psy7365         358 --------------------------G--YYL-SLD---MKSA------PQKSYIGYCPQFDALNDRLTPREHLEFYSRV  399 (601)
Q Consensus       358 --------------------------g--~~i-gld---~~~~------~~~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~  399 (601)
                                                |  ++. +.+   +...      ..++++||+||++.+++.+||.||+.+...+
T Consensus       313 ~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~  392 (520)
T TIGR03269       313 FGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL  392 (520)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc
Confidence                                      0  000 000   0000      1134699999999899999999999875432


Q ss_pred             cCCChhHHHHHHHHHHHHcCCCc-----ccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q psy7365         400 RNLPSVLLNTIVNESLNKFALGH-----YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE  474 (601)
Q Consensus       400 ~g~~~~~~~~~~~~lLe~~~L~~-----~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~  474 (601)
                       +.+....++++.++++.++|.+     ..++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.++++|+
T Consensus       393 -~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~  471 (520)
T TIGR03269       393 -ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSIL  471 (520)
T ss_pred             -CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence             3333334567889999999975     5789999999999999999999999999999999999999999999999999


Q ss_pred             HHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         475 RAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       475 ~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      +++++ |.|||++|||++++..+|||+++|++|+++..|+++++.+.
T Consensus       472 ~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  518 (520)
T TIGR03269       472 KAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVEE  518 (520)
T ss_pred             HHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence            99765 89999999999999999999999999999999999988654

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=1.3e-63  Score=555.88  Aligned_cols=376  Identities=20%  Similarity=0.318  Sum_probs=301.3

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      +..+++|++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++...
T Consensus        11 ~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~liG~NGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~~~~~   78 (510)
T PRK15439         11 LLCARSISKQYSG----VEVLKGIDFTLHAGEVHALLGGNGA--GKSTL------MKIIAGIVPPDSGTLEIGGNPCARL   78 (510)
T ss_pred             eEEEEeEEEEeCC----ceeeeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCceEEEECCEECCCC
Confidence            4568999999864    3599999999988      999999  56665      5799999999999999999987542


Q ss_pred             -hHH-hcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh
Q psy7365         123 -MTT-IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       123 -~~~-~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                       ... .+..+||+||++.+|+++||.||+.|+...    ..+.++++.++++.+||.+..++++.+||||||||+++||+
T Consensus        79 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a  154 (510)
T PRK15439         79 TPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK----RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRG  154 (510)
T ss_pred             CHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc----chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHH
Confidence             222 335799999999999999999999886432    23345678899999999999999999999999999986543


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      |                                      +.+                                   |++
T Consensus       155 L--------------------------------------~~~-----------------------------------p~l  161 (510)
T PRK15439        155 L--------------------------------------MRD-----------------------------------SRI  161 (510)
T ss_pred             H--------------------------------------HcC-----------------------------------CCE
Confidence            3                                      232                                   589


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc---------
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL---------  351 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL---------  351 (601)
                      |||||||+|||+.++..++++|+++.     .+|+|||++|||++++..+||++++|.+|+++..+....+         
T Consensus       162 llLDEPt~~LD~~~~~~l~~~l~~~~-----~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~  236 (510)
T PRK15439        162 LILDEPTASLTPAETERLFSRIRELL-----AQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDDIIQAI  236 (510)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHH-----HCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHHHHHHH
Confidence            99999999999999999999999873     3589999999999999999999999999998654422100         


Q ss_pred             -----------------------ccc-ccc----------------------cc---cccc-------------------
Q psy7365         352 -----------------------KNS-FAR----------------------GY---YLSL-------------------  363 (601)
Q Consensus       352 -----------------------k~~-~g~----------------------g~---~igl-------------------  363 (601)
                                             ... .++                      |.   ++|.                   
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~  316 (510)
T PRK15439        237 TPAAREKSLSASQKLWLELPGNRRQQAAGAPVLTVEDLTGEGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR  316 (510)
T ss_pred             hCccccccccccccccccccccccccCCCCceEEEeCCCCCCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence                                   000 000                      00   0000                   


Q ss_pred             ---------ccCCcc----cccccccCCCCc---ccCCCCCHHHHHHHhHH--h-cCCChhHHHHHHHHHHHHcCCC-cc
Q psy7365         364 ---------DMKSAP----QKSYIGYCPQFD---ALNDRLTPREHLEFYSR--V-RNLPSVLLNTIVNESLNKFALG-HY  423 (601)
Q Consensus       364 ---------d~~~~~----~~~~ig~v~Q~~---~l~~~lTv~E~L~~~~~--~-~g~~~~~~~~~~~~lLe~~~L~-~~  423 (601)
                               ++....    .++.++|+||++   .+++.+|+.+|+.+...  . ........++.++++++.++|. +.
T Consensus       317 ~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~  396 (510)
T PRK15439        317 GGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNH  396 (510)
T ss_pred             CcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCC
Confidence                     000000    124699999984   48888999999864311  1 1111222345688999999997 78


Q ss_pred             cccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEE
Q psy7365         424 SDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM  503 (601)
Q Consensus       424 ~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL  503 (601)
                      .++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.++++|++++++|.|||++|||+++++.+|||+++|
T Consensus       397 ~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l  476 (510)
T PRK15439        397 AEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVM  476 (510)
T ss_pred             ccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence            89999999999999999999999999999999999999999999999999999888999999999999999999999999


Q ss_pred             eCCEEEEecCHHHHH
Q psy7365         504 VNGQFTCLGSATHLK  518 (601)
Q Consensus       504 ~~G~iv~~G~~~~L~  518 (601)
                      ++|++++.|+++++.
T Consensus       477 ~~G~i~~~~~~~~~~  491 (510)
T PRK15439        477 HQGEISGALTGAAIN  491 (510)
T ss_pred             ECCEEEEEEccccCC
Confidence            999999999887543

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=5.6e-63  Score=549.55  Aligned_cols=376  Identities=20%  Similarity=0.290  Sum_probs=298.8

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCC--CeeEEEEccccCCC
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPV--SSGTAKIYDHDIRT  121 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~--~~G~v~~~g~~~~~  121 (601)
                      ..++||++.|++    .++++|+||++.+      +|||||  |||||      .++|+|+++|  ++|+|.++|.++..
T Consensus         2 l~i~~l~~~~~~----~~il~~isl~i~~Ge~~~liG~nGs--GKSTL------l~~i~G~~~~~~~~G~i~~~g~~~~~   69 (500)
T TIGR02633         2 LEMKGIVKTFGG----VKALDGIDLEVRPGECVGLCGENGA--GKSTL------MKILSGVYPHGTWDGEIYWSGSPLKA   69 (500)
T ss_pred             EEEEeEEEEeCC----eEeecceEEEEeCCcEEEEECCCCC--CHHHH------HHHHhCCCCCCCCCeEEEECCEECCC
Confidence            347899999863    4599999999988      999999  57665      6799999997  79999999998854


Q ss_pred             c-h-HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhc--C--CChHHHHHHHHHHHHHcCCCccc-CCccccCChHHHhh
Q psy7365         122 D-M-TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK--Q--VPKDLAQLEISNMIGDLGIPHKR-TSLANTLSGGMQRK  194 (601)
Q Consensus       122 ~-~-~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~--~--~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgG~~qr  194 (601)
                      . . ...++.+||+||++.+|+.+||.||+.|+....  +  .+.++.+.++.++++.+|+.+.. ++++.+||||||||
T Consensus        70 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qr  149 (500)
T TIGR02633        70 SNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQL  149 (500)
T ss_pred             CCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHH
Confidence            2 2 223567999999999999999999999875432  1  33445567788999999998764 67899999999999


Q ss_pred             hhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhc
Q psy7365         195 LDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMS  274 (601)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  274 (601)
                      |++||||                                      +.+                                
T Consensus       150 v~iA~al--------------------------------------~~~--------------------------------  159 (500)
T TIGR02633       150 VEIAKAL--------------------------------------NKQ--------------------------------  159 (500)
T ss_pred             HHHHHHH--------------------------------------hhC--------------------------------
Confidence            9865433                                      222                                


Q ss_pred             cCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc----
Q psy7365         275 FVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF----  350 (601)
Q Consensus       275 ~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l----  350 (601)
                         |+++||||||+|||+.++..++++|+++.     ..|+|||++|||++++..+||++++|.+|+++..+.+..    
T Consensus       160 ---p~lllLDEPt~~LD~~~~~~l~~~l~~l~-----~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  231 (500)
T TIGR02633       160 ---ARLLILDEPSSSLTEKETEILLDIIRDLK-----AHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSED  231 (500)
T ss_pred             ---CCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCCHH
Confidence               58999999999999999999999999873     358999999999999999999999999999864332100    


Q ss_pred             --------------------------cc--c---cc---ccccc----------------c---------------cc--
Q psy7365         351 --------------------------LK--N---SF---ARGYY----------------L---------------SL--  363 (601)
Q Consensus       351 --------------------------Lk--~---~~---g~g~~----------------i---------------gl--  363 (601)
                                                ++  +   .+   +....                +               |.  
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~  311 (500)
T TIGR02633       232 DIITMMVGREITSLYPHEPHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP  311 (500)
T ss_pred             HHHHHHhCccccccccccccCCCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC
Confidence                                      00  0   00   00000                0               00  


Q ss_pred             ------------ccCCc----ccccccccCCCCc---ccCCCCCHHHHHHHhHH--hc---CCChhHHHHHHHHHHHHcC
Q psy7365         364 ------------DMKSA----PQKSYIGYCPQFD---ALNDRLTPREHLEFYSR--VR---NLPSVLLNTIVNESLNKFA  419 (601)
Q Consensus       364 ------------d~~~~----~~~~~ig~v~Q~~---~l~~~lTv~E~L~~~~~--~~---g~~~~~~~~~~~~lLe~~~  419 (601)
                                  ++...    ..++++||+||++   .+++.+|+++|+.+...  +.   +......++++.++++.++
T Consensus       312 p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  391 (500)
T TIGR02633       312 GKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLK  391 (500)
T ss_pred             CCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcC
Confidence                        00000    0135699999996   58889999999977421  11   1222334566889999999


Q ss_pred             CCc-ccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCC
Q psy7365         420 LGH-YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT  498 (601)
Q Consensus       420 L~~-~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~d  498 (601)
                      +.+ ..++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.++++|++++++|.|||++|||++++..+||
T Consensus       392 l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d  471 (500)
T TIGR02633       392 VKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSD  471 (500)
T ss_pred             ccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence            974 6899999999999999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             EEEEEeCCEEEEecCHH
Q psy7365         499 KLTIMVNGQFTCLGSAT  515 (601)
Q Consensus       499 rv~iL~~G~iv~~G~~~  515 (601)
                      |+++|++|++++.++.+
T Consensus       472 ~v~~l~~G~i~~~~~~~  488 (500)
T TIGR02633       472 RVLVIGEGKLKGDFVNH  488 (500)
T ss_pred             EEEEEECCEEEEEEccc
Confidence            99999999999877644

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-62  Score=546.32  Aligned_cols=373  Identities=20%  Similarity=0.294  Sum_probs=294.9

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc--h
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD--M  123 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~--~  123 (601)
                      ++||++.|++    .++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|+++...  .
T Consensus         1 ~~nl~~~~~~----~~il~~vs~~i~~Ge~~~liG~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~~~~~~~~   68 (491)
T PRK10982          1 MSNISKSFPG----VKALDNVNLKVRPHSIHALMGENGA--GKSTL------LKCLFGIYQKDSGSILFQGKEIDFKSSK   68 (491)
T ss_pred             CCceEEEeCC----EEeeeeeeEEEcCCcEEEEECCCCC--CHHHH------HHHHcCCCCCCceEEEECCEECCCCCHH
Confidence            4688998853    4599999999988      999999  56665      5799999999999999999987532  2


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHh-hcC--CChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ-LKQ--VPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~-~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                      ...++.+||+||++.+++.+||.||+.|+.. ..+  .+..+..+++.++++.+|+.+..++++.+|||||||||++||+
T Consensus        69 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~a  148 (491)
T PRK10982         69 EALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKA  148 (491)
T ss_pred             HHHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHH
Confidence            3346789999999999999999999987642 122  2344455678899999999998999999999999999986543


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      |                                      +.+                                   |++
T Consensus       149 l--------------------------------------~~~-----------------------------------p~l  155 (491)
T PRK10982        149 F--------------------------------------SYN-----------------------------------AKI  155 (491)
T ss_pred             H--------------------------------------HhC-----------------------------------CCE
Confidence            2                                      222                                   589


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc---------
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL---------  351 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL---------  351 (601)
                      |||||||+|||+.++..++++|+++.     ..|+|||++||+++++..+||++++|.+|+++..+++...         
T Consensus       156 llLDEPt~~LD~~~~~~l~~~l~~l~-----~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~  230 (491)
T PRK10982        156 VIMDEPTSSLTEKEVNHLFTIIRKLK-----ERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMDKIIAMM  230 (491)
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHH-----hCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHHHHHHHH
Confidence            99999999999999999999999873     3589999999999999999999999999998654421000         


Q ss_pred             ---------c--cc-cc-------------------------cc-------------------------------ccccc
Q psy7365         352 ---------K--NS-FA-------------------------RG-------------------------------YYLSL  363 (601)
Q Consensus       352 ---------k--~~-~g-------------------------~g-------------------------------~~igl  363 (601)
                               .  .. ..                         .|                               ++.+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~  310 (491)
T PRK10982        231 VGRSLTQRFPDKENKPGEVILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGK  310 (491)
T ss_pred             hCCCcccccccccCCCCCcEEEEeCcccccCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCE
Confidence                     0  00 00                         00                               00000


Q ss_pred             ccCCcc----cccccccCCCCc---ccCCCCCHHHH-----HHHhHHhcCC-ChhHHHHHHHHHHHHcCCC-cccccccC
Q psy7365         364 DMKSAP----QKSYIGYCPQFD---ALNDRLTPREH-----LEFYSRVRNL-PSVLLNTIVNESLNKFALG-HYSDREVR  429 (601)
Q Consensus       364 d~~~~~----~~~~ig~v~Q~~---~l~~~lTv~E~-----L~~~~~~~g~-~~~~~~~~~~~lLe~~~L~-~~~~~~~~  429 (601)
                      +.....    .++.+||+||++   .+|+++|+.+|     +.++...++. .....++.+.++++.+++. +..++++.
T Consensus       311 ~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  390 (491)
T PRK10982        311 KINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIG  390 (491)
T ss_pred             ECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccc
Confidence            010000    134489999985   47888888776     3322222232 2233456678899999995 56899999


Q ss_pred             cCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEE
Q psy7365         430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT  509 (601)
Q Consensus       430 ~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv  509 (601)
                      +|||||||||+||+|++.+|++|||||||+|||+.+++.++++|+++.++|.|||++|||++++..+|||+++|++|+++
T Consensus       391 ~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~  470 (491)
T PRK10982        391 SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVA  470 (491)
T ss_pred             cCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEE
Confidence            99999999999999999999999999999999999999999999999888999999999999999999999999999999


Q ss_pred             EecCH
Q psy7365         510 CLGSA  514 (601)
Q Consensus       510 ~~G~~  514 (601)
                      ..++.
T Consensus       471 ~~~~~  475 (491)
T PRK10982        471 GIVDT  475 (491)
T ss_pred             EEEcc
Confidence            77654

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=2.5e-61  Score=590.15  Aligned_cols=226  Identities=49%  Similarity=0.846  Sum_probs=198.0

Q ss_pred             ccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEE
Q psy7365         373 YIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLI  452 (601)
Q Consensus       373 ~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lL  452 (601)
                      .||||||++.+++.+|++|++.+++.+++.+.++.++.++++++.++|.+..++++++|||||||||+||+||+++|+++
T Consensus      2013 ~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VL 2092 (2272)
T TIGR01257      2013 NMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLV 2092 (2272)
T ss_pred             hEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            37899999999999999999999988888876666677889999999999999999999999999999999999999999


Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHhCCceEEEEEec
Q psy7365         453 FLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCA  532 (601)
Q Consensus       453 lLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~~~~~~l~i~~~  532 (601)
                      ||||||+||||.+++.+|++|++++++|+|||++||+++|++++|||+++|++|++++.|++++++++++.+|.++++++
T Consensus      2093 LLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g~g~~l~i~~~ 2172 (2272)
T TIGR01257      2093 LLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTMKIK 2172 (2272)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhCCceEEEEEEc
Confidence            99999999999999999999999987899999999999999999999999999999999999999999999998888775


Q ss_pred             CCCc------hhHHHHHhhcCCCceeEEeeCcEEEEEEcCCcccHHHHHHHHHHccccCCCeeEEEecCCCCCCC
Q psy7365         533 EGRS------ADAQTYLSLNLPVADLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLEDS  601 (601)
Q Consensus       533 ~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~i~~~~v~~~sLEdv  601 (601)
                      ....      +.+..++...+|+....+.+.+.+++.++..  ..+++++.+++++.+++ |.+|+++++|||||
T Consensus      2173 ~~~~~~~~~~~~v~~~i~~~fp~a~~~e~~~~~l~~~i~~~--~~~~if~~L~~~k~~l~-I~dysvsqtSLE~V 2244 (2272)
T TIGR01257      2173 SPKDDLLPDLNPVEQFFQGNFPGSVQRERHYNMLQFQVSSS--SLARIFQLLISHKDSLL-IEEYSVTQTTLDQV 2244 (2272)
T ss_pred             CcchhhhhHHHHHHHHHhhcCccceeeccccceEEEEeCcc--cHHHHHHHHHhcCCCCC-eEEEEcCCCCHHHH
Confidence            3211      1233445556787665565667778888643  68899999988766677 99999999999986

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.9e-62  Score=528.42  Aligned_cols=380  Identities=21%  Similarity=0.341  Sum_probs=315.4

Q ss_pred             ccchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEcccc
Q psy7365          45 MGAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHD  118 (601)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~  118 (601)
                      +..++..++|++|+|+..    +||+|+||++.+      +|-|||  |||||      +|+|+|.++|++|+|.++|++
T Consensus         4 ~~~~ll~~~~i~K~FggV----~AL~~v~l~v~~GEV~aL~GeNGA--GKSTL------mKiLsGv~~p~~G~I~~~G~~   71 (500)
T COG1129           4 STPPLLELRGISKSFGGV----KALDGVSLTVRPGEVHALLGENGA--GKSTL------MKILSGVYPPDSGEILIDGKP   71 (500)
T ss_pred             CccceeeeecceEEcCCc----eeeccceeEEeCceEEEEecCCCC--CHHHH------HHHHhCcccCCCceEEECCEE
Confidence            345567799999999754    599999999998      999999  67766      789999999999999999998


Q ss_pred             CC--CchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcC----CChHHHHHHHHHHHHHcCCCcccCCccccCChHHH
Q psy7365         119 IR--TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ----VPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQ  192 (601)
Q Consensus       119 ~~--~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~  192 (601)
                      +.  ++..+...+|+.|+|+..++|++||.||+.++.+...    +++..+++++.++|+.+|+....+.++.+||+|||
T Consensus        72 ~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~Lsiaqr  151 (500)
T COG1129          72 VAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQR  151 (500)
T ss_pred             ccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHH
Confidence            85  3455667899999999999999999999998877543    67888999999999999997669999999999999


Q ss_pred             hhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHh
Q psy7365         193 RKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFA  272 (601)
Q Consensus       193 qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  272 (601)
                      |.|+||||+..                                                                     
T Consensus       152 Q~VeIArAl~~---------------------------------------------------------------------  162 (500)
T COG1129         152 QMVEIARALSF---------------------------------------------------------------------  162 (500)
T ss_pred             HHHHHHHHHhc---------------------------------------------------------------------
Confidence            99987654332                                                                     


Q ss_pred             hccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc-cc-
Q psy7365         273 MSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS-VF-  350 (601)
Q Consensus       273 ~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~-~l-  350 (601)
                          +++++|||||||+|+..+.+.++++++++     +.+|.++|++||+++|+.++|||+.||++|+.+.+... .. 
T Consensus       163 ----~arllIlDEPTaaLt~~E~~~Lf~~ir~L-----k~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~  233 (500)
T COG1129         163 ----DARVLILDEPTAALTVKETERLFDLIRRL-----KAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAET  233 (500)
T ss_pred             ----CCCEEEEcCCcccCCHHHHHHHHHHHHHH-----HhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCC
Confidence                25899999999999999999999999999     46799999999999999999999999999998765541 10 


Q ss_pred             ------------------cc-cc--cc-----------------------cccccc------------------cc----
Q psy7365         351 ------------------LK-NS--FA-----------------------RGYYLS------------------LD----  364 (601)
Q Consensus       351 ------------------Lk-~~--~g-----------------------~g~~ig------------------ld----  364 (601)
                                        .. ..  .+                       .|-++|                  .+    
T Consensus       234 ~~~~lv~~MvGr~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~  313 (500)
T COG1129         234 SEDELVRLMVGRELEDLFPEPPEEGIGEPVLEVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASS  313 (500)
T ss_pred             CHHHHHHHhhCcchhhhcccccccCCCCcEEEEecCCCCCceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCC
Confidence                              00 00  00                       000000                  00    


Q ss_pred             ------cC-------CcccccccccCCCC---cccCCCCCHHHHHHHhH--Hhc---CCChhHHHHHHHHHHHHcCCC-c
Q psy7365         365 ------MK-------SAPQKSYIGYCPQF---DALNDRLTPREHLEFYS--RVR---NLPSVLLNTIVNESLNKFALG-H  422 (601)
Q Consensus       365 ------~~-------~~~~~~~ig~v~Q~---~~l~~~lTv~E~L~~~~--~~~---g~~~~~~~~~~~~lLe~~~L~-~  422 (601)
                            .+       ....+..|+|||+|   .+++..+++.+|+.+..  ++.   -+.....++.++++.+.+++. .
T Consensus       314 G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~  393 (500)
T COG1129         314 GEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTP  393 (500)
T ss_pred             ceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccC
Confidence                  00       01123569999998   46899999999998762  111   133444556788999999995 5


Q ss_pred             ccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEE
Q psy7365         423 YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTI  502 (601)
Q Consensus       423 ~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~i  502 (601)
                      ..+.++.+||||+||||.||++|+.+|++|||||||.|+|..++.+++++|++++++|++||++|.+++|+..+||||++
T Consensus       394 s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlV  473 (500)
T COG1129         394 SPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILV  473 (500)
T ss_pred             CccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEE
Confidence            66789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCEEEEecCH
Q psy7365         503 MVNGQFTCLGSA  514 (601)
Q Consensus       503 L~~G~iv~~G~~  514 (601)
                      |++|+++.+-+.
T Consensus       474 m~~Gri~~e~~~  485 (500)
T COG1129         474 MREGRIVGELDR  485 (500)
T ss_pred             EECCEEEEEecc
Confidence            999999885443

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=8.5e-61  Score=495.34  Aligned_cols=396  Identities=22%  Similarity=0.333  Sum_probs=328.0

Q ss_pred             ccchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCC-----CeeEEE
Q psy7365          45 MGAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPV-----SSGTAK  113 (601)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~-----~~G~v~  113 (601)
                      |..++..++||+..|+..++...+++|+||++.+      .|-||+  |||     -|+ ..|+|++|.     -+|+|.
T Consensus         2 ~~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGS--GKS-----vTa-~sim~LLp~~~~~~~sg~i~   73 (534)
T COG4172           2 MTMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGS--GKS-----VTA-LSILGLLPSPAAAHPSGSIL   73 (534)
T ss_pred             CCCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCC--Ccc-----HHH-HHHHHhcCCCcccCccceeE
Confidence            3456677999999999999999999999999988      999999  455     444 477899875     489999


Q ss_pred             EccccCCCc-hH---Hhc-ccEEEEccCC--CCCCCCCHHHHHHHhHhh-cCCChHHHHHHHHHHHHHcCCCcc---cCC
Q psy7365         114 IYDHDIRTD-MT---TIR-RSLGVCPQYN--ALFDKLTVEEHMWFYSQL-KQVPKDLAQLEISNMIGDLGIPHK---RTS  182 (601)
Q Consensus       114 ~~g~~~~~~-~~---~~~-~~ig~v~Q~~--~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~---~~~  182 (601)
                      ++|.++... ..   .+| ++|+++||+|  ++.|-.|+..++.-...+ .|+.+..++.|+.++|+.+||.+.   .++
T Consensus        74 f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~  153 (534)
T COG4172          74 FDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDA  153 (534)
T ss_pred             EcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhh
Confidence            999998542 22   233 5799999998  588889999999876665 478899999999999999999863   689


Q ss_pred             ccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcch
Q psy7365         183 LANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTS  262 (601)
Q Consensus       183 ~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  262 (601)
                      +|++|||||+|||.||.|                                      ++++                    
T Consensus       154 yPHeLSGGqRQRVMIAMA--------------------------------------Lan~--------------------  175 (534)
T COG4172         154 YPHELSGGQRQRVMIAMA--------------------------------------LANE--------------------  175 (534)
T ss_pred             CCcccCcchhhHHHHHHH--------------------------------------HcCC--------------------
Confidence            999999999999875332                                      3344                    


Q ss_pred             hHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcc
Q psy7365         263 ILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL  342 (601)
Q Consensus       263 ~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkI  342 (601)
                                     |++||-||||++||..-+.++.++|++++    ++.|.+++++|||+..+.+++|||++|.+|++
T Consensus       176 ---------------P~lLIADEPTTALDVtvQaQIL~Ll~~Lq----~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~i  236 (534)
T COG4172         176 ---------------PDLLIADEPTTALDVTVQAQILDLLKELQ----AELGMAILFITHDLGIVRKFADRVYVMQHGEI  236 (534)
T ss_pred             ---------------CCeEeecCCcchhhhhhHHHHHHHHHHHH----HHhCcEEEEEeccHHHHHHhhhhEEEEeccEE
Confidence                           59999999999999999999999999995    35699999999999999999999999999999


Q ss_pred             ccccCccc--------------------------------c-----------cccc------------------------
Q psy7365         343 QCCGSSVF--------------------------------L-----------KNSF------------------------  355 (601)
Q Consensus       343 v~~G~~~l--------------------------------L-----------k~~~------------------------  355 (601)
                      +..+....                                +           +..+                        
T Consensus       237 vE~~~t~~lF~~PqHpYTr~Ll~aeP~g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTl  316 (534)
T COG4172         237 VETGTTETLFAAPQHPYTRKLLAAEPSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTL  316 (534)
T ss_pred             eecCcHHHHhhCCCChHHHHHHhcCCCCCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeE
Confidence            87663210                                0           0000                        


Q ss_pred             ------c------------------cccccccccC------CcccccccccCCCCc--ccCCCCCHHHHHHHhHHhcC--
Q psy7365         356 ------A------------------RGYYLSLDMK------SAPQKSYIGYCPQFD--ALNDRLTPREHLEFYSRVRN--  401 (601)
Q Consensus       356 ------g------------------~g~~igld~~------~~~~~~~ig~v~Q~~--~l~~~lTv~E~L~~~~~~~g--  401 (601)
                            |                  ..++.|.++.      -.+.|+++-+|||||  ++.|.|||.+.+.-....+.  
T Consensus       317 GlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~  396 (534)
T COG4172         317 GLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPK  396 (534)
T ss_pred             EEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCC
Confidence                  0                  0001111111      123467899999998  48899999999887766654  


Q ss_pred             CChhHHHHHHHHHHHHcCCC-cccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-
Q psy7365         402 LPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-  479 (601)
Q Consensus       402 ~~~~~~~~~~~~lLe~~~L~-~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~-  479 (601)
                      .+..+..+++.++|+.+||+ ..++|+|.++|||||||++||||++.+|++++||||||.||..-+.++.++++++.++ 
T Consensus       397 ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~  476 (534)
T COG4172         397 LSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKH  476 (534)
T ss_pred             CCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHh
Confidence            45667778899999999997 5789999999999999999999999999999999999999999999999999999755 


Q ss_pred             CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHhCCce
Q psy7365         480 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGY  525 (601)
Q Consensus       480 G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~~~~~  525 (601)
                      |.+.+++|||+..+.++||+|++|++|+|+..|+.+++.......|
T Consensus       477 ~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~Y  522 (534)
T COG4172         477 GLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEY  522 (534)
T ss_pred             CCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHH
Confidence            9999999999999999999999999999999999999987654443

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=2.3e-59  Score=519.36  Aligned_cols=364  Identities=23%  Similarity=0.246  Sum_probs=281.5

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      ..+++|++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. .
T Consensus         4 l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~liG~nGs--GKSTL------l~~l~G~~~p~~G~i~~~~~~~~~~~   71 (490)
T PRK10938          4 LQISQGTFRLSD----TKTLQLPSLTLNAGDSWAFVGANGS--GKSAL------ARALAGELPLLSGERQSQFSHITRLS   71 (490)
T ss_pred             EEEEeEEEEcCC----eeecccceEEEcCCCEEEEECCCCC--CHHHH------HHHHhccCCCCCceEEECCcccccCC
Confidence            558999999864    3499999999988      999999  56665      579999999999999999987643 2


Q ss_pred             hHHhcccEEEEccCCCC--C------CCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhh
Q psy7365         123 MTTIRRSLGVCPQYNAL--F------DKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRK  194 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~--~------~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr  194 (601)
                      ....++.+||+||++..  +      ..+||.|++.+.        ...++++.++++.+||.+..++++.+||||||||
T Consensus        72 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr  143 (490)
T PRK10938         72 FEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRK  143 (490)
T ss_pred             HHHHHHHhceeccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHH
Confidence            33345679999998753  2      157888887542        1234678899999999999999999999999999


Q ss_pred             hhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhc
Q psy7365         195 LDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMS  274 (601)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  274 (601)
                      +++|+|+                                      +.+                                
T Consensus       144 v~la~al--------------------------------------~~~--------------------------------  153 (490)
T PRK10938        144 TLLCQAL--------------------------------------MSE--------------------------------  153 (490)
T ss_pred             HHHHHHH--------------------------------------HcC--------------------------------
Confidence            9854432                                      233                                


Q ss_pred             cCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc----
Q psy7365         275 FVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF----  350 (601)
Q Consensus       275 ~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l----  350 (601)
                         |++|||||||+|||+.+++.++++|+++.     .+|+|||++||+++++.++||++++|.+|+++..+.+..    
T Consensus       154 ---p~lllLDEPt~~LD~~~~~~l~~~l~~~~-----~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~  225 (490)
T PRK10938        154 ---PDLLILDEPFDGLDVASRQQLAELLASLH-----QSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ  225 (490)
T ss_pred             ---CCEEEEcCCcccCCHHHHHHHHHHHHHHH-----hcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence               58999999999999999999999999873     358999999999999999999999999999865432100    


Q ss_pred             -----------cc----------------c-------------cccc-------------cc------------------
Q psy7365         351 -----------LK----------------N-------------SFAR-------------GY------------------  359 (601)
Q Consensus       351 -----------Lk----------------~-------------~~g~-------------g~------------------  359 (601)
                                 +.                .             .++.             |.                  
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~  305 (490)
T PRK10938        226 ALVAQLAHSEQLEGVQLPEPDEPSARHALPANEPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSL  305 (490)
T ss_pred             hhhhhhhhhhccCccccCcccccccccccCCCCceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHH
Confidence                       00                0             0000             00                  


Q ss_pred             ccccccC--------------Cc----ccccccccCCCCcccCC--CCCHHHHHHHhHH----hcCCChhHHHHHHHHHH
Q psy7365         360 YLSLDMK--------------SA----PQKSYIGYCPQFDALND--RLTPREHLEFYSR----VRNLPSVLLNTIVNESL  415 (601)
Q Consensus       360 ~igld~~--------------~~----~~~~~ig~v~Q~~~l~~--~lTv~E~L~~~~~----~~g~~~~~~~~~~~~lL  415 (601)
                      ..|....              ..    ..++++||++|++.++.  ..++.+++.+...    .+.......++++++++
T Consensus       306 l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  385 (490)
T PRK10938        306 ITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWL  385 (490)
T ss_pred             HcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHH
Confidence            0000000              00    01356999999876543  3467666543211    11111223345688999


Q ss_pred             HHcCCCc-ccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEccChhHH
Q psy7365         416 NKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEG-RCVILTSHNMEEC  493 (601)
Q Consensus       416 e~~~L~~-~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G-~tVllsTHdl~e~  493 (601)
                      +.++|.+ ..++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.++++|++++++| .|||++|||++++
T Consensus       386 ~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~  465 (490)
T PRK10938        386 DILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDA  465 (490)
T ss_pred             HHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhh
Confidence            9999987 8899999999999999999999999999999999999999999999999999998775 4799999999999


Q ss_pred             Hh-hCCEEEEEeCCEEEEe
Q psy7365         494 EA-LCTKLTIMVNGQFTCL  511 (601)
Q Consensus       494 ~~-l~drv~iL~~G~iv~~  511 (601)
                      .. +|||+++|++|+++..
T Consensus       466 ~~~~~d~v~~l~~G~i~~~  484 (490)
T PRK10938        466 PACITHRLEFVPDGDIYRY  484 (490)
T ss_pred             hhhhheeEEEecCCceEEe
Confidence            87 6999999999998765

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=100.00  E-value=9.7e-59  Score=493.10  Aligned_cols=379  Identities=24%  Similarity=0.374  Sum_probs=319.9

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCC-
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIR-  120 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~-  120 (601)
                      ++..+++++|.|+    +..|.+||||++.+      ||-|||  |||||      ++||.|+++|++|+|.++|+++. 
T Consensus         3 ~~l~~~~itK~f~----~~~And~V~l~v~~GeIHaLLGENGA--GKSTL------m~iL~G~~~P~~GeI~v~G~~v~~   70 (501)
T COG3845           3 PALEMRGITKRFP----GVVANDDVSLSVKKGEIHALLGENGA--GKSTL------MKILFGLYQPDSGEIRVDGKEVRI   70 (501)
T ss_pred             ceEEEeccEEEcC----CEEecCceeeeecCCcEEEEeccCCC--CHHHH------HHHHhCcccCCcceEEECCEEecc
Confidence            4456899999997    45599999999988      999999  67776      78999999999999999999874 


Q ss_pred             -CchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhc---CCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhh
Q psy7365         121 -TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK---QVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD  196 (601)
Q Consensus       121 -~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~  196 (601)
                       .+.++++.+||+|+|++.+++.+||.||+.++.+..   .++..+.++++.++.+++||+-..++++.+||-||||||.
T Consensus        71 ~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVE  150 (501)
T COG3845          71 KSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVE  150 (501)
T ss_pred             CCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHH
Confidence             567778899999999999999999999999988642   3577888999999999999999999999999999999999


Q ss_pred             chhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccC
Q psy7365         197 NVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFV  276 (601)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  276 (601)
                      |.|+||.+                                                                        
T Consensus       151 IlKaLyr~------------------------------------------------------------------------  158 (501)
T COG3845         151 ILKALYRG------------------------------------------------------------------------  158 (501)
T ss_pred             HHHHHhcC------------------------------------------------------------------------
Confidence            87766544                                                                        


Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc-c-----
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV-F-----  350 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~-l-----  350 (601)
                       |++|||||||+-|.|.+.+++++.++++     +.+|+|||++||.++|+.++|||+.+|+.|+++....+. .     
T Consensus       159 -a~iLILDEPTaVLTP~E~~~lf~~l~~l-----~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~~~~~t~~e  232 (501)
T COG3845         159 -ARLLILDEPTAVLTPQEADELFEILRRL-----AAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVAETTEEE  232 (501)
T ss_pred             -CCEEEEcCCcccCCHHHHHHHHHHHHHH-----HHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecCCCCCCHHH
Confidence             5899999999999999999999999998     467999999999999999999999999999976433210 0     


Q ss_pred             -----------c---cc------------------c-------------------------------------------c
Q psy7365         351 -----------L---KN------------------S-------------------------------------------F  355 (601)
Q Consensus       351 -----------L---k~------------------~-------------------------------------------~  355 (601)
                                 .   +.                  .                                           .
T Consensus       233 la~lMvG~~v~~~~~~~~~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~  312 (501)
T COG3845         233 LAELMVGREVVLRVVKPPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPAS  312 (501)
T ss_pred             HHHHhcCCccccccccCCCCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCC
Confidence                       0   00                  0                                           0


Q ss_pred             cccccccccc-CCcc----cccccccCCCCc---ccCCCCCHHHHHHHhHHh------cC-CChhHHHHHHHHHHHHcCC
Q psy7365         356 ARGYYLSLDM-KSAP----QKSYIGYCPQFD---ALNDRLTPREHLEFYSRV------RN-LPSVLLNTIVNESLNKFAL  420 (601)
Q Consensus       356 g~g~~igld~-~~~~----~~~~ig~v~Q~~---~l~~~lTv~E~L~~~~~~------~g-~~~~~~~~~~~~lLe~~~L  420 (601)
                      ++....+.++ ....    .+..+||+|+|.   ++.+++|+.||+.+....      ++ +.+....+.+.+++++|++
T Consensus       313 G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdV  392 (501)
T COG3845         313 GRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDV  392 (501)
T ss_pred             ceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCc
Confidence            0000111121 0001    134699999985   588999999999774321      12 4566778889999999999


Q ss_pred             C-cccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCE
Q psy7365         421 G-HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTK  499 (601)
Q Consensus       421 ~-~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~dr  499 (601)
                      . .-.+.++.+||||++||+-+||-|..+|++||..+||.|||..+.+.+.+.|.+.+++|++|+++|-|++|+..+|||
T Consensus       393 r~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDr  472 (501)
T COG3845         393 RAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDR  472 (501)
T ss_pred             cCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhhe
Confidence            6 556778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCEEEEecCHHH
Q psy7365         500 LTIMVNGQFTCLGSATH  516 (601)
Q Consensus       500 v~iL~~G~iv~~G~~~~  516 (601)
                      |.+|.+|+++...++++
T Consensus       473 IaVi~~Gri~~~~~~~~  489 (501)
T COG3845         473 IAVIYEGRIVGIVPPEE  489 (501)
T ss_pred             eeeeeCCceeccccccc
Confidence            99999999998887765

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-57  Score=507.60  Aligned_cols=359  Identities=20%  Similarity=0.282  Sum_probs=282.0

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchH
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMT  124 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~  124 (601)
                      .++||++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.       
T Consensus         3 ~i~~ls~~~~~----~~il~~vsl~i~~Ge~~~liG~NGs--GKSTL------l~~l~Gl~~p~~G~i~~~~~-------   63 (530)
T PRK15064          3 STANITMQFGA----KPLFENISVKFGGGNRYGLIGANGC--GKSTF------MKILGGDLEPSAGNVSLDPN-------   63 (530)
T ss_pred             EEEEEEEEeCC----cEeEeCCEEEECCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCceEEecCC-------
Confidence            47899999853    3599999999988      999999  67765      67999999999999999873       


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHh-h----------cCCC---------------------hHHHHHHHHHHHH
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQ-L----------KQVP---------------------KDLAQLEISNMIG  172 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~-~----------~~~~---------------------~~~~~~~~~~~l~  172 (601)
                         ..+||+||++.+|+.+||.||+.++.. .          .+.+                     ..+.+.++.++++
T Consensus        64 ---~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  140 (530)
T PRK15064         64 ---ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLL  140 (530)
T ss_pred             ---CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence               359999999999999999999987431 0          0110                     0123457889999


Q ss_pred             HcCCCcc-cCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHH
Q psy7365         173 DLGIPHK-RTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQM  251 (601)
Q Consensus       173 ~~gl~~~-~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~  251 (601)
                      .+|+.+. .++++.+||||||||+++|++|                                      +.          
T Consensus       141 ~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL--------------------------------------~~----------  172 (530)
T PRK15064        141 GVGIPEEQHYGLMSEVAPGWKLRVLLAQAL--------------------------------------FS----------  172 (530)
T ss_pred             hCCCChhHhcCchhhcCHHHHHHHHHHHHH--------------------------------------hc----------
Confidence            9999864 4678999999999999854432                                      22          


Q ss_pred             HHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcC
Q psy7365         252 ALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLG  331 (601)
Q Consensus       252 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~  331 (601)
                                               +|++|||||||++||+.++..+.++|.+        .|.|||++|||++++..+|
T Consensus       173 -------------------------~p~lLlLDEPt~~LD~~~~~~l~~~l~~--------~~~tiiivsHd~~~~~~~~  219 (530)
T PRK15064        173 -------------------------NPDILLLDEPTNNLDINTIRWLEDVLNE--------RNSTMIIISHDRHFLNSVC  219 (530)
T ss_pred             -------------------------CCCEEEEcCCCcccCHHHHHHHHHHHHh--------CCCeEEEEeCCHHHHHhhc
Confidence                                     2589999999999999999999999863        3789999999999999999


Q ss_pred             CEEEEecCCccc-cccCcccc-------------------------------------------------------c--c
Q psy7365         332 DRIAIIAAGKLQ-CCGSSVFL-------------------------------------------------------K--N  353 (601)
Q Consensus       332 Drv~vL~~GkIv-~~G~~~lL-------------------------------------------------------k--~  353 (601)
                      |++++|++|+++ ..|.....                                                       .  .
T Consensus       220 d~i~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (530)
T PRK15064        220 THMADLDYGELRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQIDKIKLEEVKP  299 (530)
T ss_pred             ceEEEEeCCEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhhccccccCC
Confidence            999999999984 33311000                                                       0  0


Q ss_pred             -----cc---------cc----------cc--------------------cccccc--------------CCc------c
Q psy7365         354 -----SF---------AR----------GY--------------------YLSLDM--------------KSA------P  369 (601)
Q Consensus       354 -----~~---------g~----------g~--------------------~igld~--------------~~~------~  369 (601)
                           ..         ++          .|                    .+|.++              ...      .
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~  379 (530)
T PRK15064        300 SSRQNPFIRFEQDKKLHRNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWS  379 (530)
T ss_pred             ccccCceeeCCCCCCCCCceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence                 00         00          00                    000000              000      0


Q ss_pred             cccccccCCCCcc--cCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCC-cccccccCcCChHHHHHHHHHHHHh
Q psy7365         370 QKSYIGYCPQFDA--LNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALL  446 (601)
Q Consensus       370 ~~~~ig~v~Q~~~--l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~-~~~~~~~~~LSgGqkQRl~lA~AL~  446 (601)
                      .++++||+||++.  +++.+|+.+++.++.   . . ...++++.++++.+++. +..++++.+||||||||++||+||+
T Consensus       380 ~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~-~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~  454 (530)
T PRK15064        380 ENANIGYYAQDHAYDFENDLTLFDWMSQWR---Q-E-GDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMM  454 (530)
T ss_pred             CceEEEEEcccccccCCCCCcHHHHHHHhc---c-C-CccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHh
Confidence            1346999999864  566799999986532   1 1 11235678899999994 6789999999999999999999999


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEE-EecCHHHHHHH
Q psy7365         447 GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT-CLGSATHLKSK  520 (601)
Q Consensus       447 ~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv-~~G~~~~L~~~  520 (601)
                      .+|++|||||||+|||+.+++.+++.|+++   +.|||++|||++++..+|||+++|++|+++ ..|+++++.+.
T Consensus       455 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~  526 (530)
T PRK15064        455 QKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS  526 (530)
T ss_pred             cCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence            999999999999999999999999999886   459999999999999999999999999998 88999888654

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=3.3e-57  Score=509.30  Aligned_cols=366  Identities=21%  Similarity=0.233  Sum_probs=283.3

Q ss_pred             cchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccC
Q psy7365          46 GAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI  119 (601)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~  119 (601)
                      ..++..++||++.|++   +..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.+++.  
T Consensus         3 ~~~~l~i~~l~~~y~~---~~~il~~vs~~i~~Ge~~~iiG~NGs--GKSTL------lk~i~G~~~p~~G~i~~~~~--   69 (556)
T PRK11819          3 AQYIYTMNRVSKVVPP---KKQILKDISLSFFPGAKIGVLGLNGA--GKSTL------LRIMAGVDKEFEGEARPAPG--   69 (556)
T ss_pred             ccEEEEEeeEEEEeCC---CCeeeeCceEEECCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCceEEecCC--
Confidence            3445779999999862   25699999999988      999999  57665      67999999999999999752  


Q ss_pred             CCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhh--------------cCCCh----------------------HHH
Q psy7365         120 RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL--------------KQVPK----------------------DLA  163 (601)
Q Consensus       120 ~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~--------------~~~~~----------------------~~~  163 (601)
                              ..+|||||+|.+++.+||.||+.++...              .+.+.                      .+.
T Consensus        70 --------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (556)
T PRK11819         70 --------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDL  141 (556)
T ss_pred             --------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccch
Confidence                    3699999999999999999999875321              01110                      012


Q ss_pred             HHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCC
Q psy7365         164 QLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHP  243 (601)
Q Consensus       164 ~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p  243 (601)
                      ..++.++++.+|+.. .++++.+|||||||||++||+++                                      .+ 
T Consensus       142 ~~~~~~~l~~~gl~~-~~~~~~~LSgGqkqrv~la~al~--------------------------------------~~-  181 (556)
T PRK11819        142 DSQLEIAMDALRCPP-WDAKVTKLSGGERRRVALCRLLL--------------------------------------EK-  181 (556)
T ss_pred             HHHHHHHHHhCCCCc-ccCchhhcCHHHHHHHHHHHHHh--------------------------------------CC-
Confidence            456888999999964 79999999999999998654322                                      22 


Q ss_pred             cchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecc
Q psy7365         244 MNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHY  323 (601)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHd  323 (601)
                                                        |++|||||||++||+.++..+.+.|+++        +.|||++|||
T Consensus       182 ----------------------------------p~vlLLDEPt~~LD~~~~~~l~~~L~~~--------~~tviiisHd  219 (556)
T PRK11819        182 ----------------------------------PDMLLLDEPTNHLDAESVAWLEQFLHDY--------PGTVVAVTHD  219 (556)
T ss_pred             ----------------------------------CCEEEEcCCCCcCChHHHHHHHHHHHhC--------CCeEEEEeCC
Confidence                                              5899999999999999999999999875        2499999999


Q ss_pred             hhHHHhcCCEEEEecCCccc-cccCccc--------c-------------------------------------------
Q psy7365         324 MDEADLLGDRIAIIAAGKLQ-CCGSSVF--------L-------------------------------------------  351 (601)
Q Consensus       324 l~~~~~l~Drv~vL~~GkIv-~~G~~~l--------L-------------------------------------------  351 (601)
                      ++++..+||++++|++|+++ ..|....        .                                           
T Consensus       220 ~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (556)
T PRK11819        220 RYFLDNVAGWILELDRGRGIPWEGNYSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSPKARQAKSKARLARYEELL  299 (556)
T ss_pred             HHHHHhhcCeEEEEeCCEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Confidence            99999999999999999975 2221000        0                                           


Q ss_pred             ---------------ccc--ccc----------cc--------------------cccccc--------------CCc--
Q psy7365         352 ---------------KNS--FAR----------GY--------------------YLSLDM--------------KSA--  368 (601)
Q Consensus       352 ---------------k~~--~g~----------g~--------------------~igld~--------------~~~--  368 (601)
                                     ...  ..+          .|                    ++|.++              ...  
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G  379 (556)
T PRK11819        300 SEEYQKRNETNEIFIPPGPRLGDKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSG  379 (556)
T ss_pred             cccccccCCCceeecCCCCCCCCeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence                           000  000          00                    000000              000  


Q ss_pred             c--c--ccccccCCCCc-ccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCc-ccccccCcCChHHHHHHHHH
Q psy7365         369 P--Q--KSYIGYCPQFD-ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTA  442 (601)
Q Consensus       369 ~--~--~~~ig~v~Q~~-~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~-~~~~~~~~LSgGqkQRl~lA  442 (601)
                      .  .  ..++||+||++ .+++.+|+.||+.+.....+....  ...+..+++.+++.+ ..++++.+||||||||++||
T Consensus       380 ~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la  457 (556)
T PRK11819        380 TIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLA  457 (556)
T ss_pred             EEEECCceEEEEEeCchhhcCCCCCHHHHHHhhccccccccc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHH
Confidence            0  0  12589999996 688889999999876433332221  223557899999964 57999999999999999999


Q ss_pred             HHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeC-CEEE-EecCHHHHHH
Q psy7365         443 IALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVN-GQFT-CLGSATHLKS  519 (601)
Q Consensus       443 ~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~-G~iv-~~G~~~~L~~  519 (601)
                      +|++.+|++|||||||+|||+.+++.++++|+++  .| |||++|||++++..+|||+++|++ |++. ..|+.+++.+
T Consensus       458 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~  533 (556)
T PRK11819        458 KTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF--PG-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE  533 (556)
T ss_pred             HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CC-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence            9999999999999999999999999999999987  24 899999999999999999999986 7876 5888877644

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=3e-56  Score=501.19  Aligned_cols=363  Identities=21%  Similarity=0.236  Sum_probs=279.1

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      +..++||++.|+.   +..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.+++      
T Consensus         4 ~i~~~nls~~~~~---~~~il~~is~~i~~Ge~~~liG~NGs--GKSTL------l~~i~G~~~p~~G~i~~~~------   66 (552)
T TIGR03719         4 IYTMNRVSKVVPP---KKEILKDISLSFFPGAKIGVLGLNGA--GKSTL------LRIMAGVDKEFNGEARPAP------   66 (552)
T ss_pred             EEEEeeEEEecCC---CCeeecCceEEECCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCceEEecC------
Confidence            4568999999861   24599999999988      999999  57665      6799999999999999875      


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhh--------------cCCChHH----------------------HHHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL--------------KQVPKDL----------------------AQLE  166 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~--------------~~~~~~~----------------------~~~~  166 (601)
                          +..+||+||+|.+++++||.||+.|+...              .+.+..+                      ...+
T Consensus        67 ----~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (552)
T TIGR03719        67 ----GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRK  142 (552)
T ss_pred             ----CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHH
Confidence                24699999999999999999999875321              1111111                      2245


Q ss_pred             HHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcch
Q psy7365         167 ISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNL  246 (601)
Q Consensus       167 ~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~  246 (601)
                      +.++++.+|+.. .++++.+||||||||+++|++|+                                      .+    
T Consensus       143 ~~~~l~~~~l~~-~~~~~~~LSgGqkqrv~la~al~--------------------------------------~~----  179 (552)
T TIGR03719       143 LEIAMDALRCPP-WDADVTKLSGGERRRVALCRLLL--------------------------------------SK----  179 (552)
T ss_pred             HHHHHhhCCCCc-ccCchhhcCHHHHHHHHHHHHHh--------------------------------------cC----
Confidence            678889999964 68899999999999998544322                                      22    


Q ss_pred             hhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhH
Q psy7365         247 THKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDE  326 (601)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~  326 (601)
                                                     |++|||||||++||+.++..+.+.|+++        +.|||++||++++
T Consensus       180 -------------------------------p~lLLLDEPt~~LD~~~~~~l~~~L~~~--------~~tvIiisHd~~~  220 (552)
T TIGR03719       180 -------------------------------PDMLLLDEPTNHLDAESVAWLEQHLQEY--------PGTVVAVTHDRYF  220 (552)
T ss_pred             -------------------------------CCEEEEcCCCCCCChHHHHHHHHHHHhC--------CCeEEEEeCCHHH
Confidence                                           5899999999999999999999999864        2599999999999


Q ss_pred             HHhcCCEEEEecCCccc-cccCccc--------c----------------------------------------------
Q psy7365         327 ADLLGDRIAIIAAGKLQ-CCGSSVF--------L----------------------------------------------  351 (601)
Q Consensus       327 ~~~l~Drv~vL~~GkIv-~~G~~~l--------L----------------------------------------------  351 (601)
                      +..+||++++|.+|+++ ..|....        .                                              
T Consensus       221 ~~~~~d~v~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (552)
T TIGR03719       221 LDNVAGWILELDRGRGIPWEGNYSSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSPKARQAKSKARLARYEELLSQE  300 (552)
T ss_pred             HHhhcCeEEEEECCEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhc
Confidence            99999999999999964 2221100        0                                              


Q ss_pred             ------------ccc--ccc----------cc--------------------cccccc--------------CCc--c--
Q psy7365         352 ------------KNS--FAR----------GY--------------------YLSLDM--------------KSA--P--  369 (601)
Q Consensus       352 ------------k~~--~g~----------g~--------------------~igld~--------------~~~--~--  369 (601)
                                  ...  .++          .|                    .+|.++              ...  .  
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~  380 (552)
T TIGR03719       301 FQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIK  380 (552)
T ss_pred             ccccCCCceeecCCCCCCCCeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEE
Confidence                        000  000          00                    000000              000  0  


Q ss_pred             --cccccccCCCCc-ccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCc-ccccccCcCChHHHHHHHHHHHH
Q psy7365         370 --QKSYIGYCPQFD-ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIAL  445 (601)
Q Consensus       370 --~~~~ig~v~Q~~-~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~-~~~~~~~~LSgGqkQRl~lA~AL  445 (601)
                        ...++||+||++ .+++.+|+.|++.+....++....  ...+.++++.+++.+ ..++++.+|||||||||+||+||
T Consensus       381 ~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al  458 (552)
T TIGR03719       381 IGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTL  458 (552)
T ss_pred             ECCceEEEEEeCCccccCCCCcHHHHHHhhccccccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHH
Confidence              012589999996 488889999999876433332221  223567899999964 57899999999999999999999


Q ss_pred             hCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeC-CEEE-EecCHHHHHH
Q psy7365         446 LGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVN-GQFT-CLGSATHLKS  519 (601)
Q Consensus       446 ~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~-G~iv-~~G~~~~L~~  519 (601)
                      +.+|++|||||||+|||+.+++.++++|+++.  | |||++|||++++..+|||+++|++ |++. ..|+.++..+
T Consensus       459 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~  531 (552)
T TIGR03719       459 KSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE  531 (552)
T ss_pred             hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence            99999999999999999999999999999872  4 899999999999999999999987 5776 6788776654

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=5.7e-55  Score=492.31  Aligned_cols=355  Identities=21%  Similarity=0.276  Sum_probs=271.1

Q ss_pred             cccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEE-----------Ec
Q psy7365          53 ESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAK-----------IY  115 (601)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~-----------~~  115 (601)
                      ++++++||..   ..+|++++ .+.+      +||||+  |||||      .++|+|+++|++|+|.           ++
T Consensus        77 ~~~~~~yg~~---~~~L~~l~-~i~~Gev~gLvG~NGa--GKSTL------lkiL~G~l~p~~G~i~~~~~~~~~~~~~~  144 (590)
T PRK13409         77 EEPVHRYGVN---GFKLYGLP-IPKEGKVTGILGPNGI--GKTTA------VKILSGELIPNLGDYEEEPSWDEVLKRFR  144 (590)
T ss_pred             cCceEEecCC---ceeEecCC-cCCCCCEEEEECCCCC--CHHHH------HHHHhCCccCCCccccCCCcHHHHHHHhC
Confidence            3478888631   24899999 7766      999999  56665      5799999999999998           89


Q ss_pred             cccCCCchHHh---cccEEEEccCCCCCCC---CCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCCh
Q psy7365         116 DHDIRTDMTTI---RRSLGVCPQYNALFDK---LTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSG  189 (601)
Q Consensus       116 g~~~~~~~~~~---~~~ig~v~Q~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg  189 (601)
                      |.++.......   +..+++.+|...+++.   .||.|++.+.         ..+.+++++++.+||.+..++.+.+|||
T Consensus       145 G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSg  215 (590)
T PRK13409        145 GTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDISELSG  215 (590)
T ss_pred             ChHHHHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCChhhCCH
Confidence            98875422221   2346777776544433   3999998642         2345788999999999999999999999


Q ss_pred             HHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHH
Q psy7365         190 GMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTV  269 (601)
Q Consensus       190 G~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~  269 (601)
                      |||||++||+||+                                      .+                           
T Consensus       216 Ge~qrv~ia~al~--------------------------------------~~---------------------------  230 (590)
T PRK13409        216 GELQRVAIAAALL--------------------------------------RD---------------------------  230 (590)
T ss_pred             HHHHHHHHHHHHh--------------------------------------cC---------------------------
Confidence            9999998644322                                      22                           


Q ss_pred             HHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCC--c---ccc
Q psy7365         270 LFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG--K---LQC  344 (601)
Q Consensus       270 ~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~G--k---Iv~  344 (601)
                              |++|||||||++||+.++..++++|+++     .. |+|||++|||++++..+||++++|.++  .   +..
T Consensus       231 --------p~lllLDEPts~LD~~~~~~l~~~i~~l-----~~-g~tvIivsHd~~~l~~~~D~v~vl~~~~g~~g~~~~  296 (590)
T PRK13409        231 --------ADFYFFDEPTSYLDIRQRLNVARLIREL-----AE-GKYVLVVEHDLAVLDYLADNVHIAYGEPGAYGVVSK  296 (590)
T ss_pred             --------CCEEEEECCCCCCCHHHHHHHHHHHHHH-----HC-CCEEEEEeCCHHHHHHhCCEEEEEeCCccccceecc
Confidence                    5899999999999999999999999997     24 899999999999999999999999652  1   110


Q ss_pred             c------------c--C---------ccccc---c-----------------ccc------------cccc---ccccc-
Q psy7365         345 C------------G--S---------SVFLK---N-----------------SFA------------RGYY---LSLDM-  365 (601)
Q Consensus       345 ~------------G--~---------~~lLk---~-----------------~~g------------~g~~---igld~-  365 (601)
                      .            +  .         +...+   .                 .++            .|..   +|.++ 
T Consensus       297 ~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~l~~~s~~i~~Geiv~l~G~NGs  376 (590)
T PRK13409        297 PKGVRVGINEYLKGYLPEENMRIRPEPIEFEERPPRDESERETLVEYPDLTKKLGDFSLEVEGGEIYEGEVIGIVGPNGI  376 (590)
T ss_pred             hhHHHHhHHHHHHhcchhhhhhccccCcceecCCCccccCCceEEEEcceEEEECCEEEEecceEECCCCEEEEECCCCC
Confidence            0            0  0         00000   0                 000            0000   00000 


Q ss_pred             -------------CCc--c--cccccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCccccccc
Q psy7365         366 -------------KSA--P--QKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV  428 (601)
Q Consensus       366 -------------~~~--~--~~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~  428 (601)
                                   ...  .  ...++||+||++.+++.+||+|++.+....++  .   ...+.++++.++|.+..++++
T Consensus       377 GKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~--~---~~~~~~~L~~l~l~~~~~~~~  451 (590)
T PRK13409        377 GKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLG--S---SYYKSEIIKPLQLERLLDKNV  451 (590)
T ss_pred             CHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcC--h---HHHHHHHHHHCCCHHHHhCCc
Confidence                         000  0  01358999999888889999999987532221  1   234678999999998899999


Q ss_pred             CcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCE
Q psy7365         429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ  507 (601)
Q Consensus       429 ~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~  507 (601)
                      .+|||||||||+||+||+.+|++|||||||+|||+.++..++++|++++++ |+|||++|||++++..+|||+++|++ +
T Consensus       452 ~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~  530 (590)
T PRK13409        452 KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-E  530 (590)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-c
Confidence            999999999999999999999999999999999999999999999999764 89999999999999999999999964 7


Q ss_pred             EEEecC
Q psy7365         508 FTCLGS  513 (601)
Q Consensus       508 iv~~G~  513 (601)
                      +...|+
T Consensus       531 ~~~~g~  536 (590)
T PRK13409        531 PGKHGH  536 (590)
T ss_pred             ceeeee
Confidence            776665

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-53  Score=484.38  Aligned_cols=357  Identities=21%  Similarity=0.286  Sum_probs=269.6

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM  123 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~  123 (601)
                      +.++||++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|..     
T Consensus         2 i~i~nls~~~g~----~~~l~~vs~~i~~Ge~v~LvG~NGs--GKSTL------LkiL~G~~~pd~G~I~~~~~~-----   64 (638)
T PRK10636          2 IVFSSLQIRRGV----RVLLDNATATINPGQKVGLVGKNGC--GKSTL------LALLKNEISADGGSYTFPGNW-----   64 (638)
T ss_pred             EEEEEEEEEeCC----ceeecCcEEEECCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCceEEecCCC-----
Confidence            348999999965    3499999999988      999999  57665      679999999999999998742     


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHh-----------------------HhhcC----CChHHHHHHHHHHHHHcCC
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFY-----------------------SQLKQ----VPKDLAQLEISNMIGDLGI  176 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~-----------------------~~~~~----~~~~~~~~~~~~~l~~~gl  176 (601)
                           .+||++|++..+ ..++.+++.-.                       ....+    .+....+.++.++++.+|+
T Consensus        65 -----~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl  138 (638)
T PRK10636         65 -----QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGF  138 (638)
T ss_pred             -----EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Confidence                 378888865333 24555544210                       00000    1112345678899999999


Q ss_pred             C-cccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHH
Q psy7365         177 P-HKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALET  255 (601)
Q Consensus       177 ~-~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  255 (601)
                      . +..++++.+|||||||||++|++|+                                      .+             
T Consensus       139 ~~~~~~~~~~~LSgGerqRv~LA~aL~--------------------------------------~~-------------  167 (638)
T PRK10636        139 SNEQLERPVSDFSGGWRMRLNLAQALI--------------------------------------CR-------------  167 (638)
T ss_pred             CchhhcCchhhcCHHHHHHHHHHHHHc--------------------------------------cC-------------
Confidence            7 5789999999999999998654332                                      22             


Q ss_pred             HhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEE
Q psy7365         256 LKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIA  335 (601)
Q Consensus       256 ~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~  335 (601)
                                            |++|||||||++||+.++.++.+.|.++        +.|||+||||++++..+||+++
T Consensus       168 ----------------------P~lLLLDEPtn~LD~~~~~~L~~~L~~~--------~~tviivsHd~~~l~~~~d~i~  217 (638)
T PRK10636        168 ----------------------SDLLLLDEPTNHLDLDAVIWLEKWLKSY--------QGTLILISHDRDFLDPIVDKII  217 (638)
T ss_pred             ----------------------CCEEEEcCCCCcCCHHHHHHHHHHHHhC--------CCeEEEEeCCHHHHHHhcCEEE
Confidence                                  5899999999999999999999998764        4699999999999999999999


Q ss_pred             EecCCccccc-cCcc-----------------------------c--------------------------ccc-----c
Q psy7365         336 IIAAGKLQCC-GSSV-----------------------------F--------------------------LKN-----S  354 (601)
Q Consensus       336 vL~~GkIv~~-G~~~-----------------------------l--------------------------Lk~-----~  354 (601)
                      +|.+|++... |...                             .                          ...     .
T Consensus       218 ~L~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~~~~~a~~r~~~l~~~~~~~~~~~~~~  297 (638)
T PRK10636        218 HIEQQSLFEYTGNYSSFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNP  297 (638)
T ss_pred             EEeCCEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcccccccCCc
Confidence            9999998421 1000                             0                          000     0


Q ss_pred             --------c--cc----------cc--------------------cccccc--------------CCc--c----ccccc
Q psy7365         355 --------F--AR----------GY--------------------YLSLDM--------------KSA--P----QKSYI  374 (601)
Q Consensus       355 --------~--g~----------g~--------------------~igld~--------------~~~--~----~~~~i  374 (601)
                              .  ++          .|                    ++|.++              ...  .    ...++
T Consensus       298 ~~~~~~~~~~~~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i  377 (638)
T PRK10636        298 FHFSFRAPESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKL  377 (638)
T ss_pred             eeEecCCCccCCCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEE
Confidence                    0  00          00                    000000              000  0    01358


Q ss_pred             ccCCCCc--ccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCC-cccccccCcCChHHHHHHHHHHHHhCCCCE
Q psy7365         375 GYCPQFD--ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNTPL  451 (601)
Q Consensus       375 g~v~Q~~--~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~-~~~~~~~~~LSgGqkQRl~lA~AL~~~P~l  451 (601)
                      ||++|+.  .+.+..|+.+++...   .   .......+.++|+.+++. +..++++++|||||||||+||++|+.+|++
T Consensus       378 gy~~Q~~~~~l~~~~~~~~~~~~~---~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~l  451 (638)
T PRK10636        378 GYFAQHQLEFLRADESPLQHLARL---A---PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNL  451 (638)
T ss_pred             EEecCcchhhCCccchHHHHHHHh---C---chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence            9999974  345566777765321   1   122345688999999996 468899999999999999999999999999


Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEE-EecCHHHHHH
Q psy7365         452 IFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT-CLGSATHLKS  519 (601)
Q Consensus       452 LlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv-~~G~~~~L~~  519 (601)
                      |||||||+|||+.++..+.++|+++  .| |||++|||++++..+|||+++|++|+++ +.|++++..+
T Consensus       452 LlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  517 (638)
T PRK10636        452 LLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ  517 (638)
T ss_pred             EEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence            9999999999999999999999987  34 9999999999999999999999999997 8999988743

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=5e-52  Score=473.85  Aligned_cols=359  Identities=20%  Similarity=0.208  Sum_probs=267.8

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      +..+++|++.|+.    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|..    
T Consensus         3 ~l~i~~ls~~~~~----~~il~~is~~i~~Ge~v~LvG~NGs--GKSTL------LriiaG~~~p~~G~I~~~~~~----   66 (635)
T PRK11147          3 LISIHGAWLSFSD----APLLDNAELHIEDNERVCLVGRNGA--GKSTL------MKILNGEVLLDDGRIIYEQDL----   66 (635)
T ss_pred             EEEEeeEEEEeCC----ceeEeCcEEEECCCCEEEEECCCCC--CHHHH------HHHHcCCCCCCCeEEEeCCCC----
Confidence            3558999999864    4599999999988      999999  57665      679999999999999998732    


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHH------------------------------HHhHhhc----CCChHHHHHHHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHM------------------------------WFYSQLK----QVPKDLAQLEIS  168 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l------------------------------~~~~~~~----~~~~~~~~~~~~  168 (601)
                            .+++++|.+......++.+++                              .++....    ..+....+.++.
T Consensus        67 ------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  140 (635)
T PRK11147         67 ------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRIN  140 (635)
T ss_pred             ------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence                  256677665322234444443                              2111110    011112456788


Q ss_pred             HHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhh
Q psy7365         169 NMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTH  248 (601)
Q Consensus       169 ~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~  248 (601)
                      ++++.+|+.  .++++.+|||||||||++||+|+                                      .+      
T Consensus       141 ~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL~--------------------------------------~~------  174 (635)
T PRK11147        141 EVLAQLGLD--PDAALSSLSGGWLRKAALGRALV--------------------------------------SN------  174 (635)
T ss_pred             HHHHhCCCC--CCCchhhcCHHHHHHHHHHHHHh--------------------------------------cC------
Confidence            999999997  38899999999999998654332                                      22      


Q ss_pred             HHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHH
Q psy7365         249 KQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEAD  328 (601)
Q Consensus       249 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~  328 (601)
                                                   |++|||||||++||+.++.++.+.|+++        +.|||++|||.+++.
T Consensus       175 -----------------------------P~lLLLDEPt~~LD~~~~~~L~~~L~~~--------~~tvlivsHd~~~l~  217 (635)
T PRK11147        175 -----------------------------PDVLLLDEPTNHLDIETIEWLEGFLKTF--------QGSIIFISHDRSFIR  217 (635)
T ss_pred             -----------------------------CCEEEEcCCCCccCHHHHHHHHHHHHhC--------CCEEEEEeCCHHHHH
Confidence                                         5899999999999999999999999875        249999999999999


Q ss_pred             hcCCEEEEecCCccccc-cCccc--------------------------------------------------cc-----
Q psy7365         329 LLGDRIAIIAAGKLQCC-GSSVF--------------------------------------------------LK-----  352 (601)
Q Consensus       329 ~l~Drv~vL~~GkIv~~-G~~~l--------------------------------------------------Lk-----  352 (601)
                      .+||++++|.+|+++.. |....                                                  +.     
T Consensus       218 ~~~d~i~~L~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~r~~~~~~~~~~~~~  297 (635)
T PRK11147        218 NMATRIVDLDRGKLVSYPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKALRRERSE  297 (635)
T ss_pred             HhcCeEEEEECCEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhhcc
Confidence            99999999999998632 21000                                                  00     


Q ss_pred             c---------------cccc----------cc--------------------cccccc--------------CCc-----
Q psy7365         353 N---------------SFAR----------GY--------------------YLSLDM--------------KSA-----  368 (601)
Q Consensus       353 ~---------------~~g~----------g~--------------------~igld~--------------~~~-----  368 (601)
                      .               ..++          .|                    ++|.++              ...     
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~  377 (635)
T PRK11147        298 RREVMGTAKMQVEEASRSGKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIH  377 (635)
T ss_pred             ccccCCceeEEeCCCCCCCCceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE
Confidence            0               0000          00                    000000              000     


Q ss_pred             -ccccccccCCCCc-ccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCC-cccccccCcCChHHHHHHHHHHHH
Q psy7365         369 -PQKSYIGYCPQFD-ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIAL  445 (601)
Q Consensus       369 -~~~~~ig~v~Q~~-~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~-~~~~~~~~~LSgGqkQRl~lA~AL  445 (601)
                       ...-++||++|++ .+++.+||.||+.+........  .....+.++++.+++. +..++++++|||||||||+||++|
T Consensus       378 ~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al  455 (635)
T PRK11147        378 CGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLF  455 (635)
T ss_pred             ECCCcEEEEEeCcccccCCCCCHHHHHHhhccccccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHH
Confidence             0012589999985 5888999999998743211111  1234578899999996 567899999999999999999999


Q ss_pred             hCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEe-CCEEEE-ecCHHHH
Q psy7365         446 LGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMV-NGQFTC-LGSATHL  517 (601)
Q Consensus       446 ~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~-~G~iv~-~G~~~~L  517 (601)
                      +.+|++|||||||+|||+.++..+.++|+++   +.|||++|||++++..+|||+++|+ +|++.. .|+.++-
T Consensus       456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y  526 (635)
T PRK11147        456 LKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA  526 (635)
T ss_pred             hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence            9999999999999999999999999999886   4599999999999999999999998 799864 6777665

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=2.9e-50  Score=462.09  Aligned_cols=370  Identities=19%  Similarity=0.208  Sum_probs=266.1

Q ss_pred             chhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCC---CCCeeEEEEccc
Q psy7365          47 AYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGML---PVSSGTAKIYDH  117 (601)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~---~~~~G~v~~~g~  117 (601)
                      ...+.++|+++.|++    ...++|+||++.+      +|||||  |||||      .++|+|..   .|++|+|.+.+.
T Consensus       175 ~~~I~i~nls~~y~~----~~ll~~isl~i~~Ge~~gLvG~NGs--GKSTL------Lr~l~g~~~~g~p~~g~I~~~~Q  242 (718)
T PLN03073        175 IKDIHMENFSISVGG----RDLIVDASVTLAFGRHYGLVGRNGT--GKTTF------LRYMAMHAIDGIPKNCQILHVEQ  242 (718)
T ss_pred             ceeEEEceEEEEeCC----CEEEECCEEEECCCCEEEEECCCCC--CHHHH------HHHHcCCCCCCCCCCCEEEEEec
Confidence            455679999999963    3499999999988      999999  57665      67999864   588999986554


Q ss_pred             cCCCc------------h---HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCCh-------------------HHH
Q psy7365         118 DIRTD------------M---TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK-------------------DLA  163 (601)
Q Consensus       118 ~~~~~------------~---~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~-------------------~~~  163 (601)
                      .+...            .   ...+..+++++|++.+... ++.++. +.....+.++                   ..+
T Consensus       243 ~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~  320 (718)
T PLN03073        243 EVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKG-KGANKDGVDKDAVSQRLEEIYKRLELIDAYTA  320 (718)
T ss_pred             cCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-cccccc-ccccccccchHHHHHHHHHHHHHHHhcCcchH
Confidence            32110            0   1123447889988753221 222221 1111122222                   234


Q ss_pred             HHHHHHHHHHcCCC-cccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcC
Q psy7365         164 QLEISNMIGDLGIP-HKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINH  242 (601)
Q Consensus       164 ~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~  242 (601)
                      .+++.++++.+|+. +..++++.+||||||||++||++|+                                      .+
T Consensus       321 ~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~--------------------------------------~~  362 (718)
T PLN03073        321 EARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALF--------------------------------------IE  362 (718)
T ss_pred             HHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHh--------------------------------------cC
Confidence            56778888899986 5578999999999999998654332                                      22


Q ss_pred             CcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEec
Q psy7365         243 PMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH  322 (601)
Q Consensus       243 p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tH  322 (601)
                                                         |++|||||||++||+.++.++.+.|+++        |.|+|++||
T Consensus       363 -----------------------------------p~lLlLDEPt~~LD~~~~~~l~~~L~~~--------~~tviivsH  399 (718)
T PLN03073        363 -----------------------------------PDLLLLDEPTNHLDLHAVLWLETYLLKW--------PKTFIVVSH  399 (718)
T ss_pred             -----------------------------------CCEEEEECCCCCCCHHHHHHHHHHHHHc--------CCEEEEEEC
Confidence                                               5899999999999999999999999864        679999999


Q ss_pred             chhHHHhcCCEEEEecCCcccc-ccCcc----------------------------------------------------
Q psy7365         323 YMDEADLLGDRIAIIAAGKLQC-CGSSV----------------------------------------------------  349 (601)
Q Consensus       323 dl~~~~~l~Drv~vL~~GkIv~-~G~~~----------------------------------------------------  349 (601)
                      |++++..+||++++|.+|++.. .|...                                                    
T Consensus       400 d~~~l~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~e~~~k~~~~l~~~i~~~~~~a~~~~~~~s~~k~l~  479 (718)
T PLN03073        400 AREFLNTVVTDILHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRASLVQSRIKALD  479 (718)
T ss_pred             CHHHHHHhCCEEEEEECCEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhcchHHH
Confidence            9999999999999999999852 11100                                                    


Q ss_pred             ----------------cccc-c--ccc----------cc-----c----------------ccccc--------------
Q psy7365         350 ----------------FLKN-S--FAR----------GY-----Y----------------LSLDM--------------  365 (601)
Q Consensus       350 ----------------lLk~-~--~g~----------g~-----~----------------igld~--------------  365 (601)
                                      .... .  .+.          .|     .                +|.++              
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll  559 (718)
T PLN03073        480 RLGHVDAVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGEL  559 (718)
T ss_pred             HHhhhhccccCCCceeecCCCccCCCCceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence                            0000 0  000          00     0                00000              


Q ss_pred             CCc------ccccccccCCCCcccCCCCCHHHHHHHh-HHhc-CCChhHHHHHHHHHHHHcCCC-cccccccCcCChHHH
Q psy7365         366 KSA------PQKSYIGYCPQFDALNDRLTPREHLEFY-SRVR-NLPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNK  436 (601)
Q Consensus       366 ~~~------~~~~~ig~v~Q~~~l~~~lTv~E~L~~~-~~~~-g~~~~~~~~~~~~lLe~~~L~-~~~~~~~~~LSgGqk  436 (601)
                      ...      ..+.++||++|++  ++.+++.++..+. ...+ +.    ..+++.++|+.+++. +..++++.+||||||
T Consensus       560 ~p~~G~I~~~~~~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~~~----~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqk  633 (718)
T PLN03073        560 QPSSGTVFRSAKVRMAVFSQHH--VDGLDLSSNPLLYMMRCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQK  633 (718)
T ss_pred             CCCCceEEECCceeEEEEeccc--cccCCcchhHHHHHHHhcCCC----CHHHHHHHHHHCCCChHHhcCCccccCHHHH
Confidence            000      0124689999985  2345565554322 1211 21    135678899999997 467899999999999


Q ss_pred             HHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEE-EecCHH
Q psy7365         437 RKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT-CLGSAT  515 (601)
Q Consensus       437 QRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv-~~G~~~  515 (601)
                      |||+||+||+.+|++|||||||+|||+.++..+.+.|.++  +| |||++|||++++..+|||+++|++|+++ ..|+++
T Consensus       634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~  710 (718)
T PLN03073        634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFH  710 (718)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHH
Confidence            9999999999999999999999999999999998888765  34 9999999999999999999999999998 789888


Q ss_pred             HHHHH
Q psy7365         516 HLKSK  520 (601)
Q Consensus       516 ~L~~~  520 (601)
                      +.++.
T Consensus       711 ~~~~~  715 (718)
T PLN03073        711 DYKKT  715 (718)
T ss_pred             HHHHH
Confidence            76543

>KOG0055|consensus

Probab=100.00  E-value=8.2e-49  Score=453.95  Aligned_cols=205  Identities=26%  Similarity=0.351  Sum_probs=161.6

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-  121 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-  121 (601)
                      -++++|+.++|.... +...++|+||.+++      +|||||  ||||     + .++|.+++.|++|+|.+||.|+.+ 
T Consensus       350 ~ief~nV~FsYPsRp-dv~Il~g~sl~i~~G~~valVG~SGs--GKST-----~-i~LL~RfydP~~G~V~idG~di~~~  420 (1228)
T KOG0055|consen  350 EIEFRNVCFSYPSRP-DVKILKGVSLKIPSGQTVALVGPSGS--GKST-----L-IQLLARFYDPTSGEVLIDGEDIRNL  420 (1228)
T ss_pred             ceEEEEEEecCCCCC-cchhhCCeEEEeCCCCEEEEECCCCC--CHHH-----H-HHHHHHhcCCCCceEEEcCccchhc
Confidence            356999999975544 68899999999988      999999  5554     4 579999999999999999999976 


Q ss_pred             chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHH-----HHHHHHHc--CCCcccCCccccCChHHHhh
Q psy7365         122 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIGDL--GIPHKRTSLANTLSGGMQRK  194 (601)
Q Consensus       122 ~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LSgG~~qr  194 (601)
                      +...+|..||+|+|+|.+| ..|++||+.|+.+.  ...+++.+.     +.+.+..+  |.+-.....--+||||||||
T Consensus       421 ~~~~lr~~iglV~QePvlF-~~tI~eNI~~G~~d--at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQR  497 (1228)
T KOG0055|consen  421 NLKWLRSQIGLVSQEPVLF-ATTIRENIRYGKPD--ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQR  497 (1228)
T ss_pred             chHHHHhhcCeeeechhhh-cccHHHHHhcCCCc--ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHH
Confidence            4566888999999999666 78999999887543  222322221     12222222  23333444556699999999


Q ss_pred             hhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhc
Q psy7365         195 LDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMS  274 (601)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  274 (601)
                      +|||||++.|                                                                      
T Consensus       498 IAIARalv~~----------------------------------------------------------------------  507 (1228)
T KOG0055|consen  498 IAIARALVRN----------------------------------------------------------------------  507 (1228)
T ss_pred             HHHHHHHHhC----------------------------------------------------------------------
Confidence            9876554333                                                                      


Q ss_pred             cCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc
Q psy7365         275 FVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  345 (601)
Q Consensus       275 ~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~  345 (601)
                         |++|+||||||+||+.+.+.+.+.|.++      ..|+|.|+++|+++.+.. +|++++|.+|+|+..
T Consensus       508 ---P~ILLLDEaTSaLD~~se~~Vq~ALd~~------~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~  568 (1228)
T KOG0055|consen  508 ---PKILLLDEATSALDAESERVVQEALDKA------SKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQ  568 (1228)
T ss_pred             ---CCEEEecCcccccCHHHHHHHHHHHHHh------hcCCeEEEEeeehhhhhc-cCEEEEEECCEEEEe
Confidence               5899999999999999999999999886      368999999999999987 999999999998653

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=6.8e-49  Score=380.27  Aligned_cols=211  Identities=27%  Similarity=0.399  Sum_probs=188.6

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-  121 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-  121 (601)
                      ++.++||+|.||+..    +|+|+||+|.+      +||||+  |||||      .|||+||.+|++|+|.++|.++.. 
T Consensus         2 mi~i~~l~K~fg~~~----VLkgi~l~v~~Gevv~iiGpSGS--GKSTl------LRclN~LE~~~~G~I~i~g~~~~~~   69 (240)
T COG1126           2 MIEIKNLSKSFGDKE----VLKGISLSVEKGEVVVIIGPSGS--GKSTL------LRCLNGLEEPDSGSITVDGEDVGDK   69 (240)
T ss_pred             eEEEEeeeEEeCCeE----EecCcceeEcCCCEEEEECCCCC--CHHHH------HHHHHCCcCCCCceEEECCEeccch
Confidence            356899999998655    99999999988      999999  56655      579999999999999999987743 


Q ss_pred             -chHHhcccEEEEccCCCCCCCCCHHHHHHHhH-hhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365         122 -DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYS-QLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK  199 (601)
Q Consensus       122 -~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~  199 (601)
                       +...+|+++|+|||++.|||++||.||+.++. ...+.+++++++++.++|+++||.++.+.+|.+|||||||||+|||
T Consensus        70 ~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIAR  149 (240)
T COG1126          70 KDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIAR  149 (240)
T ss_pred             hhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHH
Confidence             45678999999999999999999999999866 4678999999999999999999999999999999999999998654


Q ss_pred             hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365         200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS  279 (601)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  279 (601)
                      ||                                      +.                                   .|+
T Consensus       150 AL--------------------------------------aM-----------------------------------~P~  156 (240)
T COG1126         150 AL--------------------------------------AM-----------------------------------DPK  156 (240)
T ss_pred             HH--------------------------------------cC-----------------------------------CCC
Confidence            32                                      12                                   269


Q ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                      ++++|||||+|||....++.+.++++     +.+|.|.+++||+|.|+.+.+|||++|++|+++..+++.
T Consensus       157 vmLFDEPTSALDPElv~EVL~vm~~L-----A~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~  221 (240)
T COG1126         157 VMLFDEPTSALDPELVGEVLDVMKDL-----AEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPE  221 (240)
T ss_pred             EEeecCCcccCCHHHHHHHHHHHHHH-----HHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHH
Confidence            99999999999999999999999998     457999999999999999999999999999999888653

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=2.5e-47  Score=421.83  Aligned_cols=358  Identities=24%  Similarity=0.259  Sum_probs=278.4

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT  121 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~  121 (601)
                      .++.+.+|++.|+    +...++|+||++.+      +|+|||  |||||      +++|+|.+.|++|+|...+.    
T Consensus         2 ~~i~~~~ls~~~g----~~~l~~~~~l~~~~G~riGLvG~NGa--GKSTL------LkilaG~~~~~~G~i~~~~~----   65 (530)
T COG0488           2 SMITLENLSLAYG----DRPLLENVSLTLNPGERIGLVGRNGA--GKSTL------LKILAGELEPDSGEVTRPKG----   65 (530)
T ss_pred             ceEEEeeeEEeeC----CceeecCCcceeCCCCEEEEECCCCC--CHHHH------HHHHcCCCcCCCCeEeecCC----
Confidence            3455889999985    44599999999988      999999  57665      68999999999999987642    


Q ss_pred             chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhh-cC-----------------------------CChHHHHHHHHHHH
Q psy7365         122 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL-KQ-----------------------------VPKDLAQLEISNMI  171 (601)
Q Consensus       122 ~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~-~~-----------------------------~~~~~~~~~~~~~l  171 (601)
                            -++||++|++..++..||.+.+.-+..- ..                             ++.-..+.++..++
T Consensus        66 ------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L  139 (530)
T COG0488          66 ------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEAL  139 (530)
T ss_pred             ------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHH
Confidence                  2599999999999999999988653210 00                             11112346788999


Q ss_pred             HHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHH
Q psy7365         172 GDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQM  251 (601)
Q Consensus       172 ~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~  251 (601)
                      ..+|++.. ++++++||||||.||++||+|+.+                                               
T Consensus       140 ~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~-----------------------------------------------  171 (530)
T COG0488         140 LGLGFPDE-DRPVSSLSGGWRRRVALARALLEE-----------------------------------------------  171 (530)
T ss_pred             hcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcC-----------------------------------------------
Confidence            99999988 999999999999999876654433                                               


Q ss_pred             HHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcC
Q psy7365         252 ALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLG  331 (601)
Q Consensus       252 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~  331 (601)
                                                |++|+|||||++||..+..++-+.|.+.       .| |+|+||||-+|+...|
T Consensus       172 --------------------------pDlLLLDEPTNHLD~~~i~WLe~~L~~~-------~g-tviiVSHDR~FLd~V~  217 (530)
T COG0488         172 --------------------------PDLLLLDEPTNHLDLESIEWLEDYLKRY-------PG-TVIVVSHDRYFLDNVA  217 (530)
T ss_pred             --------------------------CCEEEEcCCCcccCHHHHHHHHHHHHhC-------CC-cEEEEeCCHHHHHHHh
Confidence                                      6999999999999999999999999864       57 9999999999999999


Q ss_pred             CEEEEecCCccccccCcc--------------------------------------------------------------
Q psy7365         332 DRIAIIAAGKLQCCGSSV--------------------------------------------------------------  349 (601)
Q Consensus       332 Drv~vL~~GkIv~~G~~~--------------------------------------------------------------  349 (601)
                      ++|+-++.|++.......                                                              
T Consensus       218 t~I~~ld~g~l~~y~Gny~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~  297 (530)
T COG0488         218 THILELDRGKLTPYKGNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEE  297 (530)
T ss_pred             hheEEecCCceeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhc
Confidence            999999999875432100                                                              


Q ss_pred             -----------ccccc---ccc----------cc---------------------ccccccC--------------C---
Q psy7365         350 -----------FLKNS---FAR----------GY---------------------YLSLDMK--------------S---  367 (601)
Q Consensus       350 -----------lLk~~---~g~----------g~---------------------~igld~~--------------~---  367 (601)
                                 .+...   .++          +|                     ++|-++.              .   
T Consensus       298 ~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G  377 (530)
T COG0488         298 RPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG  377 (530)
T ss_pred             ccccccccceeeccCCcccCCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCc
Confidence                       00000   000          00                     0000000              0   


Q ss_pred             ---cccccccccCCCCcc-cCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCC-cccccccCcCChHHHHHHHHH
Q psy7365         368 ---APQKSYIGYCPQFDA-LNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTA  442 (601)
Q Consensus       368 ---~~~~~~ig~v~Q~~~-l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~-~~~~~~~~~LSgGqkQRl~lA  442 (601)
                         ....-++||.+|+.. +.+..|+.|++.-...     . ..+..+...|.+|++. +...++++.||||||.||.+|
T Consensus       378 ~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~-----~-~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La  451 (530)
T COG0488         378 TVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFP-----D-GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLA  451 (530)
T ss_pred             eEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCc-----c-ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHH
Confidence               001235899999874 4577799998864321     1 1146688999999996 566889999999999999999


Q ss_pred             HHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEE-ecCHHHHHH
Q psy7365         443 IALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTC-LGSATHLKS  519 (601)
Q Consensus       443 ~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~-~G~~~~L~~  519 (601)
                      +.++.+|.+|||||||+.||..++..+-+.|.++   ..|||+||||..++..+|++++.+.+ ++.. .|+.++..+
T Consensus       452 ~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~  525 (530)
T COG0488         452 KLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE  525 (530)
T ss_pred             HHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence            9999999999999999999999999999999887   46999999999999999999999998 5544 477766544

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-48  Score=384.73  Aligned_cols=212  Identities=27%  Similarity=0.408  Sum_probs=191.0

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.|+|+||+|++    ..+++|+||++++      +|||||  ||||     + +|||++++.|++|+|+++|+++.+ +
T Consensus         2 I~~~nvsk~y~~----~~av~~v~l~I~~gef~vliGpSGs--GKTT-----t-LkMINrLiept~G~I~i~g~~i~~~d   69 (309)
T COG1125           2 IEFENVSKRYGN----KKAVDDVNLTIEEGEFLVLIGPSGS--GKTT-----T-LKMINRLIEPTSGEILIDGEDISDLD   69 (309)
T ss_pred             ceeeeeehhcCC----ceeeeeeeEEecCCeEEEEECCCCC--cHHH-----H-HHHHhcccCCCCceEEECCeecccCC
Confidence            568999999984    4599999999988      999999  5654     4 579999999999999999999975 5


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCc--ccCCccccCChHHHhhhhchhh
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPH--KRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                      ..++|++||||-|...|||++||.||+++...+.|.+++++++|++|+++.+||++  +.+|+|++|||||||||.+|||
T Consensus        70 ~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RA  149 (309)
T COG1125          70 PVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARA  149 (309)
T ss_pred             HHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999974  7999999999999999986543


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      |                                      +.+                                   |++
T Consensus       150 L--------------------------------------Aad-----------------------------------P~i  156 (309)
T COG1125         150 L--------------------------------------AAD-----------------------------------PPI  156 (309)
T ss_pred             H--------------------------------------hcC-----------------------------------CCe
Confidence            2                                      222                                   579


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                      ++||||+++|||.+|..+.+.++++.    +.-|+|||++|||++|+..++|||++|++|+++-.+++..
T Consensus       157 lLMDEPFgALDpI~R~~lQ~e~~~lq----~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~  222 (309)
T COG1125         157 LLMDEPFGALDPITRKQLQEEIKELQ----KELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDE  222 (309)
T ss_pred             EeecCCccccChhhHHHHHHHHHHHH----HHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHH
Confidence            99999999999999999999999984    4569999999999999999999999999999998887643

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=4e-46  Score=454.39  Aligned_cols=143  Identities=25%  Similarity=0.387  Sum_probs=128.5

Q ss_pred             ccccCCCCcccCCCCCHHHHHHHhHHhcC---CChhHHHHHHHHHHHHcCCCcccccccC----cCChHHHHHHHHHHHH
Q psy7365         373 YIGYCPQFDALNDRLTPREHLEFYSRVRN---LPSVLLNTIVNESLNKFALGHYSDREVR----TLSGGNKRKLSTAIAL  445 (601)
Q Consensus       373 ~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g---~~~~~~~~~~~~lLe~~~L~~~~~~~~~----~LSgGqkQRl~lA~AL  445 (601)
                      .+||++|++.+++.+||+|++.|.+.++.   .+..+..++++++++.++|.+.+|+.++    .|||||||||+||++|
T Consensus       837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL  916 (1394)
T TIGR00956       837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVEL  916 (1394)
T ss_pred             ceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHH
Confidence            47899999888999999999999876652   2334455678999999999999999887    7999999999999999


Q ss_pred             hCCCC-EEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhH-HHhhCCEEEEEeCC-EEEEecCHH
Q psy7365         446 LGNTP-LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE-CEALCTKLTIMVNG-QFTCLGSAT  515 (601)
Q Consensus       446 ~~~P~-lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e-~~~l~drv~iL~~G-~iv~~G~~~  515 (601)
                      +.+|+ +|+|||||+|||+.++..+++.|++++++|+|||++||+++. +...|||+++|++| ++++.|++.
T Consensus       917 ~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~  989 (1394)
T TIGR00956       917 VAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG  989 (1394)
T ss_pred             HcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence            99997 999999999999999999999999998889999999999997 45789999999997 999999973

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1e-47  Score=381.57  Aligned_cols=198  Identities=25%  Similarity=0.374  Sum_probs=178.9

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM  123 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~  123 (601)
                      ..++++++.|++    ..+++|+||+|.+      +|||||  |||||      .|+|+|+.+|++|+|.++|.++..+ 
T Consensus         4 l~i~~v~~~f~~----~~vl~~i~L~v~~GEfvsilGpSGc--GKSTL------LriiAGL~~p~~G~V~~~g~~v~~p-   70 (248)
T COG1116           4 LEIEGVSKSFGG----VEVLEDINLSVEKGEFVAILGPSGC--GKSTL------LRLIAGLEKPTSGEVLLDGRPVTGP-   70 (248)
T ss_pred             EEEEeeEEEeCc----eEEeccceeEECCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCceEEECCcccCCC-
Confidence            348899999987    5699999999988      999999  56665      6799999999999999999998443 


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcc
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFN  203 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~  203 (601)
                         ...+|||||++.+|||+||.||+.|+....+.++.+.++++.++|+.+||.++.+++|++|||||||||+||||+  
T Consensus        71 ---~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL--  145 (248)
T COG1116          71 ---GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARAL--  145 (248)
T ss_pred             ---CCCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHH--
Confidence               567999999999999999999999999999888888888999999999999999999999999999999865433  


Q ss_pred             hhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEE
Q psy7365         204 NKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVIL  283 (601)
Q Consensus       204 ~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liL  283 (601)
                                                          +.+                                   |++|+|
T Consensus       146 ------------------------------------~~~-----------------------------------P~lLLl  154 (248)
T COG1116         146 ------------------------------------ATR-----------------------------------PKLLLL  154 (248)
T ss_pred             ------------------------------------hcC-----------------------------------CCEEEE
Confidence                                                233                                   589999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCC
Q psy7365         284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG  340 (601)
Q Consensus       284 DEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~G  340 (601)
                      |||+++||+.++..+.+.+.++|.    ..++||++||||++|+..++|||++|.++
T Consensus       155 DEPFgALDalTR~~lq~~l~~lw~----~~~~TvllVTHdi~EAv~LsdRivvl~~~  207 (248)
T COG1116         155 DEPFGALDALTREELQDELLRLWE----ETRKTVLLVTHDVDEAVYLADRVVVLSNR  207 (248)
T ss_pred             cCCcchhhHHHHHHHHHHHHHHHH----hhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence            999999999999999999999984    46899999999999999999999999874

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.9e-48  Score=389.12  Aligned_cols=214  Identities=27%  Similarity=0.374  Sum_probs=193.7

Q ss_pred             hhhccccccccc-CCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365          50 SLFESLSENRDK-LGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-  121 (601)
Q Consensus        50 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-  121 (601)
                      +.+++++|.|.+ .+....|++||||+|.+      +|+|||  |||||      .||+++|..|++|+|.++|.++.. 
T Consensus         2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGA--GKSTL------iR~iN~Le~PtsG~v~v~G~di~~l   73 (339)
T COG1135           2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGA--GKSTL------LRLINLLERPTSGSVFVDGQDLTAL   73 (339)
T ss_pred             eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCC--cHHHH------HHHHhccCCCCCceEEEcCEecccC
Confidence            458999999987 44567899999999988      999999  67765      679999999999999999998864 


Q ss_pred             ---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhch
Q psy7365         122 ---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNV  198 (601)
Q Consensus       122 ---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~  198 (601)
                         .....|++||++||++.++...||.+|++|+++..|+++++.++|+.++|+.+||+++.+++|.+|||||||||+||
T Consensus        74 ~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIA  153 (339)
T COG1135          74 SEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIA  153 (339)
T ss_pred             ChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHH
Confidence               34567889999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             hhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCC
Q psy7365         199 KVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPA  278 (601)
Q Consensus       199 ~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  278 (601)
                      |||.                                      ++                                   |
T Consensus       154 RALa--------------------------------------~~-----------------------------------P  160 (339)
T COG1135         154 RALA--------------------------------------NN-----------------------------------P  160 (339)
T ss_pred             HHHh--------------------------------------cC-----------------------------------C
Confidence            5443                                      33                                   5


Q ss_pred             cEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       279 ~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      ++|++|||||+|||.+.+.+.++|++++    +.-|.||+++||.|+.+.++|||+++|++|+++..|+.
T Consensus       161 ~iLL~DEaTSALDP~TT~sIL~LL~~In----~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v  226 (339)
T COG1135         161 KILLCDEATSALDPETTQSILELLKDIN----RELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTV  226 (339)
T ss_pred             CEEEecCccccCChHHHHHHHHHHHHHH----HHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccH
Confidence            8999999999999999999999999995    35699999999999999999999999999999988753

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=2.3e-45  Score=447.01  Aligned_cols=150  Identities=28%  Similarity=0.428  Sum_probs=131.1

Q ss_pred             ccccCCCCcccCCCCCHHHHHHHhHHhcC---CChhHHHHHHHHHHHHcCCCccccccc-----CcCChHHHHHHHHHHH
Q psy7365         373 YIGYCPQFDALNDRLTPREHLEFYSRVRN---LPSVLLNTIVNESLNKFALGHYSDREV-----RTLSGGNKRKLSTAIA  444 (601)
Q Consensus       373 ~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g---~~~~~~~~~~~~lLe~~~L~~~~~~~~-----~~LSgGqkQRl~lA~A  444 (601)
                      .+|||+|++.+++.+||+|++.|.+.++.   .+.++..+.++++++.++|.+..++.+     +.|||||||||+||++
T Consensus       954 ~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~a 1033 (1470)
T PLN03140        954 ISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVE 1033 (1470)
T ss_pred             heEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHH
Confidence            37899999999999999999999765431   233344567899999999998888886     5899999999999999


Q ss_pred             HhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChh-HHHhhCCEEEEEeC-CEEEEecCH----HHHH
Q psy7365         445 LLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME-ECEALCTKLTIMVN-GQFTCLGSA----THLK  518 (601)
Q Consensus       445 L~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~-e~~~l~drv~iL~~-G~iv~~G~~----~~L~  518 (601)
                      |+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++..+||++++|++ |++++.|++    +++.
T Consensus      1034 L~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~ 1113 (1470)
T PLN03140       1034 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKII 1113 (1470)
T ss_pred             HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHH
Confidence            99999999999999999999999999999999888999999999998 68889999999996 899999996    3555


Q ss_pred             HHhC
Q psy7365         519 SKYG  522 (601)
Q Consensus       519 ~~~~  522 (601)
                      +.|.
T Consensus      1114 ~yF~ 1117 (1470)
T PLN03140       1114 EYFE 1117 (1470)
T ss_pred             HHHH
Confidence            5443

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.9e-45  Score=384.07  Aligned_cols=212  Identities=27%  Similarity=0.372  Sum_probs=189.6

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM  123 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~  123 (601)
                      +.++||+|.||+..    +|+|+||++..      +|||||  ||||     + .|||+||.+|++|+|.++|++++.-+
T Consensus         4 i~l~~v~K~yg~~~----~l~~i~l~i~~Gef~vllGPSGc--GKST-----l-Lr~IAGLe~~~~G~I~i~g~~vt~l~   71 (338)
T COG3839           4 LELKNVRKSFGSFE----VLKDVNLDIEDGEFVVLLGPSGC--GKST-----L-LRMIAGLEEPTSGEILIDGRDVTDLP   71 (338)
T ss_pred             EEEeeeEEEcCCce----eeecceEEEcCCCEEEEECCCCC--CHHH-----H-HHHHhCCCCCCCceEEECCEECCCCC
Confidence            45899999998754    99999999977      999999  5655     4 57999999999999999999997622


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcc
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFN  203 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~  203 (601)
                       ..+|.||+|||++.+||+|||+||++|++.+.+++++++++|+.++.+.++|++..+++|.+|||||||||++|||+  
T Consensus        72 -P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAl--  148 (338)
T COG3839          72 -PEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARAL--  148 (338)
T ss_pred             -hhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHH--
Confidence             23578999999999999999999999999999999999999999999999999999999999999999999865543  


Q ss_pred             hhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEE
Q psy7365         204 NKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVIL  283 (601)
Q Consensus       204 ~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liL  283 (601)
                                                          +.+                                   |++++|
T Consensus       149 ------------------------------------Vr~-----------------------------------P~v~L~  157 (338)
T COG3839         149 ------------------------------------VRK-----------------------------------PKVFLL  157 (338)
T ss_pred             ------------------------------------hcC-----------------------------------CCEEEe
Confidence                                                333                                   589999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc
Q psy7365         284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  351 (601)
Q Consensus       284 DEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL  351 (601)
                      |||+|+||+..|..+...|+++.    +.-|.|+|++|||-.|+..++|||++|.+|++...|++..+
T Consensus       158 DEPlSnLDa~lR~~mr~ei~~lh----~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~el  221 (338)
T COG3839         158 DEPLSNLDAKLRVLMRSEIKKLH----ERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL  221 (338)
T ss_pred             cCchhHhhHHHHHHHHHHHHHHH----HhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHH
Confidence            99999999999999999999984    45689999999999999999999999999999988877543

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.7e-45  Score=386.21  Aligned_cols=213  Identities=27%  Similarity=0.382  Sum_probs=186.7

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT  121 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~  121 (601)
                      +...+++|+|.||    +..+|+|+||++.+      ||||||  |||||      .|||+|+..|++|+|.++|+++..
T Consensus         4 ~~l~i~~v~k~yg----~~~av~~isl~i~~Gef~~lLGPSGc--GKTTl------LR~IAGfe~p~~G~I~l~G~~i~~   71 (352)
T COG3842           4 PALEIRNVSKSFG----DFTAVDDISLDIKKGEFVTLLGPSGC--GKTTL------LRMIAGFEQPSSGEILLDGEDITD   71 (352)
T ss_pred             ceEEEEeeeeecC----CeeEEecceeeecCCcEEEEECCCCC--CHHHH------HHHHhCCCCCCCceEEECCEECCC
Confidence            4456999999998    45599999999988      999999  56654      579999999999999999999975


Q ss_pred             chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcC-CChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh
Q psy7365         122 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ-VPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       122 ~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                      - ..-+|.||+|||+.+|||+|||+||++|++...+ .+++++++++.++++.++|+++.+++|.+|||||||||++|||
T Consensus        72 l-pp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARA  150 (352)
T COG3842          72 V-PPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARA  150 (352)
T ss_pred             C-ChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHH
Confidence            3 2336789999999999999999999999999655 4456788999999999999999999999999999999986544


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      |                                      +.+                                   |++
T Consensus       151 L--------------------------------------~~~-----------------------------------P~v  157 (352)
T COG3842         151 L--------------------------------------VPE-----------------------------------PKV  157 (352)
T ss_pred             h--------------------------------------hcC-----------------------------------cch
Confidence            3                                      232                                   589


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                      |+||||.|+||..-|..+...++++.    +..|.|.|++|||-+|+..++|||++|++|+|.-.|++..
T Consensus       158 LLLDEPlSaLD~kLR~~mr~Elk~lq----~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~e  223 (352)
T COG3842         158 LLLDEPLSALDAKLREQMRKELKELQ----RELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEE  223 (352)
T ss_pred             hhhcCcccchhHHHHHHHHHHHHHHH----HhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHH
Confidence            99999999999999999999999984    4469999999999999999999999999999988887643

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=4.5e-44  Score=437.16  Aligned_cols=140  Identities=23%  Similarity=0.361  Sum_probs=115.0

Q ss_pred             cccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCc-------ccccc----cCcCChHHHHHHH
Q psy7365         372 SYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGH-------YSDRE----VRTLSGGNKRKLS  440 (601)
Q Consensus       372 ~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~-------~~~~~----~~~LSgGqkQRl~  440 (601)
                      +.||||||++.+|+ .|++|||.|+..  ..+    .+.+.++++..++.+       -.|..    -..||||||||++
T Consensus      1296 ~~i~~V~Qep~LF~-gTIreNI~~g~~--~at----~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIa 1368 (1466)
T PTZ00265       1296 NLFSIVSQEPMLFN-MSIYENIKFGKE--DAT----REDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIA 1368 (1466)
T ss_pred             hhccEeCCCCcccc-ccHHHHHhcCCC--CCC----HHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHH
Confidence            46899999998885 799999988521  122    234556666655433       23433    3469999999999


Q ss_pred             HHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccChhHHHhhCCEEEEEeC----CEEE-EecCH
Q psy7365         441 TAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVILTSHNMEECEALCTKLTIMVN----GQFT-CLGSA  514 (601)
Q Consensus       441 lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~-~~G~tVllsTHdl~e~~~l~drv~iL~~----G~iv-~~G~~  514 (601)
                      |||||+.+|+|||||||||+||+.+.+.+.+.|.++. .+|+|+|++||.++.+.. ||+|++|++    |+++ +.|+.
T Consensus      1369 IARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~-aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265       1369 IARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKR-SDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred             HHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHh-CCEEEEEeCCCCCCCEEEEecCH
Confidence            9999999999999999999999999999999999986 368999999999988765 999999999    9965 79999


Q ss_pred             HHHHH
Q psy7365         515 THLKS  519 (601)
Q Consensus       515 ~~L~~  519 (601)
                      ++|.+
T Consensus      1448 ~eLl~ 1452 (1466)
T PTZ00265       1448 EELLS 1452 (1466)
T ss_pred             HHHHh
Confidence            99975

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=2e-44  Score=342.22  Aligned_cols=208  Identities=26%  Similarity=0.389  Sum_probs=187.6

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC--
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT--  121 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~--  121 (601)
                      +.|++++|.|+  ++ ..||+|+||++.+      .|||||  |||||      +|+|.+..+|++|+|.++|+++..  
T Consensus         2 I~f~~V~k~Y~--~g-~~aL~~vs~~i~~Gef~fl~GpSGA--GKSTl------lkLi~~~e~pt~G~i~~~~~dl~~l~   70 (223)
T COG2884           2 IRFENVSKAYP--GG-REALRDVSFHIPKGEFVFLTGPSGA--GKSTL------LKLIYGEERPTRGKILVNGHDLSRLK   70 (223)
T ss_pred             eeehhhhhhcC--CC-chhhhCceEeecCceEEEEECCCCC--CHHHH------HHHHHhhhcCCCceEEECCeeccccc
Confidence            56899999964  44 6799999999988      999999  56665      679999999999999999999864  


Q ss_pred             --chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365         122 --DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK  199 (601)
Q Consensus       122 --~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~  199 (601)
                        ...-+|++||+|||+..+.++.||+||++|.++..|.+++++++++.++|+.+||.++.+..|.+||||||||++|||
T Consensus        71 ~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIAR  150 (223)
T COG2884          71 GREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIAR  150 (223)
T ss_pred             ccccchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHH
Confidence              344578999999999999999999999999999999999999999999999999999999999999999999998665


Q ss_pred             hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365         200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS  279 (601)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  279 (601)
                      |++                                      ++                                   |+
T Consensus       151 AiV--------------------------------------~~-----------------------------------P~  157 (223)
T COG2884         151 AIV--------------------------------------NQ-----------------------------------PA  157 (223)
T ss_pred             HHc--------------------------------------cC-----------------------------------CC
Confidence            443                                      33                                   48


Q ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccccc
Q psy7365         280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  346 (601)
Q Consensus       280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G  346 (601)
                      +||-||||++|||....++++++.++.     ..|.||+++|||.+.+..+-.|++.+.+|+++.+.
T Consensus       158 vLlADEPTGNLDp~~s~~im~lfeein-----r~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~  219 (223)
T COG2884         158 VLLADEPTGNLDPDLSWEIMRLFEEIN-----RLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE  219 (223)
T ss_pred             eEeecCCCCCCChHHHHHHHHHHHHHh-----hcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence            999999999999999999999999983     57999999999999999999999999999987653

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.7e-45  Score=347.10  Aligned_cols=210  Identities=27%  Similarity=0.450  Sum_probs=192.2

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchH
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMT  124 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~  124 (601)
                      .+.+|+|.|+.   ...|++||||+++.      +||||+  ||||+      .|||++++.|++|.|+++|.+...++.
T Consensus         3 ~v~~l~K~y~~---~v~AvrdVSF~ae~Gei~GlLG~NGA--GKTT~------LRmiatlL~P~~G~v~idg~d~~~~p~   71 (245)
T COG4555           3 EVTDLTKSYGS---KVQAVRDVSFEAEEGEITGLLGENGA--GKTTL------LRMIATLLIPDSGKVTIDGVDTVRDPS   71 (245)
T ss_pred             eeeehhhhccC---HHhhhhheeEEeccceEEEEEcCCCC--CchhH------HHHHHHhccCCCceEEEeecccccChH
Confidence            47899999876   55699999999987      999999  56654      579999999999999999999988888


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcch
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNN  204 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~  204 (601)
                      ..|++||++|....+|..||++||+.|+++++++...+++++++++.+.|+|.+.+++.+.+||.||||||+||||    
T Consensus        72 ~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARA----  147 (245)
T COG4555          72 FVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARA----  147 (245)
T ss_pred             HHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHH----
Confidence            8999999999888899999999999999999999999999999999999999999999999999999999986554    


Q ss_pred             hhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEe
Q psy7365         205 KAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILD  284 (601)
Q Consensus       205 ~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLD  284 (601)
                                                        ++|+|                                   +++|||
T Consensus       148 ----------------------------------lvh~P-----------------------------------~i~vlD  158 (245)
T COG4555         148 ----------------------------------LVHDP-----------------------------------SILVLD  158 (245)
T ss_pred             ----------------------------------HhcCC-----------------------------------CeEEEc
Confidence                                              34544                                   899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         285 EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       285 EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                      |||||||..+++.+.+.++++     +.+|++||++||.|+++..+|||++++.+|+++..|+..
T Consensus       159 EP~sGLDi~~~r~~~dfi~q~-----k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~  218 (245)
T COG4555         159 EPTSGLDIRTRRKFHDFIKQL-----KNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIE  218 (245)
T ss_pred             CCCCCccHHHHHHHHHHHHHh-----hcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHH
Confidence            999999999999999999998     457999999999999999999999999999999888654

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=5.4e-43  Score=431.31  Aligned_cols=140  Identities=22%  Similarity=0.330  Sum_probs=117.9

Q ss_pred             ccccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCccc-------cc----ccCcCChHHHHHH
Q psy7365         371 KSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYS-------DR----EVRTLSGGNKRKL  439 (601)
Q Consensus       371 ~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~-------~~----~~~~LSgGqkQRl  439 (601)
                      |++|+|+||++.+|.. |++|||.++.   ..    .++++.++++..++.+..       |.    ...+||||||||+
T Consensus      1312 R~~IsiVpQdp~LF~G-TIreNLd~~~---~~----tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrl 1383 (1622)
T PLN03130       1312 RKVLGIIPQAPVLFSG-TVRFNLDPFN---EH----NDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLL 1383 (1622)
T ss_pred             HhccEEECCCCccccc-cHHHHhCcCC---CC----CHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHH
Confidence            3579999999999876 9999997642   11    234466677766654332       22    3357999999999


Q ss_pred             HHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         440 STAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       440 ~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      +|||||+.+|+|||||||||+||+.+.+.+.+.|++.. +++|+|+++|.++.+.. ||||++|++|+|+..|++++|.+
T Consensus      1384 aLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130       1384 SLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred             HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHHHHh-CCEEEEEECCEEEEeCCHHHHHh
Confidence            99999999999999999999999999999999999874 58999999999999987 99999999999999999999976


Q ss_pred             H
Q psy7365         520 K  520 (601)
Q Consensus       520 ~  520 (601)
                      +
T Consensus      1462 ~ 1462 (1622)
T PLN03130       1462 N 1462 (1622)
T ss_pred             C
Confidence            4

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=4.3e-43  Score=431.28  Aligned_cols=141  Identities=22%  Similarity=0.311  Sum_probs=118.2

Q ss_pred             ccccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCccc-------c----cccCcCChHHHHHH
Q psy7365         371 KSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYS-------D----REVRTLSGGNKRKL  439 (601)
Q Consensus       371 ~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~-------~----~~~~~LSgGqkQRl  439 (601)
                      |++++|+||++.+|+. |++|||.++.   ..+    ++++.++++..++.+..       |    ....+||||||||+
T Consensus      1309 R~~i~iVpQdp~LF~g-TIr~NL~~~~---~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl 1380 (1495)
T PLN03232       1309 RRVLSIIPQSPVLFSG-TVRFNIDPFS---EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLL 1380 (1495)
T ss_pred             HhhcEEECCCCeeeCc-cHHHHcCCCC---CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHH
Confidence            3578999999999875 9999997642   122    23466677776664432       2    23357999999999


Q ss_pred             HHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         440 STAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       440 ~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      +|||||+.+|+|||||||||+||+++.+.+.+.|++.. +++|+|+++|.++.+.. ||||++|++|+++..|++++|.+
T Consensus      1381 aLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232       1381 SLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred             HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHh
Confidence            99999999999999999999999999999999999863 57999999999999887 99999999999999999999976


Q ss_pred             Hh
Q psy7365         520 KY  521 (601)
Q Consensus       520 ~~  521 (601)
                      +.
T Consensus      1459 ~~ 1460 (1495)
T PLN03232       1459 RD 1460 (1495)
T ss_pred             CC
Confidence            53

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=8.4e-44  Score=349.67  Aligned_cols=216  Identities=29%  Similarity=0.388  Sum_probs=190.9

Q ss_pred             chhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCC
Q psy7365          47 AYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIR  120 (601)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~  120 (601)
                      .+++.+++|++.||...    +++|+||+|.+      +||||+  |||||      +|+|.|+++|++|+|.++|.++.
T Consensus         6 ~~~I~vr~v~~~fG~~~----Ild~v~l~V~~Gei~~iiGgSGs--GKStl------Lr~I~Gll~P~~GeI~i~G~~i~   73 (263)
T COG1127           6 EPLIEVRGVTKSFGDRV----ILDGVDLDVPRGEILAILGGSGS--GKSTL------LRLILGLLRPDKGEILIDGEDIP   73 (263)
T ss_pred             cceEEEeeeeeecCCEE----EecCceeeecCCcEEEEECCCCc--CHHHH------HHHHhccCCCCCCeEEEcCcchh
Confidence            67788999999997554    99999999988      999999  56654      57999999999999999999986


Q ss_pred             C----chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhh-cCCChHHHHHHHHHHHHHcCCCcc-cCCccccCChHHHhh
Q psy7365         121 T----DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL-KQVPKDLAQLEISNMIGDLGIPHK-RTSLANTLSGGMQRK  194 (601)
Q Consensus       121 ~----~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~~qr  194 (601)
                      .    ...++|+++|++||.-+||..+||+||++|+... .++|++.+++.+..-|+.+||... .+.+|++|||||++|
T Consensus        74 ~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KR  153 (263)
T COG1127          74 QLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKR  153 (263)
T ss_pred             ccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHH
Confidence            4    2346789999999999999999999999998754 568999999999999999999988 999999999999999


Q ss_pred             hhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhc
Q psy7365         195 LDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMS  274 (601)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  274 (601)
                      +++|||+.                                      .                                 
T Consensus       154 vaLARAia--------------------------------------l---------------------------------  162 (263)
T COG1127         154 VALARAIA--------------------------------------L---------------------------------  162 (263)
T ss_pred             HHHHHHHh--------------------------------------c---------------------------------
Confidence            98655322                                      2                                 


Q ss_pred             cCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc
Q psy7365         275 FVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  351 (601)
Q Consensus       275 ~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL  351 (601)
                        +|+++++||||+||||.+...+-++|++++.    .-|.|++++|||++.+...|||++++.+|++.+.|++..+
T Consensus       163 --dPell~~DEPtsGLDPI~a~~~~~LI~~L~~----~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el  233 (263)
T COG1127         163 --DPELLFLDEPTSGLDPISAGVIDELIRELND----ALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL  233 (263)
T ss_pred             --CCCEEEecCCCCCCCcchHHHHHHHHHHHHH----hhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence              2589999999999999999999999999953    3589999999999999999999999999999999987544

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.9e-43  Score=355.14  Aligned_cols=212  Identities=28%  Similarity=0.400  Sum_probs=189.1

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCC--
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIR--  120 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~--  120 (601)
                      ++.++++++.|...   .++++|+||++.+      +||||+  |||||      .++++|+++|++|+|.++|.++.  
T Consensus         3 ~i~~~~l~~~y~~~---~~~l~~v~~~i~~Ge~~~i~G~nGs--GKSTL------~~~l~GLl~p~~G~v~~~g~~~~~~   71 (235)
T COG1122           3 MIEAENLSFRYPGR---KAALKDVSLEIEKGERVLLIGPNGS--GKSTL------LKLLNGLLKPTSGEVLVDGLDTSSE   71 (235)
T ss_pred             eEEEEEEEEEcCCC---ceeeeeeEEEECCCCEEEEECCCCC--CHHHH------HHHHcCcCcCCCCEEEECCeeccch
Confidence            45588999997543   7899999999987      999999  56665      57999999999999999999986  


Q ss_pred             CchHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365         121 TDMTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK  199 (601)
Q Consensus       121 ~~~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~  199 (601)
                      .....+++++|+|||+|. +|..-||.++++|+..+.|++++++++|+.++++.+|+.+.+++.+.+|||||||||+|  
T Consensus        72 ~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaI--  149 (235)
T COG1122          72 KSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAI--  149 (235)
T ss_pred             hhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHh--
Confidence            456778999999999994 78899999999999999999999999999999999999999999999999999999984  


Q ss_pred             hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365         200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS  279 (601)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  279 (601)
                               |++.||                                                              .|+
T Consensus       150 ---------A~vLa~--------------------------------------------------------------~P~  158 (235)
T COG1122         150 ---------AGVLAM--------------------------------------------------------------GPE  158 (235)
T ss_pred             ---------hHHHHc--------------------------------------------------------------CCC
Confidence                     343332                                                              269


Q ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      ++|||||||||||.+++.+.+++++++    ...|+|+|++|||++++..+|||+++|++|+++.+|++
T Consensus       159 iliLDEPta~LD~~~~~~l~~~l~~L~----~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p  223 (235)
T COG1122         159 ILLLDEPTAGLDPKGRRELLELLKKLK----EEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDP  223 (235)
T ss_pred             EEEEcCCCCCCCHHHHHHHHHHHHHHH----hcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCH
Confidence            999999999999999999999999994    33479999999999999999999999999999888864

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=2.9e-43  Score=366.10  Aligned_cols=213  Identities=35%  Similarity=0.587  Sum_probs=188.2

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM  123 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~  123 (601)
                      +.+++|+|.|++   ...+|+|+||++.+      +|||||  |||||      +|+|+|+++|++|+|.++|.++....
T Consensus         5 i~~~~l~k~~~~---~~~~l~~vs~~i~~Gei~gllG~NGA--GKTTl------lk~l~gl~~p~~G~i~i~G~~~~~~~   73 (293)
T COG1131           5 IEVRNLTKKYGG---DKTALDGVSFEVEPGEIFGLLGPNGA--GKTTL------LKILAGLLKPTSGEILVLGYDVVKEP   73 (293)
T ss_pred             eeecceEEEeCC---CCEEEeceeEEEcCCeEEEEECCCCC--CHHHH------HHHHhCCcCCCceEEEEcCEeCccCH
Confidence            347899999984   34599999999988      999999  56654      68999999999999999999987666


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcc
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFN  203 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~  203 (601)
                      ...++.+||+||+|.+|+++||+||+.|++.+++.+.+..+++++++++.+||.+..++++++||+|||||+++|+|   
T Consensus        74 ~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~a---  150 (293)
T COG1131          74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALA---  150 (293)
T ss_pred             HHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHH---
Confidence            77888999999999999999999999999999998766667789999999999997799999999999999985433   


Q ss_pred             hhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEE
Q psy7365         204 NKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVIL  283 (601)
Q Consensus       204 ~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liL  283 (601)
                                                         ++++                                   |+++||
T Consensus       151 -----------------------------------L~~~-----------------------------------P~lliL  160 (293)
T COG1131         151 -----------------------------------LLHD-----------------------------------PELLIL  160 (293)
T ss_pred             -----------------------------------HhcC-----------------------------------CCEEEE
Confidence                                               3444                                   489999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHHhhhccccCC-cEEEEEecchhHHHhcCCEEEEecCCccccccCcccc
Q psy7365         284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSG-RTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  351 (601)
Q Consensus       284 DEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G-~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL  351 (601)
                      ||||+||||.++..++++|+++.     .+| +||+++||.++++..+||||++|.+|+++.+++...+
T Consensus       161 DEPt~GLDp~~~~~~~~~l~~l~-----~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l  224 (293)
T COG1131         161 DEPTSGLDPESRREIWELLRELA-----KEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEEL  224 (293)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHH-----hCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence            99999999999999999999984     345 8999999999999999999999999999998865443

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=5.2e-42  Score=422.30  Aligned_cols=140  Identities=24%  Similarity=0.319  Sum_probs=117.4

Q ss_pred             ccccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcc-------ccccc----CcCChHHHHHH
Q psy7365         371 KSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHY-------SDREV----RTLSGGNKRKL  439 (601)
Q Consensus       371 ~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~-------~~~~~----~~LSgGqkQRl  439 (601)
                      |++++|+||++.+|+. |+++||..+.   ..+    ++++.++++..++.+.       .|..+    ..||||||||+
T Consensus      1359 R~~i~iVpQdp~LF~g-TIr~NLdp~~---~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl 1430 (1522)
T TIGR00957      1359 RFKITIIPQDPVLFSG-SLRMNLDPFS---QYS----DEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLV 1430 (1522)
T ss_pred             HhcCeEECCCCcccCc-cHHHHcCccc---CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHH
Confidence            3579999999999886 9999997432   122    2346667777666432       33334    56999999999


Q ss_pred             HHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         440 STAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       440 ~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      +|||||+.+|+|||||||||+||+++.+.+.+.|++.. +++|||+++|.++.+.. ||||++|++|+|++.|++++|.+
T Consensus      1431 ~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957      1431 CLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred             HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHh-CCEEEEEECCEEEEECCHHHHHh
Confidence            99999999999999999999999999999999998863 57999999999999886 89999999999999999999976


Q ss_pred             H
Q psy7365         520 K  520 (601)
Q Consensus       520 ~  520 (601)
                      +
T Consensus      1509 ~ 1509 (1522)
T TIGR00957      1509 Q 1509 (1522)
T ss_pred             C
Confidence            5

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=6.1e-43  Score=366.01  Aligned_cols=215  Identities=27%  Similarity=0.490  Sum_probs=188.3

Q ss_pred             cchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccC
Q psy7365          46 GAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI  119 (601)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~  119 (601)
                      ..++..+++|+|.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|+++|.++
T Consensus         4 ~~~~i~i~~l~k~~~~----~~~l~~vsl~i~~Gei~gllGpNGa--GKSTL------l~~l~Gl~~p~~G~v~i~G~~~   71 (306)
T PRK13537          4 SVAPIDFRNVEKRYGD----KLVVDGLSFHVQRGECFGLLGPNGA--GKTTT------LRMLLGLTHPDAGSISLCGEPV   71 (306)
T ss_pred             CCceEEEEeEEEEECC----eEEEecceEEEeCCcEEEEECCCCC--CHHHH------HHHHhcCCCCCceEEEECCEec
Confidence            3345679999999964    4599999999988      999999  56654      6799999999999999999998


Q ss_pred             CCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365         120 RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK  199 (601)
Q Consensus       120 ~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~  199 (601)
                      .......++++||+||++.+|+++||+||+.|+...++.+..+...++.++++.+||.+..++++++||||||||+++|+
T Consensus        72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~  151 (306)
T PRK13537         72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLAR  151 (306)
T ss_pred             ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHH
Confidence            76555667889999999999999999999999888888777777788899999999999999999999999999998654


Q ss_pred             hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365         200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS  279 (601)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  279 (601)
                      |                                      ++++                                   |+
T Consensus       152 a--------------------------------------L~~~-----------------------------------P~  158 (306)
T PRK13537        152 A--------------------------------------LVND-----------------------------------PD  158 (306)
T ss_pred             H--------------------------------------HhCC-----------------------------------CC
Confidence            3                                      3343                                   48


Q ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                      ++||||||+||||.+++.++++|+++.     .+|+|||++||+++++..+|||+++|.+|+++..+++..
T Consensus       159 lllLDEPt~gLD~~~~~~l~~~l~~l~-----~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~  224 (306)
T PRK13537        159 VLVLDEPTTGLDPQARHLMWERLRSLL-----ARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHA  224 (306)
T ss_pred             EEEEeCCCcCCCHHHHHHHHHHHHHHH-----hCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            999999999999999999999999983     358999999999999999999999999999998876543

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.3e-43  Score=354.63  Aligned_cols=210  Identities=22%  Similarity=0.387  Sum_probs=181.8

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccc---cCCC
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDH---DIRT  121 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~---~~~~  121 (601)
                      .+++++|.|+...    +++|+||+++.      +|||||  |||||      .|+|+|++.|++|+|.++|+   |...
T Consensus         4 ~i~~~~~~~~~~~----a~~di~l~i~~Ge~vaLlGpSGa--GKsTl------LRiIAGLe~p~~G~I~~~~~~l~D~~~   71 (345)
T COG1118           4 RINNVKKRFGAFG----ALDDISLDIKSGELVALLGPSGA--GKSTL------LRIIAGLETPDAGRIRLNGRVLFDVSN   71 (345)
T ss_pred             eehhhhhhccccc----ccccceeeecCCcEEEEECCCCC--cHHHH------HHHHhCcCCCCCceEEECCEeccchhc
Confidence            4788999998777    88999999987      999999  56654      57999999999999999999   5433


Q ss_pred             chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCC--ChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365         122 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV--PKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK  199 (601)
Q Consensus       122 ~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~  199 (601)
                       .....++||+|||+..+|++|||.+|++|++.....  ++.+++.++.++|+.+.|++..+++|.+|||||+|||++||
T Consensus        72 -~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALAR  150 (345)
T COG1118          72 -LAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALAR  150 (345)
T ss_pred             -cchhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHH
Confidence             234457899999999999999999999999977643  34678889999999999999999999999999999998654


Q ss_pred             hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365         200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS  279 (601)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  279 (601)
                      |+                                      +-                                   .|+
T Consensus       151 AL--------------------------------------A~-----------------------------------eP~  157 (345)
T COG1118         151 AL--------------------------------------AV-----------------------------------EPK  157 (345)
T ss_pred             Hh--------------------------------------hc-----------------------------------CCC
Confidence            32                                      11                                   368


Q ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                      +|+||||+++||...+.++..-|+++.    .+.|.|++++|||.+|+.++||||++|.+|+|...|++..
T Consensus       158 vLLLDEPf~ALDa~vr~~lr~wLr~~~----~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~e  224 (345)
T COG1118         158 VLLLDEPFGALDAKVRKELRRWLRKLH----DRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDE  224 (345)
T ss_pred             eEeecCCchhhhHHHHHHHHHHHHHHH----HhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHH
Confidence            999999999999999999999999883    4569999999999999999999999999999988887644

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=2.3e-43  Score=356.98  Aligned_cols=202  Identities=27%  Similarity=0.402  Sum_probs=181.3

Q ss_pred             ccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c---hHH-hcccEEEE
Q psy7365          65 DSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D---MTT-IRRSLGVC  133 (601)
Q Consensus        65 ~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~---~~~-~~~~ig~v  133 (601)
                      -+-++.|+||++..      .|.||+  |||||      .|++++|++|++|+|.++|.++.. +   ..+ .|+++++|
T Consensus        40 ~vvGv~~~sl~v~~GeIfViMGLSGS--GKSTL------vR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMV  111 (386)
T COG4175          40 LVVGVNDASLDVEEGEIFVIMGLSGS--GKSTL------VRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMV  111 (386)
T ss_pred             cEEeeccceeeecCCeEEEEEecCCC--CHHHH------HHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhh
Confidence            35589999999987      999999  56665      579999999999999999999864 2   222 45689999


Q ss_pred             ccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHH
Q psy7365         134 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSF  213 (601)
Q Consensus       134 ~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~  213 (601)
                      ||++.|+|+.||.||+.|+++..|+++++.++++.++|+.+||....+++|++|||||||||.+||||.+|         
T Consensus       112 FQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~---------  182 (386)
T COG4175         112 FQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALAND---------  182 (386)
T ss_pred             hhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccC---------
Confidence            99999999999999999999999999999999999999999999999999999999999999976654443         


Q ss_pred             hhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHH
Q psy7365         214 MNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPY  293 (601)
Q Consensus       214 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~  293 (601)
                                                                                      |++|++|||+|+|||-
T Consensus       183 ----------------------------------------------------------------~~IlLMDEaFSALDPL  198 (386)
T COG4175         183 ----------------------------------------------------------------PDILLMDEAFSALDPL  198 (386)
T ss_pred             ----------------------------------------------------------------CCEEEecCchhhcChH
Confidence                                                                            5899999999999999


Q ss_pred             HHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc
Q psy7365         294 SRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  351 (601)
Q Consensus       294 ~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL  351 (601)
                      -|.++.+.|.+++    +.-.+||+|+|||++|+.+++|||++|.+|+++..|++..+
T Consensus       199 IR~~mQdeLl~Lq----~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eI  252 (386)
T COG4175         199 IRTEMQDELLELQ----AKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEI  252 (386)
T ss_pred             HHHHHHHHHHHHH----HHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHH
Confidence            9999999999985    33579999999999999999999999999999999988654

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=2.6e-42  Score=342.03  Aligned_cols=206  Identities=26%  Similarity=0.370  Sum_probs=178.2

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc--
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD--  122 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~--  122 (601)
                      .+++|+|.|+..+....+++|+||++.+      +|||||  |||||      +++|.|+.+|++|.|.++|.++...  
T Consensus         3 ~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGS--GKSTL------Lniig~ld~pt~G~v~i~g~d~~~l~~   74 (226)
T COG1136           3 ELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGS--GKSTL------LNLLGGLDKPTSGEVLINGKDLTKLSE   74 (226)
T ss_pred             EEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCC--CHHHH------HHHHhcccCCCCceEEECCEEcCcCCH
Confidence            4789999997666568899999999988      999999  67765      6799999999999999999988642  


Q ss_pred             --hHH-hcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccC-CccccCChHHHhhhhch
Q psy7365         123 --MTT-IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRT-SLANTLSGGMQRKLDNV  198 (601)
Q Consensus       123 --~~~-~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgG~~qr~~~~  198 (601)
                        ... .++.||||||+..|.|.+||.||+.+++...+.+....++++.++++.+||.+..+ ++|.+|||||||||+||
T Consensus        75 ~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIA  154 (226)
T COG1136          75 KELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIA  154 (226)
T ss_pred             HHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHH
Confidence              223 34679999999999999999999999988888876566778899999999997766 99999999999999876


Q ss_pred             hhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCC
Q psy7365         199 KVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPA  278 (601)
Q Consensus       199 ~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  278 (601)
                      ||++++                                                                         |
T Consensus       155 RAL~~~-------------------------------------------------------------------------P  161 (226)
T COG1136         155 RALINN-------------------------------------------------------------------------P  161 (226)
T ss_pred             HHHhcC-------------------------------------------------------------------------C
Confidence            554433                                                                         4


Q ss_pred             cEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcc
Q psy7365         279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL  342 (601)
Q Consensus       279 ~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkI  342 (601)
                      ++++.||||++||..+.+.+++++.++.    +..|+|+|++|||...+. .|||++.|.+|++
T Consensus       162 ~iilADEPTgnLD~~t~~~V~~ll~~~~----~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~  220 (226)
T COG1136         162 KIILADEPTGNLDSKTAKEVLELLRELN----KERGKTIIMVTHDPELAK-YADRVIELKDGKI  220 (226)
T ss_pred             CeEEeeCccccCChHHHHHHHHHHHHHH----HhcCCEEEEEcCCHHHHH-hCCEEEEEeCCee
Confidence            8999999999999999999999999984    346999999999987666 9999999999984

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=4.3e-42  Score=364.16  Aligned_cols=217  Identities=29%  Similarity=0.488  Sum_probs=189.7

Q ss_pred             CccchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccc
Q psy7365          44 SMGAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDH  117 (601)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~  117 (601)
                      +|++.++.++||+|.|++    ..+|+|+||++.+      +|||||  |||||      +++|+|+++|++|+|.++|.
T Consensus        36 ~~~~~~i~i~nl~k~y~~----~~~l~~is~~i~~Gei~gLlGpNGa--GKSTL------l~~L~Gl~~p~~G~i~i~G~  103 (340)
T PRK13536         36 SMSTVAIDLAGVSKSYGD----KAVVNGLSFTVASGECFGLLGPNGA--GKSTI------ARMILGMTSPDAGKITVLGV  103 (340)
T ss_pred             cCCceeEEEEEEEEEECC----EEEEeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHHcCCCCCceEEEECCE
Confidence            667777889999999964    4599999999988      999999  56655      67999999999999999999


Q ss_pred             cCCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhc
Q psy7365         118 DIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDN  197 (601)
Q Consensus       118 ~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~  197 (601)
                      ++.......++.+||+||++.+|+.+||.||+.|+...++.+..+...++.++++.+||.+..++++.+||||||||+++
T Consensus       104 ~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~l  183 (340)
T PRK13536        104 PVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTL  183 (340)
T ss_pred             ECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHH
Confidence            98655556678899999999999999999999987777777666666778899999999999999999999999999986


Q ss_pred             hhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCC
Q psy7365         198 VKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVP  277 (601)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  277 (601)
                      |+|                                      ++++                                   
T Consensus       184 A~a--------------------------------------L~~~-----------------------------------  190 (340)
T PRK13536        184 ARA--------------------------------------LIND-----------------------------------  190 (340)
T ss_pred             HHH--------------------------------------HhcC-----------------------------------
Confidence            443                                      3333                                   


Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                      |+++||||||+||||.++..++++|+++.     .+|+|||++||+++++..+||++++|.+|+++..+++..
T Consensus       191 P~lLiLDEPt~gLD~~~r~~l~~~l~~l~-----~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~  258 (340)
T PRK13536        191 PQLLILDEPTTGLDPHARHLIWERLRSLL-----ARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHA  258 (340)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHH-----hCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            48999999999999999999999999983     358999999999999999999999999999998886543

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=5.6e-42  Score=363.22  Aligned_cols=213  Identities=26%  Similarity=0.348  Sum_probs=184.9

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc-
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD-  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~-  122 (601)
                      +.+++|+|.|+..+....+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++... 
T Consensus         2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGa--GKSTL------lr~I~gl~~p~~G~I~i~G~~i~~~~   73 (343)
T TIGR02314         2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGA--GKSTL------IRCVNLLERPTSGSVIVDGQDLTTLS   73 (343)
T ss_pred             EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCceEEEECCEECCcCC
Confidence            35899999996433345799999999988      999999  56665      6799999999999999999998642 


Q ss_pred             h---HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365         123 M---TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK  199 (601)
Q Consensus       123 ~---~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~  199 (601)
                      .   ...++.|||+||++.+|+.+||.||++|+....+.++.+.++++.++++.+||.+..++++.+|||||||||+|||
T Consensus        74 ~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IAR  153 (343)
T TIGR02314        74 NSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIAR  153 (343)
T ss_pred             HHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHH
Confidence            1   2357789999999999999999999999888777777778888999999999999999999999999999998655


Q ss_pred             hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365         200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS  279 (601)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  279 (601)
                      ||+                                      .+                                   |+
T Consensus       154 AL~--------------------------------------~~-----------------------------------P~  160 (343)
T TIGR02314       154 ALA--------------------------------------SN-----------------------------------PK  160 (343)
T ss_pred             HHH--------------------------------------hC-----------------------------------CC
Confidence            432                                      22                                   58


Q ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                      +|+|||||++|||.++..++++|+++.    +..|.|||++||+++++.++||++++|++|+++..|+
T Consensus       161 iLLlDEPts~LD~~t~~~i~~lL~~l~----~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~  224 (343)
T TIGR02314       161 VLLCDEATSALDPATTQSILELLKEIN----RRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGT  224 (343)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence            999999999999999999999999984    2348999999999999999999999999999987664

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=4.2e-42  Score=337.28  Aligned_cols=214  Identities=29%  Similarity=0.496  Sum_probs=191.8

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchH
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMT  124 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~  124 (601)
                      .+++|+|.||+..    |++|+||+|++      +|||||  ||||     | .|||.|+++|++|+|+++|.++..   
T Consensus         4 ~ie~vtK~Fg~k~----av~~isf~v~~G~i~GllG~NGA--GKTT-----t-fRmILglle~~~G~I~~~g~~~~~---   68 (300)
T COG4152           4 EIEGVTKSFGDKK----AVDNISFEVPPGEIFGLLGPNGA--GKTT-----T-FRMILGLLEPTEGEITWNGGPLSQ---   68 (300)
T ss_pred             EEecchhccCcee----eecceeeeecCCeEEEeecCCCC--Cccc-----h-HHHHhccCCccCceEEEcCcchhh---
Confidence            4899999998766    99999999998      999999  5664     3 579999999999999999998843   


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcch
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNN  204 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~  204 (601)
                      ..+++|||+|.+-.+|+.+||.|.+.|.+++.|+++.+++.++..+|+++++....++++.+||.|+|||+.+       
T Consensus        69 ~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQf-------  141 (300)
T COG4152          69 EIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQF-------  141 (300)
T ss_pred             hhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHH-------
Confidence            4577899999999999999999999999999999999999999999999999999999999999999999863       


Q ss_pred             hhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEe
Q psy7365         205 KAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILD  284 (601)
Q Consensus       205 ~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLD  284 (601)
                         |++                            ++|.|                                   +++|||
T Consensus       142 ---isa----------------------------viHeP-----------------------------------eLlILD  155 (300)
T COG4152         142 ---ISA----------------------------VIHEP-----------------------------------ELLILD  155 (300)
T ss_pred             ---HHH----------------------------HhcCC-----------------------------------CEEEec
Confidence               332                            45665                                   899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccccccccc
Q psy7365         285 EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFAR  357 (601)
Q Consensus       285 EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~~~g~  357 (601)
                      ||+|||||...+.+.+.+.++     +.+|.|||++||+|+-++++||++++|..|+.+..|+....+..+++
T Consensus       156 EPFSGLDPVN~elLk~~I~~l-----k~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gk  223 (300)
T COG4152         156 EPFSGLDPVNVELLKDAIFEL-----KEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGK  223 (300)
T ss_pred             CCccCCChhhHHHHHHHHHHH-----HhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcCC
Confidence            999999999999999999998     45799999999999999999999999999999998876555554443

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=1.4e-40  Score=409.32  Aligned_cols=140  Identities=24%  Similarity=0.338  Sum_probs=117.4

Q ss_pred             ccccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCccc-------cccc----CcCChHHHHHH
Q psy7365         371 KSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYS-------DREV----RTLSGGNKRKL  439 (601)
Q Consensus       371 ~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~-------~~~~----~~LSgGqkQRl  439 (601)
                      |+.|||+||++.+|+. |+++||..+.   ..+    ++++.++++..++.+..       |..+    .+||||||||+
T Consensus      1383 R~~I~iVpQdp~LF~g-TIreNIdp~~---~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrL 1454 (1560)
T PTZ00243       1383 RRQFSMIPQDPVLFDG-TVRQNVDPFL---EAS----SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLM 1454 (1560)
T ss_pred             HhcceEECCCCccccc-cHHHHhCccc---CCC----HHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHH
Confidence            3578999999998875 9999996531   112    34577788888775432       3333    57999999999


Q ss_pred             HHHHHHhCC-CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHH
Q psy7365         440 STAIALLGN-TPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  518 (601)
Q Consensus       440 ~lA~AL~~~-P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~  518 (601)
                      +|||||+++ |+|||||||||+||+.+.+.+.+.|++.. +++|||+++|.++.+.. ||||++|++|+|+..|++++|.
T Consensus      1455 aLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243       1455 CMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred             HHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHHHHh-CCEEEEEECCEEEEECCHHHHH
Confidence            999999995 89999999999999999999999999863 47999999999988865 9999999999999999999997


Q ss_pred             HH
Q psy7365         519 SK  520 (601)
Q Consensus       519 ~~  520 (601)
                      ++
T Consensus      1533 ~~ 1534 (1560)
T PTZ00243       1533 MN 1534 (1560)
T ss_pred             hC
Confidence            64

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=5.4e-42  Score=327.91  Aligned_cols=210  Identities=30%  Similarity=0.441  Sum_probs=185.7

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-ch
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DM  123 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~  123 (601)
                      ..++|.|.|++..    +++|+||+|.+      +|||||  ||||.      ..|+.|+.+|++|.|.++|.|++. ++
T Consensus         6 ~a~~l~K~y~kr~----Vv~~Vsl~v~~GEiVGLLGPNGA--GKTT~------Fymi~Glv~~d~G~i~ld~~diT~lPm   73 (243)
T COG1137           6 VAENLAKSYKKRK----VVNDVSLEVNSGEIVGLLGPNGA--GKTTT------FYMIVGLVRPDSGKILLDDEDITKLPM   73 (243)
T ss_pred             EehhhhHhhCCee----eeeeeeEEEcCCcEEEEECCCCC--CceeE------EEEEEEEEecCCceEEECCcccccCCh
Confidence            3789999998866    99999999988      999999  67753      689999999999999999999986 33


Q ss_pred             -HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChH--HHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh
Q psy7365         124 -TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD--LAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       124 -~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                       ...|.+|||+||+++.|..+||+||+...++....++.  +.+.+++++|+.|+|.+.++++..+||||||+|+.||||
T Consensus        74 ~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARa  153 (243)
T COG1137          74 HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARA  153 (243)
T ss_pred             HHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHH
Confidence             34667899999999999999999999999988876655  444567899999999999999999999999999997654


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      |..                                                                         .|++
T Consensus       154 La~-------------------------------------------------------------------------~P~f  160 (243)
T COG1137         154 LAA-------------------------------------------------------------------------NPKF  160 (243)
T ss_pred             Hhc-------------------------------------------------------------------------CCCE
Confidence            322                                                                         2689


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                      ++||||++|+||.+..++.++++.++     ..|..|+++.|++.|...+|||.++|.+|++.+.|++..
T Consensus       161 iLLDEPFAGVDPiaV~dIq~iI~~L~-----~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~e  225 (243)
T COG1137         161 ILLDEPFAGVDPIAVIDIQRIIKHLK-----DRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEE  225 (243)
T ss_pred             EEecCCccCCCchhHHHHHHHHHHHH-----hCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHH
Confidence            99999999999999999999999983     579999999999999999999999999999999998754

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.8e-41  Score=359.31  Aligned_cols=211  Identities=22%  Similarity=0.330  Sum_probs=184.6

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      ++.+++|++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++...
T Consensus         6 ~l~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~llGpsGs--GKSTL------Lr~IaGl~~p~~G~I~~~g~~i~~~   73 (351)
T PRK11432          6 FVVLKNITKRFGS----NTVIDNLNLTIKQGTMVTLLGPSGC--GKTTV------LRLVAGLEKPTEGQIFIDGEDVTHR   73 (351)
T ss_pred             EEEEEeEEEEECC----eEEEeeeEEEEcCCCEEEEECCCCC--cHHHH------HHHHHCCCCCCceEEEECCEECCCC
Confidence            4558999999964    4589999999987      999999  56655      5799999999999999999998643


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhc
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWF  202 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~  202 (601)
                      . ..++.+|||||++.+|+++||+||+.|+...++.++.+.++++.++++.+||.+..++++.+|||||||||++|||| 
T Consensus        74 ~-~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL-  151 (351)
T PRK11432         74 S-IQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARAL-  151 (351)
T ss_pred             C-HHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH-
Confidence            2 23578999999999999999999999998877888888888999999999999999999999999999999865433 


Q ss_pred             chhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEE
Q psy7365         203 NNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVI  282 (601)
Q Consensus       203 ~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~li  282 (601)
                                                           +.+                                   |++|+
T Consensus       152 -------------------------------------~~~-----------------------------------P~lLL  159 (351)
T PRK11432        152 -------------------------------------ILK-----------------------------------PKVLL  159 (351)
T ss_pred             -------------------------------------HcC-----------------------------------CCEEE
Confidence                                                 233                                   58999


Q ss_pred             EecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       283 LDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                      |||||++||+..+..+++.|+++.    +..|+|+|++|||.+++..+||++++|.+|++...+++.
T Consensus       160 LDEP~s~LD~~~r~~l~~~l~~l~----~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~  222 (351)
T PRK11432        160 FDEPLSNLDANLRRSMREKIRELQ----QQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQ  222 (351)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence            999999999999999999999884    235899999999999999999999999999998877543

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.2e-41  Score=359.21  Aligned_cols=210  Identities=24%  Similarity=0.365  Sum_probs=183.8

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM  123 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~  123 (601)
                      ..++||++.|+.    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|+++....
T Consensus         5 l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~GpsGs--GKSTL------Lr~iaGl~~p~~G~I~i~g~~~~~~~   72 (353)
T TIGR03265         5 LSIDNIRKRFGA----FTALKDISLSVKKGEFVCLLGPSGC--GKTTL------LRIIAGLERQTAGTIYQGGRDITRLP   72 (353)
T ss_pred             EEEEEEEEEeCC----eEEEEeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHHCCCCCCceEEEECCEECCCCC
Confidence            458999999864    4589999999987      999999  56655      67999999999999999999986422


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcc
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFN  203 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~  203 (601)
                      . .++.+|||||++.+||++||+||+.|+....+.++.+.+.+++++++.+||++..++++.+|||||||||++||||  
T Consensus        73 ~-~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL--  149 (353)
T TIGR03265        73 P-QKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARAL--  149 (353)
T ss_pred             H-HHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHH--
Confidence            2 3568999999999999999999999998877777788888999999999999999999999999999999865433  


Q ss_pred             hhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEE
Q psy7365         204 NKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVIL  283 (601)
Q Consensus       204 ~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liL  283 (601)
                                                          +.+                                   |++++|
T Consensus       150 ------------------------------------~~~-----------------------------------P~llLL  158 (353)
T TIGR03265       150 ------------------------------------ATS-----------------------------------PGLLLL  158 (353)
T ss_pred             ------------------------------------hcC-----------------------------------CCEEEE
Confidence                                                233                                   589999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       284 DEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                      ||||++||+..+..+++.|+++.    +..|.|+|++|||.+++..+||++++|.+|++...|++.
T Consensus       159 DEP~s~LD~~~r~~l~~~L~~l~----~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~  220 (353)
T TIGR03265       159 DEPLSALDARVREHLRTEIRQLQ----RRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQ  220 (353)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence            99999999999999999999884    335899999999999999999999999999998877653

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.6e-41  Score=359.22  Aligned_cols=210  Identities=21%  Similarity=0.287  Sum_probs=182.2

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM  123 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~  123 (601)
                      ..+++|++.|.   ++..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++....
T Consensus         4 l~i~~l~~~~~---~~~~~l~~vsl~i~~Ge~~~llG~sGs--GKSTL------Lr~iaGl~~p~~G~I~~~g~~i~~~~   72 (356)
T PRK11650          4 LKLQAVRKSYD---GKTQVIKGIDLDVADGEFIVLVGPSGC--GKSTL------LRMVAGLERITSGEIWIGGRVVNELE   72 (356)
T ss_pred             EEEEeEEEEeC---CCCEEEeeeeEEEcCCCEEEEECCCCC--cHHHH------HHHHHCCCCCCceEEEECCEECCCCC
Confidence            45899999983   124599999999987      999999  56655      57999999999999999999986422


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcc
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFN  203 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~  203 (601)
                      . .++.+|||||++.+|+++||+||+.|+....+.++.+.++++.++++.+||++..++++.+|||||||||+|||||+ 
T Consensus        73 ~-~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~-  150 (356)
T PRK11650         73 P-ADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIV-  150 (356)
T ss_pred             H-HHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHh-
Confidence            2 34789999999999999999999999987777777777888999999999999999999999999999998654432 


Q ss_pred             hhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEE
Q psy7365         204 NKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVIL  283 (601)
Q Consensus       204 ~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liL  283 (601)
                                                           .+                                   |++|+|
T Consensus       151 -------------------------------------~~-----------------------------------P~llLL  158 (356)
T PRK11650        151 -------------------------------------RE-----------------------------------PAVFLF  158 (356)
T ss_pred             -------------------------------------cC-----------------------------------CCEEEE
Confidence                                                 22                                   589999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       284 DEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      ||||++||+..+..+++.|+++.    +..|.|+|++|||.+++..+||++++|.+|+++..|++
T Consensus       159 DEP~s~LD~~~r~~l~~~l~~l~----~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~  219 (356)
T PRK11650        159 DEPLSNLDAKLRVQMRLEIQRLH----RRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTP  219 (356)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCH
Confidence            99999999999999999999883    23589999999999999999999999999999877754

>KOG0059|consensus

Probab=100.00  E-value=3.8e-41  Score=395.68  Aligned_cols=228  Identities=51%  Similarity=0.840  Sum_probs=210.8

Q ss_pred             ccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEE
Q psy7365         373 YIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLI  452 (601)
Q Consensus       373 ~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lL  452 (601)
                      .+|||||++.+++.+|.+|++.++++++|+++++.++.++.+++.++|.++++++++.||||||||+++|.|++.+|+++
T Consensus       641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi  720 (885)
T KOG0059|consen  641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVI  720 (885)
T ss_pred             hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEE
Confidence            47999999999999999999999999999999899999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHhCCceEEEEEec
Q psy7365         453 FLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCA  532 (601)
Q Consensus       453 lLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~~~~~~l~i~~~  532 (601)
                      +|||||+|+||.+|+.+|++|.+++++|+.||+|||.|+|+|.+|||+++|.+|++.|.|+++++|++||.+|.+++++.
T Consensus       721 ~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~gy~l~~~~~  800 (885)
T KOG0059|consen  721 LLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRYGSGYTLTVRIK  800 (885)
T ss_pred             EecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhcCCcEEEEEEEC
Confidence            99999999999999999999999998888999999999999999999999999999999999999999999999999987


Q ss_pred             CCCc-hhHHHHHhhcCCCceeEEeeCcEEEEEEcCCc-ccHHHHHHHHHHccccCCCeeEEEecCCCCCCC
Q psy7365         533 EGRS-ADAQTYLSLNLPVADLVETHATQLQYRISGAV-SDLGALFRTLESAKTEAGLIVDYSLSQTSLEDS  601 (601)
Q Consensus       533 ~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~L~~~~~~~~~i~~~~v~~~sLEdv  601 (601)
                      .... ..+..++...+|++...+.+...+++.++.++ ...+++|..++......+ +.+|++++.+||||
T Consensus       801 ~~~~~~~v~~~~~~~~p~a~~~~~~~~~~~~~ip~~~~~~~~~vF~~le~~~~~~~-i~dyslsq~tLe~V  870 (885)
T KOG0059|consen  801 ELPEVSEVEKLLQNRFPGAVLKERHAGLLAFEIPKDEVVSLSEVFLALEKAKESFG-IEDYSLSQTTLEDV  870 (885)
T ss_pred             CCcccchHHHHHHHhCCCcchhhhhhceEEEEcccchhhHHHHHHHHHHHHHHhcC-HHHHHHHHhhHHHH
Confidence            5333 35667778889999888888888899998554 456689999998887777 99999999999985

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.3e-41  Score=321.14  Aligned_cols=205  Identities=26%  Similarity=0.389  Sum_probs=180.1

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTT  125 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~  125 (601)
                      +++++-.|...+  ..+++|+||++.+      +|||||  |||||      .++++|+.+|+.|+|.++|+++..+-  
T Consensus         6 ~~~~sl~y~g~~--~~~le~vsL~ia~ge~vv~lGpSGc--GKTTL------Lnl~AGf~~P~~G~i~l~~r~i~gPg--   73 (259)
T COG4525           6 VSHLSLSYEGKP--RSALEDVSLTIASGELVVVLGPSGC--GKTTL------LNLIAGFVTPSRGSIQLNGRRIEGPG--   73 (259)
T ss_pred             hhheEEecCCcc--hhhhhccceeecCCCEEEEEcCCCc--cHHHH------HHHHhcCcCcccceEEECCEeccCCC--
Confidence            456777765443  6699999999988      999999  57665      57999999999999999999997653  


Q ss_pred             hcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchh
Q psy7365         126 IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNK  205 (601)
Q Consensus       126 ~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~  205 (601)
                        ..-|+|||++.++||+||.+|++|+++..|+++.+..+++.+++..+||.+..++++++||||||||+.+||||    
T Consensus        74 --aergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARAL----  147 (259)
T COG4525          74 --AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARAL----  147 (259)
T ss_pred             --ccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHh----
Confidence              23499999999999999999999999999999999999999999999999999999999999999999865432    


Q ss_pred             hHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEec
Q psy7365         206 AWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDE  285 (601)
Q Consensus       206 ~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDE  285 (601)
                                                        ..                                   .|++|+|||
T Consensus       148 ----------------------------------a~-----------------------------------eP~~LlLDE  158 (259)
T COG4525         148 ----------------------------------AV-----------------------------------EPQLLLLDE  158 (259)
T ss_pred             ----------------------------------hc-----------------------------------CcceEeecC
Confidence                                              12                                   368999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEec--CCccccccC
Q psy7365         286 PTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA--AGKLQCCGS  347 (601)
Q Consensus       286 PtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~--~GkIv~~G~  347 (601)
                      |++.||.-+|+.+.++|.++|.    ..|+.++++||+++|+..+++|+++|.  .|+++....
T Consensus       159 PfgAlDa~tRe~mQelLldlw~----~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~  218 (259)
T COG4525         159 PFGALDALTREQMQELLLDLWQ----ETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLP  218 (259)
T ss_pred             chhhHHHHHHHHHHHHHHHHHH----HhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecC
Confidence            9999999999999999999984    479999999999999999999999996  577766443

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=9e-41  Score=329.72  Aligned_cols=214  Identities=27%  Similarity=0.359  Sum_probs=186.7

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-  121 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-  121 (601)
                      +..+++|+|.||++.    |++||||++.+      +||||+  ||||+      .++|+|+++|++|+|+++|++++. 
T Consensus         4 lL~v~~l~k~FGGl~----Al~~Vsl~v~~Gei~~LIGPNGA--GKTTl------fNlitG~~~P~~G~v~~~G~~it~l   71 (250)
T COG0411           4 LLEVRGLSKRFGGLT----AVNDVSLEVRPGEIVGLIGPNGA--GKTTL------FNLITGFYKPSSGTVIFRGRDITGL   71 (250)
T ss_pred             eeeeccceeecCCEE----EEeceeEEEcCCeEEEEECCCCC--Cceee------eeeecccccCCCceEEECCcccCCC
Confidence            345899999999877    99999999988      999999  68876      789999999999999999999975 


Q ss_pred             -chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhc-------CC-----ChHHHHHHHHHHHHHcCCCcccCCccccCC
Q psy7365         122 -DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK-------QV-----PKDLAQLEISNMIGDLGIPHKRTSLANTLS  188 (601)
Q Consensus       122 -~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~-------~~-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS  188 (601)
                       +....|.+|+..||++.+|++|||.||+..+....       +.     ..++..+++.++|+.+||.+..++++++||
T Consensus        72 ~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~Ls  151 (250)
T COG0411          72 PPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLS  151 (250)
T ss_pred             CHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCC
Confidence             34456789999999999999999999998875422       11     345677889999999999999999999999


Q ss_pred             hHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHH
Q psy7365         189 GGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVT  268 (601)
Q Consensus       189 gG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~  268 (601)
                      +|||+||.|||||+                                      .                           
T Consensus       152 yG~qR~LEIArALa--------------------------------------~---------------------------  166 (250)
T COG0411         152 YGQQRRLEIARALA--------------------------------------T---------------------------  166 (250)
T ss_pred             hhHhHHHHHHHHHh--------------------------------------c---------------------------
Confidence            99999998654332                                      2                           


Q ss_pred             HHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         269 VLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       269 ~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                              .|++|+||||.+||.|....++.++|+++.    +..|.||++++|||+.+..+||||++|..|+++++|++
T Consensus       167 --------~P~lLLLDEPaAGln~~e~~~l~~~i~~i~----~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P  234 (250)
T COG0411         167 --------QPKLLLLDEPAAGLNPEETEELAELIRELR----DRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTP  234 (250)
T ss_pred             --------CCCEEEecCccCCCCHHHHHHHHHHHHHHH----hcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCH
Confidence                    369999999999999999999999999994    33579999999999999999999999999999999987


Q ss_pred             ccc
Q psy7365         349 VFL  351 (601)
Q Consensus       349 ~lL  351 (601)
                      ...
T Consensus       235 ~eV  237 (250)
T COG0411         235 EEV  237 (250)
T ss_pred             HHH
Confidence            543

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=1.6e-39  Score=399.40  Aligned_cols=138  Identities=20%  Similarity=0.322  Sum_probs=117.4

Q ss_pred             cccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccc-------ccc----CcCChHHHHHHH
Q psy7365         372 SYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSD-------REV----RTLSGGNKRKLS  440 (601)
Q Consensus       372 ~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~-------~~~----~~LSgGqkQRl~  440 (601)
                      ++++|+||++.+|+. |+++||..+.   ..    .++++.++|+..+|.+...       ..+    ..||||||||++
T Consensus      1292 ~~is~IpQdp~LF~G-TIR~NLdp~~---~~----tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~ 1363 (1490)
T TIGR01271      1292 KAFGVIPQKVFIFSG-TFRKNLDPYE---QW----SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMC 1363 (1490)
T ss_pred             hceEEEeCCCccCcc-CHHHHhCccc---CC----CHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHH
Confidence            368999999999885 9999996532   11    2346778888888754332       222    369999999999


Q ss_pred             HHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         441 TAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       441 lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      |||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||++||.++.+.. ||||++|++|+|+..|+|++|.+
T Consensus      1364 LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271      1364 LARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEALLE-CQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred             HHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHh-CCEEEEEECCEEEEeCCHHHHHc
Confidence            9999999999999999999999999999999999864 47999999999998876 99999999999999999999975

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=4.3e-41  Score=339.46  Aligned_cols=210  Identities=25%  Similarity=0.308  Sum_probs=182.0

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-ch
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DM  123 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~  123 (601)
                      .++||+.+|++    ...++|+||++.+      +|||||  |||||      .|+|+|+++|.+|+|.++|+++.+ +.
T Consensus         4 ~~~~ls~~y~~----~~il~~ls~~i~~G~i~~iiGpNG~--GKSTL------Lk~l~g~l~p~~G~V~l~g~~i~~~~~   71 (258)
T COG1120           4 EVENLSFGYGG----KPILDDLSFSIPKGEITGILGPNGS--GKSTL------LKCLAGLLKPKSGEVLLDGKDIASLSP   71 (258)
T ss_pred             EEEEEEEEECC----eeEEecceEEecCCcEEEEECCCCC--CHHHH------HHHHhccCCCCCCEEEECCCchhhcCH
Confidence            47899999874    4599999999988      999999  57665      679999999999999999999975 55


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhh----cCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL----KQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK  199 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~  199 (601)
                      .++.+.+|||||.+...+.+||+|-+.++..-    ++.+.++.++.+.++|+.+|+.++.+|.+.+||||||||+.|||
T Consensus        72 kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iAr  151 (258)
T COG1120          72 KELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIAR  151 (258)
T ss_pred             HHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHH
Confidence            67888999999999888899999999998643    22234445567899999999999999999999999999986443


Q ss_pred             hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365         200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS  279 (601)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  279 (601)
                      |                                      ++++                                   |+
T Consensus       152 A--------------------------------------LaQ~-----------------------------------~~  158 (258)
T COG1120         152 A--------------------------------------LAQE-----------------------------------TP  158 (258)
T ss_pred             H--------------------------------------HhcC-----------------------------------CC
Confidence            3                                      2233                                   58


Q ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                      +++|||||++||+..+.+++++++++.    +.+|+|+|++.||++.+.++||++++|.+|++++.|++.
T Consensus       159 iLLLDEPTs~LDi~~Q~evl~ll~~l~----~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~  224 (258)
T COG1120         159 ILLLDEPTSHLDIAHQIEVLELLRDLN----REKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPE  224 (258)
T ss_pred             EEEeCCCccccCHHHHHHHHHHHHHHH----HhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcc
Confidence            999999999999999999999999994    356999999999999999999999999999999999864

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=1.2e-40  Score=355.63  Aligned_cols=209  Identities=26%  Similarity=0.374  Sum_probs=182.5

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCe--eEEEEccccCCCc
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSS--GTAKIYDHDIRTD  122 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~--G~v~~~g~~~~~~  122 (601)
                      .+++|+|.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++  |+|.++|.++...
T Consensus         7 ~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~llGpsGs--GKSTL------Lr~iaGl~~p~~~~G~i~~~g~~~~~~   74 (362)
T TIGR03258         7 RIDHLRVAYGA----NTVLDDLSLEIEAGELLALIGKSGC--GKTTL------LRAIAGFVKAAGLTGRIAIADRDLTHA   74 (362)
T ss_pred             EEEEEEEEECC----eEEEeeeEEEECCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCCCEEEEECCEECCCC
Confidence            48899999864    3599999999977      999999  56655      579999999999  9999999988542


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhc
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWF  202 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~  202 (601)
                      .. .++.+|||||++.+|+++||+||+.|+....+.++.+.+.++.++++.+||++..++++.+|||||||||++||||+
T Consensus        75 ~~-~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~  153 (362)
T TIGR03258        75 PP-HKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIA  153 (362)
T ss_pred             CH-HHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHh
Confidence            22 35689999999999999999999999988778887788889999999999999999999999999999998654432


Q ss_pred             chhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEE
Q psy7365         203 NNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVI  282 (601)
Q Consensus       203 ~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~li  282 (601)
                                                            .+                                   |++|+
T Consensus       154 --------------------------------------~~-----------------------------------P~llL  160 (362)
T TIGR03258       154 --------------------------------------IE-----------------------------------PDVLL  160 (362)
T ss_pred             --------------------------------------cC-----------------------------------CCEEE
Confidence                                                  32                                   58999


Q ss_pred             EecCCCCCCHHHHHHHHHHHHHHhhhccccC-CcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLS-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       283 LDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~-G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                      |||||+|||+..+..+++.|+++.    +.. |.|+|++|||++++..+|||+++|.+|+++..|++.
T Consensus       161 LDEP~s~LD~~~r~~l~~~l~~l~----~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~  224 (362)
T TIGR03258       161 LDEPLSALDANIRANMREEIAALH----EELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQ  224 (362)
T ss_pred             EcCccccCCHHHHHHHHHHHHHHH----HhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence            999999999999999999999884    223 799999999999999999999999999998877653

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=1.7e-40  Score=355.87  Aligned_cols=209  Identities=24%  Similarity=0.324  Sum_probs=182.2

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM  123 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~  123 (601)
                      ..+++|++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++....
T Consensus        15 L~l~~l~~~~~~----~~~l~~vsl~i~~Ge~~~LlGpsGs--GKSTL------Lr~IaGl~~p~~G~I~~~g~~i~~~~   82 (375)
T PRK09452         15 VELRGISKSFDG----KEVISNLDLTINNGEFLTLLGPSGC--GKTTV------LRLIAGFETPDSGRIMLDGQDITHVP   82 (375)
T ss_pred             EEEEEEEEEECC----eEEEeeeEEEEeCCCEEEEECCCCC--cHHHH------HHHHhCCCCCCceEEEECCEECCCCC
Confidence            458999999864    4589999999987      999999  56655      57999999999999999999985422


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcc
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFN  203 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~  203 (601)
                       ..++.+|||||++.+|+++||.||+.|+....+.++.+.++++.++++.+||++..++++.+|||||||||++|||+  
T Consensus        83 -~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL--  159 (375)
T PRK09452         83 -AENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAV--  159 (375)
T ss_pred             -HHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH--
Confidence             23568999999999999999999999988777777777778899999999999999999999999999999865432  


Q ss_pred             hhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEE
Q psy7365         204 NKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVIL  283 (601)
Q Consensus       204 ~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liL  283 (601)
                                                          +.+                                   |++|+|
T Consensus       160 ------------------------------------~~~-----------------------------------P~llLL  168 (375)
T PRK09452        160 ------------------------------------VNK-----------------------------------PKVLLL  168 (375)
T ss_pred             ------------------------------------hcC-----------------------------------CCEEEE
Confidence                                                233                                   589999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       284 DEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      ||||++||+..+..+++.|+++.    +..|.|+|++|||.+++..+||++++|.+|++...+++
T Consensus       169 DEP~s~LD~~~r~~l~~~L~~l~----~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~  229 (375)
T PRK09452        169 DESLSALDYKLRKQMQNELKALQ----RKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTP  229 (375)
T ss_pred             eCCCCcCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence            99999999999999999999984    23589999999999999999999999999999877754

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=3.7e-40  Score=351.43  Aligned_cols=199  Identities=26%  Similarity=0.399  Sum_probs=175.3

Q ss_pred             ccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-chHHh----cccEEEE
Q psy7365          65 DSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DMTTI----RRSLGVC  133 (601)
Q Consensus        65 ~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~~~~----~~~ig~v  133 (601)
                      +..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. +...+    ++.+|||
T Consensus         5 ~~~~l~~vs~~i~~Gei~~l~G~sGs--GKSTL------Lr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v   76 (363)
T TIGR01186         5 GKKGVNDADLAIAKGEIFVIMGLSGS--GKSTT------VRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMV   76 (363)
T ss_pred             CceeEEeeEEEEcCCCEEEEECCCCC--hHHHH------HHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEE
Confidence            45699999999988      999999  56655      579999999999999999999864 23333    6789999


Q ss_pred             ccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHH
Q psy7365         134 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSF  213 (601)
Q Consensus       134 ~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~  213 (601)
                      ||++.+|+++||.||+.|+....+.++.+..+++.++++.+||++..++++.+|||||||||++||||+           
T Consensus        77 ~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~-----------  145 (363)
T TIGR01186        77 FQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALA-----------  145 (363)
T ss_pred             ECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHh-----------
Confidence            999999999999999999988888887778889999999999999999999999999999998655433           


Q ss_pred             hhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHH
Q psy7365         214 MNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPY  293 (601)
Q Consensus       214 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~  293 (601)
                                                 .+                                   |+++||||||++|||.
T Consensus       146 ---------------------------~~-----------------------------------p~iLLlDEP~saLD~~  163 (363)
T TIGR01186       146 ---------------------------AE-----------------------------------PDILLMDEAFSALDPL  163 (363)
T ss_pred             ---------------------------cC-----------------------------------CCEEEEeCCcccCCHH
Confidence                                       22                                   5899999999999999


Q ss_pred             HHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         294 SRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       294 ~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      ++..+.+.+.+++    +..|+|||++|||++++..+|||+++|.+|+++..|++
T Consensus       164 ~r~~l~~~l~~l~----~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~  214 (363)
T TIGR01186       164 IRDSMQDELKKLQ----ATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTP  214 (363)
T ss_pred             HHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCH
Confidence            9999999999884    23589999999999999999999999999999877754

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=2.9e-40  Score=345.18  Aligned_cols=198  Identities=35%  Similarity=0.583  Sum_probs=174.0

Q ss_pred             cceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCC
Q psy7365          66 SYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNAL  139 (601)
Q Consensus        66 ~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~  139 (601)
                      .++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.......++.+||+||++.+
T Consensus         6 ~~~l~~vs~~i~~Ge~~~l~G~NGa--GKSTL------l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~   77 (302)
T TIGR01188         6 FKAVDGVNFKVREGEVFGFLGPNGA--GKTTT------IRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASV   77 (302)
T ss_pred             eeEEeeeeEEEcCCcEEEEECCCCC--CHHHH------HHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCC
Confidence            4699999999988      999999  56655      679999999999999999998865444567789999999999


Q ss_pred             CCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhh
Q psy7365         140 FDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANN  219 (601)
Q Consensus       140 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~  219 (601)
                      |+.+||.||+.|+...++.+..+.+.++.++++.+||.+..++++.+||||||||+++|+|                   
T Consensus        78 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a-------------------  138 (302)
T TIGR01188        78 DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAAS-------------------  138 (302)
T ss_pred             CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHH-------------------
Confidence            9999999999998887787766677789999999999999999999999999999986543                   


Q ss_pred             hhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHH
Q psy7365         220 VILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIW  299 (601)
Q Consensus       220 ~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~  299 (601)
                                         ++++                                   |++|||||||+||||.+++.++
T Consensus       139 -------------------l~~~-----------------------------------p~lllLDEPt~gLD~~~~~~l~  164 (302)
T TIGR01188       139 -------------------LIHQ-----------------------------------PDVLFLDEPTTGLDPRTRRAIW  164 (302)
T ss_pred             -------------------HhcC-----------------------------------CCEEEEeCCCcCCCHHHHHHHH
Confidence                               3333                                   5899999999999999999999


Q ss_pred             HHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         300 ELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       300 ~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                      ++|+++.     .+|+|||++||+++++..+||++++|.+|+++..++..
T Consensus       165 ~~l~~~~-----~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~  209 (302)
T TIGR01188       165 DYIRALK-----EEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPE  209 (302)
T ss_pred             HHHHHHH-----hCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence            9999873     35899999999999999999999999999998877543

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=3.1e-40  Score=345.11  Aligned_cols=210  Identities=30%  Similarity=0.512  Sum_probs=181.1

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      ++.+++|++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++...
T Consensus         4 ~i~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~l~G~NGa--GKSTL------l~~l~Gl~~p~~G~i~~~g~~~~~~   71 (303)
T TIGR01288         4 AIDLVGVSKSYGD----KVVVNDLSFTIARGECFGLLGPNGA--GKSTI------ARMLLGMISPDRGKITVLGEPVPSR   71 (303)
T ss_pred             EEEEEeEEEEeCC----eEEEcceeEEEcCCcEEEEECCCCC--CHHHH------HHHHhCCCCCCceEEEECCEECccc
Confidence            3558999999864    4599999999988      999999  56655      6799999999999999999988654


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhc
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWF  202 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~  202 (601)
                      ....++.+||+||++.+|+.+||.||+.++...++.+..+.+.++.++++.+|+.+..++++.+||||||||+++|+|| 
T Consensus        72 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al-  150 (303)
T TIGR01288        72 ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARAL-  150 (303)
T ss_pred             HHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHH-
Confidence            4456778999999999999999999999876666666566667788999999999999999999999999999865432 


Q ss_pred             chhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEE
Q psy7365         203 NNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVI  282 (601)
Q Consensus       203 ~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~li  282 (601)
                                                           +++                                   |+++|
T Consensus       151 -------------------------------------~~~-----------------------------------p~lll  158 (303)
T TIGR01288       151 -------------------------------------IND-----------------------------------PQLLI  158 (303)
T ss_pred             -------------------------------------hcC-----------------------------------CCEEE
Confidence                                                 233                                   58999


Q ss_pred             EecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       283 LDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      |||||+|||+.++..++++|+++.     .+|+|||++||+++++..+||++++|.+|+++..+++
T Consensus       159 LDEPt~gLD~~~~~~l~~~l~~~~-----~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~  219 (303)
T TIGR01288       159 LDEPTTGLDPHARHLIWERLRSLL-----ARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRP  219 (303)
T ss_pred             EeCCCcCCCHHHHHHHHHHHHHHH-----hCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence            999999999999999999999873     3589999999999999999999999999999877754

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=3.9e-40  Score=344.11  Aligned_cols=209  Identities=27%  Similarity=0.460  Sum_probs=183.6

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchH
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMT  124 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~  124 (601)
                      .++++++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.....
T Consensus         4 ~~~~l~~~~~~----~~~l~~is~~i~~Gei~~l~G~NGa--GKTTL------l~~l~Gl~~~~~G~i~i~g~~~~~~~~   71 (301)
T TIGR03522         4 RVSSLTKLYGT----QNALDEVSFEAQKGRIVGFLGPNGA--GKSTT------MKIITGYLPPDSGSVQVCGEDVLQNPK   71 (301)
T ss_pred             EEEEEEEEECC----EEEEEEeEEEEeCCeEEEEECCCCC--CHHHH------HHHHhCCCCCCceEEEECCEEcccChH
Confidence            48999999863    4599999999988      999999  56655      679999999999999999999866555


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcch
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNN  204 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~  204 (601)
                      .+++.+||+||++.+|+++||.||+.|+...++.+.++..+++.++++.+||.+..++++.+||||||||+++|+|    
T Consensus        72 ~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~a----  147 (301)
T TIGR03522        72 EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQA----  147 (301)
T ss_pred             HHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHH----
Confidence            6678899999999999999999999998888887767677788999999999999999999999999999985443    


Q ss_pred             hhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEe
Q psy7365         205 KAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILD  284 (601)
Q Consensus       205 ~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLD  284 (601)
                                                        ++++                                   |+++|||
T Consensus       148 ----------------------------------l~~~-----------------------------------p~lliLD  158 (301)
T TIGR03522       148 ----------------------------------LIHD-----------------------------------PKVLILD  158 (301)
T ss_pred             ----------------------------------HhcC-----------------------------------CCEEEEc
Confidence                                              3333                                   4899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         285 EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       285 EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                      |||+||||.+++.+++.|+++     + +++|||++||+++++..+|||+++|.+|++...|+...
T Consensus       159 EPt~gLD~~~~~~l~~~l~~~-----~-~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~  218 (301)
T TIGR03522       159 EPTTGLDPNQLVEIRNVIKNI-----G-KDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDE  218 (301)
T ss_pred             CCcccCCHHHHHHHHHHHHHh-----c-CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            999999999999999999987     2 36999999999999999999999999999988776543

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.1e-41  Score=328.23  Aligned_cols=216  Identities=26%  Similarity=0.374  Sum_probs=188.4

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT  121 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~  121 (601)
                      +++.+++|++.|.   ++.++|+||||++.+      +||||+  |||||      .|+|+|+..|++|+|.++|.++..
T Consensus         2 ~~i~~~nl~k~yp---~~~~aL~~Vnl~I~~GE~VaiIG~SGa--GKSTL------LR~lngl~d~t~G~i~~~g~~i~~   70 (258)
T COG3638           2 MMIEVKNLSKTYP---GGHQALKDVNLEINQGEMVAIIGPSGA--GKSTL------LRSLNGLVDPTSGEILFNGVQITK   70 (258)
T ss_pred             ceEEEeeeeeecC---CCceeeeeEeEEeCCCcEEEEECCCCC--cHHHH------HHHHhcccCCCcceEEecccchhc
Confidence            3566999999973   456799999999988      999999  56665      679999999999999999998864


Q ss_pred             ----chHHhcccEEEEccCCCCCCCCCHHHHHHHhH--------hhcCCChHHHHHHHHHHHHHcCCCcccCCccccCCh
Q psy7365         122 ----DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYS--------QLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSG  189 (601)
Q Consensus       122 ----~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~--------~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg  189 (601)
                          .....|+.+||+||++.+.+.++|.+|+..+.        .++|+...+.+.++-++|+++||.++..+++.+|||
T Consensus        71 ~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSG  150 (258)
T COG3638          71 LKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSG  150 (258)
T ss_pred             cchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCc
Confidence                34556789999999999999999999998654        356777677788889999999999999999999999


Q ss_pred             HHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHH
Q psy7365         190 GMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTV  269 (601)
Q Consensus       190 G~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~  269 (601)
                      ||||||+|||||+                                      ++                           
T Consensus       151 GQQQRVaIARaL~--------------------------------------Q~---------------------------  165 (258)
T COG3638         151 GQQQRVAIARALV--------------------------------------QQ---------------------------  165 (258)
T ss_pred             chhHHHHHHHHHh--------------------------------------cC---------------------------
Confidence            9999998765443                                      33                           


Q ss_pred             HHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         270 LFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       270 ~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                              |++++-|||+++|||.+.+.+++.|+++.    +..|.|+|+.-|+++.+.++|||++-|.+|+++.+|++.
T Consensus       166 --------pkiILADEPvasLDp~~a~~Vm~~l~~in----~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~  233 (258)
T COG3638         166 --------PKIILADEPVASLDPESAKKVMDILKDIN----QEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPAS  233 (258)
T ss_pred             --------CCEEecCCcccccChhhHHHHHHHHHHHH----HHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChh
Confidence                    58999999999999999999999999994    457999999999999999999999999999999999765


Q ss_pred             cc
Q psy7365         350 FL  351 (601)
Q Consensus       350 lL  351 (601)
                      .+
T Consensus       234 el  235 (258)
T COG3638         234 EL  235 (258)
T ss_pred             hh
Confidence            43

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.7e-40  Score=353.66  Aligned_cols=211  Identities=25%  Similarity=0.355  Sum_probs=183.6

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      +..++++++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+.+|++|+|.++|+++...
T Consensus        19 ~l~l~~v~~~~~~----~~~l~~vsl~i~~Ge~~~llGpsGs--GKSTL------Lr~IaGl~~p~~G~I~i~g~~i~~~   86 (377)
T PRK11607         19 LLEIRNLTKSFDG----QHAVDDVSLTIYKGEIFALLGASGC--GKSTL------LRMLAGFEQPTAGQIMLDGVDLSHV   86 (377)
T ss_pred             eEEEEeEEEEECC----EEEEeeeEEEEcCCCEEEEECCCCC--cHHHH------HHHHhCCCCCCceEEEECCEECCCC
Confidence            4569999999864    3599999999987      999999  56655      5799999999999999999988542


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhc
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWF  202 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~  202 (601)
                      . ..++.+||+||++.+|+++||.||+.|+....+.++.+.++++.++++.+||.+..++++.+|||||||||+||||| 
T Consensus        87 ~-~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL-  164 (377)
T PRK11607         87 P-PYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSL-  164 (377)
T ss_pred             C-HHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH-
Confidence            2 24678999999999999999999999998777777777888999999999999999999999999999999865433 


Q ss_pred             chhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEE
Q psy7365         203 NNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVI  282 (601)
Q Consensus       203 ~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~li  282 (601)
                                                           +.+                                   |++|+
T Consensus       165 -------------------------------------~~~-----------------------------------P~lLL  172 (377)
T PRK11607        165 -------------------------------------AKR-----------------------------------PKLLL  172 (377)
T ss_pred             -------------------------------------hcC-----------------------------------CCEEE
Confidence                                                 233                                   58999


Q ss_pred             EecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       283 LDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                      |||||++||+..+..+++.|+++.    +..|.|+|++|||.+++..+|||+++|.+|++...|++.
T Consensus       173 LDEP~s~LD~~~r~~l~~~l~~l~----~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~  235 (377)
T PRK11607        173 LDEPMGALDKKLRDRMQLEVVDIL----ERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPE  235 (377)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHH
Confidence            999999999999999999998874    235899999999999999999999999999998877643

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.5e-40  Score=327.95  Aligned_cols=215  Identities=23%  Similarity=0.302  Sum_probs=183.4

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-  121 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-  121 (601)
                      +..++||++.|+..+....+++||||++.+      +|+|||  |||||     + ++|+|+.+|++|+|+++|.++.. 
T Consensus         3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGs--GKSTL-----~-r~l~Gl~~p~~G~I~~~G~~~~~~   74 (252)
T COG1124           3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGS--GKSTL-----A-RLLAGLEKPSSGSILLDGKPLAPK   74 (252)
T ss_pred             eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCC--CHHHH-----H-HHHhcccCCCCceEEECCcccCcc
Confidence            345899999998877667899999999988      999999  56554     4 59999999999999999987643 


Q ss_pred             -chHHhcccEEEEccCC--CCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCc-ccCCccccCChHHHhhhhc
Q psy7365         122 -DMTTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPH-KRTSLANTLSGGMQRKLDN  197 (601)
Q Consensus       122 -~~~~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qr~~~  197 (601)
                       .....++.|.+|||+|  ++-|..||.+-+.=++...|.++.+  +++.++++.+||.. .++++|.+|||||+||++|
T Consensus        75 ~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~--~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaI  152 (252)
T COG1124          75 KRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQ--QRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAI  152 (252)
T ss_pred             ccchhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHH--HHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHH
Confidence             2335677899999998  4899999999998888877776544  45999999999984 6899999999999999985


Q ss_pred             hhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCC
Q psy7365         198 VKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVP  277 (601)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  277 (601)
                      |||+                                      +.+                                   
T Consensus       153 ARAL--------------------------------------~~~-----------------------------------  159 (252)
T COG1124         153 ARAL--------------------------------------IPE-----------------------------------  159 (252)
T ss_pred             HHHh--------------------------------------ccC-----------------------------------
Confidence            4432                                      222                                   


Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                      |++||||||||+||+..+.++|++|.+++    +..|.|.|++|||+..+..+|||+++|++|+++..++...
T Consensus       160 PklLIlDEptSaLD~siQa~IlnlL~~l~----~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~  228 (252)
T COG1124         160 PKLLILDEPTSALDVSVQAQILNLLLELK----KERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEE  228 (252)
T ss_pred             CCEEEecCchhhhcHHHHHHHHHHHHHHH----HhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhh
Confidence            59999999999999999999999999995    3468999999999999999999999999999998775433

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=6.5e-40  Score=325.95  Aligned_cols=209  Identities=24%  Similarity=0.456  Sum_probs=178.9

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchH
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMT  124 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~  124 (601)
                      .++++++.|++.....++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.....
T Consensus         3 ~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~~~~G~i~~~g~~~~~~~~   74 (218)
T cd03266           3 TADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGA--GKTTT------LRMLAGLLEPDAGFATVDGFDVVKEPA   74 (218)
T ss_pred             EEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCC--CHHHH------HHHHhCCcCCCCceEEECCEEcccCHH
Confidence            4789999986532223699999999988      999999  57665      679999999999999999998865444


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcch
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNN  204 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~  204 (601)
                      ..++.+||+||++.+|+.+||.||+.++...++.+..+...++.++++.+|+.+..++++.+||||||||+++|||+   
T Consensus        75 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral---  151 (218)
T cd03266          75 EARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARAL---  151 (218)
T ss_pred             HHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHH---
Confidence            56778999999999999999999999877666666666677889999999999999999999999999999865432   


Q ss_pred             hhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEe
Q psy7365         205 KAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILD  284 (601)
Q Consensus       205 ~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLD  284 (601)
                                                         +.+                                   |+++|||
T Consensus       152 -----------------------------------~~~-----------------------------------p~illlD  161 (218)
T cd03266         152 -----------------------------------VHD-----------------------------------PPVLLLD  161 (218)
T ss_pred             -----------------------------------hcC-----------------------------------CCEEEEc
Confidence                                               232                                   5899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc
Q psy7365         285 EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  345 (601)
Q Consensus       285 EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~  345 (601)
                      |||+|||+.+++.+++.|+++.     .+|+|+|++||+++++..+||++++|.+|++...
T Consensus       162 EPt~~LD~~~~~~l~~~l~~~~-----~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~  217 (218)
T cd03266         162 EPTTGLDVMATRALREFIRQLR-----ALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYE  217 (218)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHH-----HCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeec
Confidence            9999999999999999999873     3589999999999999999999999999998653

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=8.5e-40  Score=329.14  Aligned_cols=208  Identities=28%  Similarity=0.419  Sum_probs=176.3

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc---
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD---  122 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~---  122 (601)
                      +++|++.|+.    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++...   
T Consensus         3 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGs--GKSTL------l~~l~G~~~p~~G~i~~~g~~~~~~~~~   70 (235)
T cd03261           3 LRGLTKSFGG----RTVLKGVDLDVRRGEILAIIGPSGS--GKSTL------LRLIVGLLRPDSGEVLIDGEDISGLSEA   70 (235)
T ss_pred             EEEEEEEECC----EEEEeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCceEEEECCEEccccChh
Confidence            6899999853    3599999999988      999999  56665      6799999999999999999987532   


Q ss_pred             -hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhc-CCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh
Q psy7365         123 -MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       123 -~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                       ....++.+||+||++.+|+.+||.||+.++.... +.++.+...++.++++.+|+.+..++++.+||||||||+++|||
T Consensus        71 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~a  150 (235)
T cd03261          71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARA  150 (235)
T ss_pred             hHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence             1345678999999999999999999999875533 35555666788899999999998999999999999999986543


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      |+                                      .+                                   |++
T Consensus       151 l~--------------------------------------~~-----------------------------------p~l  157 (235)
T cd03261         151 LA--------------------------------------LD-----------------------------------PEL  157 (235)
T ss_pred             Hh--------------------------------------cC-----------------------------------CCE
Confidence            32                                      22                                   589


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      +||||||+|||+.++..+++.|+++.    +..|+|||++||+++++..+||++++|.+|+++..++.
T Consensus       158 lllDEPt~~LD~~~~~~l~~~l~~~~----~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~  221 (235)
T cd03261         158 LLYDEPTAGLDPIASGVIDDLIRSLK----KELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTP  221 (235)
T ss_pred             EEecCCcccCCHHHHHHHHHHHHHHH----HhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCH
Confidence            99999999999999999999999873    22489999999999999999999999999999876643

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.5e-40  Score=347.39  Aligned_cols=212  Identities=26%  Similarity=0.362  Sum_probs=181.2

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc-h
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD-M  123 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~-~  123 (601)
                      .+++|++.|+..+....+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++... .
T Consensus         3 ~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGs--GKSTL------lk~L~Gl~~p~~G~I~~~g~~i~~~~~   74 (343)
T PRK11153          3 ELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGA--GKSTL------IRCINLLERPTSGRVLVDGQDLTALSE   74 (343)
T ss_pred             EEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCC--cHHHH------HHHHhCCCCCCceEEEECCEECCcCCH
Confidence            4889999986322245799999999988      999999  56655      5799999999999999999988542 1


Q ss_pred             ---HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh
Q psy7365         124 ---TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       124 ---~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                         ...++.+||+||++.+|+.+||.||+.|+....+.+..+.+.++.++++.+||.+..++++.+||||||||+++|||
T Consensus        75 ~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAra  154 (343)
T PRK11153         75 KELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARA  154 (343)
T ss_pred             HHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence               23467899999999999999999999998777777766677789999999999999999999999999999986543


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      |                                      +++                                   |++
T Consensus       155 L--------------------------------------~~~-----------------------------------p~i  161 (343)
T PRK11153        155 L--------------------------------------ASN-----------------------------------PKV  161 (343)
T ss_pred             H--------------------------------------HcC-----------------------------------CCE
Confidence            2                                      233                                   589


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                      +||||||+|||+.++..++++|+++.    +..|+|||++||+++++..+||++++|.+|+++..++
T Consensus       162 LlLDEPts~LD~~~~~~l~~~L~~l~----~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~  224 (343)
T PRK11153        162 LLCDEATSALDPATTRSILELLKDIN----RELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT  224 (343)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence            99999999999999999999999873    2348999999999999999999999999999876653

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=8.4e-40  Score=324.91  Aligned_cols=204  Identities=24%  Similarity=0.380  Sum_probs=173.3

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc--
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD--  122 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~--  122 (601)
                      .++++++.|+.  ...++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++...  
T Consensus         3 ~~~~l~~~~~~--~~~~il~~isl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~~~~G~i~~~g~~~~~~~~   72 (216)
T TIGR00960         3 RFEQVSKAYPG--GHQPALDNLNFHITKGEMVFLVGHSGA--GKSTF------LKLILGIEKPTRGKIRFNGQDLTRLRG   72 (216)
T ss_pred             EEEEEEEEecC--CCeeEEEeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCceEEEECCEehhhcCh
Confidence            47899999853  124699999999988      999999  56665      6799999999999999999987431  


Q ss_pred             --hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh
Q psy7365         123 --MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       123 --~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                        ....++.+||+||++.+|+.+||.||+.++....+.+..+..+++.++++.+|+.+..++++.+||||||||+++|||
T Consensus        73 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara  152 (216)
T TIGR00960        73 REIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARA  152 (216)
T ss_pred             hHHHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence              123567899999999999999999999988766666555566788999999999999999999999999999986543


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      |                                      +.+                                   |++
T Consensus       153 l--------------------------------------~~~-----------------------------------p~l  159 (216)
T TIGR00960       153 I--------------------------------------VHK-----------------------------------PPL  159 (216)
T ss_pred             H--------------------------------------hcC-----------------------------------CCE
Confidence            3                                      233                                   589


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcc
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL  342 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkI  342 (601)
                      +||||||+|||+.++..+++.|+++.     .+|.|||++||+++++..+||++++|.+|++
T Consensus       160 lllDEPt~~LD~~~~~~l~~~l~~~~-----~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       160 LLADEPTGNLDPELSRDIMRLFEEFN-----RRGTTVLVATHDINLVETYRHRTLTLSRGRL  216 (216)
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHHHHH-----HCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            99999999999999999999999873     3589999999999999999999999999874

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=9.6e-40  Score=325.56  Aligned_cols=208  Identities=33%  Similarity=0.528  Sum_probs=177.8

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchH
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMT  124 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~  124 (601)
                      .++|+++.|+.    .++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.....
T Consensus         2 ~~~~~~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~i~G~~~~~~G~i~~~g~~~~~~~~   69 (220)
T cd03265           2 EVENLVKKYGD----FEAVRGVSFRVRRGEIFGLLGPNGA--GKTTT------IKMLTTLLKPTSGRATVAGHDVVREPR   69 (220)
T ss_pred             EEEEEEEEECC----EEeeeceeEEECCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCceEEEECCEecCcChH
Confidence            37899999853    4599999999988      999999  56665      579999999999999999998754334


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcch
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNN  204 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~  204 (601)
                      ..++.+||+||++.+++.+||.||+.++....+.+..+...++.++++.+|+.+..++++.+||||||||+++|+||   
T Consensus        70 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al---  146 (220)
T cd03265          70 EVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSL---  146 (220)
T ss_pred             HHhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHH---
Confidence            55678999999999999999999999987666666666667889999999999889999999999999999865433   


Q ss_pred             hhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEe
Q psy7365         205 KAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILD  284 (601)
Q Consensus       205 ~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLD  284 (601)
                                                         +.+                                   |+++|||
T Consensus       147 -----------------------------------~~~-----------------------------------p~llllD  156 (220)
T cd03265         147 -----------------------------------VHR-----------------------------------PEVLFLD  156 (220)
T ss_pred             -----------------------------------hcC-----------------------------------CCEEEEc
Confidence                                               232                                   5899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         285 EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       285 EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                      |||+|||+.+++.+++.|.++.    +..|+|||++||+++++..+||++++|.+|+++..++
T Consensus       157 EPt~~LD~~~~~~l~~~l~~~~----~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~  215 (220)
T cd03265         157 EPTIGLDPQTRAHVWEYIEKLK----EEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGT  215 (220)
T ss_pred             CCccCCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCC
Confidence            9999999999999999999873    2238899999999999999999999999999876654

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=8.5e-40  Score=348.30  Aligned_cols=208  Identities=22%  Similarity=0.346  Sum_probs=179.0

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchH
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMT  124 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~  124 (601)
                      .+++|++.|+.    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|+++|+++.... 
T Consensus         4 ~i~~l~~~~~~----~~~l~~isl~i~~Ge~~~llGpsGs--GKSTL------Lr~IaGl~~p~~G~I~i~g~~i~~~~-   70 (353)
T PRK10851          4 EIANIKKSFGR----TQVLNDISLDIPSGQMVALLGPSGS--GKTTL------LRIIAGLEHQTSGHIRFHGTDVSRLH-   70 (353)
T ss_pred             EEEEEEEEeCC----eEEEEEeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCcEEEECCEECCCCC-
Confidence            48899999864    3599999999988      999999  56655      57999999999999999999885422 


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhc----CCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK----QVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                      ..++.+|||||++.+|+++||.||+.|+....    +.++.+.++++.++++.+||++..++++.+||||||||+++|||
T Consensus        71 ~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArA  150 (353)
T PRK10851         71 ARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARA  150 (353)
T ss_pred             HHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence            23568999999999999999999999987642    34556677889999999999999999999999999999986543


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      +                                      +.+                                   |++
T Consensus       151 L--------------------------------------~~~-----------------------------------P~l  157 (353)
T PRK10851        151 L--------------------------------------AVE-----------------------------------PQI  157 (353)
T ss_pred             H--------------------------------------hcC-----------------------------------CCE
Confidence            2                                      233                                   589


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      +||||||+|||+..+..+++.|+++.    +..|+|+|++|||++++..+|||+++|.+|+++..+++
T Consensus       158 lLLDEP~s~LD~~~r~~l~~~L~~l~----~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~  221 (353)
T PRK10851        158 LLLDEPFGALDAQVRKELRRWLRQLH----EELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTP  221 (353)
T ss_pred             EEEeCCCccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence            99999999999999999999999984    23489999999999999999999999999999877654

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.6e-40  Score=319.40  Aligned_cols=210  Identities=24%  Similarity=0.320  Sum_probs=181.1

Q ss_pred             chhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCC-----eeEEEEc
Q psy7365          47 AYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVS-----SGTAKIY  115 (601)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~-----~G~v~~~  115 (601)
                      .++..+++|+.-||+    ..||+|||+++++      +|||||  ||||+      .|+++.+....     +|+|.++
T Consensus         5 ~~~~~~~~l~~yYg~----~~aL~~i~l~i~~~~VTAlIGPSGc--GKST~------LR~lNRmndl~~~~r~~G~v~~~   72 (253)
T COG1117           5 IPAIEVRDLNLYYGD----KHALKDINLDIPKNKVTALIGPSGC--GKSTL------LRCLNRMNDLIPGARVEGEVLLD   72 (253)
T ss_pred             cceeEecceeEEECc----hhhhccCceeccCCceEEEECCCCc--CHHHH------HHHHHhhcccCcCceEEEEEEEC
Confidence            345568899999874    4599999999988      999999  56665      56888886553     6999999


Q ss_pred             cccCCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC----cccCCccccCC
Q psy7365         116 DHDIRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP----HKRTSLANTLS  188 (601)
Q Consensus       116 g~~~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LS  188 (601)
                      |+++..   +...+|++||+|||.|..|| +|++||++|+....|+..++..+.+++.|....|.    +.+++.+..||
T Consensus        73 g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LS  151 (253)
T COG1117          73 GKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLS  151 (253)
T ss_pred             CeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCC
Confidence            999975   46789999999999999998 99999999999999987777888899999888876    45788999999


Q ss_pred             hHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHH
Q psy7365         189 GGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVT  268 (601)
Q Consensus       189 gG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~  268 (601)
                      |||||||+||||+                                      +                            
T Consensus       152 GGQQQRLcIARal--------------------------------------A----------------------------  165 (253)
T COG1117         152 GGQQQRLCIARAL--------------------------------------A----------------------------  165 (253)
T ss_pred             hhHHHHHHHHHHH--------------------------------------h----------------------------
Confidence            9999999865432                                      1                            


Q ss_pred             HHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         269 VLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       269 ~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                             ..|++|+||||||+|||.+...+-++|.+++      +..||++|||+|.-+.+..|+++++..|+++..|.+
T Consensus       166 -------v~PeVlLmDEPtSALDPIsT~kIEeLi~eLk------~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T  232 (253)
T COG1117         166 -------VKPEVLLMDEPTSALDPISTLKIEELITELK------KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPT  232 (253)
T ss_pred             -------cCCcEEEecCcccccCchhHHHHHHHHHHHH------hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCH
Confidence                   2369999999999999999999999999984      468999999999999999999999999999988764

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-39  Score=349.48  Aligned_cols=209  Identities=26%  Similarity=0.360  Sum_probs=180.4

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM  123 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~  123 (601)
                      ..+++|++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++....
T Consensus         4 l~i~~l~~~~~~----~~vl~~vsl~i~~Ge~~~l~G~nGs--GKSTL------L~~iaGl~~p~~G~I~~~g~~i~~~~   71 (369)
T PRK11000          4 VTLRNVTKAYGD----VVISKDINLDIHEGEFVVFVGPSGC--GKSTL------LRMIAGLEDITSGDLFIGEKRMNDVP   71 (369)
T ss_pred             EEEEEEEEEeCC----eEEEeeeEEEEcCCCEEEEECCCCC--cHHHH------HHHHhCCCCCCceEEEECCEECCCCC
Confidence            458999999864    4599999999987      999999  56665      57999999999999999999885422


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcc
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFN  203 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~  203 (601)
                      . .++.+||+||++.+|+++||.||+.|+....+.+..+.++++.++++.+||.+..++++.+|||||||||++||||  
T Consensus        72 ~-~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL--  148 (369)
T PRK11000         72 P-AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTL--  148 (369)
T ss_pred             H-hHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHH--
Confidence            2 2467999999999999999999999988776777667778899999999999999999999999999999865433  


Q ss_pred             hhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEE
Q psy7365         204 NKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVIL  283 (601)
Q Consensus       204 ~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liL  283 (601)
                                                          +.+                                   |++|||
T Consensus       149 ------------------------------------~~~-----------------------------------P~lLLL  157 (369)
T PRK11000        149 ------------------------------------VAE-----------------------------------PSVFLL  157 (369)
T ss_pred             ------------------------------------hcC-----------------------------------CCEEEE
Confidence                                                232                                   589999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       284 DEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      ||||+|||+.++..+++.|+++.    +..|.|+|++|||++++..+||++++|.+|++...+++
T Consensus       158 DEPts~LD~~~~~~l~~~L~~l~----~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~  218 (369)
T PRK11000        158 DEPLSNLDAALRVQMRIEISRLH----KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKP  218 (369)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHH----HHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence            99999999999999999999873    23489999999999999999999999999999877654

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=2.1e-39  Score=321.33  Aligned_cols=204  Identities=31%  Similarity=0.433  Sum_probs=173.3

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTT  125 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~  125 (601)
                      ++++++.|++    .++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++.... .
T Consensus         3 ~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~G~~~p~~G~i~~~g~~~~~~~-~   69 (213)
T cd03259           3 LKGLSKTYGS----VRALDDLSLTVEPGEFLALLGPSGC--GKTTL------LRLIAGLERPDSGEILIDGRDVTGVP-P   69 (213)
T ss_pred             eeeeEEEeCC----eeeecceeEEEcCCcEEEEECCCCC--CHHHH------HHHHhCCCCCCCeEEEECCEEcCcCc-h
Confidence            7899999864    4599999999988      999999  56665      57999999999999999999875422 2


Q ss_pred             hcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchh
Q psy7365         126 IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNK  205 (601)
Q Consensus       126 ~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~  205 (601)
                      .++.++|+||++.+|+.+|++||+.++....+.+....+.++.++++.+|+.+..++++.+||||||||+++||+|    
T Consensus        70 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al----  145 (213)
T cd03259          70 ERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARAL----  145 (213)
T ss_pred             hhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH----
Confidence            3567999999999999999999999876655555555567788999999999989999999999999999865433    


Q ss_pred             hHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEec
Q psy7365         206 AWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDE  285 (601)
Q Consensus       206 ~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDE  285 (601)
                                                        +.+                                   |+++||||
T Consensus       146 ----------------------------------~~~-----------------------------------p~~lllDE  156 (213)
T cd03259         146 ----------------------------------ARE-----------------------------------PSLLLLDE  156 (213)
T ss_pred             ----------------------------------hcC-----------------------------------CCEEEEcC
Confidence                                              222                                   58999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc
Q psy7365         286 PTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  345 (601)
Q Consensus       286 PtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~  345 (601)
                      ||+|||+.++..+++.|+++.    +..|+|||++||+++++..+||++++|.+|++...
T Consensus       157 Pt~~LD~~~~~~l~~~l~~~~----~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~  212 (213)
T cd03259         157 PLSALDAKLREELREELKELQ----RELGITTIYVTHDQEEALALADRIAVMNEGRIVQV  212 (213)
T ss_pred             CcccCCHHHHHHHHHHHHHHH----HHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEec
Confidence            999999999999999999873    22489999999999999999999999999998654

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.3e-39  Score=334.95  Aligned_cols=214  Identities=25%  Similarity=0.371  Sum_probs=180.7

Q ss_pred             hhhcccccccccCC-CccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          50 SLFESLSENRDKLG-IDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      ..+++|++.|+... ...++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++...
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGa--GKSTL------l~~l~Gl~~p~~G~i~~~g~~~~~~   74 (287)
T PRK13637          3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGS--GKSTL------IQHLNGLLKPTSGKIIIDGVDITDK   74 (287)
T ss_pred             EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCC--cHHHH------HHHHhcCCCCCccEEEECCEECCCc
Confidence            34889999986322 235799999999988      999999  56655      5799999999999999999988542


Q ss_pred             ---hHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC--cccCCccccCChHHHhhhh
Q psy7365         123 ---MTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP--HKRTSLANTLSGGMQRKLD  196 (601)
Q Consensus       123 ---~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgG~~qr~~  196 (601)
                         ....++.+||+||+|. .++..||.||+.|+....+.++++..+++.++++.+||.  +..++++.+||||||||++
T Consensus        75 ~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~  154 (287)
T PRK13637         75 KVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVA  154 (287)
T ss_pred             CccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHH
Confidence               2356788999999984 444689999999987777788777888899999999997  6789999999999999998


Q ss_pred             chhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccC
Q psy7365         197 NVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFV  276 (601)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  276 (601)
                      |||||                                      +.+                                  
T Consensus       155 iAraL--------------------------------------~~~----------------------------------  162 (287)
T PRK13637        155 IAGVV--------------------------------------AME----------------------------------  162 (287)
T ss_pred             HHHHH--------------------------------------HcC----------------------------------
Confidence            65433                                      233                                  


Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                       |++|||||||+|||+.++..++++|+++.    +..|+|||++||+++++..+|||+++|.+|+++..+++
T Consensus       163 -P~llllDEPt~gLD~~~~~~l~~~l~~l~----~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~  229 (287)
T PRK13637        163 -PKILILDEPTAGLDPKGRDEILNKIKELH----KEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTP  229 (287)
T ss_pred             -CCEEEEECCccCCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence             58999999999999999999999999883    23489999999999999999999999999999887754

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.7e-39  Score=348.62  Aligned_cols=207  Identities=26%  Similarity=0.389  Sum_probs=175.5

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc-hH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD-MT  124 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~-~~  124 (601)
                      ++++.+.|+.    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++... ..
T Consensus        31 ~~~~~~~~~~----~~~L~~isl~i~~Gei~~LvG~NGs--GKSTL------Lr~I~Gl~~p~sG~I~i~G~~i~~~~~~   98 (400)
T PRK10070         31 KEQILEKTGL----SLGVKDASLAIEEGEIFVIMGLSGS--GKSTM------VRLLNRLIEPTRGQVLIDGVDIAKISDA   98 (400)
T ss_pred             HHHHHhhcCC----eEEEEeEEEEEcCCCEEEEECCCCc--hHHHH------HHHHHcCCCCCCCEEEECCEECCcCCHH
Confidence            5556666532    3489999999988      999999  56665      6799999999999999999998642 21


Q ss_pred             H----hcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh
Q psy7365         125 T----IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       125 ~----~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                      .    .++.+||+||++.+|+++||.||+.|+....+.+..+.++++.++++.+||.+..++++.+||||||||+++|||
T Consensus        99 ~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArA  178 (400)
T PRK10070         99 ELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARA  178 (400)
T ss_pred             HHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHH
Confidence            1    245799999999999999999999998877777766667788999999999999999999999999999986543


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      |+                                      .+                                   |++
T Consensus       179 L~--------------------------------------~~-----------------------------------P~i  185 (400)
T PRK10070        179 LA--------------------------------------IN-----------------------------------PDI  185 (400)
T ss_pred             Hh--------------------------------------cC-----------------------------------CCE
Confidence            32                                      33                                   589


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                      |||||||+|||+.++..+++.|.++.    +..|+|||++||+++++..+||++++|.+|+++..++
T Consensus       186 LLLDEPts~LD~~~r~~l~~~L~~l~----~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~  248 (400)
T PRK10070        186 LLMDEAFSALDPLIRTEMQDELVKLQ----AKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGT  248 (400)
T ss_pred             EEEECCCccCCHHHHHHHHHHHHHHH----HHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCC
Confidence            99999999999999999999999873    2358999999999999999999999999999876654

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.2e-39  Score=337.72  Aligned_cols=214  Identities=24%  Similarity=0.326  Sum_probs=180.3

Q ss_pred             hhhcccccccccCC-CccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365          50 SLFESLSENRDKLG-IDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-  121 (601)
Q Consensus        50 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-  121 (601)
                      +.++||++.|+... ....+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|+++|.++.. 
T Consensus         3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGs--GKSTL------l~~L~Gl~~p~~G~i~~~g~~~~~~   74 (305)
T PRK13651          3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGS--GKTTF------IEHLNALLLPDTGTIEWIFKDEKNK   74 (305)
T ss_pred             EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCC--cHHHH------HHHHhCCCCCCCcEEEEeceecccc
Confidence            45899999986422 234699999999988      999999  56665      579999999999999999876521 


Q ss_pred             ------------------------chHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCC
Q psy7365         122 ------------------------DMTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGI  176 (601)
Q Consensus       122 ------------------------~~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl  176 (601)
                                              .....++.+|||||+|. .++..||+||+.|+....+.++++..+++.++++.+||
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL  154 (305)
T PRK13651         75 KKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGL  154 (305)
T ss_pred             cccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCC
Confidence                                    22345778999999973 45568999999998888888888888899999999999


Q ss_pred             C-cccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHH
Q psy7365         177 P-HKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALET  255 (601)
Q Consensus       177 ~-~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  255 (601)
                      . +..++++.+||||||||+++|++|                                      +.+             
T Consensus       155 ~~~~~~~~~~~LSgGqkqrvalA~aL--------------------------------------~~~-------------  183 (305)
T PRK13651        155 DESYLQRSPFELSGGQKRRVALAGIL--------------------------------------AME-------------  183 (305)
T ss_pred             ChhhhhCChhhCCHHHHHHHHHHHHH--------------------------------------HhC-------------
Confidence            7 789999999999999999865432                                      222             


Q ss_pred             HhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEE
Q psy7365         256 LKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIA  335 (601)
Q Consensus       256 ~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~  335 (601)
                                            |++|||||||+|||+.++..++++|+++.     ..|+|||++|||++++..+|||++
T Consensus       184 ----------------------P~lLlLDEPt~~LD~~~~~~l~~~l~~l~-----~~g~tiiivtHd~~~~~~~adrv~  236 (305)
T PRK13651        184 ----------------------PDFLVFDEPTAGLDPQGVKEILEIFDNLN-----KQGKTIILVTHDLDNVLEWTKRTI  236 (305)
T ss_pred             ----------------------CCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HCCCEEEEEeeCHHHHHHhCCEEE
Confidence                                  58999999999999999999999999883     358999999999999999999999


Q ss_pred             EecCCccccccCcc
Q psy7365         336 IIAAGKLQCCGSSV  349 (601)
Q Consensus       336 vL~~GkIv~~G~~~  349 (601)
                      +|.+|+++..+++.
T Consensus       237 vl~~G~i~~~g~~~  250 (305)
T PRK13651        237 FFKDGKIIKDGDTY  250 (305)
T ss_pred             EEECCEEEEECCHH
Confidence            99999998877543

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2e-39  Score=326.00  Aligned_cols=207  Identities=24%  Similarity=0.367  Sum_probs=170.5

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      .+.++||++.|++.    ++|+|+||++.+      +||||+  |||||      .|+|.|+++|++|+|.++|.++...
T Consensus         4 ~i~v~nl~v~y~~~----~vl~~i~l~v~~G~~~~iiGPNGa--GKSTL------lK~iLGll~p~~G~i~~~g~~~~~~   71 (254)
T COG1121           4 MIEVENLTVSYGNR----PVLEDISLSVEKGEITALIGPNGA--GKSTL------LKAILGLLKPSSGEIKIFGKPVRKR   71 (254)
T ss_pred             EEEEeeeEEEECCE----eeeeccEEEEcCCcEEEEECCCCC--CHHHH------HHHHhCCCcCCcceEEEcccccccc
Confidence            45699999998743    399999999988      999999  67765      6799999999999999999987543


Q ss_pred             hHHhcccEEEEccCCC--CCCCCCHHHHHHHhHhh----cCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhh
Q psy7365         123 MTTIRRSLGVCPQYNA--LFDKLTVEEHMWFYSQL----KQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD  196 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~--~~~~~tv~e~l~~~~~~----~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~  196 (601)
                      ..  +.+||||||...  --+.+||+|-+..+...    ++...++.+++++++|+.+|+.+++++.+++|||||+||+-
T Consensus        72 ~~--~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~  149 (254)
T COG1121          72 RK--RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVL  149 (254)
T ss_pred             cc--CCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHH
Confidence            21  468999999763  23458999999987432    22233444788999999999999999999999999999996


Q ss_pred             chhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccC
Q psy7365         197 NVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFV  276 (601)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  276 (601)
                      |||||                                      +++                                  
T Consensus       150 lARAL--------------------------------------~~~----------------------------------  157 (254)
T COG1121         150 LARAL--------------------------------------AQN----------------------------------  157 (254)
T ss_pred             HHHHh--------------------------------------ccC----------------------------------
Confidence            54433                                      333                                  


Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                       |++|+|||||+|+|+.++..++++|++++     .+|+||+++|||++.+...+|+|++|.. ++.+.|++
T Consensus       158 -p~lllLDEP~~gvD~~~~~~i~~lL~~l~-----~eg~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~~G~~  222 (254)
T COG1121         158 -PDLLLLDEPFTGVDVAGQKEIYDLLKELR-----QEGKTVLMVTHDLGLVMAYFDRVICLNR-HLIASGPP  222 (254)
T ss_pred             -CCEEEecCCcccCCHHHHHHHHHHHHHHH-----HCCCEEEEEeCCcHHhHhhCCEEEEEcC-eeEeccCh
Confidence             59999999999999999999999999994     3499999999999999999999999975 44555654

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=4.2e-39  Score=320.13  Aligned_cols=205  Identities=27%  Similarity=0.383  Sum_probs=171.0

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch--
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM--  123 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~--  123 (601)
                      +++|++.|++.....++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++....  
T Consensus         3 ~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGs--GKSTL------l~~i~Gl~~~~~G~i~~~g~~~~~~~~~   74 (218)
T cd03255           3 LKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGS--GKSTL------LNILGGLDRPTSGEVRVDGTDISKLSEK   74 (218)
T ss_pred             EeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCC--CHHHH------HHHHhCCcCCCceeEEECCEehhhcchh
Confidence            789999986422124699999999988      999999  56665      67999999999999999999875321  


Q ss_pred             --H-HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh
Q psy7365         124 --T-TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       124 --~-~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                        . ..++.+||+||++.+|+.+||+||+.|+....+.+....++++.++++.+||.+..++.+.+||||||||+++|||
T Consensus        75 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a  154 (218)
T cd03255          75 ELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARA  154 (218)
T ss_pred             HHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHH
Confidence              1 1356799999999999999999999998766665555556678899999999988899999999999999986543


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      |+                                      .+                                   |++
T Consensus       155 l~--------------------------------------~~-----------------------------------p~l  161 (218)
T cd03255         155 LA--------------------------------------ND-----------------------------------PKI  161 (218)
T ss_pred             Hc--------------------------------------cC-----------------------------------CCE
Confidence            32                                      22                                   589


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcc
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL  342 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkI  342 (601)
                      +||||||+|||+.++..++++|+++.    +..|+|||++||+++++. .||++++|.+|++
T Consensus       162 llLDEP~~~LD~~~~~~l~~~l~~~~----~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i  218 (218)
T cd03255         162 ILADEPTGNLDSETGKEVMELLRELN----KEAGTTIVVVTHDPELAE-YADRIIELRDGKI  218 (218)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHHHH----HhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence            99999999999999999999999873    224899999999999987 9999999999874

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=3.3e-39  Score=312.96  Aligned_cols=203  Identities=21%  Similarity=0.273  Sum_probs=176.3

Q ss_pred             cCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccccc-------ccccccccccccC----CcccccccccCCCC
Q psy7365         312 LSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN-------SFARGYYLSLDMK----SAPQKSYIGYCPQF  380 (601)
Q Consensus       312 ~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~-------~~g~g~~igld~~----~~~~~~~ig~v~Q~  380 (601)
                      +.+..|+   .+++....-++.+++++...   +|++++++.       +.|..++.|.+..    ....|+++|+|||+
T Consensus        12 fg~~~VL---kgi~l~v~~Gevv~iiGpSG---SGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~   85 (240)
T COG1126          12 FGDKEVL---KGISLSVEKGEVVVIIGPSG---SGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQ   85 (240)
T ss_pred             eCCeEEe---cCcceeEcCCCEEEEECCCC---CCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeeccc
Confidence            4455666   88999999999999998632   566666542       2334434442221    23357899999999


Q ss_pred             cccCCCCCHHHHHHHhH-HhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCC
Q psy7365         381 DALNDRLTPREHLEFYS-RVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTS  459 (601)
Q Consensus       381 ~~l~~~lTv~E~L~~~~-~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTs  459 (601)
                      .+|||++||.||+.+.. ..++.++.++++.+.++|+++||.+..+.+|.+|||||||||+|||||+.+|+++++|||||
T Consensus        86 fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTS  165 (240)
T COG1126          86 FNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTS  165 (240)
T ss_pred             ccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcc
Confidence            99999999999998854 46788999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         460 GMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       460 GLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      +|||+...++.+.+++++++|.|.+++||+|.++.++||||++|++|+++.+|+|+++...
T Consensus       166 ALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~  226 (240)
T COG1126         166 ALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN  226 (240)
T ss_pred             cCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999998654

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=5.9e-39  Score=317.74  Aligned_cols=204  Identities=30%  Similarity=0.503  Sum_probs=174.6

Q ss_pred             hhcccccccccCCCccceeecceEEeec-----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHH
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP-----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTT  125 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~  125 (601)
                      .++++++.|++    .++++|+||++.+     +|||||  |||||      .++|+|+++|++|+|.++|.++......
T Consensus         2 ~~~~~~~~~~~----~~~l~~vs~~i~~g~~~i~G~nGs--GKSTL------l~~l~Gl~~~~~G~i~~~g~~~~~~~~~   69 (211)
T cd03264           2 QLENLTKRYGK----KRALDGVSLTLGPGMYGLLGPNGA--GKTTL------MRILATLTPPSSGTIRIDGQDVLKQPQK   69 (211)
T ss_pred             EEEEEEEEECC----EEEEcceeEEEcCCcEEEECCCCC--CHHHH------HHHHhCCCCCCccEEEECCCccccchHH
Confidence            37889999854    3599999999987     999999  56665      6799999999999999999987543345


Q ss_pred             hcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchh
Q psy7365         126 IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNK  205 (601)
Q Consensus       126 ~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~  205 (601)
                      .++.++|+||++.+|+.+||.||+.+.....+.+..+...++.++++.+|+.+..++++.+||||||||+++||||    
T Consensus        70 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al----  145 (211)
T cd03264          70 LRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQAL----  145 (211)
T ss_pred             HHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHH----
Confidence            5778999999999999999999999877666665555667788999999999888999999999999999865432    


Q ss_pred             hHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEec
Q psy7365         206 AWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDE  285 (601)
Q Consensus       206 ~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDE  285 (601)
                                                        +.+                                   |+++||||
T Consensus       146 ----------------------------------~~~-----------------------------------p~llllDE  156 (211)
T cd03264         146 ----------------------------------VGD-----------------------------------PSILIVDE  156 (211)
T ss_pred             ----------------------------------hcC-----------------------------------CCEEEEcC
Confidence                                              232                                   58999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc
Q psy7365         286 PTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  345 (601)
Q Consensus       286 PtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~  345 (601)
                      ||+|||+.+++.+++.|+++.     . +.|+|++||+++++..+|||+++|.+|+++..
T Consensus       157 Pt~~LD~~~~~~l~~~l~~~~-----~-~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~  210 (211)
T cd03264         157 PTAGLDPEERIRFRNLLSELG-----E-DRIVILSTHIVEDVESLCNQVAVLNKGKLVFE  210 (211)
T ss_pred             CcccCCHHHHHHHHHHHHHHh-----C-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEec
Confidence            999999999999999999872     2 58999999999999999999999999998654

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=8.9e-39  Score=318.62  Aligned_cols=206  Identities=27%  Similarity=0.407  Sum_probs=174.6

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTT  125 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~  125 (601)
                      +++|++.|++.....++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++..    
T Consensus         3 ~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGs--GKSTL------l~~l~Gl~~~~~G~i~~~g~~~~~----   70 (220)
T cd03293           3 VRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGC--GKSTL------LRIIAGLERPTSGEVLVDGEPVTG----   70 (220)
T ss_pred             EEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCC--CHHHH------HHHHhCCCCCCceEEEECCEECcc----
Confidence            689999986422225699999999988      999999  56665      579999999999999999998742    


Q ss_pred             hcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchh
Q psy7365         126 IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNK  205 (601)
Q Consensus       126 ~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~  205 (601)
                      .++.+||+||++.+|+.+|+.||+.++....+.+......++.++++.+|+.+..++++.+||||||||+++||||    
T Consensus        71 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al----  146 (220)
T cd03293          71 PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARAL----  146 (220)
T ss_pred             ccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHH----
Confidence            3567999999999999999999999877666665555567788999999999989999999999999999865432    


Q ss_pred             hHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEec
Q psy7365         206 AWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDE  285 (601)
Q Consensus       206 ~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDE  285 (601)
                                                        +.+                                   |+++||||
T Consensus       147 ----------------------------------~~~-----------------------------------p~lllLDE  157 (220)
T cd03293         147 ----------------------------------AVD-----------------------------------PDVLLLDE  157 (220)
T ss_pred             ----------------------------------HcC-----------------------------------CCEEEECC
Confidence                                              233                                   58999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEec--CCcccccc
Q psy7365         286 PTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA--AGKLQCCG  346 (601)
Q Consensus       286 PtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~--~GkIv~~G  346 (601)
                      ||+|||+.++..++++|+++.    +..|+|||++||+++++..+||++++|.  +|+++..+
T Consensus       158 Pt~~LD~~~~~~~~~~l~~~~----~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~  216 (220)
T cd03293         158 PFSALDALTREQLQEELLDIW----RETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEV  216 (220)
T ss_pred             CCCCCCHHHHHHHHHHHHHHH----HHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEE
Confidence            999999999999999999873    2348999999999999999999999999  79887654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.4e-39  Score=332.48  Aligned_cols=213  Identities=27%  Similarity=0.431  Sum_probs=179.5

Q ss_pred             hhhcccccccccCC-CccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365          50 SLFESLSENRDKLG-IDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-  121 (601)
Q Consensus        50 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-  121 (601)
                      +.++++++.|++.. ....+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|+++|.++.. 
T Consensus         2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~i~~~   73 (288)
T PRK13643          2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGS--GKSTL------LQHLNGLLQPTEGKVTVGDIVVSST   73 (288)
T ss_pred             EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCC--hHHHH------HHHHhcCCCCCCcEEEECCEECccc
Confidence            34899999986322 124699999999988      999999  56665      579999999999999999998742 


Q ss_pred             ----chHHhcccEEEEccCC--CCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC-cccCCccccCChHHHhh
Q psy7365         122 ----DMTTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP-HKRTSLANTLSGGMQRK  194 (601)
Q Consensus       122 ----~~~~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qr  194 (601)
                          .....++.+|||||+|  .+| ..||.||+.|+...++.++.+.+.++.++++.+||. +..++.+.+||||||||
T Consensus        74 ~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqr  152 (288)
T PRK13643         74 SKQKEIKPVRKKVGVVFQFPESQLF-EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRR  152 (288)
T ss_pred             cccccHHHHHhhEEEEecCcchhcc-cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHH
Confidence                2345677899999998  355 469999999988887887777788899999999996 57899999999999999


Q ss_pred             hhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhc
Q psy7365         195 LDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMS  274 (601)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  274 (601)
                      +++|++|                                      +.+                                
T Consensus       153 vaiA~aL--------------------------------------~~~--------------------------------  162 (288)
T PRK13643        153 VAIAGIL--------------------------------------AME--------------------------------  162 (288)
T ss_pred             HHHHHHH--------------------------------------HhC--------------------------------
Confidence            9865432                                      222                                


Q ss_pred             cCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         275 FVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       275 ~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                         |+++||||||+|||+.++..++++|.+++     .+|.|||++|||++++..+|||+++|.+|+++..|++.
T Consensus       163 ---p~illLDEPt~gLD~~~~~~l~~~l~~l~-----~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~  229 (288)
T PRK13643        163 ---PEVLVLDEPTAGLDPKARIEMMQLFESIH-----QSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPS  229 (288)
T ss_pred             ---CCEEEEECCccCCCHHHHHHHHHHHHHHH-----HCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence               58999999999999999999999999883     35899999999999999999999999999998877543

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-38  Score=320.01  Aligned_cols=212  Identities=21%  Similarity=0.312  Sum_probs=174.9

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      +..+++|++.|+......++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|+++|.++...
T Consensus         5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGs--GKSTL------l~~l~Gl~~~~~G~i~~~g~~i~~~   76 (233)
T PRK11629          5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGS--GKSTL------LHLLGGLDTPTSGDVIFNGQPMSKL   76 (233)
T ss_pred             eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCC--CHHHH------HHHHhcCCCCCceEEEECCEEcCcC
Confidence            455899999986422225699999999988      999999  56665      5799999999999999999988542


Q ss_pred             -hH---Hh-cccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhc
Q psy7365         123 -MT---TI-RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDN  197 (601)
Q Consensus       123 -~~---~~-~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~  197 (601)
                       ..   .. ++.+||+||++.+|+.+|++||+.|.....+.+..+.++++.++++.+|+.+..++.+.+||||||||+++
T Consensus        77 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~l  156 (233)
T PRK11629         77 SSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAI  156 (233)
T ss_pred             CHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence             11   12 36799999999999999999999987655555555666788999999999998999999999999999975


Q ss_pred             hhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCC
Q psy7365         198 VKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVP  277 (601)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  277 (601)
                      ||++                                      +.+                                   
T Consensus       157 a~al--------------------------------------~~~-----------------------------------  163 (233)
T PRK11629        157 ARAL--------------------------------------VNN-----------------------------------  163 (233)
T ss_pred             HHHH--------------------------------------hcC-----------------------------------
Confidence            4432                                      233                                   


Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccccc
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  346 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G  346 (601)
                      |+++||||||+|||+.++..++++|+++.    +..|+|||++||+++++... |++++|.+|+++..+
T Consensus       164 p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~~~  227 (233)
T PRK11629        164 PRLVLADEPTGNLDARNADSIFQLLGELN----RLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTAEL  227 (233)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHH----HhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEEEe
Confidence            58999999999999999999999999873    23589999999999998875 699999999987654

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=9.1e-39  Score=316.64  Aligned_cols=205  Identities=27%  Similarity=0.360  Sum_probs=174.3

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchH
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMT  124 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~  124 (601)
                      .++++++.|++    .++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++.... 
T Consensus         2 ~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~nGs--GKSTL------l~~l~G~~~~~~G~v~~~g~~~~~~~-   68 (213)
T cd03301           2 ELENVTKRFGN----VTALDDLNLDIADGEFVVLLGPSGC--GKTTT------LRMIAGLEEPTSGRIYIGGRDVTDLP-   68 (213)
T ss_pred             EEEeeEEEECC----eeeeeceEEEEcCCcEEEEECCCCC--CHHHH------HHHHhCCCCCCceEEEECCEECCcCC-
Confidence            37899999864    3599999999988      999999  56665      57999999999999999999875321 


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcch
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNN  204 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~  204 (601)
                      ..++.++|+||++.+|+..|+.||+.++....+...++.++++.++++.+|+.+..++++.+||||||||+++||+|   
T Consensus        69 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral---  145 (213)
T cd03301          69 PKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAI---  145 (213)
T ss_pred             cccceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHH---
Confidence            12457999999999999999999999876666666666677889999999999999999999999999999765432   


Q ss_pred             hhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEe
Q psy7365         205 KAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILD  284 (601)
Q Consensus       205 ~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLD  284 (601)
                                                         +.+                                   |+++|||
T Consensus       146 -----------------------------------~~~-----------------------------------p~llllD  155 (213)
T cd03301         146 -----------------------------------VRE-----------------------------------PKVFLMD  155 (213)
T ss_pred             -----------------------------------hcC-----------------------------------CCEEEEc
Confidence                                               222                                   5899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc
Q psy7365         285 EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  345 (601)
Q Consensus       285 EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~  345 (601)
                      |||+|||+.+++.+++.|+++.    +..|+|||++||+++++..+||++++|.+|+++..
T Consensus       156 EPt~~LD~~~~~~l~~~l~~~~----~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~  212 (213)
T cd03301         156 EPLSNLDAKLRVQMRAELKRLQ----QRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQI  212 (213)
T ss_pred             CCcccCCHHHHHHHHHHHHHHH----HHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence            9999999999999999999873    22489999999999999999999999999998754

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=1.2e-38  Score=317.36  Aligned_cols=208  Identities=48%  Similarity=0.734  Sum_probs=177.6

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTT  125 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~  125 (601)
                      +++|++.|++.  ..++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++......
T Consensus         3 ~~~l~~~~~~~--~~~il~~is~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~~~~G~i~~~g~~~~~~~~~   72 (220)
T cd03263           3 IRNLTKTYKKG--TKPAVDDLSLNVYKGEIFGLLGHNGA--GKTTT------LKMLTGELRPTSGTAYINGYSIRTDRKA   72 (220)
T ss_pred             EEeeEEEeCCC--CceeecceEEEEcCCcEEEEECCCCC--CHHHH------HHHHhCCCCCCCcEEEECCEecccchHH
Confidence            68999998531  25699999999988      999999  56665      6799999999999999999988544445


Q ss_pred             hcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchh
Q psy7365         126 IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNK  205 (601)
Q Consensus       126 ~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~  205 (601)
                      .++.+||+||++.+|+.+|+.||+.++....+.+..+...++.++++.+||.+..++++.+||||||||+++||+|+   
T Consensus        73 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~---  149 (220)
T cd03263          73 ARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALI---  149 (220)
T ss_pred             HhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHh---
Confidence            56789999999999999999999998877667666556677899999999998889999999999999997544322   


Q ss_pred             hHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEec
Q psy7365         206 AWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDE  285 (601)
Q Consensus       206 ~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDE  285 (601)
                                                         .                                   +|+++||||
T Consensus       150 -----------------------------------~-----------------------------------~p~llllDE  159 (220)
T cd03263         150 -----------------------------------G-----------------------------------GPSVLLLDE  159 (220)
T ss_pred             -----------------------------------c-----------------------------------CCCEEEECC
Confidence                                               2                                   258999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         286 PTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       286 PtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      ||+|||+.+++.+++.|+++.      ++.|+|++||+++++..+||++++|.+|+++..+++
T Consensus       160 P~~~LD~~~~~~l~~~l~~~~------~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~  216 (220)
T cd03263         160 PTSGLDPASRRAIWDLILEVR------KGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSP  216 (220)
T ss_pred             CCCCCCHHHHHHHHHHHHHHh------cCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCH
Confidence            999999999999999999872      258999999999999999999999999998876543

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-38  Score=331.49  Aligned_cols=214  Identities=26%  Similarity=0.403  Sum_probs=179.2

Q ss_pred             hhhcccccccccCC-CccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365          50 SLFESLSENRDKLG-IDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-  121 (601)
Q Consensus        50 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-  121 (601)
                      ..+++|++.|+... .+..+|+|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|+++.. 
T Consensus         3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~i~~~   74 (290)
T PRK13634          3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGS--GKSTL------LQHLNGLLQPTSGTVTIGERVITAG   74 (290)
T ss_pred             EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCC--cHHHH------HHHHhcCCCCCCcEEEECCEECccc
Confidence            34899999986422 135699999999988      999999  56655      579999999999999999998842 


Q ss_pred             ----chHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC-cccCCccccCChHHHhhh
Q psy7365         122 ----DMTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP-HKRTSLANTLSGGMQRKL  195 (601)
Q Consensus       122 ----~~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qr~  195 (601)
                          .....++.+|||||+|. .++..||.||+.|+....+.++++.+++++++++.+||. +..++++.+||||||||+
T Consensus        75 ~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv  154 (290)
T PRK13634         75 KKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRV  154 (290)
T ss_pred             cccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHH
Confidence                23456678999999983 333679999999988777777777778899999999997 678999999999999999


Q ss_pred             hchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhcc
Q psy7365         196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSF  275 (601)
Q Consensus       196 ~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  275 (601)
                      +|||+|                                      +.+                                 
T Consensus       155 ~lAraL--------------------------------------~~~---------------------------------  163 (290)
T PRK13634        155 AIAGVL--------------------------------------AME---------------------------------  163 (290)
T ss_pred             HHHHHH--------------------------------------HcC---------------------------------
Confidence            865432                                      232                                 


Q ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       276 ~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                        |+++||||||+|||+.++..++++|+++.    +..|.|||++||+++++..+|||+++|.+|+++..+++
T Consensus       164 --P~llllDEPt~~LD~~~~~~l~~~L~~l~----~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~  230 (290)
T PRK13634        164 --PEVLVLDEPTAGLDPKGRKEMMEMFYKLH----KEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTP  230 (290)
T ss_pred             --CCEEEEECCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence              58999999999999999999999999873    23489999999999999999999999999999887754

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-38  Score=328.91  Aligned_cols=211  Identities=22%  Similarity=0.302  Sum_probs=179.2

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-  121 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-  121 (601)
                      +..+++|++.|+.   ..++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. 
T Consensus         4 ~l~~~~l~~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~~~~~   72 (274)
T PRK13647          4 IIEVEDLHFRYKD---GTKALKGLSLSIPEGSKTALLGPNGA--GKSTL------LLHLNGIYLPQRGRVKVMGREVNAE   72 (274)
T ss_pred             eEEEEEEEEEeCC---CCeeeeeEEEEEcCCCEEEEECCCCC--cHHHH------HHHHhcCCCCCceEEEECCEECCCC
Confidence            3458999999842   24599999999988      999999  56665      579999999999999999998854 


Q ss_pred             chHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh
Q psy7365         122 DMTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       122 ~~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                      ....+++.+||+||+|. .++..||.||+.|+....+.++.+.++++.++++.+||.+..++++.+||||||||+++|||
T Consensus        73 ~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~lara  152 (274)
T PRK13647         73 NEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGV  152 (274)
T ss_pred             CHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHH
Confidence            23445678999999984 55678999999988766667766677788999999999999999999999999999986543


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      |                                      +.+                                   |++
T Consensus       153 L--------------------------------------~~~-----------------------------------p~l  159 (274)
T PRK13647        153 L--------------------------------------AMD-----------------------------------PDV  159 (274)
T ss_pred             H--------------------------------------HcC-----------------------------------CCE
Confidence            2                                      233                                   589


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      +||||||+|||+.++..++++|++++     .+|+|||++||+++++.++|||+++|.+|+++..+.+
T Consensus       160 lllDEPt~~LD~~~~~~l~~~l~~~~-----~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~  222 (274)
T PRK13647        160 IVLDEPMAYLDPRGQETLMEILDRLH-----NQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK  222 (274)
T ss_pred             EEEECCCcCCCHHHHHHHHHHHHHHH-----HCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence            99999999999999999999999873     2489999999999999999999999999999877654

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=1.4e-38  Score=315.59  Aligned_cols=202  Identities=28%  Similarity=0.431  Sum_probs=171.4

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc--
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD--  122 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~--  122 (601)
                      .++++++.|+.   +.++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++...  
T Consensus         3 ~~~~l~~~~~~---~~~il~~is~~i~~G~~~~l~G~nGs--GKSTL------l~~i~Gl~~~~~G~i~~~g~~~~~~~~   71 (214)
T TIGR02673         3 EFHNVSKAYPG---GVAALHDVSLHIRKGEFLFLTGPSGA--GKTTL------LKLLYGALTPSRGQVRIAGEDVNRLRG   71 (214)
T ss_pred             EEEeeeEEeCC---CceeecceeEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCceEEECCEEcccCCH
Confidence            47899999841   24699999999988      999999  56655      5799999999999999999988532  


Q ss_pred             --hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh
Q psy7365         123 --MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       123 --~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                        ....++.+||+||++.+|+.+|+.||+.++....+.+....+.++.++++.+|+.+..++.+.+||||||||+++||+
T Consensus        72 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a  151 (214)
T TIGR02673        72 RQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARA  151 (214)
T ss_pred             HHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence              123567899999999999999999999987665565555556788999999999988899999999999999986543


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      |                                      +.+                                   |++
T Consensus       152 l--------------------------------------~~~-----------------------------------p~l  158 (214)
T TIGR02673       152 I--------------------------------------VNS-----------------------------------PPL  158 (214)
T ss_pred             H--------------------------------------hCC-----------------------------------CCE
Confidence            2                                      222                                   589


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCc
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK  341 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~Gk  341 (601)
                      +||||||+|||+.++..+++.|+++.     .+|+|+|++||+++++..+||++++|.+|+
T Consensus       159 llLDEPt~~LD~~~~~~l~~~l~~~~-----~~~~tii~~tH~~~~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       159 LLADEPTGNLDPDLSERILDLLKRLN-----KRGTTVIVATHDLSLVDRVAHRVIILDDGR  214 (214)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHH-----HcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence            99999999999999999999999873     358999999999999999999999999885

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=1.4e-38  Score=336.25  Aligned_cols=216  Identities=17%  Similarity=0.242  Sum_probs=181.4

Q ss_pred             hhhhhcccccccccCC---------CccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEE
Q psy7365          48 YVSLFESLSENRDKLG---------IDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTA  112 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v  112 (601)
                      ++..++||++.|+..+         ....+++|+||++.+      +|+|||  |||||      .++|+|+++|++|+|
T Consensus         7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGs--GKSTL------lk~i~Gl~~p~~G~I   78 (331)
T PRK15079          7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGC--GKSTF------ARAIIGLVKATDGEV   78 (331)
T ss_pred             ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCC--CHHHH------HHHHHCCCCCCCcEE
Confidence            3566999999996422         236799999999988      999999  56655      569999999999999


Q ss_pred             EEccccCCCc----hHHhcccEEEEccCC--CCCCCCCHHHHHHHhHhhc--CCChHHHHHHHHHHHHHcCCC-cccCCc
Q psy7365         113 KIYDHDIRTD----MTTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLK--QVPKDLAQLEISNMIGDLGIP-HKRTSL  183 (601)
Q Consensus       113 ~~~g~~~~~~----~~~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gl~-~~~~~~  183 (601)
                      .++|.++...    ...+++.++||||+|  .+++.+||.||+.+....+  ++++++.++++.++++.+||. +..+++
T Consensus        79 ~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~  158 (331)
T PRK15079         79 AWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRY  158 (331)
T ss_pred             EECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCC
Confidence            9999998542    223567899999998  5888999999999876554  366677778889999999995 568999


Q ss_pred             cccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchh
Q psy7365         184 ANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSI  263 (601)
Q Consensus       184 ~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  263 (601)
                      +.+||||||||++||+||                                      +.+                     
T Consensus       159 p~~LSgG~~QRv~iArAL--------------------------------------~~~---------------------  179 (331)
T PRK15079        159 PHEFSGGQCQRIGIARAL--------------------------------------ILE---------------------  179 (331)
T ss_pred             cccCCHHHHHHHHHHHHH--------------------------------------hcC---------------------
Confidence            999999999999754432                                      233                     


Q ss_pred             HHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccc
Q psy7365         264 LVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQ  343 (601)
Q Consensus       264 ~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv  343 (601)
                                    |++||+||||++||+.++..++++|++++    +..|.|+|++|||++++..+|||+++|.+|+++
T Consensus       180 --------------P~llilDEPts~LD~~~~~~i~~lL~~l~----~~~~~til~iTHdl~~~~~~~dri~vl~~G~iv  241 (331)
T PRK15079        180 --------------PKLIICDEPVSALDVSIQAQVVNLLQQLQ----REMGLSLIFIAHDLAVVKHISDRVLVMYLGHAV  241 (331)
T ss_pred             --------------CCEEEEeCCCccCCHHHHHHHHHHHHHHH----HHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence                          58999999999999999999999999984    234899999999999999999999999999999


Q ss_pred             cccCc
Q psy7365         344 CCGSS  348 (601)
Q Consensus       344 ~~G~~  348 (601)
                      ..++.
T Consensus       242 e~g~~  246 (331)
T PRK15079        242 ELGTY  246 (331)
T ss_pred             EEcCH
Confidence            87764

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=1.6e-38  Score=319.37  Aligned_cols=212  Identities=25%  Similarity=0.348  Sum_probs=177.6

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc-h
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD-M  123 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~-~  123 (601)
                      .+++|++.|++.....++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++... .
T Consensus         3 ~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~g~~~~~~~~   74 (233)
T cd03258           3 ELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGA--GKSTL------IRCINGLERPTSGSVLVDGTDLTLLSG   74 (233)
T ss_pred             EEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCceEEECCEEcccCCH
Confidence            4789999986432123699999999988      999999  56665      5799999999999999999987542 1


Q ss_pred             ---HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh
Q psy7365         124 ---TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       124 ---~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                         ...++.+||+||++.+|+.+|+.||+.+.....+.+......++.++++.+|+.+..++++.+||||||||+++|++
T Consensus        75 ~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a  154 (233)
T cd03258          75 KELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARA  154 (233)
T ss_pred             HHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHH
Confidence               23467899999999999999999999987665565555556678899999999999999999999999999975443


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      |                                      +.                                   +|++
T Consensus       155 l--------------------------------------~~-----------------------------------~p~l  161 (233)
T cd03258         155 L--------------------------------------AN-----------------------------------NPKV  161 (233)
T ss_pred             H--------------------------------------hc-----------------------------------CCCE
Confidence            2                                      22                                   2589


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                      +||||||+|||+.++..+++.|+++.    +..|+|||++||+++++..+||++++|.+|+++..+.
T Consensus       162 llLDEP~~~LD~~~~~~l~~~l~~~~----~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~  224 (233)
T cd03258         162 LLCDEATSALDPETTQSILALLRDIN----RELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGT  224 (233)
T ss_pred             EEecCCCCcCCHHHHHHHHHHHHHHH----HHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecC
Confidence            99999999999999999999999873    2248999999999999999999999999999987664

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=1.8e-38  Score=319.29  Aligned_cols=207  Identities=27%  Similarity=0.403  Sum_probs=173.3

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc-hH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD-MT  124 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~-~~  124 (601)
                      +++|++.|++    .++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++... ..
T Consensus         3 ~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGs--GKSTL------l~~l~Gl~~~~~G~i~~~g~~~~~~~~~   70 (236)
T cd03219           3 VRGLTKRFGG----LVALDDVSFSVRPGEIHGLIGPNGA--GKTTL------FNLISGFLRPTSGSVLFDGEDITGLPPH   70 (236)
T ss_pred             eeeeEEEECC----EEEecCceEEecCCcEEEEECCCCC--CHHHH------HHHHcCCCCCCCceEEECCEECCCCCHH
Confidence            6889999853    4599999999988      999999  56665      5799999999999999999987542 22


Q ss_pred             H-hcccEEEEccCCCCCCCCCHHHHHHHhHhhcCC----------ChHHHHHHHHHHHHHcCCCcccCCccccCChHHHh
Q psy7365         125 T-IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV----------PKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQR  193 (601)
Q Consensus       125 ~-~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~----------~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~q  193 (601)
                      . .+..+||+||++.+|+.+||.||+.++....+.          +..+...++.++++.+|+.+..++++.+|||||||
T Consensus        71 ~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q  150 (236)
T cd03219          71 EIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQR  150 (236)
T ss_pred             HHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHH
Confidence            2 346799999999999999999999987654322          23445567889999999999899999999999999


Q ss_pred             hhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhh
Q psy7365         194 KLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAM  273 (601)
Q Consensus       194 r~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  273 (601)
                      |+++||||                                      +.+                               
T Consensus       151 rv~la~al--------------------------------------~~~-------------------------------  161 (236)
T cd03219         151 RLEIARAL--------------------------------------ATD-------------------------------  161 (236)
T ss_pred             HHHHHHHH--------------------------------------hcC-------------------------------
Confidence            99754432                                      222                               


Q ss_pred             ccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         274 SFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       274 ~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                          |+++||||||+|||+.++..+++.|+++.     ..|+|+|++||+++++..+||++++|.+|++...+++
T Consensus       162 ----p~llllDEPt~~LD~~~~~~l~~~l~~~~-----~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~  227 (236)
T cd03219         162 ----PKLLLLDEPAAGLNPEETEELAELIRELR-----ERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTP  227 (236)
T ss_pred             ----CCEEEEcCCcccCCHHHHHHHHHHHHHHH-----HCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCH
Confidence                58999999999999999999999999873     2589999999999999999999999999998776543

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=7.7e-39  Score=343.01  Aligned_cols=231  Identities=26%  Similarity=0.409  Sum_probs=187.2

Q ss_pred             cccccccCCeeeeecCCCCCCccchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhH
Q psy7365          24 ANIHKISGSEVTYVLPQDPASMGAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVS   97 (601)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~   97 (601)
                      .|+-|++|......++...+..+     =.++.+.|+.    ..+++|+||++.+      +|||||  |||||      
T Consensus         4 ~~~~k~fg~~~~~~~~~~~~g~~-----~~~~~~~~g~----~~~l~~vsf~i~~Gei~~I~G~nGs--GKSTL------   66 (382)
T TIGR03415         4 KNVDVVFGDQPAEALALLDQGKT-----REEILDETGL----VVGVANASLDIEEGEICVLMGLSGS--GKSSL------   66 (382)
T ss_pred             EeeEEeeCCCHHHHHHHHHcCCC-----HHHHHHhhCC----EEEEEeeEEEEcCCCEEEEECCCCC--cHHHH------
Confidence            46778888765555443322222     1234466554    4489999999988      999999  56655      


Q ss_pred             HHhccCCCCCCeeEEEEccc----cCCC-ch---HHh-cccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHH
Q psy7365          98 RSMLMGMLPVSSGTAKIYDH----DIRT-DM---TTI-RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEIS  168 (601)
Q Consensus        98 ~~~l~Gl~~~~~G~v~~~g~----~~~~-~~---~~~-~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~  168 (601)
                      .++|+|+++|++|+|+++|.    ++.. +.   ... ++.+||+||++.+|+++||.||+.|+....++++.+.+.++.
T Consensus        67 lr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~  146 (382)
T TIGR03415        67 LRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVD  146 (382)
T ss_pred             HHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            57999999999999999996    4432 11   122 358999999999999999999999998777777777778899


Q ss_pred             HHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhh
Q psy7365         169 NMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTH  248 (601)
Q Consensus       169 ~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~  248 (601)
                      ++++.+||.+..++++.+||||||||+++||+|+                                      ++      
T Consensus       147 e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa--------------------------------------~~------  182 (382)
T TIGR03415       147 EQLELVGLAQWADKKPGELSGGMQQRVGLARAFA--------------------------------------MD------  182 (382)
T ss_pred             HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh--------------------------------------cC------
Confidence            9999999999999999999999999998654332                                      32      


Q ss_pred             HHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHH
Q psy7365         249 KQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEAD  328 (601)
Q Consensus       249 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~  328 (601)
                                                   |++|||||||++|||.++..+++.|.++.    +..|+|+|++|||++++.
T Consensus       183 -----------------------------P~ILLlDEPts~LD~~~r~~l~~~L~~l~----~~~~~TII~iTHdl~e~~  229 (382)
T TIGR03415       183 -----------------------------ADILLMDEPFSALDPLIRTQLQDELLELQ----AKLNKTIIFVSHDLDEAL  229 (382)
T ss_pred             -----------------------------CCEEEEECCCccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHH
Confidence                                         58999999999999999999999999884    234899999999999999


Q ss_pred             hcCCEEEEecCCccccccCc
Q psy7365         329 LLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       329 ~l~Drv~vL~~GkIv~~G~~  348 (601)
                      ++|||+++|.+|+++..|++
T Consensus       230 ~l~DrI~vl~~G~iv~~g~~  249 (382)
T TIGR03415       230 KIGNRIAIMEGGRIIQHGTP  249 (382)
T ss_pred             HhCCEEEEEECCEEEEecCH
Confidence            99999999999999877654

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=100.00  E-value=2.8e-37  Score=360.59  Aligned_cols=296  Identities=23%  Similarity=0.338  Sum_probs=222.7

Q ss_pred             CCCCCCHHHHHHHhHhhcCCChH----------HHHHHHHHHHHHcCCCcc-cCCccccCChHHHhhhhchhhhcchhhH
Q psy7365         139 LFDKLTVEEHMWFYSQLKQVPKD----------LAQLEISNMIGDLGIPHK-RTSLANTLSGGMQRKLDNVKVWFNNKAW  207 (601)
Q Consensus       139 ~~~~~tv~e~l~~~~~~~~~~~~----------~~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~~qr~~~~~~~~~~~~~  207 (601)
                      .+..++|.|.+.| .+..+.++.          ++..+++ +++.+||.+. .++++.+|||||+|||.||++|.     
T Consensus       433 ~~~~~~v~~~~~~-~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~-----  505 (943)
T PRK00349        433 EVSELSIGEALEF-FENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIG-----  505 (943)
T ss_pred             HHhcCcHHHHHHH-HHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHh-----
Confidence            4568999999999 455555542          3445554 7999999876 89999999999999998654322     


Q ss_pred             HHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCC
Q psy7365         208 IAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPT  287 (601)
Q Consensus       208 ~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPt  287 (601)
                                                       .+|                                 .|+++||||||
T Consensus       506 ---------------------------------~~~---------------------------------~~~llILDEPt  519 (943)
T PRK00349        506 ---------------------------------SGL---------------------------------TGVLYVLDEPS  519 (943)
T ss_pred             ---------------------------------hCC---------------------------------CCcEEEecCCc
Confidence                                             111                                 14899999999


Q ss_pred             CCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEe------cCCccccccCcccc----------
Q psy7365         288 SGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVFL----------  351 (601)
Q Consensus       288 sgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL------~~GkIv~~G~~~lL----------  351 (601)
                      +||||..+..++++|+++.     ..|.|||++||+++++. .||++++|      .+|+++..|++..+          
T Consensus       520 agLd~~~~~~L~~~L~~L~-----~~G~TVIvVeH~~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~~~~l~~~  593 (943)
T PRK00349        520 IGLHQRDNDRLIETLKHLR-----DLGNTLIVVEHDEDTIR-AADYIVDIGPGAGVHGGEVVASGTPEEIMKNPNSLTGQ  593 (943)
T ss_pred             cCCCHHHHHHHHHHHHHHH-----hCCCEEEEEeCCHHHHH-hCCEEEEeccccCCCCCEEeeccCHHHHhcChhheeeh
Confidence            9999999999999999983     45999999999999976 69999999      67787654321000          


Q ss_pred             --------------cc-c--c------------------------------cccc------c------------------
Q psy7365         352 --------------KN-S--F------------------------------ARGY------Y------------------  360 (601)
Q Consensus       352 --------------k~-~--~------------------------------g~g~------~------------------  360 (601)
                                    .. .  .                              |.|.      .                  
T Consensus       594 ~l~~~~~~~~~~~~~~~~~~~L~v~~l~~~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~  673 (943)
T PRK00349        594 YLSGKKKIEVPKERRKGNGKFLKLKGARENNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETLYKALARKLNGAKKVPGK  673 (943)
T ss_pred             hhcccccccccccccCCCcceEEecCCccCCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHhcccccCCCC
Confidence                          00 0  0                              0000      0                  


Q ss_pred             ----ccccc----------------CC------------------cccccccccCCCCcccC------------------
Q psy7365         361 ----LSLDM----------------KS------------------APQKSYIGYCPQFDALN------------------  384 (601)
Q Consensus       361 ----igld~----------------~~------------------~~~~~~ig~v~Q~~~l~------------------  384 (601)
                          .+.+.                ++                  .+..+..||.++..++.                  
T Consensus       674 ~~~~~g~~~~~~~v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~  753 (943)
T PRK00349        674 HKEIEGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIE  753 (943)
T ss_pred             CcccccccCCCceEEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCCcccCCCCCCCCCCCcccccceEEEE
Confidence                00000                00                  00001233433322211                  


Q ss_pred             ------------------------------------CCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCc-ccccc
Q psy7365         385 ------------------------------------DRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGH-YSDRE  427 (601)
Q Consensus       385 ------------------------------------~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~-~~~~~  427 (601)
                                                          ..+|+.|++.|+..+.+.      ....+.|+.+||.. ..+++
T Consensus       754 ~~f~~~~~~~C~~C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f~~~~~i------~~~l~~L~~vgL~~l~l~~~  827 (943)
T PRK00349        754 MHFLPDVYVPCDVCKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKI------ARKLQTLVDVGLGYIKLGQP  827 (943)
T ss_pred             eccCCCccccCccccCccccccceEEEECCCCHHHHhcCcHHHHHHHHHhchhh------hHHHHHHHHCCCCcccccCC
Confidence                                                137899999887655332      23467899999986 57899


Q ss_pred             cCcCChHHHHHHHHHHHHhCCC---CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEE-
Q psy7365         428 VRTLSGGNKRKLSTAIALLGNT---PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM-  503 (601)
Q Consensus       428 ~~~LSgGqkQRl~lA~AL~~~P---~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL-  503 (601)
                      +.+||||||||+.||++|+.+|   +++||||||+|||+..++.++++|+++.++|.|||++||+++++. .||+|+.| 
T Consensus       828 ~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~-~aD~ii~Lg  906 (943)
T PRK00349        828 ATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK-TADWIIDLG  906 (943)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEec
Confidence            9999999999999999999999   999999999999999999999999999888999999999999986 69999999 


Q ss_pred             -----eCCEEEEecCHHHHHHH
Q psy7365         504 -----VNGQFTCLGSATHLKSK  520 (601)
Q Consensus       504 -----~~G~iv~~G~~~~L~~~  520 (601)
                           ++|++++.|+++++.+.
T Consensus       907 p~~G~~~G~Iv~~Gt~~el~~~  928 (943)
T PRK00349        907 PEGGDGGGEIVATGTPEEVAKV  928 (943)
T ss_pred             CCcCCCCCEEEEeCCHHHHHhC
Confidence                 79999999999998753

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=2e-38  Score=316.53  Aligned_cols=205  Identities=23%  Similarity=0.323  Sum_probs=173.9

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc--
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD--  122 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~--  122 (601)
                      .++++++.|..   ..++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++...  
T Consensus         3 ~~~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~g~~i~~~~~   71 (222)
T PRK10908          3 RFEHVSKAYLG---GRQALQGVTFHMRPGEMAFLTGHSGA--GKSTL------LKLICGIERPSAGKIWFSGHDITRLKN   71 (222)
T ss_pred             EEEeeEEEecC---CCeEEeeeeEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCceEEEECCEEcccCCh
Confidence            47899999831   24699999999988      999999  56665      5799999999999999999987531  


Q ss_pred             --hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh
Q psy7365         123 --MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       123 --~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                        ....++.++|+||++.+|+.+|+.||+.+.....+.+.++...++.++++.+|+.+..++.+.+||||||||+++||+
T Consensus        72 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara  151 (222)
T PRK10908         72 REVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARA  151 (222)
T ss_pred             hHHHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHH
Confidence              123467899999999998999999999987766666666666778899999999988999999999999999986543


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      |                                      +.+                                   |++
T Consensus       152 l--------------------------------------~~~-----------------------------------p~l  158 (222)
T PRK10908        152 V--------------------------------------VNK-----------------------------------PAV  158 (222)
T ss_pred             H--------------------------------------HcC-----------------------------------CCE
Confidence            2                                      233                                   589


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccc
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQC  344 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~  344 (601)
                      +||||||+|||+.++..++++|.++.     .+|.|+|++||+++++..+||++++|.+|+++.
T Consensus       159 lllDEPt~~LD~~~~~~l~~~l~~~~-----~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        159 LLADEPTGNLDDALSEGILRLFEEFN-----RVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHHHHH-----HCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence            99999999999999999999999873     347899999999999999999999999998754

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=2.3e-38  Score=317.83  Aligned_cols=206  Identities=30%  Similarity=0.455  Sum_probs=174.6

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc-hH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD-MT  124 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~-~~  124 (601)
                      +++|++.|+.    .++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++... ..
T Consensus         3 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~~~~~~~~   70 (232)
T cd03218           3 AENLSKRYGK----RKVVNGVSLSVKQGEIVGLLGPNGA--GKTTT------FYMIVGLVKPDSGKILLDGQDITKLPMH   70 (232)
T ss_pred             EEEEEEEeCC----EEeeccceeEecCCcEEEEECCCCC--CHHHH------HHHHhCCCCCCCcEEEECCEecccCCHh
Confidence            6899999853    4599999999988      999999  57665      6799999999999999999987532 22


Q ss_pred             H-hcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcc
Q psy7365         125 T-IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFN  203 (601)
Q Consensus       125 ~-~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~  203 (601)
                      . .++.+||+||++.+|+.+|+.||+.++....+....+...++.++++.+|+.+..++.+.+||||||||+++|+|   
T Consensus        71 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a---  147 (232)
T cd03218          71 KRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARA---  147 (232)
T ss_pred             HHHhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH---
Confidence            2 346799999999999999999999987655555555556678899999999999999999999999999975443   


Q ss_pred             hhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEE
Q psy7365         204 NKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVIL  283 (601)
Q Consensus       204 ~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liL  283 (601)
                                                         ++.+                                   |++|||
T Consensus       148 -----------------------------------l~~~-----------------------------------p~llll  157 (232)
T cd03218         148 -----------------------------------LATN-----------------------------------PKFLLL  157 (232)
T ss_pred             -----------------------------------HhcC-----------------------------------CCEEEe
Confidence                                               2233                                   589999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       284 DEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                      ||||+|||+.+++.++++|+++.     ..|+|+|++||+++++..+||++++|.+|++...++
T Consensus       158 DEPt~~LD~~~~~~~~~~l~~~~-----~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~  216 (232)
T cd03218         158 DEPFAGVDPIAVQDIQKIIKILK-----DRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGT  216 (232)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHH-----HCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeC
Confidence            99999999999999999999873     358999999999999999999999999999876654

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=8e-38  Score=307.20  Aligned_cols=269  Identities=20%  Similarity=0.362  Sum_probs=216.0

Q ss_pred             CcEEEEEecchhHHHhcCCEEEEecCCccccccCccc-------cccccccccccccccCCcccccccccCCCCcccCCC
Q psy7365         314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF-------LKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDR  386 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l-------Lk~~~g~g~~igld~~~~~~~~~ig~v~Q~~~l~~~  386 (601)
                      .++++   .++++...-+....+++...   .|+++.       +.++.|+..+.+.+.. ...+.+|||+|++.++|+.
T Consensus        14 ~k~av---~~isf~v~~G~i~GllG~NG---AGKTTtfRmILglle~~~G~I~~~g~~~~-~~~~~rIGyLPEERGLy~k   86 (300)
T COG4152          14 DKKAV---DNISFEVPPGEIFGLLGPNG---AGKTTTFRMILGLLEPTEGEITWNGGPLS-QEIKNRIGYLPEERGLYPK   86 (300)
T ss_pred             ceeee---cceeeeecCCeEEEeecCCC---CCccchHHHHhccCCccCceEEEcCcchh-hhhhhhcccChhhhccCcc
Confidence            45555   78888888888888887422   333332       3344444444443332 2356789999999999999


Q ss_pred             CCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHH
Q psy7365         387 LTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR  466 (601)
Q Consensus       387 lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~  466 (601)
                      +||.|.+.|++.++|++..+.++.+..||+++++..+..+++.+||.||+||+.+..+++|+|+++|||||+|||||.+.
T Consensus        87 ~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~  166 (300)
T COG4152          87 MTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNV  166 (300)
T ss_pred             CcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHhCCceEEEEEecCCCchhHHHHHhhc
Q psy7365         467 RFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSADAQTYLSLN  546 (601)
Q Consensus       467 ~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~~~~~~l~i~~~~~~~~~~~~~l~~~  546 (601)
                      +.+.+.|.+++++|.|||+|||.|+.++++||++++|++|+.+.+|+.+++++.+++.. +.+.-+ ...+++     ..
T Consensus       167 elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gkk~-~~ies~-~s~eeL-----~~  239 (300)
T COG4152         167 ELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKR-LVIESD-LSLEEL-----AN  239 (300)
T ss_pred             HHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcCCce-EEEecc-CchHHH-----hc
Confidence            99999999999999999999999999999999999999999999999999999998753 334422 111222     24


Q ss_pred             CCCceeEEe-eCcEEEEEEcCCcccHHHHHHHHHHccccCCCeeEEEecCCCCCCC
Q psy7365         547 LPVADLVET-HATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLEDS  601 (601)
Q Consensus       547 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~i~~~~v~~~sLEdv  601 (601)
                      +|++...+. ..+.+.+.+.+ +.....+|+.+...+.    |..|+...|||+|+
T Consensus       240 ipgi~~~~~~~~G~~~i~ie~-e~~a~~ifq~~a~~g~----i~~Fe~~~PsL~di  290 (300)
T COG4152         240 IPGILKITETKDGSWRIQIEN-ETVAREIFQEVARDGY----IQRFELQEPSLHDI  290 (300)
T ss_pred             CCCceeeeeccCCceEeeccc-chHHHHHHHHHhccce----eEEEeecCCCHHHH
Confidence            677765554 23344444443 3456678888865432    89999999999985

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=1.8e-38  Score=314.11  Aligned_cols=201  Identities=26%  Similarity=0.440  Sum_probs=172.8

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTT  125 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~  125 (601)
                      ++++++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++..   .
T Consensus         3 ~~~l~~~~~~----~~~l~~v~~~i~~G~~~~i~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~g~~~~~---~   67 (210)
T cd03269           3 VENVTKRFGR----VTALDDISFSVEKGEIFGLLGPNGA--GKTTT------IRMILGIILPDSGEVLFDGKPLDI---A   67 (210)
T ss_pred             EEEEEEEECC----EEEEeeeEEEEcCCcEEEEECCCCC--CHHHH------HHHHhCCCCCCceEEEECCCchhH---H
Confidence            7899999853    4599999999988      999999  57665      679999999999999999988742   3


Q ss_pred             hcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchh
Q psy7365         126 IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNK  205 (601)
Q Consensus       126 ~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~  205 (601)
                      .++.++|+||++.+|+.+|+.||+.++...++.+..+..+++.++++.+|+++..++++.+||||||||+++|++|    
T Consensus        68 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al----  143 (210)
T cd03269          68 ARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAV----  143 (210)
T ss_pred             HHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHH----
Confidence            4668999999999999999999999877666666566667889999999999889999999999999999754322    


Q ss_pred             hHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEec
Q psy7365         206 AWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDE  285 (601)
Q Consensus       206 ~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDE  285 (601)
                                                        +.                                   +|+++||||
T Consensus       144 ----------------------------------~~-----------------------------------~p~~lllDE  154 (210)
T cd03269         144 ----------------------------------IH-----------------------------------DPELLILDE  154 (210)
T ss_pred             ----------------------------------hc-----------------------------------CCCEEEEeC
Confidence                                              22                                   258999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc
Q psy7365         286 PTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  345 (601)
Q Consensus       286 PtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~  345 (601)
                      ||+|||+.++..+++.|+++.     .+|+|||++||+.+++..+||++++|.+|++...
T Consensus       155 P~~~LD~~~~~~~~~~l~~~~-----~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~  209 (210)
T cd03269         155 PFSGLDPVNVELLKDVIRELA-----RAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY  209 (210)
T ss_pred             CCcCCCHHHHHHHHHHHHHHH-----HCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEec
Confidence            999999999999999999873     3478999999999999999999999999997643

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-38  Score=328.30  Aligned_cols=212  Identities=23%  Similarity=0.327  Sum_probs=180.4

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      ..+++|++.|++.+ ..++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. .
T Consensus         5 l~~~~l~~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~i~~~~   75 (279)
T PRK13650          5 IEVKNLTFKYKEDQ-EKYTLNDVSFHVKQGEWLSIIGHNGS--GKSTT------VRLIDGLLEAESGQIIIDGDLLTEEN   75 (279)
T ss_pred             EEEEeEEEEcCCCC-cCeeeeeeEEEEeCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCcEEEECCEECCcCc
Confidence            45899999986422 24599999999988      999999  56655      579999999999999999999854 3


Q ss_pred             hHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhh
Q psy7365         123 MTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVW  201 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~  201 (601)
                      ...+++.+||+||+|. +++..||.||+.|+....+.++++..+++.++++.+||.+..++.+.+||||||||+++||||
T Consensus        76 ~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral  155 (279)
T PRK13650         76 VWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAV  155 (279)
T ss_pred             HHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence            3456678999999984 778899999999987777777777778899999999999999999999999999999865433


Q ss_pred             cchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEE
Q psy7365         202 FNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTV  281 (601)
Q Consensus       202 ~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~l  281 (601)
                      +                                      .+                                   |++|
T Consensus       156 ~--------------------------------------~~-----------------------------------p~lL  162 (279)
T PRK13650        156 A--------------------------------------MR-----------------------------------PKII  162 (279)
T ss_pred             H--------------------------------------cC-----------------------------------CCEE
Confidence            2                                      32                                   5899


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       282 iLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      ||||||+|||+.++..+++.|+++.    +..|+|||++||+++++. .|||+++|.+|+++..+++
T Consensus       163 lLDEPt~~LD~~~~~~l~~~l~~l~----~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~~g~~  224 (279)
T PRK13650        163 ILDEATSMLDPEGRLELIKTIKGIR----DDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTP  224 (279)
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCH
Confidence            9999999999999999999999883    224899999999999984 7999999999999877654

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=2.8e-38  Score=313.14  Aligned_cols=202  Identities=27%  Similarity=0.412  Sum_probs=172.0

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc---
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD---  122 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~---  122 (601)
                      ++++++.|+..   .++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++...   
T Consensus         3 ~~~l~~~~~~~---~~~l~~~sl~i~~G~~~~i~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~g~~i~~~~~~   71 (214)
T cd03292           3 FINVTKTYPNG---TAALDGINISISAGEFVFLVGPSGA--GKSTL------LKLIYKEELPTSGTIRVNGQDVSDLRGR   71 (214)
T ss_pred             EEEEEEEeCCC---ceeeeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCceEEEECCEEcccCCHH
Confidence            68899998431   4599999999988      999999  56665      6799999999999999999987532   


Q ss_pred             -hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhh
Q psy7365         123 -MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVW  201 (601)
Q Consensus       123 -~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~  201 (601)
                       ....++.++|+||++.+|+.+|+.||+.++....+.+.++..+++.++++.+|+++..++++.+||||||||+++||++
T Consensus        72 ~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral  151 (214)
T cd03292          72 AIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAI  151 (214)
T ss_pred             HHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence             1235678999999999999999999999887665655556667889999999999989999999999999999754432


Q ss_pred             cchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEE
Q psy7365         202 FNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTV  281 (601)
Q Consensus       202 ~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~l  281 (601)
                                                            +.+                                   |+++
T Consensus       152 --------------------------------------~~~-----------------------------------p~ll  158 (214)
T cd03292         152 --------------------------------------VNS-----------------------------------PTIL  158 (214)
T ss_pred             --------------------------------------HcC-----------------------------------CCEE
Confidence                                                  232                                   5899


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcc
Q psy7365         282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL  342 (601)
Q Consensus       282 iLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkI  342 (601)
                      ||||||+|||+.++..+++.|+++.     .+|+|+|++||+.+++..+||++++|.+|++
T Consensus       159 llDEPt~~LD~~~~~~~~~~l~~~~-----~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         159 IADEPTGNLDPDTTWEIMNLLKKIN-----KAGTTVVVATHAKELVDTTRHRVIALERGKL  214 (214)
T ss_pred             EEeCCCCcCCHHHHHHHHHHHHHHH-----HcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            9999999999999999999999872     3589999999999999999999999999874

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=2.5e-38  Score=313.09  Aligned_cols=202  Identities=30%  Similarity=0.440  Sum_probs=169.3

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-chH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DMT  124 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~~  124 (601)
                      +++|++.|++.  ..++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. +..
T Consensus         2 ~~~l~~~~~~~--~~~il~~vs~~i~~G~~~~l~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~g~~~~~~~~~   71 (211)
T cd03225           2 LKNLSFSYPDG--ARPALDDISLTIKKGEFVLIVGPNGS--GKSTL------LRLLNGLLGPTSGEVLVDGKDLTKLSLK   71 (211)
T ss_pred             ceeEEEecCCC--CeeeecceEEEEcCCcEEEEECCCCC--CHHHH------HHHHhcCCCCCCceEEECCEEcccCCHH
Confidence            67899998641  24599999999988      999999  56665      579999999999999999998754 234


Q ss_pred             HhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcc
Q psy7365         125 TIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFN  203 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~  203 (601)
                      ..++.++|+||++. .++.+|+.||+.++....+........++.++++.+|+.+..++++.+||||||||+++||||  
T Consensus        72 ~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral--  149 (211)
T cd03225          72 ELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVL--  149 (211)
T ss_pred             HHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH--
Confidence            45678999999985 467899999998876555555555566788999999999888999999999999999754432  


Q ss_pred             hhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEE
Q psy7365         204 NKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVIL  283 (601)
Q Consensus       204 ~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liL  283 (601)
                                                          +.+                                   |+++||
T Consensus       150 ------------------------------------~~~-----------------------------------p~llll  158 (211)
T cd03225         150 ------------------------------------AMD-----------------------------------PDILLL  158 (211)
T ss_pred             ------------------------------------hcC-----------------------------------CCEEEE
Confidence                                                233                                   589999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCc
Q psy7365         284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK  341 (601)
Q Consensus       284 DEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~Gk  341 (601)
                      ||||+|||+.++..+++.|.++.     .+|.|||++||+++++..+||++++|.+|+
T Consensus       159 DEPt~~LD~~~~~~~~~~l~~~~-----~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~  211 (211)
T cd03225         159 DEPTAGLDPAGRRELLELLKKLK-----AEGKTIIIVTHDLDLLLELADRVIVLEDGK  211 (211)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHH-----HcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence            99999999999999999999873     248999999999999999999999999884

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=1.9e-38  Score=313.48  Aligned_cols=200  Identities=25%  Similarity=0.428  Sum_probs=170.3

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchH
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMT  124 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~  124 (601)
                      .++++++.|+.    .++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++... .
T Consensus         2 ~~~~l~~~~~~----~~~l~~~~~~i~~G~~~~i~G~nGs--GKSTL------l~~l~Gl~~~~~G~i~~~g~~~~~~-~   68 (208)
T cd03268           2 KTNDLTKTYGK----KRVLDDISLHVKKGEIYGFLGPNGA--GKTTT------MKIILGLIKPDSGEITFDGKSYQKN-I   68 (208)
T ss_pred             EEEEEEEEECC----eEeEeeeEEEEcCCcEEEEECCCCC--CHHHH------HHHHhCCcCCCceEEEECCCcccch-H
Confidence            37899999853    4699999999988      999999  57665      6799999999999999999987543 4


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcch
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNN  204 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~  204 (601)
                      ..++.++|+||++.+|+.+||.||+.++....+.+    ..++.++++.+|+.+..++++.+||||||||+++|+++   
T Consensus        69 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al---  141 (208)
T cd03268          69 EALRRIGALIEAPGFYPNLTARENLRLLARLLGIR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALAL---  141 (208)
T ss_pred             HHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHH---
Confidence            45678999999999999999999999876554432    34678899999999999999999999999999754432   


Q ss_pred             hhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEe
Q psy7365         205 KAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILD  284 (601)
Q Consensus       205 ~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLD  284 (601)
                                                         +.+                                   |+++|||
T Consensus       142 -----------------------------------~~~-----------------------------------p~llllD  151 (208)
T cd03268         142 -----------------------------------LGN-----------------------------------PDLLILD  151 (208)
T ss_pred             -----------------------------------hcC-----------------------------------CCEEEEC
Confidence                                               222                                   5899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc
Q psy7365         285 EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  345 (601)
Q Consensus       285 EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~  345 (601)
                      |||+|||+.++..++++|+++.     .+|+|+|++||+++++..+||++++|.+|+++..
T Consensus       152 EPt~~LD~~~~~~l~~~l~~~~-----~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~  207 (208)
T cd03268         152 EPTNGLDPDGIKELRELILSLR-----DQGITVLISSHLLSEIQKVADRIGIINKGKLIEE  207 (208)
T ss_pred             CCcccCCHHHHHHHHHHHHHHH-----HCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEec
Confidence            9999999999999999999873     2589999999999999999999999999997654

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.8e-38  Score=332.63  Aligned_cols=215  Identities=23%  Similarity=0.338  Sum_probs=180.7

Q ss_pred             hhhhhcccccccccCC-CccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCC
Q psy7365          48 YVSLFESLSENRDKLG-IDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIR  120 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~  120 (601)
                      .++.+++|++.|+... ....+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|+++|.++.
T Consensus        20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGs--GKSTL------l~~L~Gl~~p~~G~I~i~g~~~~   91 (320)
T PRK13631         20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGS--GKSTL------VTHFNGLIKSKYGTIQVGDIYIG   91 (320)
T ss_pred             ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCCeEEECCEEcc
Confidence            4566999999986422 234699999999988      999999  56665      57999999999999999998874


Q ss_pred             Cc-----------------hHHhcccEEEEccCC--CCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC-ccc
Q psy7365         121 TD-----------------MTTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP-HKR  180 (601)
Q Consensus       121 ~~-----------------~~~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~  180 (601)
                      ..                 ....++.+|||||+|  .+| ..||.||+.|+....+.+..+...++.++++.+||. ...
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~  170 (320)
T PRK13631         92 DKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLF-KDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYL  170 (320)
T ss_pred             cccccccccccccccccchHHHHHhcEEEEEECchhccc-cchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHh
Confidence            31                 235678899999998  355 469999999987666677777778899999999997 678


Q ss_pred             CCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhc
Q psy7365         181 TSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAG  260 (601)
Q Consensus       181 ~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  260 (601)
                      ++.+.+||||||||++|||||+                                      .+                  
T Consensus       171 ~~~~~~LSgGqkqRvaiAraL~--------------------------------------~~------------------  194 (320)
T PRK13631        171 ERSPFGLSGGQKRRVAIAGILA--------------------------------------IQ------------------  194 (320)
T ss_pred             cCCcccCCHHHHHHHHHHHHHH--------------------------------------cC------------------
Confidence            9999999999999998654332                                      22                  


Q ss_pred             chhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCC
Q psy7365         261 TSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG  340 (601)
Q Consensus       261 ~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~G  340 (601)
                                       |++|||||||+|||+.++..++++|.++.     .+|.|||++||+++++..+|||+++|.+|
T Consensus       195 -----------------p~iLLLDEPtsgLD~~~~~~l~~~L~~l~-----~~g~TiiivtHd~~~~~~~adri~vl~~G  252 (320)
T PRK13631        195 -----------------PEILIFDEPTAGLDPKGEHEMMQLILDAK-----ANNKTVFVITHTMEHVLEVADEVIVMDKG  252 (320)
T ss_pred             -----------------CCEEEEECCccCCCHHHHHHHHHHHHHHH-----HCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence                             58999999999999999999999999873     35899999999999999999999999999


Q ss_pred             ccccccCcc
Q psy7365         341 KLQCCGSSV  349 (601)
Q Consensus       341 kIv~~G~~~  349 (601)
                      +++..|++.
T Consensus       253 ~i~~~g~~~  261 (320)
T PRK13631        253 KILKTGTPY  261 (320)
T ss_pred             EEEEeCCHH
Confidence            998877643

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.9e-38  Score=327.90  Aligned_cols=214  Identities=25%  Similarity=0.343  Sum_probs=178.3

Q ss_pred             hhhcccccccccCC-CccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365          50 SLFESLSENRDKLG-IDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-  121 (601)
Q Consensus        50 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-  121 (601)
                      +.+++|++.|++.. ....+++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++.. 
T Consensus         3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGa--GKSTL------l~~l~Gl~~p~~G~i~~~g~~~~~~   74 (287)
T PRK13641          3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGS--GKSTL------MQHFNALLKPSSGTITIAGYHITPE   74 (287)
T ss_pred             EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCcEEEECCEECccc
Confidence            34899999986422 124699999999988      999999  56665      679999999999999999998753 


Q ss_pred             ----chHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC-cccCCccccCChHHHhhh
Q psy7365         122 ----DMTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP-HKRTSLANTLSGGMQRKL  195 (601)
Q Consensus       122 ----~~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qr~  195 (601)
                          .....++.+||+||+|. .++.+||.||+.|+....+..+++...++.++++.+||. ...++++.+||||||||+
T Consensus        75 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl  154 (287)
T PRK13641         75 TGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRV  154 (287)
T ss_pred             cccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHH
Confidence                12345678999999983 333689999999877666666667777899999999997 688999999999999999


Q ss_pred             hchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhcc
Q psy7365         196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSF  275 (601)
Q Consensus       196 ~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  275 (601)
                      ++||||                                      +.+                                 
T Consensus       155 ~laral--------------------------------------~~~---------------------------------  163 (287)
T PRK13641        155 AIAGVM--------------------------------------AYE---------------------------------  163 (287)
T ss_pred             HHHHHH--------------------------------------HcC---------------------------------
Confidence            865433                                      222                                 


Q ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       276 ~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                        |++|||||||+|||+.++..++++|+++.     ..|.|||++||+++++..+||++++|.+|+++..+++.
T Consensus       164 --p~lLlLDEPt~gLD~~~~~~l~~~l~~l~-----~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~  230 (287)
T PRK13641        164 --PEILCLDEPAAGLDPEGRKEMMQLFKDYQ-----KAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK  230 (287)
T ss_pred             --CCEEEEECCCCCCCHHHHHHHHHHHHHHH-----hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence              58999999999999999999999999872     35899999999999999999999999999998777543

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=2.3e-38  Score=319.65  Aligned_cols=208  Identities=23%  Similarity=0.340  Sum_probs=174.2

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchH
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMT  124 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~  124 (601)
                      .+++|++.|++    .++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++.... 
T Consensus         4 ~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~~~~G~i~~~g~~~~~~~-   70 (239)
T cd03296           4 EVRNVSKRFGD----FVALDDVSLDIPSGELVALLGPSGS--GKTTL------LRLIAGLERPDSGTILFGGEDATDVP-   70 (239)
T ss_pred             EEEeEEEEECC----EEeeeeeeEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCceEEEECCEECCcCC-
Confidence            48899999864    4599999999988      999999  56665      67999999999999999999875321 


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCC----ChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV----PKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                      ..++.++|+||+|.+|+.+||.||+.|+....+.    +..+...++.++++.+|+.+..++++.+||||||||+++|||
T Consensus        71 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a  150 (239)
T cd03296          71 VQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARA  150 (239)
T ss_pred             ccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHH
Confidence            1246799999999999999999999987654433    334445678899999999988999999999999999986543


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      |                                      +.+                                   |++
T Consensus       151 l--------------------------------------~~~-----------------------------------p~l  157 (239)
T cd03296         151 L--------------------------------------AVE-----------------------------------PKV  157 (239)
T ss_pred             H--------------------------------------hcC-----------------------------------CCE
Confidence            3                                      222                                   589


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      +||||||+|||+.+++.++++|.++.    +..|+|||++||+++++...||++++|.+|+++..+.+
T Consensus       158 lllDEP~~~LD~~~~~~l~~~l~~~~----~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~  221 (239)
T cd03296         158 LLLDEPFGALDAKVRKELRRWLRRLH----DELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTP  221 (239)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHHHH----HHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCH
Confidence            99999999999999999999999873    22489999999999999999999999999998876643

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=2e-38  Score=342.18  Aligned_cols=211  Identities=19%  Similarity=0.305  Sum_probs=179.6

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-  121 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-  121 (601)
                      +..++||++.|++    .++++|+||++.+      +|||||  |||||      .|+|+|+++|++|+|+++|+++.. 
T Consensus         3 ~L~~~nls~~y~~----~~vL~~vs~~i~~Geiv~liGpNGa--GKSTL------Lk~LaGll~p~sG~I~l~G~~i~~~   70 (402)
T PRK09536          3 MIDVSDLSVEFGD----TTVLDGVDLSVREGSLVGLVGPNGA--GKTTL------LRAINGTLTPTAGTVLVAGDDVEAL   70 (402)
T ss_pred             eEEEeeEEEEECC----EEEEEeeEEEECCCCEEEEECCCCc--hHHHH------HHHHhcCCCCCCcEEEECCEEcCcC
Confidence            4568999999863    4699999999988      999999  56655      679999999999999999998865 


Q ss_pred             chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhc--CC--ChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhc
Q psy7365         122 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK--QV--PKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDN  197 (601)
Q Consensus       122 ~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~--~~--~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~  197 (601)
                      ....+++++||+||++.+++.+||.||+.++...+  .+  .....+++++++++.+|+.+..++++.+||||||||++|
T Consensus        71 ~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~I  150 (402)
T PRK09536         71 SARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLL  150 (402)
T ss_pred             CHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence            34566788999999999999999999999865322  11  133456678999999999999999999999999999986


Q ss_pred             hhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCC
Q psy7365         198 VKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVP  277 (601)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  277 (601)
                      |||                                      ++++                                   
T Consensus       151 ArA--------------------------------------L~~~-----------------------------------  157 (402)
T PRK09536        151 ARA--------------------------------------LAQA-----------------------------------  157 (402)
T ss_pred             HHH--------------------------------------HHcC-----------------------------------
Confidence            543                                      3333                                   


Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                      |++|||||||+|||+.++..++++|+++.     .+|+|||++||+++++.++|||+++|++|+++..|++.
T Consensus       158 P~iLLLDEPtsgLD~~~~~~l~~lL~~l~-----~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~  224 (402)
T PRK09536        158 TPVLLLDEPTASLDINHQVRTLELVRRLV-----DDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPA  224 (402)
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHH-----hcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence            58999999999999999999999999983     25889999999999999999999999999999888654

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=2.9e-38  Score=311.58  Aligned_cols=197  Identities=25%  Similarity=0.331  Sum_probs=164.8

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTT  125 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~  125 (601)
                      ++||++.|++.   .++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++..  ..
T Consensus         2 ~~~l~~~~~~~---~~~l~~v~~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~~~~--~~   68 (205)
T cd03226           2 IENISFSYKKG---TEILDDLSLDLYAGEIIALTGKNGA--GKTTL------AKILAGLIKESSGSILLNGKPIKA--KE   68 (205)
T ss_pred             cccEEEEeCCc---CceeeeeeEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCceEEEECCEEhhh--HH
Confidence            67899998541   4599999999988      999999  56665      679999999999999999998743  34


Q ss_pred             hcccEEEEccCCC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcch
Q psy7365         126 IRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNN  204 (601)
Q Consensus       126 ~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~  204 (601)
                      .++.+||+||++. .++.+|+.||+.++....+.    ...++.++++.+|+.+..++++.+||||||||+++||||   
T Consensus        69 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral---  141 (205)
T cd03226          69 RRKSIGYVMQDVDYQLFTDSVREELLLGLKELDA----GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAAL---  141 (205)
T ss_pred             hhcceEEEecChhhhhhhccHHHHHhhhhhhcCc----cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHH---
Confidence            5668999999985 34578999999886554331    125678999999999999999999999999999865432   


Q ss_pred             hhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEe
Q psy7365         205 KAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILD  284 (601)
Q Consensus       205 ~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLD  284 (601)
                                                         +.+                                   |+++|||
T Consensus       142 -----------------------------------~~~-----------------------------------p~llllD  151 (205)
T cd03226         142 -----------------------------------LSG-----------------------------------KDLLIFD  151 (205)
T ss_pred             -----------------------------------HhC-----------------------------------CCEEEEe
Confidence                                               222                                   5899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccc
Q psy7365         285 EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQ  343 (601)
Q Consensus       285 EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv  343 (601)
                      |||+|||+.++..+++.|+++.     .+|.|+|++||+++++..+||++++|.+|+++
T Consensus       152 EPt~~LD~~~~~~l~~~l~~~~-----~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         152 EPTSGLDYKNMERVGELIRELA-----AQGKAVIVITHDYEFLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             CCCccCCHHHHHHHHHHHHHHH-----HCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence            9999999999999999999873     35899999999999999999999999999864

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=4.1e-38  Score=313.67  Aligned_cols=207  Identities=23%  Similarity=0.340  Sum_probs=170.5

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc-h
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD-M  123 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~-~  123 (601)
                      .+++|++.|++.....++++++||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++... .
T Consensus         3 ~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGs--GKSTL------l~~i~G~~~~~~G~i~~~g~~~~~~~~   74 (221)
T TIGR02211         3 KCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGS--GKSTL------LHLLGGLDNPTSGEVLFNGQSLSKLSS   74 (221)
T ss_pred             EEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCC--CHHHH------HHHHhCCCCCCCcEEEECCEEhhhcCH
Confidence            4789999986433235699999999988      999999  57665      6799999999999999999987532 2


Q ss_pred             H---Hhc-ccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365         124 T---TIR-RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK  199 (601)
Q Consensus       124 ~---~~~-~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~  199 (601)
                      .   ..+ +.++|+||++.+|+.+|++||+.+.....+.+..+...++.++++.+|+.+..++++.+||||||||+++||
T Consensus        75 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar  154 (221)
T TIGR02211        75 NERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIAR  154 (221)
T ss_pred             hHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence            1   123 679999999999999999999998665444554455567889999999999899999999999999998644


Q ss_pred             hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365         200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS  279 (601)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  279 (601)
                      +|                                      +.+                                   |+
T Consensus       155 al--------------------------------------~~~-----------------------------------p~  161 (221)
T TIGR02211       155 AL--------------------------------------VNQ-----------------------------------PS  161 (221)
T ss_pred             HH--------------------------------------hCC-----------------------------------CC
Confidence            32                                      222                                   58


Q ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccc
Q psy7365         280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQ  343 (601)
Q Consensus       280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv  343 (601)
                      ++||||||+|||+.++..+++.|+++.    +..|+|+|++||+++++.. ||++++|.+|+++
T Consensus       162 illlDEPt~~LD~~~~~~l~~~l~~~~----~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~  220 (221)
T TIGR02211       162 LVLADEPTGNLDNNNAKIIFDLMLELN----RELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF  220 (221)
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence            999999999999999999999999873    2248999999999999865 7999999999864

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=4.2e-38  Score=317.46  Aligned_cols=209  Identities=28%  Similarity=0.399  Sum_probs=173.1

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc---
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD---  122 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~---  122 (601)
                      +++|++.|++   +.++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++...   
T Consensus         3 ~~~l~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~~~~G~i~~~g~~~~~~~~~   71 (241)
T cd03256           3 VENLSKTYPN---GKKALKDVSLSINPGEFVALIGPSGA--GKSTL------LRCLNGLVEPTSGSVLIDGTDINKLKGK   71 (241)
T ss_pred             EeeEEEecCC---ccEEEecceEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCcCCCCceEEECCEeccccCHh
Confidence            6899999864   14599999999988      999999  56665      5799999999999999999987532   


Q ss_pred             -hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhh--------cCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHh
Q psy7365         123 -MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL--------KQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQR  193 (601)
Q Consensus       123 -~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~--------~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~q  193 (601)
                       ....++.++|+||++.+|+.+||.||+.+....        .+.......+++.++++.+|+.+..++++.+|||||||
T Consensus        72 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q  151 (241)
T cd03256          72 ALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQ  151 (241)
T ss_pred             HHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHH
Confidence             234567899999999999999999999875321        12222344567889999999998899999999999999


Q ss_pred             hhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhh
Q psy7365         194 KLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAM  273 (601)
Q Consensus       194 r~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  273 (601)
                      |+++||++                                      +++                               
T Consensus       152 rv~la~al--------------------------------------~~~-------------------------------  162 (241)
T cd03256         152 RVAIARAL--------------------------------------MQQ-------------------------------  162 (241)
T ss_pred             HHHHHHHH--------------------------------------hcC-------------------------------
Confidence            99864432                                      233                               


Q ss_pred             ccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         274 SFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       274 ~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                          |+++||||||+|||+.++..+++.|+++.    +..|+|||++||+++++..+||++++|.+|+++..+++
T Consensus       163 ----p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~  229 (241)
T cd03256         163 ----PKLILADEPVASLDPASSRQVMDLLKRIN----REEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPP  229 (241)
T ss_pred             ----CCEEEEeCccccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCH
Confidence                58999999999999999999999999873    22489999999999999999999999999998876643

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=5.2e-38  Score=317.67  Aligned_cols=208  Identities=28%  Similarity=0.452  Sum_probs=176.2

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-chH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DMT  124 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~~  124 (601)
                      +++|++.|++.   .++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++.. ...
T Consensus         3 ~~~l~~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~g~~~~~~~~~   71 (242)
T cd03295           3 FENVTKRYGGG---KKAVNNLNLEIAKGEFLVLIGPSGS--GKTTT------MKMINRLIEPTSGEIFIDGEDIREQDPV   71 (242)
T ss_pred             EEEEEEEeCCc---ceEeeeeEEEECCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCceEEECCeEcCcCChH
Confidence            68899998641   4599999999988      999999  57665      679999999999999999998754 334


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCc--ccCCccccCChHHHhhhhchhhhc
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPH--KRTSLANTLSGGMQRKLDNVKVWF  202 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--~~~~~~~~LSgG~~qr~~~~~~~~  202 (601)
                      ..++.++|+||++.+|+.+|+.||+.++....+.+......++.++++.+|+.+  ..++++.+||||||||+++|||+ 
T Consensus        72 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral-  150 (242)
T cd03295          72 ELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARAL-  150 (242)
T ss_pred             HhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHH-
Confidence            456789999999999999999999998766656655556677889999999996  78999999999999999754432 


Q ss_pred             chhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEE
Q psy7365         203 NNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVI  282 (601)
Q Consensus       203 ~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~li  282 (601)
                                                           +.+                                   |+++|
T Consensus       151 -------------------------------------~~~-----------------------------------p~lll  158 (242)
T cd03295         151 -------------------------------------AAD-----------------------------------PPLLL  158 (242)
T ss_pred             -------------------------------------hcC-----------------------------------CCEEE
Confidence                                                 233                                   58999


Q ss_pred             EecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       283 LDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                      |||||+|||+.++..+++.|+++.    +..|+|||++||+++++..+||++++|.+|+++..+.
T Consensus       159 lDEPt~~LD~~~~~~l~~~L~~~~----~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~  219 (242)
T cd03295         159 MDEPFGALDPITRDQLQEEFKRLQ----QELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGT  219 (242)
T ss_pred             ecCCcccCCHHHHHHHHHHHHHHH----HHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecC
Confidence            999999999999999999999873    2248999999999999999999999999999876654

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.4e-38  Score=326.39  Aligned_cols=213  Identities=25%  Similarity=0.382  Sum_probs=178.6

Q ss_pred             hhccccccccc-CCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC--
Q psy7365          51 LFESLSENRDK-LGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT--  121 (601)
Q Consensus        51 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~--  121 (601)
                      .+++|++.|+. .....++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++..  
T Consensus         4 ~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGs--GKSTL------l~~L~Gl~~p~~G~i~~~g~~i~~~~   75 (286)
T PRK13646          4 RFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGS--GKSTL------IQNINALLKPTTGTVTVDDITITHKT   75 (286)
T ss_pred             EEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCcEEEECCEECcccc
Confidence            48899999863 22235699999999988      999999  56655      579999999999999999998853  


Q ss_pred             ---chHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC-cccCCccccCChHHHhhhh
Q psy7365         122 ---DMTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP-HKRTSLANTLSGGMQRKLD  196 (601)
Q Consensus       122 ---~~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qr~~  196 (601)
                         ....+++.+|||||+|. .++..||.||+.|+....+.+.++...++.++++.+||. +..++.+.+||||||||++
T Consensus        76 ~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~  155 (286)
T PRK13646         76 KDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIA  155 (286)
T ss_pred             ccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence               12356778999999973 333469999999987776777777778899999999997 6789999999999999998


Q ss_pred             chhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccC
Q psy7365         197 NVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFV  276 (601)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  276 (601)
                      +||||                                      +.+                                  
T Consensus       156 laraL--------------------------------------~~~----------------------------------  163 (286)
T PRK13646        156 IVSIL--------------------------------------AMN----------------------------------  163 (286)
T ss_pred             HHHHH--------------------------------------HhC----------------------------------
Confidence            65432                                      222                                  


Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                       |+++||||||+|||+.++..++++|++++    +..|.|||++||+++++..+|||+++|.+|+++..+++
T Consensus       164 -p~illlDEPt~~LD~~~~~~l~~~l~~l~----~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~  230 (286)
T PRK13646        164 -PDIIVLDEPTAGLDPQSKRQVMRLLKSLQ----TDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSP  230 (286)
T ss_pred             -CCEEEEECCcccCCHHHHHHHHHHHHHHH----HhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence             58999999999999999999999999984    23589999999999999999999999999999887754

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=5.5e-38  Score=310.82  Aligned_cols=201  Identities=24%  Similarity=0.363  Sum_probs=170.9

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC---c
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT---D  122 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~---~  122 (601)
                      +++|++.|++    .++++++||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++..   .
T Consensus         3 ~~~l~~~~~~----~~~l~~~s~~i~~G~~~~l~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~g~~~~~~~~~   70 (213)
T cd03262           3 IKNLHKSFGD----FHVLKGIDLTVKKGEVVVIIGPSGS--GKSTL------LRCINLLEEPDSGTIIIDGLKLTDDKKN   70 (213)
T ss_pred             EEEEEEEECC----eEeecCceEEECCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCceEEECCEECCccchh
Confidence            7899999864    3599999999988      999999  56665      679999999999999999998743   2


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHh-hcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhh
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ-LKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVW  201 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~  201 (601)
                      ....++.++|+||++.+|+.+|+.||+.++.. ..+.+.++..+++.++++.+|+.+..++++.+||||||||+++|+++
T Consensus        71 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al  150 (213)
T cd03262          71 INELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL  150 (213)
T ss_pred             HHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHH
Confidence            33456789999999999999999999988643 33555555667788999999999889999999999999999754432


Q ss_pred             cchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEE
Q psy7365         202 FNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTV  281 (601)
Q Consensus       202 ~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~l  281 (601)
                                                            +++                                   |+++
T Consensus       151 --------------------------------------~~~-----------------------------------p~ll  157 (213)
T cd03262         151 --------------------------------------AMN-----------------------------------PKVM  157 (213)
T ss_pred             --------------------------------------hcC-----------------------------------CCEE
Confidence                                                  233                                   5899


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcc
Q psy7365         282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL  342 (601)
Q Consensus       282 iLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkI  342 (601)
                      ||||||+|||+.++..+++.|+++.     ..|+|+|++||+++++..+||++++|.+|++
T Consensus       158 llDEP~~~LD~~~~~~l~~~l~~~~-----~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         158 LFDEPTSALDPELVGEVLDVMKDLA-----EEGMTMVVVTHEMGFAREVADRVIFMDDGRI  213 (213)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHHH-----HcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            9999999999999999999999873     3589999999999999999999999999874

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=5.8e-38  Score=322.66  Aligned_cols=209  Identities=27%  Similarity=0.396  Sum_probs=176.0

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc-h
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD-M  123 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~-~  123 (601)
                      .++++++.|+..    .+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++... .
T Consensus        26 ~~~~~~~~~~~~----~il~~is~~i~~Ge~~~l~G~nGs--GKSTL------l~~L~Gl~~p~~G~i~i~g~~~~~~~~   93 (269)
T cd03294          26 SKEEILKKTGQT----VGVNDVSLDVREGEIFVIMGLSGS--GKSTL------LRCINRLIEPTSGKVLIDGQDIAAMSR   93 (269)
T ss_pred             hhhhhhhhcCCc----eEeeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCeEEEECCEEccccCh
Confidence            467899998754    489999999988      999999  56665      5799999999999999999987532 1


Q ss_pred             HH----hcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365         124 TT----IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK  199 (601)
Q Consensus       124 ~~----~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~  199 (601)
                      ..    .++.+||+||++.+|+.+||.||+.++....+.+......++.++++.+||.+..++++.+||||||||+++||
T Consensus        94 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAr  173 (269)
T cd03294          94 KELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLAR  173 (269)
T ss_pred             hhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHH
Confidence            11    24579999999999999999999998766555555555677889999999999999999999999999998654


Q ss_pred             hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365         200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS  279 (601)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  279 (601)
                      ||                                      +++                                   |+
T Consensus       174 al--------------------------------------~~~-----------------------------------p~  180 (269)
T cd03294         174 AL--------------------------------------AVD-----------------------------------PD  180 (269)
T ss_pred             HH--------------------------------------hcC-----------------------------------CC
Confidence            33                                      233                                   58


Q ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      ++||||||+|||+.+++.++++|.++.    +..|+|||++||+++++..+||++++|.+|+++..++.
T Consensus       181 illLDEPt~~LD~~~~~~l~~~l~~~~----~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~  245 (269)
T cd03294         181 ILLMDEAFSALDPLIRREMQDELLRLQ----AELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTP  245 (269)
T ss_pred             EEEEcCCCccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence            999999999999999999999999873    23489999999999999999999999999998876643

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=6.3e-38  Score=316.52  Aligned_cols=208  Identities=23%  Similarity=0.384  Sum_probs=175.5

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC---
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT---  121 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~---  121 (601)
                      .++++++.|+.    .++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++..   
T Consensus         3 ~~~~l~~~~~~----~~il~~~s~~i~~Ge~~~l~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~g~~~~~~~~   70 (240)
T PRK09493          3 EFKNVSKHFGP----TQVLHNIDLNIDQGEVVVIIGPSGS--GKSTL------LRCINKLEEITSGDLIVDGLKVNDPKV   70 (240)
T ss_pred             EEEeEEEEECC----eEEeeeeeEEEcCCcEEEEECCCCC--CHHHH------HHHHhCCCCCCceEEEECCEECCcCCh
Confidence            47899999863    4599999999988      999999  56665      579999999999999999998753   


Q ss_pred             chHHhcccEEEEccCCCCCCCCCHHHHHHHhHh-hcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh
Q psy7365         122 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ-LKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       122 ~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                      .....++.+||+||++.+|+.+||.||+.|+.. ..+.+..+...++.++++.+|+++..++++.+||||||||+++||+
T Consensus        71 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~a  150 (240)
T PRK09493         71 DERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARA  150 (240)
T ss_pred             hHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHH
Confidence            223456789999999999999999999988643 2345555566778899999999988899999999999999986543


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      |                                      +.+                                   |++
T Consensus       151 l--------------------------------------~~~-----------------------------------p~l  157 (240)
T PRK09493        151 L--------------------------------------AVK-----------------------------------PKL  157 (240)
T ss_pred             H--------------------------------------hcC-----------------------------------CCE
Confidence            2                                      222                                   589


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      +||||||+|||+.++..++++|+++.     .+|+|+|++||+++++..+||++++|.+|+++..+..
T Consensus       158 lllDEP~~~LD~~~~~~l~~~l~~~~-----~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~  220 (240)
T PRK09493        158 MLFDEPTSALDPELRHEVLKVMQDLA-----EEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDP  220 (240)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHHHH-----HcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCH
Confidence            99999999999999999999999873     3589999999999999999999999999999876643

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.2e-38  Score=324.76  Aligned_cols=215  Identities=25%  Similarity=0.369  Sum_probs=181.2

Q ss_pred             chhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCC
Q psy7365          47 AYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIR  120 (601)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~  120 (601)
                      .++..++++++.|+.   +..+++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++.
T Consensus         3 ~~~l~~~~l~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGa--GKSTL------l~~i~Gl~~p~~G~i~i~g~~~~   71 (283)
T PRK13636          3 DYILKVEELNYNYSD---GTHALKGININIKKGEVTAILGGNGA--GKSTL------FQNLNGILKPSSGRILFDGKPID   71 (283)
T ss_pred             CceEEEEeEEEEeCC---CCeeeeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCccEEEECCEECC
Confidence            345679999999852   24599999999988      999999  56655      57999999999999999999884


Q ss_pred             C---chHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhh
Q psy7365         121 T---DMTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD  196 (601)
Q Consensus       121 ~---~~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~  196 (601)
                      .   ....+++.+||+||++. .++..||.||+.|+....+.+..+.+.++.++++.+||.+..++++.+||||||||++
T Consensus        72 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~  151 (283)
T PRK13636         72 YSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVA  151 (283)
T ss_pred             CCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHH
Confidence            2   23456778999999984 4456899999998776667777776778999999999999999999999999999998


Q ss_pred             chhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccC
Q psy7365         197 NVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFV  276 (601)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  276 (601)
                      +||||                                      +.+                                  
T Consensus       152 laraL--------------------------------------~~~----------------------------------  159 (283)
T PRK13636        152 IAGVL--------------------------------------VME----------------------------------  159 (283)
T ss_pred             HHHHH--------------------------------------HcC----------------------------------
Confidence            54432                                      233                                  


Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                       |++|||||||+|||+.++..++++|+++.    +..|+|||++||+++++..+|||+++|.+|+++..|+..
T Consensus       160 -p~lLilDEPt~gLD~~~~~~l~~~l~~l~----~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~  227 (283)
T PRK13636        160 -PKVLVLDEPTAGLDPMGVSEIMKLLVEMQ----KELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPK  227 (283)
T ss_pred             -CCEEEEeCCccCCCHHHHHHHHHHHHHHH----HhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence             58999999999999999999999999873    224899999999999999999999999999998877543

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=7.2e-38  Score=321.88  Aligned_cols=212  Identities=24%  Similarity=0.347  Sum_probs=176.4

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT  121 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~  121 (601)
                      .++.+++|++.|++    .++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++..
T Consensus         6 ~~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~i~~   73 (269)
T PRK11831          6 NLVDMRGVSFTRGN----RCIFDNISLTVPRGKITAIMGPSGI--GKTTL------LRLIGGQIAPDHGEILFDGENIPA   73 (269)
T ss_pred             ceEEEeCeEEEECC----EEEEeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCceEEECCEEccc
Confidence            34669999999853    4599999999988      999999  56665      579999999999999999998753


Q ss_pred             c----hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhc-CCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhh
Q psy7365         122 D----MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD  196 (601)
Q Consensus       122 ~----~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~  196 (601)
                      .    ....++.+||+||++.+|+.+||.||+.++.... +.+....+.++.++++.+|+.+..++++.+||||||||++
T Consensus        74 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~  153 (269)
T PRK11831         74 MSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAA  153 (269)
T ss_pred             cChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence            1    1234667999999999999999999998865433 3444445567889999999999999999999999999997


Q ss_pred             chhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccC
Q psy7365         197 NVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFV  276 (601)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  276 (601)
                      +||++                                      +.+                                  
T Consensus       154 laral--------------------------------------~~~----------------------------------  161 (269)
T PRK11831        154 LARAI--------------------------------------ALE----------------------------------  161 (269)
T ss_pred             HHHHH--------------------------------------hcC----------------------------------
Confidence            54432                                      222                                  


Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                       |+++||||||+|||+.++..++++|+++.    +..|+|||++||+++++..+||++++|.+|+++..++.
T Consensus       162 -p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~  228 (269)
T PRK11831        162 -PDLIMFDEPFVGQDPITMGVLVKLISELN----SALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSA  228 (269)
T ss_pred             -CCEEEEcCCCccCCHHHHHHHHHHHHHHH----HhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCH
Confidence             58999999999999999999999999873    23489999999999999999999999999998876643

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=6.5e-38  Score=313.65  Aligned_cols=206  Identities=25%  Similarity=0.350  Sum_probs=171.4

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCC-----CCCeeEEEEccccC
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGML-----PVSSGTAKIYDHDI  119 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~-----~~~~G~v~~~g~~~  119 (601)
                      .++||++.|+.    .++++|+||++.+      +|||||  |||||      .++|+|++     +|++|+|.++|.++
T Consensus         2 ~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~i~G~nGs--GKSTL------l~~i~G~~~~~~~~~~~G~i~~~g~~~   69 (227)
T cd03260           2 ELRDLNVYYGD----KHALKDISLDIPKGEITALIGPSGC--GKSTL------LRLLNRLNDLIPGAPDEGEVLLDGKDI   69 (227)
T ss_pred             EEEEEEEEcCC----ceeeeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHHhhcccccCCCCCeEEEECCEEh
Confidence            37899999864    3599999999988      999999  56665      57999999     99999999999987


Q ss_pred             CCc---hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCCh-HHHHHHHHHHHHHcCCCcccCCc--cccCChHHHh
Q psy7365         120 RTD---MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK-DLAQLEISNMIGDLGIPHKRTSL--ANTLSGGMQR  193 (601)
Q Consensus       120 ~~~---~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgG~~q  193 (601)
                      ...   ....++.+||+||++.+| .+||.||+.++....+... .+.++++.++++.+|+.+..++.  +.+|||||||
T Consensus        70 ~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~q  148 (227)
T cd03260          70 YDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQ  148 (227)
T ss_pred             hhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHH
Confidence            532   334567899999999888 8999999998766555433 23567788999999999876666  5999999999


Q ss_pred             hhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhh
Q psy7365         194 KLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAM  273 (601)
Q Consensus       194 r~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  273 (601)
                      |+++||++                                      +.+                               
T Consensus       149 rv~la~al--------------------------------------~~~-------------------------------  159 (227)
T cd03260         149 RLCLARAL--------------------------------------ANE-------------------------------  159 (227)
T ss_pred             HHHHHHHH--------------------------------------hcC-------------------------------
Confidence            99854432                                      232                               


Q ss_pred             ccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         274 SFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       274 ~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                          |+++||||||+|||+.++..++++|+++.     .+ +|||++||+++++..+||++++|.+|+++..+++
T Consensus       160 ----p~llllDEPt~~LD~~~~~~l~~~l~~~~-----~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~  224 (227)
T cd03260         160 ----PEVLLLDEPTSALDPISTAKIEELIAELK-----KE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPT  224 (227)
T ss_pred             ----CCEEEEeCCCccCCHHHHHHHHHHHHHHh-----hC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCc
Confidence                58999999999999999999999999873     34 8999999999999999999999999998876643

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=7e-38  Score=315.57  Aligned_cols=208  Identities=26%  Similarity=0.446  Sum_probs=174.6

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchH
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMT  124 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~  124 (601)
                      .++++++.|++    ..+++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++.....
T Consensus         3 ~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~G~~~p~~G~i~~~g~~i~~~~~   70 (236)
T TIGR03864         3 EVAGLSFAYGA----RRALDDVSFTVRPGEFVALLGPNGA--GKSTL------FSLLTRLYVAQEGQISVAGHDLRRAPR   70 (236)
T ss_pred             EEEeeEEEECC----EEEEeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCcCCCceEEEECCEEcccCCh
Confidence            47899999853    4599999999988      999999  56665      679999999999999999998754322


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcch
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNN  204 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~  204 (601)
                      ..++.++|+||++.+++.+|+.||+.++....+.+..+...++.++++.+|+.+..++.+.+||||||||+++||+|   
T Consensus        71 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral---  147 (236)
T TIGR03864        71 AALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARAL---  147 (236)
T ss_pred             hhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHH---
Confidence            33457999999999988999999999876665655555667788999999999889999999999999999865432   


Q ss_pred             hhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEe
Q psy7365         205 KAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILD  284 (601)
Q Consensus       205 ~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLD  284 (601)
                                                         +.+                                   |+++|||
T Consensus       148 -----------------------------------~~~-----------------------------------p~llllD  157 (236)
T TIGR03864       148 -----------------------------------LHR-----------------------------------PALLLLD  157 (236)
T ss_pred             -----------------------------------hcC-----------------------------------CCEEEEc
Confidence                                               222                                   5899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         285 EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       285 EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      |||+|||+.+++.+++.|+++.    +..|.|+|++||+++++.. ||++++|.+|+++..++.
T Consensus       158 EP~~~LD~~~~~~l~~~l~~~~----~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~  216 (236)
T TIGR03864       158 EPTVGLDPASRAAIVAHVRALC----RDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAA  216 (236)
T ss_pred             CCccCCCHHHHHHHHHHHHHHH----HhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCH
Confidence            9999999999999999999873    2258999999999999975 999999999998776543

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.8e-38  Score=317.61  Aligned_cols=210  Identities=25%  Similarity=0.365  Sum_probs=172.9

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc--
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD--  122 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~--  122 (601)
                      .+++|++.|+.   +.++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++...  
T Consensus         3 ~~~~l~~~~~~---~~~il~~vs~~i~~Ge~~~l~G~nGs--GKSTL------l~~l~Gl~~~~~G~i~~~g~~~~~~~~   71 (243)
T TIGR02315         3 EVENLSKVYPN---GKQALKNINLNINPGEFVAIIGPSGA--GKSTL------LRCINRLVEPSSGSILLEGTDITKLRG   71 (243)
T ss_pred             EEEeeeeecCC---CcceeecceEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCcCCCccEEEECCEEhhhCCH
Confidence            47899999851   24599999999988      999999  56665      6799999999999999999987531  


Q ss_pred             --hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhh--------cCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHH
Q psy7365         123 --MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL--------KQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQ  192 (601)
Q Consensus       123 --~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~--------~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~  192 (601)
                        ....++.+||+||++.+|+.+||.||+.++...        .+....+.+.++.++++.+|+.+..++++.+||||||
T Consensus        72 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~  151 (243)
T TIGR02315        72 KKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQ  151 (243)
T ss_pred             HHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence              123567899999999999999999999875321        1222234456788999999999889999999999999


Q ss_pred             hhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHh
Q psy7365         193 RKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFA  272 (601)
Q Consensus       193 qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  272 (601)
                      ||+++||+|+                                      .+                              
T Consensus       152 qrv~la~al~--------------------------------------~~------------------------------  163 (243)
T TIGR02315       152 QRVAIARALA--------------------------------------QQ------------------------------  163 (243)
T ss_pred             HHHHHHHHHh--------------------------------------cC------------------------------
Confidence            9998654332                                      22                              


Q ss_pred             hccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         273 MSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       273 ~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                           |+++||||||+|||+.++..++++|+++.    +..|+|+|++||+++++.++||++++|.+|+++..+++
T Consensus       164 -----p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~  230 (243)
T TIGR02315       164 -----PDLILADEPIASLDPKTSKQVMDYLKRIN----KEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAP  230 (243)
T ss_pred             -----CCEEEEeCCcccCCHHHHHHHHHHHHHHH----HHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCH
Confidence                 58999999999999999999999999873    22489999999999999999999999999998876643

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.2e-38  Score=323.67  Aligned_cols=212  Identities=25%  Similarity=0.368  Sum_probs=179.5

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      +..+++|++.|+.  .+.++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|+++|+++...
T Consensus         5 ~l~~~~l~~~~~~--~~~~~l~~vsl~i~~Ge~~~i~G~nGa--GKSTL------l~~i~G~~~p~~G~i~~~g~~i~~~   74 (279)
T PRK13635          5 IIRVEHISFRYPD--AATYALKDVSFSVYEGEWVAIVGHNGS--GKSTL------AKLLNGLLLPEAGTITVGGMVLSEE   74 (279)
T ss_pred             eEEEEEEEEEeCC--CCccceeeeEEEEcCCCEEEEECCCCC--cHHHH------HHHHhcCCCCCCcEEEECCEECCcC
Confidence            4569999999853  235699999999988      999999  56655      5799999999999999999998642


Q ss_pred             -hHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh
Q psy7365         123 -MTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       123 -~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                       ...+++.+||+||++. +|+..||.||+.|+....+.+..+.++++.++++.+||.+..++++.+||||||||+++||+
T Consensus        75 ~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~lara  154 (279)
T PRK13635         75 TVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGV  154 (279)
T ss_pred             cHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHH
Confidence             3445678999999984 77789999999988776666766777789999999999999999999999999999986543


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      +                                      +.+                                   |++
T Consensus       155 l--------------------------------------~~~-----------------------------------p~l  161 (279)
T PRK13635        155 L--------------------------------------ALQ-----------------------------------PDI  161 (279)
T ss_pred             H--------------------------------------HcC-----------------------------------CCE
Confidence            2                                      232                                   589


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      +||||||+|||+.++..++++|+++.    +..|.|||++||+++++. .||+++++.+|+++..++.
T Consensus       162 llLDEPt~gLD~~~~~~l~~~l~~l~----~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~  224 (279)
T PRK13635        162 IILDEATSMLDPRGRREVLETVRQLK----EQKGITVLSITHDLDEAA-QADRVIVMNKGEILEEGTP  224 (279)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHH----HcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCH
Confidence            99999999999999999999999883    234899999999999987 5999999999998877653

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.6e-38  Score=329.53  Aligned_cols=217  Identities=15%  Similarity=0.205  Sum_probs=180.9

Q ss_pred             hhhhhcccccccccCCC------ccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEc
Q psy7365          48 YVSLFESLSENRDKLGI------DSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIY  115 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~  115 (601)
                      .+..++||++.|+...+      ...+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++
T Consensus         4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGs--GKSTL------l~~l~gl~~p~~G~i~~~   75 (327)
T PRK11308          4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGC--GKSTL------ARLLTMIETPTGGELYYQ   75 (327)
T ss_pred             ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCC--cHHHH------HHHHHcCCCCCCcEEEEC
Confidence            35569999999964222      35799999999988      999999  56655      469999999999999999


Q ss_pred             cccCCCc----hHHhcccEEEEccCC--CCCCCCCHHHHHHHhHhhc-CCChHHHHHHHHHHHHHcCCC-cccCCccccC
Q psy7365         116 DHDIRTD----MTTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIGDLGIP-HKRTSLANTL  187 (601)
Q Consensus       116 g~~~~~~----~~~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~L  187 (601)
                      |.++...    ...+++.+|||||+|  .+++.+|+.+++.+..... +..+.+.+.++.++++.+||. ...++++++|
T Consensus        76 g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~L  155 (327)
T PRK11308         76 GQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMF  155 (327)
T ss_pred             CEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccC
Confidence            9998542    234567899999998  5889999999998765543 456666778899999999997 4679999999


Q ss_pred             ChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHH
Q psy7365         188 SGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAV  267 (601)
Q Consensus       188 SgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~  267 (601)
                      |||||||++||+|                                      ++.+                         
T Consensus       156 SgGq~QRv~iArA--------------------------------------L~~~-------------------------  172 (327)
T PRK11308        156 SGGQRQRIAIARA--------------------------------------LMLD-------------------------  172 (327)
T ss_pred             CHHHHHHHHHHHH--------------------------------------HHcC-------------------------
Confidence            9999999975443                                      2233                         


Q ss_pred             HHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         268 TVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       268 ~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                                |++||+||||++||+..+..++++|+++.    +..|.|+|++|||++++..+||++++|.+|+++..|+
T Consensus       173 ----------P~lLilDEPts~LD~~~~~~i~~lL~~l~----~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~  238 (327)
T PRK11308        173 ----------PDVVVADEPVSALDVSVQAQVLNLMMDLQ----QELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGT  238 (327)
T ss_pred             ----------CCEEEEECCCccCCHHHHHHHHHHHHHHH----HHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence                      58999999999999999999999999984    2358999999999999999999999999999998876


Q ss_pred             cc
Q psy7365         348 SV  349 (601)
Q Consensus       348 ~~  349 (601)
                      ..
T Consensus       239 ~~  240 (327)
T PRK11308        239 KE  240 (327)
T ss_pred             HH
Confidence            43

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=1.3e-37  Score=311.71  Aligned_cols=210  Identities=22%  Similarity=0.287  Sum_probs=172.8

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      +..+++|++.|+.......+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++...
T Consensus         6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGs--GKSTL------l~~i~Gl~~p~~G~i~~~g~~~~~~   77 (228)
T PRK10584          6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGS--GKSTL------LAILAGLDDGSSGEVSLVGQPLHQM   77 (228)
T ss_pred             eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCC--CHHHH------HHHHHcCCCCCCeeEEECCEEcccC
Confidence            456999999986422223599999999988      999999  56665      6799999999999999999987542


Q ss_pred             -hH---Hh-cccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhc
Q psy7365         123 -MT---TI-RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDN  197 (601)
Q Consensus       123 -~~---~~-~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~  197 (601)
                       ..   .. ++.+||+||++.+|+.+|+.||+.+.....+.+..+.++++.++++.+|+.+..++++.+||||||||+++
T Consensus        78 ~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~l  157 (228)
T PRK10584         78 DEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVAL  157 (228)
T ss_pred             CHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHH
Confidence             11   12 35799999999999999999999886554455555566788999999999988999999999999999986


Q ss_pred             hhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCC
Q psy7365         198 VKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVP  277 (601)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  277 (601)
                      ||+|+                                      .                                   +
T Consensus       158 a~al~--------------------------------------~-----------------------------------~  164 (228)
T PRK10584        158 ARAFN--------------------------------------G-----------------------------------R  164 (228)
T ss_pred             HHHHh--------------------------------------c-----------------------------------C
Confidence            54332                                      2                                   2


Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccc
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQC  344 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~  344 (601)
                      |+++||||||+|||+.++..+++.|+++.    +..|.|||++||++++.. .||++++|.+|+++.
T Consensus       165 p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~~~tii~~sH~~~~~~-~~d~i~~l~~g~i~~  226 (228)
T PRK10584        165 PDVLFADEPTGNLDRQTGDKIADLLFSLN----REHGTTLILVTHDLQLAA-RCDRRLRLVNGQLQE  226 (228)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHH----HhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEe
Confidence            58999999999999999999999999873    224889999999999885 499999999998753

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=1.5e-37  Score=315.39  Aligned_cols=209  Identities=26%  Similarity=0.358  Sum_probs=175.2

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      +..+++|++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++...
T Consensus         3 ~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~g~~~~~~   70 (250)
T PRK11264          3 AIEVKNLVKKFHG----QTVLHGIDLEVKPGEVVAIIGPSGS--GKTTL------LRCINLLEQPEAGTIRVGDITIDTA   70 (250)
T ss_pred             cEEEeceEEEECC----eeeeccceEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCeEEEECCEEcccc
Confidence            3558999999863    3599999999988      999999  56665      5799999999999999999987421


Q ss_pred             ---------hHHhcccEEEEccCCCCCCCCCHHHHHHHhHh-hcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHH
Q psy7365         123 ---------MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ-LKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQ  192 (601)
Q Consensus       123 ---------~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~  192 (601)
                               ....++.+||+||++.+|+.+|+.||+.++.. ..+.+..+...++.++++.+|+....++++.+||||||
T Consensus        71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~  150 (250)
T PRK11264         71 RSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQ  150 (250)
T ss_pred             ccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHH
Confidence                     23456789999999999999999999988543 23444455566788999999999888999999999999


Q ss_pred             hhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHh
Q psy7365         193 RKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFA  272 (601)
Q Consensus       193 qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  272 (601)
                      ||+++||+|                                      +.+                              
T Consensus       151 qrv~la~al--------------------------------------~~~------------------------------  162 (250)
T PRK11264        151 QRVAIARAL--------------------------------------AMR------------------------------  162 (250)
T ss_pred             HHHHHHHHH--------------------------------------hcC------------------------------
Confidence            999854432                                      233                              


Q ss_pred             hccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         273 MSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       273 ~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                           |++|||||||+|||+.++..+++.|.++.     .+|.|||++||+++++..+||++++|.+|+++..++
T Consensus       163 -----p~lllLDEPt~~LD~~~~~~l~~~l~~~~-----~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~  227 (250)
T PRK11264        163 -----PEVILFDEPTSALDPELVGEVLNTIRQLA-----QEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGP  227 (250)
T ss_pred             -----CCEEEEeCCCccCCHHHHHHHHHHHHHHH-----hcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence                 58999999999999999999999999873     358999999999999999999999999999877654

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=9.8e-38  Score=310.97  Aligned_cols=205  Identities=27%  Similarity=0.399  Sum_probs=170.9

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc-h
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD-M  123 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~-~  123 (601)
                      .+++|++.|+.    .++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++... .
T Consensus         2 ~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~~~~G~i~~~g~~~~~~~~   69 (222)
T cd03224           2 EVENLNAGYGK----SQILFGVSLTVPEGEIVALLGRNGA--GKTTL------LKTIMGLLPPRSGSIRFDGRDITGLPP   69 (222)
T ss_pred             EEeeEEeecCC----eeEeeeeeEEEcCCeEEEEECCCCC--CHHHH------HHHHhCCCCCCCceEEECCEEcCCCCH
Confidence            37899998853    3599999999988      999999  56655      5799999999999999999987542 2


Q ss_pred             HH-hcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHc-CCCcccCCccccCChHHHhhhhchhhh
Q psy7365         124 TT-IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDL-GIPHKRTSLANTLSGGMQRKLDNVKVW  201 (601)
Q Consensus       124 ~~-~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~LSgG~~qr~~~~~~~  201 (601)
                      .. .++.+||+||++.+|+.+|+.||+.++....+  ..+...++.++++.+ ++.+..++++.+||||||||+++||+|
T Consensus        70 ~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral  147 (222)
T cd03224          70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARAL  147 (222)
T ss_pred             HHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHH
Confidence            22 35679999999999999999999998765543  233455677888988 588888999999999999999865432


Q ss_pred             cchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEE
Q psy7365         202 FNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTV  281 (601)
Q Consensus       202 ~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~l  281 (601)
                      +                                      .+                                   |+++
T Consensus       148 ~--------------------------------------~~-----------------------------------p~ll  154 (222)
T cd03224         148 M--------------------------------------SR-----------------------------------PKLL  154 (222)
T ss_pred             h--------------------------------------cC-----------------------------------CCEE
Confidence            2                                      22                                   5899


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       282 iLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                      ||||||+|||+.++..++++|+++.     ..|+|+|++||+++++..+||++++|.+|++...+.
T Consensus       155 llDEPt~~LD~~~~~~l~~~l~~~~-----~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~  215 (222)
T cd03224         155 LLDEPSEGLAPKIVEEIFEAIRELR-----DEGVTILLVEQNARFALEIADRAYVLERGRVVLEGT  215 (222)
T ss_pred             EECCCcccCCHHHHHHHHHHHHHHH-----HCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCC
Confidence            9999999999999999999999873     258999999999999999999999999999876553

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=1.4e-37  Score=310.83  Aligned_cols=210  Identities=24%  Similarity=0.305  Sum_probs=169.1

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch-
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM-  123 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~-  123 (601)
                      .+++|++.|++.....++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.... 
T Consensus         3 ~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~g~~~~~~~~   74 (228)
T cd03257           3 EVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGS--GKSTL------ARAILGLLKPTSGSIIFDGKDLLKLSR   74 (228)
T ss_pred             EEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCceEEECCEEccccch
Confidence            4789999986432123699999999988      999999  56665      67999999999999999999885422 


Q ss_pred             ---HHhcccEEEEccCC--CCCCCCCHHHHHHHhHhhcCCCh-HHHHHH-HHHHHHHcCCC-cccCCccccCChHHHhhh
Q psy7365         124 ---TTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQVPK-DLAQLE-ISNMIGDLGIP-HKRTSLANTLSGGMQRKL  195 (601)
Q Consensus       124 ---~~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~~~~~~~~~-~~~~~~-~~~~l~~~gl~-~~~~~~~~~LSgG~~qr~  195 (601)
                         ...++.+||+||++  .+++.+||+||+.+.....+... .....+ +.++++.+|+. ...++.+.+||||||||+
T Consensus        75 ~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv  154 (228)
T cd03257          75 RLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRV  154 (228)
T ss_pred             hhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHH
Confidence               34567899999998  46778999999988765544322 222233 35889999995 678999999999999999


Q ss_pred             hchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhcc
Q psy7365         196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSF  275 (601)
Q Consensus       196 ~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  275 (601)
                      ++||+|+                                      .+                                 
T Consensus       155 ~laral~--------------------------------------~~---------------------------------  163 (228)
T cd03257         155 AIARALA--------------------------------------LN---------------------------------  163 (228)
T ss_pred             HHHHHHh--------------------------------------cC---------------------------------
Confidence            8654332                                      22                                 


Q ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc
Q psy7365         276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  345 (601)
Q Consensus       276 ~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~  345 (601)
                        |+++||||||+|||+.+++.+++.|+++.    +..|+|||++||+++++..+||++++|.+|+++..
T Consensus       164 --p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~  227 (228)
T cd03257         164 --PKLLIADEPTSALDVSVQAQILDLLKKLQ----EELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEE  227 (228)
T ss_pred             --CCEEEecCCCCCCCHHHHHHHHHHHHHHH----HHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEec
Confidence              58999999999999999999999999873    22389999999999999999999999999997643

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-37  Score=317.69  Aligned_cols=203  Identities=23%  Similarity=0.383  Sum_probs=172.3

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchH
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMT  124 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~  124 (601)
                      .+++|++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++...  
T Consensus         3 ~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~~~~~--   68 (255)
T PRK11248          3 QISHLYADYGG----KPALEDINLTLESGELLVVLGPSGC--GKTTL------LNLIAGFVPYQHGSITLDGKPVEGP--   68 (255)
T ss_pred             EEEEEEEEeCC----eeeEeeeeEEECCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCcEEEECCEECCCC--
Confidence            47899999864    4599999999988      999999  56665      6799999999999999999987532  


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcch
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNN  204 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~  204 (601)
                        +..+||+||++.+|+.+||.||+.++....+.+..+...++.++++.+|+.+..++++.+||||||||+++||+|   
T Consensus        69 --~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral---  143 (255)
T PRK11248         69 --GAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARAL---  143 (255)
T ss_pred             --CCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHH---
Confidence              345899999999999999999999876655666555667889999999999888999999999999999754432   


Q ss_pred             hhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEe
Q psy7365         205 KAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILD  284 (601)
Q Consensus       205 ~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLD  284 (601)
                                                         +.+                                   |+++|||
T Consensus       144 -----------------------------------~~~-----------------------------------p~lllLD  153 (255)
T PRK11248        144 -----------------------------------AAN-----------------------------------PQLLLLD  153 (255)
T ss_pred             -----------------------------------hcC-----------------------------------CCEEEEe
Confidence                                               222                                   5899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEec--CCcccccc
Q psy7365         285 EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA--AGKLQCCG  346 (601)
Q Consensus       285 EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~--~GkIv~~G  346 (601)
                      |||+|||+.++..++++|++++    +..|+|||++||+++++..+||++++|.  +|+++...
T Consensus       154 EPt~~LD~~~~~~l~~~L~~~~----~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~  213 (255)
T PRK11248        154 EPFGALDAFTREQMQTLLLKLW----QETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERL  213 (255)
T ss_pred             CCCccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEe
Confidence            9999999999999999999873    2348999999999999999999999998  58876544

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=1.4e-36  Score=317.50  Aligned_cols=278  Identities=25%  Similarity=0.403  Sum_probs=207.2

Q ss_pred             CcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc--ccccccccCCCCcccC
Q psy7365         314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA--PQKSYIGYCPQFDALN  384 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~--~~~~~ig~v~Q~~~l~  384 (601)
                      ++.++   +++++...-++.+++++...   .|++++++       +..|..++.+.+....  ..++.+||+||++.++
T Consensus         5 ~~~~l---~~vs~~i~~Ge~~~l~G~NG---aGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~   78 (302)
T TIGR01188         5 DFKAV---DGVNFKVREGEVFGFLGPNG---AGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVD   78 (302)
T ss_pred             CeeEE---eeeeEEEcCCcEEEEECCCC---CCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCC
Confidence            34554   89999999999999997522   45555432       3344444444443221  2356799999999999


Q ss_pred             CCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHH
Q psy7365         385 DRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG  464 (601)
Q Consensus       385 ~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~  464 (601)
                      +.+|++||+.++..+++.+..+..++++++++.++|.+..++++.+|||||||||+||+||+++|++|||||||+||||.
T Consensus        79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~  158 (302)
T TIGR01188        79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPR  158 (302)
T ss_pred             CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence            99999999999887777665556677899999999998899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHhCCceEEEEEecCCC-chhHHHHH
Q psy7365         465 ARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGR-SADAQTYL  543 (601)
Q Consensus       465 ~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~~~~~~l~i~~~~~~-~~~~~~~l  543 (601)
                      +++.++++|++++++|+|||++||++++++.+|||+++|++|++++.|+++++.+.+... .+.+...... .......+
T Consensus       159 ~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~  237 (302)
T TIGR01188       159 TRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKD-TLESRPRDIQSLKVEVSML  237 (302)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHhcCCc-eEEEEecCchhhhhhhhHH
Confidence            999999999999878999999999999999999999999999999999999998876543 3344432211 01000111


Q ss_pred             ----hhcCCCceeEEeeCcEEEEEEcCCcccHHHHHHHHHHccccCCCeeEEEecCCCCCCC
Q psy7365         544 ----SLNLPVADLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLEDS  601 (601)
Q Consensus       544 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~i~~~~v~~~sLEdv  601 (601)
                          ....++.......++.+.+.++......+.++..+.+.+  .. +.++++.++||||+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~-i~~~~~~~~~Le~~  296 (302)
T TIGR01188       238 IAELGETGLGLLAVTVDSDRIKILVPDGDETVPEIVEAAIRNG--IR-IRSISTERPSLDDV  296 (302)
T ss_pred             HhhhhhccccceeeeecCCeEEEEEcCchhHHHHHHHHHHHCC--Cc-eEEEEcCCCCHHHH
Confidence                011112222222334455555432234567777776543  45 88999999999985

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.6e-37  Score=327.69  Aligned_cols=216  Identities=19%  Similarity=0.243  Sum_probs=178.6

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCC----CCeeEEEEcccc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLP----VSSGTAKIYDHD  118 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~----~~~G~v~~~g~~  118 (601)
                      +..+++|++.|+......++|+|+||++.+      +|||||  |||||      .++|+|+++    |++|+|.++|.+
T Consensus         3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGs--GKSTL------~~~l~Gll~~~~~~~~G~i~~~G~~   74 (326)
T PRK11022          3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGS--GKSVS------SLAIMGLIDYPGRVMAEKLEFNGQD   74 (326)
T ss_pred             eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCC--hHHHH------HHHHHcCCCCCCCCcceEEEECCEE
Confidence            345899999997655456799999999988      999999  56654      469999998    489999999999


Q ss_pred             CCCc-hH---H-hcccEEEEccCC--CCCCCCCHHHHHHHhHhhc-CCChHHHHHHHHHHHHHcCCCc---ccCCccccC
Q psy7365         119 IRTD-MT---T-IRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIGDLGIPH---KRTSLANTL  187 (601)
Q Consensus       119 ~~~~-~~---~-~~~~ig~v~Q~~--~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~---~~~~~~~~L  187 (601)
                      +... ..   . .++.+|||||+|  .+++.+|+.+++....... +.++.+.++++.++++.+||.+   ..++++++|
T Consensus        75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~L  154 (326)
T PRK11022         75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQL  154 (326)
T ss_pred             CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhC
Confidence            8542 11   2 234799999998  4889999999988766543 4566667788999999999974   468999999


Q ss_pred             ChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHH
Q psy7365         188 SGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAV  267 (601)
Q Consensus       188 SgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~  267 (601)
                      |||||||++||+|                                      ++.+                         
T Consensus       155 SgGq~QRv~iArA--------------------------------------L~~~-------------------------  171 (326)
T PRK11022        155 SGGMSQRVMIAMA--------------------------------------IACR-------------------------  171 (326)
T ss_pred             CHHHHHHHHHHHH--------------------------------------HHhC-------------------------
Confidence            9999999975443                                      2233                         


Q ss_pred             HHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         268 TVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       268 ~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                                |++||+||||++||+.++..++++|++++    +..|.|+|++|||++++..+||||++|.+|+++..|+
T Consensus       172 ----------P~llilDEPts~LD~~~~~~il~lL~~l~----~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~  237 (326)
T PRK11022        172 ----------PKLLIADEPTTALDVTIQAQIIELLLELQ----QKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGK  237 (326)
T ss_pred             ----------CCEEEEeCCCCCCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence                      58999999999999999999999999984    2358999999999999999999999999999998876


Q ss_pred             cc
Q psy7365         348 SV  349 (601)
Q Consensus       348 ~~  349 (601)
                      ..
T Consensus       238 ~~  239 (326)
T PRK11022        238 AH  239 (326)
T ss_pred             HH
Confidence            53

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-37  Score=320.03  Aligned_cols=208  Identities=25%  Similarity=0.332  Sum_probs=176.6

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc--
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD--  122 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~--  122 (601)
                      .+++|++.|+.   +.++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++...  
T Consensus         3 ~~~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~~~~~~~   71 (274)
T PRK13644          3 RLENVSYSYPD---GTPALENINLVIKKGEYIGIIGKNGS--GKSTL------ALHLNGLLRPQKGKVLVSGIDTGDFSK   71 (274)
T ss_pred             EEEEEEEEcCC---CCceeeeeEEEEeCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCceEEECCEECCcccc
Confidence            47899999842   24599999999988      999999  56665      6799999999999999999988542  


Q ss_pred             hHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhh
Q psy7365         123 MTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVW  201 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~  201 (601)
                      ....++.+||+||+|. .|+..|+.||+.|+....+.++.+..+++.++++.+||.+..++++.+||||||||+++|+||
T Consensus        72 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral  151 (274)
T PRK13644         72 LQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGIL  151 (274)
T ss_pred             HHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHH
Confidence            3455678999999986 477789999999887666677777777889999999999999999999999999999865433


Q ss_pred             cchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEE
Q psy7365         202 FNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTV  281 (601)
Q Consensus       202 ~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~l  281 (601)
                                                            +.+                                   |+++
T Consensus       152 --------------------------------------~~~-----------------------------------p~ll  158 (274)
T PRK13644        152 --------------------------------------TME-----------------------------------PECL  158 (274)
T ss_pred             --------------------------------------HcC-----------------------------------CCEE
Confidence                                                  233                                   5899


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       282 iLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      ||||||+|||+.++..+++.|+++.     .+|.|||++||+++++. .||++++|.+|+++..+++
T Consensus       159 lLDEPt~gLD~~~~~~l~~~l~~l~-----~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~  219 (274)
T PRK13644        159 IFDEVTSMLDPDSGIAVLERIKKLH-----EKGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEP  219 (274)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHH-----hCCCEEEEEecCHHHHh-hCCEEEEEECCEEEEECCH
Confidence            9999999999999999999999873     35899999999999985 6999999999999877653

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.5e-37  Score=313.55  Aligned_cols=206  Identities=25%  Similarity=0.345  Sum_probs=173.6

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCC-----eeEEEEccccC
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVS-----SGTAKIYDHDI  119 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~-----~G~v~~~g~~~  119 (601)
                      .+++|++.|+.    ..+++|+||++.+      +|||||  |||||      .++|+|+++|+     +|+|.++|.++
T Consensus         3 ~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~G~~~p~~~~~~~G~i~~~g~~~   70 (247)
T TIGR00972         3 EIENLNLFYGE----KEALKNINLDIPKNQVTALIGPSGC--GKSTL------LRSLNRMNDLVPGVRIEGKVLFDGQDI   70 (247)
T ss_pred             EEEEEEEEECC----eeeecceeEEECCCCEEEEECCCCC--CHHHH------HHHHhccCCCCcCCCCceEEEECCEEc
Confidence            47899999864    3599999999988      999999  56665      67999999998     99999999987


Q ss_pred             CC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcC-CChHHHHHHHHHHHHHcCCC----cccCCccccCChHH
Q psy7365         120 RT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ-VPKDLAQLEISNMIGDLGIP----HKRTSLANTLSGGM  191 (601)
Q Consensus       120 ~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgG~  191 (601)
                      ..   .....++.+||+||++.+|+ .|+.||+.+.....+ .+..+...++.++++.+|+.    +..++++.+|||||
T Consensus        71 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~  149 (247)
T TIGR00972        71 YDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQ  149 (247)
T ss_pred             cccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHH
Confidence            53   23345678999999999988 999999998765555 24455567788999999998    77899999999999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||+++||+|                                      +.+                             
T Consensus       150 ~qrv~laral--------------------------------------~~~-----------------------------  162 (247)
T TIGR00972       150 QQRLCIARAL--------------------------------------AVE-----------------------------  162 (247)
T ss_pred             HHHHHHHHHH--------------------------------------hcC-----------------------------
Confidence            9999765432                                      222                             


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                            |+++||||||+|||+.++..++++|+++.     . ++|+|++||+++++..+||++++|.+|+++..+.+
T Consensus       163 ------p~llllDEPt~~LD~~~~~~l~~~l~~~~-----~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~  227 (247)
T TIGR00972       163 ------PEVLLLDEPTSALDPIATGKIEELIQELK-----K-KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPT  227 (247)
T ss_pred             ------CCEEEEeCCcccCCHHHHHHHHHHHHHHH-----h-cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence                  58999999999999999999999999873     2 48999999999999999999999999998876643

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=1.5e-37  Score=308.04  Aligned_cols=196  Identities=23%  Similarity=0.397  Sum_probs=163.0

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTT  125 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~  125 (601)
                      +++|++.|++    .++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.    .
T Consensus         2 ~~~l~~~~~~----~~~l~~isl~i~~Ge~~~l~G~nGs--GKSTL------l~~l~G~~~p~~G~i~~~g~~~~----~   65 (213)
T cd03235           2 VEDLTVSYGG----HPVLEDVSFEVKPGEFLAIVGPNGA--GKSTL------LKAILGLLKPTSGSIRVFGKPLE----K   65 (213)
T ss_pred             cccceeEECC----EEeeecceeEEcCCCEEEEECCCCC--CHHHH------HHHHcCCCCCCCCEEEECCccHH----H
Confidence            6789999864    3599999999988      999999  56665      57999999999999999998763    3


Q ss_pred             hcccEEEEccCCCCC--CCCCHHHHHHHhHhhcC----CChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365         126 IRRSLGVCPQYNALF--DKLTVEEHMWFYSQLKQ----VPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK  199 (601)
Q Consensus       126 ~~~~ig~v~Q~~~~~--~~~tv~e~l~~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~  199 (601)
                      .++.+||+||++.++  +.+||.||+.++.....    .......+++.++++.+|+.+..++++.+||||||||+++||
T Consensus        66 ~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~  145 (213)
T cd03235          66 ERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLAR  145 (213)
T ss_pred             HHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHH
Confidence            466899999998763  34899999988654221    223344567889999999998899999999999999998644


Q ss_pred             hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365         200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS  279 (601)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  279 (601)
                      ||                                      +.+                                   |+
T Consensus       146 al--------------------------------------~~~-----------------------------------p~  152 (213)
T cd03235         146 AL--------------------------------------VQD-----------------------------------PD  152 (213)
T ss_pred             HH--------------------------------------HcC-----------------------------------CC
Confidence            32                                      222                                   58


Q ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCc
Q psy7365         280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK  341 (601)
Q Consensus       280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~Gk  341 (601)
                      ++||||||+|||+.++..+++.|+++.     .+|.|+|++||+++++..+||++++|.+|.
T Consensus       153 llllDEPt~~LD~~~~~~l~~~l~~~~-----~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~  209 (213)
T cd03235         153 LLLLDEPFAGVDPKTQEDIYELLRELR-----REGMTILVVTHDLGLVLEYFDRVLLLNRTV  209 (213)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHH-----hcCCEEEEEeCCHHHHHHhcCEEEEEcCcE
Confidence            999999999999999999999999873     258999999999999999999999998763

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.3e-37  Score=318.37  Aligned_cols=208  Identities=19%  Similarity=0.272  Sum_probs=175.0

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC---
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT---  121 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~---  121 (601)
                      .++||++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++..   
T Consensus         3 ~~~~l~~~~~~----~~il~~isl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~i~~~~~   70 (271)
T PRK13638          3 ATSDLWFRYQD----EPVLKGLNLDFSLSPVTGLVGANGC--GKSTL------FMNLSGLLRPQKGAVLWQGKPLDYSKR   70 (271)
T ss_pred             EEEEEEEEcCC----cccccceEEEEcCCCEEEEECCCCC--CHHHH------HHHHcCCCCCCccEEEECCEEcccccC
Confidence            47899999863    3599999999988      999999  56665      579999999999999999998742   


Q ss_pred             chHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh
Q psy7365         122 DMTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       122 ~~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                      .....++.+||+||++. .++..++.+|+.++....+.+..+...++.++++.+|+.+..++++.+||||||||+++||+
T Consensus        71 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~lara  150 (271)
T PRK13638         71 GLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGA  150 (271)
T ss_pred             CHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHH
Confidence            22345678999999986 34567899999987666666666666778899999999998999999999999999986543


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      |                                      +.+                                   |++
T Consensus       151 L--------------------------------------~~~-----------------------------------p~l  157 (271)
T PRK13638        151 L--------------------------------------VLQ-----------------------------------ARY  157 (271)
T ss_pred             H--------------------------------------HcC-----------------------------------CCE
Confidence            3                                      222                                   589


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      +||||||+|||+.++..++++|+++.     .+|.|||++||+++++..+||++++|.+|+++..+++
T Consensus       158 llLDEPt~~LD~~~~~~l~~~l~~~~-----~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~  220 (271)
T PRK13638        158 LLLDEPTAGLDPAGRTQMIAIIRRIV-----AQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAP  220 (271)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHH-----HCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence            99999999999999999999999873     3489999999999999999999999999999877654

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.8e-37  Score=318.93  Aligned_cols=212  Identities=23%  Similarity=0.352  Sum_probs=179.0

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      ..+++|++.|+.   ..++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|+++|.++.. .
T Consensus         4 l~~~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~NGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~~~~~~   72 (277)
T PRK13652          4 IETRDLCYSYSG---SKEALNNINFIAPRNSRIAVIGPNGA--GKSTL------FRHFNGILKPTSGSVLIRGEPITKEN   72 (277)
T ss_pred             EEEEEEEEEeCC---CCceeeEeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCceEEEECCEECCcCC
Confidence            458999999842   23599999999988      999999  56655      579999999999999999998754 3


Q ss_pred             hHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhh
Q psy7365         123 MTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVW  201 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~  201 (601)
                      ....++.+||+||++. .++..||.||+.++....+.+++...+++.++++.+||.+..++.+.+||||||||+++||||
T Consensus        73 ~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL  152 (277)
T PRK13652         73 IREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVI  152 (277)
T ss_pred             HHHHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence            3456778999999984 445789999999877666677777777889999999999999999999999999999754432


Q ss_pred             cchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEE
Q psy7365         202 FNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTV  281 (601)
Q Consensus       202 ~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~l  281 (601)
                                                            +.+                                   |+++
T Consensus       153 --------------------------------------~~~-----------------------------------p~ll  159 (277)
T PRK13652        153 --------------------------------------AME-----------------------------------PQVL  159 (277)
T ss_pred             --------------------------------------HcC-----------------------------------CCEE
Confidence                                                  233                                   5899


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       282 iLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                      ||||||+|||+.++..++++|+++.    +..|.|||++||+++++.+.|||+++|.+|+++..+++.
T Consensus       160 ilDEPt~gLD~~~~~~l~~~l~~l~----~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~  223 (277)
T PRK13652        160 VLDEPTAGLDPQGVKELIDFLNDLP----ETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVE  223 (277)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHH
Confidence            9999999999999999999999884    224899999999999999999999999999998877543

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-37  Score=312.96  Aligned_cols=209  Identities=27%  Similarity=0.450  Sum_probs=175.6

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc-
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD-  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~-  122 (601)
                      ..+++|++.|+.    .++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|+++|.++... 
T Consensus         4 l~~~~l~~~~~~----~~~l~~~sl~i~~Ge~~~l~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~g~~~~~~~   71 (241)
T PRK10895          4 LTAKNLAKAYKG----RRVVEDVSLTVNSGEIVGLLGPNGA--GKTTT------FYMVVGIVPRDAGNIIIDDEDISLLP   71 (241)
T ss_pred             EEEeCcEEEeCC----EEEEeeeeEEEcCCcEEEEECCCCC--CHHHH------HHHHhCCCCCCCcEEEECCEECCCCC
Confidence            458999999853    4699999999988      999999  56665      6799999999999999999987542 


Q ss_pred             h-HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhc-CCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh
Q psy7365         123 M-TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       123 ~-~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                      . ...++.+||+||++.+|+.+||.||+.++.... +.++.+.+.++.++++.+|+.+..++++.+||||||||+++||+
T Consensus        72 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara  151 (241)
T PRK10895         72 LHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARA  151 (241)
T ss_pred             HHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHH
Confidence            2 234678999999999999999999998865433 24444556678899999999988899999999999999986443


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      |                                      +.+                                   |++
T Consensus       152 l--------------------------------------~~~-----------------------------------p~l  158 (241)
T PRK10895        152 L--------------------------------------AAN-----------------------------------PKF  158 (241)
T ss_pred             H--------------------------------------hcC-----------------------------------CCE
Confidence            2                                      222                                   589


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      +||||||+|||+.++..+++++.++.     ..|+|+|++||+++++..+||++++|.+|+++..++.
T Consensus       159 lllDEPt~~LD~~~~~~l~~~l~~~~-----~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~  221 (241)
T PRK10895        159 ILLDEPFAGVDPISVIDIKRIIEHLR-----DSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTP  221 (241)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHHHH-----hcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCH
Confidence            99999999999999999999998873     3589999999999999999999999999998876643

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.4e-37  Score=319.80  Aligned_cols=213  Identities=25%  Similarity=0.366  Sum_probs=178.9

Q ss_pred             hhhcccccccccCC--CccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC
Q psy7365          50 SLFESLSENRDKLG--IDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT  121 (601)
Q Consensus        50 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~  121 (601)
                      ..+++|++.|+...  ....+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|+++|.++..
T Consensus         5 l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGs--GKSTL------l~~l~Gl~~~~~G~i~i~g~~i~~   76 (280)
T PRK13633          5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGS--GKSTI------AKHMNALLIPSEGKVYVDGLDTSD   76 (280)
T ss_pred             EEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCceEEECCEeccc
Confidence            45899999986432  135699999999988      999999  56665      579999999999999999998854


Q ss_pred             c--hHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhch
Q psy7365         122 D--MTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNV  198 (601)
Q Consensus       122 ~--~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~  198 (601)
                      .  ....++.+||+||+|. .+...||.+|+.|+....+.++.+.++++.++++.+||.+..++++.+||||||||+++|
T Consensus        77 ~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~la  156 (280)
T PRK13633         77 EENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIA  156 (280)
T ss_pred             cccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHH
Confidence            2  3446778999999985 344579999999987777777777778899999999999999999999999999999865


Q ss_pred             hhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCC
Q psy7365         199 KVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPA  278 (601)
Q Consensus       199 ~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  278 (601)
                      ++|                                      +.+                                   |
T Consensus       157 ral--------------------------------------~~~-----------------------------------p  163 (280)
T PRK13633        157 GIL--------------------------------------AMR-----------------------------------P  163 (280)
T ss_pred             HHH--------------------------------------HcC-----------------------------------C
Confidence            432                                      233                                   5


Q ss_pred             cEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       279 ~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      +++||||||+|||+.++..+++.|+++.    +..|.|||++||+++++.. ||++++|.+|+++..+++
T Consensus       164 ~llllDEPt~gLD~~~~~~l~~~l~~l~----~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~  228 (280)
T PRK13633        164 ECIIFDEPTAMLDPSGRREVVNTIKELN----KKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTP  228 (280)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCH
Confidence            8999999999999999999999999883    2248999999999999976 999999999999877654

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=3.8e-37  Score=314.23  Aligned_cols=208  Identities=21%  Similarity=0.305  Sum_probs=175.0

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC--
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT--  121 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~--  121 (601)
                      ..+++|++.|+.    ..+++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++..  
T Consensus         6 l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~nGs--GKSTL------l~~i~G~~~~~~G~i~~~g~~~~~~~   73 (257)
T PRK10619          6 LNVIDLHKRYGE----HEVLKGVSLQANAGDVISIIGSSGS--GKSTF------LRCINFLEKPSEGSIVVNGQTINLVR   73 (257)
T ss_pred             EEEeeeEEEECC----EEEEeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCeEEEECCEEccccc
Confidence            458999999863    4599999999988      999999  56665      579999999999999999988742  


Q ss_pred             ------------chHHhcccEEEEccCCCCCCCCCHHHHHHHhH-hhcCCChHHHHHHHHHHHHHcCCCcc-cCCccccC
Q psy7365         122 ------------DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYS-QLKQVPKDLAQLEISNMIGDLGIPHK-RTSLANTL  187 (601)
Q Consensus       122 ------------~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~L  187 (601)
                                  .....++++||+||++.+|+.+|++||+.++. ...+....+.+.++.++++.+|+.+. .++++.+|
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L  153 (257)
T PRK10619         74 DKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHL  153 (257)
T ss_pred             ccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccC
Confidence                        12345678999999999999999999998754 33445555566788999999999876 48899999


Q ss_pred             ChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHH
Q psy7365         188 SGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAV  267 (601)
Q Consensus       188 SgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~  267 (601)
                      |||||||+++||+|                                      +.+                         
T Consensus       154 S~G~~qrv~laral--------------------------------------~~~-------------------------  170 (257)
T PRK10619        154 SGGQQQRVSIARAL--------------------------------------AME-------------------------  170 (257)
T ss_pred             CHHHHHHHHHHHHH--------------------------------------hcC-------------------------
Confidence            99999999865432                                      233                         


Q ss_pred             HHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         268 TVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       268 ~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                                |+++||||||+|||+.+++.++++|+++.     ..|+|||++||+++++..+|||+++|.+|+++..++
T Consensus       171 ----------p~llllDEPt~~LD~~~~~~l~~~l~~l~-----~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~  235 (257)
T PRK10619        171 ----------PEVLLFDEPTSALDPELVGEVLRIMQQLA-----EEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGA  235 (257)
T ss_pred             ----------CCEEEEeCCcccCCHHHHHHHHHHHHHHH-----hcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence                      58999999999999999999999999873     358999999999999999999999999999987664

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=3.1e-37  Score=315.36  Aligned_cols=216  Identities=25%  Similarity=0.318  Sum_probs=175.7

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      ..+++|++.|++    .++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. .
T Consensus         3 l~~~~l~~~~~~----~~il~~is~~i~~Ge~~~i~G~nGs--GKSTL------l~~i~G~~~p~~G~i~~~g~~~~~~~   70 (258)
T PRK13548          3 LEARNLSVRLGG----RTLLDDVSLTLRPGEVVAILGPNGA--GKSTL------LRALSGELSPDSGEVRLNGRPLADWS   70 (258)
T ss_pred             EEEEeEEEEeCC----eeeeeeeeEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCCEEEECCEEcccCC
Confidence            348899999864    3599999999988      999999  56665      679999999999999999998753 2


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhc
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWF  202 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~  202 (601)
                      ....++.+||+||++.+++.+||+||+.++....+......+.++.++++.+|+.+..++.+.+||||||||+++||+|+
T Consensus        71 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~  150 (258)
T PRK13548         71 PAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLA  150 (258)
T ss_pred             HHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHh
Confidence            33455689999999998888999999988654444333444567889999999999899999999999999998654332


Q ss_pred             chhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEE
Q psy7365         203 NNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVI  282 (601)
Q Consensus       203 ~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~li  282 (601)
                      .+|                                    .|                               -.+|+++|
T Consensus       151 ~~~------------------------------------~~-------------------------------~~~p~lll  163 (258)
T PRK13548        151 QLW------------------------------------EP-------------------------------DGPPRWLL  163 (258)
T ss_pred             ccc------------------------------------cc-------------------------------CCCCCEEE
Confidence            100                                    00                               01368999


Q ss_pred             EecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       283 LDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      |||||+|||+.++..+.+.|+++.    +..|+|||++||+++++..+||++++|.+|+++..++.
T Consensus       164 LDEPt~~LD~~~~~~l~~~l~~~~----~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~  225 (258)
T PRK13548        164 LDEPTSALDLAHQHHVLRLARQLA----HERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTP  225 (258)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCH
Confidence            999999999999999999999873    13589999999999999999999999999998766543

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=2.4e-37  Score=306.19  Aligned_cols=203  Identities=23%  Similarity=0.343  Sum_probs=166.6

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchH
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMT  124 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~  124 (601)
                      .++++++.|++.    .  .|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++.... 
T Consensus         2 ~~~~l~~~~~~~----~--~~is~~i~~Ge~~~l~G~nGs--GKSTL------l~~l~gl~~~~~G~i~~~g~~~~~~~-   66 (211)
T cd03298           2 RLDKIRFSYGEQ----P--MHFDLTFAQGEITAIVGPSGS--GKSTL------LNLIAGFETPQSGRVLINGVDVTAAP-   66 (211)
T ss_pred             EEEeEEEEeCCE----e--cceEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCceEEECCEEcCcCC-
Confidence            378999998532    1  299999988      999999  56665      57999999999999999999875422 


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcch
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNN  204 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~  204 (601)
                      ..++.+||+||++.+|+.+|+.||+.++.........+.+.++.++++.+|+.+..++++.+||||||||+++||++   
T Consensus        67 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al---  143 (211)
T cd03298          67 PADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVL---  143 (211)
T ss_pred             HhHccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHH---
Confidence            23467999999999999999999998764321111223456788999999999989999999999999999754432   


Q ss_pred             hhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEe
Q psy7365         205 KAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILD  284 (601)
Q Consensus       205 ~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLD  284 (601)
                                                         +.+                                   |+++|||
T Consensus       144 -----------------------------------~~~-----------------------------------p~llllD  153 (211)
T cd03298         144 -----------------------------------VRD-----------------------------------KPVLLLD  153 (211)
T ss_pred             -----------------------------------hcC-----------------------------------CCEEEEc
Confidence                                               222                                   5899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc
Q psy7365         285 EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  345 (601)
Q Consensus       285 EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~  345 (601)
                      |||+|||+.++..+++.|+++.    +..|.|+|++||+++++..+||++++|.+|+++..
T Consensus       154 EP~~~LD~~~~~~l~~~l~~~~----~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~  210 (211)
T cd03298         154 EPFAALDPALRAEMLDLVLDLH----AETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQ  210 (211)
T ss_pred             CCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeec
Confidence            9999999999999999999873    23489999999999999999999999999997643

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.9e-37  Score=314.23  Aligned_cols=212  Identities=22%  Similarity=0.296  Sum_probs=173.7

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT  121 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~  121 (601)
                      .+..++|+++.|+.    .++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++..
T Consensus         4 ~~l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~nGs--GKSTL------l~~l~Gl~~~~~G~i~~~g~~~~~   71 (255)
T PRK11300          4 PLLSVSGLMMRFGG----LLAVNNVNLEVREQEIVSLIGPNGA--GKTTV------FNCLTGFYKPTGGTILLRGQHIEG   71 (255)
T ss_pred             ceEEEeeEEEEECC----EEEEEeeeeEEcCCeEEEEECCCCC--CHHHH------HHHHhCCcCCCcceEEECCEECCC
Confidence            45669999999853    4699999999988      999999  57665      579999999999999999998754


Q ss_pred             c-h-HHhcccEEEEccCCCCCCCCCHHHHHHHhHhh----------cCC---C--hHHHHHHHHHHHHHcCCCcccCCcc
Q psy7365         122 D-M-TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL----------KQV---P--KDLAQLEISNMIGDLGIPHKRTSLA  184 (601)
Q Consensus       122 ~-~-~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~----------~~~---~--~~~~~~~~~~~l~~~gl~~~~~~~~  184 (601)
                      . . ...+..++|+||++.+|+.+||.||+.++...          .+.   .  ..+...++.++++.+|+.+..++++
T Consensus        72 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~  151 (255)
T PRK11300         72 LPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA  151 (255)
T ss_pred             CCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh
Confidence            2 2 22345699999999999999999999986431          110   1  1123456788999999999999999


Q ss_pred             ccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhH
Q psy7365         185 NTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSIL  264 (601)
Q Consensus       185 ~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  264 (601)
                      .+||||||||+++||+|                                      +.+                      
T Consensus       152 ~~LS~G~~qrv~la~al--------------------------------------~~~----------------------  171 (255)
T PRK11300        152 GNLAYGQQRRLEIARCM--------------------------------------VTQ----------------------  171 (255)
T ss_pred             hhCCHHHHHHHHHHHHH--------------------------------------hcC----------------------
Confidence            99999999999865432                                      233                      


Q ss_pred             HHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccc
Q psy7365         265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQC  344 (601)
Q Consensus       265 ~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~  344 (601)
                                   |+++||||||+|||+.++..++++|.++.    +..|.|||++||+++++..+||++++|.+|+++.
T Consensus       172 -------------p~llllDEPt~~LD~~~~~~l~~~L~~~~----~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~  234 (255)
T PRK11300        172 -------------PEILMLDEPAAGLNPKETKELDELIAELR----NEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLA  234 (255)
T ss_pred             -------------CCEEEEcCCccCCCHHHHHHHHHHHHHHH----hhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEe
Confidence                         58999999999999999999999999873    2248999999999999999999999999999887


Q ss_pred             ccCc
Q psy7365         345 CGSS  348 (601)
Q Consensus       345 ~G~~  348 (601)
                      .+.+
T Consensus       235 ~~~~  238 (255)
T PRK11300        235 NGTP  238 (255)
T ss_pred             cCCH
Confidence            6643

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=4.2e-37  Score=310.75  Aligned_cols=208  Identities=23%  Similarity=0.309  Sum_probs=172.9

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc-
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD-  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~-  122 (601)
                      ..++++++.|++    .++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++... 
T Consensus         3 i~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGs--GKSTL------l~~l~G~~~p~~G~i~~~g~~~~~~~   70 (242)
T TIGR03411         3 LYLEGLSVSFDG----FKALNDLSLYVDPGELRVIIGPNGA--GKTTM------MDVITGKTRPDEGSVLFGGTDLTGLP   70 (242)
T ss_pred             EEEEeeEEEcCC----eEEeeeeeEEEcCCcEEEEECCCCC--CHHHH------HHHHhCCCCCCCCeEEECCeecCCCC
Confidence            358899999853    3599999999988      999999  56665      6799999999999999999987542 


Q ss_pred             hH-HhcccEEEEccCCCCCCCCCHHHHHHHhHhhc--------CCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHh
Q psy7365         123 MT-TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK--------QVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQR  193 (601)
Q Consensus       123 ~~-~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~--------~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~q  193 (601)
                      .. ..++.+||+||++.+|+.+||.||+.++....        +...++.+.++.++++.+|+.+..++.+.+|||||||
T Consensus        71 ~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~q  150 (242)
T TIGR03411        71 EHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQ  150 (242)
T ss_pred             HHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence            22 23457999999999999999999998864311        1223345567899999999999899999999999999


Q ss_pred             hhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhh
Q psy7365         194 KLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAM  273 (601)
Q Consensus       194 r~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  273 (601)
                      |+++||||+                                      ++                               
T Consensus       151 rv~laral~--------------------------------------~~-------------------------------  161 (242)
T TIGR03411       151 WLEIGMLLM--------------------------------------QD-------------------------------  161 (242)
T ss_pred             HHHHHHHHh--------------------------------------cC-------------------------------
Confidence            998654332                                      32                               


Q ss_pred             ccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         274 SFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       274 ~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                          |++++|||||+|||+.++..++++|+++.      +++|+|++||+++++..+||++++|.+|+++..++.
T Consensus       162 ----p~~lllDEPt~~LD~~~~~~l~~~l~~~~------~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~  226 (242)
T TIGR03411       162 ----PKLLLLDEPVAGMTDEETEKTAELLKSLA------GKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSL  226 (242)
T ss_pred             ----CCEEEecCCccCCCHHHHHHHHHHHHHHh------cCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCH
Confidence                58999999999999999999999999872      268999999999999999999999999998876643

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>KOG0054|consensus

Probab=100.00  E-value=1.7e-36  Score=358.88  Aligned_cols=141  Identities=23%  Similarity=0.328  Sum_probs=117.2

Q ss_pred             ccccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcc-------ccccc----CcCChHHHHHH
Q psy7365         371 KSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHY-------SDREV----RTLSGGNKRKL  439 (601)
Q Consensus       371 ~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~-------~~~~~----~~LSgGqkQRl  439 (601)
                      |++++++||+|.+|.. |+|.||.=+...       .++.+-++||..+|.+.       +|.++    .++|-||||-+
T Consensus      1213 RsrlsIIPQdPvLFsG-TvR~NLDPf~e~-------sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLl 1284 (1381)
T KOG0054|consen 1213 RSRLSIIPQDPVLFSG-TVRFNLDPFDEY-------SDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLL 1284 (1381)
T ss_pred             HhcCeeeCCCCceecC-ccccccCccccc-------CHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHH
Confidence            5689999999999875 999998643221       12345666666665432       23333    56999999999


Q ss_pred             HHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         440 STAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       440 ~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      +|||||+.+++||+|||.|+.+|+++-..+.+.|++-- +++|||.+-|.++-+.. ||||+||++|+++..|+|.+|.+
T Consensus      1285 CLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~TVmd-~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1285 CLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred             HHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccchhhh-cCeEEEeeCCeEeecCChHHHHh
Confidence            99999999999999999999999999999999999843 47999999999999998 89999999999999999999986


Q ss_pred             Hh
Q psy7365         520 KY  521 (601)
Q Consensus       520 ~~  521 (601)
                      +.
T Consensus      1363 ~~ 1364 (1381)
T KOG0054|consen 1363 DK 1364 (1381)
T ss_pred             CC
Confidence            53

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=2.5e-37  Score=305.44  Aligned_cols=205  Identities=20%  Similarity=0.340  Sum_probs=181.1

Q ss_pred             ccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc-------cccccccccccccccCCc---ccccccccCCCC
Q psy7365         311 SLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF-------LKNSFARGYYLSLDMKSA---PQKSYIGYCPQF  380 (601)
Q Consensus       311 ~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l-------Lk~~~g~g~~igld~~~~---~~~~~ig~v~Q~  380 (601)
                      .+.+++++   .++++-..-++.+++++...   +|+++.       +.++.|+.++.+.++...   ..|++|||+-|.
T Consensus        10 ~y~~~~av---~~v~l~I~~gef~vliGpSG---sGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQq   83 (309)
T COG1125          10 RYGNKKAV---DDVNLTIEEGEFLVLIGPSG---SGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQ   83 (309)
T ss_pred             hcCCceee---eeeeEEecCCeEEEEECCCC---CcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhh
Confidence            34566666   78888888899999997532   555543       345667777777666543   358999999999


Q ss_pred             cccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCC--cccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCC
Q psy7365         381 DALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG--HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPT  458 (601)
Q Consensus       381 ~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~--~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPT  458 (601)
                      .++||++||.||+.+...+.++++++.+++++++|+.+||.  ++.+|+|.+|||||||||.+||||+.+|+++++|||+
T Consensus        84 igLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPF  163 (309)
T COG1125          84 IGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPF  163 (309)
T ss_pred             cccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCc
Confidence            99999999999999999999999999999999999999997  4899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHh
Q psy7365         459 SGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKY  521 (601)
Q Consensus       459 sGLD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~  521 (601)
                      ++|||.+|..+.+.++++.++ |+||+++|||++|+..++|||++|++|+++..++|+++.++.
T Consensus       164 gALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P  227 (309)
T COG1125         164 GALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP  227 (309)
T ss_pred             cccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence            999999999999999999776 999999999999999999999999999999999999987643

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=100.00  E-value=6.6e-37  Score=308.84  Aligned_cols=197  Identities=23%  Similarity=0.359  Sum_probs=166.8

Q ss_pred             CccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEc-cC
Q psy7365          64 IDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCP-QY  136 (601)
Q Consensus        64 ~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~-Q~  136 (601)
                      +..++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++.......++.+||+| |.
T Consensus        32 ~~~~il~~vs~~i~~Ge~~~i~G~NGs--GKSTL------l~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~  103 (236)
T cd03267          32 REVEALKGISFTIEKGEIVGFIGPNGA--GKTTT------LKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQK  103 (236)
T ss_pred             CCeeeeeceeEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCc
Confidence            446699999999988      999999  56665      6799999999999999999876443344567899998 55


Q ss_pred             CCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhh
Q psy7365         137 NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNA  216 (601)
Q Consensus       137 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~  216 (601)
                      +.+|+.+|+.||+.+.....+....+...++.++++.+|+.+..++++.+||||||||+++|+++               
T Consensus       104 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al---------------  168 (236)
T cd03267         104 TQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAAL---------------  168 (236)
T ss_pred             cccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH---------------
Confidence            77888999999999877666666666667788999999999889999999999999999754332               


Q ss_pred             hhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHH
Q psy7365         217 ANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRR  296 (601)
Q Consensus       217 ~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~  296 (601)
                                             +.+                                   |+++||||||+|||+.+++
T Consensus       169 -----------------------~~~-----------------------------------p~llllDEPt~~LD~~~~~  190 (236)
T cd03267         169 -----------------------LHE-----------------------------------PEILFLDEPTIGLDVVAQE  190 (236)
T ss_pred             -----------------------hcC-----------------------------------CCEEEEcCCCCCCCHHHHH
Confidence                                   232                                   5899999999999999999


Q ss_pred             HHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc
Q psy7365         297 SIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  345 (601)
Q Consensus       297 ~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~  345 (601)
                      .++++|+++.    +..|.|||++||+++++..+||++++|.+|++...
T Consensus       191 ~l~~~l~~~~----~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~  235 (236)
T cd03267         191 NIRNFLKEYN----RERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYD  235 (236)
T ss_pred             HHHHHHHHHH----hcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEec
Confidence            9999999873    23478999999999999999999999999998653

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=5.4e-37  Score=324.22  Aligned_cols=217  Identities=21%  Similarity=0.261  Sum_probs=180.3

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCC---eeEEEEcccc
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVS---SGTAKIYDHD  118 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~---~G~v~~~g~~  118 (601)
                      .+..++||++.|+..++...+++|+||++.+      +|+|||  |||||      .++|+|+++|+   +|+|.++|.+
T Consensus        11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGs--GKSTL------~~~l~Gl~~p~~~~sG~I~~~G~~   82 (330)
T PRK09473         11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGS--GKSQT------AFALMGLLAANGRIGGSATFNGRE   82 (330)
T ss_pred             ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCc--hHHHH------HHHHHcCCCCCCCCCeEEEECCEE
Confidence            3566999999997655567799999999988      999999  56655      46999999996   9999999999


Q ss_pred             CCCc-hH---Hhc-ccEEEEccCC--CCCCCCCHHHHHHHhHhhc-CCChHHHHHHHHHHHHHcCCCcc---cCCccccC
Q psy7365         119 IRTD-MT---TIR-RSLGVCPQYN--ALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIGDLGIPHK---RTSLANTL  187 (601)
Q Consensus       119 ~~~~-~~---~~~-~~ig~v~Q~~--~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~---~~~~~~~L  187 (601)
                      +..- ..   ..| +.|+||||+|  .+++.+|+.+++.+....+ +.+..+...++.++++.+||.+.   .++++.+|
T Consensus        83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~L  162 (330)
T PRK09473         83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEF  162 (330)
T ss_pred             CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccC
Confidence            8542 22   223 4799999998  5889999999998766554 35666777889999999999753   47899999


Q ss_pred             ChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHH
Q psy7365         188 SGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAV  267 (601)
Q Consensus       188 SgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~  267 (601)
                      ||||+||++||+||                                      +.+                         
T Consensus       163 SgG~~QRv~IArAL--------------------------------------~~~-------------------------  179 (330)
T PRK09473        163 SGGMRQRVMIAMAL--------------------------------------LCR-------------------------  179 (330)
T ss_pred             CHHHHHHHHHHHHH--------------------------------------HcC-------------------------
Confidence            99999999754432                                      233                         


Q ss_pred             HHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         268 TVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       268 ~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                                |++||+||||++||+.++..++++|++++    +..|.|+|++|||++++..+|||+++|.+|+++..|.
T Consensus       180 ----------P~llilDEPts~LD~~~~~~i~~lL~~l~----~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~  245 (330)
T PRK09473        180 ----------PKLLIADEPTTALDVTVQAQIMTLLNELK----REFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN  245 (330)
T ss_pred             ----------CCEEEEeCCCccCCHHHHHHHHHHHHHHH----HHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence                      58999999999999999999999999984    2348999999999999999999999999999998876


Q ss_pred             cc
Q psy7365         348 SV  349 (601)
Q Consensus       348 ~~  349 (601)
                      ..
T Consensus       246 ~~  247 (330)
T PRK09473        246 AR  247 (330)
T ss_pred             HH
Confidence            53

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=1.2e-36  Score=373.76  Aligned_cols=275  Identities=27%  Similarity=0.472  Sum_probs=233.0

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCc--ccccccccCCCCcccCCCCCHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSA--PQKSYIGYCPQFDALNDRLTPREH  392 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~--~~~~~ig~v~Q~~~l~~~lTv~E~  392 (601)
                      +++++-..-++.+++++...   .|+++++       +++.|..++.|.++...  ..++.+|||||++.+++.+||+||
T Consensus       947 ~~lsl~I~~Gei~aLLG~NG---AGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~ 1023 (2272)
T TIGR01257       947 DRLNITFYENQITAFLGHNG---AGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEH 1023 (2272)
T ss_pred             EeeEEEEcCCcEEEEECCCC---ChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHH
Confidence            77777777888888887422   4555433       33445555555544321  235679999999999999999999


Q ss_pred             HHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHH
Q psy7365         393 LEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTC  472 (601)
Q Consensus       393 L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~l  472 (601)
                      +.|+.++++.+.++.+++++++++.++|.+..++++++|||||||||+||+||+++|+++||||||+||||.+++.+|++
T Consensus      1024 L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~l 1103 (2272)
T TIGR01257      1024 ILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDL 1103 (2272)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHH
Confidence            99998888876666667899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHhCCceEEEEEecCC------------------
Q psy7365         473 IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEG------------------  534 (601)
Q Consensus       473 L~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~~~~~~l~i~~~~~------------------  534 (601)
                      |++++ +|+|||++||++++++.+||||++|++|++++.|++++|+++++.+|.+++.....                  
T Consensus      1104 L~~l~-~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g~gy~l~~~~~~~~~~~~~~~~~~~~~~~~~ 1182 (2272)
T TIGR01257      1104 LLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVRKMKNIQSQRGGCEGTCSCTSK 1182 (2272)
T ss_pred             HHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhcCCcEEEEEEeccccccccccccccccccccc
Confidence            99984 69999999999999999999999999999999999999999999999988754310                  


Q ss_pred             ---------------------CchhHHHHHhhcCCCceeEEeeCcEEEEEEcCCc---ccHHHHHHHHHHccccCCCeeE
Q psy7365         535 ---------------------RSADAQTYLSLNLPVADLVETHATQLQYRISGAV---SDLGALFRTLESAKTEAGLIVD  590 (601)
Q Consensus       535 ---------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~L~~~~~~~~~i~~  590 (601)
                                           ....+.+++...+|++...+..+.+++|.+|...   ..++.+|+.|++...+++ |.+
T Consensus      1183 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~iP~a~l~~~~g~el~y~LP~~~~~~~~f~~lf~~Le~~~~~lg-i~s 1261 (2272)
T TIGR01257      1183 GFSTRCPARVDEITPEQVLDGDVNELMDLVYHHVPEAKLVECIGQELIFLLPNKNFKQRAYASLFRELEETLADLG-LSS 1261 (2272)
T ss_pred             ccccccccccccccccccccccHHHHHHHHHHhCCCcEEEeccCCEEEEEecccccccchHHHHHHHHHhhHhhCC-Cce
Confidence                                 1234566788889999998889999999999764   358999999998877888 999


Q ss_pred             EEecCCCCCCC
Q psy7365         591 YSLSQTSLEDS  601 (601)
Q Consensus       591 ~~v~~~sLEdv  601 (601)
                      |.++.+|||||
T Consensus      1262 ygis~tTLEeV 1272 (2272)
T TIGR01257      1262 FGISDTPLEEI 1272 (2272)
T ss_pred             EEeecCCHHHH
Confidence            99999999986

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-37  Score=304.65  Aligned_cols=212  Identities=25%  Similarity=0.378  Sum_probs=179.4

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC--
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT--  121 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~--  121 (601)
                      ..+++|+-.||+.    ++|.||||++.+      +||||+  |||||      .+.|+|+++|.+|+|.++|+|++.  
T Consensus         4 L~v~~l~~~YG~~----~~L~gvsl~v~~Geiv~llG~NGa--GKTTl------Lkti~Gl~~~~~G~I~~~G~dit~~p   71 (237)
T COG0410           4 LEVENLSAGYGKI----QALRGVSLEVERGEIVALLGRNGA--GKTTL------LKTIMGLVRPRSGRIIFDGEDITGLP   71 (237)
T ss_pred             eeEEeEeecccce----eEEeeeeeEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCeeEEECCeecCCCC
Confidence            4588999998874    499999999988      999999  56654      579999999999999999999975  


Q ss_pred             chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcC-CCcccCCccccCChHHHhhhhchhh
Q psy7365         122 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLG-IPHKRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       122 ~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g-l~~~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                      ++...|.+++||||.-.+|+.+||+||+..++....- +...+..++++.+.|- |.+.++++.++|||||||.+++|||
T Consensus        72 ~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRA  150 (237)
T COG0410          72 PHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARA  150 (237)
T ss_pred             HHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHH
Confidence            4556788999999999999999999999987655432 1222223788899997 7889999999999999999986543


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      |+                                      .+                                   |++
T Consensus       151 Lm--------------------------------------~~-----------------------------------Pkl  157 (237)
T COG0410         151 LM--------------------------------------SR-----------------------------------PKL  157 (237)
T ss_pred             Hh--------------------------------------cC-----------------------------------CCE
Confidence            32                                      22                                   599


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  351 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL  351 (601)
                      |+|||||.||-|.-..++.+.|++++    +..|.||++++++..++.+++||.++|.+|+++..|+...+
T Consensus       158 LLLDEPs~GLaP~iv~~I~~~i~~l~----~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL  224 (237)
T COG0410         158 LLLDEPSEGLAPKIVEEIFEAIKELR----KEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAEL  224 (237)
T ss_pred             EEecCCccCcCHHHHHHHHHHHHHHH----HcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHH
Confidence            99999999999999999999999994    34588999999999999999999999999999999876443

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.7e-37  Score=289.00  Aligned_cols=210  Identities=23%  Similarity=0.280  Sum_probs=182.8

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      ++.+.+++|+-+...+....++||+|.|.+      +||||+  |||||      +-+++|+..|++|+|++.|+++.+-
T Consensus         6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGS--GKSTL------l~vlAGLd~~ssGeV~l~G~~L~~l   77 (228)
T COG4181           6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGS--GKSTL------LAVLAGLDDPSSGEVRLLGQPLHKL   77 (228)
T ss_pred             eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCC--cHHhH------HHHHhcCCCCCCceEEEcCcchhhc
Confidence            677899999998888899999999999988      999999  56665      4589999999999999999998642


Q ss_pred             ----hHH-hcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhc
Q psy7365         123 ----MTT-IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDN  197 (601)
Q Consensus       123 ----~~~-~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~  197 (601)
                          ... ..+.+|+|||.+.+.|+||..||++.++++.|-.....+..+.++|+.+||.+..+++|.+|||||||||+|
T Consensus        78 dEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAi  157 (228)
T COG4181          78 DEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVAL  157 (228)
T ss_pred             CHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHH
Confidence                222 346799999999999999999999999999986656667778899999999999999999999999999986


Q ss_pred             hhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCC
Q psy7365         198 VKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVP  277 (601)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  277 (601)
                      |||+.                                      .                                   .
T Consensus       158 ARAfa--------------------------------------~-----------------------------------~  164 (228)
T COG4181         158 ARAFA--------------------------------------G-----------------------------------R  164 (228)
T ss_pred             HHHhc--------------------------------------C-----------------------------------C
Confidence            54321                                      1                                   2


Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccc
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQC  344 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~  344 (601)
                      |++||-||||.+||-.+-+.+.+++-.++    .+.|.|.+++|||...+. .|+|.+-|.+|+++.
T Consensus       165 P~vLfADEPTGNLD~~Tg~~iaDLlF~ln----re~G~TlVlVTHD~~LA~-Rc~R~~r~~~G~l~~  226 (228)
T COG4181         165 PDVLFADEPTGNLDRATGDKIADLLFALN----RERGTTLVLVTHDPQLAA-RCDRQLRLRSGRLVE  226 (228)
T ss_pred             CCEEeccCCCCCcchhHHHHHHHHHHHHh----hhcCceEEEEeCCHHHHH-hhhheeeeecceecc
Confidence            69999999999999999999999998884    457999999999988776 699999999999864

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.2e-37  Score=296.59  Aligned_cols=198  Identities=29%  Similarity=0.429  Sum_probs=177.3

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcc-------ccccccccccccccccCCcc--cccccccCCCCcccCCCCCHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSV-------FLKNSFARGYYLSLDMKSAP--QKSYIGYCPQFDALNDRLTPREH  392 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~-------lLk~~~g~g~~igld~~~~~--~~~~ig~v~Q~~~l~~~lTv~E~  392 (601)
                      .|+++..+-+..+.+++...   .|+++       ++.++.|..++.+.|....+  .+++||+++.+.++|..||++||
T Consensus        19 rdVSF~ae~Gei~GlLG~NG---AGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEn   95 (245)
T COG4555          19 RDVSFEAEEGEITGLLGENG---AGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAREN   95 (245)
T ss_pred             hheeEEeccceEEEEEcCCC---CCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHH
Confidence            56666667777788886321   44444       34566777777787765544  58899999988999999999999


Q ss_pred             HHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHH
Q psy7365         393 LEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTC  472 (601)
Q Consensus       393 L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~l  472 (601)
                      |.|+++++++...+.+.+++++.+.|+|.+..|++++.||.||||||+|||||+++|++++|||||||||..+++.+.++
T Consensus        96 l~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~df  175 (245)
T COG4555          96 LKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDF  175 (245)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHhC
Q psy7365         473 IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYG  522 (601)
Q Consensus       473 L~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~~  522 (601)
                      |++++++|++||++||+|+|++++||||+++++|+++..|+++.+..+..
T Consensus       176 i~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~~  225 (245)
T COG4555         176 IKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTV  225 (245)
T ss_pred             HHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999988754

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.9e-37  Score=309.82  Aligned_cols=208  Identities=22%  Similarity=0.327  Sum_probs=174.4

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC---
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT---  121 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~---  121 (601)
                      .++++++.|+.    .++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++..   
T Consensus         4 ~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~g~~~~~~~~   71 (242)
T PRK11124          4 QLNGINCFYGA----HQALFDITLDCPQGETLVLLGPSGA--GKSSL------LRVLNLLEMPRSGTLNIAGNHFDFSKT   71 (242)
T ss_pred             EEEeeEEEECC----eeeEeeeeeEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCceEEEECCEecccccc
Confidence            48899999864    3599999999988      999999  56665      579999999999999999998631   


Q ss_pred             ----chHHhcccEEEEccCCCCCCCCCHHHHHHH-hHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhh
Q psy7365         122 ----DMTTIRRSLGVCPQYNALFDKLTVEEHMWF-YSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD  196 (601)
Q Consensus       122 ----~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~  196 (601)
                          .....++.++|+||++.+|+.+|+.||+.+ .....+.+..+...++.++++.+|+.+..++.+.+||||||||++
T Consensus        72 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~  151 (242)
T PRK11124         72 PSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVA  151 (242)
T ss_pred             cchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence                123456789999999999999999999975 334445555555667889999999998899999999999999997


Q ss_pred             chhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccC
Q psy7365         197 NVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFV  276 (601)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  276 (601)
                      +||++                                      +.+                                  
T Consensus       152 laral--------------------------------------~~~----------------------------------  159 (242)
T PRK11124        152 IARAL--------------------------------------MME----------------------------------  159 (242)
T ss_pred             HHHHH--------------------------------------hcC----------------------------------
Confidence            54432                                      222                                  


Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                       |+++||||||+|||+.++..+++.|+++.     .+|+|+|++||+.+++..+||++++|.+|+++..++.
T Consensus       160 -p~llilDEPt~~LD~~~~~~l~~~l~~~~-----~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~  225 (242)
T PRK11124        160 -PQVLLFDEPTAALDPEITAQIVSIIRELA-----ETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA  225 (242)
T ss_pred             -CCEEEEcCCCCcCCHHHHHHHHHHHHHHH-----HcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence             58999999999999999999999999873     3589999999999999999999999999998876543

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.8e-37  Score=316.21  Aligned_cols=209  Identities=24%  Similarity=0.375  Sum_probs=175.2

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC---
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT---  121 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~---  121 (601)
                      .+++|++.|+.   ...+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|+++|.++..   
T Consensus         3 ~~~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~nGs--GKSTL------l~~i~Gl~~~~~G~i~~~g~~~~~~~~   71 (275)
T PRK13639          3 ETRDLKYSYPD---GTEALKGINFKAEKGEMVALLGPNGA--GKSTL------FLHFNGILKPTSGEVLIKGEPIKYDKK   71 (275)
T ss_pred             EEEEEEEEeCC---CCeeeeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCccEEEECCEECccccc
Confidence            47899999852   23599999999988      999999  56655      579999999999999999998742   


Q ss_pred             chHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh
Q psy7365         122 DMTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       122 ~~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                      .....++.+||+||++. .++..||.||+.|+....+....+..+++.++++.+||.+..++++.+|||||+||+++||+
T Consensus        72 ~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~lara  151 (275)
T PRK13639         72 SLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGI  151 (275)
T ss_pred             hHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHH
Confidence            22345678999999984 44467999999887655555555666788999999999999999999999999999976543


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      |+                                      .                                   +|++
T Consensus       152 l~--------------------------------------~-----------------------------------~p~l  158 (275)
T PRK13639        152 LA--------------------------------------M-----------------------------------KPEI  158 (275)
T ss_pred             Hh--------------------------------------c-----------------------------------CCCE
Confidence            32                                      2                                   2589


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      +||||||+|||+.++..++++|.++.     .+|.|||++||+++++..+||++++|.+|+++..+++
T Consensus       159 lllDEPt~gLD~~~~~~l~~~l~~l~-----~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~  221 (275)
T PRK13639        159 IVLDEPTSGLDPMGASQIMKLLYDLN-----KEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTP  221 (275)
T ss_pred             EEEeCCCcCCCHHHHHHHHHHHHHHH-----HCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence            99999999999999999999999873     2489999999999999999999999999999887754

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.5e-37  Score=315.53  Aligned_cols=211  Identities=27%  Similarity=0.398  Sum_probs=174.3

Q ss_pred             hhcccccccccCC-CccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC--
Q psy7365          51 LFESLSENRDKLG-IDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT--  121 (601)
Q Consensus        51 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~--  121 (601)
                      .+++|++.|++.. ...++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++..  
T Consensus         4 ~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGs--GKSTL------l~~i~Gl~~p~~G~i~~~g~~i~~~~   75 (280)
T PRK13649          4 NLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGS--GKSTI------MQLLNGLHVPTQGSVRVDDTLITSTS   75 (280)
T ss_pred             EEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCC--CHHHH------HHHHhCCCCCCceEEEECCEEccccc
Confidence            4889999986321 124599999999988      999999  56665      679999999999999999998753  


Q ss_pred             ---chHHhcccEEEEccCC--CCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC-cccCCccccCChHHHhhh
Q psy7365         122 ---DMTTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP-HKRTSLANTLSGGMQRKL  195 (601)
Q Consensus       122 ---~~~~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qr~  195 (601)
                         .....++.+||+||++  .+| ..||.||+.|+....+.+.++.+.++.++++.+||. ...++++.+||||||||+
T Consensus        76 ~~~~~~~~~~~i~~~~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv  154 (280)
T PRK13649         76 KNKDIKQIRKKVGLVFQFPESQLF-EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRV  154 (280)
T ss_pred             cccCHHHHHhheEEEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH
Confidence               2344667899999997  345 479999999877666666666667788999999997 467999999999999999


Q ss_pred             hchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhcc
Q psy7365         196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSF  275 (601)
Q Consensus       196 ~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  275 (601)
                      ++|||+                                      +.+                                 
T Consensus       155 ~la~al--------------------------------------~~~---------------------------------  163 (280)
T PRK13649        155 AIAGIL--------------------------------------AME---------------------------------  163 (280)
T ss_pred             HHHHHH--------------------------------------HcC---------------------------------
Confidence            754432                                      232                                 


Q ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       276 ~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                        |++|||||||+|||+.+++.+++.|+++.     .+|+|||++||+++++..+||++++|.+|+++..+++
T Consensus       164 --p~lllLDEPt~~LD~~~~~~l~~~l~~~~-----~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~  229 (280)
T PRK13649        164 --PKILVLDEPTAGLDPKGRKELMTLFKKLH-----QSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKP  229 (280)
T ss_pred             --CCEEEEeCCcccCCHHHHHHHHHHHHHHH-----HCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCH
Confidence              58999999999999999999999999873     3489999999999999999999999999998776643

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=100.00  E-value=6.6e-37  Score=303.87  Aligned_cols=199  Identities=24%  Similarity=0.379  Sum_probs=165.4

Q ss_pred             ccccccccCCCccceeecceEEeec-----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-----ch
Q psy7365          54 SLSENRDKLGIDSYGISDTSLEEQP-----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-----DM  123 (601)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-----~~  123 (601)
                      +|+|.|++..     + |+||++.+     +||||+  |||||      .++|+|+++|++|+|.++|.++..     +.
T Consensus         5 ~l~~~~~~~~-----~-~vsl~i~~e~~~i~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~   70 (214)
T cd03297           5 DIEKRLPDFT-----L-KIDFDLNEEVTGIFGASGA--GKSTL------LRCIAGLEKPDGGTIVLNGTVLFDSRKKINL   70 (214)
T ss_pred             eeeEecCCee-----e-CceEEEcceeEEEECCCCC--CHHHH------HHHHhCCCCCCCceEEECCEecccccchhhh
Confidence            7899987632     3 99999976     999999  56665      579999999999999999998742     12


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcc
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFN  203 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~  203 (601)
                      ...++.+||+||++.+|+.+|+.||+.++....  .....+.++.++++.+|+.+..++++.+||||||||+++||++  
T Consensus        71 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al--  146 (214)
T cd03297          71 PPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARAL--  146 (214)
T ss_pred             hhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHH--
Confidence            235678999999999999999999998865432  2334456788999999999888999999999999999854432  


Q ss_pred             hhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEE
Q psy7365         204 NKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVIL  283 (601)
Q Consensus       204 ~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liL  283 (601)
                                                          +.+                                   |+++||
T Consensus       147 ------------------------------------~~~-----------------------------------p~llll  155 (214)
T cd03297         147 ------------------------------------AAQ-----------------------------------PELLLL  155 (214)
T ss_pred             ------------------------------------hcC-----------------------------------CCEEEE
Confidence                                                222                                   589999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc
Q psy7365         284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  345 (601)
Q Consensus       284 DEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~  345 (601)
                      ||||+|||+.+++.++++|+++.    +..|+|+|++||+++++..+||++++|.+|+++..
T Consensus       156 DEPt~~LD~~~~~~l~~~l~~~~----~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  213 (214)
T cd03297         156 DEPFSALDRALRLQLLPELKQIK----KNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYI  213 (214)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHH----HHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEec
Confidence            99999999999999999999873    22389999999999999999999999999998654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-36  Score=309.26  Aligned_cols=208  Identities=23%  Similarity=0.318  Sum_probs=173.0

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCC-----CeeEEEEcccc
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPV-----SSGTAKIYDHD  118 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~-----~~G~v~~~g~~  118 (601)
                      ..+++|++.|++    .++++|+||++.+      +|||||  |||||      .++|+|+++|     ++|+|.++|.+
T Consensus         4 l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~i~G~nGs--GKSTL------l~~i~G~~~~~~~~~~~G~i~~~g~~   71 (250)
T PRK14247          4 IEIRDLKVSFGQ----VEVLDGVNLEIPDNTITALMGPSGS--GKSTL------LRVFNRLIELYPEARVSGEVYLDGQD   71 (250)
T ss_pred             EEEEeeEEEECC----eeeeecceeEEcCCCEEEEECCCCC--CHHHH------HHHHhccCCCCCCCCCceEEEECCEE
Confidence            458999999864    3599999999988      999999  56665      5799999974     79999999998


Q ss_pred             CCC-chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCC--ChHHHHHHHHHHHHHcCCCc----ccCCccccCChHH
Q psy7365         119 IRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV--PKDLAQLEISNMIGDLGIPH----KRTSLANTLSGGM  191 (601)
Q Consensus       119 ~~~-~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~gl~~----~~~~~~~~LSgG~  191 (601)
                      +.. +....++.+||+||++.+|+.+||.||+.++....+.  +..+..+++.++++.+|+.+    ..++.+.+|||||
T Consensus        72 i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~  151 (250)
T PRK14247         72 IFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQ  151 (250)
T ss_pred             CCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHH
Confidence            854 3345667899999999989999999999987644332  33455667889999999853    5789999999999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||+++||||+                                      .                              
T Consensus       152 ~qrv~laral~--------------------------------------~------------------------------  163 (250)
T PRK14247        152 QQRLCIARALA--------------------------------------F------------------------------  163 (250)
T ss_pred             HHHHHHHHHHh--------------------------------------c------------------------------
Confidence            99998654332                                      2                              


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                           +|+++||||||+|||+.++..+++.|+++.      +|.|+|++||+++++..+||++++|.+|++...++.
T Consensus       164 -----~p~lllLDEP~~~LD~~~~~~l~~~l~~~~------~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~  229 (250)
T PRK14247        164 -----QPEVLLADEPTANLDPENTAKIESLFLELK------KDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPT  229 (250)
T ss_pred             -----CCCEEEEcCCCccCCHHHHHHHHHHHHHHh------cCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCH
Confidence                 258999999999999999999999999872      378999999999999999999999999998776643

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=5.3e-36  Score=313.67  Aligned_cols=268  Identities=26%  Similarity=0.411  Sum_probs=199.0

Q ss_pred             CcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCc--ccccccccCCCCcccC
Q psy7365         314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSA--PQKSYIGYCPQFDALN  384 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~--~~~~~ig~v~Q~~~l~  384 (601)
                      +++++   +++++-..-++.+++++...   .|+++++       ++..|..++.|.+....  ..++++||+||++.+|
T Consensus        19 ~~~~l---~~vsl~i~~Gei~gllGpNG---aGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~   92 (306)
T PRK13537         19 DKLVV---DGLSFHVQRGECFGLLGPNG---AGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLD   92 (306)
T ss_pred             CeEEE---ecceEEEeCCcEEEEECCCC---CCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCC
Confidence            44544   88999989999999997522   4555433       33445555555554322  2467899999999999


Q ss_pred             CCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHH
Q psy7365         385 DRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG  464 (601)
Q Consensus       385 ~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~  464 (601)
                      +.+|++||+.|++.+++.+..+..+++.++++.++|.+..++++++||||||||++||+||+++|++|||||||+||||.
T Consensus        93 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~  172 (306)
T PRK13537         93 PDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQ  172 (306)
T ss_pred             CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHH
Confidence            99999999999888888766666678899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHhCCceEEEEEecCCCchhHHHHHh
Q psy7365         465 ARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSADAQTYLS  544 (601)
Q Consensus       465 ~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~~~~~~l~i~~~~~~~~~~~~~l~  544 (601)
                      +++.+|++|++++++|+|||++||++++++.+||||++|++|++++.|+++++.+.......+.+....  .......+.
T Consensus       173 ~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~  250 (306)
T PRK13537        173 ARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIGCDVIEIYGPD--PVALRDELA  250 (306)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhccCCCeEEEEEcCC--hHHHHHHhh
Confidence            999999999999878999999999999999999999999999999999999998764333333343221  111111111


Q ss_pred             hcCCCceeEEeeCcEEEEEEcCCcccHHHHHHHHHHccccCCCeeEEEecCCCCCCC
Q psy7365         545 LNLPVADLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLEDS  601 (601)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~i~~~~v~~~sLEdv  601 (601)
                         +.....+..+..+.+...    ....+++.+.+..   . + .+...++||||+
T Consensus       251 ---~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~---~-~-~~~~~~~sLed~  295 (306)
T PRK13537        251 ---PLAERTEISGETLFCYVR----DPEPLHARLKGRA---G-L-RYLHRPANLEDV  295 (306)
T ss_pred             ---hccceeeeeCCEEEEEeC----CHHHHHHHHHhcc---C-c-eEEecCCCHHHH
Confidence               112122223344443322    2345556554321   2 3 344578999985

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.8e-37  Score=313.76  Aligned_cols=213  Identities=25%  Similarity=0.355  Sum_probs=179.1

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT  121 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~  121 (601)
                      ++..++++++.|++  ...++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++..
T Consensus         6 ~~l~i~~l~~~~~~--~~~~~l~~isl~i~~Ge~~~I~G~nGs--GKSTL------l~~i~Gl~~~~~G~i~~~g~~~~~   75 (269)
T PRK13648          6 SIIVFKNVSFQYQS--DASFTLKDVSFNIPKGQWTSIVGHNGS--GKSTI------AKLMIGIEKVKSGEIFYNNQAITD   75 (269)
T ss_pred             ceEEEEEEEEEcCC--CCCcceeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCceEEEECCEECCc
Confidence            34568999999864  224689999999988      999999  56665      579999999999999999998753


Q ss_pred             -chHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365         122 -DMTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK  199 (601)
Q Consensus       122 -~~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~  199 (601)
                       +....++.+||+||+|. +|+..|+.+|+.|.....+.+.+....++.++++.+|+.+..++++.+||||||||+++||
T Consensus        76 ~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lar  155 (269)
T PRK13648         76 DNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAG  155 (269)
T ss_pred             CCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHH
Confidence             34456778999999985 7888999999998876666666666677889999999999999999999999999998654


Q ss_pred             hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365         200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS  279 (601)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  279 (601)
                      ||+                                      .+                                   |+
T Consensus       156 al~--------------------------------------~~-----------------------------------p~  162 (269)
T PRK13648        156 VLA--------------------------------------LN-----------------------------------PS  162 (269)
T ss_pred             HHH--------------------------------------cC-----------------------------------CC
Confidence            332                                      33                                   58


Q ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      ++||||||+|||+.++..+++.|+++.    +..|+|+|++||+++++.. |||+++|.+|+++..+++
T Consensus       163 lllLDEPt~~LD~~~~~~l~~~L~~~~----~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~  226 (269)
T PRK13648        163 VIILDEATSMLDPDARQNLLDLVRKVK----SEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTP  226 (269)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCH
Confidence            999999999999999999999999873    2248999999999999975 999999999999877653

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=6.9e-37  Score=312.83  Aligned_cols=199  Identities=22%  Similarity=0.296  Sum_probs=168.2

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      ...++||++.|++    .++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.  
T Consensus        12 ~l~i~~l~~~~~~----~~il~~isl~i~~Ge~~~I~G~NGs--GKSTL------lk~l~Gl~~p~~G~i~~~g~~~~--   77 (257)
T PRK11247         12 PLLLNAVSKRYGE----RTVLNQLDLHIPAGQFVAVVGRSGC--GKSTL------LRLLAGLETPSAGELLAGTAPLA--   77 (257)
T ss_pred             cEEEEEEEEEECC----cceeeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCeEEEECCEEHH--
Confidence            3559999999864    3599999999988      999999  56665      57999999999999999987652  


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhc
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWF  202 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~  202 (601)
                        ..++.+||+||++.+|+.+||.||+.++..  .    ..+.++.++++.+|+.+..++++.+||||||||+++||+| 
T Consensus        78 --~~~~~i~~v~q~~~l~~~~tv~enl~~~~~--~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL-  148 (257)
T PRK11247         78 --EAREDTRLMFQDARLLPWKKVIDNVGLGLK--G----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARAL-  148 (257)
T ss_pred             --HhhCceEEEecCccCCCCCcHHHHHHhccc--c----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH-
Confidence              346789999999999999999999987531  1    1245678899999999999999999999999999865432 


Q ss_pred             chhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEE
Q psy7365         203 NNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVI  282 (601)
Q Consensus       203 ~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~li  282 (601)
                                                           +.+                                   |+++|
T Consensus       149 -------------------------------------~~~-----------------------------------p~lll  156 (257)
T PRK11247        149 -------------------------------------IHR-----------------------------------PGLLL  156 (257)
T ss_pred             -------------------------------------hcC-----------------------------------CCEEE
Confidence                                                 222                                   58999


Q ss_pred             EecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccccc
Q psy7365         283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  346 (601)
Q Consensus       283 LDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G  346 (601)
                      |||||+|||+.++..++++|+++.    +..|+|||++||+++++..+||++++|.+|+++..+
T Consensus       157 LDEPt~~LD~~~~~~l~~~L~~~~----~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~  216 (257)
T PRK11247        157 LDEPLGALDALTRIEMQDLIESLW----QQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDL  216 (257)
T ss_pred             EeCCCCCCCHHHHHHHHHHHHHHH----HHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence            999999999999999999999873    235899999999999999999999999999987644

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.9e-37  Score=322.72  Aligned_cols=215  Identities=17%  Similarity=0.192  Sum_probs=174.3

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCC----CCeeEEEEcccc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLP----VSSGTAKIYDHD  118 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~----~~~G~v~~~g~~  118 (601)
                      +..++||++.|+..++...+++|+||++.+      +|||||  |||||      .++|+|+++    |++|+|.++|.+
T Consensus         3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGs--GKSTL------l~~i~Gl~~~~~~~~~G~i~~~g~~   74 (330)
T PRK15093          3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGS--GKSLI------AKAICGVTKDNWRVTADRMRFDDID   74 (330)
T ss_pred             eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCC--CHHHH------HHHHHccCCCCCCCcceEEEECCEE
Confidence            456899999996544556799999999988      999999  56655      569999997    589999999998


Q ss_pred             CCC-chHH----hcccEEEEccCCC--CCCCCCHHHHHHHhHhhc---C---CChHHHHHHHHHHHHHcCCCc---ccCC
Q psy7365         119 IRT-DMTT----IRRSLGVCPQYNA--LFDKLTVEEHMWFYSQLK---Q---VPKDLAQLEISNMIGDLGIPH---KRTS  182 (601)
Q Consensus       119 ~~~-~~~~----~~~~ig~v~Q~~~--~~~~~tv~e~l~~~~~~~---~---~~~~~~~~~~~~~l~~~gl~~---~~~~  182 (601)
                      +.. ....    .++.++||||+|.  +++.+||.+++.+....+   +   ....+.+.++.++++.+||.+   ..++
T Consensus        75 i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~  154 (330)
T PRK15093         75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRS  154 (330)
T ss_pred             CCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhC
Confidence            854 2221    2357999999985  678899999998643321   1   112345667899999999985   3589


Q ss_pred             ccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcch
Q psy7365         183 LANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTS  262 (601)
Q Consensus       183 ~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  262 (601)
                      ++.+|||||||||+||+||                                      +.+                    
T Consensus       155 ~p~~LSgG~~QRv~iArAL--------------------------------------~~~--------------------  176 (330)
T PRK15093        155 FPYELTEGECQKVMIAIAL--------------------------------------ANQ--------------------  176 (330)
T ss_pred             CchhCCHHHHHHHHHHHHH--------------------------------------HCC--------------------
Confidence            9999999999999854432                                      233                    


Q ss_pred             hHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcc
Q psy7365         263 ILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL  342 (601)
Q Consensus       263 ~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkI  342 (601)
                                     |++|||||||++||+.++..++++|+++.    +..|.|+|++|||++++..+|||+++|.+|++
T Consensus       177 ---------------P~llilDEPts~LD~~~~~~i~~lL~~l~----~~~g~tii~itHdl~~v~~~~dri~vm~~G~i  237 (330)
T PRK15093        177 ---------------PRLLIADEPTNAMEPTTQAQIFRLLTRLN----QNNNTTILLISHDLQMLSQWADKINVLYCGQT  237 (330)
T ss_pred             ---------------CCEEEEeCCCCcCCHHHHHHHHHHHHHHH----HhcCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence                           58999999999999999999999999984    23489999999999999999999999999999


Q ss_pred             ccccCc
Q psy7365         343 QCCGSS  348 (601)
Q Consensus       343 v~~G~~  348 (601)
                      +..|+.
T Consensus       238 ve~g~~  243 (330)
T PRK15093        238 VETAPS  243 (330)
T ss_pred             EEECCH
Confidence            988764

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.1e-37  Score=308.77  Aligned_cols=208  Identities=24%  Similarity=0.345  Sum_probs=172.3

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      +..+++|++.|++    .++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++...
T Consensus         5 ~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~G~~~p~~G~i~~~g~~~~~~   72 (237)
T PRK11614          5 MLSFDKVSAHYGK----IQALHEVSLHINQGEIVTLIGANGA--GKTTL------LGTLCGDPRATSGRIVFDGKDITDW   72 (237)
T ss_pred             EEEEEeEEEeeCC----ceeeeeeEEEEcCCcEEEEECCCCC--CHHHH------HHHHcCCCCCCCceEEECCEecCCC
Confidence            4568999999853    4599999999988      999999  56665      5799999999999999999987542


Q ss_pred             -hH-HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHc-CCCcccCCccccCChHHHhhhhchh
Q psy7365         123 -MT-TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDL-GIPHKRTSLANTLSGGMQRKLDNVK  199 (601)
Q Consensus       123 -~~-~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~LSgG~~qr~~~~~  199 (601)
                       .. ..++.+||+||++.+|+.+||.||+.+.....  ...+...++.++++.+ ++.+..++++.+||||||||+++||
T Consensus        73 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~  150 (237)
T PRK11614         73 QTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGR  150 (237)
T ss_pred             CHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHH
Confidence             22 34678999999999999999999998864322  2233445677888888 5887788899999999999997544


Q ss_pred             hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365         200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS  279 (601)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  279 (601)
                      ++                                      +.+                                   |+
T Consensus       151 al--------------------------------------~~~-----------------------------------p~  157 (237)
T PRK11614        151 AL--------------------------------------MSQ-----------------------------------PR  157 (237)
T ss_pred             HH--------------------------------------HhC-----------------------------------CC
Confidence            32                                      222                                   58


Q ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      ++||||||+|||+.++..+++.|+++.     .+|.|+|++||+++++.++|||+++|.+|+++..++.
T Consensus       158 illlDEPt~~LD~~~~~~l~~~l~~~~-----~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~  221 (237)
T PRK11614        158 LLLLDEPSLGLAPIIIQQIFDTIEQLR-----EQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTG  221 (237)
T ss_pred             EEEEcCccccCCHHHHHHHHHHHHHHH-----HCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCH
Confidence            999999999999999999999999873     3589999999999999999999999999999877654

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=100.00  E-value=1e-36  Score=302.52  Aligned_cols=203  Identities=24%  Similarity=0.396  Sum_probs=168.4

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTT  125 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~  125 (601)
                      +++|+++|+.      .+.|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|+++... ..
T Consensus         3 ~~~l~~~~~~------~~~~~s~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~g~~~~~~-~~   67 (213)
T TIGR01277         3 LDKVRYEYEH------LPMEFDLNVADGEIVAIMGPSGA--GKSTL------LNLIAGFIEPASGSIKVNDQSHTGL-AP   67 (213)
T ss_pred             EEeeeEEeCC------cceeeEEEEeCCcEEEEECCCCC--CHHHH------HHHHhcCCCCCCcEEEECCEEcccC-Ch
Confidence            7899999852      35799999988      999999  56665      5799999999999999999987542 23


Q ss_pred             hcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchh
Q psy7365         126 IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNK  205 (601)
Q Consensus       126 ~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~  205 (601)
                      .++.+||+||++.+|+.+|+.||+.+........+...+.++.++++.+|+.+..++.+.+||||||||+++||+++   
T Consensus        68 ~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~---  144 (213)
T TIGR01277        68 YQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLV---  144 (213)
T ss_pred             hccceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHh---
Confidence            46789999999999999999999987543221122234567888999999998899999999999999997544322   


Q ss_pred             hHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEec
Q psy7365         206 AWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDE  285 (601)
Q Consensus       206 ~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDE  285 (601)
                                                         .                                   +|+++||||
T Consensus       145 -----------------------------------~-----------------------------------~p~llllDE  154 (213)
T TIGR01277       145 -----------------------------------R-----------------------------------PNPILLLDE  154 (213)
T ss_pred             -----------------------------------c-----------------------------------CCCEEEEcC
Confidence                                               2                                   358999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccccc
Q psy7365         286 PTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  346 (601)
Q Consensus       286 PtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G  346 (601)
                      ||+|||+.++..++++|.++.    +..|.|+|++||+.+++..+||++++|.+|++...|
T Consensus       155 Pt~~LD~~~~~~~~~~l~~~~----~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~  211 (213)
T TIGR01277       155 PFSALDPLLREEMLALVKQLC----SERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS  211 (213)
T ss_pred             CCccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEec
Confidence            999999999999999999873    224899999999999999999999999999987654

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-36  Score=310.36  Aligned_cols=208  Identities=23%  Similarity=0.332  Sum_probs=173.7

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCC-----CeeEEEEccc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPV-----SSGTAKIYDH  117 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~-----~~G~v~~~g~  117 (601)
                      ...++++++.|++    .++++|+||++.+      +||||+  |||||      .++|+|+++|     ++|+|.++|.
T Consensus        12 ~l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~i~Gl~~~~~~~~~~G~i~~~g~   79 (258)
T PRK14268         12 QIKVENLNLWYGE----KQALKNVSMQIPKNSVTALIGPSGC--GKSTF------IRCLNRMNDLIKNCRIEGKVSIEGE   79 (258)
T ss_pred             eEEEeeeEEEeCC----eeeeeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCCCcccCCCcceEEEECCE
Confidence            4568999999863    4599999999988      999999  56665      5799999985     8999999999


Q ss_pred             cCCCc---hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC----cccCCccccCChH
Q psy7365         118 DIRTD---MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP----HKRTSLANTLSGG  190 (601)
Q Consensus       118 ~~~~~---~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgG  190 (601)
                      ++...   ....++.+||+||++.+|+ +|++||+.|.....+.+......++.++++.+|+.    +..++++.+||||
T Consensus        80 ~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG  158 (258)
T PRK14268         80 DIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGG  158 (258)
T ss_pred             EcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHH
Confidence            87531   2345678999999998887 89999999876666665555566788999999984    4578899999999


Q ss_pred             HHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHH
Q psy7365         191 MQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVL  270 (601)
Q Consensus       191 ~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~  270 (601)
                      ||||+++||+|+                                      .+                            
T Consensus       159 ~~qrv~laral~--------------------------------------~~----------------------------  172 (258)
T PRK14268        159 QQQRLCIARTLA--------------------------------------VK----------------------------  172 (258)
T ss_pred             HHHHHHHHHHHH--------------------------------------cC----------------------------
Confidence            999998654332                                      22                            


Q ss_pred             HhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         271 FAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       271 ~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                             |+++||||||+|||+.++..++++|+++.      +|+|||++||+++++..+||++++|.+|+++..+.+
T Consensus       173 -------p~llllDEPt~~LD~~~~~~l~~~l~~l~------~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~  237 (258)
T PRK14268        173 -------PKIILFDEPTSALDPISTARIEDLIMNLK------KDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQT  237 (258)
T ss_pred             -------CCEEEEeCCCcccCHHHHHHHHHHHHHHh------hCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence                   58999999999999999999999999872      378999999999999999999999999999876653

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=1.1e-36  Score=312.33  Aligned_cols=214  Identities=21%  Similarity=0.277  Sum_probs=175.6

Q ss_pred             hhhcccccccccCC-----CccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEcccc
Q psy7365          50 SLFESLSENRDKLG-----IDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHD  118 (601)
Q Consensus        50 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~  118 (601)
                      ..+++|++.|+..+     ...++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.+
T Consensus         3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~   74 (265)
T TIGR02769         3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGC--GKSTL------ARLLLGLEKPAQGTVSFRGQD   74 (265)
T ss_pred             EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCcEEEECCEE
Confidence            45889999985321     246799999999988      999999  56665      679999999999999999998


Q ss_pred             CCCc-h---HHhcccEEEEccCC--CCCCCCCHHHHHHHhHhhc-CCChHHHHHHHHHHHHHcCCC-cccCCccccCChH
Q psy7365         119 IRTD-M---TTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIGDLGIP-HKRTSLANTLSGG  190 (601)
Q Consensus       119 ~~~~-~---~~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG  190 (601)
                      +... .   ...++.+||+||++  .+++.+||.||+.+..... ++.....+.++.++++.+|+. ...++++.+||||
T Consensus        75 i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG  154 (265)
T TIGR02769        75 LYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGG  154 (265)
T ss_pred             ccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHH
Confidence            7532 1   22467899999997  3677899999998765533 444445566788999999996 6789999999999


Q ss_pred             HHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHH
Q psy7365         191 MQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVL  270 (601)
Q Consensus       191 ~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~  270 (601)
                      ||||+++||||+                                      ++                            
T Consensus       155 e~qrv~laral~--------------------------------------~~----------------------------  168 (265)
T TIGR02769       155 QLQRINIARALA--------------------------------------VK----------------------------  168 (265)
T ss_pred             HHHHHHHHHHHh--------------------------------------cC----------------------------
Confidence            999998654332                                      33                            


Q ss_pred             HhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         271 FAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       271 ~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                             |++|||||||+|||+.++..+++.|+++.    +..|+|||++||+++++..+||++++|.+|+++..++.
T Consensus       169 -------p~illLDEPt~~LD~~~~~~l~~~l~~~~----~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~  235 (265)
T TIGR02769       169 -------PKLIVLDEAVSNLDMVLQAVILELLRKLQ----QAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV  235 (265)
T ss_pred             -------CCEEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCH
Confidence                   58999999999999999999999999873    22489999999999999999999999999999877654

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=1.8e-37  Score=292.86  Aligned_cols=204  Identities=23%  Similarity=0.353  Sum_probs=169.0

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTT  125 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~  125 (601)
                      +.++++.|+...      =..++.|..      +||||+  |||||      .++|+|+..|.+|+|.++|.+.+... .
T Consensus         4 L~~V~~~y~~~~------~~fdl~v~~ge~vAi~GpSGa--GKSTL------LnLIAGF~~P~~G~i~i~g~d~t~~~-P   68 (231)
T COG3840           4 LDDVRFSYGHLP------MRFDLTVPAGEIVAILGPSGA--GKSTL------LNLIAGFETPASGEILINGVDHTASP-P   68 (231)
T ss_pred             ccceEEeeCcce------EEEEEeecCCcEEEEECCCCc--cHHHH------HHHHHhccCCCCceEEEcCeecCcCC-c
Confidence            567777776554      123344433      999999  57665      67999999999999999999986432 2


Q ss_pred             hcccEEEEccCCCCCCCCCHHHHHHHhHhh-cCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcch
Q psy7365         126 IRRSLGVCPQYNALFDKLTVEEHMWFYSQL-KQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNN  204 (601)
Q Consensus       126 ~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~  204 (601)
                      ..+.+.++||++.+|.++||.+|+.++..- ..+. .+.+++++.++..+||..+.+|.|.+|||||||||++||+++.+
T Consensus        69 ~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~-a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~  147 (231)
T COG3840          69 AERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLN-AEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVRE  147 (231)
T ss_pred             ccCChhhhhhccccchhhhhhhhhcccCCcccccC-HHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhcc
Confidence            356899999999999999999999987643 2233 45577899999999999999999999999999999876644333


Q ss_pred             hhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEe
Q psy7365         205 KAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILD  284 (601)
Q Consensus       205 ~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLD  284 (601)
                                                                                               -++++||
T Consensus       148 -------------------------------------------------------------------------~PilLLD  154 (231)
T COG3840         148 -------------------------------------------------------------------------QPILLLD  154 (231)
T ss_pred             -------------------------------------------------------------------------CCeEEec
Confidence                                                                                     1499999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         285 EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       285 EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      ||+|+|||.-|.++..++.++.    .+++.|++++||..+.+.+++||++++++|+|.+.|..
T Consensus       155 EPFsALdP~LR~eMl~Lv~~l~----~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~  214 (231)
T COG3840         155 EPFSALDPALRAEMLALVSQLC----DERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGST  214 (231)
T ss_pred             CchhhcCHHHHHHHHHHHHHHH----HhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccH
Confidence            9999999999999999999984    45789999999999999999999999999999988754

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.2e-36  Score=309.41  Aligned_cols=208  Identities=21%  Similarity=0.325  Sum_probs=174.6

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc--
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD--  122 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~--  122 (601)
                      .+++|++.|++    .++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++...  
T Consensus         2 ~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~g~~i~~~~~   69 (252)
T TIGR03005         2 RFSDVTKRFGI----LTVLDGLNFSVAAGEKVALIGPSGS--GKSTI------LRILMTLEPIDEGQIQVEGEQLYHMPG   69 (252)
T ss_pred             EEEEEEEEeCC----eeEEeeeeEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCceEEEECCEEcccccc
Confidence            37899999863    3599999999988      999999  56665      5799999999999999999987421  


Q ss_pred             ------------hHHhcccEEEEccCCCCCCCCCHHHHHHHhHh-hcCCChHHHHHHHHHHHHHcCCCcccCCccccCCh
Q psy7365         123 ------------MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ-LKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSG  189 (601)
Q Consensus       123 ------------~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg  189 (601)
                                  ....++.++|+||++.+|+..|+.||+.++.. ..+.+......++.++++.+|+.+..++.+.+|||
T Consensus        70 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~  149 (252)
T TIGR03005        70 RNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSG  149 (252)
T ss_pred             ccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCH
Confidence                        12456789999999999999999999987542 33455555667788999999999999999999999


Q ss_pred             HHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHH
Q psy7365         190 GMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTV  269 (601)
Q Consensus       190 G~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~  269 (601)
                      ||+||+++||+|                                      +.+                           
T Consensus       150 G~~qrv~laral--------------------------------------~~~---------------------------  164 (252)
T TIGR03005       150 GQQQRVAIARAL--------------------------------------AMR---------------------------  164 (252)
T ss_pred             HHHHHHHHHHHH--------------------------------------HcC---------------------------
Confidence            999999754432                                      232                           


Q ss_pred             HHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         270 LFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       270 ~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                              |+++||||||+|||+.++..++++|+++.    +..|.|+|++||+++++..+||++++|.+|+++..++
T Consensus       165 --------p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~  230 (252)
T TIGR03005       165 --------PKVMLFDEVTSALDPELVGEVLNVIRRLA----SEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK  230 (252)
T ss_pred             --------CCEEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence                    58999999999999999999999999873    2248999999999999999999999999999887664

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=100.00  E-value=1.1e-36  Score=312.93  Aligned_cols=214  Identities=19%  Similarity=0.269  Sum_probs=175.0

Q ss_pred             hhhhcccccccccCC-----CccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccc
Q psy7365          49 VSLFESLSENRDKLG-----IDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDH  117 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~  117 (601)
                      +..++||++.|++..     ++.++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~   75 (267)
T PRK15112          4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGS--GKSTL------AKMLAGMIEPTSGELLIDDH   75 (267)
T ss_pred             eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCC--CHHHH------HHHHhCCCCCCCCEEEECCE
Confidence            355899999996432     235799999999988      999999  56665      67999999999999999999


Q ss_pred             cCCCc-hHHhcccEEEEccCCC--CCCCCCHHHHHHHhHhhc-CCChHHHHHHHHHHHHHcCCC-cccCCccccCChHHH
Q psy7365         118 DIRTD-MTTIRRSLGVCPQYNA--LFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIGDLGIP-HKRTSLANTLSGGMQ  192 (601)
Q Consensus       118 ~~~~~-~~~~~~~ig~v~Q~~~--~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~  192 (601)
                      ++... ....++.+||+||++.  +++.+|+.+++.+..... +....+..+++.++++.+|+. ...++++.+||||||
T Consensus        76 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~  155 (267)
T PRK15112         76 PLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQK  155 (267)
T ss_pred             ECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHH
Confidence            88532 2334567999999985  677889999998865532 444455566788999999994 677889999999999


Q ss_pred             hhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHh
Q psy7365         193 RKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFA  272 (601)
Q Consensus       193 qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  272 (601)
                      ||+++|++|                                      +.+                              
T Consensus       156 qrv~laral--------------------------------------~~~------------------------------  167 (267)
T PRK15112        156 QRLGLARAL--------------------------------------ILR------------------------------  167 (267)
T ss_pred             HHHHHHHHH--------------------------------------HhC------------------------------
Confidence            999864432                                      222                              


Q ss_pred             hccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         273 MSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       273 ~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                           |+++||||||+|||+.++..++++|.++.    +..|.|||++||+++++..+||++++|.+|+++..++
T Consensus       168 -----p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~  233 (267)
T PRK15112        168 -----PKVIIADEALASLDMSMRSQLINLMLELQ----EKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS  233 (267)
T ss_pred             -----CCEEEEcCCcccCCHHHHHHHHHHHHHHH----HHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence                 58999999999999999999999999873    2248999999999999999999999999999876654

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=1.1e-36  Score=332.26  Aligned_cols=218  Identities=22%  Similarity=0.330  Sum_probs=184.9

Q ss_pred             cchhhhhcccccccccC-------CCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEE
Q psy7365          46 GAYVSLFESLSENRDKL-------GIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTA  112 (601)
Q Consensus        46 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v  112 (601)
                      +.++..++||+|.|...       .....|++||||++.+      .|+|||  |||||     + |+|+|+++|++|+|
T Consensus       277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGs--GKSTl-----a-r~i~gL~~P~~G~i  348 (539)
T COG1123         277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGS--GKSTL-----A-RILAGLLPPSSGSI  348 (539)
T ss_pred             cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCC--CHHHH-----H-HHHhCCCCCCCceE
Confidence            56677799999999742       2357899999999988      999999  56554     4 69999999999999


Q ss_pred             EEccccCC--C-chHHhcccEEEEccCC--CCCCCCCHHHHHHHhHhhcCC-ChHHHHHHHHHHHHHcCCCc-ccCCccc
Q psy7365         113 KIYDHDIR--T-DMTTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIGDLGIPH-KRTSLAN  185 (601)
Q Consensus       113 ~~~g~~~~--~-~~~~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~-~~~~~~~  185 (601)
                      .++|.++.  . .....|+++-++||+|  .+.|.+||.+++...+..++. ...+.++++.++++.+||+. ..+++|+
T Consensus       349 ~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~  428 (539)
T COG1123         349 IFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPH  428 (539)
T ss_pred             EEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCch
Confidence            99998832  1 2344677899999998  599999999999988876653 34566678999999999997 6999999


Q ss_pred             cCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHH
Q psy7365         186 TLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILV  265 (601)
Q Consensus       186 ~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  265 (601)
                      +||||||||++|||||                                      +.                        
T Consensus       429 elSGGQrQRvaIARAL--------------------------------------a~------------------------  446 (539)
T COG1123         429 ELSGGQRQRVAIARAL--------------------------------------AL------------------------  446 (539)
T ss_pred             hcCcchhHHHHHHHHH--------------------------------------hc------------------------
Confidence            9999999999865432                                      22                        


Q ss_pred             HHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc
Q psy7365         266 AVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  345 (601)
Q Consensus       266 a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~  345 (601)
                                 .|+++|+|||||.||+..+..+.++|++++    ++.|.|.||+|||+.++..+||||++|.+|+|+..
T Consensus       447 -----------~P~lli~DEp~SaLDvsvqa~VlnLl~~lq----~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~  511 (539)
T COG1123         447 -----------EPKLLILDEPVSALDVSVQAQVLNLLKDLQ----EELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEE  511 (539)
T ss_pred             -----------CCCEEEecCCccccCHHHHHHHHHHHHHHH----HHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEe
Confidence                       269999999999999999999999999995    34699999999999999999999999999999998


Q ss_pred             cCc
Q psy7365         346 GSS  348 (601)
Q Consensus       346 G~~  348 (601)
                      |..
T Consensus       512 G~~  514 (539)
T COG1123         512 GPT  514 (539)
T ss_pred             CCH
Confidence            854

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=9.5e-37  Score=325.41  Aligned_cols=202  Identities=20%  Similarity=0.353  Sum_probs=168.8

Q ss_pred             ccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc-----
Q psy7365          54 SLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD-----  122 (601)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~-----  122 (601)
                      +|+|.|++.     .+ |+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++...     
T Consensus         4 ~l~~~~~~~-----~~-~isl~i~~Gei~~l~G~nGs--GKSTL------l~~iaGl~~p~~G~I~~~g~~i~~~~~~~~   69 (354)
T TIGR02142         4 RFSKRLGDF-----SL-DADFTLPGQGVTAIFGRSGS--GKTTL------IRLIAGLTRPDEGEIVLNGRTLFDSRKGIF   69 (354)
T ss_pred             EEEEEECCE-----EE-EEEEEECCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCceEEEECCEECccCccccc
Confidence            688888642     24 89999987      999999  56665      5799999999999999999987532     


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhc
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWF  202 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~  202 (601)
                      ....++.+||+||++.+|+++||.||+.|+....  +..+.+.++.++++.+||.+..++++.+||||||||+++|||| 
T Consensus        70 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL-  146 (354)
T TIGR02142        70 LPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRAL-  146 (354)
T ss_pred             cchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH-
Confidence            1234678999999999999999999999876532  2334456788999999999999999999999999999865432 


Q ss_pred             chhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEE
Q psy7365         203 NNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVI  282 (601)
Q Consensus       203 ~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~li  282 (601)
                                                           +.+                                   |+++|
T Consensus       147 -------------------------------------~~~-----------------------------------p~lll  154 (354)
T TIGR02142       147 -------------------------------------LSS-----------------------------------PRLLL  154 (354)
T ss_pred             -------------------------------------HcC-----------------------------------CCEEE
Confidence                                                 233                                   58999


Q ss_pred             EecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       283 LDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      |||||+|||+.++..+++.|+++.    +..|+|+|++||+++++..+||++++|.+|++...+++
T Consensus       155 LDEPts~LD~~~~~~l~~~L~~l~----~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~  216 (354)
T TIGR02142       155 MDEPLAALDDPRKYEILPYLERLH----AEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPI  216 (354)
T ss_pred             EcCCCcCCCHHHHHHHHHHHHHHH----HhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCH
Confidence            999999999999999999999873    23489999999999999999999999999999877654

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-36  Score=315.35  Aligned_cols=214  Identities=22%  Similarity=0.355  Sum_probs=174.7

Q ss_pred             hhhcccccccccCC-CccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365          50 SLFESLSENRDKLG-IDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-  121 (601)
Q Consensus        50 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-  121 (601)
                      ..++||++.|++.. ....+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. 
T Consensus         7 l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~i~~~   78 (289)
T PRK13645          7 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGS--GKSTM------IQLTNGLIISETGQTIVGDYAIPAN   78 (289)
T ss_pred             EEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCceEEECCEEcccc
Confidence            34899999986422 124599999999988      999999  56665      679999999999999999998742 


Q ss_pred             -----chHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC-cccCCccccCChHHHhh
Q psy7365         122 -----DMTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP-HKRTSLANTLSGGMQRK  194 (601)
Q Consensus       122 -----~~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qr  194 (601)
                           +....++.+||+||++. .++..|+.||+.|+....+...++...++.++++.++|. +..++++.+||||||||
T Consensus        79 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qr  158 (289)
T PRK13645         79 LKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRR  158 (289)
T ss_pred             ccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHH
Confidence                 23445678999999984 233469999999876555555555667788999999995 67899999999999999


Q ss_pred             hhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhc
Q psy7365         195 LDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMS  274 (601)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  274 (601)
                      +++||||+                                      .+                                
T Consensus       159 v~laral~--------------------------------------~~--------------------------------  168 (289)
T PRK13645        159 VALAGIIA--------------------------------------MD--------------------------------  168 (289)
T ss_pred             HHHHHHHH--------------------------------------hC--------------------------------
Confidence            98654332                                      22                                


Q ss_pred             cCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         275 FVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       275 ~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                         |++|||||||+|||+.++..++++|+++.    +..|+|||++||+++++..+||++++|.+|+++..++.
T Consensus       169 ---p~lLlLDEPt~~LD~~~~~~l~~~l~~~~----~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~  235 (289)
T PRK13645        169 ---GNTLVLDEPTGGLDPKGEEDFINLFERLN----KEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSP  235 (289)
T ss_pred             ---CCEEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence               58999999999999999999999999873    22489999999999999999999999999998876643

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-36  Score=308.91  Aligned_cols=209  Identities=24%  Similarity=0.355  Sum_probs=172.8

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCC-----CeeEEEEccc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPV-----SSGTAKIYDH  117 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~-----~~G~v~~~g~  117 (601)
                      +..+++|++.|++    .++++|+||++.+      +|||||  |||||      .++|+|+++|     ++|+|+++|.
T Consensus         4 ~l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~nGs--GKSTL------l~~l~G~~~~~~~~~~~G~i~~~g~   71 (253)
T PRK14267          4 AIETVNLRVYYGS----NHVIKGVDLKIPQNGVFALMGPSGC--GKSTL------LRTFNRLLELNEEARVEGEVRLFGR   71 (253)
T ss_pred             eEEEEeEEEEeCC----eeeeecceEEEcCCCEEEEECCCCC--CHHHH------HHHHhccCCcccCCCCceEEEECCE
Confidence            3458999999864    3599999999988      999999  56665      5799999987     4999999999


Q ss_pred             cCCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCC--ChHHHHHHHHHHHHHcCCC----cccCCccccCC
Q psy7365         118 DIRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV--PKDLAQLEISNMIGDLGIP----HKRTSLANTLS  188 (601)
Q Consensus       118 ~~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LS  188 (601)
                      ++..   .....++.+||+||++.+|+.+||.||+.++....+.  +.+....++.++++.+|+.    ...++++.+||
T Consensus        72 ~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS  151 (253)
T PRK14267         72 NIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLS  151 (253)
T ss_pred             EccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCC
Confidence            8852   2334567899999999999999999999987654332  3445556788999999984    35788999999


Q ss_pred             hHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHH
Q psy7365         189 GGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVT  268 (601)
Q Consensus       189 gG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~  268 (601)
                      ||||||+++||++                                      +.                           
T Consensus       152 ~G~~qrv~laral--------------------------------------~~---------------------------  166 (253)
T PRK14267        152 GGQRQRLVIARAL--------------------------------------AM---------------------------  166 (253)
T ss_pred             HHHHHHHHHHHHH--------------------------------------hc---------------------------
Confidence            9999999854432                                      22                           


Q ss_pred             HHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         269 VLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       269 ~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                              +|+++||||||+|||+.++..+++.|+++.      +++|+|++||+++++..+||++++|.+|+++..+++
T Consensus       167 --------~p~llllDEP~~~LD~~~~~~l~~~l~~~~------~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~  232 (253)
T PRK14267        167 --------KPKILLMDEPTANIDPVGTAKIEELLFELK------KEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPT  232 (253)
T ss_pred             --------CCCEEEEcCCCccCCHHHHHHHHHHHHHHh------hCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence                    258999999999999999999999999872      258999999999999999999999999999876653

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=100.00  E-value=1.9e-36  Score=303.19  Aligned_cols=210  Identities=23%  Similarity=0.335  Sum_probs=173.0

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCC---CCeeEEEEcccc
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLP---VSSGTAKIYDHD  118 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~---~~~G~v~~~g~~  118 (601)
                      |+..++++++.|.+.++..++++|+||++.+      +|||||  |||||      .++|+|+++   |++|+|.++|.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGs--GKSTL------lk~l~G~~~~~~~~~G~i~~~g~~   73 (226)
T cd03234           2 RVLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGS--GKTTL------LDAISGRVEGGGTTSGQILFNGQP   73 (226)
T ss_pred             ccceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCC--CHHHH------HHHHhCccCCCCCCceEEEECCEE
Confidence            3445889999986555567899999999988      999999  56665      579999999   999999999998


Q ss_pred             CCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCC---ChHHHHHHHHH-HHHHcCCCcccCCccccCChHHHhh
Q psy7365         119 IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV---PKDLAQLEISN-MIGDLGIPHKRTSLANTLSGGMQRK  194 (601)
Q Consensus       119 ~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~~~-~l~~~gl~~~~~~~~~~LSgG~~qr  194 (601)
                      +..  ...++.+||+||++.+|+.+||.||+.|+....+.   .......++.+ .++.+++++..++.+.+|||||+||
T Consensus        74 ~~~--~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr  151 (226)
T cd03234          74 RKP--DQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRR  151 (226)
T ss_pred             CCh--HHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHH
Confidence            742  34577899999999999999999999987654321   22222334555 8999999998999999999999999


Q ss_pred             hhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhc
Q psy7365         195 LDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMS  274 (601)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  274 (601)
                      +++||+|+                                      .                                 
T Consensus       152 l~laral~--------------------------------------~---------------------------------  160 (226)
T cd03234         152 VSIAVQLL--------------------------------------W---------------------------------  160 (226)
T ss_pred             HHHHHHHH--------------------------------------h---------------------------------
Confidence            98654322                                      2                                 


Q ss_pred             cCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecch-hHHHhcCCEEEEecCCccccc
Q psy7365         275 FVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYM-DEADLLGDRIAIIAAGKLQCC  345 (601)
Q Consensus       275 ~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl-~~~~~l~Drv~vL~~GkIv~~  345 (601)
                        +|+++||||||+|||+.++..++++|+++.     ..|.|+|++||++ +++..+||++++|.+|+++..
T Consensus       161 --~p~illlDEP~~gLD~~~~~~~~~~l~~~~-----~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~  225 (226)
T cd03234         161 --DPKVLILDEPTSGLDSFTALNLVSTLSQLA-----RRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYS  225 (226)
T ss_pred             --CCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-----HCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEec
Confidence              258999999999999999999999999873     3488999999999 589999999999999998754

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-36  Score=308.76  Aligned_cols=208  Identities=24%  Similarity=0.337  Sum_probs=172.3

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCC-----CeeEEEEccc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPV-----SSGTAKIYDH  117 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~-----~~G~v~~~g~  117 (601)
                      +..++++++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|     ++|+|.++|.
T Consensus         7 ~l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~~~~~~~~~G~i~~~g~   74 (254)
T PRK14273          7 IIETENLNLFYTD----FKALNNINIKILKNSITALIGPSGC--GKSTF------LRTLNRMNDLVEGIKIEGNVIYEGK   74 (254)
T ss_pred             eEEEeeeEEEeCC----ceeecceeeEEcCCCEEEEECCCCC--CHHHH------HHHHhccccCCcCCCCceEEEECCE
Confidence            4569999999864    3489999999988      999999  56665      5799999997     5999999999


Q ss_pred             cCCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCC-ChHHHHHHHHHHHHHcCC----CcccCCccccCCh
Q psy7365         118 DIRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIGDLGI----PHKRTSLANTLSG  189 (601)
Q Consensus       118 ~~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl----~~~~~~~~~~LSg  189 (601)
                      ++..   .....++.+||+||++.+|+ +||+||+.|+....+. .....+.++.++++.+|+    .+..++++.+|||
T Consensus        75 ~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg  153 (254)
T PRK14273         75 NIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSG  153 (254)
T ss_pred             ecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCH
Confidence            8742   23345778999999998884 9999999987655443 334456778899999997    4557889999999


Q ss_pred             HHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHH
Q psy7365         190 GMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTV  269 (601)
Q Consensus       190 G~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~  269 (601)
                      |||||+++||+|                                      +.+                           
T Consensus       154 G~~qrv~laral--------------------------------------~~~---------------------------  168 (254)
T PRK14273        154 GQQQRLCIARTL--------------------------------------AIE---------------------------  168 (254)
T ss_pred             HHHHHHHHHHHH--------------------------------------HcC---------------------------
Confidence            999999865432                                      222                           


Q ss_pred             HHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         270 LFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       270 ~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                              |+++||||||+|||+.++..++++|+++.      ++.|+|++||+++++..+|||+++|.+|+++..+..
T Consensus       169 --------p~lllLDEPt~~LD~~~~~~l~~~l~~~~------~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~  233 (254)
T PRK14273        169 --------PNVILMDEPTSALDPISTGKIEELIINLK------ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESST  233 (254)
T ss_pred             --------CCEEEEeCCCcccCHHHHHHHHHHHHHHh------cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence                    58999999999999999999999999872      368999999999999999999999999999877653

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-36  Score=312.05  Aligned_cols=212  Identities=20%  Similarity=0.212  Sum_probs=174.8

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT  121 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~  121 (601)
                      ++..+++|++.|++    .++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++..
T Consensus        10 ~~l~i~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~~~~G~i~~~g~~~~~   77 (265)
T PRK10575         10 TTFALRNVSFRVPG----RTLLHPLSLTFPAGKVTGLIGHNGS--GKSTL------LKMLGRHQPPSEGEILLDAQPLES   77 (265)
T ss_pred             ceEEEeeEEEEECC----EEEEeeeeeEEcCCCEEEEECCCCC--CHHHH------HHHHcCCCCCCCCEEEECCEehhh
Confidence            34569999999853    3599999999988      999999  56655      579999999999999999998743


Q ss_pred             -chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhc----CCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhh
Q psy7365         122 -DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK----QVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD  196 (601)
Q Consensus       122 -~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~  196 (601)
                       .....++.++|+||++.+++.+|+.||+.++....    +..+.....++.++++.+|+.+..++++.+||||||||++
T Consensus        78 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~  157 (265)
T PRK10575         78 WSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAW  157 (265)
T ss_pred             CCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHH
Confidence             33445678999999998889999999998753211    1122334567889999999998899999999999999997


Q ss_pred             chhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccC
Q psy7365         197 NVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFV  276 (601)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  276 (601)
                      +||+|                                      +.+                                  
T Consensus       158 laral--------------------------------------~~~----------------------------------  165 (265)
T PRK10575        158 IAMLV--------------------------------------AQD----------------------------------  165 (265)
T ss_pred             HHHHH--------------------------------------hcC----------------------------------
Confidence            54432                                      222                                  


Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                       |+++||||||+|||+.+++.++++|.++.    +..|.|||++||+++++..+||++++|.+|+++..++.
T Consensus       166 -p~lllLDEPt~~LD~~~~~~~~~~l~~l~----~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~  232 (265)
T PRK10575        166 -SRCLLLDEPTSALDIAHQVDVLALVHRLS----QERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTP  232 (265)
T ss_pred             -CCEEEEcCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCH
Confidence             58999999999999999999999999873    22489999999999999999999999999999876643

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=2.2e-36  Score=314.59  Aligned_cols=206  Identities=34%  Similarity=0.564  Sum_probs=179.3

Q ss_pred             cEEEEEecchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCC--cccccccccCCCCcccCC
Q psy7365         315 RTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKS--APQKSYIGYCPQFDALND  385 (601)
Q Consensus       315 ~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~--~~~~~~ig~v~Q~~~l~~  385 (601)
                      ++++   .++++...-++.+++++...   .|+++++       +++.|+..+.|.+...  ...++++||+||++.+|+
T Consensus        18 ~~~l---~~vs~~i~~Gei~gllG~NG---AGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~   91 (293)
T COG1131          18 KTAL---DGVSFEVEPGEIFGLLGPNG---AGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYP   91 (293)
T ss_pred             CEEE---eceeEEEcCCeEEEEECCCC---CCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCc
Confidence            5666   88999999999999997522   4555443       3445666666666544  345788999999999999


Q ss_pred             CCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHH
Q psy7365         386 RLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGA  465 (601)
Q Consensus       386 ~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~  465 (601)
                      .+||+|++.|++.+++.+....+++++++++.++|.+..++++++||+||||||+||+||+++|+++||||||+||||.+
T Consensus        92 ~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~  171 (293)
T COG1131          92 ELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPES  171 (293)
T ss_pred             cccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHH
Confidence            99999999999999987755566789999999999987788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCC-cEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHhCCceE
Q psy7365         466 RRFLWTCIERAVSEG-RCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYS  526 (601)
Q Consensus       466 ~~~i~~lL~~l~~~G-~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~~~~~~  526 (601)
                      +.+++++|++++++| +||++|||.+++++.+||||++|++|++++.|+++++...+.....
T Consensus       172 ~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~~~~  233 (293)
T COG1131         172 RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGV  233 (293)
T ss_pred             HHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhccCce
Confidence            999999999999887 8999999999999999999999999999999999999888765433

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-36  Score=313.17  Aligned_cols=211  Identities=28%  Similarity=0.406  Sum_probs=176.0

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-  121 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-  121 (601)
                      +..++++++.|+.  ...++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++.. 
T Consensus         7 ~l~~~nl~~~~~~--~~~~il~~isl~i~~Ge~~~l~G~nGs--GKSTL------l~~l~Gl~~p~~G~I~~~g~~i~~~   76 (271)
T PRK13632          7 MIKVENVSFSYPN--SENNALKNVSFEINEGEYVAILGHNGS--GKSTI------SKILTGLLKPQSGEIKIDGITISKE   76 (271)
T ss_pred             EEEEEeEEEEcCC--CCccceeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCceEEECCEecCcC
Confidence            3558999999852  234689999999988      999999  56665      579999999999999999998854 


Q ss_pred             chHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh
Q psy7365         122 DMTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       122 ~~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                      +....++.+||+||++. .|+.+|+.||+.++....+.+.++.+.++.++++.+||.+..++++.+||||||||+++|||
T Consensus        77 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara  156 (271)
T PRK13632         77 NLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASV  156 (271)
T ss_pred             CHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHH
Confidence            33456778999999985 67789999999987665556656666778999999999999999999999999999975443


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      |                                      +.+                                   |++
T Consensus       157 l--------------------------------------~~~-----------------------------------p~l  163 (271)
T PRK13632        157 L--------------------------------------ALN-----------------------------------PEI  163 (271)
T ss_pred             H--------------------------------------HcC-----------------------------------CCE
Confidence            2                                      222                                   589


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                      +||||||+|||+.+++.++++|+++.    +..++|+|++||+++++. .||++++|.+|++...++
T Consensus       164 llLDEP~~gLD~~~~~~l~~~l~~~~----~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~  225 (271)
T PRK13632        164 IIFDESTSMLDPKGKREIKKIMVDLR----KTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGK  225 (271)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHH----HhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecC
Confidence            99999999999999999999999873    223589999999999986 799999999999876654

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-36  Score=308.08  Aligned_cols=209  Identities=25%  Similarity=0.303  Sum_probs=171.9

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCC-----CCeeEEEEcc
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLP-----VSSGTAKIYD  116 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~-----~~~G~v~~~g  116 (601)
                      ++..+++|++.|+.    .++++|+||++.+      +|||||  |||||      .++|+|+++     |++|+|.++|
T Consensus         5 ~~l~~~~l~~~~~~----~~il~~is~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~~~~~~~~~G~i~~~g   72 (253)
T PRK14242          5 PKMEARGLSFFYGD----FQALHDISLEFEQNQVTALIGPSGC--GKSTF------LRCLNRMNDLIPGARVEGEILLDG   72 (253)
T ss_pred             cEEEEeeeEEEECC----eeeecceeEEEeCCCEEEEECCCCC--CHHHH------HHHHHhhcccCCCCCCceEEEECC
Confidence            44569999999863    3599999999988      999999  56665      579999974     6899999999


Q ss_pred             ccCCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCC-ChHHHHHHHHHHHHHcCCCc----ccCCccccCC
Q psy7365         117 HDIRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIGDLGIPH----KRTSLANTLS  188 (601)
Q Consensus       117 ~~~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~----~~~~~~~~LS  188 (601)
                      +++..   .....++.+||+||++.+|+ .||.||+.|+....+. +.....+++.++++.+|+.+    ..++++.+||
T Consensus        73 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS  151 (253)
T PRK14242         73 ENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLS  151 (253)
T ss_pred             EEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCC
Confidence            98753   22345678999999998887 5999999987665554 23345667889999999853    4688899999


Q ss_pred             hHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHH
Q psy7365         189 GGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVT  268 (601)
Q Consensus       189 gG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~  268 (601)
                      ||||||+++||++                                      +.+                          
T Consensus       152 gGq~qrv~laral--------------------------------------~~~--------------------------  167 (253)
T PRK14242        152 GGQQQRLCIARAL--------------------------------------AVE--------------------------  167 (253)
T ss_pred             HHHHHHHHHHHHH--------------------------------------hcC--------------------------
Confidence            9999999754432                                      222                          


Q ss_pred             HHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         269 VLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       269 ~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                               |+++||||||+|||+.++..+++.|+++.      +|+|||++||+++++..+||++++|.+|+++..++.
T Consensus       168 ---------p~llllDEPt~~LD~~~~~~l~~~l~~~~------~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~  232 (253)
T PRK14242        168 ---------PEVLLMDEPASALDPIATQKIEELIHELK------ARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPT  232 (253)
T ss_pred             ---------CCEEEEeCCcccCCHHHHHHHHHHHHHHh------cCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCH
Confidence                     58999999999999999999999999872      368999999999999999999999999998876643

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=100.00  E-value=2.1e-36  Score=305.42  Aligned_cols=208  Identities=19%  Similarity=0.230  Sum_probs=169.7

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCC--CCCeeEEEEccccCCCc
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGML--PVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~--~~~~G~v~~~g~~~~~~  122 (601)
                      .+++|++.|++    .++++|+||++.+      +|||||  |||||      .++|+|++  +|++|+|.++|.++...
T Consensus         2 ~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~~~~~~G~i~~~g~~~~~~   69 (243)
T TIGR01978         2 KIKDLHVSVED----KEILKGVNLTVKKGEIHAIMGPNGS--GKSTL------SKTIAGHPSYEVTSGTILFKGQDLLEL   69 (243)
T ss_pred             eEeeEEEEECC----EEEEeccceEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCCcceEEECCEecCCC
Confidence            37899999863    4599999999988      999999  57665      67999995  79999999999987542


Q ss_pred             -hHH-hcccEEEEccCCCCCCCCCHHHHHHHhHhhcC-------CChHHHHHHHHHHHHHcCCC-cccCCccc-cCChHH
Q psy7365         123 -MTT-IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ-------VPKDLAQLEISNMIGDLGIP-HKRTSLAN-TLSGGM  191 (601)
Q Consensus       123 -~~~-~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~-------~~~~~~~~~~~~~l~~~gl~-~~~~~~~~-~LSgG~  191 (601)
                       ... .+..++|+||++.+|+.+|+.||+.+......       .+..+..+++.++++.+|+. ...++.+. +|||||
T Consensus        70 ~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~  149 (243)
T TIGR01978        70 EPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGE  149 (243)
T ss_pred             CHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHH
Confidence             222 34569999999999999999999988654321       12334456788999999997 46788887 599999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||+++||+|+                                      .+                             
T Consensus       150 ~qrl~la~al~--------------------------------------~~-----------------------------  162 (243)
T TIGR01978       150 KKRNEILQMAL--------------------------------------LE-----------------------------  162 (243)
T ss_pred             HHHHHHHHHHh--------------------------------------cC-----------------------------
Confidence            99998654332                                      22                             


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhc-CCEEEEecCCccccccCc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLL-GDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l-~Drv~vL~~GkIv~~G~~  348 (601)
                            |+++||||||+|||+.++..++++|+++.     .+|+|||++||+++++... ||++++|.+|++...++.
T Consensus       163 ------p~llllDEPt~~LD~~~~~~l~~~l~~~~-----~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~  229 (243)
T TIGR01978       163 ------PKLAILDEIDSGLDIDALKIVAEGINRLR-----EPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDV  229 (243)
T ss_pred             ------CCEEEecCCcccCCHHHHHHHHHHHHHHH-----HCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCH
Confidence                  58999999999999999999999999872     3589999999999999998 899999999998876644

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-36  Score=312.88  Aligned_cols=212  Identities=24%  Similarity=0.311  Sum_probs=178.2

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      ..+++|++.|++. ...++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++.. .
T Consensus         5 l~~~~l~~~~~~~-~~~~~l~~v~l~i~~Ge~~~I~G~nGs--GKSTL------l~~l~Gl~~~~~G~i~~~g~~i~~~~   75 (277)
T PRK13642          5 LEVENLVFKYEKE-SDVNQLNGVSFSITKGEWVSIIGQNGS--GKSTT------ARLIDGLFEEFEGKVKIDGELLTAEN   75 (277)
T ss_pred             EEEEEEEEEcCCC-CcCeeeeeeEEEEcCCCEEEEECCCCC--cHHHH------HHHHhcCCCCCCCEEEECCEECCcCC
Confidence            4589999998632 224589999999988      999999  56665      579999999999999999998854 2


Q ss_pred             hHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhh
Q psy7365         123 MTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVW  201 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~  201 (601)
                      ....++.+||+||++. +++..||.||+.++....+.++.+..+++.++++.+||.+..++++.+||||||||+++||||
T Consensus        76 ~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL  155 (277)
T PRK13642         76 VWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGII  155 (277)
T ss_pred             HHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence            3456778999999985 677899999999876655666666667889999999999999999999999999999865543


Q ss_pred             cchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEE
Q psy7365         202 FNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTV  281 (601)
Q Consensus       202 ~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~l  281 (601)
                      +                                      .+                                   |+++
T Consensus       156 ~--------------------------------------~~-----------------------------------p~ll  162 (277)
T PRK13642        156 A--------------------------------------LR-----------------------------------PEII  162 (277)
T ss_pred             H--------------------------------------cC-----------------------------------CCEE
Confidence            2                                      22                                   5899


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       282 iLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      ||||||+|||+.++..++++|.++.    +..|.|||++||+++++. .||++++|.+|+++..+..
T Consensus       163 llDEPt~~LD~~~~~~l~~~l~~l~----~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~  224 (277)
T PRK13642        163 ILDESTSMLDPTGRQEIMRVIHEIK----EKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAP  224 (277)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCH
Confidence            9999999999999999999999873    224899999999999987 6999999999999877653

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=100.00  E-value=2e-36  Score=298.23  Aligned_cols=195  Identities=24%  Similarity=0.341  Sum_probs=163.8

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC--c-
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT--D-  122 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~--~-  122 (601)
                      ++||++.|++    .++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++..  . 
T Consensus         1 i~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~g~~~~~~~~~   68 (206)
T TIGR03608         1 LKNISKKFGD----KIILDDLNLTIEKGKMYAIIGESGS--GKSTL------LNIIGLLEKFDSGQVYLNGKETPPLNSK   68 (206)
T ss_pred             CcceEEEECC----EEEEeceEEEEeCCcEEEEECCCCC--CHHHH------HHHHhcCCCCCCeEEEECCEEccccchh
Confidence            4688898853    4599999999988      999999  56665      679999999999999999998642  1 


Q ss_pred             --hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh
Q psy7365         123 --MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       123 --~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                        ....++.+||+||++.+|+.+|+.||+.|.....+.++.+..+++.++++.+|+.+..++++.+|||||+||+++||+
T Consensus        69 ~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~lara  148 (206)
T TIGR03608        69 KASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARA  148 (206)
T ss_pred             hHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHH
Confidence              123567899999999999999999999987665566556666788999999999999999999999999999975443


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      |                                      +.+                                   |++
T Consensus       149 l--------------------------------------~~~-----------------------------------p~l  155 (206)
T TIGR03608       149 I--------------------------------------LKD-----------------------------------PPL  155 (206)
T ss_pred             H--------------------------------------HcC-----------------------------------CCE
Confidence            2                                      233                                   589


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEe
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII  337 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL  337 (601)
                      +||||||+|||+.++..+++.|+++.     .+|.|+|++||++++. ..||++++|
T Consensus       156 lllDEPt~~LD~~~~~~l~~~l~~~~-----~~~~tii~~sh~~~~~-~~~d~i~~l  206 (206)
T TIGR03608       156 ILADEPTGSLDPKNRDEVLDLLLELN-----DEGKTIIIVTHDPEVA-KQADRVIEL  206 (206)
T ss_pred             EEEeCCcCCCCHHHHHHHHHHHHHHH-----hcCCEEEEEeCCHHHH-hhcCEEEeC
Confidence            99999999999999999999999872     3489999999999876 589999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-36  Score=310.21  Aligned_cols=208  Identities=24%  Similarity=0.304  Sum_probs=173.1

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      ..++++++.|++    .++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++.. +
T Consensus         3 l~~~~l~~~~~~----~~il~~is~~i~~Ge~~~l~G~nGs--GKSTL------l~~l~Gl~~~~~G~i~~~g~~~~~~~   70 (255)
T PRK11231          3 LRTENLTVGYGT----KRILNDLSLSLPTGKITALIGPNGC--GKSTL------LKCFARLLTPQSGTVFLGDKPISMLS   70 (255)
T ss_pred             EEEEeEEEEECC----EEEEeeeeeEEcCCcEEEEECCCCC--CHHHH------HHHHhCCcCCCCcEEEECCEEhHHCC
Confidence            348999999863    4699999999988      999999  56665      679999999999999999998743 2


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHh----hcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhch
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ----LKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNV  198 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~  198 (601)
                      ....++.+||+||++.+++.+|+.||+.|+..    .++..+.....++.++++.+|+.+..++++.+|||||+||+++|
T Consensus        71 ~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  150 (255)
T PRK11231         71 SRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLA  150 (255)
T ss_pred             HHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHH
Confidence            33456679999999998889999999988531    12322334456788999999999889999999999999999865


Q ss_pred             hhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCC
Q psy7365         199 KVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPA  278 (601)
Q Consensus       199 ~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  278 (601)
                      |||                                      +.+                                   |
T Consensus       151 ral--------------------------------------~~~-----------------------------------p  157 (255)
T PRK11231        151 MVL--------------------------------------AQD-----------------------------------T  157 (255)
T ss_pred             HHH--------------------------------------hcC-----------------------------------C
Confidence            432                                      233                                   5


Q ss_pred             cEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       279 ~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                      +++||||||+|||+.++..+++.|+++.     .+|+|+|++||+++++.++||++++|.+|++...+.
T Consensus       158 ~llllDEP~~~LD~~~~~~l~~~l~~l~-----~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~  221 (255)
T PRK11231        158 PVVLLDEPTTYLDINHQVELMRLMRELN-----TQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT  221 (255)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHH-----HCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcC
Confidence            8999999999999999999999999873     348999999999999999999999999999876654

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-36  Score=313.74  Aligned_cols=212  Identities=25%  Similarity=0.356  Sum_probs=178.7

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCe---eEEEEccccC
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSS---GTAKIYDHDI  119 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~---G~v~~~g~~~  119 (601)
                      +..+++|++.|+..  ..++++|+||++.+      +|||||  |||||      .++|+|+++|++   |+|.++|.++
T Consensus         5 ~l~i~~l~~~~~~~--~~~~l~~v~l~i~~Ge~~~I~G~nGa--GKSTL------l~~l~G~~~p~~g~~G~i~i~g~~~   74 (282)
T PRK13640          5 IVEFKHVSFTYPDS--KKPALNDISFSIPRGSWTALIGHNGS--GKSTI------SKLINGLLLPDDNPNSKITVDGITL   74 (282)
T ss_pred             eEEEEEEEEEcCCC--CccceeeEEEEEcCCCEEEEECCCCC--cHHHH------HHHHhcccCCCCCCCcEEEECCEEC
Confidence            34589999998532  24599999999988      999999  56665      579999999987   9999999988


Q ss_pred             CC-chHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhc
Q psy7365         120 RT-DMTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDN  197 (601)
Q Consensus       120 ~~-~~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~  197 (601)
                      .. .....++.+||+||++. +|+..||.||+.|.....+.++++.++++.++++.+||.+..++++.+|||||+||+++
T Consensus        75 ~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~l  154 (282)
T PRK13640         75 TAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAI  154 (282)
T ss_pred             CcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHH
Confidence            54 23445678999999985 77789999999987666677777777889999999999999999999999999999975


Q ss_pred             hhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCC
Q psy7365         198 VKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVP  277 (601)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  277 (601)
                      |+||                                      +.+                                   
T Consensus       155 aral--------------------------------------~~~-----------------------------------  161 (282)
T PRK13640        155 AGIL--------------------------------------AVE-----------------------------------  161 (282)
T ss_pred             HHHH--------------------------------------HcC-----------------------------------
Confidence            4432                                      232                                   


Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      |+++||||||+|||+.++..+++.|+++.    +..|+|||++||+++++. .||++++|.+|+++..+++
T Consensus       162 P~llllDEPt~gLD~~~~~~l~~~l~~l~----~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~  227 (282)
T PRK13640        162 PKIIILDESTSMLDPAGKEQILKLIRKLK----KKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSP  227 (282)
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeCCH
Confidence            58999999999999999999999999873    224899999999999985 7999999999999887754

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.3e-36  Score=308.25  Aligned_cols=208  Identities=20%  Similarity=0.286  Sum_probs=173.2

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-ch
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DM  123 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~  123 (601)
                      .++++++.|++    .++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++.. +.
T Consensus         3 ~~~~l~~~~~~----~~il~~is~~i~~Ge~~~i~G~nGs--GKSTL------l~~i~G~~~~~~G~i~~~g~~~~~~~~   70 (256)
T TIGR03873         3 RLSRVSWSAGG----RLIVDGVDVTAPPGSLTGLLGPNGS--GKSTL------LRLLAGALRPDAGTVDLAGVDLHGLSR   70 (256)
T ss_pred             eEEeEEEEECC----EEEEeeeeEEEcCCcEEEEECCCCC--CHHHH------HHHHcCCCCCCCCEEEECCEEcccCCH
Confidence            37899999854    4599999999988      999999  56665      679999999999999999998754 33


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHh----hcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ----LKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK  199 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~  199 (601)
                      ...++.++|+||++.+++.+||.||+.++..    ..+.+..+..+++.++++.+|+.+..++++.+||||||||+++|+
T Consensus        71 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~  150 (256)
T TIGR03873        71 RARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVAR  150 (256)
T ss_pred             HHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence            4456679999999988888999999988532    122233344457889999999999899999999999999997544


Q ss_pred             hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365         200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS  279 (601)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  279 (601)
                      +|                                      +.+                                   |+
T Consensus       151 al--------------------------------------~~~-----------------------------------p~  157 (256)
T TIGR03873       151 AL--------------------------------------AQE-----------------------------------PK  157 (256)
T ss_pred             HH--------------------------------------hcC-----------------------------------CC
Confidence            32                                      222                                   58


Q ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      ++||||||+|||+.++..++++|+++.     .+|.|||++||+++++..+||++++|.+|+++..++.
T Consensus       158 llllDEPt~~LD~~~~~~l~~~l~~~~-----~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~  221 (256)
T TIGR03873       158 LLLLDEPTNHLDVRAQLETLALVRELA-----ATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPP  221 (256)
T ss_pred             EEEEcCccccCCHHHHHHHHHHHHHHH-----hcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCH
Confidence            999999999999999999999999873     3588999999999999999999999999999877654

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=100.00  E-value=3.3e-36  Score=303.50  Aligned_cols=205  Identities=30%  Similarity=0.432  Sum_probs=174.7

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTT  125 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~  125 (601)
                      ++++++.|+.     ++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++..... 
T Consensus         3 ~~~l~~~~~~-----~~l~~is~~i~~Ge~~~i~G~nG~--GKStL------l~~l~G~~~p~~G~v~i~g~~~~~~~~-   68 (235)
T cd03299           3 VENLSKDWKE-----FKLKNVSLEVERGDYFVILGPTGS--GKSVL------LETIAGFIKPDSGKILLNGKDITNLPP-   68 (235)
T ss_pred             eEeEEEEeCC-----ceeeeeEEEEcCCcEEEEECCCCC--CHHHH------HHHHhCCcCCCceEEEECCEEcCcCCh-
Confidence            7889998853     279999999988      999999  56655      579999999999999999998754222 


Q ss_pred             hcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchh
Q psy7365         126 IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNK  205 (601)
Q Consensus       126 ~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~  205 (601)
                      .++.+||+||++.+|+.+|+.||+.+.....+.+..+..+++.++++.+|+.+..++++.+||||||||+++||+|    
T Consensus        69 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral----  144 (235)
T cd03299          69 EKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARAL----  144 (235)
T ss_pred             hHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHH----
Confidence            2568999999999999999999999876665665566667788999999999999999999999999999865432    


Q ss_pred             hHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEec
Q psy7365         206 AWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDE  285 (601)
Q Consensus       206 ~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDE  285 (601)
                                                        +.+                                   |++++|||
T Consensus       145 ----------------------------------~~~-----------------------------------p~llllDE  155 (235)
T cd03299         145 ----------------------------------VVN-----------------------------------PKILLLDE  155 (235)
T ss_pred             ----------------------------------HcC-----------------------------------CCEEEECC
Confidence                                              222                                   58999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         286 PTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       286 PtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                      ||+|||+.++..+++.|+++.    ...|.|+|++||+++++..+||++++|.+|+++..++
T Consensus       156 Pt~gLD~~~~~~l~~~l~~~~----~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~  213 (235)
T cd03299         156 PFSALDVRTKEKLREELKKIR----KEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGK  213 (235)
T ss_pred             CcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecC
Confidence            999999999999999999873    2248999999999999999999999999999987664

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=100.00  E-value=2e-36  Score=303.47  Aligned_cols=205  Identities=26%  Similarity=0.394  Sum_probs=169.4

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc-h-
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD-M-  123 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~-~-  123 (601)
                      +++|++.|++    .++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++... . 
T Consensus         3 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~g~~~~~~~~~   70 (230)
T TIGR03410         3 VSNLNVYYGQ----SHILRGVSLEVPKGEVTCVLGRNGV--GKTTL------LKTLMGLLPVKSGSIRLDGEDITKLPPH   70 (230)
T ss_pred             EEeEEEEeCC----eEEecceeeEECCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCCEEEECCEECCCCCHH
Confidence            7899999863    3599999999988      999999  56665      6799999999999999999987532 2 


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcC-CCcccCCccccCChHHHhhhhchhhhc
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLG-IPHKRTSLANTLSGGMQRKLDNVKVWF  202 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g-l~~~~~~~~~~LSgG~~qr~~~~~~~~  202 (601)
                      ...++.+||+||++.+|+.+|+.||+.++....+...   .....++++.++ +.+..++++.+||||||||+++||+| 
T Consensus        71 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~---~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al-  146 (230)
T TIGR03410        71 ERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRS---RKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARAL-  146 (230)
T ss_pred             HHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcch---HHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHH-
Confidence            2235689999999999999999999988765443321   234567788887 67778999999999999999865433 


Q ss_pred             chhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEE
Q psy7365         203 NNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVI  282 (601)
Q Consensus       203 ~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~li  282 (601)
                                                           +.+                                   |+++|
T Consensus       147 -------------------------------------~~~-----------------------------------p~ill  154 (230)
T TIGR03410       147 -------------------------------------VTR-----------------------------------PKLLL  154 (230)
T ss_pred             -------------------------------------hcC-----------------------------------CCEEE
Confidence                                                 222                                   58999


Q ss_pred             EecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       283 LDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      |||||+|||+.++..++++|.++.    +..|+|+|++||+++++..+||+++++.+|+++..++.
T Consensus       155 lDEPt~~LD~~~~~~l~~~l~~~~----~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~  216 (230)
T TIGR03410       155 LDEPTEGIQPSIIKDIGRVIRRLR----AEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAG  216 (230)
T ss_pred             ecCCcccCCHHHHHHHHHHHHHHH----HcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence            999999999999999999999873    22489999999999999999999999999999877654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-36  Score=308.30  Aligned_cols=215  Identities=24%  Similarity=0.367  Sum_probs=177.2

Q ss_pred             CCccchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCC--C---CeeE
Q psy7365          43 ASMGAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLP--V---SSGT  111 (601)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~--~---~~G~  111 (601)
                      +.|+..+..++|+++.|+.    .++++|+||++.+      +|||||  |||||      .++|+|+++  |   ++|+
T Consensus         6 ~~~~~~~l~i~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGs--GKSTL------l~~l~G~~~~~p~~~~~G~   73 (259)
T PRK14274          6 AVMKQEVYQINGMNLWYGQ----HHALKNINLSIPENEVTAIIGPSGC--GKSTF------IKTLNLMIQMVPNVKLTGE   73 (259)
T ss_pred             hhcCCceEEEeeEEEEECC----eeeEEeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHHhhccCCCCCCCceE
Confidence            4566667789999999863    3599999999988      999999  56665      679999997  3   6999


Q ss_pred             EEEccccCCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCC-ChHHHHHHHHHHHHHcCCCc----ccCCc
Q psy7365         112 AKIYDHDIRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIGDLGIPH----KRTSL  183 (601)
Q Consensus       112 v~~~g~~~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~----~~~~~  183 (601)
                      |+++|.++..   .....++.+||+||++.+|+. ||+||+.|+....+. +.++...++.++++.+|+.+    ..++.
T Consensus        74 i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~  152 (259)
T PRK14274         74 MNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQ  152 (259)
T ss_pred             EEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCC
Confidence            9999998752   233456789999999988875 999999987665554 33455667888999999853    46889


Q ss_pred             cccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchh
Q psy7365         184 ANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSI  263 (601)
Q Consensus       184 ~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  263 (601)
                      +.+||||||||+++||++                                      +.+                     
T Consensus       153 ~~~LS~Gq~qrv~laral--------------------------------------~~~---------------------  173 (259)
T PRK14274        153 ALSLSGGQQQRLCIARAL--------------------------------------ATN---------------------  173 (259)
T ss_pred             cccCCHHHHHHHHHHHHH--------------------------------------hcC---------------------
Confidence            999999999999865432                                      233                     


Q ss_pred             HHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccc
Q psy7365         264 LVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQ  343 (601)
Q Consensus       264 ~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv  343 (601)
                                    |+++||||||+|||+.++..+++.|.++.      +++|+|++||+++++..+|||+++|.+|+++
T Consensus       174 --------------p~llllDEPt~~LD~~~~~~l~~~l~~~~------~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~  233 (259)
T PRK14274        174 --------------PDVLLMDEPTSALDPVSTRKIEELILKLK------EKYTIVIVTHNMQQAARVSDQTAFFYMGELV  233 (259)
T ss_pred             --------------CCEEEEcCCcccCCHHHHHHHHHHHHHHh------cCCEEEEEEcCHHHHHHhCCEEEEEECCEEE
Confidence                          58999999999999999999999999872      3689999999999999999999999999998


Q ss_pred             cccCcc
Q psy7365         344 CCGSSV  349 (601)
Q Consensus       344 ~~G~~~  349 (601)
                      ..|++.
T Consensus       234 ~~g~~~  239 (259)
T PRK14274        234 ECNDTN  239 (259)
T ss_pred             EECCHH
Confidence            777543

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-36  Score=322.99  Aligned_cols=198  Identities=19%  Similarity=0.323  Sum_probs=166.6

Q ss_pred             ccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc-----
Q psy7365          54 SLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD-----  122 (601)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~-----  122 (601)
                      +|+|.|++.     .+ |+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++...     
T Consensus         5 ~l~k~~~~~-----~~-~vsl~i~~Ge~~~l~G~nGs--GKSTL------l~~iaGl~~p~~G~I~~~g~~~~~~~~~~~   70 (352)
T PRK11144          5 NFKQQLGDL-----CL-TVNLTLPAQGITAIFGRSGA--GKTSL------INAISGLTRPQKGRIVLNGRVLFDAEKGIC   70 (352)
T ss_pred             EEEEEeCCE-----EE-EEEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCceEEEECCEEccccccccc
Confidence            789998642     23 89999987      999999  56655      5799999999999999999987431     


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhc
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWF  202 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~  202 (601)
                      ....++.+||+||++.+|+++||.||+.|+..      ....+++.++++.+||.+..++++.+||||||||+++||+| 
T Consensus        71 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL-  143 (352)
T PRK11144         71 LPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRAL-  143 (352)
T ss_pred             cchhhCCEEEEcCCcccCCCCcHHHHHHhhhh------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHH-
Confidence            22346789999999999999999999988643      12345688999999999999999999999999999865432 


Q ss_pred             chhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEE
Q psy7365         203 NNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVI  282 (601)
Q Consensus       203 ~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~li  282 (601)
                                                           +.+                                   |+++|
T Consensus       144 -------------------------------------~~~-----------------------------------p~llL  151 (352)
T PRK11144        144 -------------------------------------LTA-----------------------------------PELLL  151 (352)
T ss_pred             -------------------------------------HcC-----------------------------------CCEEE
Confidence                                                 232                                   58999


Q ss_pred             EecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       283 LDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      |||||+|||+..+..+++.|+++.    +..|+|+|++|||++++..+||++++|.+|++...+++
T Consensus       152 LDEPts~LD~~~~~~l~~~L~~l~----~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~  213 (352)
T PRK11144        152 MDEPLASLDLPRKRELLPYLERLA----REINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPL  213 (352)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHH----HhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCH
Confidence            999999999999999999999873    23489999999999999999999999999999877754

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=100.00  E-value=2.9e-36  Score=308.57  Aligned_cols=211  Identities=24%  Similarity=0.327  Sum_probs=173.4

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCC---eeEEEEccccC
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVS---SGTAKIYDHDI  119 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~---~G~v~~~g~~~  119 (601)
                      +..+++|++.|++    .++++|+||++.+      +|||||  |||||      .++|+|+++|+   +|+|.++|.++
T Consensus         4 ~l~~~nl~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~i~G~~~p~~~~~G~i~~~g~~~   71 (262)
T PRK09984          4 IIRVEKLAKTFNQ----HQALHAVDLNIHHGEMVALLGPSGS--GKSTL------LRHLSGLITGDKSAGSHIELLGRTV   71 (262)
T ss_pred             EEEEeeEEEEeCC----eEEEecceEEEcCCcEEEEECCCCC--CHHHH------HHHHhccCCCCCCCceEEEECCEec
Confidence            4568999999853    4599999999988      999999  56665      57999999986   59999999987


Q ss_pred             CC------chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhh--------cCCChHHHHHHHHHHHHHcCCCcccCCccc
Q psy7365         120 RT------DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL--------KQVPKDLAQLEISNMIGDLGIPHKRTSLAN  185 (601)
Q Consensus       120 ~~------~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~--------~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~  185 (601)
                      ..      .....++++||+||++.+|+.+||.||+.++...        .+....+.+.++.++++.+|+.+..++.+.
T Consensus        72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  151 (262)
T PRK09984         72 QREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVS  151 (262)
T ss_pred             ccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcc
Confidence            43      1234567899999999999999999999876421        111223445678899999999988999999


Q ss_pred             cCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHH
Q psy7365         186 TLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILV  265 (601)
Q Consensus       186 ~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  265 (601)
                      +||||||||+++|||+                                      +.+                       
T Consensus       152 ~LS~G~~qrv~laral--------------------------------------~~~-----------------------  170 (262)
T PRK09984        152 TLSGGQQQRVAIARAL--------------------------------------MQQ-----------------------  170 (262)
T ss_pred             ccCHHHHHHHHHHHHH--------------------------------------hcC-----------------------
Confidence            9999999999754432                                      222                       


Q ss_pred             HHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc
Q psy7365         266 AVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  345 (601)
Q Consensus       266 a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~  345 (601)
                                  |++|||||||+|||+.+++.+++.|+++.    +..|+|||++||+++++..+||++++|.+|++...
T Consensus       171 ------------p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~  234 (262)
T PRK09984        171 ------------AKVILADEPIASLDPESARIVMDTLRDIN----QNDGITVVVTLHQVDYALRYCERIVALRQGHVFYD  234 (262)
T ss_pred             ------------CCEEEecCccccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence                        58999999999999999999999999873    22489999999999999999999999999998776


Q ss_pred             cCc
Q psy7365         346 GSS  348 (601)
Q Consensus       346 G~~  348 (601)
                      ++.
T Consensus       235 g~~  237 (262)
T PRK09984        235 GSS  237 (262)
T ss_pred             CCH
Confidence            654

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-36  Score=305.37  Aligned_cols=204  Identities=29%  Similarity=0.417  Sum_probs=168.7

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-ch
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DM  123 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~  123 (601)
                      .++||++.|+.    .++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. ..
T Consensus         5 ~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~i~~~~~   72 (241)
T PRK14250          5 EFKEVSYSSFG----KEILKDISVKFEGGAIYTIVGPSGA--GKSTL------IKLINRLIDPTEGSILIDGVDIKTIDV   72 (241)
T ss_pred             EEEeEEEEeCC----eeeeeeeeEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCcEEEECCEEhhhcCh
Confidence            48899999853    3599999999988      999999  56655      579999999999999999998753 23


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC-cccCCccccCChHHHhhhhchhhhc
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP-HKRTSLANTLSGGMQRKLDNVKVWF  202 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qr~~~~~~~~  202 (601)
                      ...++.+||+||++.+|+ .|+.||+.+.....+  .  ...++.++++.+|+. +..++++.+||||||||+++||||+
T Consensus        73 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~  147 (241)
T PRK14250         73 IDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKG--E--KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLA  147 (241)
T ss_pred             HHhhhcEEEEecCchhch-hhHHHHHhcchhhcC--c--HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHh
Confidence            445678999999998886 699999987544322  1  235678899999997 5789999999999999998654332


Q ss_pred             chhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEE
Q psy7365         203 NNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVI  282 (601)
Q Consensus       203 ~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~li  282 (601)
                                                            .+                                   |+++|
T Consensus       148 --------------------------------------~~-----------------------------------p~lll  154 (241)
T PRK14250        148 --------------------------------------NN-----------------------------------PEVLL  154 (241)
T ss_pred             --------------------------------------cC-----------------------------------CCEEE
Confidence                                                  22                                   58999


Q ss_pred             EecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       283 LDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      |||||+|||+.+++.+++.|+++.    +..|.|||++||+++++..+||++++|.+|+++..+++
T Consensus       155 lDEPt~~LD~~~~~~l~~~l~~~~----~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~  216 (241)
T PRK14250        155 LDEPTSALDPTSTEIIEELIVKLK----NKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKT  216 (241)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHH----HhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCH
Confidence            999999999999999999999873    22489999999999999999999999999998766543

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.4e-36  Score=302.56  Aligned_cols=206  Identities=24%  Similarity=0.369  Sum_probs=168.6

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchH
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMT  124 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~  124 (601)
                      .+++|++.|+..    .  .|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.....
T Consensus         3 ~~~~l~~~~~~~----~--~~is~~i~~Ge~~~l~G~nGs--GKSTL------l~~l~Gl~~~~~G~i~~~g~~~~~~~~   68 (232)
T PRK10771          3 KLTDITWLYHHL----P--MRFDLTVERGERVAILGPSGA--GKSTL------LNLIAGFLTPASGSLTLNGQDHTTTPP   68 (232)
T ss_pred             EEEEEEEEECCc----c--ceeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCceEEECCeecCcCCh
Confidence            488999998631    1  389999988      999999  56665      579999999999999999998754221


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcch
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNN  204 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~  204 (601)
                       .++.+||+||++.+|+.+|+.||+.++.............++.++++.+|+++..++++.+||||||||+++||++   
T Consensus        69 -~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral---  144 (232)
T PRK10771         69 -SRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCL---  144 (232)
T ss_pred             -hhccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHH---
Confidence             2467999999999999999999998754321111223456788999999999999999999999999999864432   


Q ss_pred             hhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEe
Q psy7365         205 KAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILD  284 (601)
Q Consensus       205 ~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLD  284 (601)
                                                         +.+                                   |+++|||
T Consensus       145 -----------------------------------~~~-----------------------------------p~lllLD  154 (232)
T PRK10771        145 -----------------------------------VRE-----------------------------------QPILLLD  154 (232)
T ss_pred             -----------------------------------hcC-----------------------------------CCEEEEe
Confidence                                               222                                   5899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         285 EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       285 EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      |||+|||+.++..++++|.++.    +..|+|+|++||+++++..+||++++|.+|++...++.
T Consensus       155 EP~~gLD~~~~~~~~~~l~~~~----~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~  214 (232)
T PRK10771        155 EPFSALDPALRQEMLTLVSQVC----QERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPT  214 (232)
T ss_pred             CCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence            9999999999999999999873    22488999999999999999999999999998876643

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.9e-36  Score=342.51  Aligned_cols=217  Identities=18%  Similarity=0.258  Sum_probs=179.8

Q ss_pred             chhhhhcccccccccCC-------CccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEE
Q psy7365          47 AYVSLFESLSENRDKLG-------IDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAK  113 (601)
Q Consensus        47 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~  113 (601)
                      .++..++||++.|+..+       ....+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.
T Consensus       311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGs--GKSTL------lk~i~Gl~~p~~G~I~  382 (623)
T PRK10261        311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGS--GKSTT------GRALLRLVESQGGEII  382 (623)
T ss_pred             CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCC--CHHHH------HHHHHcCCCCCCcEEE
Confidence            45677999999986321       135699999999988      999999  56665      5799999999999999


Q ss_pred             EccccCCCc----hHHhcccEEEEccCC--CCCCCCCHHHHHHHhHhhcCC-ChHHHHHHHHHHHHHcCCC-cccCCccc
Q psy7365         114 IYDHDIRTD----MTTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIGDLGIP-HKRTSLAN  185 (601)
Q Consensus       114 ~~g~~~~~~----~~~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~-~~~~~~~~  185 (601)
                      ++|.++...    ....++.|||+||++  .+++.+||.||+.+.....+. ++.+.+.++.++++.+||. ...+++++
T Consensus       383 ~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~  462 (623)
T PRK10261        383 FNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPH  462 (623)
T ss_pred             ECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcc
Confidence            999988532    123467899999998  589999999999987655554 3445567889999999996 67899999


Q ss_pred             cCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHH
Q psy7365         186 TLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILV  265 (601)
Q Consensus       186 ~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  265 (601)
                      +|||||||||+|||||                                      +.+                       
T Consensus       463 ~LSgGqrQRv~iAraL--------------------------------------~~~-----------------------  481 (623)
T PRK10261        463 EFSGGQRQRICIARAL--------------------------------------ALN-----------------------  481 (623)
T ss_pred             cCCHHHHHHHHHHHHH--------------------------------------hcC-----------------------
Confidence            9999999999865432                                      232                       


Q ss_pred             HHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc
Q psy7365         266 AVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  345 (601)
Q Consensus       266 a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~  345 (601)
                                  |++|||||||+|||+.++..++++|+++.    +..|.|||++|||++++..+|||+++|.+|+++..
T Consensus       482 ------------p~llllDEPts~LD~~~~~~i~~ll~~l~----~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~  545 (623)
T PRK10261        482 ------------PKVIIADEAVSALDVSIRGQIINLLLDLQ----RDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEI  545 (623)
T ss_pred             ------------CCEEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence                        58999999999999999999999999984    23489999999999999999999999999999877


Q ss_pred             cCc
Q psy7365         346 GSS  348 (601)
Q Consensus       346 G~~  348 (601)
                      |++
T Consensus       546 g~~  548 (623)
T PRK10261        546 GPR  548 (623)
T ss_pred             cCH
Confidence            654

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5e-36  Score=306.55  Aligned_cols=207  Identities=24%  Similarity=0.315  Sum_probs=172.6

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCC-----CCeeEEEEcccc
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLP-----VSSGTAKIYDHD  118 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~-----~~~G~v~~~g~~  118 (601)
                      ..++++++.|+.    .++++|+||++.+      +||||+  |||||      .++|+|+++     |++|+|.++|.+
T Consensus        14 l~~~~l~~~~~~----~~il~~isl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~~~p~~p~~G~i~~~g~~   81 (260)
T PRK10744         14 IQVRNLNFYYGK----FHALKNINLDIAKNQVTAFIGPSGC--GKSTL------LRTFNRMYELYPEQRAEGEILLDGEN   81 (260)
T ss_pred             EEEEEEEEEeCC----eEEeeceeEEEcCCCEEEEECCCCC--CHHHH------HHHHhcccccCCCCCcceEEEECCEE
Confidence            458999999864    3599999999988      999999  56665      579999986     589999999998


Q ss_pred             CCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhc-CCChHHHHHHHHHHHHHcCCC----cccCCccccCChH
Q psy7365         119 IRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIGDLGIP----HKRTSLANTLSGG  190 (601)
Q Consensus       119 ~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgG  190 (601)
                      +..   +....++++||+||++.+|+ .|+.||+.++.... +.+..+..+++.++++.+|+.    +..++.+.+||||
T Consensus        82 ~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G  160 (260)
T PRK10744         82 ILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGG  160 (260)
T ss_pred             ccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHH
Confidence            742   23456778999999998887 89999999876544 455556667789999999984    4578899999999


Q ss_pred             HHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHH
Q psy7365         191 MQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVL  270 (601)
Q Consensus       191 ~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~  270 (601)
                      ||||+++||||+                                      .+                            
T Consensus       161 q~qrv~laral~--------------------------------------~~----------------------------  174 (260)
T PRK10744        161 QQQRLCIARGIA--------------------------------------IR----------------------------  174 (260)
T ss_pred             HHHHHHHHHHHH--------------------------------------CC----------------------------
Confidence            999998654332                                      22                            


Q ss_pred             HhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         271 FAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       271 ~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                             |+++||||||+|||+.+++.+++.|+++.      .+.|||++||+++++..+||++++|++|+++..+..
T Consensus       175 -------p~lllLDEPt~~LD~~~~~~l~~~L~~~~------~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~  239 (260)
T PRK10744        175 -------PEVLLLDEPCSALDPISTGRIEELITELK------QDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNT  239 (260)
T ss_pred             -------CCEEEEcCCCccCCHHHHHHHHHHHHHHh------cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence                   58999999999999999999999999872      368999999999999999999999999999876643

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.5e-36  Score=308.62  Aligned_cols=209  Identities=21%  Similarity=0.256  Sum_probs=173.0

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-ch
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DM  123 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~  123 (601)
                      .+++|++.|++    .++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++.. ..
T Consensus         9 ~i~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGs--GKSTL------l~~i~G~~~~~~G~i~~~g~~~~~~~~   76 (265)
T PRK10253          9 RGEQLTLGYGK----YTVAENLTVEIPDGHFTAIIGPNGC--GKSTL------LRTLSRLMTPAHGHVWLDGEHIQHYAS   76 (265)
T ss_pred             EEEEEEEEECC----EEEeeecceEECCCCEEEEECCCCC--CHHHH------HHHHcCCCCCCCcEEEECCEEhhhCCH
Confidence            48999999863    4599999999988      999999  56665      679999999999999999998754 33


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHh-hcC---CChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ-LKQ---VPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK  199 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~-~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~  199 (601)
                      ...++.+||+||++.+|+.+|+.||+.++.. ..+   ...+....++.++++.+|+.+..++++.+||||||||+++||
T Consensus        77 ~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lar  156 (265)
T PRK10253         77 KEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAM  156 (265)
T ss_pred             HHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHH
Confidence            4456689999999999999999999987531 111   112333457889999999998899999999999999997554


Q ss_pred             hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365         200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS  279 (601)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  279 (601)
                      |+                                      +.+                                   |+
T Consensus       157 al--------------------------------------~~~-----------------------------------p~  163 (265)
T PRK10253        157 VL--------------------------------------AQE-----------------------------------TA  163 (265)
T ss_pred             HH--------------------------------------hcC-----------------------------------CC
Confidence            32                                      222                                   58


Q ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      ++||||||+|||+.++..+++.|.++.    +..|.|+|++||+++++..+||++++|.+|+++..+++
T Consensus       164 llllDEPt~gLD~~~~~~l~~~L~~l~----~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~  228 (265)
T PRK10253        164 IMLLDEPTTWLDISHQIDLLELLSELN----REKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAP  228 (265)
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence            999999999999999999999999873    22489999999999999999999999999998877653

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.9e-36  Score=303.50  Aligned_cols=207  Identities=26%  Similarity=0.359  Sum_probs=171.3

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCC---CCeeEEEEccccCC
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLP---VSSGTAKIYDHDIR  120 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~---~~~G~v~~~g~~~~  120 (601)
                      +.++++++.|+.    ..+++|+||++.+      +||||+  |||||      .++|+|+++   |++|+|+++|+++.
T Consensus         3 ~~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~~~~~~~G~i~~~g~~i~   70 (246)
T PRK14269          3 AKTTNLNLFYGK----KQALFDINMQIEQNKITALIGASGC--GKSTF------LRCFNRMNDKIAKIDGLVEIEGKDVK   70 (246)
T ss_pred             eeeeeeEEEECC----EeeeeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcccCCCCCCceEEEECCEecc
Confidence            457899999863    4599999999988      999999  56665      579999984   79999999999885


Q ss_pred             C-chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCC--ChHHHHHHHHHHHHHcCCC----cccCCccccCChHHHh
Q psy7365         121 T-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV--PKDLAQLEISNMIGDLGIP----HKRTSLANTLSGGMQR  193 (601)
Q Consensus       121 ~-~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgG~~q  193 (601)
                      . +....++.+||+||++.+|+ .|++||+.++....+.  +....+.++.++++.+|+.    +..++.+.+|||||||
T Consensus        71 ~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q  149 (246)
T PRK14269         71 NQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQ  149 (246)
T ss_pred             cCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHH
Confidence            4 23455778999999999887 6999999987654443  2244556788999999995    4568899999999999


Q ss_pred             hhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhh
Q psy7365         194 KLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAM  273 (601)
Q Consensus       194 r~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  273 (601)
                      |+++||+|+                                      .+                               
T Consensus       150 rv~laral~--------------------------------------~~-------------------------------  160 (246)
T PRK14269        150 RLCIARALA--------------------------------------IK-------------------------------  160 (246)
T ss_pred             HHHHHHHHh--------------------------------------cC-------------------------------
Confidence            998654332                                      32                               


Q ss_pred             ccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         274 SFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       274 ~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                          |+++||||||+|||+.++..+.+.|.++     . +|+|+|++||+++++...||++++|.+|+++..++.
T Consensus       161 ----p~lllLDEP~~~LD~~~~~~l~~~l~~~-----~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~  225 (246)
T PRK14269        161 ----PKLLLLDEPTSALDPISSGVIEELLKEL-----S-HNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGES  225 (246)
T ss_pred             ----CCEEEEcCCcccCCHHHHHHHHHHHHHH-----h-CCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCH
Confidence                5899999999999999999999999987     2 378999999999999999999999999999876643

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.6e-36  Score=307.00  Aligned_cols=209  Identities=22%  Similarity=0.321  Sum_probs=172.5

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCC-----CeeEEEEcc
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPV-----SSGTAKIYD  116 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~-----~~G~v~~~g  116 (601)
                      ..+.+++|++.|+.    ..+++|+||++.+      +||||+  |||||      .++|+|+++|     ++|+|+++|
T Consensus        18 ~~l~~~nl~~~~~~----~~il~~isl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~~~~~~~~~G~I~~~g   85 (267)
T PRK14235         18 IKMRARDVSVFYGE----KQALFDVDLDIPEKTVTAFIGPSGC--GKSTF------LRCLNRMNDTIDGCRVTGKITLDG   85 (267)
T ss_pred             ceEEEEeEEEEECC----EEEEEEEEEEEcCCCEEEEECCCCC--CHHHH------HHHHHhhcccccCCCCceEEEECC
Confidence            35569999999863    4599999999988      999999  56665      5799999975     899999999


Q ss_pred             ccCCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCC--ChHHHHHHHHHHHHHcCCCc----ccCCccccC
Q psy7365         117 HDIRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV--PKDLAQLEISNMIGDLGIPH----KRTSLANTL  187 (601)
Q Consensus       117 ~~~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~gl~~----~~~~~~~~L  187 (601)
                      .++..   .....++.+||+||++.+|+. ||.||+.|+....+.  +......++.++++.+|+.+    ..++++.+|
T Consensus        86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L  164 (267)
T PRK14235         86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGL  164 (267)
T ss_pred             EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccC
Confidence            98753   234456789999999998875 999999987654443  33445567889999999964    467889999


Q ss_pred             ChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHH
Q psy7365         188 SGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAV  267 (601)
Q Consensus       188 SgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~  267 (601)
                      |||||||+++||+|                                      +.+                         
T Consensus       165 SgGq~qrv~laral--------------------------------------~~~-------------------------  181 (267)
T PRK14235        165 SGGQQQRLCIARAI--------------------------------------AVS-------------------------  181 (267)
T ss_pred             CHHHHHHHHHHHHH--------------------------------------HcC-------------------------
Confidence            99999999865432                                      233                         


Q ss_pred             HHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         268 TVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       268 ~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                                |++|||||||+|||+.++..+.++|+++.      .++|||++||+++++..+||++++|.+|+++..+.
T Consensus       182 ----------p~lllLDEPt~~LD~~~~~~l~~~L~~l~------~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~  245 (267)
T PRK14235        182 ----------PEVILMDEPCSALDPIATAKVEELIDELR------QNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGD  245 (267)
T ss_pred             ----------CCEEEEeCCCcCCCHHHHHHHHHHHHHHh------cCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCC
Confidence                      58999999999999999999999999872      26899999999999999999999999999987664


Q ss_pred             c
Q psy7365         348 S  348 (601)
Q Consensus       348 ~  348 (601)
                      .
T Consensus       246 ~  246 (267)
T PRK14235        246 T  246 (267)
T ss_pred             H
Confidence            3

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=100.00  E-value=5.2e-36  Score=298.85  Aligned_cols=206  Identities=25%  Similarity=0.383  Sum_probs=170.9

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc--
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD--  122 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~--  122 (601)
                      .++++++.|+.......+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++...  
T Consensus         3 ~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGs--GKStL------l~~l~G~~~~~~G~i~~~g~~~~~~~~   74 (220)
T TIGR02982         3 SIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGS--GKTTL------LTLIGGLRSVQEGSLKVLGQELYGASE   74 (220)
T ss_pred             EEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCeEEEECCEEhHhcCH
Confidence            4789999985422236799999999988      999999  56665      5799999999999999999987431  


Q ss_pred             --hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhc-CCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365         123 --MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK  199 (601)
Q Consensus       123 --~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~  199 (601)
                        ....++.+||+||++.+|+.+|+.||+.++.... ..+..+...++.++++.+|+.+..++.+.+||||||||+++||
T Consensus        75 ~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~lar  154 (220)
T TIGR02982        75 KELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIAR  154 (220)
T ss_pred             hHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHH
Confidence              1235678999999999999999999999876544 2455566678899999999999999999999999999997544


Q ss_pred             hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365         200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS  279 (601)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  279 (601)
                      ++                                      +.                                   .|+
T Consensus       155 al--------------------------------------~~-----------------------------------~p~  161 (220)
T TIGR02982       155 AL--------------------------------------VH-----------------------------------RPK  161 (220)
T ss_pred             HH--------------------------------------hc-----------------------------------CCC
Confidence            32                                      22                                   258


Q ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcc
Q psy7365         280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL  342 (601)
Q Consensus       280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkI  342 (601)
                      ++||||||+|||+.++..+++.|+++.    +..|+|+|++||+++. .++||++++|.+|++
T Consensus       162 illlDEP~~~LD~~~~~~l~~~l~~~~----~~~~~tii~~sh~~~~-~~~~d~v~~l~~g~~  219 (220)
T TIGR02982       162 LVLADEPTAALDSKSGRDVVELMQKLA----REQGCTILIVTHDNRI-LDVADRIVHMEDGKL  219 (220)
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHHHHHH----HHcCCEEEEEeCCHHH-HhhCCEEEEEECCEE
Confidence            999999999999999999999999873    2248999999999985 579999999999875

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=100.00  E-value=7.9e-36  Score=300.02  Aligned_cols=206  Identities=28%  Similarity=0.386  Sum_probs=175.8

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTT  125 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~  125 (601)
                      +++|++.|+.    ...++|+||++.+      +||||+  |||||      .++|+|+++|++|+|+++|.++.... .
T Consensus         3 ~~~l~~~~~~----~~il~~i~~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~g~~~~~~G~i~~~g~~~~~~~-~   69 (232)
T cd03300           3 LENVSKFYGG----FVALDGVSLDIKEGEFFTLLGPSGC--GKTTL------LRLIAGFETPTSGEILLDGKDITNLP-P   69 (232)
T ss_pred             EEeEEEEeCC----eeeeccceEEECCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCceEEEECCEEcCcCC-h
Confidence            7899999863    3599999999988      999999  67765      67999999999999999999885422 2


Q ss_pred             hcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchh
Q psy7365         126 IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNK  205 (601)
Q Consensus       126 ~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~  205 (601)
                      .++.+||+||++.+|+.+|+.||+.+.....+.+.....+++.++++.+|+.+..++.+.+|||||+||+++||+|    
T Consensus        70 ~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral----  145 (232)
T cd03300          70 HKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARAL----  145 (232)
T ss_pred             hhcceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH----
Confidence            3568999999999999999999998877666665556667788999999999999999999999999999765432    


Q ss_pred             hHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEec
Q psy7365         206 AWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDE  285 (601)
Q Consensus       206 ~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDE  285 (601)
                                                        +.+                                   |+++||||
T Consensus       146 ----------------------------------~~~-----------------------------------p~llllDE  156 (232)
T cd03300         146 ----------------------------------VNE-----------------------------------PKVLLLDE  156 (232)
T ss_pred             ----------------------------------hcC-----------------------------------CCEEEEcC
Confidence                                              233                                   58999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         286 PTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       286 PtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                      ||+|||+.++..++++|+++.    +..|.|||++||+++++...||++++|.+|++...++
T Consensus       157 P~~gLD~~~~~~l~~~l~~~~----~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~  214 (232)
T cd03300         157 PLGALDLKLRKDMQLELKRLQ----KELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGT  214 (232)
T ss_pred             CcccCCHHHHHHHHHHHHHHH----HHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence            999999999999999999873    2248999999999999999999999999999876654

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=100.00  E-value=5.4e-36  Score=299.17  Aligned_cols=200  Identities=30%  Similarity=0.448  Sum_probs=169.5

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTT  125 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~  125 (601)
                      ++++++.|++    .++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++...  .
T Consensus         3 l~~v~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~~~~~~~~--~   68 (223)
T TIGR03740         3 TKNLSKRFGK----QTAVNNISLTVPKNSVYGLLGPNGA--GKSTL------LKMITGILRPTSGEIIFDGHPWTRK--D   68 (223)
T ss_pred             EEeEEEEECC----EEEEeeeEEEEcCCcEEEEECCCCC--CHHHH------HHHHhCCCCCCceEEEECCEecccc--c
Confidence            7889998863    4599999999988      999999  56665      5799999999999999999876431  1


Q ss_pred             hcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchh
Q psy7365         126 IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNK  205 (601)
Q Consensus       126 ~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~  205 (601)
                       ++.++|+||++.+|+.+|+.||+.++....+.+    ..++.++++.+|+++..++.+.+|||||+||+++||++    
T Consensus        69 -~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral----  139 (223)
T TIGR03740        69 -LHKIGSLIESPPLYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIAL----  139 (223)
T ss_pred             -cccEEEEcCCCCccccCCHHHHHHHHHHHcCCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHH----
Confidence             357999999999999999999998876655543    24578899999999999999999999999999754332    


Q ss_pred             hHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEec
Q psy7365         206 AWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDE  285 (601)
Q Consensus       206 ~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDE  285 (601)
                                                        +.+                                   |++++|||
T Consensus       140 ----------------------------------~~~-----------------------------------p~llllDE  150 (223)
T TIGR03740       140 ----------------------------------LNH-----------------------------------PKLLILDE  150 (223)
T ss_pred             ----------------------------------hcC-----------------------------------CCEEEECC
Confidence                                              222                                   58999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         286 PTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       286 PtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      ||+|||+.+++.++++|+++.     .+|.|+|++||+.+++...||++++|.+|++...+.+
T Consensus       151 P~~~LD~~~~~~l~~~L~~~~-----~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~  208 (223)
T TIGR03740       151 PTNGLDPIGIQELRELIRSFP-----EQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKI  208 (223)
T ss_pred             CccCCCHHHHHHHHHHHHHHH-----HCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecCh
Confidence            999999999999999999872     3588999999999999999999999999998876643

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.2e-36  Score=304.93  Aligned_cols=208  Identities=23%  Similarity=0.326  Sum_probs=171.8

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCC-----CeeEEEEcccc
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPV-----SSGTAKIYDHD  118 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~-----~~G~v~~~g~~  118 (601)
                      ..++++++.|+.    ..+++|+||++.+      +|||||  |||||      .++|+|+++|     ++|+|.++|.+
T Consensus         5 l~i~~v~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGs--GKSTL------l~~laGl~~~~~~~~~~G~I~~~g~~   72 (258)
T PRK14241          5 IDVKDLNIYYGS----FHAVEDVNLNIEPRSVTAFIGPSGC--GKSTV------LRTLNRMHEVIPGARVEGEVLLDGED   72 (258)
T ss_pred             EEEeeEEEEECC----EeeeeeeeEEEcCCcEEEEECCCCC--CHHHH------HHHHhccCCcccCCCcceEEEECCEe
Confidence            458999999863    3599999999988      999999  56665      5799999974     79999999998


Q ss_pred             CCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCC-ChHHHHHHHHHHHHHcCCC----cccCCccccCChH
Q psy7365         119 IRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIGDLGIP----HKRTSLANTLSGG  190 (601)
Q Consensus       119 ~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgG  190 (601)
                      +..   .....++.+||+||++.+|+.+||.||+.++....+. +....++++.++++.+|+.    +..++.+.+||||
T Consensus        73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G  152 (258)
T PRK14241         73 LYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGG  152 (258)
T ss_pred             ccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHH
Confidence            742   2334567899999999999999999999987655443 4455566788999999984    4678999999999


Q ss_pred             HHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHH
Q psy7365         191 MQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVL  270 (601)
Q Consensus       191 ~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~  270 (601)
                      ||||+++||+|+                                      .+                            
T Consensus       153 ~~qrv~laral~--------------------------------------~~----------------------------  166 (258)
T PRK14241        153 QQQRLCIARAIA--------------------------------------VE----------------------------  166 (258)
T ss_pred             HHHHHHHHHHHh--------------------------------------cC----------------------------
Confidence            999998654332                                      22                            


Q ss_pred             HhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEec------CCcccc
Q psy7365         271 FAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA------AGKLQC  344 (601)
Q Consensus       271 ~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~------~GkIv~  344 (601)
                             |+++||||||+|||+.++..++++|+++.      +++|||++||+++++..+||++++|.      +|+++.
T Consensus       167 -------p~llllDEPt~~LD~~~~~~l~~~l~~~~------~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~  233 (258)
T PRK14241        167 -------PDVLLMDEPCSALDPISTLAIEDLINELK------QDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE  233 (258)
T ss_pred             -------CCEEEEcCCCccCCHHHHHHHHHHHHHHh------cCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence                   58999999999999999999999999872      35899999999999999999999997      688776


Q ss_pred             ccCc
Q psy7365         345 CGSS  348 (601)
Q Consensus       345 ~G~~  348 (601)
                      .++.
T Consensus       234 ~~~~  237 (258)
T PRK14241        234 IDDT  237 (258)
T ss_pred             cCCH
Confidence            6543

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=100.00  E-value=1.1e-34  Score=338.37  Aligned_cols=125  Identities=25%  Similarity=0.404  Sum_probs=110.1

Q ss_pred             CCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCc-ccccccCcCChHHHHHHHHHHHHhC---CCCEEEEECCCCCC
Q psy7365         386 RLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLG---NTPLIFLDEPTSGM  461 (601)
Q Consensus       386 ~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~-~~~~~~~~LSgGqkQRl~lA~AL~~---~P~lLlLDEPTsGL  461 (601)
                      +||+.|.+.|+..+.++      .+..++|+.+||.. ..++++.+|||||+||+.||++|+.   +|+++||||||+||
T Consensus       789 ~~tv~e~~~f~~~~~~i------~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgL  862 (924)
T TIGR00630       789 DMTVEEAYEFFEAVPSI------SRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGL  862 (924)
T ss_pred             CCcHHHHHHHHHhccch------hHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCC
Confidence            46888888887654332      13457899999975 4789999999999999999999997   59999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEE------eCCEEEEecCHHHH
Q psy7365         462 DPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLGSATHL  517 (601)
Q Consensus       462 D~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL------~~G~iv~~G~~~~L  517 (601)
                      |+..+..++++|+++.++|.|||++||+++++. .||++++|      ++|++++.|+++++
T Consensus       863 D~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv~~G~~~~l  923 (924)
T TIGR00630       863 HFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK-TADYIIDLGPEGGDGGGTIVASGTPEEV  923 (924)
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence            999999999999999888999999999999985 69999999      79999999999875

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=5.1e-35  Score=305.58  Aligned_cols=273  Identities=19%  Similarity=0.298  Sum_probs=204.1

Q ss_pred             CcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCc--ccccccccCCCCcccC
Q psy7365         314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSA--PQKSYIGYCPQFDALN  384 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~--~~~~~ig~v~Q~~~l~  384 (601)
                      +++++   +++++...-++.+++++...   .|+++++       .+..|+..+.+.+....  ..++.+||+||++.++
T Consensus        14 ~~~~l---~~is~~i~~Gei~~l~G~NG---aGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~   87 (301)
T TIGR03522        14 TQNAL---DEVSFEAQKGRIVGFLGPNG---AGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLY   87 (301)
T ss_pred             CEEEE---EEeEEEEeCCeEEEEECCCC---CCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCC
Confidence            44544   89999999999999997422   4555443       23344444444443221  2356799999999999


Q ss_pred             CCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHH
Q psy7365         385 DRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG  464 (601)
Q Consensus       385 ~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~  464 (601)
                      +.+|+.||+.++..+++.+.++..++++++++.++|.+..++++++||||||||++||+||+++|++|||||||+||||.
T Consensus        88 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~  167 (301)
T TIGR03522        88 LDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPN  167 (301)
T ss_pred             CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence            99999999999888877666666677899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHhCCceEEEEEecCCCchhHHHHHh
Q psy7365         465 ARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSADAQTYLS  544 (601)
Q Consensus       465 ~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~~~~~~l~i~~~~~~~~~~~~~l~  544 (601)
                      +++.++++|+++++ ++|||++||++++++++|||+++|++|++++.|++++++.... ...+.+.+.......   ...
T Consensus       168 ~~~~l~~~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~-~~~~~i~~~~~~~~~---~~~  242 (301)
T TIGR03522       168 QLVEIRNVIKNIGK-DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAANK-KQVIEVEFEEQIDLQ---LFE  242 (301)
T ss_pred             HHHHHHHHHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHhcC-CceEEEEecCcchhH---HHh
Confidence            99999999999864 7999999999999999999999999999999999999987643 234455543211111   111


Q ss_pred             hcCCCceeEEe-eCcEEEEEEcCCcccHHHHHHHHHHccccCCCeeEEEecCCCCCCC
Q psy7365         545 LNLPVADLVET-HATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLEDS  601 (601)
Q Consensus       545 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~i~~~~v~~~sLEdv  601 (601)
                       .......... .++.+.+..+......+++...+.+.  +.. +.++...++||||+
T Consensus       243 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~sLe~~  296 (301)
T TIGR03522       243 -TLEEISSVKNTGGNTWKLTFETPNDTRPEIFKLAQQK--GLK-LISLQQNEKNLEQV  296 (301)
T ss_pred             -hccccceeeecCCCeEEEEEcCccchHHHHHHHHHHC--CCc-eEEEEeCCCCHHHH
Confidence             1122222222 23344444433333456677766544  345 88999999999984

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.8e-36  Score=302.82  Aligned_cols=208  Identities=26%  Similarity=0.356  Sum_probs=172.0

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCC--C---CeeEEEEcccc
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLP--V---SSGTAKIYDHD  118 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~--~---~~G~v~~~g~~  118 (601)
                      ..++++++.|++    .++++|+||++.+      +|||||  |||||      .++|+|+++  |   ++|+|+++|.+
T Consensus         5 l~~~nl~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~~~~~~~~~G~v~~~g~~   72 (252)
T PRK14256          5 VKLEQLNVHFGK----NHAVKDVSMDFPENSVTAIIGPSGC--GKSTV------LRSINRMHDLVPSARVTGKILLDDTD   72 (252)
T ss_pred             EEEEEEEEEeCC----eeEEecceEEEcCCCEEEEECCCCC--CHHHH------HHHHHhcccCCCCCCCceEEEECCEE
Confidence            358999999863    3599999999988      999999  57665      679999986  4   69999999998


Q ss_pred             CCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCC-ChHHHHHHHHHHHHHcCCCc----ccCCccccCChH
Q psy7365         119 IRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIGDLGIPH----KRTSLANTLSGG  190 (601)
Q Consensus       119 ~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~----~~~~~~~~LSgG  190 (601)
                      +..   ....+++.++|+||++.+|+.+|+.||+.++....+. +..+...++.++++.+|+..    ..++.+.+||||
T Consensus        73 i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G  152 (252)
T PRK14256         73 IYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGG  152 (252)
T ss_pred             cccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHH
Confidence            753   2334577899999999999999999999886655442 34455567889999999853    567889999999


Q ss_pred             HHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHH
Q psy7365         191 MQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVL  270 (601)
Q Consensus       191 ~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~  270 (601)
                      ||||+++||+|                                      +.+                            
T Consensus       153 ~~qrl~laral--------------------------------------~~~----------------------------  166 (252)
T PRK14256        153 QQQRLCIARTI--------------------------------------AVK----------------------------  166 (252)
T ss_pred             HHHHHHHHHHH--------------------------------------hcC----------------------------
Confidence            99999864432                                      222                            


Q ss_pred             HhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         271 FAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       271 ~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                             |+++||||||+|||+.+++.+++.|+++.      +++|||++||+++++..+||++++|.+|++...++.
T Consensus       167 -------p~llllDEP~~gLD~~~~~~l~~~l~~~~------~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~  231 (252)
T PRK14256        167 -------PEVILMDEPASALDPISTLKIEELIEELK------EKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGET  231 (252)
T ss_pred             -------CCEEEEcCCcccCCHHHHHHHHHHHHHHH------hCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence                   58999999999999999999999999872      257999999999999999999999999999877653

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=100.00  E-value=6.4e-36  Score=315.57  Aligned_cols=184  Identities=28%  Similarity=0.394  Sum_probs=158.4

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCC
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV  158 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~  158 (601)
                      +|||||  |||||      .++|+|+++|++|+|.++|+++..... .++.+||+||++.+|+++||.||+.|+....+.
T Consensus         2 ~G~nGs--GKSTL------l~~iaGl~~p~~G~I~i~g~~i~~~~~-~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~   72 (325)
T TIGR01187         2 LGPSGC--GKTTL------LRLLAGFEQPDSGSIMLDGEDVTNVPP-HLRHINMVFQSYALFPHMTVEENVAFGLKMRKV   72 (325)
T ss_pred             cCCCCC--CHHHH------HHHHHCCCCCCceEEEECCEECCCCCH-HHCCEEEEecCccccCCCcHHHHHHHHHhhcCC
Confidence            699999  56665      579999999999999999998854222 356899999999999999999999998776666


Q ss_pred             ChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHH
Q psy7365         159 PKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIV  238 (601)
Q Consensus       159 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  238 (601)
                      ++.+.++++.++++.+||.+..++++.+||||||||+++||+|                                     
T Consensus        73 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL-------------------------------------  115 (325)
T TIGR01187        73 PRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARAL-------------------------------------  115 (325)
T ss_pred             CHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHH-------------------------------------
Confidence            6666677889999999999999999999999999999865433                                     


Q ss_pred             hhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEE
Q psy7365         239 AINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVI  318 (601)
Q Consensus       239 ~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI  318 (601)
                       +.+                                   |+++||||||+|||+..+..+++.|+++.    +..|+|+|
T Consensus       116 -~~~-----------------------------------p~lllLDEP~s~LD~~~~~~l~~~l~~l~----~~~g~tii  155 (325)
T TIGR01187       116 -VFK-----------------------------------PKILLLDEPLSALDKKLRDQMQLELKTIQ----EQLGITFV  155 (325)
T ss_pred             -HhC-----------------------------------CCEEEEeCCCccCCHHHHHHHHHHHHHHH----HhcCCEEE
Confidence             222                                   58999999999999999999999999874    23489999


Q ss_pred             EEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         319 LTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       319 ~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      ++||+++++..+||++++|.+|++...+++
T Consensus       156 ivTHd~~e~~~~~d~i~vl~~G~i~~~g~~  185 (325)
T TIGR01187       156 FVTHDQEEAMTMSDRIAIMRKGKIAQIGTP  185 (325)
T ss_pred             EEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence            999999999999999999999998776643

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=100.00  E-value=9.7e-36  Score=299.24  Aligned_cols=189  Identities=25%  Similarity=0.365  Sum_probs=158.7

Q ss_pred             eecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCC
Q psy7365          69 ISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDK  142 (601)
Q Consensus        69 ~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~  142 (601)
                      ++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++....    ...+|+||++.+|+.
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~~~~~~----~~~~~v~q~~~l~~~   68 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGC--GKSTL------LNLISGLAQPTSGGVILEGKQITEPG----PDRMVVFQNYSLLPW   68 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCceEEECCEECCCCC----hhheEEecCcccCCC
Confidence            4789999988      999999  56665      57999999999999999999875421    124899999999999


Q ss_pred             CCHHHHHHHhHhh--cCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhh
Q psy7365         143 LTVEEHMWFYSQL--KQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNV  220 (601)
Q Consensus       143 ~tv~e~l~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~  220 (601)
                      +||.||+.++...  .+.++.+.++++.++++.+|+.+..++++.+||||||||+++||++                   
T Consensus        69 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al-------------------  129 (230)
T TIGR01184        69 LTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARAL-------------------  129 (230)
T ss_pred             CCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHH-------------------
Confidence            9999999886431  2344555566788999999999989999999999999999854432                   


Q ss_pred             hHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHH
Q psy7365         221 ILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWE  300 (601)
Q Consensus       221 ~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~  300 (601)
                                         +.+                                   |+++||||||+|||+.++..+++
T Consensus       130 -------------------~~~-----------------------------------p~lllLDEPt~gLD~~~~~~l~~  155 (230)
T TIGR01184       130 -------------------SIR-----------------------------------PKVLLLDEPFGALDALTRGNLQE  155 (230)
T ss_pred             -------------------HcC-----------------------------------CCEEEEcCCCcCCCHHHHHHHHH
Confidence                               232                                   58999999999999999999999


Q ss_pred             HHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccccc
Q psy7365         301 LLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  346 (601)
Q Consensus       301 ~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G  346 (601)
                      .|.++.    +..|+|||++||+++++..+||++++|.+|+++..+
T Consensus       156 ~l~~~~----~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~  197 (230)
T TIGR01184       156 ELMQIW----EEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG  197 (230)
T ss_pred             HHHHHH----HhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence            999873    234899999999999999999999999999988665

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=7.7e-35  Score=308.82  Aligned_cols=270  Identities=24%  Similarity=0.390  Sum_probs=199.0

Q ss_pred             cCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCc--ccccccccCCCCcc
Q psy7365         312 LSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSA--PQKSYIGYCPQFDA  382 (601)
Q Consensus       312 ~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~--~~~~~ig~v~Q~~~  382 (601)
                      +.++.++   +++++-..-++.+++++...   .|+++++       ++..|..++.|.+....  ..++.+||+||++.
T Consensus        51 y~~~~~l---~~is~~i~~Gei~gLlGpNG---aGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~  124 (340)
T PRK13536         51 YGDKAVV---NGLSFTVASGECFGLLGPNG---AGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDN  124 (340)
T ss_pred             ECCEEEE---eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCcc
Confidence            3344444   88999889999999997522   4555443       33445555555554322  24678999999999


Q ss_pred             cCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCC
Q psy7365         383 LNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD  462 (601)
Q Consensus       383 l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD  462 (601)
                      +++.+|++||+.++..+++.+..+..++++++++.++|.+..++++.+||||||||++||+||+++|++|||||||+|||
T Consensus       125 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD  204 (340)
T PRK13536        125 LDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLD  204 (340)
T ss_pred             CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence            99999999999988877776555556678899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHhCCceEEEEEecCCCchhHHHH
Q psy7365         463 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSADAQTY  542 (601)
Q Consensus       463 ~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~~~~~~l~i~~~~~~~~~~~~~  542 (601)
                      |.+++.++++|++++++|+|||++||++++++.+||||++|++|++++.|+++++.+.......+.+....  .......
T Consensus       205 ~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~--~~~~~~~  282 (340)
T PRK13536        205 PHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQVIEIYGGD--PHELSSL  282 (340)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhhccCceEEEEEcCC--hHHHHHH
Confidence            99999999999999878999999999999999999999999999999999999998765443333333211  1112111


Q ss_pred             HhhcCCCceeEEeeCcEEEEEEcCCcccHHHHHHHHHHccccCCCeeEEEecCCCCCCC
Q psy7365         543 LSLNLPVADLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLEDS  601 (601)
Q Consensus       543 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~i~~~~v~~~sLEdv  601 (601)
                      ..   +........+..+.+...    ....+...+.+.    . ..++.+.++||||+
T Consensus       283 ~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~----~-~~~~~~~~~sLEdv  329 (340)
T PRK13536        283 VK---PYARRIEVSGETLFCYAP----DPEQVRVQLRGR----A-GLRLLQRPPNLEDV  329 (340)
T ss_pred             hh---cccceEEecCCEEEEEeC----CHHHHHHHHHhc----c-CceEEEcCCCHHHH
Confidence            11   111122223333333221    234455555321    1 12677899999985

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=7.2e-36  Score=294.63  Aligned_cols=194  Identities=24%  Similarity=0.279  Sum_probs=164.4

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchH
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMT  124 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~  124 (601)
                      .+++|++.|++    .++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.....
T Consensus         3 ~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGs--GKSTL------l~~l~G~~~p~~G~v~~~g~~~~~~~~   70 (204)
T PRK13538          3 EARNLACERDE----RILFSGLSFTLNAGELVQIEGPNGA--GKTSL------LRILAGLARPDAGEVLWQGEPIRRQRD   70 (204)
T ss_pred             EEEEEEEEECC----EEEEecceEEECCCcEEEEECCCCC--CHHHH------HHHHhCCCCCCCcEEEECCEEcccchH
Confidence            47899999864    3599999999988      999999  56665      579999999999999999998865444


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcch
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNN  204 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~  204 (601)
                      ..++.++|++|++.+++.+|+.||+.++....+.   ....+++++++.+|+.+..++++.+||||||||+++|+++   
T Consensus        71 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al---  144 (204)
T PRK13538         71 EYHQDLLYLGHQPGIKTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLW---  144 (204)
T ss_pred             HhhhheEEeCCccccCcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHH---
Confidence            5567899999999999999999999987655432   2345688999999999888999999999999999754432   


Q ss_pred             hhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEe
Q psy7365         205 KAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILD  284 (601)
Q Consensus       205 ~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLD  284 (601)
                                                         +++                                   |+++|||
T Consensus       145 -----------------------------------~~~-----------------------------------p~llllD  154 (204)
T PRK13538        145 -----------------------------------LTR-----------------------------------APLWILD  154 (204)
T ss_pred             -----------------------------------hcC-----------------------------------CCEEEEe
Confidence                                               233                                   5899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEe
Q psy7365         285 EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII  337 (601)
Q Consensus       285 EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL  337 (601)
                      |||+|||+.++..++++|+++.     .+|.|+|++||+.+++....+|++.+
T Consensus       155 EPt~~LD~~~~~~l~~~l~~~~-----~~~~tiii~sh~~~~i~~~~~~~~~~  202 (204)
T PRK13538        155 EPFTAIDKQGVARLEALLAQHA-----EQGGMVILTTHQDLPVASDKVRKLRL  202 (204)
T ss_pred             CCCccCCHHHHHHHHHHHHHHH-----HCCCEEEEEecChhhhccCCceEEec
Confidence            9999999999999999999873     35789999999999999988888877

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.7e-36  Score=304.29  Aligned_cols=195  Identities=23%  Similarity=0.339  Sum_probs=172.7

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCc------ccccccccCCCCcccCCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSA------PQKSYIGYCPQFDALNDRLT  388 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~------~~~~~ig~v~Q~~~l~~~lT  388 (601)
                      .++++-..-++...+++...   .|+++++       +++.|+..+.|.++...      ..|++||++||+++++...|
T Consensus        23 ~~vsL~I~~GeI~GIIG~SG---AGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrT   99 (339)
T COG1135          23 DDVSLEIPKGEIFGIIGYSG---AGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRT   99 (339)
T ss_pred             ccceEEEcCCcEEEEEcCCC---CcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccch
Confidence            77888889999999997522   4455443       34556665666444321      24788999999999999999


Q ss_pred             HHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHH
Q psy7365         389 PREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRF  468 (601)
Q Consensus       389 v~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~  468 (601)
                      |++|+.|...+.|.++.+.++++.++|+.+||+++.+++|.+|||||||||+|||||+.+|++|++|||||.|||++.+.
T Consensus       100 V~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~s  179 (339)
T COG1135         100 VFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQS  179 (339)
T ss_pred             HHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         469 LWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       469 i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      +.++|++++++ |.||+++||.|+.+.++||||++|++|+++..|+..++..
T Consensus       180 IL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~  231 (339)
T COG1135         180 ILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFA  231 (339)
T ss_pred             HHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhc
Confidence            99999999876 9999999999999999999999999999999999888754

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.1e-35  Score=300.13  Aligned_cols=208  Identities=25%  Similarity=0.388  Sum_probs=175.5

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchH
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMT  124 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~  124 (601)
                      .++++++.|+.    .+.++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++... .
T Consensus         2 ~i~~l~~~~~~----~~il~~is~~i~~Ge~~~l~G~nGs--GKSTL------l~~i~G~~~~~~G~i~i~g~~~~~~-~   68 (237)
T TIGR00968         2 EIANISKRFGS----FQALDDVNLEVPTGSLVALLGPSGS--GKSTL------LRIIAGLEQPDSGRIRLNGQDATRV-H   68 (237)
T ss_pred             EEEEEEEEECC----eeeeeeEEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCceEEEECCEEcCcC-C
Confidence            37889998863    3599999999988      999999  57665      5799999999999999999987532 2


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcch
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNN  204 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~  204 (601)
                      ..++.++|+||++.+|+..|+.||+.+.....+.+.....+++.++++.+++.+..++.+.+|||||+||+++||+|   
T Consensus        69 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral---  145 (237)
T TIGR00968        69 ARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARAL---  145 (237)
T ss_pred             hhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHH---
Confidence            24678999999999999999999998876655555555556788999999999889999999999999999754432   


Q ss_pred             hhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEe
Q psy7365         205 KAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILD  284 (601)
Q Consensus       205 ~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLD  284 (601)
                                                         +.+                                   |+++|||
T Consensus       146 -----------------------------------~~~-----------------------------------p~llllD  155 (237)
T TIGR00968       146 -----------------------------------AVE-----------------------------------PQVLLLD  155 (237)
T ss_pred             -----------------------------------hcC-----------------------------------CCEEEEc
Confidence                                               222                                   5899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         285 EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       285 EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      |||+|||+.++..+++.|.++.    +..|+|+|++||+++++..+||++++|.+|+++..++.
T Consensus       156 EP~~~LD~~~~~~~~~~l~~~~----~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~  215 (237)
T TIGR00968       156 EPFGALDAKVRKELRSWLRKLH----DEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSP  215 (237)
T ss_pred             CCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCH
Confidence            9999999999999999999873    22379999999999999999999999999999876654

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-35  Score=301.70  Aligned_cols=209  Identities=26%  Similarity=0.357  Sum_probs=170.6

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCC--CC---CeeEEEEcc
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGML--PV---SSGTAKIYD  116 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~--~~---~~G~v~~~g  116 (601)
                      ++..+++|++.|++    .++++|+||++.+      +|||||  |||||      .++|+|+.  +|   ++|+|.++|
T Consensus         4 ~~l~~~~l~~~~~~----~~~l~~~s~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~~~p~~~~~G~i~~~g   71 (252)
T PRK14239          4 PILQVSDLSVYYNK----KKALNSVSLDFYPNEITALIGPSGS--GKSTL------LRSINRMNDLNPEVTITGSIVYNG   71 (252)
T ss_pred             ceEEEEeeEEEECC----eeeeeeeeEEEcCCcEEEEECCCCC--CHHHH------HHHHhcccccCCCCCccceEEECC
Confidence            34568999999863    3599999999988      999999  57665      67999995  36   599999999


Q ss_pred             ccCCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCCh-HHHHHHHHHHHHHcCCC----cccCCccccCC
Q psy7365         117 HDIRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK-DLAQLEISNMIGDLGIP----HKRTSLANTLS  188 (601)
Q Consensus       117 ~~~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~gl~----~~~~~~~~~LS  188 (601)
                      .++..   .....++.+||+||++.+|+ .||.||+.++....+... .....++.++++.+|+.    +..++.+.+||
T Consensus        72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS  150 (252)
T PRK14239         72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLS  150 (252)
T ss_pred             EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCC
Confidence            98743   22345678999999998887 899999998765555432 33456788899999974    35688999999


Q ss_pred             hHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHH
Q psy7365         189 GGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVT  268 (601)
Q Consensus       189 gG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~  268 (601)
                      ||||||+++||++                                      +.+                          
T Consensus       151 ~G~~qrv~laral--------------------------------------~~~--------------------------  166 (252)
T PRK14239        151 GGQQQRVCIARVL--------------------------------------ATS--------------------------  166 (252)
T ss_pred             HHHHHHHHHHHHH--------------------------------------hcC--------------------------
Confidence            9999999754432                                      232                          


Q ss_pred             HHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         269 VLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       269 ~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                               |+++||||||+|||+.++..++++|+++.      +++|||++||+++++...|||+++|.+|+++..++.
T Consensus       167 ---------p~llllDEPt~~LD~~~~~~l~~~l~~~~------~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~  231 (252)
T PRK14239        167 ---------PKIILLDEPTSALDPISAGKIEETLLGLK------DDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDT  231 (252)
T ss_pred             ---------CCEEEEcCCccccCHHHHHHHHHHHHHHh------hCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence                     58999999999999999999999999872      258999999999999999999999999999876643

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-35  Score=300.30  Aligned_cols=207  Identities=22%  Similarity=0.325  Sum_probs=170.9

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCC-----CeeEEEEcccc
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPV-----SSGTAKIYDHD  118 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~-----~~G~v~~~g~~  118 (601)
                      ..+++|++.|+.    ..+++|+||++.+      +|||||  |||||      .++|+|+++|     ++|+|.++|.+
T Consensus         4 l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~i~G~~~~~~~~~~~G~i~~~g~~   71 (250)
T PRK14240          4 ISVKDLDLFYGD----FQALKKINLDIEENQVTALIGPSGC--GKSTF------LRTLNRMNDLIPSVKIEGEVLLDGQD   71 (250)
T ss_pred             EEEEEEEEEECC----ceeeecceEEEcCCCEEEEECCCCC--CHHHH------HHHHhccccccCCCCCceEEEECCEE
Confidence            348999999863    3599999999988      999999  56665      6799999763     79999999998


Q ss_pred             CCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCC-ChHHHHHHHHHHHHHcCCC----cccCCccccCChH
Q psy7365         119 IRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIGDLGIP----HKRTSLANTLSGG  190 (601)
Q Consensus       119 ~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgG  190 (601)
                      +..   +....++.+||+||++.+|+ +|+.||+.++....+. +....++++.++++.+++.    +..++++.+||||
T Consensus        72 ~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G  150 (250)
T PRK14240         72 IYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGG  150 (250)
T ss_pred             ccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHH
Confidence            753   23345778999999998887 8999999987665554 3344567788899999874    4568899999999


Q ss_pred             HHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHH
Q psy7365         191 MQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVL  270 (601)
Q Consensus       191 ~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~  270 (601)
                      ||||+++||+|+                                      .+                            
T Consensus       151 ~~qrv~laral~--------------------------------------~~----------------------------  164 (250)
T PRK14240        151 QQQRLCIARALA--------------------------------------VE----------------------------  164 (250)
T ss_pred             HHHHHHHHHHHh--------------------------------------cC----------------------------
Confidence            999998654332                                      22                            


Q ss_pred             HhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         271 FAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       271 ~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                             |+++||||||+|||+.++..+++.|+++.      .++|||++||+++++..+||++++|.+|+++..++.
T Consensus       165 -------p~llllDEP~~~LD~~~~~~l~~~l~~~~------~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~  229 (250)
T PRK14240        165 -------PEVLLMDEPTSALDPISTLKIEELIQELK------KDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDT  229 (250)
T ss_pred             -------CCEEEEeCCCccCCHHHHHHHHHHHHHHh------cCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence                   58999999999999999999999999872      368999999999999999999999999999876643

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-35  Score=305.55  Aligned_cols=202  Identities=21%  Similarity=0.264  Sum_probs=165.8

Q ss_pred             chhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCC-----CCeeEEEEc
Q psy7365          47 AYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLP-----VSSGTAKIY  115 (601)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~-----~~~G~v~~~  115 (601)
                      ..+..+++|++.|+.    ..+++|+||++.+      +|||||  |||||      .++|+|+++     |++|+|.++
T Consensus        11 ~~~l~i~nl~~~~~~----~~il~~is~~i~~Ge~~~l~G~nGs--GKSTL------l~~l~Gl~~~~~~~p~~G~v~~~   78 (269)
T PRK14259         11 NIIISLQNVTISYGT----FEAVKNVFCDIPRGKVTALIGPSGC--GKSTV------LRSLNRMNDLIEGCSLKGRVLFD   78 (269)
T ss_pred             CceEEEEeEEEEECC----EEEEcceEEEEcCCCEEEEECCCCC--CHHHH------HHHHhccccccCCCCCceEEEEC
Confidence            345669999999864    4599999999988      999999  56665      679999987     699999999


Q ss_pred             cccCCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC----cccCCccccCC
Q psy7365         116 DHDIRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP----HKRTSLANTLS  188 (601)
Q Consensus       116 g~~~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LS  188 (601)
                      |.++..   .....++.+||+||++.+|+ .||.||+.|+....+.+. ...+++.++++.+++.    +..++++.+||
T Consensus        79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS  156 (269)
T PRK14259         79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARINGYTG-DMDELVERSLRKAAVWDECKDKLNESGYSLS  156 (269)
T ss_pred             CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcCCcH-HHHHHHHHHHHHhCCcchhhhhhCCCcccCC
Confidence            998742   33456678999999999887 499999998776555432 3445677889998863    45788999999


Q ss_pred             hHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHH
Q psy7365         189 GGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVT  268 (601)
Q Consensus       189 gG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~  268 (601)
                      ||||||+++||||                                      +.+                          
T Consensus       157 ~G~~qrl~laral--------------------------------------~~~--------------------------  172 (269)
T PRK14259        157 GGQQQRLCIARTI--------------------------------------AIE--------------------------  172 (269)
T ss_pred             HHHHHHHHHHHHH--------------------------------------hcC--------------------------
Confidence            9999999865432                                      233                          


Q ss_pred             HHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCc
Q psy7365         269 VLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK  341 (601)
Q Consensus       269 ~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~Gk  341 (601)
                               |+++||||||+|||+.++..++++|+++.      ++.|||++||+++++..+||++++|.+|+
T Consensus       173 ---------p~lllLDEPt~gLD~~~~~~l~~~l~~~~------~~~tiiivtH~~~~~~~~~d~i~~l~~~~  230 (269)
T PRK14259        173 ---------PEVILMDEPCSALDPISTLKIEETMHELK------KNFTIVIVTHNMQQAVRVSDMTAFFNAEE  230 (269)
T ss_pred             ---------CCEEEEcCCCccCCHHHHHHHHHHHHHHh------cCCEEEEEeCCHHHHHHhcCEEEEEeccc
Confidence                     58999999999999999999999999872      36899999999999999999999999744

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=1.6e-35  Score=302.40  Aligned_cols=211  Identities=22%  Similarity=0.286  Sum_probs=171.7

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEcccc----
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHD----  118 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~----  118 (601)
                      +..+++|++.|++    .++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.+    
T Consensus         6 ~l~~~~l~~~~~~----~~il~~is~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~~~~~   73 (258)
T PRK11701          6 LLSVRGLTKLYGP----RKGCRDVSFDLYPGEVLGIVGESGS--GKTTL------LNALSARLAPDAGEVHYRMRDGQLR   73 (258)
T ss_pred             eEEEeeeEEEcCC----ceeeeeeeEEEeCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCCEEEECCcccccc
Confidence            4569999999864    3599999999988      999999  56665      579999999999999999998    


Q ss_pred             -CCCc-hHH----hcccEEEEccCCC--CCCCCCHHHHHHHhHhhcCC-ChHHHHHHHHHHHHHcCCCc-ccCCccccCC
Q psy7365         119 -IRTD-MTT----IRRSLGVCPQYNA--LFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIGDLGIPH-KRTSLANTLS  188 (601)
Q Consensus       119 -~~~~-~~~----~~~~ig~v~Q~~~--~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS  188 (601)
                       +... ...    .++.+||+||++.  +++.+|+.+|+.+.....+. +..+.+.++.++++.+|+.+ ..++.+.+||
T Consensus        74 ~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS  153 (258)
T PRK11701         74 DLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFS  153 (258)
T ss_pred             ccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCC
Confidence             6431 222    3557999999984  67788999999765433332 23345667889999999974 7889999999


Q ss_pred             hHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHH
Q psy7365         189 GGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVT  268 (601)
Q Consensus       189 gG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~  268 (601)
                      ||||||+++||+|+                                      .                           
T Consensus       154 ~Gq~qrl~laral~--------------------------------------~---------------------------  168 (258)
T PRK11701        154 GGMQQRLQIARNLV--------------------------------------T---------------------------  168 (258)
T ss_pred             HHHHHHHHHHHHHh--------------------------------------c---------------------------
Confidence            99999998654332                                      2                           


Q ss_pred             HHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         269 VLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       269 ~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                              +|+++||||||+|||+.++..+++.|+++.    +..|.|||++||+++++...||++++|.+|+++..+++
T Consensus       169 --------~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~  236 (258)
T PRK11701        169 --------HPRLVFMDEPTGGLDVSVQARLLDLLRGLV----RELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT  236 (258)
T ss_pred             --------CCCEEEEcCCcccCCHHHHHHHHHHHHHHH----HhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence                    258999999999999999999999999873    22489999999999999999999999999999876643

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=2.2e-36  Score=284.82  Aligned_cols=213  Identities=23%  Similarity=0.336  Sum_probs=186.3

Q ss_pred             chhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCC
Q psy7365          47 AYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIR  120 (601)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~  120 (601)
                      .+...++||.|+||.+.    +|++|||.-..      +|-||+  ||||+      .|||+=+..|++|.|.++|..+.
T Consensus         4 ~~~l~v~dlHK~~G~~e----VLKGvSL~A~~GdVisIIGsSGS--GKSTf------LRCiN~LE~P~~G~I~v~geei~   71 (256)
T COG4598           4 ENALEVEDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGS--GKSTF------LRCINFLEKPSAGSIRVNGEEIR   71 (256)
T ss_pred             ccceehhHHHhhcccch----hhcceeeecCCCCEEEEecCCCC--chhHH------HHHHHhhcCCCCceEEECCeEEE
Confidence            45566899999998876    99999999877      999999  56654      57999999999999999999773


Q ss_pred             C--------------chHHhcccEEEEccCCCCCCCCCHHHHHHH-hHhhcCCChHHHHHHHHHHHHHcCCCcccCCccc
Q psy7365         121 T--------------DMTTIRRSLGVCPQYNALFDKLTVEEHMWF-YSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLAN  185 (601)
Q Consensus       121 ~--------------~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~  185 (601)
                      .              ....+|.++|+|||++.++.+|||.||+.- +....|+++.++.++++.+|+.+||.++.+.+|.
T Consensus        72 ~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~  151 (256)
T COG4598          72 LKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPA  151 (256)
T ss_pred             eeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCcc
Confidence            1              123467789999999999999999999875 4467899999999999999999999999999999


Q ss_pred             cCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHH
Q psy7365         186 TLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILV  265 (601)
Q Consensus       186 ~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  265 (601)
                      .||||||||++|||||                                      .                         
T Consensus       152 ~LSGGQQQR~aIARaL--------------------------------------a-------------------------  168 (256)
T COG4598         152 HLSGGQQQRVAIARAL--------------------------------------A-------------------------  168 (256)
T ss_pred             ccCchHHHHHHHHHHH--------------------------------------h-------------------------
Confidence            9999999999754422                                      1                         


Q ss_pred             HHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc
Q psy7365         266 AVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  345 (601)
Q Consensus       266 a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~  345 (601)
                                ..|+++++|||||+|||.-.-++.+.++++     .++|+|.+++||.|.|+.+....++++.+|.|-..
T Consensus       169 ----------meP~vmLFDEPTSALDPElVgEVLkv~~~L-----AeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~  233 (256)
T COG4598         169 ----------MEPEVMLFDEPTSALDPELVGEVLKVMQDL-----AEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEE  233 (256)
T ss_pred             ----------cCCceEeecCCcccCCHHHHHHHHHHHHHH-----HHhCCeEEEEeeehhHHHhhhhheEEeecceeccc
Confidence                      136899999999999999999999999998     45799999999999999999999999999999888


Q ss_pred             cCcc
Q psy7365         346 GSSV  349 (601)
Q Consensus       346 G~~~  349 (601)
                      |++.
T Consensus       234 G~P~  237 (256)
T COG4598         234 GPPE  237 (256)
T ss_pred             CChH
Confidence            8764

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-35  Score=306.39  Aligned_cols=211  Identities=21%  Similarity=0.286  Sum_probs=173.0

Q ss_pred             cchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCC-----CCeeEEEE
Q psy7365          46 GAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLP-----VSSGTAKI  114 (601)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~-----~~~G~v~~  114 (601)
                      +.++..+++|++.|+.    ..+++|+||++.+      +|||||  |||||      .++|+|+.+     |++|+|.+
T Consensus        36 ~~~~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~l~G~nGs--GKSTL------l~~L~Gl~~~~p~~~~~G~I~~  103 (286)
T PRK14275         36 GKPHVVAKNFSIYYGE----FEAVKKVNADILSKYVTAIIGPSGC--GKSTF------LRAINRMNDLIPSCHTTGALMF  103 (286)
T ss_pred             CceEEEEeeeEEEECC----EEEEeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcccccCCCCCCceEEEE
Confidence            5667779999999863    3499999999988      999999  56665      679999864     59999999


Q ss_pred             ccccCCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCC-hHHHHHHHHHHHHHcCCC----cccCCcccc
Q psy7365         115 YDHDIRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIGDLGIP----HKRTSLANT  186 (601)
Q Consensus       115 ~g~~~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~gl~----~~~~~~~~~  186 (601)
                      +|.++..   .....++.+||+||++.+|+. ||.||+.|+....+.. ....+.++.++++.+|+.    +..++++.+
T Consensus       104 ~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~  182 (286)
T PRK14275        104 DGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALG  182 (286)
T ss_pred             CCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhh
Confidence            9998743   222456789999999998875 9999999876555543 233456778899999873    567889999


Q ss_pred             CChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHH
Q psy7365         187 LSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVA  266 (601)
Q Consensus       187 LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a  266 (601)
                      ||||||||+++||+|                                      +.+                        
T Consensus       183 LSgGq~qrv~LAraL--------------------------------------~~~------------------------  200 (286)
T PRK14275        183 LSGGQQQRLCVARTL--------------------------------------AVE------------------------  200 (286)
T ss_pred             CCHHHHHHHHHHHHH--------------------------------------hcC------------------------
Confidence            999999999865433                                      233                        


Q ss_pred             HHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccccc
Q psy7365         267 VTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  346 (601)
Q Consensus       267 ~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G  346 (601)
                                 |+++||||||+|||+.++..+++.|+++.      .++|||++||+++++..+||++++|.+|++...+
T Consensus       201 -----------p~lllLDEPt~gLD~~~~~~l~~~L~~~~------~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g  263 (286)
T PRK14275        201 -----------PEILLLDEPTSALDPKATAKIEDLIQELR------GSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHA  263 (286)
T ss_pred             -----------CCEEEEeCCCccCCHHHHHHHHHHHHHHh------cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence                       58999999999999999999999999872      2589999999999999999999999999998766


Q ss_pred             Cc
Q psy7365         347 SS  348 (601)
Q Consensus       347 ~~  348 (601)
                      +.
T Consensus       264 ~~  265 (286)
T PRK14275        264 PT  265 (286)
T ss_pred             CH
Confidence            53

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-35  Score=300.89  Aligned_cols=208  Identities=22%  Similarity=0.301  Sum_probs=171.5

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCC-----CeeEEEEccc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPV-----SSGTAKIYDH  117 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~-----~~G~v~~~g~  117 (601)
                      ...++|+++.|+.    .++++|+||++.+      +||||+  |||||      .++|+|+++|     ++|+|.++|.
T Consensus         4 ~l~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~G~~~~~~~~~~~G~i~~~g~   71 (251)
T PRK14270          4 KMESKNLNLWYGE----KQALNDINLPIYENKITALIGPSGC--GKSTF------LRCLNRMNDLISNVKIEGEVLLDGK   71 (251)
T ss_pred             EEEEEEeEEEECC----eeeeeceeEEEcCCCEEEEECCCCC--CHHHH------HHHHHhccCcccCCCCccEEEECCE
Confidence            3458999999863    4599999999988      999999  57665      6799999875     8999999999


Q ss_pred             cCCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCC-ChHHHHHHHHHHHHHcCCC----cccCCccccCCh
Q psy7365         118 DIRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIGDLGIP----HKRTSLANTLSG  189 (601)
Q Consensus       118 ~~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSg  189 (601)
                      ++..   .....++.+||+||++.+|+ .|+.||+.|+....+. ...+...++.++++.+|+.    +..++++.+|||
T Consensus        72 ~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~  150 (251)
T PRK14270         72 NIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSG  150 (251)
T ss_pred             ecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCH
Confidence            8853   22345678999999998887 8999999987665554 3345556788899999874    457889999999


Q ss_pred             HHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHH
Q psy7365         190 GMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTV  269 (601)
Q Consensus       190 G~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~  269 (601)
                      |||||+++|+++                                      +.+                           
T Consensus       151 G~~qrv~laral--------------------------------------~~~---------------------------  165 (251)
T PRK14270        151 GQQQRLCIARTI--------------------------------------AVK---------------------------  165 (251)
T ss_pred             HHHHHHHHHHHH--------------------------------------hcC---------------------------
Confidence            999999754332                                      222                           


Q ss_pred             HHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         270 LFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       270 ~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                              |+++||||||+|||+.++..++++|+++.      ++.|+|++||+++++..+|||+++|.+|+++..+++
T Consensus       166 --------p~llllDEP~~~LD~~~~~~l~~~L~~~~------~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~  230 (251)
T PRK14270        166 --------PDVILMDEPTSALDPISTLKIEDLMVELK------KEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKT  230 (251)
T ss_pred             --------CCEEEEeCCcccCCHHHHHHHHHHHHHHH------hCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCH
Confidence                    58999999999999999999999999872      258999999999999999999999999999877654

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-35  Score=303.48  Aligned_cols=208  Identities=24%  Similarity=0.313  Sum_probs=169.6

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCC-----CCeeEEEEccc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLP-----VSSGTAKIYDH  117 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~-----~~~G~v~~~g~  117 (601)
                      +..+++|++.|++    .++++|+||++.+      +||||+  |||||      .++|+|+++     |++|+|.++|.
T Consensus        21 ~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~~~~~~~~~G~i~~~g~   88 (268)
T PRK14248         21 ILEVKDLSIYYGE----KRAVNDISMDIEKHAVTALIGPSGC--GKSTF------LRSINRMNDLIPSARSEGEILYEGL   88 (268)
T ss_pred             eEEEEEEEEEeCC----ceeeeceEEEEcCCCEEEEECCCCC--CHHHH------HHHHHhcccccCCCCCceEEEECCE
Confidence            4569999999863    4599999999988      999999  56665      679999865     79999999999


Q ss_pred             cCCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCC-hHHHHHHHHHHHHHcCCC----cccCCccccCCh
Q psy7365         118 DIRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIGDLGIP----HKRTSLANTLSG  189 (601)
Q Consensus       118 ~~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSg  189 (601)
                      ++..   .....++.+||+||++.+|+. |+.||+.++....+.. ....+.++.++++.+++.    +..++++.+|||
T Consensus        89 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg  167 (268)
T PRK14248         89 NILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSG  167 (268)
T ss_pred             EcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCH
Confidence            8853   123456789999999998875 9999999875444332 223445677889999984    456889999999


Q ss_pred             HHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHH
Q psy7365         190 GMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTV  269 (601)
Q Consensus       190 G~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~  269 (601)
                      |||||+++||+|+                                      .+                           
T Consensus       168 Gq~qrl~laral~--------------------------------------~~---------------------------  182 (268)
T PRK14248        168 GQQQRLCIARTLA--------------------------------------MK---------------------------  182 (268)
T ss_pred             HHHHHHHHHHHHh--------------------------------------CC---------------------------
Confidence            9999998654322                                      22                           


Q ss_pred             HHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         270 LFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       270 ~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                              |+++||||||+|||+.++..++++|+++.      ++.|||++||+++++..+|||+++|.+|+++..+..
T Consensus       183 --------p~lllLDEPt~~LD~~~~~~l~~~l~~~~------~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~  247 (268)
T PRK14248        183 --------PAVLLLDEPASALDPISNAKIEELITELK------EEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQT  247 (268)
T ss_pred             --------CCEEEEcCCCcccCHHHHHHHHHHHHHHh------cCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence                    58999999999999999999999999872      258999999999999999999999999999877643

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-35  Score=305.82  Aligned_cols=212  Identities=22%  Similarity=0.308  Sum_probs=173.9

Q ss_pred             CCccchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCC-----CCeeE
Q psy7365          43 ASMGAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLP-----VSSGT  111 (601)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~-----~~~G~  111 (601)
                      ++++.++..+++|++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++     |++|+
T Consensus        33 ~~~~~~~l~i~~l~~~~~~----~~il~~is~~i~~Ge~~~I~G~nGs--GKSTL------l~~l~Gl~~~~~~~p~~G~  100 (285)
T PRK14254         33 ASSGETVIEARDLNVFYGD----EQALDDVSMDIPENQVTAMIGPSGC--GKSTF------LRCINRMNDLIDAARVEGE  100 (285)
T ss_pred             ccCCCceEEEEEEEEEECC----EeeEeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhccCCcccCCCCceE
Confidence            4556777779999999864    3599999999988      999999  56665      579999987     69999


Q ss_pred             EEEccccCCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC----cccCCcc
Q psy7365         112 AKIYDHDIRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP----HKRTSLA  184 (601)
Q Consensus       112 v~~~g~~~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~  184 (601)
                      |.++|.++..   .....++.++|+||++.+|+. ||.||+.+.....+.+. ....++.++++.+|+.    +..++++
T Consensus       101 I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~  178 (285)
T PRK14254        101 LTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSG  178 (285)
T ss_pred             EEECCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCc
Confidence            9999998742   233456789999999988875 99999998766555543 4456788999999985    4578899


Q ss_pred             ccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhH
Q psy7365         185 NTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSIL  264 (601)
Q Consensus       185 ~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  264 (601)
                      .+||||||||+++||+|                                      +.+                      
T Consensus       179 ~~LSgGe~qrv~LAraL--------------------------------------~~~----------------------  198 (285)
T PRK14254        179 LDLSGGQQQRLCIARAI--------------------------------------APD----------------------  198 (285)
T ss_pred             ccCCHHHHHHHHHHHHH--------------------------------------HcC----------------------
Confidence            99999999999864432                                      232                      


Q ss_pred             HHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEE-EecCCccc
Q psy7365         265 VAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIA-IIAAGKLQ  343 (601)
Q Consensus       265 ~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~-vL~~GkIv  343 (601)
                                   |++|||||||+|||+.++..++++|+++.     . +.|||++||+++++..+|||++ +|.+|+++
T Consensus       199 -------------p~lLLLDEPts~LD~~~~~~l~~~L~~~~-----~-~~tiii~tH~~~~i~~~~dri~v~l~~G~i~  259 (285)
T PRK14254        199 -------------PEVILMDEPASALDPVATSKIEDLIEELA-----E-EYTVVIVTHNMQQAARISDKTAVFLTGGELV  259 (285)
T ss_pred             -------------CCEEEEeCCCCCCCHHHHHHHHHHHHHHh-----c-CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEE
Confidence                         58999999999999999999999999872     2 4799999999999999999975 57999987


Q ss_pred             cccC
Q psy7365         344 CCGS  347 (601)
Q Consensus       344 ~~G~  347 (601)
                      ..+.
T Consensus       260 ~~g~  263 (285)
T PRK14254        260 EFDD  263 (285)
T ss_pred             EeCC
Confidence            7654

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-35  Score=305.64  Aligned_cols=218  Identities=22%  Similarity=0.216  Sum_probs=173.2

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCC--------eeEEEEcc
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVS--------SGTAKIYD  116 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~--------~G~v~~~g  116 (601)
                      .++||++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|+        +|+|.++|
T Consensus         3 ~~~nl~~~~~~----~~il~~vsl~i~~Ge~~~l~G~nGs--GKSTL------l~~laG~~~p~~~~~~~~~~G~i~~~g   70 (272)
T PRK13547          3 TADHLHVARRH----RAILRDLSLRIEPGRVTALLGRNGA--GKSTL------LKALAGDLTGGGAPRGARVTGDVTLNG   70 (272)
T ss_pred             EEEEEEEEECC----EeEEecceEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCcccccccCCceEEEECC
Confidence            47899999854    3599999999988      999999  56665      67999999998        99999999


Q ss_pred             ccCCC-chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhc----CCChHHHHHHHHHHHHHcCCCcccCCccccCChHH
Q psy7365         117 HDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK----QVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGM  191 (601)
Q Consensus       117 ~~~~~-~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~  191 (601)
                      .++.. .....++.++|+||++.+++.+|+.||+.++....    +....+...++.++++.+|+.+..++++.+|||||
T Consensus        71 ~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~  150 (272)
T PRK13547         71 EPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGE  150 (272)
T ss_pred             EEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHH
Confidence            98753 33445667999999987666799999998754211    11123345568899999999999999999999999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||+++||+++.+                                    ..|                            
T Consensus       151 ~qrv~laral~~~------------------------------------~~~----------------------------  166 (272)
T PRK13547        151 LARVQFARVLAQL------------------------------------WPP----------------------------  166 (272)
T ss_pred             HHHHHHHHHHhcc------------------------------------ccc----------------------------
Confidence            9999865544310                                    000                            


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      +-+..+|++|||||||+|||+.++..++++|+++.    +..|+|||++||+++++..+||++++|.+|+++..++.
T Consensus       167 ~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~  239 (272)
T PRK13547        167 HDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLA----RDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAP  239 (272)
T ss_pred             cccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHH----HhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCH
Confidence            00012479999999999999999999999999873    22389999999999999999999999999999876653

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=100.00  E-value=3.4e-34  Score=347.16  Aligned_cols=135  Identities=22%  Similarity=0.282  Sum_probs=117.0

Q ss_pred             cCCCCCHHHHHHHhHHh---cCCChhHHHHHHHHHHHHcCCCcc-cccccCcCChHHHHHHHHHHHHh---CCCCEEEEE
Q psy7365         383 LNDRLTPREHLEFYSRV---RNLPSVLLNTIVNESLNKFALGHY-SDREVRTLSGGNKRKLSTAIALL---GNTPLIFLD  455 (601)
Q Consensus       383 l~~~lTv~E~L~~~~~~---~g~~~~~~~~~~~~lLe~~~L~~~-~~~~~~~LSgGqkQRl~lA~AL~---~~P~lLlLD  455 (601)
                      .|...||.|+|.+...-   +.....+..+++ ++|+.+||.+. .++++.+||||||||+.||++|+   .+|+++|||
T Consensus       759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILD  837 (1809)
T PRK00635        759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLD  837 (1809)
T ss_pred             ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEe
Confidence            45678899998775431   122334455566 58899999876 79999999999999999999997   699999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEe------CCEEEEecCHHHHHH
Q psy7365         456 EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMV------NGQFTCLGSATHLKS  519 (601)
Q Consensus       456 EPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~------~G~iv~~G~~~~L~~  519 (601)
                      |||+|||+.+++.++++|++++++|.|||++||+++++ .+||++++|.      +|++++.|+++++..
T Consensus       838 EPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~  906 (1809)
T PRK00635        838 EPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEELIH  906 (1809)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence            99999999999999999999988899999999999999 7999999996      799999999999865

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-35  Score=299.15  Aligned_cols=207  Identities=22%  Similarity=0.326  Sum_probs=170.1

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCC---CCC--CeeEEEEcccc
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGM---LPV--SSGTAKIYDHD  118 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl---~~~--~~G~v~~~g~~  118 (601)
                      ..++++++.|+.    .++++|+||++.+      +||||+  |||||      .++|+|+   ++|  ++|+|.++|.+
T Consensus         4 l~~~~~~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~i~Gl~~~~~~~~~~G~i~~~g~~   71 (250)
T PRK14245          4 IDARDVNFWYGD----FHALKGISMEIEEKSVVAFIGPSGC--GKSTF------LRLFNRMNDLIPATRLEGEIRIDGRN   71 (250)
T ss_pred             EEEEEEEEEECC----EeEEeeeeEEEeCCCEEEEECCCCC--CHHHH------HHHHhhhhcccCCCCCceEEEECCEe
Confidence            458999999864    4599999999988      999999  56665      5799997   565  59999999998


Q ss_pred             CCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCC-hHHHHHHHHHHHHHcCCCc----ccCCccccCChH
Q psy7365         119 IRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIGDLGIPH----KRTSLANTLSGG  190 (601)
Q Consensus       119 ~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~----~~~~~~~~LSgG  190 (601)
                      +..   .....++.+||+||++.+|+ .|+.||+.++....+.. .+....++.++++.+|+.+    ..++++.+||||
T Consensus        72 ~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G  150 (250)
T PRK14245         72 IYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGG  150 (250)
T ss_pred             cccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHH
Confidence            853   22455678999999998886 69999999876555443 2345567889999999853    568899999999


Q ss_pred             HHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHH
Q psy7365         191 MQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVL  270 (601)
Q Consensus       191 ~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~  270 (601)
                      ||||+++||+|                                      +.+                            
T Consensus       151 ~~qrv~laral--------------------------------------~~~----------------------------  164 (250)
T PRK14245        151 QQQRLCIARAM--------------------------------------AVS----------------------------  164 (250)
T ss_pred             HHHHHHHHHHH--------------------------------------hcC----------------------------
Confidence            99999865432                                      222                            


Q ss_pred             HhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         271 FAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       271 ~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                             |+++||||||+|||+.++..+++.|+++.      +|+|||++||+++++..+|||+++|.+|+++..+..
T Consensus       165 -------p~lllLDEPt~~LD~~~~~~l~~~l~~~~------~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~  229 (250)
T PRK14245        165 -------PSVLLMDEPASALDPISTAKVEELIHELK------KDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDT  229 (250)
T ss_pred             -------CCEEEEeCCCccCCHHHHHHHHHHHHHHh------cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCH
Confidence                   58999999999999999999999999872      368999999999999999999999999999877654

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.1e-35  Score=301.58  Aligned_cols=214  Identities=23%  Similarity=0.311  Sum_probs=180.9

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCC-C----CeeEEEEccccC
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLP-V----SSGTAKIYDHDI  119 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~-~----~~G~v~~~g~~~  119 (601)
                      .++||+..|...++...+|+||||++.+      +|-|||  |||     |++ +.|+|++| |    .+|+|.++|.++
T Consensus         3 ~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGs--GKS-----~~~-~aim~llp~~~~~i~~G~i~f~g~~l   74 (316)
T COG0444           3 EVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGS--GKS-----VLA-KAIMGLLPKPNARIVGGEILFDGKDL   74 (316)
T ss_pred             eEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCC--CHH-----HHH-HHHHhccCCCCCeEeeeEEEECCccc
Confidence            4799999998877789999999999988      899999  455     455 47899998 4    689999999988


Q ss_pred             CCchH----Hh-cccEEEEccCC--CCCCCCCHHHHHHHhHhhcC-C-ChHHHHHHHHHHHHHcCCCc---ccCCccccC
Q psy7365         120 RTDMT----TI-RRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQ-V-PKDLAQLEISNMIGDLGIPH---KRTSLANTL  187 (601)
Q Consensus       120 ~~~~~----~~-~~~ig~v~Q~~--~~~~~~tv~e~l~~~~~~~~-~-~~~~~~~~~~~~l~~~gl~~---~~~~~~~~L  187 (601)
                      ..-..    .+ .+.|+++||+|  .+.|-+||.+++.-....++ . .++++++++.++|+.+||++   ..+++|++|
T Consensus        75 ~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhel  154 (316)
T COG0444          75 LSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHEL  154 (316)
T ss_pred             ccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCccc
Confidence            64221    23 35799999998  58999999999987766543 3 46778899999999999996   469999999


Q ss_pred             ChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHH
Q psy7365         188 SGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAV  267 (601)
Q Consensus       188 SgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~  267 (601)
                      ||||+|||.||                                      ++++.+                         
T Consensus       155 SGGMrQRV~IA--------------------------------------mala~~-------------------------  171 (316)
T COG0444         155 SGGMRQRVMIA--------------------------------------MALALN-------------------------  171 (316)
T ss_pred             CCcHHHHHHHH--------------------------------------HHHhCC-------------------------
Confidence            99999998642                                      223333                         


Q ss_pred             HHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         268 TVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       268 ~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                                |++||.||||++||...+.++.++|++++    ++.|.|+|++|||+..+..+||||+||.+|+++..|+
T Consensus       172 ----------P~LlIADEPTTALDvt~QaqIl~Ll~~l~----~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~  237 (316)
T COG0444         172 ----------PKLLIADEPTTALDVTVQAQILDLLKELQ----REKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGP  237 (316)
T ss_pred             ----------CCEEEeCCCcchhhHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCC
Confidence                      59999999999999999999999999995    3469999999999999999999999999999999887


Q ss_pred             cc
Q psy7365         348 SV  349 (601)
Q Consensus       348 ~~  349 (601)
                      ..
T Consensus       238 ~~  239 (316)
T COG0444         238 VE  239 (316)
T ss_pred             HH
Confidence            53

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.4e-35  Score=298.67  Aligned_cols=207  Identities=22%  Similarity=0.309  Sum_probs=170.0

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCC-----eeEEEEcccc
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVS-----SGTAKIYDHD  118 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~-----~G~v~~~g~~  118 (601)
                      ..+++|++.|++    ..+++|+||++.+      +||||+  |||||      .++|+|+++|+     +|+|.++|.+
T Consensus         5 l~~~~l~~~~~~----~~il~~~s~~i~~G~~~~i~G~nGs--GKSTL------l~~l~Gl~~~~~~~~~~G~v~~~g~~   72 (251)
T PRK14249          5 IKIRGVNFFYHK----HQVLKNINMDFPERQITAIIGPSGC--GKSTL------LRALNRMNDIVSGARLEGAVLLDNEN   72 (251)
T ss_pred             EEEEEEEEEECC----eeEecceEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcccCccccCCcccEEEECCEE
Confidence            348999999864    3599999999988      999999  56665      57999999997     6999999998


Q ss_pred             CCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCCh-HHHHHHHHHHHHHcCCC----cccCCccccCChH
Q psy7365         119 IRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK-DLAQLEISNMIGDLGIP----HKRTSLANTLSGG  190 (601)
Q Consensus       119 ~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgG  190 (601)
                      +..   .....++.+||+||++.+|+. |+.||+.|.....+... +....++.++++.+|+.    +..++.+.+||||
T Consensus        73 ~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G  151 (251)
T PRK14249         73 IYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGG  151 (251)
T ss_pred             ccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHH
Confidence            743   223457789999999998875 99999998766555432 33455677888888874    4578999999999


Q ss_pred             HHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHH
Q psy7365         191 MQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVL  270 (601)
Q Consensus       191 ~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~  270 (601)
                      ||||+++||+|                                      +.+                            
T Consensus       152 q~qrv~laral--------------------------------------~~~----------------------------  165 (251)
T PRK14249        152 QQQRLCIARVL--------------------------------------AIE----------------------------  165 (251)
T ss_pred             HHHHHHHHHHH--------------------------------------hcC----------------------------
Confidence            99999865432                                      222                            


Q ss_pred             HhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         271 FAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       271 ~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                             |+++||||||+|||+.++..++++|+++     + +|+|||++||+++++..+||++++|.+|++...+++
T Consensus       166 -------p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~-~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~  230 (251)
T PRK14249        166 -------PEVILMDEPCSALDPVSTMRIEELMQEL-----K-QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRT  230 (251)
T ss_pred             -------CCEEEEeCCCccCCHHHHHHHHHHHHHH-----h-cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCH
Confidence                   5899999999999999999999999987     2 478999999999999999999999999998876654

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.1e-35  Score=329.15  Aligned_cols=216  Identities=21%  Similarity=0.269  Sum_probs=174.5

Q ss_pred             cchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCC-CCeeEEEEcccc
Q psy7365          46 GAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLP-VSSGTAKIYDHD  118 (601)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~-~~~G~v~~~g~~  118 (601)
                      +..+..+++|++.|+.. ++..+++|+||++.+      +|||||  |||||      .++|+|+++ |++|+|.++|.+
T Consensus       256 ~~~~l~~~~l~~~~~~~-~~~~vl~~vsl~i~~Ge~~~l~G~NGs--GKSTL------lk~i~Gl~~~~~~G~i~~~g~~  326 (506)
T PRK13549        256 GEVILEVRNLTAWDPVN-PHIKRVDDVSFSLRRGEILGIAGLVGA--GRTEL------VQCLFGAYPGRWEGEIFIDGKP  326 (506)
T ss_pred             CCceEEEecCccccccc-cccccccceeeEEcCCcEEEEeCCCCC--CHHHH------HHHHhCCCCCCCCcEEEECCEE
Confidence            34456699999998421 234589999999988      999999  57665      679999998 599999999998


Q ss_pred             CCCc--hHHhcccEEEEccCC---CCCCCCCHHHHHHHhHh--hcC---CChHHHHHHHHHHHHHcCCC-cccCCccccC
Q psy7365         119 IRTD--MTTIRRSLGVCPQYN---ALFDKLTVEEHMWFYSQ--LKQ---VPKDLAQLEISNMIGDLGIP-HKRTSLANTL  187 (601)
Q Consensus       119 ~~~~--~~~~~~~ig~v~Q~~---~~~~~~tv~e~l~~~~~--~~~---~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~L  187 (601)
                      +...  ....++.+||+||++   .+|+++||.||+.++..  ..+   .+....+.++.++++.+|+. +..++++.+|
T Consensus       327 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L  406 (506)
T PRK13549        327 VKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARL  406 (506)
T ss_pred             CCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccC
Confidence            7532  233466799999996   47889999999987532  211   23344556788999999996 5789999999


Q ss_pred             ChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHH
Q psy7365         188 SGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAV  267 (601)
Q Consensus       188 SgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~  267 (601)
                      ||||||||++||++                                      +.+                         
T Consensus       407 SgG~kqrv~lA~al--------------------------------------~~~-------------------------  423 (506)
T PRK13549        407 SGGNQQKAVLAKCL--------------------------------------LLN-------------------------  423 (506)
T ss_pred             CHHHHHHHHHHHHH--------------------------------------hhC-------------------------
Confidence            99999999865432                                      222                         


Q ss_pred             HHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         268 TVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       268 ~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                                |++|||||||+|||+.+++.++++|.++.     .+|+|||++|||++++..+||++++|.+|+++..++
T Consensus       424 ----------p~lllLDEPt~~LD~~~~~~l~~~l~~l~-----~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~  488 (506)
T PRK13549        424 ----------PKILILDEPTRGIDVGAKYEIYKLINQLV-----QQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLI  488 (506)
T ss_pred             ----------CCEEEEcCCCCCcCHhHHHHHHHHHHHHH-----HCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEec
Confidence                      58999999999999999999999999873     358999999999999999999999999999887664


Q ss_pred             c
Q psy7365         348 S  348 (601)
Q Consensus       348 ~  348 (601)
                      .
T Consensus       489 ~  489 (506)
T PRK13549        489 N  489 (506)
T ss_pred             c
Confidence            3

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.9e-35  Score=297.93  Aligned_cols=208  Identities=24%  Similarity=0.343  Sum_probs=170.9

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCC-----CeeEEEEccc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPV-----SSGTAKIYDH  117 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~-----~~G~v~~~g~  117 (601)
                      +..+++|++.|++    .++++|+||++.+      +||||+  |||||      .++|+|+++|     ++|+|.++|.
T Consensus         3 ~l~~~~l~~~~~~----~~~l~~i~~~i~~Ge~~~i~G~nGs--GKSTL------l~~i~Gl~~~~~~~~~~G~i~i~g~   70 (250)
T PRK14262          3 IIEIENFSAYYGE----KKAVKNVTMKIFKNQITAIIGPSGC--GKTTL------LRSINRMNDHIPGFRVEGKIYFKGQ   70 (250)
T ss_pred             eEEEEeeEEEeCC----ceeEeeeeEeecCCCEEEEECCCCC--CHHHH------HHHHhccccCCCCCCcceEEEECCE
Confidence            3458999999863    3599999999988      999999  56665      6799999984     8999999999


Q ss_pred             cCCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCC-hHHHHHHHHHHHHHcCCCc----ccCCccccCCh
Q psy7365         118 DIRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIGDLGIPH----KRTSLANTLSG  189 (601)
Q Consensus       118 ~~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~----~~~~~~~~LSg  189 (601)
                      ++..   .....++.++|+||++.+|+ .|++||+.++....+.. ....++++.++++.+|+..    ..++.+.+|||
T Consensus        71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~  149 (250)
T PRK14262         71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSG  149 (250)
T ss_pred             EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCH
Confidence            8753   12345678999999998887 89999999876554443 2344566788999999863    47889999999


Q ss_pred             HHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHH
Q psy7365         190 GMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTV  269 (601)
Q Consensus       190 G~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~  269 (601)
                      |||||+++||+|                                      +.+                           
T Consensus       150 Gq~qr~~la~al--------------------------------------~~~---------------------------  164 (250)
T PRK14262        150 GQQQRLCIARAL--------------------------------------AVE---------------------------  164 (250)
T ss_pred             HHHHHHHHHHHH--------------------------------------hCC---------------------------
Confidence            999999754432                                      222                           


Q ss_pred             HHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         270 LFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       270 ~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                              |+++||||||+|||+.++..+++.|.++.      +++|+|++||+++++..+||++++|.+|+++..++.
T Consensus       165 --------p~llllDEP~~~LD~~~~~~l~~~l~~~~------~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~  229 (250)
T PRK14262        165 --------PEVILLDEPTSALDPIATQRIEKLLEELS------ENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPT  229 (250)
T ss_pred             --------CCEEEEeCCccccCHHHHHHHHHHHHHHh------cCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCH
Confidence                    58999999999999999999999999872      368999999999999999999999999999877654

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.5e-35  Score=297.63  Aligned_cols=208  Identities=23%  Similarity=0.316  Sum_probs=170.1

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCC-----eeEEEEcccc
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVS-----SGTAKIYDHD  118 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~-----~G~v~~~g~~  118 (601)
                      ..++||++.|+.    .++++|+||++.+      +||||+  |||||      .++|+|+++|+     +|+|.++|.+
T Consensus         5 l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~i~G~~~~~~~~~~~G~i~~~g~~   72 (252)
T PRK14272          5 LSAQDVNIYYGD----KQAVKNVNLDVQRGTVNALIGPSGC--GKTTF------LRAINRMHDLTPGARVTGRILLDGQD   72 (252)
T ss_pred             EEEeeeEEEECC----EEeeccceEEEcCCCEEEEECCCCC--CHHHH------HHHHhccCCCCcCCCCceeEEECCEE
Confidence            348999999863    4699999999988      999999  56665      57999999874     8999999998


Q ss_pred             CCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCC-hHHHHHHHHHHHHHcCCC----cccCCccccCChH
Q psy7365         119 IRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIGDLGIP----HKRTSLANTLSGG  190 (601)
Q Consensus       119 ~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgG  190 (601)
                      +..   .....++.+||+||++.+|+.+|+.||+.++....+.+ .++..+++.++++.+++.    +..++++.+||||
T Consensus        73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G  152 (252)
T PRK14272         73 IYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGG  152 (252)
T ss_pred             cccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHH
Confidence            753   23345678999999999999999999998766544432 334456677778888763    4568899999999


Q ss_pred             HHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHH
Q psy7365         191 MQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVL  270 (601)
Q Consensus       191 ~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~  270 (601)
                      ||||+++||+|                                      +.+                            
T Consensus       153 ~~qrv~laral--------------------------------------~~~----------------------------  166 (252)
T PRK14272        153 QQQRLCIARAL--------------------------------------AVE----------------------------  166 (252)
T ss_pred             HHHHHHHHHHH--------------------------------------hcC----------------------------
Confidence            99999854432                                      232                            


Q ss_pred             HhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         271 FAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       271 ~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                             |+++||||||+|||+.++..+.+.|+++.      +++|+|++||+++++..+||++++|.+|+++..+++
T Consensus       167 -------p~llllDEP~~~LD~~~~~~l~~~l~~~~------~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~  231 (252)
T PRK14272        167 -------PEILLMDEPTSALDPASTARIEDLMTDLK------KVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPT  231 (252)
T ss_pred             -------CCEEEEeCCCccCCHHHHHHHHHHHHHHh------cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence                   58999999999999999999999999872      368999999999999999999999999999877653

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=100.00  E-value=3.6e-35  Score=294.83  Aligned_cols=195  Identities=21%  Similarity=0.280  Sum_probs=161.5

Q ss_pred             eeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCC----CeeEEEEccccCCCchHHhcccEEEEccCC
Q psy7365          68 GISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPV----SSGTAKIYDHDIRTDMTTIRRSLGVCPQYN  137 (601)
Q Consensus        68 ~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~----~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~  137 (601)
                      +++|+||++.+      +||||+  |||||      .++|+|+++|    ++|+|.++|+++... ...++.+||+||++
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~p~~~~~~G~i~~~g~~~~~~-~~~~~~i~~~~q~~   71 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGS--GKSLT------CLAILGLLPPGLTQTSGEILLDGRPLLPL-SIRGRHIATIMQNP   71 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCCCCccCccccEEEECCEechhh-hhhhheeEEEecCc
Confidence            47899999988      999999  57665      6799999999    899999999987532 22345799999998


Q ss_pred             C--CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC---cccCCccccCChHHHhhhhchhhhcchhhHHHHHH
Q psy7365         138 A--LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP---HKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVS  212 (601)
Q Consensus       138 ~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~---~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~  212 (601)
                      .  +++.+|+.||+.+.....+......+.++.++++.+|+.   +..++.+.+||||||||+++||+|           
T Consensus        72 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral-----------  140 (230)
T TIGR02770        72 RTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALAL-----------  140 (230)
T ss_pred             hhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHH-----------
Confidence            5  456789999998876555544445566789999999998   567899999999999999864432           


Q ss_pred             HhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCH
Q psy7365         213 FMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDP  292 (601)
Q Consensus       213 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~  292 (601)
                                                 +.+                                   |+++||||||+|||+
T Consensus       141 ---------------------------~~~-----------------------------------p~vllLDEPt~~LD~  158 (230)
T TIGR02770       141 ---------------------------LLE-----------------------------------PPFLIADEPTTDLDV  158 (230)
T ss_pred             ---------------------------hcC-----------------------------------CCEEEEcCCccccCH
Confidence                                       232                                   589999999999999


Q ss_pred             HHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         293 YSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       293 ~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      .++..+++.|+++.    +..|+|||++||+++++..+||++++|.+|++...+++
T Consensus       159 ~~~~~l~~~l~~~~----~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~  210 (230)
T TIGR02770       159 VNQARVLKLLRELR----QLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTV  210 (230)
T ss_pred             HHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence            99999999999873    22488999999999999999999999999999876654

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.3e-35  Score=300.32  Aligned_cols=208  Identities=23%  Similarity=0.271  Sum_probs=171.8

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCC-----CCeeEEEEccc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLP-----VSSGTAKIYDH  117 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~-----~~~G~v~~~g~  117 (601)
                      +..+++|++.|+.    .++++|+||++.+      +|||||  |||||      .++|+|+++     |++|+|.++|.
T Consensus        20 ~l~~~nl~~~~~~----~~il~~vsl~i~~Ge~~~I~G~nGs--GKSTL------l~~l~Gl~~~~~~~~~~G~i~~~g~   87 (267)
T PRK14237         20 ALSTKDLHVYYGK----KEAIKGIDMQFEKNKITALIGPSGS--GKSTY------LRSLNRMNDTIDIARVTGQILYRGI   87 (267)
T ss_pred             EEEEeeEEEEECC----eeeEeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHHhccCccCCCCcceEEEECCE
Confidence            3569999999853    4699999999988      999999  56665      579999996     58999999999


Q ss_pred             cCCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCC-ChHHHHHHHHHHHHHcCCC----cccCCccccCCh
Q psy7365         118 DIRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIGDLGIP----HKRTSLANTLSG  189 (601)
Q Consensus       118 ~~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSg  189 (601)
                      ++..   .....++.+||+||++.+|+ .||.||+.++....+. +..+...++.++++.+++.    +..++++.+|||
T Consensus        88 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~  166 (267)
T PRK14237         88 DINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSG  166 (267)
T ss_pred             EcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCH
Confidence            8743   23345778999999998887 6999999987654443 3344566788999999985    457889999999


Q ss_pred             HHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHH
Q psy7365         190 GMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTV  269 (601)
Q Consensus       190 G~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~  269 (601)
                      |||||+++||++                                      +.                            
T Consensus       167 G~~qrl~laral--------------------------------------~~----------------------------  180 (267)
T PRK14237        167 GQQQRLCIARAI--------------------------------------AV----------------------------  180 (267)
T ss_pred             HHHHHHHHHHHH--------------------------------------hc----------------------------
Confidence            999999864432                                      22                            


Q ss_pred             HHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         270 LFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       270 ~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                             +|+++||||||+|||+.++..++++|.++.      ++.|||++||+++++..+||++++|.+|+++..++.
T Consensus       181 -------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~------~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~  246 (267)
T PRK14237        181 -------KPDILLMDEPASALDPISTMQLEETMFELK------KNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKT  246 (267)
T ss_pred             -------CCCEEEEeCCcccCCHHHHHHHHHHHHHHh------cCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence                   258999999999999999999999999872      368999999999999999999999999999877654

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.8e-35  Score=296.47  Aligned_cols=207  Identities=24%  Similarity=0.329  Sum_probs=170.1

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCC-----CeeEEEEcccc
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPV-----SSGTAKIYDHD  118 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~-----~~G~v~~~g~~  118 (601)
                      ..++++++.|++    ..+++|+||++.+      +||||+  |||||      .++|+|+++|     ++|+|.++|.+
T Consensus         4 l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~~~~~~~~~G~v~~~g~~   71 (249)
T PRK14253          4 FNIENLDLFYGE----NQALKSINLPIPARQVTALIGPSGC--GKSTL------LRCLNRMNDLIEGVKITGKLTMDGED   71 (249)
T ss_pred             EEEeccEEEECC----eeeeecceEEecCCCEEEEECCCCC--CHHHH------HHHHHhhcccccCCCCceEEEECCEE
Confidence            458999999863    4599999999988      999999  56665      5799999986     59999999998


Q ss_pred             CCC--chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCC-hHHHHHHHHHHHHHcCCC----cccCCccccCChHH
Q psy7365         119 IRT--DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIGDLGIP----HKRTSLANTLSGGM  191 (601)
Q Consensus       119 ~~~--~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgG~  191 (601)
                      +..  +....++.+||+||++.+|+ .||.||+.+.....+.. ....++++.++++.+|+.    +..++++.+|||||
T Consensus        72 ~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~  150 (249)
T PRK14253         72 IYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQ  150 (249)
T ss_pred             cccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHH
Confidence            742  33456778999999999887 89999998875544443 334456778889999875    35678899999999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||+++||+|                                      +.+                             
T Consensus       151 ~qrv~laral--------------------------------------~~~-----------------------------  163 (249)
T PRK14253        151 QQRLCIARTI--------------------------------------AME-----------------------------  163 (249)
T ss_pred             HHHHHHHHHH--------------------------------------HcC-----------------------------
Confidence            9999865432                                      232                             


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                            |+++||||||+|||+.++..++++|+++.      ++.|||++||+++++..+||++++|.+|+++..++.
T Consensus       164 ------p~llllDEP~~~LD~~~~~~l~~~l~~~~------~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~  228 (249)
T PRK14253        164 ------PDVILMDEPTSALDPIATHKIEELMEELK------KNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDT  228 (249)
T ss_pred             ------CCEEEEeCCCccCCHHHHHHHHHHHHHHh------cCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence                  58999999999999999999999999872      258999999999999999999999999999876643

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.1e-35  Score=297.23  Aligned_cols=207  Identities=25%  Similarity=0.345  Sum_probs=170.1

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCC-----CCeeEEEEcccc
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLP-----VSSGTAKIYDHD  118 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~-----~~~G~v~~~g~~  118 (601)
                      +.++++++.|+.    ..+++|+||++.+      +||||+  |||||      .++|+|+++     |++|+|.++|.+
T Consensus         5 l~~~~l~~~~~~----~~~l~~~sl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~~~p~~~~~G~v~i~g~~   72 (251)
T PRK14251          5 ISAKDVHLSYGN----YEALHGISLDFEEKELTALIGPSGC--GKSTF------LRCLNRMNDDIENIKITGEIKFEGQN   72 (251)
T ss_pred             EEEEeeEEEECC----eeeeeeeeEEEcCCCEEEEECCCCC--CHHHH------HHHHhhccccccCCCcceEEEECCEE
Confidence            458999999863    4599999999988      999999  56665      579999997     489999999998


Q ss_pred             CCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCC-hHHHHHHHHHHHHHcCCC----cccCCccccCChH
Q psy7365         119 IRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIGDLGIP----HKRTSLANTLSGG  190 (601)
Q Consensus       119 ~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgG  190 (601)
                      +..   +....++.+||+||++.+|+ .||+||+.++....+.. .+..+.++.++++.+|+.    ...++.+.+||||
T Consensus        73 ~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G  151 (251)
T PRK14251         73 IYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGG  151 (251)
T ss_pred             cccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHH
Confidence            743   22345678999999998886 79999998876555543 333456778899999984    4568899999999


Q ss_pred             HHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHH
Q psy7365         191 MQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVL  270 (601)
Q Consensus       191 ~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~  270 (601)
                      ||||+++||+|+                                      .                             
T Consensus       152 q~qr~~laral~--------------------------------------~-----------------------------  164 (251)
T PRK14251        152 QQQRICIARALA--------------------------------------V-----------------------------  164 (251)
T ss_pred             HHHHHHHHHHHh--------------------------------------c-----------------------------
Confidence            999997544322                                      2                             


Q ss_pred             HhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         271 FAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       271 ~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                            +|+++||||||+|||+.+++.+++.|+++.      ++.|||++||+++++..+||++++|.+|+++..++.
T Consensus       165 ------~p~llllDEP~~~LD~~~~~~l~~~l~~~~------~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~  230 (251)
T PRK14251        165 ------RPKVVLLDEPTSALDPISSSEIEETLMELK------HQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPT  230 (251)
T ss_pred             ------CCCEEEecCCCccCCHHHHHHHHHHHHHHH------cCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCH
Confidence                  258999999999999999999999999872      368999999999999999999999999999876643

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=100.00  E-value=5.4e-35  Score=292.01  Aligned_cols=202  Identities=24%  Similarity=0.327  Sum_probs=163.3

Q ss_pred             hhcccccccccC--CC-ccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEcc--c--
Q psy7365          51 LFESLSENRDKL--GI-DSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYD--H--  117 (601)
Q Consensus        51 ~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g--~--  117 (601)
                      .++||++.|+..  +. ...+++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|  .  
T Consensus         3 ~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGs--GKSTL------l~~i~G~~~~~~G~i~~~~~g~~~   74 (224)
T TIGR02324         3 EVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGA--GKSTL------LKSLYANYLPDSGRILVRHEGAWV   74 (224)
T ss_pred             EEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCCeEEEecCCCcc
Confidence            478999998642  11 24699999999988      999999  56665      5799999999999999984  3  


Q ss_pred             cCCC-chH---H-hcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcc-cCCccccCChHH
Q psy7365         118 DIRT-DMT---T-IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHK-RTSLANTLSGGM  191 (601)
Q Consensus       118 ~~~~-~~~---~-~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~  191 (601)
                      ++.. +..   . .++.+||+||++.+++.+||.||+.+.....+.......+++.++++.+|+.+. .++++.+|||||
T Consensus        75 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~  154 (224)
T TIGR02324        75 DLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGE  154 (224)
T ss_pred             chhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHH
Confidence            4422 111   1 245799999999999999999999886555555555556778899999999864 588999999999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||+++||++                                      +.+                             
T Consensus       155 ~qrl~laral--------------------------------------~~~-----------------------------  167 (224)
T TIGR02324       155 QQRVNIARGF--------------------------------------IAD-----------------------------  167 (224)
T ss_pred             HHHHHHHHHH--------------------------------------hcC-----------------------------
Confidence            9999754432                                      222                             


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEec
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA  338 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~  338 (601)
                            |+++||||||+|||+.+++.+.+.|+++.     .+|+|+|++||+.+++..+||+++.+.
T Consensus       168 ------p~llllDEPt~~LD~~~~~~l~~~l~~~~-----~~g~tii~vsH~~~~~~~~~d~i~~~~  223 (224)
T TIGR02324       168 ------YPILLLDEPTASLDAANRQVVVELIAEAK-----ARGAALIGIFHDEEVRELVADRVMDVT  223 (224)
T ss_pred             ------CCEEEEcCCcccCCHHHHHHHHHHHHHHH-----hcCCEEEEEeCCHHHHHHhcceeEecC
Confidence                  58999999999999999999999999873     358999999999999999999998763

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.5e-35  Score=297.13  Aligned_cols=206  Identities=22%  Similarity=0.321  Sum_probs=168.0

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCC-----CCeeEEEEccccC
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLP-----VSSGTAKIYDHDI  119 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~-----~~~G~v~~~g~~~  119 (601)
                      .+++|++.|++    .++++|+||++.+      +|||||  |||||      .++|+|+.+     |++|+|+++|.++
T Consensus         7 ~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~I~G~nGs--GKSTL------l~~i~G~~~~~~~~~~~G~i~~~g~~i   74 (251)
T PRK14244          7 SVKNLNLWYGS----KQILFDINLDIYKREVTAFIGPSGC--GKSTF------LRCFNRMNDFVPNCKVKGELDIDGIDV   74 (251)
T ss_pred             EeeeEEEEECC----eeeeeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHHhhcccCCCCCcceEEEECCEeh
Confidence            37899998853    4699999999988      999999  56665      579999986     4799999999887


Q ss_pred             CC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCC--ChHHHHHHHHHHHHHcCCCc----ccCCccccCChH
Q psy7365         120 RT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV--PKDLAQLEISNMIGDLGIPH----KRTSLANTLSGG  190 (601)
Q Consensus       120 ~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~gl~~----~~~~~~~~LSgG  190 (601)
                      ..   ....+++.+||+||++.+|+. |+.||+.+.....+.  .....+.++.++++.+|+.+    ..++.+.+||||
T Consensus        75 ~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G  153 (251)
T PRK14244         75 YSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGG  153 (251)
T ss_pred             HhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHH
Confidence            43   122456789999999988876 999999887544443  23344566789999999965    467889999999


Q ss_pred             HHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHH
Q psy7365         191 MQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVL  270 (601)
Q Consensus       191 ~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~  270 (601)
                      ||||+++||+|                                      +.+                            
T Consensus       154 q~qrv~laral--------------------------------------~~~----------------------------  167 (251)
T PRK14244        154 QQQRLCIARAI--------------------------------------AVK----------------------------  167 (251)
T ss_pred             HHHHHHHHHHH--------------------------------------hcC----------------------------
Confidence            99999754432                                      222                            


Q ss_pred             HhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         271 FAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       271 ~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                             |+++||||||+|||+.++..+++.|.++.      +|+|||++||+++++..+||++++|.+|+++..+..
T Consensus       168 -------p~llllDEPt~~LD~~~~~~l~~~l~~~~------~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~  232 (251)
T PRK14244        168 -------PTMLLMDEPCSALDPVATNVIENLIQELK------KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTT  232 (251)
T ss_pred             -------CCEEEEeCCCccCCHHHHHHHHHHHHHHh------cCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCH
Confidence                   58999999999999999999999999872      379999999999999999999999999999876643

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=4.8e-35  Score=327.26  Aligned_cols=216  Identities=24%  Similarity=0.337  Sum_probs=173.9

Q ss_pred             chhhhhcccccccccC-CCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEc-ccc
Q psy7365          47 AYVSLFESLSENRDKL-GIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIY-DHD  118 (601)
Q Consensus        47 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~-g~~  118 (601)
                      ..+..+++|++.|++. ++...+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++ |.+
T Consensus       277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGs--GKSTL------l~~l~Gl~~p~~G~i~~~~g~~  348 (520)
T TIGR03269       277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGA--GKTTL------SKIIAGVLEPTSGEVNVRVGDE  348 (520)
T ss_pred             CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCeEEEEecCCc
Confidence            3456799999998542 1235699999999988      999999  56665      579999999999999996 643


Q ss_pred             ---CCCc----hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCc-----ccCCcccc
Q psy7365         119 ---IRTD----MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPH-----KRTSLANT  186 (601)
Q Consensus       119 ---~~~~----~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----~~~~~~~~  186 (601)
                         +...    ....++.+||+||++.+|+.+||.||+.+.... +.+....+.++.++++.+||.+     ..++++.+
T Consensus       349 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~  427 (520)
T TIGR03269       349 WVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDE  427 (520)
T ss_pred             cccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhh
Confidence               2211    123456799999999999999999999876432 3444445567889999999975     57899999


Q ss_pred             CChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHH
Q psy7365         187 LSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVA  266 (601)
Q Consensus       187 LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a  266 (601)
                      |||||||||++||||                                      +.+                        
T Consensus       428 LSgGq~qrv~laral--------------------------------------~~~------------------------  445 (520)
T TIGR03269       428 LSEGERHRVALAQVL--------------------------------------IKE------------------------  445 (520)
T ss_pred             CCHHHHHHHHHHHHH--------------------------------------hcC------------------------
Confidence            999999999854432                                      232                        


Q ss_pred             HHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccccc
Q psy7365         267 VTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  346 (601)
Q Consensus       267 ~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G  346 (601)
                                 |++|||||||+|||+.+++.++++|+++.    +..|.|||++|||++++..+||++++|.+|+++..+
T Consensus       446 -----------p~lLllDEPt~~LD~~~~~~l~~~l~~l~----~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g  510 (520)
T TIGR03269       446 -----------PRIVILDEPTGTMDPITKVDVTHSILKAR----EEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIG  510 (520)
T ss_pred             -----------CCEEEEeCCcccCCHHHHHHHHHHHHHHH----HHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence                       58999999999999999999999999873    234899999999999999999999999999988766


Q ss_pred             Cc
Q psy7365         347 SS  348 (601)
Q Consensus       347 ~~  348 (601)
                      ++
T Consensus       511 ~~  512 (520)
T TIGR03269       511 DP  512 (520)
T ss_pred             CH
Confidence            43

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=100.00  E-value=5.1e-35  Score=292.96  Aligned_cols=197  Identities=21%  Similarity=0.308  Sum_probs=162.0

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-  121 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-  121 (601)
                      ++.+++|++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. 
T Consensus         7 ~i~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~g~~~~~~   74 (225)
T PRK10247          7 LLQLQNVGYLAGD----AKILNNISFSLRAGEFKLITGPSGC--GKSTL------LKIVASLISPTSGTLLFEGEDISTL   74 (225)
T ss_pred             eEEEeccEEeeCC----ceeeeccEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcccCCCCCeEEECCEEcCcC
Confidence            3558999999853    4599999999988      999999  56665      579999999999999999998754 


Q ss_pred             chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC-cccCCccccCChHHHhhhhchhh
Q psy7365         122 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP-HKRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       122 ~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                      +....++.++|+||++.+|+ .|+.||+.+.....+...  ...++.++++.+|+. ...++++.+|||||+||+++||+
T Consensus        75 ~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara  151 (225)
T PRK10247         75 KPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQQP--DPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRN  151 (225)
T ss_pred             CHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCCCh--HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHH
Confidence            33445678999999998886 599999988654443322  235677899999996 57899999999999999986543


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      |+                                      .+                                   |++
T Consensus       152 l~--------------------------------------~~-----------------------------------p~l  158 (225)
T PRK10247        152 LQ--------------------------------------FM-----------------------------------PKV  158 (225)
T ss_pred             Hh--------------------------------------cC-----------------------------------CCE
Confidence            32                                      22                                   589


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEec
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA  338 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~  338 (601)
                      +||||||+|||+.++..+.+.|.++.    +..|.|||++||+.+++. .||++++|+
T Consensus       159 lllDEPt~~LD~~~~~~l~~~l~~~~----~~~~~tvii~sh~~~~~~-~~d~i~~l~  211 (225)
T PRK10247        159 LLLDEITSALDESNKHNVNEIIHRYV----REQNIAVLWVTHDKDEIN-HADKVITLQ  211 (225)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEECChHHHH-hCCEEEEEe
Confidence            99999999999999999999999873    234889999999999986 699999995

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=5.3e-35  Score=327.56  Aligned_cols=217  Identities=19%  Similarity=0.255  Sum_probs=176.4

Q ss_pred             cchhhhhcccccccccCC-------CccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEE
Q psy7365          46 GAYVSLFESLSENRDKLG-------IDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTA  112 (601)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v  112 (601)
                      +..+..+++|++.|++.+       ++..+++|+||++.+      +|||||  |||||      .++|+|++| ++|+|
T Consensus       272 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGs--GKSTL------lk~l~Gl~~-~~G~i  342 (529)
T PRK15134        272 ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGS--GKSTT------GLALLRLIN-SQGEI  342 (529)
T ss_pred             CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCC--CHHHH------HHHHhCcCC-CCcEE
Confidence            344677999999985321       235699999999988      999999  57665      579999995 89999


Q ss_pred             EEccccCCC-ch---HHhcccEEEEccCC--CCCCCCCHHHHHHHhHhhcC--CChHHHHHHHHHHHHHcCCC-cccCCc
Q psy7365         113 KIYDHDIRT-DM---TTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQ--VPKDLAQLEISNMIGDLGIP-HKRTSL  183 (601)
Q Consensus       113 ~~~g~~~~~-~~---~~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~l~~~gl~-~~~~~~  183 (601)
                      +++|+++.. +.   ...++.+||+||++  .+|+.+||.||+.++...++  .+..+.+.++.++++.+||. ...+++
T Consensus       343 ~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~  422 (529)
T PRK15134        343 WFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRY  422 (529)
T ss_pred             EECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcC
Confidence            999998753 11   12356799999997  48889999999998754332  44445567788999999997 568999


Q ss_pred             cccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchh
Q psy7365         184 ANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSI  263 (601)
Q Consensus       184 ~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  263 (601)
                      +.+|||||||||++||++                                      +.+                     
T Consensus       423 ~~~LSgG~~qrv~la~al--------------------------------------~~~---------------------  443 (529)
T PRK15134        423 PAEFSGGQRQRIAIARAL--------------------------------------ILK---------------------  443 (529)
T ss_pred             CccCCHHHHHHHHHHHHH--------------------------------------hCC---------------------
Confidence            999999999999854432                                      232                     


Q ss_pred             HHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccc
Q psy7365         264 LVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQ  343 (601)
Q Consensus       264 ~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv  343 (601)
                                    |++|||||||+|||+.+++.++++|+++.    +..|+|||++|||++++..+||++++|.+|+++
T Consensus       444 --------------p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~  505 (529)
T PRK15134        444 --------------PSLIILDEPTSSLDKTVQAQILALLKSLQ----QKHQLAYLFISHDLHVVRALCHQVIVLRQGEVV  505 (529)
T ss_pred             --------------CCEEEeeCCccccCHHHHHHHHHHHHHHH----HhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence                          58999999999999999999999999873    224899999999999999999999999999998


Q ss_pred             cccCc
Q psy7365         344 CCGSS  348 (601)
Q Consensus       344 ~~G~~  348 (601)
                      ..+..
T Consensus       506 ~~~~~  510 (529)
T PRK15134        506 EQGDC  510 (529)
T ss_pred             EEcCH
Confidence            76643

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=4e-35  Score=288.48  Aligned_cols=195  Identities=25%  Similarity=0.345  Sum_probs=170.7

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCc------ccccccccCCCCcccCCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSA------PQKSYIGYCPQFDALNDRLT  388 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~------~~~~~ig~v~Q~~~l~~~lT  388 (601)
                      +++++-..-+...++|+...   +|+++++       +++.|+.++.|.++...      ..++++|++||+.+||..+|
T Consensus        25 d~v~l~V~~Gei~~iiGgSG---sGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFsslt  101 (263)
T COG1127          25 DGVDLDVPRGEILAILGGSG---SGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLT  101 (263)
T ss_pred             cCceeeecCCcEEEEECCCC---cCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccc
Confidence            88888888999999997522   4555443       45566666777665432      24688999999999999999


Q ss_pred             HHHHHHHhHHhc-CCChhHHHHHHHHHHHHcCCCcc-cccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHH
Q psy7365         389 PREHLEFYSRVR-NLPSVLLNTIVNESLNKFALGHY-SDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR  466 (601)
Q Consensus       389 v~E~L~~~~~~~-g~~~~~~~~~~~~lLe~~~L~~~-~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~  466 (601)
                      |+||+.|..+-+ .++++..++.+..-|+.+||... .++.|.+|||||++|++||||++.+|+++++||||+||||.+.
T Consensus       102 V~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a  181 (263)
T COG1127         102 VFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISA  181 (263)
T ss_pred             hhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchH
Confidence            999999976543 57778888889999999999876 8999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         467 RFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       467 ~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ..+-++|+++++. |.|++++|||++++..+|||++++.+|+|++.|+++++.+
T Consensus       182 ~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~  235 (263)
T COG1127         182 GVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA  235 (263)
T ss_pred             HHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence            9999999999887 9999999999999999999999999999999999999975

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.1e-35  Score=296.67  Aligned_cols=208  Identities=23%  Similarity=0.300  Sum_probs=170.5

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCC--C---CeeEEEEccc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLP--V---SSGTAKIYDH  117 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~--~---~~G~v~~~g~  117 (601)
                      ++.++++++.|+.    .++++|+||++.+      +||||+  |||||      .++|+|+++  |   ++|+|.++|.
T Consensus         6 ~i~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~~~~~~~~~G~i~~~g~   73 (253)
T PRK14261          6 ILSTKNLNLWYGE----KHALYDITISIPKNRVTALIGPSGC--GKSTL------LRCFNRMNDLIPGCRITGDILYNGE   73 (253)
T ss_pred             eEEEeeeEEEECC----eeeeeeeEEEECCCcEEEEECCCCC--CHHHH------HHHHhccccCCCCCCcceEEEECCE
Confidence            4568999999863    4599999999988      999999  56665      579999976  3   5899999999


Q ss_pred             cCCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCC-ChHHHHHHHHHHHHHcCCC----cccCCccccCCh
Q psy7365         118 DIRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIGDLGIP----HKRTSLANTLSG  189 (601)
Q Consensus       118 ~~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSg  189 (601)
                      ++..   +....++.+||+||++.+|+. ||+||+.|.....+. +....+.++.++++.+++.    ...++.+.+|||
T Consensus        74 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~  152 (253)
T PRK14261         74 NIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSG  152 (253)
T ss_pred             EccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCH
Confidence            8854   234556789999999998875 999999987665553 2334456778899999874    346889999999


Q ss_pred             HHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHH
Q psy7365         190 GMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTV  269 (601)
Q Consensus       190 G~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~  269 (601)
                      |||||+++||+|+                                      .+                           
T Consensus       153 G~~qrv~laral~--------------------------------------~~---------------------------  167 (253)
T PRK14261        153 GQQQRLCIARTLA--------------------------------------VN---------------------------  167 (253)
T ss_pred             HHHHHHHHHHHHh--------------------------------------cC---------------------------
Confidence            9999997654322                                      22                           


Q ss_pred             HHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         270 LFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       270 ~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                              |+++||||||+|||+.++..+++.|+++.      +++|||++||+++++...||++++|.+|+++..++.
T Consensus       168 --------p~lllLDEP~~gLD~~~~~~l~~~l~~~~------~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~  232 (253)
T PRK14261        168 --------PEVILMDEPCSALDPIATAKIEDLIEDLK------KEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKT  232 (253)
T ss_pred             --------CCEEEEeCCcccCCHHHHHHHHHHHHHHh------hCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCH
Confidence                    58999999999999999999999999872      258999999999999999999999999999876654

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=7.8e-35  Score=289.44  Aligned_cols=197  Identities=21%  Similarity=0.277  Sum_probs=165.7

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT  121 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~  121 (601)
                      ++..++++++.|++    ..+++++||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++..
T Consensus        10 ~~l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~i~G~~~~~~G~i~~~g~~i~~   77 (214)
T PRK13543         10 PLLAAHALAFSRNE----EPVFGPLDFHVDAGEALLVQGDNGA--GKTTL------LRVLAGLLHVESGQIQIDGKTATR   77 (214)
T ss_pred             ceEEEeeEEEecCC----ceeeecceEEECCCCEEEEEcCCCC--CHHHH------HHHHhCCCCCCCeeEEECCEEccc
Confidence            34568999999864    3499999999988      999999  56665      579999999999999999998753


Q ss_pred             chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhh
Q psy7365         122 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVW  201 (601)
Q Consensus       122 ~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~  201 (601)
                      .  ..++.++|+||++.+++.+|+.||+.++....+..   ..+++.++++.+|+.+..++++.+||||||||+++||++
T Consensus        78 ~--~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral  152 (214)
T PRK13543         78 G--DRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRR---AKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLW  152 (214)
T ss_pred             h--hhhhceEEeecCcccccCCcHHHHHHHHHHhcCCc---HHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHH
Confidence            2  23457999999999999999999998876544432   334577899999999889999999999999999865433


Q ss_pred             cchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEE
Q psy7365         202 FNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTV  281 (601)
Q Consensus       202 ~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~l  281 (601)
                      +                                      .+                                   |+++
T Consensus       153 ~--------------------------------------~~-----------------------------------p~ll  159 (214)
T PRK13543        153 L--------------------------------------SP-----------------------------------APLW  159 (214)
T ss_pred             h--------------------------------------cC-----------------------------------CCEE
Confidence            2                                      22                                   5899


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecC
Q psy7365         282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA  339 (601)
Q Consensus       282 iLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~  339 (601)
                      ||||||++||+.+++.+++.|.++.     .+|.|+|++||+++++..+||++++++.
T Consensus       160 llDEPt~~LD~~~~~~l~~~l~~~~-----~~~~tiii~sH~~~~~~~~~~~i~~l~~  212 (214)
T PRK13543        160 LLDEPYANLDLEGITLVNRMISAHL-----RGGGAALVTTHGAYAAPPVRTRMLTLEA  212 (214)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHH-----hCCCEEEEEecChhhhhhhcceEEEEee
Confidence            9999999999999999999998873     3588999999999999999999999874

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=100.00  E-value=9.3e-35  Score=298.74  Aligned_cols=215  Identities=20%  Similarity=0.231  Sum_probs=174.6

Q ss_pred             hhhhcccccccccCC-----CccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccc
Q psy7365          49 VSLFESLSENRDKLG-----IDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDH  117 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~  117 (601)
                      ++.+++|++.|+..+     ...++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.
T Consensus         3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~p~sG~i~~~g~   74 (268)
T PRK10419          3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGC--GKSTL------ARLLVGLESPSQGNVSWRGE   74 (268)
T ss_pred             eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCcEEEECCE
Confidence            355899999986310     135799999999988      999999  56665      57999999999999999999


Q ss_pred             cCCCc-h---HHhcccEEEEccCC--CCCCCCCHHHHHHHhHhh-cCCChHHHHHHHHHHHHHcCCC-cccCCccccCCh
Q psy7365         118 DIRTD-M---TTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQL-KQVPKDLAQLEISNMIGDLGIP-HKRTSLANTLSG  189 (601)
Q Consensus       118 ~~~~~-~---~~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSg  189 (601)
                      ++... .   ...++.+||+||++  .+++..|+.+|+.+.... .+....+...++.++++.+|+. ...++.+.+|||
T Consensus        75 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~  154 (268)
T PRK10419         75 PLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSG  154 (268)
T ss_pred             eccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCCh
Confidence            87531 1   23567899999998  366789999999775432 2444455556789999999997 578999999999


Q ss_pred             HHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHH
Q psy7365         190 GMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTV  269 (601)
Q Consensus       190 G~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~  269 (601)
                      |||||+++||||                                      +++                           
T Consensus       155 Ge~qrl~laral--------------------------------------~~~---------------------------  169 (268)
T PRK10419        155 GQLQRVCLARAL--------------------------------------AVE---------------------------  169 (268)
T ss_pred             HHHHHHHHHHHH--------------------------------------hcC---------------------------
Confidence            999999754432                                      233                           


Q ss_pred             HHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         270 LFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       270 ~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                              |++|||||||+|||+.++..+.+.|+++.    +..|.|+|++||+++++..+||++++|.+|+++..++.
T Consensus       170 --------p~lllLDEPt~~LD~~~~~~~~~~l~~~~----~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~  236 (268)
T PRK10419        170 --------PKLLILDEAVSNLDLVLQAGVIRLLKKLQ----QQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPV  236 (268)
T ss_pred             --------CCEEEEeCCCcccCHHHHHHHHHHHHHHH----HHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCCh
Confidence                    58999999999999999999999999873    22489999999999999999999999999999877654

>KOG0927|consensus

Probab=100.00  E-value=5.3e-35  Score=313.08  Aligned_cols=367  Identities=22%  Similarity=0.261  Sum_probs=244.4

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEc--cccCCCch
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIY--DHDIRTDM  123 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~--g~~~~~~~  123 (601)
                      +++++++|-    +.+.++|++||+.+      +|||||  ||||     + .++|.|-.+|..-++-+.  .+.+....
T Consensus        78 ~~sls~s~~----g~~l~kd~~~El~~g~rygLiG~nG~--Gkst-----~-L~~i~~~e~P~p~~~d~y~ls~e~~ps~  145 (614)
T KOG0927|consen   78 IESLSLSFH----GVELIKDVTLELNRGRRYGLIGPNGS--GKST-----F-LRAIAGREVPIPEHIDFYLLSREIEPSE  145 (614)
T ss_pred             eeeeeeccC----CceeeeeeeEEecCCceEEEEcCCCC--cHhH-----H-HHHHhcCCCCCCcccchhhhcccCCCch
Confidence            788999874    35699999999977      999999  5655     4 468999888865444332  22222111


Q ss_pred             H-Hhc----------ccEEEEccCCCCC-CC--CCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC-cccCCccccCC
Q psy7365         124 T-TIR----------RSLGVCPQYNALF-DK--LTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP-HKRTSLANTLS  188 (601)
Q Consensus       124 ~-~~~----------~~ig~v~Q~~~~~-~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS  188 (601)
                      . .+.          .++.+.-.+-..+ +.  .--.+++  +.+.-.++.+....++.++|..+|.. +..++++..||
T Consensus       146 ~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~--~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~S  223 (614)
T KOG0927|consen  146 KQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDEL--YERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLS  223 (614)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHH--HHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccC
Confidence            1 111          1111111111111 11  0111111  11222244566677788888888854 67899999999


Q ss_pred             hHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHH
Q psy7365         189 GGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVT  268 (601)
Q Consensus       189 gG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~  268 (601)
                      ||++.|+++||+||.                                                                 
T Consensus       224 gGwrmR~aLAr~Lf~-----------------------------------------------------------------  238 (614)
T KOG0927|consen  224 GGWRMRAALARALFQ-----------------------------------------------------------------  238 (614)
T ss_pred             chHHHHHHHHHHHhc-----------------------------------------------------------------
Confidence            999999886654432                                                                 


Q ss_pred             HHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         269 VLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       269 ~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                              .|++|+|||||++||+.+..++-+.|.+.       ...++|+++|+-+++...|..|+-+..++.+..+++
T Consensus       239 --------kP~LLLLDEPtnhLDleA~~wLee~L~k~-------d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gn  303 (614)
T KOG0927|consen  239 --------KPDLLLLDEPTNHLDLEAIVWLEEYLAKY-------DRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGN  303 (614)
T ss_pred             --------CCCEEEecCCccCCCHHHHHHHHHHHHhc-------cCceEEEEecchhhhhhHhhhhheecccceeeecCC
Confidence                    26999999999999999999999999875       122899999999999999999999998885433321


Q ss_pred             cc-------------c-------------c----------------------------------------------cccc
Q psy7365         349 VF-------------L-------------K----------------------------------------------NSFA  356 (601)
Q Consensus       349 ~l-------------L-------------k----------------------------------------------~~~g  356 (601)
                      ..             .             +                                              ...+
T Consensus       304 ydqy~~tr~E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~l~~~f~~vg  383 (614)
T KOG0927|consen  304 YDQYVKTRSELEENQMKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKVVGEKVLSFRFPEVG  383 (614)
T ss_pred             HHHHhhHHHHHhHHHHHHHHHHHhHHHHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhccccccccCCceEEEEccccc
Confidence            00             0             0                                              0000


Q ss_pred             -------------cccc----------cccccCCcc--------------------cccccccC-----------CCCcc
Q psy7365         357 -------------RGYY----------LSLDMKSAP--------------------QKSYIGYC-----------PQFDA  382 (601)
Q Consensus       357 -------------~g~~----------igld~~~~~--------------------~~~~ig~v-----------~Q~~~  382 (601)
                                   .+|.          +|.|..+..                    ....+|.|           -|+..
T Consensus       384 ~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~  463 (614)
T KOG0927|consen  384 KIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLA  463 (614)
T ss_pred             CCCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhH
Confidence                         0000          111110000                    00112222           22211


Q ss_pred             --cCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCC-cccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCC
Q psy7365         383 --LNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTS  459 (601)
Q Consensus       383 --l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~-~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTs  459 (601)
                        +.-+.++.|++   ...+  +.....+.+..+|.++||. +..+.++++||+|||+||.+|+.++..|.+|+|||||+
T Consensus       464 e~ldl~~s~le~~---~~~~--~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtn  538 (614)
T KOG0927|consen  464 EQLDLDKSSLEFM---MPKF--PDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTN  538 (614)
T ss_pred             hhcCcchhHHHHH---HHhc--cccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCc
Confidence              11222333332   2222  2123346788999999998 67788999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEE-EEecCHHHHHHH
Q psy7365         460 GMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF-TCLGSATHLKSK  520 (601)
Q Consensus       460 GLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~i-v~~G~~~~L~~~  520 (601)
                      |||..+...+.+.|.++   ..+|+++|||+..+..++++|.+..+|.+ ...|+...-+..
T Consensus       539 hLDi~tid~laeaiNe~---~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk~~  597 (614)
T KOG0927|consen  539 HLDIETIDALAEAINEF---PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYKEH  597 (614)
T ss_pred             CCCchhHHHHHHHHhcc---CCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHHHH
Confidence            99999999999999886   45899999999999999999999998876 567777655443

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=100.00  E-value=8.1e-35  Score=295.83  Aligned_cols=208  Identities=20%  Similarity=0.298  Sum_probs=168.3

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-chH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DMT  124 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~~  124 (601)
                      +++|++.        .+++|+||++.+      +||||+  |||||      .++|+|++++ +|+|.++|.++.. ...
T Consensus         3 ~~~l~~~--------~~l~~vsl~i~~Gei~~l~G~nGs--GKSTL------l~~l~Gl~~~-~G~i~~~g~~i~~~~~~   65 (248)
T PRK03695          3 LNDVAVS--------TRLGPLSAEVRAGEILHLVGPNGA--GKSTL------LARMAGLLPG-SGSIQFAGQPLEAWSAA   65 (248)
T ss_pred             ccccchh--------ceecceEEEEcCCCEEEEECCCCC--CHHHH------HHHHcCCCCC-CeEEEECCEecCcCCHH
Confidence            6778874        289999999988      999999  56655      5799999965 9999999998854 333


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcch
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNN  204 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~  204 (601)
                      ..++.+||+||++.+++.+|+.||+.++... +.+..+..+++.++++.+|+.+..++++.+||||||||+++|++++.+
T Consensus        66 ~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~  144 (248)
T PRK03695         66 ELARHRAYLSQQQTPPFAMPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQV  144 (248)
T ss_pred             HHhhheEEecccCccCCCccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence            4556799999999888899999999886432 233444566788999999999889999999999999999865433220


Q ss_pred             hhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEe
Q psy7365         205 KAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILD  284 (601)
Q Consensus       205 ~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLD  284 (601)
                      +     +                            ..+|                                 +|+++|||
T Consensus       145 ~-----~----------------------------~~~p---------------------------------~p~llllD  158 (248)
T PRK03695        145 W-----P----------------------------DINP---------------------------------AGQLLLLD  158 (248)
T ss_pred             c-----c----------------------------ccCC---------------------------------CCCEEEEc
Confidence            0     0                            0011                                 25899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         285 EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       285 EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      |||+|||+.++..+.++|+++.     .+|+|||++||+++++..+||++++|.+|+++..++.
T Consensus       159 EPt~~LD~~~~~~l~~~L~~~~-----~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~  217 (248)
T PRK03695        159 EPMNSLDVAQQAALDRLLSELC-----QQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRR  217 (248)
T ss_pred             CCcccCCHHHHHHHHHHHHHHH-----hCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence            9999999999999999999873     3589999999999999999999999999999877653

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=100.00  E-value=1e-34  Score=295.95  Aligned_cols=206  Identities=20%  Similarity=0.263  Sum_probs=168.0

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCC----CeeEEEEccccC
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPV----SSGTAKIYDHDI  119 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~----~~G~v~~~g~~~  119 (601)
                      ..+++|++.|+     ..+++|+||++.+      +|||||  |||||      .++|+|+++|    ++|+|.++|.++
T Consensus         5 l~~~~l~~~~~-----~~il~~vsl~i~~Ge~~~l~G~nGs--GKSTL------l~~l~Gl~~~~~~~~~G~i~~~g~~i   71 (254)
T PRK10418          5 IELRNIALQAA-----QPLVHGVSLTLQRGRVLALVGGSGS--GKSLT------CAAALGILPAGVRQTAGRVLLDGKPV   71 (254)
T ss_pred             EEEeCeEEEec-----cceecceEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCCCcCCEEEECCeec
Confidence            34899999972     3589999999988      999999  56665      6799999999    999999999988


Q ss_pred             CCchHHhcccEEEEccCCC--CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCc---ccCCccccCChHHHhh
Q psy7365         120 RTDMTTIRRSLGVCPQYNA--LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPH---KRTSLANTLSGGMQRK  194 (601)
Q Consensus       120 ~~~~~~~~~~ig~v~Q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---~~~~~~~~LSgG~~qr  194 (601)
                      .. ....++.+||+||++.  +++..|+.+++.+.+...+.+..  ..++.++++.+|+.+   ..++.+.+||||||||
T Consensus        72 ~~-~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qr  148 (254)
T PRK10418         72 AP-CALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPAD--DATLTAALEAVGLENAARVLKLYPFEMSGGMLQR  148 (254)
T ss_pred             cc-cccccceEEEEecCCccccCccccHHHHHHHHHHHcCCChH--HHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHH
Confidence            52 2223467999999985  34567999998776555554432  367889999999987   4689999999999999


Q ss_pred             hhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhc
Q psy7365         195 LDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMS  274 (601)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  274 (601)
                      +++|||+                                      +.+                                
T Consensus       149 v~laral--------------------------------------~~~--------------------------------  158 (254)
T PRK10418        149 MMIALAL--------------------------------------LCE--------------------------------  158 (254)
T ss_pred             HHHHHHH--------------------------------------hcC--------------------------------
Confidence            9864432                                      233                                


Q ss_pred             cCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         275 FVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       275 ~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                         |++|||||||+|||+.+++.+++.|+++.    +..|.|||++||+++++..+|||+++|.+|++...++.
T Consensus       159 ---p~lLlLDEPt~~LD~~~~~~l~~~L~~~~----~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~  225 (254)
T PRK10418        159 ---APFIIADEPTTDLDVVAQARILDLLESIV----QKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDV  225 (254)
T ss_pred             ---CCEEEEeCCCcccCHHHHHHHHHHHHHHH----HhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCH
Confidence               58999999999999999999999999873    22489999999999999999999999999998766543

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.4e-35  Score=325.53  Aligned_cols=208  Identities=21%  Similarity=0.301  Sum_probs=170.0

Q ss_pred             chhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCC
Q psy7365          47 AYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIR  120 (601)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~  120 (601)
                      ..+..+++|++.|+      .+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|+++.
T Consensus       263 ~~~l~~~~l~~~~~------~~l~~isl~i~~Ge~~~l~G~NGs--GKSTL------lk~i~Gl~~p~~G~I~~~g~~~~  328 (510)
T PRK09700        263 ETVFEVRNVTSRDR------KKVRDISFSVCRGEILGFAGLVGS--GRTEL------MNCLFGVDKRAGGEIRLNGKDIS  328 (510)
T ss_pred             CcEEEEeCccccCC------CcccceeEEEcCCcEEEEECCCCC--CHHHH------HHHHhCCCcCCCCeEEECCEECC
Confidence            34567999998642      279999999988      999999  56665      67999999999999999999875


Q ss_pred             Cc--hHHhcccEEEEccCC---CCCCCCCHHHHHHHhHhhc--------CC-ChHHHHHHHHHHHHHcCCC-cccCCccc
Q psy7365         121 TD--MTTIRRSLGVCPQYN---ALFDKLTVEEHMWFYSQLK--------QV-PKDLAQLEISNMIGDLGIP-HKRTSLAN  185 (601)
Q Consensus       121 ~~--~~~~~~~ig~v~Q~~---~~~~~~tv~e~l~~~~~~~--------~~-~~~~~~~~~~~~l~~~gl~-~~~~~~~~  185 (601)
                      ..  ....++.+||+||++   .+|+++||.||+.++...+        +. +....+.++.++++.+|+. +..+++++
T Consensus       329 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  408 (510)
T PRK09700        329 PRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNIT  408 (510)
T ss_pred             CCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccc
Confidence            32  234566899999984   5889999999998754321        21 2233345678999999997 78899999


Q ss_pred             cCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHH
Q psy7365         186 TLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILV  265 (601)
Q Consensus       186 ~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  265 (601)
                      +|||||||||++||+|                                      +.+                       
T Consensus       409 ~LSgGq~qrv~lAral--------------------------------------~~~-----------------------  427 (510)
T PRK09700        409 ELSGGNQQKVLISKWL--------------------------------------CCC-----------------------  427 (510)
T ss_pred             cCChHHHHHHHHHHHH--------------------------------------hcC-----------------------
Confidence            9999999999865432                                      222                       


Q ss_pred             HHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc
Q psy7365         266 AVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  345 (601)
Q Consensus       266 a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~  345 (601)
                                  |++|||||||+|||+.+++.++++|+++.     .+|.|||++|||++++..+|||+++|.+|++...
T Consensus       428 ------------p~lLlLDEPt~~LD~~~~~~l~~~l~~l~-----~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~  490 (510)
T PRK09700        428 ------------PEVIIFDEPTRGIDVGAKAEIYKVMRQLA-----DDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI  490 (510)
T ss_pred             ------------CCEEEECCCCCCcCHHHHHHHHHHHHHHH-----HCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence                        58999999999999999999999999873     3589999999999999999999999999998765


Q ss_pred             c
Q psy7365         346 G  346 (601)
Q Consensus       346 G  346 (601)
                      +
T Consensus       491 ~  491 (510)
T PRK09700        491 L  491 (510)
T ss_pred             e
Confidence            4

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-34  Score=298.33  Aligned_cols=208  Identities=25%  Similarity=0.337  Sum_probs=171.3

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCC-----CCeeEEEEccc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLP-----VSSGTAKIYDH  117 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~-----~~~G~v~~~g~  117 (601)
                      ...++++++.|+.    .++++|+||++.+      +||||+  |||||      .++|+|+++     |++|+|.++|.
T Consensus        25 ~l~~~nl~~~~~~----~~il~~vs~~i~~Ge~~~I~G~nGs--GKSTL------l~~laGl~~~~~~~~~~G~i~i~g~   92 (272)
T PRK14236         25 ALEVRNLNLFYGD----KQALFDISMRIPKNRVTAFIGPSGC--GKSTL------LRCFNRMNDLVDNCRIEGEIRLDGQ   92 (272)
T ss_pred             EEEEEEEEEEECC----eeEeeeEEEEEcCCCEEEEECCCCC--CHHHH------HHHHHhcCCCccCCCCceEEEECCE
Confidence            4558999999863    3599999999988      999999  56665      679999988     48999999999


Q ss_pred             cCCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCC-hHHHHHHHHHHHHHcCCCc----ccCCccccCCh
Q psy7365         118 DIRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIGDLGIPH----KRTSLANTLSG  189 (601)
Q Consensus       118 ~~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~----~~~~~~~~LSg  189 (601)
                      ++..   .....++.++|+||++.+|+. |+.||+.+.....+.. ++..++++.++++.+++.+    ..++.+.+|||
T Consensus        93 ~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~  171 (272)
T PRK14236         93 NIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSG  171 (272)
T ss_pred             ECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCH
Confidence            8753   233457789999999998886 9999998876555542 3334566888999999863    56889999999


Q ss_pred             HHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHH
Q psy7365         190 GMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTV  269 (601)
Q Consensus       190 G~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~  269 (601)
                      |||||+++||+|                                      +.+                           
T Consensus       172 Gq~qrv~laral--------------------------------------~~~---------------------------  186 (272)
T PRK14236        172 GQQQRLVIARAI--------------------------------------AIE---------------------------  186 (272)
T ss_pred             HHHHHHHHHHHH--------------------------------------HCC---------------------------
Confidence            999999864432                                      232                           


Q ss_pred             HHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         270 LFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       270 ~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                              |+++||||||+|||+.++..++++|+++.      ++.|+|++||+++++...||++++|.+|+++..++.
T Consensus       187 --------p~lllLDEPt~gLD~~~~~~l~~~L~~~~------~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~  251 (272)
T PRK14236        187 --------PEVLLLDEPTSALDPISTLKIEELITELK------SKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDT  251 (272)
T ss_pred             --------CCEEEEeCCcccCCHHHHHHHHHHHHHHH------hCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCH
Confidence                    58999999999999999999999999872      268999999999999999999999999999876643

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=5.2e-35  Score=325.46  Aligned_cols=213  Identities=23%  Similarity=0.264  Sum_probs=172.5

Q ss_pred             chhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCC-CeeEEEEccccC
Q psy7365          47 AYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPV-SSGTAKIYDHDI  119 (601)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~-~~G~v~~~g~~~  119 (601)
                      ..+..++++++.|+.. ++..+++|+||++.+      +|||||  |||||      .++|+|+++| ++|+|.++|+++
T Consensus       255 ~~~l~~~~l~~~~~~~-~~~~~l~~is~~i~~Ge~~~l~G~NGs--GKSTL------l~~l~G~~~p~~~G~i~~~g~~~  325 (500)
T TIGR02633       255 DVILEARNLTCWDVIN-PHRKRVDDVSFSLRRGEILGVAGLVGA--GRTEL------VQALFGAYPGKFEGNVFINGKPV  325 (500)
T ss_pred             CceEEEeCCccccccc-ccccccccceeEEeCCcEEEEeCCCCC--CHHHH------HHHHhCCCCCCCCeEEEECCEEC
Confidence            3456699999987321 124589999999988      999999  57665      6799999985 899999999987


Q ss_pred             CC--chHHhcccEEEEccCC---CCCCCCCHHHHHHHhHh--hc---CCChHHHHHHHHHHHHHcCCCc-ccCCccccCC
Q psy7365         120 RT--DMTTIRRSLGVCPQYN---ALFDKLTVEEHMWFYSQ--LK---QVPKDLAQLEISNMIGDLGIPH-KRTSLANTLS  188 (601)
Q Consensus       120 ~~--~~~~~~~~ig~v~Q~~---~~~~~~tv~e~l~~~~~--~~---~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS  188 (601)
                      ..  ....+++++||+||++   .+|+++||.||+.+...  ..   +.+....+.++.++++.+|+.. ..++++++||
T Consensus       326 ~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS  405 (500)
T TIGR02633       326 DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLS  405 (500)
T ss_pred             CCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCC
Confidence            53  2234567899999996   48999999999987532  11   2233444567889999999974 6899999999


Q ss_pred             hHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHH
Q psy7365         189 GGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVT  268 (601)
Q Consensus       189 gG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~  268 (601)
                      ||||||+++||++                                      +.+                          
T Consensus       406 gGqkqrv~la~al--------------------------------------~~~--------------------------  421 (500)
T TIGR02633       406 GGNQQKAVLAKML--------------------------------------LTN--------------------------  421 (500)
T ss_pred             HHHHHHHHHHHHH--------------------------------------hhC--------------------------
Confidence            9999999864432                                      222                          


Q ss_pred             HHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccccc
Q psy7365         269 VLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  346 (601)
Q Consensus       269 ~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G  346 (601)
                               |++|||||||+|||+.+++.++++|.++.     .+|.|||++|||++++..+||++++|.+|+++...
T Consensus       422 ---------p~lllLDEPt~~LD~~~~~~l~~~l~~l~-----~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~  485 (500)
T TIGR02633       422 ---------PRVLILDEPTRGVDVGAKYEIYKLINQLA-----QEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDF  485 (500)
T ss_pred             ---------CCEEEEcCCCCCcCHhHHHHHHHHHHHHH-----hCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEE
Confidence                     58999999999999999999999999873     35899999999999999999999999999987644

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=7.4e-34  Score=297.06  Aligned_cols=269  Identities=25%  Similarity=0.384  Sum_probs=196.2

Q ss_pred             CCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC--cccccccccCCCCccc
Q psy7365         313 SGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS--APQKSYIGYCPQFDAL  383 (601)
Q Consensus       313 ~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~--~~~~~~ig~v~Q~~~l  383 (601)
                      .+.+++   +++++...-++.+++++...   .|++++++       +..|+.++.+.+...  ...++.+||+||++.+
T Consensus        15 ~~~~~l---~~vsl~i~~Ge~~~l~G~NG---aGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~   88 (303)
T TIGR01288        15 GDKVVV---NDLSFTIARGECFGLLGPNG---AGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNL   88 (303)
T ss_pred             CCeEEE---cceeEEEcCCcEEEEECCCC---CCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccC
Confidence            344555   89999999999999997522   45554432       333444444443321  1235679999999999


Q ss_pred             CCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCH
Q psy7365         384 NDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP  463 (601)
Q Consensus       384 ~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~  463 (601)
                      ++.+|++||+.++...++.+..+..++++++++.++|.+..++++.+||||||||++||+||+++|++|||||||+|||+
T Consensus        89 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~  168 (303)
T TIGR01288        89 DPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDP  168 (303)
T ss_pred             CcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence            99999999999876666655555556788899999999989999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHhCCceEEEEEecCCCchhHHHHH
Q psy7365         464 GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKVRCAEGRSADAQTYL  543 (601)
Q Consensus       464 ~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~~~~~~l~i~~~~~~~~~~~~~l  543 (601)
                      .+++.++++|++++++|+|||++||++++++.+|||+++|++|++++.|+++++.........+.+...  ..+......
T Consensus       169 ~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  246 (303)
T TIGR01288       169 HARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIGCNVIEIYGG--DPDELRELI  246 (303)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhhcCCCeEEEEEcC--CHHHHHHHh
Confidence            999999999999987899999999999999999999999999999999999999766543333333322  112122211


Q ss_pred             hhcCCCceeEEeeCcEEEEEEcCCcccHHHHHHHHHHccccCCCeeEEEecCCCCCCC
Q psy7365         544 SLNLPVADLVETHATQLQYRISGAVSDLGALFRTLESAKTEAGLIVDYSLSQTSLEDS  601 (601)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~i~~~~v~~~sLEdv  601 (601)
                      .   +.....+..+..+.+...    ....+...+.+.    . ..++...++||||+
T Consensus       247 ~---~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~----~-~~~~~~~~~sLedi  292 (303)
T TIGR01288       247 R---PYARRIEVSGETLFCYAR----DPEQVRVQLRGR----T-DLRLLQRPPNLEDV  292 (303)
T ss_pred             h---hccceeeeeCCEEEEEeC----CHHHHHHHHhcc----c-CceEEecCCCHHHH
Confidence            1   112222223344433222    234455555321    2 33678899999985

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-34  Score=298.75  Aligned_cols=210  Identities=20%  Similarity=0.305  Sum_probs=169.8

Q ss_pred             chhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCC-----CCeeEEEEc
Q psy7365          47 AYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLP-----VSSGTAKIY  115 (601)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~-----~~~G~v~~~  115 (601)
                      .++..+++|++.|+.    ..+++|+||++.+      +||||+  |||||      .++|+|+++     |++|+|.++
T Consensus        22 ~~~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~I~G~nGs--GKSTL------l~~i~Gl~~~~~~~~~~G~i~~~   89 (271)
T PRK14238         22 KVVFDTQNLNLWYGE----DHALKNINLDIHENEVTAIIGPSGC--GKSTY------IKTLNRMVELVPSVKTTGKILYR   89 (271)
T ss_pred             ceEEEEeeeEEEECC----cceeeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHHhhccCCCCCCCceeEEEC
Confidence            345669999999863    3489999999988      999999  56665      579999997     699999999


Q ss_pred             cccCCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCCh-HHHHHHHHHHHHHcC----CCcccCCccccC
Q psy7365         116 DHDIRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK-DLAQLEISNMIGDLG----IPHKRTSLANTL  187 (601)
Q Consensus       116 g~~~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~g----l~~~~~~~~~~L  187 (601)
                      |.++..   ....+++.+||+||++.+|+ .|+.||+.++....+.+. ...+..+.++++.++    +.+..++++.+|
T Consensus        90 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~L  168 (271)
T PRK14238         90 DQNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGL  168 (271)
T ss_pred             CEEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccC
Confidence            998742   23445678999999998887 599999998765444432 233455678888875    445678899999


Q ss_pred             ChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHH
Q psy7365         188 SGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAV  267 (601)
Q Consensus       188 SgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~  267 (601)
                      |||||||+++||++                                      +.                          
T Consensus       169 SgGe~qrv~laraL--------------------------------------~~--------------------------  184 (271)
T PRK14238        169 SGGQQQRLCIARCL--------------------------------------AI--------------------------  184 (271)
T ss_pred             CHHHHHHHHHHHHH--------------------------------------Hc--------------------------
Confidence            99999999754332                                      22                          


Q ss_pred             HHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         268 TVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       268 ~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                               +|+++||||||+|||+.++..+.+.|+++.      +++|+|++||+++++..+||++++|.+|+++..++
T Consensus       185 ---------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~------~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~  249 (271)
T PRK14238        185 ---------EPDVILMDEPTSALDPISTLKVEELVQELK------KDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDD  249 (271)
T ss_pred             ---------CCCEEEEeCCCCcCCHHHHHHHHHHHHHHH------cCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCC
Confidence                     258999999999999999999999999872      26899999999999999999999999999987665


Q ss_pred             c
Q psy7365         348 S  348 (601)
Q Consensus       348 ~  348 (601)
                      .
T Consensus       250 ~  250 (271)
T PRK14238        250 T  250 (271)
T ss_pred             H
Confidence            3

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-34  Score=294.43  Aligned_cols=212  Identities=22%  Similarity=0.316  Sum_probs=173.7

Q ss_pred             cchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEcc---
Q psy7365          46 GAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYD---  116 (601)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g---  116 (601)
                      ..|+..+++++++|++    .++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|   
T Consensus         7 ~~~~i~~~~~~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~iaG~~~~~~G~v~~~G~~~   74 (257)
T PRK14246          7 AEDVFNISRLYLYIND----KAILKDITIKIPNNSIFGIMGPSGS--GKSTL------LKVLNRLIEIYDSKIKVDGKVL   74 (257)
T ss_pred             hhhheeeeeEEEecCC----ceeEeceEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCcCceeEcCEEE
Confidence            4566779999999864    4599999999988      999999  56655      5799999999997777665   


Q ss_pred             ---ccCCC-chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCC-ChHHHHHHHHHHHHHcCCC----cccCCccccC
Q psy7365         117 ---HDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIGDLGIP----HKRTSLANTL  187 (601)
Q Consensus       117 ---~~~~~-~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~----~~~~~~~~~L  187 (601)
                         .++.. .....++.++|+||++.+|+.+|+.||+.++....+. ++++.+.++.++++.+|+.    +..++.+..|
T Consensus        75 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  154 (257)
T PRK14246         75 YFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQL  154 (257)
T ss_pred             ECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccC
Confidence               44432 2334577899999999999999999999987654443 3445567788999999996    3568899999


Q ss_pred             ChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHH
Q psy7365         188 SGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAV  267 (601)
Q Consensus       188 SgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~  267 (601)
                      |||||||+++||+|+                                      .+                         
T Consensus       155 S~G~~qrl~laral~--------------------------------------~~-------------------------  171 (257)
T PRK14246        155 SGGQQQRLTIARALA--------------------------------------LK-------------------------  171 (257)
T ss_pred             CHHHHHHHHHHHHHH--------------------------------------cC-------------------------
Confidence            999999998654432                                      22                         


Q ss_pred             HHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         268 TVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       268 ~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                                |+++||||||+|||+.++..+++.|.+++      ++.|||++||+++++..+||++++|.+|++...++
T Consensus       172 ----------P~llllDEPt~~LD~~~~~~l~~~l~~~~------~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~  235 (257)
T PRK14246        172 ----------PKVLLMDEPTSMIDIVNSQAIEKLITELK------NEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGS  235 (257)
T ss_pred             ----------CCEEEEcCCCccCCHHHHHHHHHHHHHHh------cCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence                      58999999999999999999999999872      35899999999999999999999999999987765


Q ss_pred             c
Q psy7365         348 S  348 (601)
Q Consensus       348 ~  348 (601)
                      .
T Consensus       236 ~  236 (257)
T PRK14246        236 S  236 (257)
T ss_pred             H
Confidence            4

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-34  Score=296.16  Aligned_cols=207  Identities=23%  Similarity=0.337  Sum_probs=169.5

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCC-----CeeEEEEcccc
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPV-----SSGTAKIYDHD  118 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~-----~~G~v~~~g~~  118 (601)
                      ..++++++.|+.    ..+++|+||++.+      +||||+  |||||      .++|+|+++|     ++|+|.++|.+
T Consensus         8 l~~~~l~~~~~~----~~il~~isl~i~~Ge~~~l~G~nGs--GKSTL------lk~l~Gl~~~~~~~~~~G~i~~~g~~   75 (259)
T PRK14260          8 IKVKDLSFYYNT----SKAIEGISMDIYRNKVTAIIGPSGC--GKSTF------IKTLNRISELEGPVKVEGVVDFFGQN   75 (259)
T ss_pred             EEEEEEEEEECC----eEeecceEEEEcCCCEEEEECCCCC--CHHHH------HHHHHhhcCcccCCccceEEEECCEe
Confidence            458999999863    3599999999988      999999  56665      6799999985     58999999998


Q ss_pred             CCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcC-CChHHHHHHHHHHHHHcCCC----cccCCccccCChH
Q psy7365         119 IRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ-VPKDLAQLEISNMIGDLGIP----HKRTSLANTLSGG  190 (601)
Q Consensus       119 ~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgG  190 (601)
                      +..   .....++.+||+||++.+|+ .|++||+.++....+ .+......++.++++.+|+.    +..++++.+||||
T Consensus        76 i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G  154 (259)
T PRK14260         76 IYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGG  154 (259)
T ss_pred             ccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHH
Confidence            743   22345678999999999887 899999988765443 23444556778899999984    4678899999999


Q ss_pred             HHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHH
Q psy7365         191 MQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVL  270 (601)
Q Consensus       191 ~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~  270 (601)
                      ||||+++||||                                      +.+                            
T Consensus       155 ~~qrv~laral--------------------------------------~~~----------------------------  168 (259)
T PRK14260        155 QQQRLCIARAL--------------------------------------AIK----------------------------  168 (259)
T ss_pred             HHHHHHHHHHH--------------------------------------hcC----------------------------
Confidence            99999754432                                      222                            


Q ss_pred             HhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEec-----CCccccc
Q psy7365         271 FAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA-----AGKLQCC  345 (601)
Q Consensus       271 ~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~-----~GkIv~~  345 (601)
                             |+++||||||+|||+.++..+++.|+++.      +++|||++||+++++..+||++++|.     +|+++..
T Consensus       169 -------p~lllLDEPt~~LD~~~~~~l~~~l~~~~------~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~  235 (259)
T PRK14260        169 -------PKVLLMDEPCSALDPIATMKVEELIHSLR------SELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF  235 (259)
T ss_pred             -------CCEEEEcCCCccCCHHHHHHHHHHHHHHh------cCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence                   58999999999999999999999999872      25899999999999999999999997     5998877


Q ss_pred             cCc
Q psy7365         346 GSS  348 (601)
Q Consensus       346 G~~  348 (601)
                      +.+
T Consensus       236 ~~~  238 (259)
T PRK14260        236 GVT  238 (259)
T ss_pred             CCH
Confidence            654

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=100.00  E-value=9.4e-35  Score=286.14  Aligned_cols=191  Identities=23%  Similarity=0.274  Sum_probs=161.3

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchH
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMT  124 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~  124 (601)
                      .+++|++.|+.    .++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++.....
T Consensus         2 ~i~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~g~~~~~~~~   69 (201)
T cd03231           2 EADELTCERDG----RALFSGLSFTLAAGEALQVTGPNGS--GKTTL------LRILAGLSPPLAGRVLLNGGPLDFQRD   69 (201)
T ss_pred             EEEEEEEEeCC----ceeeccceEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCcEEEECCEecccccH
Confidence            36899999854    3589999999988      999999  56655      579999999999999999998754334


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcch
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNN  204 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~  204 (601)
                      ..+++++|+||++.+++.+|+.||+.++....      ..+++.++++.+|+.+..++++.+||||||||+++||++   
T Consensus        70 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral---  140 (201)
T cd03231          70 SIARGLLYLGHAPGIKTTLSVLENLRFWHADH------SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLL---  140 (201)
T ss_pred             HhhhheEEeccccccCCCcCHHHHHHhhcccc------cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHH---
Confidence            56778999999999999999999998854211      235678899999999888999999999999999754432   


Q ss_pred             hhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEe
Q psy7365         205 KAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILD  284 (601)
Q Consensus       205 ~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLD  284 (601)
                                                         +.+                                   |+++|||
T Consensus       141 -----------------------------------~~~-----------------------------------p~llllD  150 (201)
T cd03231         141 -----------------------------------LSG-----------------------------------RPLWILD  150 (201)
T ss_pred             -----------------------------------hcC-----------------------------------CCEEEEe
Confidence                                               233                                   5899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEe
Q psy7365         285 EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII  337 (601)
Q Consensus       285 EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL  337 (601)
                      |||+|||+.+++.+++.|+++.     .+|.|+|++||+..+....|++++.+
T Consensus       151 EPt~~LD~~~~~~l~~~l~~~~-----~~g~tiii~sH~~~~~~~~~~~~~~~  198 (201)
T cd03231         151 EPTTALDKAGVARFAEAMAGHC-----ARGGMVVLTTHQDLGLSEAGARELDL  198 (201)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHH-----hCCCEEEEEecCchhhhhccceeEec
Confidence            9999999999999999998862     35889999999999999999999876

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=100.00  E-value=1.4e-34  Score=294.33  Aligned_cols=209  Identities=24%  Similarity=0.318  Sum_probs=167.5

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEcccc-----
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHD-----  118 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~-----  118 (601)
                      ..++++++.|+.    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.+     
T Consensus         4 l~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~g~~~~~~~   71 (253)
T TIGR02323         4 LQVSGLSKSYGG----GKGCRDVSFDLYPGEVLGIVGESGS--GKSTL------LGCLAGRLAPDHGTATYIMRSGAELE   71 (253)
T ss_pred             EEEeeeEEEeCC----ceEeecceEEEeCCcEEEEECCCCC--CHHHH------HHHHhCCCCCCCcEEEEecccccccc
Confidence            458999999864    3489999999988      999999  56665      579999999999999999987     


Q ss_pred             CCC-chH----HhcccEEEEccCCC--CCCCCCHHHHHHHhHhhcC-CChHHHHHHHHHHHHHcCCC-cccCCccccCCh
Q psy7365         119 IRT-DMT----TIRRSLGVCPQYNA--LFDKLTVEEHMWFYSQLKQ-VPKDLAQLEISNMIGDLGIP-HKRTSLANTLSG  189 (601)
Q Consensus       119 ~~~-~~~----~~~~~ig~v~Q~~~--~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSg  189 (601)
                      +.. ...    ..++.+||+||++.  +++..++.+|+.+.....+ ........++.++++.+|+. ...++.+.+|||
T Consensus        72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSg  151 (253)
T TIGR02323        72 LYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSG  151 (253)
T ss_pred             cccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCH
Confidence            532 221    12457999999985  4566799999976432222 12223456788999999997 478999999999


Q ss_pred             HHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHH
Q psy7365         190 GMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTV  269 (601)
Q Consensus       190 G~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~  269 (601)
                      |||||+++||+|                                      +.+                           
T Consensus       152 G~~qrv~laral--------------------------------------~~~---------------------------  166 (253)
T TIGR02323       152 GMQQRLQIARNL--------------------------------------VTR---------------------------  166 (253)
T ss_pred             HHHHHHHHHHHH--------------------------------------hcC---------------------------
Confidence            999999865432                                      222                           


Q ss_pred             HHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         270 LFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       270 ~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                              |+++||||||+|||+.+++.++++|.++.    +..|.|+|++||+++++...||++++|.+|+++..+.
T Consensus       167 --------p~vlllDEP~~~LD~~~~~~l~~~l~~~~----~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~  232 (253)
T TIGR02323       167 --------PRLVFMDEPTGGLDVSVQARLLDLLRGLV----RDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL  232 (253)
T ss_pred             --------CCEEEEcCCCccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence                    58999999999999999999999999863    2348999999999999999999999999999877654

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-34  Score=295.76  Aligned_cols=209  Identities=23%  Similarity=0.323  Sum_probs=171.1

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCC-----eeEEEEcccc
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVS-----SGTAKIYDHD  118 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~-----~G~v~~~g~~  118 (601)
                      ..++++++.|+..    .+++|+||++.+      +|||||  |||||      .++|+|+++|+     +|+|.++|.+
T Consensus         8 l~~~nl~~~~~~~----~il~~is~~i~~Ge~~~I~G~nGs--GKSTL------l~~l~Gl~~~~g~i~~~G~i~~~g~~   75 (261)
T PRK14258          8 IKVNNLSFYYDTQ----KILEGVSMEIYQSKVTAIIGPSGC--GKSTF------LKCLNRMNELESEVRVEGRVEFFNQN   75 (261)
T ss_pred             EEEeeEEEEeCCe----eEeeceEEEEcCCcEEEEECCCCC--CHHHH------HHHHhcccCCCCCccccceEEECCEE
Confidence            4589999998642    489999999988      999999  56665      67999999985     8999999998


Q ss_pred             CCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCC-ChHHHHHHHHHHHHHcCCC----cccCCccccCChH
Q psy7365         119 IRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIGDLGIP----HKRTSLANTLSGG  190 (601)
Q Consensus       119 ~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgG  190 (601)
                      +..   ....+++.++|+||++.+|+ .|+.||+.+.....+. +..+...++.++++.+|+.    +..++.+.+||||
T Consensus        76 i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG  154 (261)
T PRK14258         76 IYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGG  154 (261)
T ss_pred             hhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHH
Confidence            732   22345778999999998887 8999999887655444 3334456778899999975    3568899999999


Q ss_pred             HHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHH
Q psy7365         191 MQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVL  270 (601)
Q Consensus       191 ~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~  270 (601)
                      |+||+++||+|                                      +.+                            
T Consensus       155 q~qrv~laral--------------------------------------~~~----------------------------  168 (261)
T PRK14258        155 QQQRLCIARAL--------------------------------------AVK----------------------------  168 (261)
T ss_pred             HHHHHHHHHHH--------------------------------------hcC----------------------------
Confidence            99999865432                                      222                            


Q ss_pred             HhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecC-----Cccccc
Q psy7365         271 FAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA-----GKLQCC  345 (601)
Q Consensus       271 ~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~-----GkIv~~  345 (601)
                             |+++||||||+|||+.++..+++.|+++.    ...|.|+|++||+++++..+||++++|.+     |+++..
T Consensus       169 -------p~vllLDEP~~~LD~~~~~~l~~~l~~l~----~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~  237 (261)
T PRK14258        169 -------PKVLLMDEPCFGLDPIASMKVESLIQSLR----LRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF  237 (261)
T ss_pred             -------CCEEEEeCCCccCCHHHHHHHHHHHHHHH----HhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEe
Confidence                   58999999999999999999999999873    22489999999999999999999999998     888776


Q ss_pred             cCc
Q psy7365         346 GSS  348 (601)
Q Consensus       346 G~~  348 (601)
                      +++
T Consensus       238 ~~~  240 (261)
T PRK14258        238 GLT  240 (261)
T ss_pred             CCH
Confidence            654

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-34  Score=297.17  Aligned_cols=208  Identities=21%  Similarity=0.272  Sum_probs=167.7

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCC-----CCeeEEEEcc
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLP-----VSSGTAKIYD  116 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~-----~~~G~v~~~g  116 (601)
                      ++..+++|++.|+.    .++++|+||++.+      +|||||  |||||      .++|+|+++     |++|+|.++|
T Consensus         9 ~~l~i~~v~~~~~~----~~il~~vsl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~~~~~~~~~G~i~~~g   76 (264)
T PRK14243          9 TVLRTENLNVYYGS----FLAVKNVWLDIPKNQITAFIGPSGC--GKSTI------LRCFNRLNDLIPGFRVEGKVTFHG   76 (264)
T ss_pred             eEEEEeeeEEEECC----EEEeecceEEEcCCCEEEEECCCCC--CHHHH------HHHHHhhhcccCCCCCceEEEECC
Confidence            35669999999863    3599999999988      999999  56665      579999986     4899999999


Q ss_pred             ccCCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC----cccCCccccCCh
Q psy7365         117 HDIRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP----HKRTSLANTLSG  189 (601)
Q Consensus       117 ~~~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSg  189 (601)
                      .++..   .....++.+||+||++.+|+ .|+.||+.++....+.. ....+++.++++.+++.    +..++.+.+|||
T Consensus        77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg  154 (264)
T PRK14243         77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSG  154 (264)
T ss_pred             EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCH
Confidence            98742   23455778999999998887 59999999876544432 23345677788888874    356889999999


Q ss_pred             HHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHH
Q psy7365         190 GMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTV  269 (601)
Q Consensus       190 G~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~  269 (601)
                      |||||+++||+|                                      +.+                           
T Consensus       155 Gq~qrv~laral--------------------------------------~~~---------------------------  169 (264)
T PRK14243        155 GQQQRLCIARAI--------------------------------------AVQ---------------------------  169 (264)
T ss_pred             HHHHHHHHHHHH--------------------------------------hcC---------------------------
Confidence            999999865432                                      222                           


Q ss_pred             HHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEec---------CC
Q psy7365         270 LFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA---------AG  340 (601)
Q Consensus       270 ~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~---------~G  340 (601)
                              |+++||||||+|||+.++..++++|.++.      +++|||++||+++++..+|||+++|.         +|
T Consensus       170 --------p~lllLDEPt~~LD~~~~~~l~~~L~~~~------~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g  235 (264)
T PRK14243        170 --------PEVILMDEPCSALDPISTLRIEELMHELK------EQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYG  235 (264)
T ss_pred             --------CCEEEEeCCCccCCHHHHHHHHHHHHHHh------cCCEEEEEecCHHHHHHhCCEEEEEecccccccccCc
Confidence                    58999999999999999999999999872      24799999999999999999999998         67


Q ss_pred             ccccccCc
Q psy7365         341 KLQCCGSS  348 (601)
Q Consensus       341 kIv~~G~~  348 (601)
                      +++..++.
T Consensus       236 ~i~~~~~~  243 (264)
T PRK14243        236 YLVEFDRT  243 (264)
T ss_pred             eEEEeCCH
Confidence            77766543

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=100.00  E-value=5.7e-35  Score=294.27  Aligned_cols=205  Identities=25%  Similarity=0.378  Sum_probs=161.5

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-ch
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DM  123 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~  123 (601)
                      .++++++.|+..  ..++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++.. +.
T Consensus         2 ~~~~l~~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~~~~G~i~~~g~~~~~~~~   71 (237)
T cd03252           2 TFEHVRFRYKPD--GPVILDNISLRIKPGEVVGIVGRSGS--GKSTL------TKLIQRFYVPENGRVLVDGHDLALADP   71 (237)
T ss_pred             EEEEEEEecCCC--CccceeceEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCcCCCCCEEEECCeehHhcCH
Confidence            378999998532  24699999999988      999999  56665      679999999999999999998753 23


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHH-----HHHHHHHHc--CCCcccCCccccCChHHHhhhh
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL-----EISNMIGDL--GIPHKRTSLANTLSGGMQRKLD  196 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qr~~  196 (601)
                      ...++.+||+||++.+|+ .||.||+.++..  +........     .+.++++.+  ++....++++.+||||||||++
T Consensus        72 ~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~  148 (237)
T cd03252          72 AWLRRQVGVVLQENVLFN-RSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIA  148 (237)
T ss_pred             HHHhhcEEEEcCCchhcc-chHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHH
Confidence            445678999999998774 799999987542  222222111     234555665  6666678899999999999997


Q ss_pred             chhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccC
Q psy7365         197 NVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFV  276 (601)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  276 (601)
                      +||++                                      +.                                   
T Consensus       149 laral--------------------------------------~~-----------------------------------  155 (237)
T cd03252         149 IARAL--------------------------------------IH-----------------------------------  155 (237)
T ss_pred             HHHHH--------------------------------------hh-----------------------------------
Confidence            54432                                      22                                   


Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      +|+++||||||+|||+.++..+++.|+++     . +|+|||++||+++++. .||++++|.+|+++..++.
T Consensus       156 ~p~llllDEP~~~LD~~~~~~l~~~l~~~-----~-~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~~~  220 (237)
T cd03252         156 NPRILIFDEATSALDYESEHAIMRNMHDI-----C-AGRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSH  220 (237)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHh-----c-CCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEcCH
Confidence            25899999999999999999999999987     2 3899999999999985 6999999999999876643

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-34  Score=297.99  Aligned_cols=209  Identities=23%  Similarity=0.273  Sum_probs=171.8

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCC-----CeeEEEEcc
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPV-----SSGTAKIYD  116 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~-----~~G~v~~~g  116 (601)
                      ++..+++|++.|+.    .++++|+||++.+      +||||+  |||||      .++|+|+++|     ++|+|.++|
T Consensus        20 ~~l~i~nl~~~~~~----~~il~~vs~~i~~Ge~~~I~G~nGs--GKSTL------l~~l~Gl~~p~~~~~~~G~i~~~g   87 (276)
T PRK14271         20 PAMAAVNLTLGFAG----KTVLDQVSMGFPARAVTSLMGPTGS--GKTTF------LRTLNRMNDKVSGYRYSGDVLLGG   87 (276)
T ss_pred             cEEEEeeEEEEECC----EEEeeeeEEEEcCCcEEEEECCCCC--CHHHH------HHHHhccCCcCCCCCCceEEEECC
Confidence            35569999999863    4699999999988      999999  56665      5799999986     799999999


Q ss_pred             ccCCCc--hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcC-CChHHHHHHHHHHHHHcCCCc----ccCCccccCCh
Q psy7365         117 HDIRTD--MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ-VPKDLAQLEISNMIGDLGIPH----KRTSLANTLSG  189 (601)
Q Consensus       117 ~~~~~~--~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~----~~~~~~~~LSg  189 (601)
                      .++...  ....++.++|+||++.+|+ .|+.||+.++....+ .+..+.+.++.++++.+|+..    ..++.+.+|||
T Consensus        88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSg  166 (276)
T PRK14271         88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSG  166 (276)
T ss_pred             EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCH
Confidence            987532  2345778999999999887 899999988654333 344455566788999999974    46788999999


Q ss_pred             HHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHH
Q psy7365         190 GMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTV  269 (601)
Q Consensus       190 G~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~  269 (601)
                      ||+||+++||+|                                      +.+                           
T Consensus       167 Gq~qrl~LAral--------------------------------------~~~---------------------------  181 (276)
T PRK14271        167 GQQQLLCLARTL--------------------------------------AVN---------------------------  181 (276)
T ss_pred             HHHHHHHHHHHH--------------------------------------hcC---------------------------
Confidence            999999754432                                      222                           


Q ss_pred             HHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         270 LFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       270 ~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                              |+++||||||+|||+.+++.+.+.|+++.     . +.|||++||+++++..+|||+++|.+|+++..++.
T Consensus       182 --------p~lllLDEPt~~LD~~~~~~l~~~L~~~~-----~-~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~  246 (276)
T PRK14271        182 --------PEVLLLDEPTSALDPTTTEKIEEFIRSLA-----D-RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPT  246 (276)
T ss_pred             --------CCEEEEcCCcccCCHHHHHHHHHHHHHHh-----c-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence                    58999999999999999999999999872     2 47999999999999999999999999998876653

>KOG0062|consensus

Probab=100.00  E-value=1.1e-34  Score=309.17  Aligned_cols=350  Identities=19%  Similarity=0.254  Sum_probs=232.7

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTT  125 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~  125 (601)
                      +++.+..||    ++.-|++.+|....      +|||||  |||||      +|+|+-      |.|.....+     .+
T Consensus        83 ~~~fdLa~G----~k~LL~~a~L~L~~GrRYGLvGrNG~--GKsTL------LRaia~------~~v~~f~ve-----qE  139 (582)
T KOG0062|consen   83 IDNFDLAYG----GKILLNKANLTLSRGRRYGLVGRNGI--GKSTL------LRAIAN------GQVSGFHVE-----QE  139 (582)
T ss_pred             eeeeeeeec----chhhhcCCceeeecccccceeCCCCC--cHHHH------HHHHHh------cCcCccCch-----hh
Confidence            455555554    44578899998877      999999  56665      567765      444333221     00


Q ss_pred             hcccEEEEccCC-CCCCCCCHHHHHHHhHhh-cCCChHHHHHHHHHHHHHcCCCcc-cCCccccCChHHHhhhhchhhhc
Q psy7365         126 IRRSLGVCPQYN-ALFDKLTVEEHMWFYSQL-KQVPKDLAQLEISNMIGDLGIPHK-RTSLANTLSGGMQRKLDNVKVWF  202 (601)
Q Consensus       126 ~~~~ig~v~Q~~-~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~~qr~~~~~~~~  202 (601)
                      .+.  -+++=.- .+-.++.+.+-+.--.++ .+...+   +...++|..+|.++. ..+++++||||-|.|+++|||+|
T Consensus       140 ~~g--~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~---ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf  214 (582)
T KOG0062|consen  140 VRG--DDTEALQSVLESDTERLDFLAEEKELLAGLTLE---EIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALF  214 (582)
T ss_pred             eec--cchHHHhhhhhccHHHHHHHHhhhhhhccchHH---HHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHh
Confidence            110  0111100 122233333322211111 111222   222338999999854 67889999999999998766544


Q ss_pred             chhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEE
Q psy7365         203 NNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVI  282 (601)
Q Consensus       203 ~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~li  282 (601)
                      .+                                                                         |++|+
T Consensus       215 ~~-------------------------------------------------------------------------pDlLL  221 (582)
T KOG0062|consen  215 AK-------------------------------------------------------------------------PDLLL  221 (582)
T ss_pred             cC-------------------------------------------------------------------------CCEEe
Confidence            33                                                                         69999


Q ss_pred             EecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC---------------
Q psy7365         283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS---------------  347 (601)
Q Consensus       283 LDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~---------------  347 (601)
                      |||||+.||..+..++-+.|..+        +.|+|+||||-.|+...|.-|+-+.+-++-..-.               
T Consensus       222 LDEPTNhLDv~av~WLe~yL~t~--------~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~k~E~~~n  293 (582)
T KOG0062|consen  222 LDEPTNHLDVVAVAWLENYLQTW--------KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTKPEAKKN  293 (582)
T ss_pred             ecCCcccchhHHHHHHHHHHhhC--------CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHhhHHhhhh
Confidence            99999999999999999999764        4899999999999999999888776544321100               


Q ss_pred             ----------------------------------------------ccccc-------ccccc-----------------
Q psy7365         348 ----------------------------------------------SVFLK-------NSFAR-----------------  357 (601)
Q Consensus       348 ----------------------------------------------~~lLk-------~~~g~-----------------  357 (601)
                                                                    ++..+       ++.++                 
T Consensus       294 ~qrefe~q~~~R~h~q~fid~FrYna~ra~svqSRIk~L~kl~~lk~~~~~~~~~~~fP~~~e~~~~p~l~i~~V~f~y~  373 (582)
T KOG0062|consen  294 QQREFEVQMKYRAHLQVFIDKFRYNAARASSVQSRIKMLGKLPALKSTLIEVLIGFLFPTEGEVLSPPNLRISYVAFEYT  373 (582)
T ss_pred             hhhhcchHHHHHHHHHHHHHHhccCcccchhHHHHHHHhccCCCCCccceecccceecCCCCCcCCCCeeEEEeeeccCC
Confidence                                                          00000       00000                 


Q ss_pred             --ccc----cccc---------------------------cC------CcccccccccCCCCcccCCCCCHHHHHHHhHH
Q psy7365         358 --GYY----LSLD---------------------------MK------SAPQKSYIGYCPQFDALNDRLTPREHLEFYSR  398 (601)
Q Consensus       358 --g~~----igld---------------------------~~------~~~~~~~ig~v~Q~~~l~~~lTv~E~L~~~~~  398 (601)
                        .|.    .+.+                           ..      ....|.+++|..|+..=+.++.|-+.-.....
T Consensus       374 p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~  453 (582)
T KOG0062|consen  374 PSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKS  453 (582)
T ss_pred             CcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHh
Confidence              000    0000                           00      01124678999987543334444432222223


Q ss_pred             hcCCChhHHHHHHHHHHHHcCCC-cccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q psy7365         399 VRNLPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAV  477 (601)
Q Consensus       399 ~~g~~~~~~~~~~~~lLe~~~L~-~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~  477 (601)
                      ..|.+    ++.+++-+..|||+ +...+++.+||||||-||++|.+...+|.+|+|||||+.||..+...+...|+.+ 
T Consensus       454 ~pG~~----~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F-  528 (582)
T KOG0062|consen  454 FPGKT----EEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF-  528 (582)
T ss_pred             CCCCC----HHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc-
Confidence            33443    45677889999997 5677788999999999999999999999999999999999999999999999887 


Q ss_pred             hCCcEEEEEccChhHHHhhCCEEEEEeCCEEEE-ecCHHHH
Q psy7365         478 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTC-LGSATHL  517 (601)
Q Consensus       478 ~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~-~G~~~~L  517 (601)
                        +..||++|||.+++..+|+.+++.++|++.. .|...+-
T Consensus       529 --~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~~~y  567 (582)
T KOG0062|consen  529 --NGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGIDKY  567 (582)
T ss_pred             --CCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccHHHH
Confidence              4579999999999999999999999999864 4555443

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=100.00  E-value=2.2e-34  Score=288.34  Aligned_cols=195  Identities=21%  Similarity=0.224  Sum_probs=161.8

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM  123 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~  123 (601)
                      ..++++++.|++    .++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++..  
T Consensus        23 l~~~~~~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~G~~~p~~G~i~~~g~~~~~--   88 (224)
T cd03220          23 LGILGRKGEVGE----FWALKDVSFEVPRGERIGLIGRNGA--GKSTL------LRLLAGIYPPDSGTVTVRGRVSSL--   88 (224)
T ss_pred             hhhhhhhhhcCC----eEEEeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCceEEEECCEEchh--
Confidence            448899998765    4599999999988      999999  56665      579999999999999999987521  


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcc
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFN  203 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~  203 (601)
                               ..+...+++.+||.||+.++....+.+..+.++++.++++.+|+.+..++++.+||||||||+++||+|  
T Consensus        89 ---------~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral--  157 (224)
T cd03220          89 ---------LGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIAT--  157 (224)
T ss_pred             ---------hcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH--
Confidence                     111234567899999999887666655555666788999999999999999999999999999754432  


Q ss_pred             hhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEE
Q psy7365         204 NKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVIL  283 (601)
Q Consensus       204 ~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liL  283 (601)
                                                          +++                                   |+++||
T Consensus       158 ------------------------------------~~~-----------------------------------p~llll  166 (224)
T cd03220         158 ------------------------------------ALE-----------------------------------PDILLI  166 (224)
T ss_pred             ------------------------------------hcC-----------------------------------CCEEEE
Confidence                                                222                                   589999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc
Q psy7365         284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  345 (601)
Q Consensus       284 DEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~  345 (601)
                      ||||+|||+.+++.+++.|.++.     .+|+|||++||+.+++..+||++++|.+|+++..
T Consensus       167 DEP~~gLD~~~~~~~~~~l~~~~-----~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  223 (224)
T cd03220         167 DEVLAVGDAAFQEKCQRRLRELL-----KQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFD  223 (224)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHH-----hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence            99999999999999999999872     3488999999999999999999999999998654

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=100.00  E-value=1.2e-34  Score=291.25  Aligned_cols=204  Identities=26%  Similarity=0.382  Sum_probs=163.5

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-ch
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DM  123 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~  123 (601)
                      .++++++.|++.  ..++++++||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. ..
T Consensus         2 ~~~~l~~~~~~~--~~~~l~~i~~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~~~~~~~   71 (234)
T cd03251           2 EFKNVTFRYPGD--GPPVLRDISLDIPAGETVALVGPSGS--GKSTL------VNLIPRFYDVDSGRILIDGHDVRDYTL   71 (234)
T ss_pred             EEEEEEEEeCCC--CccceeeeeEEEcCCCEEEEECCCCC--CHHHH------HHHHhccccCCCCEEEECCEEhhhCCH
Confidence            378999998543  23589999999988      999999  56665      579999999999999999988753 33


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHH-----HHHHHHHHc--CCCcccCCccccCChHHHhhhh
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL-----EISNMIGDL--GIPHKRTSLANTLSGGMQRKLD  196 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qr~~  196 (601)
                      ...++.+||+||++.+|+ .|+.||+.++....  .......     .+.+.++.+  |+....++++.+||||||||++
T Consensus        72 ~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~  148 (234)
T cd03251          72 ASLRRQIGLVSQDVFLFN-DTVAENIAYGRPGA--TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIA  148 (234)
T ss_pred             HHHHhhEEEeCCCCeecc-ccHHHHhhccCCCC--CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHH
Confidence            445678999999998886 69999998865422  2222221     245666776  7787888899999999999998


Q ss_pred             chhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccC
Q psy7365         197 NVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFV  276 (601)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  276 (601)
                      +||+|+                                      .+                                  
T Consensus       149 la~al~--------------------------------------~~----------------------------------  156 (234)
T cd03251         149 IARALL--------------------------------------KD----------------------------------  156 (234)
T ss_pred             HHHHHh--------------------------------------cC----------------------------------
Confidence            654322                                      22                                  


Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                       |+++||||||+|||+.+++.+++.|+++     . +|.|||++||+++++.. ||++++|.+|++...+.
T Consensus       157 -p~lllLDEP~~~LD~~~~~~l~~~l~~~-----~-~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~  219 (234)
T cd03251         157 -PPILILDEATSALDTESERLVQAALERL-----M-KNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGT  219 (234)
T ss_pred             -CCEEEEeCccccCCHHHHHHHHHHHHHh-----c-CCCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCC
Confidence             5899999999999999999999999987     2 37899999999999976 99999999999876654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-34  Score=292.49  Aligned_cols=208  Identities=24%  Similarity=0.334  Sum_probs=168.9

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCC--C---CeeEEEEccc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLP--V---SSGTAKIYDH  117 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~--~---~~G~v~~~g~  117 (601)
                      +..+++|++.|+.    .++++|+||++.+      +||||+  |||||      .++|+|+++  |   ++|+|.++|.
T Consensus         5 ~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGs--GKSTL------l~~l~Gl~~~~~~~~~~G~i~~~g~   72 (252)
T PRK14255          5 IITSSDVHLFYGK----FEALKGIDLDFNQNEITALIGPSGC--GKSTY------LRTLNRMNDLIPGVTITGNVSLRGQ   72 (252)
T ss_pred             eEEEEeEEEEECC----eeEEecceEEEcCCCEEEEECCCCC--CHHHH------HHHHhcccccCCCCCcccEEEEcCE
Confidence            3458999999863    4599999999988      999999  57665      679999975  5   5999999999


Q ss_pred             cCCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCCh-HHHHHHHHHHHHHcCCC----cccCCccccCCh
Q psy7365         118 DIRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK-DLAQLEISNMIGDLGIP----HKRTSLANTLSG  189 (601)
Q Consensus       118 ~~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~gl~----~~~~~~~~~LSg  189 (601)
                      ++..   .....++.+||+||++.+|+ .|+.||+.++....+... +....++.+.++.+++.    +..++.+.+|||
T Consensus        73 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~  151 (252)
T PRK14255         73 NIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSG  151 (252)
T ss_pred             EcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCH
Confidence            8743   23345678999999999887 799999998765555432 33345677888888864    456889999999


Q ss_pred             HHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHH
Q psy7365         190 GMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTV  269 (601)
Q Consensus       190 G~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~  269 (601)
                      |||||+++||+|+                                      .+                           
T Consensus       152 Gq~qrv~laral~--------------------------------------~~---------------------------  166 (252)
T PRK14255        152 GQQQRVCIARVLA--------------------------------------VK---------------------------  166 (252)
T ss_pred             HHHHHHHHHHHHh--------------------------------------cC---------------------------
Confidence            9999998654332                                      22                           


Q ss_pred             HHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         270 LFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       270 ~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                              |+++||||||+|||+.++..+.+.|+++.      ++.|+|++||+++++...||++++|++|+++..+++
T Consensus       167 --------p~llllDEPt~~LD~~~~~~l~~~l~~~~------~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~  231 (252)
T PRK14255        167 --------PDVILLDEPTSALDPISSTQIENMLLELR------DQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADT  231 (252)
T ss_pred             --------CCEEEEcCCCccCCHHHHHHHHHHHHHHH------hCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence                    58999999999999999999999999872      247999999999999999999999999999876644

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=100.00  E-value=9.7e-35  Score=289.20  Aligned_cols=198  Identities=26%  Similarity=0.359  Sum_probs=158.3

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-ch
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DM  123 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~  123 (601)
                      .+++|++.|++.  ..++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++.. ..
T Consensus         4 ~~~~l~~~~~~~--~~~~l~~i~~~i~~G~~~~i~G~nGs--GKSTL------l~~i~G~~~~~~G~i~~~g~~~~~~~~   73 (220)
T cd03245           4 EFRNVSFSYPNQ--EIPALDNVSLTIRAGEKVAIIGRVGS--GKSTL------LKLLAGLYKPTSGSVLLDGTDIRQLDP   73 (220)
T ss_pred             EEEEEEEEcCCC--CcccccceEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCcCCCCCeEEECCEEhHHCCH
Confidence            378999998532  24699999999988      999999  56655      579999999999999999998743 23


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCcc-----------ccCChHHH
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLA-----------NTLSGGMQ  192 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgG~~  192 (601)
                      ...++.++|+||++.+|+ .|+.||+.++...  ..    ..++.++++.+++.+..++.+           .+||||||
T Consensus        74 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~--~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~  146 (220)
T cd03245          74 ADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL--AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQR  146 (220)
T ss_pred             HHHHhhEEEeCCCCcccc-chHHHHhhcCCCC--CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHH
Confidence            345678999999998886 6999999775321  11    234567888888877666544           69999999


Q ss_pred             hhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHh
Q psy7365         193 RKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFA  272 (601)
Q Consensus       193 qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  272 (601)
                      ||+++||+|                                      +.+                              
T Consensus       147 qrl~la~al--------------------------------------~~~------------------------------  158 (220)
T cd03245         147 QAVALARAL--------------------------------------LND------------------------------  158 (220)
T ss_pred             HHHHHHHHH--------------------------------------hcC------------------------------
Confidence            999764432                                      222                              


Q ss_pred             hccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc
Q psy7365         273 MSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  345 (601)
Q Consensus       273 ~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~  345 (601)
                           |+++||||||+|||+.++..+++.|+++.     . ++|||++||++++. .+||++++|.+|+++..
T Consensus       159 -----p~llllDEPt~~LD~~~~~~l~~~l~~~~-----~-~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~  219 (220)
T cd03245         159 -----PPILLLDEPTSAMDMNSEERLKERLRQLL-----G-DKTLIIITHRPSLL-DLVDRIIVMDSGRIVAD  219 (220)
T ss_pred             -----CCEEEEeCccccCCHHHHHHHHHHHHHhc-----C-CCEEEEEeCCHHHH-HhCCEEEEEeCCeEeec
Confidence                 58999999999999999999999999872     2 38999999999987 69999999999987643

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=100.00  E-value=1.6e-34  Score=281.73  Aligned_cols=175  Identities=22%  Similarity=0.323  Sum_probs=145.3

Q ss_pred             cceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC---chHHhcccEEEEccC
Q psy7365          66 SYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT---DMTTIRRSLGVCPQY  136 (601)
Q Consensus        66 ~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~---~~~~~~~~ig~v~Q~  136 (601)
                      ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++..   .....++.+||+||+
T Consensus         5 ~~il~~vsl~i~~Ge~~~i~G~nGs--GKSTL------l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~   76 (190)
T TIGR01166         5 PEVLKGLNFAAERGEVLALLGANGA--GKSTL------LLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQD   76 (190)
T ss_pred             cceecceeEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecC
Confidence            4689999999988      999999  56665      579999999999999999998742   223456789999999


Q ss_pred             CC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhh
Q psy7365         137 NA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMN  215 (601)
Q Consensus       137 ~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~  215 (601)
                      +. .++..||.||+.|.....+.+..+..+++.++++.+||.+..++++.+||||||||+++||+|              
T Consensus        77 ~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral--------------  142 (190)
T TIGR01166        77 PDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAV--------------  142 (190)
T ss_pred             hhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHH--------------
Confidence            84 334579999999876555666556667789999999999999999999999999999754432              


Q ss_pred             hhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHH
Q psy7365         216 AANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSR  295 (601)
Q Consensus       216 ~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~  295 (601)
                                              +.+                                   |+++||||||+|||+.++
T Consensus       143 ------------------------~~~-----------------------------------p~llllDEPt~~LD~~~~  163 (190)
T TIGR01166       143 ------------------------AMR-----------------------------------PDVLLLDEPTAGLDPAGR  163 (190)
T ss_pred             ------------------------hcC-----------------------------------CCEEEEcCCcccCCHHHH
Confidence                                    233                                   589999999999999999


Q ss_pred             HHHHHHHHHHhhhccccCCcEEEEEecchhH
Q psy7365         296 RSIWELLIKVYYASHSLSGRTVILTTHYMDE  326 (601)
Q Consensus       296 ~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~  326 (601)
                      ..++++|+++.     .+|+|||++||++++
T Consensus       164 ~~~~~~l~~~~-----~~~~tili~sH~~~~  189 (190)
T TIGR01166       164 EQMLAILRRLR-----AEGMTVVISTHDVDL  189 (190)
T ss_pred             HHHHHHHHHHH-----HcCCEEEEEeecccc
Confidence            99999999873     358999999999875

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=2.1e-34  Score=284.08  Aligned_cols=187  Identities=19%  Similarity=0.202  Sum_probs=154.4

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCC---CCeeEEEEccccCCC
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLP---VSSGTAKIYDHDIRT  121 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~---~~~G~v~~~g~~~~~  121 (601)
                      .++||++.|.+.+.+.++++|+||++.+      +|||||  |||||      .++|+|+++   |++|+|.++|.++..
T Consensus         5 ~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~G~~~~~~~~~G~i~i~g~~~~~   76 (202)
T cd03233           5 SWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGS--GCSTL------LKALANRTEGNVSVEGDIHYNGIPYKE   76 (202)
T ss_pred             EEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCC--CHHHH------HHHhcccCCCCCCcceEEEECCEECcc
Confidence            3899999998776678899999999988      999999  56665      579999999   899999999998865


Q ss_pred             chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhh
Q psy7365         122 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVW  201 (601)
Q Consensus       122 ~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~  201 (601)
                      .....++.++|+||++.+|+.+||.||+.++....                       .++++.+|||||+||+++||||
T Consensus        77 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----------------------~~~~~~~LS~Ge~qrl~laral  133 (202)
T cd03233          77 FAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK-----------------------GNEFVRGISGGERKRVSIAEAL  133 (202)
T ss_pred             chhhhcceEEEEecccccCCCCcHHHHHhhhhhhc-----------------------cccchhhCCHHHHHHHHHHHHH
Confidence            43455778999999999999999999998754211                       5678899999999999865433


Q ss_pred             cchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEE
Q psy7365         202 FNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTV  281 (601)
Q Consensus       202 ~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~l  281 (601)
                                                            +++                                   |+++
T Consensus       134 --------------------------------------~~~-----------------------------------p~ll  140 (202)
T cd03233         134 --------------------------------------VSR-----------------------------------ASVL  140 (202)
T ss_pred             --------------------------------------hhC-----------------------------------CCEE
Confidence                                                  233                                   5899


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEE-ecchhHHHhcCCEEEEecCCccccc
Q psy7365         282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILT-THYMDEADLLGDRIAIIAAGKLQCC  345 (601)
Q Consensus       282 iLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~-tHdl~~~~~l~Drv~vL~~GkIv~~  345 (601)
                      ||||||+|||+.+++.++++|+++.    +..+.|+|++ +|+.+++...||++++|.+|+++..
T Consensus       141 llDEPt~~LD~~~~~~~~~~l~~~~----~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~  201 (202)
T cd03233         141 CWDNSTRGLDSSTALEILKCIRTMA----DVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYY  201 (202)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHH----HhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEec
Confidence            9999999999999999999999873    2235665554 5667899999999999999998643

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=100.00  E-value=3.2e-34  Score=291.39  Aligned_cols=211  Identities=19%  Similarity=0.229  Sum_probs=168.7

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCC--CCCCeeEEEEccccCC
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGM--LPVSSGTAKIYDHDIR  120 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl--~~~~~G~v~~~g~~~~  120 (601)
                      +..+++|++.|++    .++++|+||++.+      +|||||  |||||      .++|+|+  ++|++|+|.++|.++.
T Consensus         7 ~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~i~Gl~~~~~~~G~i~~~g~~~~   74 (252)
T CHL00131          7 ILEIKNLHASVNE----NEILKGLNLSINKGEIHAIMGPNGS--GKSTL------SKVIAGHPAYKILEGDILFKGESIL   74 (252)
T ss_pred             eEEEEeEEEEeCC----EEeeecceeEEcCCcEEEEECCCCC--CHHHH------HHHHcCCCcCcCCCceEEECCEEcc
Confidence            3458999999853    3599999999988      999999  56655      5799998  5899999999999875


Q ss_pred             Cc-hHHhc-ccEEEEccCCCCCCCCCHHHHHHHhHhhc----CC---ChHHHHHHHHHHHHHcCCC-cccCCccc-cCCh
Q psy7365         121 TD-MTTIR-RSLGVCPQYNALFDKLTVEEHMWFYSQLK----QV---PKDLAQLEISNMIGDLGIP-HKRTSLAN-TLSG  189 (601)
Q Consensus       121 ~~-~~~~~-~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~----~~---~~~~~~~~~~~~l~~~gl~-~~~~~~~~-~LSg  189 (601)
                      .. ....+ ..++|+||++.+|+.+|+.+++.+.....    +.   ...+...++.++++.+|+. ...++.+. +|||
T Consensus        75 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSg  154 (252)
T CHL00131         75 DLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSG  154 (252)
T ss_pred             cCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCH
Confidence            42 22222 25899999999999999999998754321    11   1223345678899999997 46788887 5999


Q ss_pred             HHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHH
Q psy7365         190 GMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTV  269 (601)
Q Consensus       190 G~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~  269 (601)
                      |||||+++||+|                                      +.+                           
T Consensus       155 G~~qrv~la~al--------------------------------------~~~---------------------------  169 (252)
T CHL00131        155 GEKKRNEILQMA--------------------------------------LLD---------------------------  169 (252)
T ss_pred             HHHHHHHHHHHH--------------------------------------HcC---------------------------
Confidence            999999865432                                      233                           


Q ss_pred             HHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhc-CCEEEEecCCccccccCc
Q psy7365         270 LFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLL-GDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       270 ~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l-~Drv~vL~~GkIv~~G~~  348 (601)
                              |+++||||||+|||+.+++.++++|+++.     .+|.|||++||+++++... ||++++|.+|+++..+++
T Consensus       170 --------p~llllDEPt~~LD~~~~~~l~~~l~~~~-----~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~  236 (252)
T CHL00131        170 --------SELAILDETDSGLDIDALKIIAEGINKLM-----TSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDA  236 (252)
T ss_pred             --------CCEEEEcCCcccCCHHHHHHHHHHHHHHH-----hCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecCh
Confidence                    58999999999999999999999999873     3589999999999999886 999999999999877654


Q ss_pred             c
Q psy7365         349 V  349 (601)
Q Consensus       349 ~  349 (601)
                      .
T Consensus       237 ~  237 (252)
T CHL00131        237 E  237 (252)
T ss_pred             h
Confidence            3

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.7e-34  Score=293.23  Aligned_cols=209  Identities=23%  Similarity=0.299  Sum_probs=169.9

Q ss_pred             chhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCC-----CeeEEEEc
Q psy7365          47 AYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPV-----SSGTAKIY  115 (601)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~-----~~G~v~~~  115 (601)
                      ..+..++.+++.|++    ..+++|+||++.+      +||||+  |||||      .++|+|+++|     ++|+|.++
T Consensus         6 ~~~~~~~~~~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~p~~~~~~~G~i~~~   73 (261)
T PRK14263          6 PIVMDCKLDKIFYGN----FMAVRDSHVPIRKNEITGFIGPSGC--GKSTV------LRSLNRMNDLVKGFRFEGHVHFL   73 (261)
T ss_pred             CceEEEEeEEEEeCC----EEEEeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHHcccccccCCCCceEEEEC
Confidence            344557888888754    4599999999998      999999  56665      5799999986     79999999


Q ss_pred             cccCCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCc----ccCCccccCC
Q psy7365         116 DHDIRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPH----KRTSLANTLS  188 (601)
Q Consensus       116 g~~~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----~~~~~~~~LS  188 (601)
                      |.++..   .....++.+||+||++.+| .+|+.||+.++....+.. .+...++.++++.+|+.+    ..++++.+||
T Consensus        74 g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS  151 (261)
T PRK14263         74 GQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLS  151 (261)
T ss_pred             CEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCC
Confidence            998743   2234567899999999887 699999999876654433 334567889999999864    3467889999


Q ss_pred             hHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHH
Q psy7365         189 GGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVT  268 (601)
Q Consensus       189 gG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~  268 (601)
                      |||+||+++||||+                                      .+                          
T Consensus       152 ~G~~qrv~laral~--------------------------------------~~--------------------------  167 (261)
T PRK14263        152 GGQQQRLCIARAIA--------------------------------------TE--------------------------  167 (261)
T ss_pred             HHHHHHHHHHHHHH--------------------------------------cC--------------------------
Confidence            99999997654332                                      22                          


Q ss_pred             HHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEec--------CC
Q psy7365         269 VLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA--------AG  340 (601)
Q Consensus       269 ~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~--------~G  340 (601)
                               |+++||||||+|||+.++..++++|+++.      ++.|+|++||+++++..+|||+++|.        +|
T Consensus       168 ---------p~llllDEPtsgLD~~~~~~l~~~l~~~~------~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G  232 (261)
T PRK14263        168 ---------PEVLLLDEPCSALDPIATRRVEELMVELK------KDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTG  232 (261)
T ss_pred             ---------CCEEEEeCCCccCCHHHHHHHHHHHHHHh------cCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCc
Confidence                     58999999999999999999999999872      36899999999999999999999995        78


Q ss_pred             ccccccCc
Q psy7365         341 KLQCCGSS  348 (601)
Q Consensus       341 kIv~~G~~  348 (601)
                      +++..+..
T Consensus       233 ~i~~~g~~  240 (261)
T PRK14263        233 YLVEMGPT  240 (261)
T ss_pred             eEEEeCCH
Confidence            88876653

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.1e-35  Score=294.76  Aligned_cols=179  Identities=23%  Similarity=0.384  Sum_probs=153.6

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-----chHHhcccEEEEccCCCCCCCCCHHHHHHHhH
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-----DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYS  153 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-----~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~  153 (601)
                      .|+||+  |||||      .|||+|+++|+.|.|.++|+.+..     ....-+++||||||+..+||++||+.|+.|+.
T Consensus        30 FG~SGs--GKTsl------in~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~  101 (352)
T COG4148          30 FGPSGS--GKTSL------INMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGM  101 (352)
T ss_pred             ecCCCC--ChhhH------HHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhh
Confidence            799999  67765      679999999999999999997642     12234678999999999999999999999876


Q ss_pred             hhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcc
Q psy7365         154 QLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRD  233 (601)
Q Consensus       154 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~  233 (601)
                      ...      .....+++.+.+||+++.+|+|.+|||||||||+|+|||                                
T Consensus       102 ~~~------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRAL--------------------------------  143 (352)
T COG4148         102 WKS------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRAL--------------------------------  143 (352)
T ss_pred             ccc------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHH--------------------------------
Confidence            543      334577889999999999999999999999999865433                                


Q ss_pred             hhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccC
Q psy7365         234 DYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLS  313 (601)
Q Consensus       234 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~  313 (601)
                            +..                                   |++|+||||.++||..-++++.-.|.++.+    +-
T Consensus       144 ------Lt~-----------------------------------P~LLLmDEPLaSLD~~RK~EilpylERL~~----e~  178 (352)
T COG4148         144 ------LTA-----------------------------------PELLLMDEPLASLDLPRKREILPYLERLRD----EI  178 (352)
T ss_pred             ------hcC-----------------------------------CCeeeecCchhhcccchhhHHHHHHHHHHH----hc
Confidence                  222                                   589999999999999999999999999953    45


Q ss_pred             CcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      ...|+++||.++|+.+++|++++|++|++.+.|..
T Consensus       179 ~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~  213 (352)
T COG4148         179 NIPILYVSHSLDEVLRLADRVVVLENGKVKASGPL  213 (352)
T ss_pred             CCCEEEEecCHHHHHhhhheEEEecCCeEEecCcH
Confidence            78999999999999999999999999999988853

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-34  Score=296.65  Aligned_cols=207  Identities=20%  Similarity=0.308  Sum_probs=164.6

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM  123 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~  123 (601)
                      ..+++|++.|++   +..+++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++..  
T Consensus         7 l~~~~l~~~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~i~~--   73 (272)
T PRK15056          7 IVVNDVTVTWRN---GHTALRDASFTVPGGSIAALVGVNGS--GKSTL------FKALMGFVRLASGKISILGQPTRQ--   73 (272)
T ss_pred             EEEEeEEEEecC---CcEEEEeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCceEEEECCEEhHH--
Confidence            458999999852   24599999999988      999999  56665      679999999999999999998742  


Q ss_pred             HHhcccEEEEccCCCCC--CCCCHHHHHHHhHh----hcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhc
Q psy7365         124 TTIRRSLGVCPQYNALF--DKLTVEEHMWFYSQ----LKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDN  197 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~--~~~tv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~  197 (601)
                      ...++.+||+||++.++  ...++.+++.++..    ..+.+....+.++.++++.+|+.+..++++.+||||||||+++
T Consensus        74 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~l  153 (272)
T PRK15056         74 ALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFL  153 (272)
T ss_pred             hhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHH
Confidence            12234699999998652  23578888865321    1112223345567889999999998999999999999999986


Q ss_pred             hhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCC
Q psy7365         198 VKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVP  277 (601)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  277 (601)
                      ||+|                                      +.+                                   
T Consensus       154 araL--------------------------------------~~~-----------------------------------  160 (272)
T PRK15056        154 ARAI--------------------------------------AQQ-----------------------------------  160 (272)
T ss_pred             HHHH--------------------------------------hcC-----------------------------------
Confidence            5432                                      222                                   


Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      |+++||||||+|||+.+++.+.++|.++.     .+|+|||++||+++++..+||+++++ +|+++..+++
T Consensus       161 p~llllDEPt~~LD~~~~~~l~~~L~~~~-----~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~  225 (272)
T PRK15056        161 GQVILLDEPFTGVDVKTEARIISLLRELR-----DEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPT  225 (272)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHHHHHH-----hCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCH
Confidence            58999999999999999999999999873     35899999999999999999999877 8998876654

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4e-34  Score=302.20  Aligned_cols=211  Identities=19%  Similarity=0.283  Sum_probs=172.7

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCC-----CCeeEEEEccc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLP-----VSSGTAKIYDH  117 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~-----~~~G~v~~~g~  117 (601)
                      ++.++++++.|..  ...++++|+||++.+      +|||||  |||||      .++|+|+.+     |++|+|.++|.
T Consensus        80 ~i~~~nls~~y~~--~~~~~L~~is~~I~~Ge~v~IvG~~Gs--GKSTL------l~~L~g~~~~~~~~p~~G~I~idG~  149 (329)
T PRK14257         80 VFEIRNFNFWYMN--RTKHVLHDLNLDIKRNKVTAFIGPSGC--GKSTF------LRNLNQLNDLIEGTSHEGEIYFLGT  149 (329)
T ss_pred             eEEEEeeEEEecC--CCceeeeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhccccccCCCCCceEEEECCE
Confidence            4569999999853  235699999999988      999999  56655      579999986     57999999999


Q ss_pred             cCCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHH-HHHHHHHHHHHcCCC----cccCCccccCCh
Q psy7365         118 DIRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDL-AQLEISNMIGDLGIP----HKRTSLANTLSG  189 (601)
Q Consensus       118 ~~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~-~~~~~~~~l~~~gl~----~~~~~~~~~LSg  189 (601)
                      ++..   ....+++++||+||+|.+|. .|++||+.|+....+.+..+ ..+.+.++++.++|.    ...++++.+|||
T Consensus       150 ~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSg  228 (329)
T PRK14257        150 NTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSG  228 (329)
T ss_pred             EccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCH
Confidence            9853   22456788999999999884 79999999876544444332 334567889998874    356889999999


Q ss_pred             HHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHH
Q psy7365         190 GMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTV  269 (601)
Q Consensus       190 G~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~  269 (601)
                      |||||+++||||+                                      .+                           
T Consensus       229 GqkqRl~LARAl~--------------------------------------~~---------------------------  243 (329)
T PRK14257        229 GQQQRLCIARAIA--------------------------------------LE---------------------------  243 (329)
T ss_pred             HHHHHHHHHHHHH--------------------------------------hC---------------------------
Confidence            9999998655433                                      22                           


Q ss_pred             HHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         270 LFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       270 ~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                              |+++||||||++||+.+...+.+.|+++.      +++|+|++||+++++.++||||++|.+|+++..|++.
T Consensus       244 --------p~IlLLDEPts~LD~~~~~~i~~~i~~l~------~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~  309 (329)
T PRK14257        244 --------PEVLLMDEPTSALDPIATAKIEELILELK------KKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETK  309 (329)
T ss_pred             --------CCEEEEeCCcccCCHHHHHHHHHHHHHHh------cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence                    58999999999999999999999999872      3689999999999999999999999999999888654

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-34  Score=294.06  Aligned_cols=208  Identities=20%  Similarity=0.268  Sum_probs=179.1

Q ss_pred             CCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCcc-------cccccccCC
Q psy7365         313 SGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSAP-------QKSYIGYCP  378 (601)
Q Consensus       313 ~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~~-------~~~~ig~v~  378 (601)
                      .|.++=+  ++.++...-+...++|+=.   .+|+++++       .++.|+..+.+.|+....       .++++++||
T Consensus        38 tg~vvGv--~~~sl~v~~GeIfViMGLS---GSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVF  112 (386)
T COG4175          38 TGLVVGV--NDASLDVEEGEIFVIMGLS---GSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVF  112 (386)
T ss_pred             hCcEEee--ccceeeecCCeEEEEEecC---CCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhh
Confidence            4665543  8888888888888888631   14555443       344555555555543322       357899999


Q ss_pred             CCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCC
Q psy7365         379 QFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPT  458 (601)
Q Consensus       379 Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPT  458 (601)
                      |+.+++|+.||.||..|...+.|.++.+.++++.++|+.+||.++.+++|.+|||||||||.|||||+.+|++|++|||+
T Consensus       113 Q~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaF  192 (386)
T COG4175         113 QSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAF  192 (386)
T ss_pred             hhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHhCCce
Q psy7365         459 SGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGY  525 (601)
Q Consensus       459 sGLD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~~~~~  525 (601)
                      |.|||--|.++.+.|.+|.++ ++||+++|||++|+.++.|||++|++|+|+..|+|+|+.......|
T Consensus       193 SALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAndY  260 (386)
T COG4175         193 SALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDY  260 (386)
T ss_pred             hhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCccHHH
Confidence            999999999999999999766 8999999999999999999999999999999999999976554444

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.6e-34  Score=294.57  Aligned_cols=207  Identities=25%  Similarity=0.316  Sum_probs=167.2

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCC-----CeeEEEEccc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPV-----SSGTAKIYDH  117 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~-----~~G~v~~~g~  117 (601)
                      +..+++|++.|++    .++++|+||++.+      +|||||  |||||      .++|+|+++|     ++|+|.++|.
T Consensus        20 ~l~~~nl~~~~~~----~~~l~~vs~~i~~Ge~~~IiG~nGs--GKSTL------l~~l~Gl~~~~~~~~~~G~i~~~g~   87 (274)
T PRK14265         20 VFEVEGVKVFYGG----FLALVDVHLKIPAKKIIAFIGPSGC--GKSTL------LRCFNRMNDLIPGAKVEGRLLYRDR   87 (274)
T ss_pred             eEEEeeEEEEeCC----eEEEeeeeeEEcCCCEEEEECCCCC--CHHHH------HHHHhcccccccCCCcCceEEECCE
Confidence            4568999999864    3599999999988      999999  56665      6799999863     6999999999


Q ss_pred             cCCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC----cccCCccccCChH
Q psy7365         118 DIRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP----HKRTSLANTLSGG  190 (601)
Q Consensus       118 ~~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgG  190 (601)
                      ++..   .....++++||+||++.+|+. |+.||+.++....+... .....+.++++.+++.    +..++++.+||||
T Consensus        88 ~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG  165 (274)
T PRK14265         88 NIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGTALSGG  165 (274)
T ss_pred             ecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCchH-HHHHHHHHHHHHcccchhhHHHhcCCcccCCHH
Confidence            8743   223456789999999988864 99999998755444322 2334567788888873    4578899999999


Q ss_pred             HHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHH
Q psy7365         191 MQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVL  270 (601)
Q Consensus       191 ~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~  270 (601)
                      ||||+++||||+                                      .+                            
T Consensus       166 q~qrv~LAraL~--------------------------------------~~----------------------------  179 (274)
T PRK14265        166 QQQRLCIARAIA--------------------------------------MK----------------------------  179 (274)
T ss_pred             HHHHHHHHHHHh--------------------------------------hC----------------------------
Confidence            999998654332                                      22                            


Q ss_pred             HhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEec---------CCc
Q psy7365         271 FAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA---------AGK  341 (601)
Q Consensus       271 ~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~---------~Gk  341 (601)
                             |+++||||||+|||+.++..++++|+++.      ++.|||++||+++++..+||++++|.         +|+
T Consensus       180 -------p~lllLDEPt~~LD~~~~~~l~~~L~~~~------~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~  246 (274)
T PRK14265        180 -------PDVLLMDEPCSALDPISTRQVEELCLELK------EQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGK  246 (274)
T ss_pred             -------CCEEEEeCCcccCCHHHHHHHHHHHHHHh------cCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCce
Confidence                   58999999999999999999999999872      36899999999999999999999997         688


Q ss_pred             cccccCc
Q psy7365         342 LQCCGSS  348 (601)
Q Consensus       342 Iv~~G~~  348 (601)
                      ++..+.+
T Consensus       247 ~~~~g~~  253 (274)
T PRK14265        247 LVEFSPT  253 (274)
T ss_pred             EEEeCCH
Confidence            8776654

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-34  Score=268.88  Aligned_cols=208  Identities=23%  Similarity=0.339  Sum_probs=180.4

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCC--C-
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIR--T-  121 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~--~-  121 (601)
                      .+.++++.||..    +++-|++|+...      +||||+  |||||      .|.++=+..|.||+..|.|....  + 
T Consensus         4 rv~~in~~yg~~----q~lfdi~l~~~~getlvllgpsga--gkssl------lr~lnlle~p~sg~l~ia~~~fd~s~~   71 (242)
T COG4161           4 QLNGINCFYGAH----QALFDITLDCPEGETLVLLGPSGA--GKSSL------LRVLNLLEMPRSGTLNIAGNHFDFSKT   71 (242)
T ss_pred             EEcccccccccc----hheeeeeecCCCCCEEEEECCCCC--chHHH------HHHHHHHhCCCCCeEEecccccccccC
Confidence            367788887654    499999999876      999999  56655      56889889999999999987542  1 


Q ss_pred             ----chHHhcccEEEEccCCCCCCCCCHHHHHHH-hHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhh
Q psy7365         122 ----DMTTIRRSLGVCPQYNALFDKLTVEEHMWF-YSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD  196 (601)
Q Consensus       122 ----~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~  196 (601)
                          ....+|+.+|+|||...++|++||.||+.- .+...|+++++++.++.++|+++.|.++.|+.|-.|||||+|||+
T Consensus        72 ~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrva  151 (242)
T COG4161          72 PSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVA  151 (242)
T ss_pred             ccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHH
Confidence                234578899999999999999999999864 567889999999999999999999999999999999999999997


Q ss_pred             chhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccC
Q psy7365         197 NVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFV  276 (601)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  276 (601)
                      |||                        |+|                                                 .
T Consensus       152 iar------------------------alm-------------------------------------------------m  158 (242)
T COG4161         152 IAR------------------------ALM-------------------------------------------------M  158 (242)
T ss_pred             HHH------------------------HHh-------------------------------------------------c
Confidence            543                        321                                                 2


Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      .|++|++||||++|||.-...+.++|+++     ...|.|-+++||.++.+.+.+.+|+.|.+|+|+..|+.
T Consensus       159 kpqvllfdeptaaldpeitaqvv~iikel-----~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a  225 (242)
T COG4161         159 EPQVLLFDEPTAALDPEITAQIVSIIKEL-----AETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA  225 (242)
T ss_pred             CCcEEeecCcccccCHHHHHHHHHHHHHH-----HhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecch
Confidence            36999999999999999999999999998     45799999999999999999999999999999988864

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=100.00  E-value=1.4e-34  Score=289.35  Aligned_cols=201  Identities=21%  Similarity=0.347  Sum_probs=161.1

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      ..++++++.|+..+ ..++++++||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++.. .
T Consensus        12 l~~~~l~~~~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~~~~G~i~~~g~~~~~~~   82 (226)
T cd03248          12 VKFQNVTFAYPTRP-DTLVLQDVSFTLHPGEVTALVGPSGS--GKSTV------VALLENFYQPQGGQVLLDGKPISQYE   82 (226)
T ss_pred             EEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCcCCCCcEEEECCCchHHcC
Confidence            45899999986422 24699999999988      999999  56665      579999999999999999998743 2


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHH-----HHHHHHHHHHc--CCCcccCCccccCChHHHhhh
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLA-----QLEISNMIGDL--GIPHKRTSLANTLSGGMQRKL  195 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qr~  195 (601)
                      ....++.++|+||++.+|+ .|+.||+.++....  ...+.     +..+.++++.+  |+....++++.+||||||||+
T Consensus        83 ~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv  159 (226)
T cd03248          83 HKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSC--SFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRV  159 (226)
T ss_pred             HHHHHhhEEEEecccHHHh-hhHHHHhccccCCC--CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHH
Confidence            3345678999999998875 69999998754322  11111     12356788888  888888999999999999999


Q ss_pred             hchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhcc
Q psy7365         196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSF  275 (601)
Q Consensus       196 ~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  275 (601)
                      ++||++                                      +.+                                 
T Consensus       160 ~laral--------------------------------------~~~---------------------------------  168 (226)
T cd03248         160 AIARAL--------------------------------------IRN---------------------------------  168 (226)
T ss_pred             HHHHHH--------------------------------------hcC---------------------------------
Confidence            754432                                      222                                 


Q ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcc
Q psy7365         276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL  342 (601)
Q Consensus       276 ~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkI  342 (601)
                        |+++||||||+|||+.++..+++.|+++.      ++.|+|++||+++++.. ||++++|.+|++
T Consensus       169 --p~llllDEPt~~LD~~~~~~l~~~l~~~~------~~~tii~~sh~~~~~~~-~d~i~~l~~g~i  226 (226)
T cd03248         169 --PQVLILDEATSALDAESEQQVQQALYDWP------ERRTVLVIAHRLSTVER-ADQILVLDGGRI  226 (226)
T ss_pred             --CCEEEEeCCcccCCHHHHHHHHHHHHHHc------CCCEEEEEECCHHHHHh-CCEEEEecCCcC
Confidence              58999999999999999999999999872      25899999999999965 999999999864

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=3.9e-34  Score=318.60  Aligned_cols=206  Identities=25%  Similarity=0.330  Sum_probs=168.7

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT  121 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~  121 (601)
                      ++..+++|++         ++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++..
T Consensus       256 ~~l~~~~l~~---------~~l~~vsl~i~~Ge~~~liG~NGs--GKSTL------l~~l~G~~~p~~G~I~~~g~~i~~  318 (501)
T PRK10762        256 VRLKVDNLSG---------PGVNDVSFTLRKGEILGVSGLMGA--GRTEL------MKVLYGALPRTSGYVTLDGHEVVT  318 (501)
T ss_pred             cEEEEeCccc---------CCcccceEEEcCCcEEEEecCCCC--CHHHH------HHHHhCCCCCCceEEEECCEECCC
Confidence            4556888874         269999999988      999999  56665      579999999999999999998753


Q ss_pred             c--hHHhcccEEEEccCC---CCCCCCCHHHHHHHhHhh-c----C-CChHHHHHHHHHHHHHcCCC-cccCCccccCCh
Q psy7365         122 D--MTTIRRSLGVCPQYN---ALFDKLTVEEHMWFYSQL-K----Q-VPKDLAQLEISNMIGDLGIP-HKRTSLANTLSG  189 (601)
Q Consensus       122 ~--~~~~~~~ig~v~Q~~---~~~~~~tv~e~l~~~~~~-~----~-~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSg  189 (601)
                      .  ....++++||+||++   .+++.+||.||+.++... .    + .+..+.+.++.++++.+|+. +..++++.+|||
T Consensus       319 ~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg  398 (501)
T PRK10762        319 RSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSG  398 (501)
T ss_pred             CCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCH
Confidence            2  233566899999997   488899999999875321 1    1 23334456788999999995 678999999999


Q ss_pred             HHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHH
Q psy7365         190 GMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTV  269 (601)
Q Consensus       190 G~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~  269 (601)
                      |||||+++||++                                      +.+                           
T Consensus       399 Gekqrv~lA~al--------------------------------------~~~---------------------------  413 (501)
T PRK10762        399 GNQQKVAIARGL--------------------------------------MTR---------------------------  413 (501)
T ss_pred             HHHHHHHHHHHH--------------------------------------hhC---------------------------
Confidence            999999854432                                      222                           


Q ss_pred             HHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         270 LFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       270 ~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                              |++|||||||+|||+.+++.++++|+++.     .+|.|||++|||++++..+||++++|.+|+++..++.
T Consensus       414 --------p~lllLDEPt~~LD~~~~~~l~~~l~~~~-----~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~  479 (501)
T PRK10762        414 --------PKVLILDEPTRGVDVGAKKEIYQLINQFK-----AEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTR  479 (501)
T ss_pred             --------CCEEEEcCCCCCCCHhHHHHHHHHHHHHH-----HCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecc
Confidence                    58999999999999999999999999973     3589999999999999999999999999998766543

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.2e-34  Score=290.35  Aligned_cols=209  Identities=23%  Similarity=0.324  Sum_probs=171.0

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCC-----CCeeEEEEcc
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLP-----VSSGTAKIYD  116 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~-----~~~G~v~~~g  116 (601)
                      +...+++|++.|++    ..+++|+||++.+      +||||+  |||||      .++|+|+++     |++|+|.++|
T Consensus         2 ~~l~~~~v~~~~~~----~~~l~~~s~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~~~~~~~~~G~v~~~g   69 (250)
T PRK14266          2 YRIEVENLNTYFDD----AHILKNVNLDIPKNSVTALIGPSGC--GKSTF------IRTLNRMNDLIPGFRHEGHIYLDG   69 (250)
T ss_pred             cEEEEEeEEEEeCC----eEEEeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHHhhhccCCCCCCccEEEECC
Confidence            34558999999863    4599999999988      999999  56665      679999864     4899999999


Q ss_pred             ccCCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCC-ChHHHHHHHHHHHHHcCCC----cccCCccccCC
Q psy7365         117 HDIRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIGDLGIP----HKRTSLANTLS  188 (601)
Q Consensus       117 ~~~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LS  188 (601)
                      .++..   .....++.+||+||++.+|+. |+.||+.++....+. +.+..++++.++++.+|+.    +..++++.+||
T Consensus        70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS  148 (250)
T PRK14266         70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLS  148 (250)
T ss_pred             EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCC
Confidence            98753   234557789999999998875 999999886554443 2344567788999999984    34688899999


Q ss_pred             hHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHH
Q psy7365         189 GGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVT  268 (601)
Q Consensus       189 gG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~  268 (601)
                      ||||||+++||+|                                      +.+                          
T Consensus       149 ~Gq~qrv~laral--------------------------------------~~~--------------------------  164 (250)
T PRK14266        149 GGQQQRLCIARTI--------------------------------------AVS--------------------------  164 (250)
T ss_pred             HHHHHHHHHHHHH--------------------------------------HcC--------------------------
Confidence            9999999865432                                      222                          


Q ss_pred             HHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         269 VLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       269 ~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                               |++++|||||+|||+.++..++++|+++.      +|.|||++||+++++...||++++|.+|++...+++
T Consensus       165 ---------p~llllDEP~~gLD~~~~~~l~~~l~~~~------~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~  229 (250)
T PRK14266        165 ---------PEVILMDEPCSALDPISTTKIEDLIHKLK------EDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLT  229 (250)
T ss_pred             ---------CCEEEEcCCCccCCHHHHHHHHHHHHHHh------cCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCH
Confidence                     58999999999999999999999999872      378999999999999999999999999999877654

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=100.00  E-value=3.4e-34  Score=288.77  Aligned_cols=204  Identities=26%  Similarity=0.361  Sum_probs=159.7

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-chH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DMT  124 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~~  124 (601)
                      ++++++.|++. ...++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. ...
T Consensus         3 i~~l~~~~~~~-~~~~~l~~i~~~i~~Ge~~~l~G~nGs--GKSTL------l~~i~G~~~~~~G~i~~~g~~~~~~~~~   73 (238)
T cd03249           3 FKNVSFRYPSR-PDVPILKGLSLTIPPGKTVALVGSSGC--GKSTV------VSLLERFYDPTSGEILLDGVDIRDLNLR   73 (238)
T ss_pred             EEEEEEecCCC-CCccceeceEEEecCCCEEEEEeCCCC--CHHHH------HHHHhccCCCCCCEEEECCEehhhcCHH
Confidence            78999998542 124689999999988      999999  56665      579999999999999999988743 233


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHH-----HHHHHHHHc--CCCcccCCccccCChHHHhhhhc
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL-----EISNMIGDL--GIPHKRTSLANTLSGGMQRKLDN  197 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qr~~~  197 (601)
                      ..++.+||+||++.+|+ .||.||+.++....  ..++...     .+.+.++.+  ++....++.+.+||||||||+++
T Consensus        74 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l  150 (238)
T cd03249          74 WLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAI  150 (238)
T ss_pred             HHHhhEEEECCchhhhh-hhHHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHH
Confidence            45667999999998876 69999998754322  1122111     123334444  56666788899999999999975


Q ss_pred             hhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCC
Q psy7365         198 VKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVP  277 (601)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  277 (601)
                      |+++                                      +.                                   +
T Consensus       151 a~al--------------------------------------~~-----------------------------------~  157 (238)
T cd03249         151 ARAL--------------------------------------LR-----------------------------------N  157 (238)
T ss_pred             HHHH--------------------------------------hc-----------------------------------C
Confidence            4432                                      22                                   2


Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                      |+++||||||+|||+.+++.+++.|+++     + +|+|||++||+++++. .||++++|.+|+++..++
T Consensus       158 p~llllDEP~~gLD~~~~~~l~~~l~~~-----~-~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~  220 (238)
T cd03249         158 PKILLLDEATSALDAESEKLVQEALDRA-----M-KGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGT  220 (238)
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHh-----c-CCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCC
Confidence            5899999999999999999999999986     3 5899999999999997 899999999999876654

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.4e-34  Score=290.93  Aligned_cols=209  Identities=22%  Similarity=0.318  Sum_probs=170.0

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCC-----CeeEEEEcc
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPV-----SSGTAKIYD  116 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~-----~~G~v~~~g  116 (601)
                      +.+.+++|+++|+.    .++++|+||++.+      +|||||  |||||      .++|+|+++|     ++|+|+++|
T Consensus        15 ~~l~~~~l~~~~~~----~~vl~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~~~~~~~~sG~i~~~g   82 (265)
T PRK14252         15 QKSEVNKLNFYYGG----YQALKNINMMVHEKQVTALIGPSGC--GKSTF------LRCFNRMHDLYPGNHYEGEIILHP   82 (265)
T ss_pred             ceEEEEEEEEEECC----eeeeeeeEEEEcCCcEEEEECCCCC--CHHHH------HHHHhcccCCCCCCCcccEEEEcC
Confidence            34568999999864    3599999999988      999999  56665      5799999975     799999999


Q ss_pred             ccCCC-----chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChH-HHHHHHHHHHHHcCCC----cccCCcccc
Q psy7365         117 HDIRT-----DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD-LAQLEISNMIGDLGIP----HKRTSLANT  186 (601)
Q Consensus       117 ~~~~~-----~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~~gl~----~~~~~~~~~  186 (601)
                      .++..     .....++.+||+||++.+|+. |+.||+.++....+.+.. ..++++.++++.+++.    +..++.+.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~  161 (265)
T PRK14252         83 DNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFN  161 (265)
T ss_pred             ccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCccc
Confidence            87631     223456789999999998876 999999987655554432 2346678888888874    456888999


Q ss_pred             CChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHH
Q psy7365         187 LSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVA  266 (601)
Q Consensus       187 LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a  266 (601)
                      ||||||||+++||++                                      +.+                        
T Consensus       162 LS~G~~qrv~laral--------------------------------------~~~------------------------  179 (265)
T PRK14252        162 LSGGQQQRLCIARAL--------------------------------------ATD------------------------  179 (265)
T ss_pred             CCHHHHHHHHHHHHH--------------------------------------HcC------------------------
Confidence            999999999754432                                      222                        


Q ss_pred             HHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccccc
Q psy7365         267 VTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  346 (601)
Q Consensus       267 ~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G  346 (601)
                                 |+++||||||+|||+.++..+++.|+++.      .+.|+|++||+++++..+||++++|.+|+++..+
T Consensus       180 -----------p~llllDEPt~gLD~~~~~~l~~~l~~l~------~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g  242 (265)
T PRK14252        180 -----------PEILLFDEPTSALDPIATASIEELISDLK------NKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG  242 (265)
T ss_pred             -----------CCEEEEeCCCccCCHHHHHHHHHHHHHHH------hCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence                       58999999999999999999999999872      2589999999999999999999999999998766


Q ss_pred             Cc
Q psy7365         347 SS  348 (601)
Q Consensus       347 ~~  348 (601)
                      +.
T Consensus       243 ~~  244 (265)
T PRK14252        243 AT  244 (265)
T ss_pred             CH
Confidence            43

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.7e-34  Score=300.31  Aligned_cols=198  Identities=23%  Similarity=0.367  Sum_probs=179.0

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-cccccccccCCCCcccCCCCCHHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-APQKSYIGYCPQFDALNDRLTPREHL  393 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-~~~~~~ig~v~Q~~~l~~~lTv~E~L  393 (601)
                      |++++-.+-++.+++++...   ||++++++       .+.|+.++.+.++.. .+.+|.|++|||+..+||+|||+||+
T Consensus        20 ~~i~l~i~~Gef~vllGPSG---cGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Ni   96 (338)
T COG3839          20 KDVNLDIEDGEFVVLLGPSG---CGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENI   96 (338)
T ss_pred             ecceEEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHh
Confidence            99999999999999998632   67776553       345556566666655 44578899999999999999999999


Q ss_pred             HHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHH
Q psy7365         394 EFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCI  473 (601)
Q Consensus       394 ~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL  473 (601)
                      .|..++.+.++++.+++++++.+.++|+++++++|.+|||||||||++||||+.+|++++||||+|.||+..|..+...|
T Consensus        97 af~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei  176 (338)
T COG3839          97 AFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEI  176 (338)
T ss_pred             hhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHhC
Q psy7365         474 ERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYG  522 (601)
Q Consensus       474 ~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~~  522 (601)
                      +++.++ |.|+|++|||-.|+..++|||++|++|+|...|+|.++.++..
T Consensus       177 ~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~  226 (338)
T COG3839         177 KKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA  226 (338)
T ss_pred             HHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence            998766 9999999999999999999999999999999999999976543

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.3e-34  Score=288.27  Aligned_cols=196  Identities=23%  Similarity=0.327  Sum_probs=172.0

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccC----CcccccccccCCCCcc-cCCCCCH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMK----SAPQKSYIGYCPQFDA-LNDRLTP  389 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~----~~~~~~~ig~v~Q~~~-l~~~lTv  389 (601)
                      +++++...-++++++++...   +|+++++       ++..+..+..+.+..    ....++++|||+|+|. .+..-||
T Consensus        21 ~~v~~~i~~Ge~~~i~G~nG---sGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV   97 (235)
T COG1122          21 KDVSLEIEKGERVLLIGPNG---SGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTV   97 (235)
T ss_pred             eeeEEEECCCCEEEEECCCC---CCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcH
Confidence            89999999999999998532   5665543       344455444444432    2345789999999985 6667799


Q ss_pred             HHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHH
Q psy7365         390 REHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFL  469 (601)
Q Consensus       390 ~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i  469 (601)
                      .+.+.|.....+.+.++.++++.++++.+++.++++++|.+|||||||||+||.+|+.+|++|+|||||+||||.+++++
T Consensus        98 ~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l  177 (235)
T COG1122          98 EDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRREL  177 (235)
T ss_pred             HHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHH
Confidence            99999999999999888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         470 WTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       470 ~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      +++++++.++ |+|||++|||++++..+|||+++|++|+++.+|+|.++.+.
T Consensus       178 ~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~  229 (235)
T COG1122         178 LELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND  229 (235)
T ss_pred             HHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence            9999999887 79999999999999999999999999999999999988764

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.5e-34  Score=284.91  Aligned_cols=180  Identities=24%  Similarity=0.318  Sum_probs=157.2

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcccccccccCCCCcccCCCCCHHHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLE  394 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~~~~~ig~v~Q~~~l~~~lTv~E~L~  394 (601)
                      .++++...-++.+.+++...   ||++++++       ++.|.....|..+  ......+|||||++.++|++||+||+.
T Consensus        20 ~~i~L~v~~GEfvsilGpSG---cGKSTLLriiAGL~~p~~G~V~~~g~~v--~~p~~~~~~vFQ~~~LlPW~Tv~~NV~   94 (248)
T COG1116          20 EDINLSVEKGEFVAILGPSG---CGKSTLLRLIAGLEKPTSGEVLLDGRPV--TGPGPDIGYVFQEDALLPWLTVLDNVA   94 (248)
T ss_pred             ccceeEECCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCceEEECCccc--CCCCCCEEEEeccCcccchhhHHhhhe
Confidence            89999999999999998633   67776553       3334433333332  234567899999999999999999999


Q ss_pred             HhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q psy7365         395 FYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE  474 (601)
Q Consensus       395 ~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~  474 (601)
                      |.....+.++.+.+++++++|+.+||.++.+++|++|||||||||+|||||+.+|++|+||||++.||..+|..+.+.+.
T Consensus        95 l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~  174 (248)
T COG1116          95 LGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELL  174 (248)
T ss_pred             ehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHH
Confidence            99888887777778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHh-CCcEEEEEccChhHHHhhCCEEEEEeCC
Q psy7365         475 RAVS-EGRCVILTSHNMEECEALCTKLTIMVNG  506 (601)
Q Consensus       475 ~l~~-~G~tVllsTHdl~e~~~l~drv~iL~~G  506 (601)
                      ++.+ .++||+++|||++|+-.++|||++|.++
T Consensus       175 ~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~  207 (248)
T COG1116         175 RLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR  207 (248)
T ss_pred             HHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence            8754 5999999999999999999999999884

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=4e-34  Score=272.82  Aligned_cols=213  Identities=21%  Similarity=0.330  Sum_probs=181.7

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEcc-ccCC
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYD-HDIR  120 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g-~~~~  120 (601)
                      .+..+++|+..||++.    ||+|+||++.+      +|||||  ||||+      +.+|+|-.+|+.|+|.++| .++.
T Consensus         4 ~iL~~~~vsVsF~GF~----Aln~ls~~v~~Gelr~lIGpNGA--GKTT~------mD~ItGKtrp~~G~v~f~g~~dl~   71 (249)
T COG4674           4 IILYLDGVSVSFGGFK----ALNDLSFSVDPGELRVLIGPNGA--GKTTL------MDVITGKTRPQEGEVLFDGDTDLT   71 (249)
T ss_pred             ceEEEeceEEEEccee----eeeeeEEEecCCeEEEEECCCCC--Cceee------eeeecccCCCCcceEEEcCchhhc
Confidence            4455899999999887    99999999988      999999  78887      7899999999999999999 7886


Q ss_pred             C--chHHhcccEEEEccCCCCCCCCCHHHHHHHhHh--------hcCCChHHHHHHHHHHHHHcCCCcccCCccccCChH
Q psy7365         121 T--DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ--------LKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGG  190 (601)
Q Consensus       121 ~--~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~--------~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG  190 (601)
                      .  .....|.+||.-||.|.+|..+||+||+.....        ++.-...+-+.|++++|+..||.+.+++.+..||.|
T Consensus        72 ~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHG  151 (249)
T COG4674          72 KLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHG  151 (249)
T ss_pred             cCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccc
Confidence            4  344467799999999999999999999976542        121223445678999999999999999999999999


Q ss_pred             HHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHH
Q psy7365         191 MQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVL  270 (601)
Q Consensus       191 ~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~  270 (601)
                      |||++.|..                                      .+++                             
T Consensus       152 qKQwLEIGM--------------------------------------ll~Q-----------------------------  164 (249)
T COG4674         152 QKQWLEIGM--------------------------------------LLAQ-----------------------------  164 (249)
T ss_pred             hhhhhhhhe--------------------------------------eecc-----------------------------
Confidence            999998532                                      1223                             


Q ss_pred             HhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         271 FAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       271 ~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                            .|++|+||||++|+...+....-++|+.+.      ...+|++++|||.|+..++++|-+|..|.+.+.|+-..
T Consensus       165 ------~P~lLLlDEPvAGMTd~Et~~taeLl~~la------~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~  232 (249)
T COG4674         165 ------DPKLLLLDEPVAGMTDAETEKTAELLKSLA------GKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDE  232 (249)
T ss_pred             ------CCcEEEecCccCCCcHHHHHHHHHHHHHHh------cCceEEEEeccHHHHHHhhheeEEEeccceeecccHHH
Confidence                  369999999999999999999999999983      56899999999999999999999999999999886543


Q ss_pred             c
Q psy7365         351 L  351 (601)
Q Consensus       351 L  351 (601)
                      .
T Consensus       233 v  233 (249)
T COG4674         233 V  233 (249)
T ss_pred             h
Confidence            3

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.5e-34  Score=316.77  Aligned_cols=206  Identities=20%  Similarity=0.289  Sum_probs=167.8

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-  121 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-  121 (601)
                      +..+++++..        .+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|+++.. 
T Consensus       257 ~l~~~~~~~~--------~~l~~isl~i~~Ge~~~iiG~NGs--GKSTL------lk~l~G~~~p~~G~i~~~g~~~~~~  320 (501)
T PRK11288        257 RLRLDGLKGP--------GLREPISFSVRAGEIVGLFGLVGA--GRSEL------MKLLYGATRRTAGQVYLDGKPIDIR  320 (501)
T ss_pred             EEEEeccccC--------CcccceeEEEeCCcEEEEEcCCCC--CHHHH------HHHHcCCCcCCCceEEECCEECCCC
Confidence            4457777632        389999999988      999999  56665      679999999999999999998753 


Q ss_pred             -chHHhcccEEEEccCCC---CCCCCCHHHHHHHhHhhc----C--CChHHHHHHHHHHHHHcCCC-cccCCccccCChH
Q psy7365         122 -DMTTIRRSLGVCPQYNA---LFDKLTVEEHMWFYSQLK----Q--VPKDLAQLEISNMIGDLGIP-HKRTSLANTLSGG  190 (601)
Q Consensus       122 -~~~~~~~~ig~v~Q~~~---~~~~~tv~e~l~~~~~~~----~--~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG  190 (601)
                       .....++.+||+||++.   +|+.+|+.||+.++....    +  .+....++++.++++.+|+. +..++++.+||||
T Consensus       321 ~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG  400 (501)
T PRK11288        321 SPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGG  400 (501)
T ss_pred             CHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHH
Confidence             23345678999999973   899999999998754321    1  12233345688999999994 6789999999999


Q ss_pred             HHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHH
Q psy7365         191 MQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVL  270 (601)
Q Consensus       191 ~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~  270 (601)
                      |||||++||++                                      +.                             
T Consensus       401 q~qrl~la~al--------------------------------------~~-----------------------------  413 (501)
T PRK11288        401 NQQKAILGRWL--------------------------------------SE-----------------------------  413 (501)
T ss_pred             HHHHHHHHHHH--------------------------------------cc-----------------------------
Confidence            99999754432                                      22                             


Q ss_pred             HhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         271 FAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       271 ~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                            +|++|||||||+|||+.+++.++++|.++.     ..|.|||++|||++++..+||++++|.+|+++..++.
T Consensus       414 ------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-----~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~  480 (501)
T PRK11288        414 ------DMKVILLDEPTRGIDVGAKHEIYNVIYELA-----AQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAR  480 (501)
T ss_pred             ------CCCEEEEcCCCCCCCHhHHHHHHHHHHHHH-----hCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcc
Confidence                  258999999999999999999999999883     3589999999999999999999999999998876644

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=100.00  E-value=6.8e-34  Score=284.83  Aligned_cols=203  Identities=27%  Similarity=0.363  Sum_probs=158.5

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-ch
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DM  123 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~  123 (601)
                      .++++++.|++   ...+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. +.
T Consensus         4 ~~~~l~~~~~~---~~~~l~~isl~i~~G~~~~i~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~g~~~~~~~~   72 (229)
T cd03254           4 EFENVNFSYDE---KKPVLKDINFSIKPGETVAIVGPTGA--GKTTL------INLLMRFYDPQKGQILIDGIDIRDISR   72 (229)
T ss_pred             EEEEEEEecCC---CCccccceEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCcCCCCCEEEECCEeHHHcCH
Confidence            37899999852   23489999999988      999999  56665      679999999999999999988753 33


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHH-----HHHHHHHHc--CCCcccCCccccCChHHHhhhh
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL-----EISNMIGDL--GIPHKRTSLANTLSGGMQRKLD  196 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qr~~  196 (601)
                      ...++.+||+||++.+|+. |+.||+.++....  .......     .+.+.++.+  |+....++.+.+||||||||++
T Consensus        73 ~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~  149 (229)
T cd03254          73 KSLRSMIGVVLQDTFLFSG-TIMENIRLGRPNA--TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLA  149 (229)
T ss_pred             HHHhhhEEEecCCchhhhh-HHHHHHhccCCCC--CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHH
Confidence            4457789999999988875 9999998764321  1111111     123344444  5666667788999999999998


Q ss_pred             chhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccC
Q psy7365         197 NVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFV  276 (601)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  276 (601)
                      +||+|+                                      .+                                  
T Consensus       150 la~al~--------------------------------------~~----------------------------------  157 (229)
T cd03254         150 IARAML--------------------------------------RD----------------------------------  157 (229)
T ss_pred             HHHHHh--------------------------------------cC----------------------------------
Confidence            654332                                      22                                  


Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                       |+++||||||+|||+.++..+++.|+++     + +|+|||++||+++++. .||++++|.+|++...++
T Consensus       158 -p~llllDEP~~~LD~~~~~~l~~~l~~~-----~-~~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~~~~  220 (229)
T cd03254         158 -PKILILDEATSNIDTETEKLIQEALEKL-----M-KGRTSIIIAHRLSTIK-NADKILVLDDGKIIEEGT  220 (229)
T ss_pred             -CCEEEEeCccccCCHHHHHHHHHHHHHh-----c-CCCEEEEEecCHHHHh-hCCEEEEEeCCeEEEeCC
Confidence             5899999999999999999999999987     2 4899999999999986 599999999999876553

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=6.4e-34  Score=281.49  Aligned_cols=192  Identities=25%  Similarity=0.286  Sum_probs=159.5

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM  123 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~  123 (601)
                      ..+++|++.|++    .++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|+++|.++... 
T Consensus         3 l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~g~~~~~~-   69 (207)
T PRK13539          3 LEGEDLACVRGG----RVLFSGLSFTLAAGEALVLTGPNGS--GKTTL------LRLIAGLLPPAAGTIKLDGGDIDDP-   69 (207)
T ss_pred             EEEEeEEEEECC----eEEEeceEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCceEEECCEeCcch-
Confidence            458999999864    3599999999988      999999  56655      6799999999999999999886422 


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcc
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFN  203 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~  203 (601)
                      . .++.++|++|.+.+++.+|+.||+.+.....+..    .+++.++++.+|+.+..++++++||||||||+++||++  
T Consensus        70 ~-~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al--  142 (207)
T PRK13539         70 D-VAEACHYLGHRNAMKPALTVAENLEFWAAFLGGE----ELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLL--  142 (207)
T ss_pred             h-hHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHH--
Confidence            2 5678999999988888999999998866544422    23578899999999888999999999999999854432  


Q ss_pred             hhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEE
Q psy7365         204 NKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVIL  283 (601)
Q Consensus       204 ~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liL  283 (601)
                                                          +.+                                   |+++||
T Consensus       143 ------------------------------------~~~-----------------------------------p~llll  151 (207)
T PRK13539        143 ------------------------------------VSN-----------------------------------RPIWIL  151 (207)
T ss_pred             ------------------------------------hcC-----------------------------------CCEEEE
Confidence                                                222                                   589999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecC
Q psy7365         284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA  339 (601)
Q Consensus       284 DEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~  339 (601)
                      ||||+|||+.++..+++.|+++.     .+|+|+|++||+.+++..  |+++-+..
T Consensus       152 DEPt~~LD~~~~~~l~~~l~~~~-----~~~~tiii~sH~~~~~~~--~~~~~~~~  200 (207)
T PRK13539        152 DEPTAALDAAAVALFAELIRAHL-----AQGGIVIAATHIPLGLPG--ARELDLGP  200 (207)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHH-----HCCCEEEEEeCCchhhcc--CcEEeecC
Confidence            99999999999999999999873     358999999999999886  88877743

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=100.00  E-value=6.4e-34  Score=283.53  Aligned_cols=198  Identities=22%  Similarity=0.311  Sum_probs=157.8

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-ch
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DM  123 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~  123 (601)
                      .++++++.|+.  ...++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++.. +.
T Consensus         4 ~~~~l~~~~~~--~~~~~l~~i~~~i~~Ge~~~i~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~g~~~~~~~~   73 (221)
T cd03244           4 EFKNVSLRYRP--NLPPVLKNISFSIKPGEKVGIVGRTGS--GKSSL------LLALFRLVELSSGSILIDGVDISKIGL   73 (221)
T ss_pred             EEEEEEEecCC--CCcccccceEEEECCCCEEEEECCCCC--CHHHH------HHHHHcCCCCCCCEEEECCEEhHhCCH
Confidence            37899999853  234699999999988      999999  56665      579999999999999999998753 33


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCccccCChHHH
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHK-----------RTSLANTLSGGMQ  192 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~  192 (601)
                      ...++.+||+||++.+|+ .|+.||+.++..   ..    .+++.++++.+++.+.           .++++.+|||||+
T Consensus        74 ~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~  145 (221)
T cd03244          74 HDLRSRISIIPQDPVLFS-GTIRSNLDPFGE---YS----DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQR  145 (221)
T ss_pred             HHHhhhEEEECCCCcccc-chHHHHhCcCCC---CC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHH
Confidence            455778999999998775 599999975421   22    2344555666665543           3578999999999


Q ss_pred             hhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHh
Q psy7365         193 RKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFA  272 (601)
Q Consensus       193 qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  272 (601)
                      ||+++||++                                      +.+                              
T Consensus       146 qr~~laral--------------------------------------~~~------------------------------  157 (221)
T cd03244         146 QLLCLARAL--------------------------------------LRK------------------------------  157 (221)
T ss_pred             HHHHHHHHH--------------------------------------hcC------------------------------
Confidence            999864432                                      222                              


Q ss_pred             hccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccccc
Q psy7365         273 MSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  346 (601)
Q Consensus       273 ~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G  346 (601)
                           |+++||||||+|||+.++..+++.|+++.      ++.|+|++||+.+++.. ||++++|.+|++...+
T Consensus       158 -----p~llllDEP~~~LD~~~~~~l~~~l~~~~------~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~  219 (221)
T cd03244         158 -----SKILVLDEATASVDPETDALIQKTIREAF------KDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFD  219 (221)
T ss_pred             -----CCEEEEeCccccCCHHHHHHHHHHHHHhc------CCCEEEEEeCCHHHHhh-CCEEEEEECCeEEecC
Confidence                 58999999999999999999999999872      36899999999999875 9999999999987655

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=100.00  E-value=1.8e-33  Score=285.15  Aligned_cols=208  Identities=21%  Similarity=0.259  Sum_probs=163.7

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCC--CCCeeEEEEccccCCC-
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGML--PVSSGTAKIYDHDIRT-  121 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~--~~~~G~v~~~g~~~~~-  121 (601)
                      .++||++.|+.    .++++|+||++.+      +|||||  |||||      .++|+|++  +|++|+|.++|.++.. 
T Consensus         3 ~~~nl~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~~~~~~G~i~~~g~~~~~~   70 (248)
T PRK09580          3 SIKDLHVSVED----KAILRGLNLEVRPGEVHAIMGPNGS--GKSTL------SATLAGREDYEVTGGTVEFKGKDLLEL   70 (248)
T ss_pred             EEEEEEEEeCC----eeeeecceeEEcCCCEEEEECCCCC--CHHHH------HHHHcCCccCCCCceEEEECCCccccC
Confidence            47899999863    3599999999987      999999  56665      57999995  6999999999998753 


Q ss_pred             chH-HhcccEEEEccCCCCCCCCCHHHHHHHhHhhc---C----CChHHHHHHHHHHHHHcCCC-cccCCccc-cCChHH
Q psy7365         122 DMT-TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK---Q----VPKDLAQLEISNMIGDLGIP-HKRTSLAN-TLSGGM  191 (601)
Q Consensus       122 ~~~-~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~---~----~~~~~~~~~~~~~l~~~gl~-~~~~~~~~-~LSgG~  191 (601)
                      +.. ..++.++|+||++.+++.+++.+++.+.....   .    ........++.++++.+++. +..++.+. +|||||
T Consensus        71 ~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~  150 (248)
T PRK09580         71 SPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGE  150 (248)
T ss_pred             CHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHH
Confidence            222 23457999999999888888777765432211   1    11223455678899999995 55677775 899999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||+++||||                                      +.+                             
T Consensus       151 ~qrv~laral--------------------------------------~~~-----------------------------  163 (248)
T PRK09580        151 KKRNDILQMA--------------------------------------VLE-----------------------------  163 (248)
T ss_pred             HHHHHHHHHH--------------------------------------HcC-----------------------------
Confidence            9999865433                                      233                             


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhc-CCEEEEecCCccccccCc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLL-GDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l-~Drv~vL~~GkIv~~G~~  348 (601)
                            |+++||||||+|||+.++..+.+.|+++.     ..|+|||++||+++++... ||++++|.+|+++..++.
T Consensus       164 ------p~illLDEPt~~LD~~~~~~l~~~l~~l~-----~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~  230 (248)
T PRK09580        164 ------PELCILDESDSGLDIDALKIVADGVNSLR-----DGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF  230 (248)
T ss_pred             ------CCEEEEeCCCccCCHHHHHHHHHHHHHHH-----hCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCH
Confidence                  58999999999999999999999998873     3588999999999999887 899999999998876643

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=2.3e-33  Score=287.98  Aligned_cols=186  Identities=19%  Similarity=0.208  Sum_probs=158.5

Q ss_pred             CccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCC
Q psy7365          64 IDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYN  137 (601)
Q Consensus        64 ~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~  137 (601)
                      ....+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.            +++++|++
T Consensus        35 ~~~~il~~is~~i~~Ge~~~liG~NGs--GKSTL------lk~L~Gl~~p~~G~I~~~g~------------~~~~~~~~   94 (264)
T PRK13546         35 KTFFALDDISLKAYEGDVIGLVGINGS--GKSTL------SNIIGGSLSPTVGKVDRNGE------------VSVIAISA   94 (264)
T ss_pred             CceEEEeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCcCCCceEEEECCE------------EeEEeccc
Confidence            345689999999988      999999  56665      57999999999999999984            46778888


Q ss_pred             CCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhh
Q psy7365         138 ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAA  217 (601)
Q Consensus       138 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~  217 (601)
                      .+++.+|+.||+.++....+.+.++....+.++++.+++.+..++++.+|||||+||+++|++|                
T Consensus        95 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral----------------  158 (264)
T PRK13546         95 GLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINI----------------  158 (264)
T ss_pred             CCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHH----------------
Confidence            7888899999998876655666666666778899999999999999999999999999754432                


Q ss_pred             hhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHH
Q psy7365         218 NNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRS  297 (601)
Q Consensus       218 ~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~  297 (601)
                                            +.+                                   |++|||||||+|||+.++..
T Consensus       159 ----------------------~~~-----------------------------------p~iLlLDEPt~gLD~~~~~~  181 (264)
T PRK13546        159 ----------------------TVN-----------------------------------PDILVIDEALSVGDQTFAQK  181 (264)
T ss_pred             ----------------------hhC-----------------------------------CCEEEEeCccccCCHHHHHH
Confidence                                  222                                   58999999999999999999


Q ss_pred             HHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         298 IWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       298 l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                      +++.|.++.     ..|+|+|++||+++++..+||++++|.+|++...++
T Consensus       182 l~~~L~~~~-----~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~  226 (264)
T PRK13546        182 CLDKIYEFK-----EQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGE  226 (264)
T ss_pred             HHHHHHHHH-----HCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCC
Confidence            999998872     358999999999999999999999999999876553

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=100.00  E-value=1.1e-33  Score=277.67  Aligned_cols=188  Identities=26%  Similarity=0.334  Sum_probs=154.8

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTT  125 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~  125 (601)
                      +++|++.|++    .++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++......
T Consensus         3 ~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~g~~~~~~~~~   70 (198)
T TIGR01189         3 ARNLACSRGE----RMLFEGLSFTLNAGEALQVTGPNGI--GKTTL------LRILAGLLRPDSGEVRWNGTALAEQRDE   70 (198)
T ss_pred             EEEEEEEECC----EEEEeeeeEEEcCCcEEEEECCCCC--CHHHH------HHHHhCCCCCCccEEEECCEEcccchHH
Confidence            6889998864    4599999999988      999999  56665      5799999999999999999987543344


Q ss_pred             hcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchh
Q psy7365         126 IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNK  205 (601)
Q Consensus       126 ~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~  205 (601)
                      .++.++|+||++.+|+.+|+.||+.++....+.  +  +.++.++++.+|+.+..++++.+||||||||+++||+++   
T Consensus        71 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~--~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~---  143 (198)
T TIGR01189        71 PHRNILYLGHLPGLKPELSALENLHFWAAIHGG--A--QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWL---  143 (198)
T ss_pred             hhhheEEeccCcccccCCcHHHHHHHHHHHcCC--c--HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHh---
Confidence            567899999999899899999999987654431  1  346788999999999899999999999999998654332   


Q ss_pred             hHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEec
Q psy7365         206 AWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDE  285 (601)
Q Consensus       206 ~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDE  285 (601)
                                                         .+                                   |+++||||
T Consensus       144 -----------------------------------~~-----------------------------------p~llllDE  153 (198)
T TIGR01189       144 -----------------------------------SR-----------------------------------APLWILDE  153 (198)
T ss_pred             -----------------------------------cC-----------------------------------CCEEEEeC
Confidence                                               22                                   58999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEE
Q psy7365         286 PTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIA  335 (601)
Q Consensus       286 PtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~  335 (601)
                      ||+|||+.++..+++.|.++.     .+|.|+|++||+...+  .|+++.
T Consensus       154 Pt~~LD~~~~~~l~~~l~~~~-----~~~~tii~~sH~~~~~--~~~~~~  196 (198)
T TIGR01189       154 PTTALDKAGVALLAGLLRAHL-----ARGGIVLLTTHQDLGL--VEAREL  196 (198)
T ss_pred             CCcCCCHHHHHHHHHHHHHHH-----hCCCEEEEEEcccccc--cceEEe
Confidence            999999999999999999872     3588999999987444  456654

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=1.2e-33  Score=274.18  Aligned_cols=168  Identities=30%  Similarity=0.423  Sum_probs=142.5

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      +..++++++.|        +++++||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++...
T Consensus         4 ~l~~~~l~~~~--------~l~~vs~~i~~G~~~~i~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~g~~~~~~   67 (182)
T cd03215           4 VLEVRGLSVKG--------AVRDVSFEVRAGEIVGIAGLVGN--GQTEL------AEALFGLRPPASGEITLDGKPVTRR   67 (182)
T ss_pred             EEEEeccEEEe--------eecceEEEEcCCcEEEEECCCCC--CHHHH------HHHHhCCCCCCCceEEECCEECCcc
Confidence            34588999886        89999999988      999999  56665      6799999999999999999988542


Q ss_pred             --hHHhcccEEEEccCC---CCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhc
Q psy7365         123 --MTTIRRSLGVCPQYN---ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDN  197 (601)
Q Consensus       123 --~~~~~~~ig~v~Q~~---~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~  197 (601)
                        ....++.++|+||++   .+++.+|++||+.++..                                ||||||||+++
T Consensus        68 ~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~--------------------------------LS~G~~qrl~l  115 (182)
T cd03215          68 SPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL--------------------------------LSGGNQQKVVL  115 (182)
T ss_pred             CHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh--------------------------------cCHHHHHHHHH
Confidence              234567899999996   47888999999977531                                99999999986


Q ss_pred             hhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCC
Q psy7365         198 VKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVP  277 (601)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  277 (601)
                      ||||+                                      .+                                   
T Consensus       116 a~al~--------------------------------------~~-----------------------------------  122 (182)
T cd03215         116 ARWLA--------------------------------------RD-----------------------------------  122 (182)
T ss_pred             HHHHc--------------------------------------cC-----------------------------------
Confidence            54332                                      22                                   


Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcc
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL  342 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkI  342 (601)
                      |+++||||||+|||+.+++.+++.|+++.     .+|.|+|++||+++++.++||++++|.+|++
T Consensus       123 p~llllDEP~~~LD~~~~~~l~~~l~~~~-----~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i  182 (182)
T cd03215         123 PRVLILDEPTRGVDVGAKAEIYRLIRELA-----DAGKAVLLISSELDELLGLCDRILVMYEGRI  182 (182)
T ss_pred             CCEEEECCCCcCCCHHHHHHHHHHHHHHH-----HCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence            58999999999999999999999999873     3489999999999999999999999999874

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.2e-33  Score=293.76  Aligned_cols=218  Identities=20%  Similarity=0.286  Sum_probs=172.4

Q ss_pred             eecCCCCCCccchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCC---
Q psy7365          36 YVLPQDPASMGAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLP---  106 (601)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~---  106 (601)
                      +..|+++...   ++.+++|++.|+.    ..+++|+||++.+      +|||||  |||||      .++|+|+++   
T Consensus        35 ~~~~~~~~~~---~l~i~nl~~~~~~----~~iL~~is~~i~~Ge~~~IvG~nGs--GKSTL------l~~L~Gl~~~~~   99 (305)
T PRK14264         35 WTDYEFDGDA---KLSVEDLDVYYGD----DHALKGVSMDIPEKSVTALIGPSGC--GKSTF------LRCLNRMNDRIK   99 (305)
T ss_pred             ccccccCCCc---eEEEEEEEEEeCC----eeeeeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhccccccC
Confidence            4555555322   4558999999864    3599999999988      999999  56665      579999986   


Q ss_pred             --CCeeEEEEccccCCC---chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhc------------CCCh-HHHHHHHH
Q psy7365         107 --VSSGTAKIYDHDIRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK------------QVPK-DLAQLEIS  168 (601)
Q Consensus       107 --~~~G~v~~~g~~~~~---~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~------------~~~~-~~~~~~~~  168 (601)
                        |++|+|.++|.++..   .....++.+||+||++.+|+ .||+||+.|+....            +... .....++.
T Consensus       100 ~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (305)
T PRK14264        100 AARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVE  178 (305)
T ss_pred             CCCCceEEEECCEEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHH
Confidence              689999999998753   23345678999999998887 59999999865322            1221 22356688


Q ss_pred             HHHHHcCCC----cccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCc
Q psy7365         169 NMIGDLGIP----HKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPM  244 (601)
Q Consensus       169 ~~l~~~gl~----~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~  244 (601)
                      ++++.+++.    +..++++.+||||||||+++||+|                                      +++  
T Consensus       179 ~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL--------------------------------------~~~--  218 (305)
T PRK14264        179 RSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCL--------------------------------------AVD--  218 (305)
T ss_pred             HHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHH--------------------------------------hcC--
Confidence            999999884    456889999999999999865432                                      233  


Q ss_pred             chhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecch
Q psy7365         245 NLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYM  324 (601)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl  324 (601)
                                                       |++|||||||+|||+.++..++++|+++.     . +.|+|++||++
T Consensus       219 ---------------------------------p~lLLLDEPtsgLD~~~~~~l~~~L~~~~-----~-~~tiiivtH~~  259 (305)
T PRK14264        219 ---------------------------------PEVILMDEPASALDPIATSKIEDLIEELA-----E-EYTVVVVTHNM  259 (305)
T ss_pred             ---------------------------------CCEEEEeCCcccCCHHHHHHHHHHHHHHh-----c-CCEEEEEEcCH
Confidence                                             58999999999999999999999999872     2 47999999999


Q ss_pred             hHHHhcCCEE-EEecCCccccccCc
Q psy7365         325 DEADLLGDRI-AIIAAGKLQCCGSS  348 (601)
Q Consensus       325 ~~~~~l~Drv-~vL~~GkIv~~G~~  348 (601)
                      +++..+||++ ++|.+|+++..+..
T Consensus       260 ~~i~~~~d~i~~~l~~G~i~~~g~~  284 (305)
T PRK14264        260 QQAARISDQTAVFLTGGELVEYDDT  284 (305)
T ss_pred             HHHHHhcCEEEEEecCCEEEEeCCH
Confidence            9999999997 56799999877653

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.4e-34  Score=275.26  Aligned_cols=215  Identities=24%  Similarity=0.285  Sum_probs=181.0

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-ch
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DM  123 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~  123 (601)
                      ..+||++...+    +..++|+||+..+      +||||+  |||||      .|.|+|.+.|++|++.++|.++.. +.
T Consensus         3 ~a~nls~~~~G----r~ll~~vsl~~~pGev~ailGPNGA--GKSTl------Lk~LsGel~p~~G~v~~~g~~l~~~~~   70 (259)
T COG4559           3 RAENLSYSLAG----RRLLDGVSLDLRPGEVLAILGPNGA--GKSTL------LKALSGELSPDSGEVTLNGVPLNSWPP   70 (259)
T ss_pred             eeeeeEEEeec----ceeccCcceeccCCcEEEEECCCCc--cHHHH------HHHhhCccCCCCCeEeeCCcChhhCCH
Confidence            46788888643    4589999999998      999999  57665      679999999999999999999865 45


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCCh--HHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhh
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK--DLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVW  201 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~  201 (601)
                      .++.+.-+++||+..+-+.+||.|-+.++..-++...  .+..+.++++|+..++.++..|...+|||||||||.+||||
T Consensus        71 ~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvL  150 (259)
T COG4559          71 EELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVL  150 (259)
T ss_pred             HHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHH
Confidence            5667778999999998778999999999887664333  34455578999999999999999999999999999987765


Q ss_pred             cchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEE
Q psy7365         202 FNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTV  281 (601)
Q Consensus       202 ~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~l  281 (601)
                      +.-                                    ..|                               ...+++|
T Consensus       151 aQl------------------------------------~~~-------------------------------v~~~r~L  163 (259)
T COG4559         151 AQL------------------------------------WPP-------------------------------VPSGRWL  163 (259)
T ss_pred             HHc------------------------------------cCC-------------------------------CCCCceE
Confidence            422                                    222                               1125699


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       282 iLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                      +||||||+||+..+..++.+.+++.     .+|..|+.+-||++.+..+|||+++|.+|+++++|++.
T Consensus       164 ~LDEPtsaLDi~HQ~~tl~laR~la-----~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~  226 (259)
T COG4559         164 FLDEPTSALDIAHQHHTLRLARQLA-----REGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQ  226 (259)
T ss_pred             EecCCccccchHHHHHHHHHHHHHH-----hcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHH
Confidence            9999999999999999999999883     46788999999999999999999999999999999874

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=100.00  E-value=1.3e-33  Score=271.72  Aligned_cols=165  Identities=38%  Similarity=0.701  Sum_probs=141.8

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTT  125 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~  125 (601)
                      ++++++.|+.    .++++++||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++......
T Consensus         3 ~~~l~~~~~~----~~~l~~~~~~i~~Ge~~~i~G~nGs--GKStL------l~~l~G~~~~~~G~i~~~g~~~~~~~~~   70 (173)
T cd03230           3 VRNLSKRYGK----KTALDDISLTVEKGEIYGLLGPNGA--GKTTL------IKIILGLLKPDSGEIKVLGKDIKKEPEE   70 (173)
T ss_pred             EEEEEEEECC----eeeeeeeEEEEcCCcEEEEECCCCC--CHHHH------HHHHhCCCCCCCeEEEECCEEcccchHh
Confidence            6889998853    3599999999988      999999  56665      5799999999999999999987543345


Q ss_pred             hcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchh
Q psy7365         126 IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNK  205 (601)
Q Consensus       126 ~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~  205 (601)
                      .++.++|+||++.+|+.+|+.||+.                                    |||||+||+++||++    
T Consensus        71 ~~~~i~~~~q~~~~~~~~tv~~~~~------------------------------------LS~G~~qrv~laral----  110 (173)
T cd03230          71 VKRRIGYLPEEPSLYENLTVRENLK------------------------------------LSGGMKQRLALAQAL----  110 (173)
T ss_pred             hhccEEEEecCCccccCCcHHHHhh------------------------------------cCHHHHHHHHHHHHH----
Confidence            5678999999999999999999984                                    999999999865432    


Q ss_pred             hHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEec
Q psy7365         206 AWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDE  285 (601)
Q Consensus       206 ~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDE  285 (601)
                                                        +.                                   +|+++||||
T Consensus       111 ----------------------------------~~-----------------------------------~p~illlDE  121 (173)
T cd03230         111 ----------------------------------LH-----------------------------------DPELLILDE  121 (173)
T ss_pred             ----------------------------------Hc-----------------------------------CCCEEEEeC
Confidence                                              22                                   258999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcc
Q psy7365         286 PTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL  342 (601)
Q Consensus       286 PtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkI  342 (601)
                      ||++||+.++..+++.|+++.     .+|.|+|++||+.+++...||++++|.+|++
T Consensus       122 Pt~~LD~~~~~~l~~~l~~~~-----~~g~tiii~th~~~~~~~~~d~i~~l~~g~i  173 (173)
T cd03230         122 PTSGLDPESRREFWELLRELK-----KEGKTILLSSHILEEAERLCDRVAILNNGRI  173 (173)
T ss_pred             CccCCCHHHHHHHHHHHHHHH-----HCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence            999999999999999999873     2488999999999999999999999999874

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=100.00  E-value=2.3e-33  Score=295.03  Aligned_cols=323  Identities=23%  Similarity=0.307  Sum_probs=228.2

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-------------chHHhc---ccEEEEccC----CC
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-------------DMTTIR---RSLGVCPQY----NA  138 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-------------~~~~~~---~~ig~v~Q~----~~  138 (601)
                      +||||.  ||||     . .++|+|.+.|.=|.-  ++.+-..             .-..+.   -++..=||.    |.
T Consensus       106 lG~NGi--GKsT-----a-lkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk  175 (591)
T COG1245         106 LGPNGI--GKST-----A-LKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPK  175 (591)
T ss_pred             EcCCCc--cHHH-----H-HHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHH
Confidence            899998  4554     4 579999999976653  2211100             000111   123333454    22


Q ss_pred             CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhh
Q psy7365         139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAAN  218 (601)
Q Consensus       139 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~  218 (601)
                      .+.. +|.|-+.-..         -+-+.+++++.++|+...+|.+++|||||-||++|           |+++      
T Consensus       176 ~~KG-~v~elLk~~d---------e~g~~devve~l~L~nvl~r~v~~LSGGELQr~aI-----------aa~l------  228 (591)
T COG1245         176 VVKG-KVGELLKKVD---------ERGKFDEVVERLGLENVLDRDVSELSGGELQRVAI-----------AAAL------  228 (591)
T ss_pred             Hhcc-hHHHHHHhhh---------hcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHH-----------HHHH------
Confidence            2222 6665543211         11256889999999999999999999999999984           3321      


Q ss_pred             hhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHH
Q psy7365         219 NVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSI  298 (601)
Q Consensus       219 ~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l  298 (601)
                                           .                                   ..++++++|||||-||..+|-.+
T Consensus       229 ---------------------~-----------------------------------rdADvY~FDEpsSyLDi~qRl~~  252 (591)
T COG1245         229 ---------------------L-----------------------------------RDADVYFFDEPSSYLDIRQRLNA  252 (591)
T ss_pred             ---------------------h-----------------------------------ccCCEEEEcCCcccccHHHHHHH
Confidence                                 1                                   12599999999999999999999


Q ss_pred             HHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecC-----Cccccc------------c-----------Cccc
Q psy7365         299 WELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA-----GKLQCC------------G-----------SSVF  350 (601)
Q Consensus       299 ~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~-----GkIv~~------------G-----------~~~l  350 (601)
                      -.+++++.     ..+++|++++||+..+..++|.|.++-.     |-+..-            |           .+..
T Consensus       253 ar~Irel~-----~~~k~ViVVEHDLavLD~lsD~vhI~YG~pg~YGvvs~p~svr~gIN~yL~Gyl~~EN~R~R~~~I~  327 (591)
T COG1245         253 ARVIRELA-----EDGKYVIVVEHDLAVLDYLSDFVHILYGEPGVYGVVSKPKSVRVGINEYLKGYLPEENVRFRPEEIE  327 (591)
T ss_pred             HHHHHHHh-----ccCCeEEEEechHHHHHHhhheeEEEecCCccceEeccchHHHHHHHHHHhccCchhccccccccee
Confidence            99999983     3489999999999999999999998842     222100            0           0000


Q ss_pred             c--------------------ccccc------------ccccc---ccc--------------cCCc---ccccccccCC
Q psy7365         351 L--------------------KNSFA------------RGYYL---SLD--------------MKSA---PQKSYIGYCP  378 (601)
Q Consensus       351 L--------------------k~~~g------------~g~~i---gld--------------~~~~---~~~~~ig~v~  378 (601)
                      +                    +.+.+            .+-++   |-+              .++.   ...-+++|-|
T Consensus       328 F~~~~~~~~~~~~~lv~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKP  407 (591)
T COG1245         328 FEEKPPRDDKARDTLVEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKP  407 (591)
T ss_pred             eeccCcccccccceeeecchheeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecc
Confidence            0                    00000            00000   000              0001   2235689999


Q ss_pred             CCcccCCCCCHHHHHHHhHHh-cCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECC
Q psy7365         379 QFDALNDRLTPREHLEFYSRV-RNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEP  457 (601)
Q Consensus       379 Q~~~l~~~lTv~E~L~~~~~~-~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEP  457 (601)
                      |.-.--.+.||.+.+.-.... ++-+     -...++++-++|.+..++++..||||+.|||+||.||..++++++||||
T Consensus       408 QyI~~~~~gtV~~~l~~~~~~~~~~s-----~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEP  482 (591)
T COG1245         408 QYISPDYDGTVEDLLRSAIRSAFGSS-----YFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEP  482 (591)
T ss_pred             eeecCCCCCcHHHHHHHhhhhhcccc-----hhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCc
Confidence            976555678999987654332 1111     1235678889999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEe
Q psy7365         458 TSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMV  504 (601)
Q Consensus       458 TsGLD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~  504 (601)
                      ++-||.+.|-.+.+.|+++.++ ++|.+++-||+-.+..++||+++..
T Consensus       483 SA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~  530 (591)
T COG1245         483 SAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE  530 (591)
T ss_pred             hhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence            9999999999999999998765 8999999999999999999999875

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.3e-33  Score=277.61  Aligned_cols=189  Identities=20%  Similarity=0.272  Sum_probs=156.5

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchH
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMT  124 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~  124 (601)
                      .+++|++.|++    .++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|+++|.++.....
T Consensus         3 ~~~~l~~~~~~----~~il~~~s~~i~~Ge~~~l~G~nGs--GKSTL------l~~i~G~~~~~~G~v~~~g~~~~~~~~   70 (200)
T PRK13540          3 DVIELDFDYHD----QPLLQQISFHLPAGGLLHLKGSNGA--GKTTL------LKLIAGLLNPEKGEILFERQSIKKDLC   70 (200)
T ss_pred             EEEEEEEEeCC----eeEEeeeeEEECCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCeeEEECCCccccCHH
Confidence            47899999863    4599999999988      999999  56655      579999999999999999998865444


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcch
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNN  204 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~  204 (601)
                      ..++.+||+||++.+++.+||.||+.|+....   ..  ..++.++++.+++.+..++++.+||||||||+++||++   
T Consensus        71 ~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~---~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral---  142 (200)
T PRK13540         71 TYQKQLCFVGHRSGINPYLTLRENCLYDIHFS---PG--AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLW---  142 (200)
T ss_pred             HHHhheEEeccccccCcCCCHHHHHHHHHhcC---cc--hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHH---
Confidence            56778999999999999999999999864321   11  24678999999999888999999999999999864432   


Q ss_pred             hhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEe
Q psy7365         205 KAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILD  284 (601)
Q Consensus       205 ~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLD  284 (601)
                                                         +.+                                   |+++|||
T Consensus       143 -----------------------------------~~~-----------------------------------p~~lilD  152 (200)
T PRK13540        143 -----------------------------------MSK-----------------------------------AKLWLLD  152 (200)
T ss_pred             -----------------------------------hcC-----------------------------------CCEEEEe
Confidence                                               233                                   5899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEE
Q psy7365         285 EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIA  335 (601)
Q Consensus       285 EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~  335 (601)
                      |||+|||+.++..+++.|+++.     ..|.|+|++||+.+.+.. ||.-+
T Consensus       153 EP~~~LD~~~~~~l~~~l~~~~-----~~~~tiii~sh~~~~~~~-~d~~~  197 (200)
T PRK13540        153 EPLVALDELSLLTIITKIQEHR-----AKGGAVLLTSHQDLPLNK-ADYEE  197 (200)
T ss_pred             CCCcccCHHHHHHHHHHHHHHH-----HcCCEEEEEeCCchhccc-cchhh
Confidence            9999999999999999999872     358999999999887754 77543

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=100.00  E-value=1.9e-33  Score=282.92  Aligned_cols=202  Identities=28%  Similarity=0.410  Sum_probs=159.0

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-chH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DMT  124 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~~  124 (601)
                      ++++++.|++   ...+++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++.. +..
T Consensus         3 ~~~l~~~~~~---~~~~l~~i~~~i~~Ge~~~l~G~nGs--GKSTL------l~~i~Gl~~~~~G~v~~~g~~~~~~~~~   71 (236)
T cd03253           3 FENVTFAYDP---GRPVLKDVSFTIPAGKKVAIVGPSGS--GKSTI------LRLLFRFYDVSSGSILIDGQDIREVTLD   71 (236)
T ss_pred             EEEEEEEeCC---CCceeeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcccCCCCCEEEECCEEhhhCCHH
Confidence            6889998742   24589999999988      999999  56665      579999999999999999998753 344


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHH-----HHHHHHHHc--CCCcccCCccccCChHHHhhhhc
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL-----EISNMIGDL--GIPHKRTSLANTLSGGMQRKLDN  197 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qr~~~  197 (601)
                      ..++.+||+||++.+|+ .|+.||+.++...  .+......     .+.+.++.+  |+....++++.+||||||||+++
T Consensus        72 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~l  148 (236)
T cd03253          72 SLRRAIGVVPQDTVLFN-DTIGYNIRYGRPD--ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAI  148 (236)
T ss_pred             HHHhhEEEECCCChhhc-chHHHHHhhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHH
Confidence            55678999999998885 7999999886432  22222111     123344444  55666777899999999999986


Q ss_pred             hhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCC
Q psy7365         198 VKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVP  277 (601)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  277 (601)
                      ||+|+                                      .+                                   
T Consensus       149 a~aL~--------------------------------------~~-----------------------------------  155 (236)
T cd03253         149 ARAIL--------------------------------------KN-----------------------------------  155 (236)
T ss_pred             HHHHh--------------------------------------cC-----------------------------------
Confidence            54332                                      22                                   


Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                      |+++||||||+|||+.++..++++|.++     +. |+|||++||+.+++.. ||++++|.+|++...++
T Consensus       156 p~llllDEP~~~LD~~~~~~l~~~l~~~-----~~-~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~~~  218 (236)
T cd03253         156 PPILLLDEATSALDTHTEREIQAALRDV-----SK-GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGT  218 (236)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHh-----cC-CCEEEEEcCCHHHHHh-CCEEEEEECCEEEeeCC
Confidence            5899999999999999999999999987     23 8999999999999965 99999999999876654

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=8.3e-34  Score=298.13  Aligned_cols=201  Identities=24%  Similarity=0.395  Sum_probs=174.5

Q ss_pred             CcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcc-cccccccCCCCcccCC
Q psy7365         314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAP-QKSYIGYCPQFDALND  385 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~-~~~~ig~v~Q~~~l~~  385 (601)
                      +.+++   +|++.-..-++.+.+++...   ||+++.++       ++.|+.++.|.++...+ .+|.||+|||+..+||
T Consensus        17 ~~~av---~~isl~i~~Gef~~lLGPSG---cGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFP   90 (352)
T COG3842          17 DFTAV---DDISLDIKKGEFVTLLGPSG---CGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFP   90 (352)
T ss_pred             CeeEE---ecceeeecCCcEEEEECCCC---CCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCC
Confidence            34444   89999999999999998632   67666553       34455555566655443 4788999999999999


Q ss_pred             CCCHHHHHHHhHHhcC-CChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHH
Q psy7365         386 RLTPREHLEFYSRVRN-LPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG  464 (601)
Q Consensus       386 ~lTv~E~L~~~~~~~g-~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~  464 (601)
                      +|||+||+.|..+..+ .+..+.++++.++|+.++|.++.+++|.+|||||||||+|||||+.+|++|+||||.|+||..
T Consensus        91 HltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~k  170 (352)
T COG3842          91 HMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAK  170 (352)
T ss_pred             CCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHH
Confidence            9999999999988554 344557789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         465 ARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       465 ~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      -|.++...++++.++ |.|.|++|||-+|+..++|||++|++|+|...|+|+++-.+
T Consensus       171 LR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~  227 (352)
T COG3842         171 LREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER  227 (352)
T ss_pred             HHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence            999999999998765 99999999999999999999999999999999999998553

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.9e-34  Score=275.47  Aligned_cols=212  Identities=24%  Similarity=0.277  Sum_probs=185.7

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.+++++|.|++.-    +|+|+|+++++      +|||||  |||||      .++++.|+++++|+|+++|.++.. +
T Consensus         2 I~i~nv~K~y~~~~----vl~~isl~i~~g~iTs~IGPNGA--GKSTL------LS~~sRL~~~d~G~i~i~g~~~~~~~   69 (252)
T COG4604           2 ITIENVSKSYGTKV----VLDDVSLDIPKGGITSIIGPNGA--GKSTL------LSMMSRLLKKDSGEITIDGLELTSTP   69 (252)
T ss_pred             eeehhhhHhhCCEE----eeccceeeecCCceeEEECCCCc--cHHHH------HHHHHHhccccCceEEEeeeecccCC
Confidence            45899999987654    99999999988      999999  67766      679999999999999999999974 5


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhc--CCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK--QVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                      ...+.+.+..+-|.+..-..+||+|-+.|+..-|  |-+..+.+..++++++.++|++..+|+..+||||||||.-+|.|
T Consensus        70 s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMV  149 (252)
T COG4604          70 SKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMV  149 (252)
T ss_pred             hHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhhee
Confidence            6678889999999999888999999999986544  55567778889999999999999999999999999999765444


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      ++.|                                                                         .+.
T Consensus       150 laQd-------------------------------------------------------------------------Tdy  156 (252)
T COG4604         150 LAQD-------------------------------------------------------------------------TDY  156 (252)
T ss_pred             eecc-------------------------------------------------------------------------CcE
Confidence            3322                                                                         489


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                      ++||||.++||......++++|+++..    +-|+||+++-||++++..++|.|+-|.+|+++..|++..
T Consensus       157 vlLDEPLNNLDmkHsv~iMk~Lrrla~----el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~e  222 (252)
T COG4604         157 VLLDEPLNNLDMKHSVQIMKILRRLAD----ELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDE  222 (252)
T ss_pred             EEecCcccccchHHHHHHHHHHHHHHH----HhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHH
Confidence            999999999999999999999999853    459999999999999999999999999999999997643

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=100.00  E-value=3e-33  Score=274.21  Aligned_cols=178  Identities=29%  Similarity=0.422  Sum_probs=147.9

Q ss_pred             hhcccccccccCC--CccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCC--CCCeeEEEEccccCC
Q psy7365          51 LFESLSENRDKLG--IDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGML--PVSSGTAKIYDHDIR  120 (601)
Q Consensus        51 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~--~~~~G~v~~~g~~~~  120 (601)
                      .+++|++.|+...  ...++++|+||++.+      +||||+  |||||      .++|+|++  +|++|+|.++|+++.
T Consensus         5 ~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGs--GKStL------l~~i~Gl~~~~~~~G~i~~~g~~~~   76 (194)
T cd03213           5 SFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGA--GKSTL------LNALAGRRTGLGVSGEVLINGRPLD   76 (194)
T ss_pred             EEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCC--CHHHH------HHHHhCCCCCCCCceEEEECCEeCc
Confidence            4889999986420  125699999999988      999999  57665      67999999  999999999999885


Q ss_pred             CchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh
Q psy7365         121 TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       121 ~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                      .  ...++.++|+||++.+|+.+|+.||+.++....                             +||||||||+++||+
T Consensus        77 ~--~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-----------------------------~LS~G~~qrv~lara  125 (194)
T cd03213          77 K--RSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-----------------------------GLSGGERKRVSIALE  125 (194)
T ss_pred             h--HhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-----------------------------cCCHHHHHHHHHHHH
Confidence            3  245678999999999999999999997643210                             899999999975443


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      |                                      +.+                                   |++
T Consensus       126 l--------------------------------------~~~-----------------------------------p~i  132 (194)
T cd03213         126 L--------------------------------------VSN-----------------------------------PSL  132 (194)
T ss_pred             H--------------------------------------HcC-----------------------------------CCE
Confidence            2                                      232                                   589


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchh-HHHhcCCEEEEecCCccccc
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMD-EADLLGDRIAIIAAGKLQCC  345 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~-~~~~l~Drv~vL~~GkIv~~  345 (601)
                      +||||||+|||+.+++.++++|+++.     .+|+|+|++||+++ ++...||++++|.+|++...
T Consensus       133 lllDEP~~~LD~~~~~~l~~~l~~~~-----~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~  193 (194)
T cd03213         133 LFLDEPTSGLDSSSALQVMSLLRRLA-----DTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYF  193 (194)
T ss_pred             EEEeCCCcCCCHHHHHHHHHHHHHHH-----hCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEec
Confidence            99999999999999999999999873     34899999999997 78889999999999997643

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=2.8e-33  Score=273.82  Aligned_cols=178  Identities=27%  Similarity=0.280  Sum_probs=146.6

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCC--CCCeeEEEEccccCCC
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGML--PVSSGTAKIYDHDIRT  121 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~--~~~~G~v~~~g~~~~~  121 (601)
                      ..++++++.|+......++++|+||++.+      +|||||  |||||      .++|+|+.  +|++|+|.++|+++. 
T Consensus         4 l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGs--GKSTL------l~~l~G~~~~~~~~G~i~~~g~~~~-   74 (192)
T cd03232           4 LTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGA--GKTTL------LDVLAGRKTAGVITGEILINGRPLD-   74 (192)
T ss_pred             EEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCC--CHHHH------HHHHhCCCcCCCcceEEEECCEehH-
Confidence            34899999986432235699999999988      999999  57665      67999986  489999999999874 


Q ss_pred             chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhh
Q psy7365         122 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVW  201 (601)
Q Consensus       122 ~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~  201 (601)
                        ...++.++|+||++.+|+.+|++||+.+....                +             +|||||+||+++||+|
T Consensus        75 --~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~----------------~-------------~LSgGe~qrv~la~al  123 (192)
T cd03232          75 --KNFQRSTGYVEQQDVHSPNLTVREALRFSALL----------------R-------------GLSVEQRKRLTIGVEL  123 (192)
T ss_pred             --HHhhhceEEecccCccccCCcHHHHHHHHHHH----------------h-------------cCCHHHhHHHHHHHHH
Confidence              34567899999999999999999999874311                0             8999999999864432


Q ss_pred             cchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEE
Q psy7365         202 FNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTV  281 (601)
Q Consensus       202 ~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~l  281 (601)
                      +                                      .                                   +|+++
T Consensus       124 ~--------------------------------------~-----------------------------------~p~vl  130 (192)
T cd03232         124 A--------------------------------------A-----------------------------------KPSIL  130 (192)
T ss_pred             h--------------------------------------c-----------------------------------CCcEE
Confidence            2                                      2                                   25899


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchh-HHHhcCCEEEEecC-Cccccc
Q psy7365         282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMD-EADLLGDRIAIIAA-GKLQCC  345 (601)
Q Consensus       282 iLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~-~~~~l~Drv~vL~~-GkIv~~  345 (601)
                      ||||||+|||+.++..+++.|+++.     ..|+|+|++||+++ ++...||++++|.+ |+++..
T Consensus       131 llDEP~~~LD~~~~~~l~~~l~~~~-----~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~  191 (192)
T cd03232         131 FLDEPTSGLDSQAAYNIVRFLKKLA-----DSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYF  191 (192)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHH-----HcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeC
Confidence            9999999999999999999999872     35899999999998 47889999999998 988654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=4.1e-33  Score=297.39  Aligned_cols=196  Identities=19%  Similarity=0.264  Sum_probs=169.0

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcc---c----ccccccCCCCcccCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAP---Q----KSYIGYCPQFDALNDRL  387 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~---~----~~~ig~v~Q~~~l~~~l  387 (601)
                      +++++-..-++.+++++...   +|++++++       ++.|+.++.+.++....   .    ++.+|||||++.+|+++
T Consensus        10 ~~vs~~i~~Gei~~l~G~sG---sGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~   86 (363)
T TIGR01186        10 NDADLAIAKGEIFVIMGLSG---SGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHM   86 (363)
T ss_pred             EeeEEEEcCCCEEEEECCCC---ChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCC
Confidence            89999999999999998532   55555432       34455555554443221   1    56899999999999999


Q ss_pred             CHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHH
Q psy7365         388 TPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARR  467 (601)
Q Consensus       388 Tv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~  467 (601)
                      ||+||+.|...+.+.+..+..+++.++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||+||||.+++
T Consensus        87 TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~  166 (363)
T TIGR01186        87 TILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRD  166 (363)
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence            99999999877777766667788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         468 FLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       468 ~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      .+.+.+.++.++ |+|||++|||++++..+||||++|++|+++..|+++++...
T Consensus       167 ~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~  220 (363)
T TIGR01186       167 SMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN  220 (363)
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence            999999999755 89999999999999999999999999999999999998653

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-33  Score=311.57  Aligned_cols=208  Identities=19%  Similarity=0.274  Sum_probs=167.0

Q ss_pred             chhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCC
Q psy7365          47 AYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIR  120 (601)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~  120 (601)
                      ..++.++||++.+      ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.
T Consensus       248 ~~~i~~~~l~~~~------~~~l~~vsl~i~~Ge~~~l~G~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~i~  313 (491)
T PRK10982        248 EVILEVRNLTSLR------QPSIRDVSFDLHKGEILGIAGLVGA--KRTDI------VETLFGIREKSAGTITLHGKKIN  313 (491)
T ss_pred             CcEEEEeCccccc------CcccceeeEEEeCCcEEEEecCCCC--CHHHH------HHHHcCCCcCCccEEEECCEECC
Confidence            3466799999873      2389999999988      999999  57665      57999999999999999999885


Q ss_pred             Cc--hHHhcccEEEEccCC---CCCCCCCHHHHH-----HHhHhhcCC-ChHHHHHHHHHHHHHcCCC-cccCCccccCC
Q psy7365         121 TD--MTTIRRSLGVCPQYN---ALFDKLTVEEHM-----WFYSQLKQV-PKDLAQLEISNMIGDLGIP-HKRTSLANTLS  188 (601)
Q Consensus       121 ~~--~~~~~~~ig~v~Q~~---~~~~~~tv~e~l-----~~~~~~~~~-~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS  188 (601)
                      ..  ....++.+||+||++   .+|+++|+.+|+     .++...++. +....+.++.++++.+++. +..++++.+||
T Consensus       314 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS  393 (491)
T PRK10982        314 NHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLS  393 (491)
T ss_pred             CCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCC
Confidence            32  233466799999995   478889888773     322222232 3344556788999999996 56899999999


Q ss_pred             hHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHH
Q psy7365         189 GGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVT  268 (601)
Q Consensus       189 gG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~  268 (601)
                      ||||||+++||++                                      +.+                          
T Consensus       394 gGq~qrv~la~al--------------------------------------~~~--------------------------  409 (491)
T PRK10982        394 GGNQQKVIIGRWL--------------------------------------LTQ--------------------------  409 (491)
T ss_pred             cHHHHHHHHHHHH--------------------------------------hcC--------------------------
Confidence            9999999754332                                      222                          


Q ss_pred             HHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccccc
Q psy7365         269 VLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  346 (601)
Q Consensus       269 ~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G  346 (601)
                               |++|||||||+|||+.++..++++|.++.     ..|.|||++|||++++..+|||+++|.+|+++..+
T Consensus       410 ---------p~illLDEPt~gLD~~~~~~~~~~l~~l~-----~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~  473 (491)
T PRK10982        410 ---------PEILMLDEPTRGIDVGAKFEIYQLIAELA-----KKDKGIIIISSEMPELLGITDRILVMSNGLVAGIV  473 (491)
T ss_pred             ---------CCEEEEcCCCcccChhHHHHHHHHHHHHH-----HCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEE
Confidence                     58999999999999999999999999873     35899999999999999999999999999987544

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.2e-33  Score=297.29  Aligned_cols=200  Identities=22%  Similarity=0.333  Sum_probs=169.6

Q ss_pred             CcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-cccccccccCCCCcccCC
Q psy7365         314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-APQKSYIGYCPQFDALND  385 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-~~~~~~ig~v~Q~~~l~~  385 (601)
                      +++++   +++++...-++.+++++...   +|++++++       +..|+.++.+.++.. .+.++.|||+||++.+|+
T Consensus        16 ~~~~l---~~vsl~i~~Ge~~~llG~sG---sGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp   89 (356)
T PRK11650         16 KTQVI---KGIDLDVADGEFIVLVGPSG---CGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYP   89 (356)
T ss_pred             CCEEE---eeeeEEEcCCCEEEEECCCC---CcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccC
Confidence            45555   88898888999999997522   55555443       333444444444332 223578999999999999


Q ss_pred             CCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHH
Q psy7365         386 RLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGA  465 (601)
Q Consensus       386 ~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~  465 (601)
                      ++||+||+.|..+.++.+..+..++++++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||++||+.+
T Consensus        90 ~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~  169 (356)
T PRK11650         90 HMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKL  169 (356)
T ss_pred             CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            99999999998776666666666789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         466 RRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       466 ~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      +..+++.|+++.++ |.|+|++|||++++..+|||+++|++|+++..|+++++.+
T Consensus       170 r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~  224 (356)
T PRK11650        170 RVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYE  224 (356)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence            99999999998765 9999999999999999999999999999999999999854

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=2.7e-33  Score=312.55  Aligned_cols=208  Identities=24%  Similarity=0.336  Sum_probs=166.9

Q ss_pred             cchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccC
Q psy7365          46 GAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI  119 (601)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~  119 (601)
                      +..+..+++|++         .+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++
T Consensus       265 ~~~~l~~~~l~~---------~~l~~isl~i~~Ge~~~l~G~NGs--GKSTL------l~~i~Gl~~p~~G~i~~~g~~i  327 (510)
T PRK15439        265 GAPVLTVEDLTG---------EGFRNISLEVRAGEILGLAGVVGA--GRTEL------AETLYGLRPARGGRIMLNGKEI  327 (510)
T ss_pred             CCceEEEeCCCC---------CCccceeEEEcCCcEEEEECCCCC--CHHHH------HHHHcCCCCCCCcEEEECCEEC
Confidence            344566888883         159999999988      999999  57665      6799999999999999999987


Q ss_pred             CCc-h-HHhcccEEEEccCC---CCCCCCCHHHHHHHhHh--h-cCCChHHHHHHHHHHHHHcCCC-cccCCccccCChH
Q psy7365         120 RTD-M-TTIRRSLGVCPQYN---ALFDKLTVEEHMWFYSQ--L-KQVPKDLAQLEISNMIGDLGIP-HKRTSLANTLSGG  190 (601)
Q Consensus       120 ~~~-~-~~~~~~ig~v~Q~~---~~~~~~tv~e~l~~~~~--~-~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG  190 (601)
                      ... . ...++++||+||++   .+|+.+|+.+|+.+...  . ........+.++.++++.+|++ +..++++++||||
T Consensus       328 ~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG  407 (510)
T PRK15439        328 NALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGG  407 (510)
T ss_pred             CCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcH
Confidence            532 2 22456899999985   48889999999864321  1 1112233345688999999997 7889999999999


Q ss_pred             HHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHH
Q psy7365         191 MQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVL  270 (601)
Q Consensus       191 ~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~  270 (601)
                      ||||+++||++                                      +.+                            
T Consensus       408 ~kqrl~la~al--------------------------------------~~~----------------------------  421 (510)
T PRK15439        408 NQQKVLIAKCL--------------------------------------EAS----------------------------  421 (510)
T ss_pred             HHHHHHHHHHH--------------------------------------hhC----------------------------
Confidence            99999754432                                      222                            


Q ss_pred             HhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         271 FAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       271 ~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                             |++|||||||+|||+.+++.++++|+++.     .+|.|||++|||++++..+||++++|.+|+++..++.
T Consensus       422 -------p~lLlLDEPt~gLD~~~~~~l~~~l~~l~-----~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~  487 (510)
T PRK15439        422 -------PQLLIVDEPTRGVDVSARNDIYQLIRSIA-----AQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTG  487 (510)
T ss_pred             -------CCEEEECCCCcCcChhHHHHHHHHHHHHH-----hCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcc
Confidence                   58999999999999999999999999883     3589999999999999999999999999998876543

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=100.00  E-value=4.2e-33  Score=275.26  Aligned_cols=192  Identities=22%  Similarity=0.257  Sum_probs=153.5

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      ..++++++.|+..  ..++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. +
T Consensus         7 l~~~~l~~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGs--GKSTL------l~~l~Gl~~~~~G~i~~~g~~~~~~~   76 (207)
T cd03369           7 IEVENLSVRYAPD--LPPVLKNVSFKVKAGEKIGIVGRTGA--GKSTL------ILALFRFLEAEEGKIEIDGIDISTIP   76 (207)
T ss_pred             EEEEEEEEEeCCC--CcccccCceEEECCCCEEEEECCCCC--CHHHH------HHHHhcccCCCCCeEEECCEEhHHCC
Confidence            4489999998542  23699999999988      999999  56665      579999999999999999998743 3


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhc
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWF  202 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~  202 (601)
                      ....++.+||+||++.+|+ .|+.||+.++.   ..+.    .++.++++       .++++.+|||||+||+++||+|+
T Consensus        77 ~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~---~~~~----~~~~~~l~-------~~~~~~~LS~G~~qrv~laral~  141 (207)
T cd03369          77 LEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD---EYSD----EEIYGALR-------VSEGGLNLSQGQRQLLCLARALL  141 (207)
T ss_pred             HHHHHhhEEEEecCCcccC-ccHHHHhcccC---CCCH----HHHHHHhh-------ccCCCCcCCHHHHHHHHHHHHHh
Confidence            3345678999999998886 59999997642   1222    22334443       36789999999999998654332


Q ss_pred             chhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEE
Q psy7365         203 NNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVI  282 (601)
Q Consensus       203 ~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~li  282 (601)
                                                            .+                                   |+++|
T Consensus       142 --------------------------------------~~-----------------------------------p~lll  148 (207)
T cd03369         142 --------------------------------------KR-----------------------------------PRVLV  148 (207)
T ss_pred             --------------------------------------hC-----------------------------------CCEEE
Confidence                                                  22                                   58999


Q ss_pred             EecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccccc
Q psy7365         283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  346 (601)
Q Consensus       283 LDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G  346 (601)
                      |||||+|||+.++..++++|+++     . +|.|+|++||+++++.. ||++++|.+|++...+
T Consensus       149 lDEP~~~LD~~~~~~l~~~l~~~-----~-~~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g  205 (207)
T cd03369         149 LDEATASIDYATDALIQKTIREE-----F-TNSTILTIAHRLRTIID-YDKILVMDAGEVKEYD  205 (207)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHh-----c-CCCEEEEEeCCHHHHhh-CCEEEEEECCEEEecC
Confidence            99999999999999999999986     2 48999999999999876 9999999999987655

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=100.00  E-value=2.8e-33  Score=285.30  Aligned_cols=192  Identities=24%  Similarity=0.374  Sum_probs=156.7

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      +..+++|++.|++    ..+++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|      
T Consensus         4 ~l~~~~l~~~~~~----~~vl~~vs~~i~~Ge~~~I~G~NGs--GKSTL------l~~i~Gl~~p~~G~i~~~~------   65 (251)
T PRK09544          4 LVSLENVSVSFGQ----RRVLSDVSLELKPGKILTLLGPNGA--GKSTL------VRVVLGLVAPDEGVIKRNG------   65 (251)
T ss_pred             EEEEeceEEEECC----ceEEEeEEEEEcCCcEEEEECCCCC--CHHHH------HHHHhCCCCCCceEEEECC------
Confidence            3458999999864    3599999999988      999999  56665      6799999999999999986      


Q ss_pred             hHHhcccEEEEccCCCCCCC--CCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh
Q psy7365         123 MTTIRRSLGVCPQYNALFDK--LTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                          +..++|+||++.+++.  .|+.+++.+..   +.+    .+++.++++.+|+.+..++++.+||||||||+++|++
T Consensus        66 ----~~~i~~v~q~~~~~~~l~~~~~~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~lara  134 (251)
T PRK09544         66 ----KLRIGYVPQKLYLDTTLPLTVNRFLRLRP---GTK----KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARA  134 (251)
T ss_pred             ----ccCEEEeccccccccccChhHHHHHhccc---ccc----HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHH
Confidence                2369999999987765  47787765421   222    3457789999999999999999999999999975443


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      |                                      +.+                                   |++
T Consensus       135 l--------------------------------------~~~-----------------------------------p~l  141 (251)
T PRK09544        135 L--------------------------------------LNR-----------------------------------PQL  141 (251)
T ss_pred             H--------------------------------------hcC-----------------------------------CCE
Confidence            2                                      222                                   589


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                      +||||||+|||+.++..+++.|+++.    +..|.|||++||+++++...||++++|.+ +++..++
T Consensus       142 llLDEPt~~LD~~~~~~l~~~L~~~~----~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~  203 (251)
T PRK09544        142 LVLDEPTQGVDVNGQVALYDLIDQLR----RELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGT  203 (251)
T ss_pred             EEEeCCCcCCCHHHHHHHHHHHHHHH----HhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCC
Confidence            99999999999999999999999873    22389999999999999999999999964 6665554

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=5.5e-33  Score=296.75  Aligned_cols=196  Identities=23%  Similarity=0.326  Sum_probs=167.3

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------ccc--ccccccccccCCc-ccccccccCCCCcccCCCCCHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSF--ARGYYLSLDMKSA-PQKSYIGYCPQFDALNDRLTPRE  391 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~--g~g~~igld~~~~-~~~~~ig~v~Q~~~l~~~lTv~E  391 (601)
                      +++++...-++.+++++...   +|++++++       +..  |+.++.+.+.... +.++.+||+||++.+|+++||+|
T Consensus        22 ~~vsl~i~~Ge~~~llGpsG---sGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~e   98 (362)
T TIGR03258        22 DDLSLEIEAGELLALIGKSG---CGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVED   98 (362)
T ss_pred             eeeEEEECCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHH
Confidence            78888888899999997522   45554432       333  4444444443221 23567999999999999999999


Q ss_pred             HHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHH
Q psy7365         392 HLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT  471 (601)
Q Consensus       392 ~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~  471 (601)
                      |+.|....++.+..+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|++|+|||||+|||+..+.++++
T Consensus        99 nl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~  178 (362)
T TIGR03258        99 NVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMRE  178 (362)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHH
Confidence            99998776676666667789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhC--CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         472 CIERAVSE--GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       472 lL~~l~~~--G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      .|+++.++  |+|+|++|||++|+..+||||++|++|+++..|+++++.++
T Consensus       179 ~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~  229 (362)
T TIGR03258       179 EIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA  229 (362)
T ss_pred             HHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            99999876  79999999999999999999999999999999999998654

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=100.00  E-value=2.3e-33  Score=289.42  Aligned_cols=201  Identities=22%  Similarity=0.327  Sum_probs=165.1

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-ch
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DM  123 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~  123 (601)
                      .++||++.|..  ...++++|+||++.+      +||||+  |||||      .++|+|+++ ++|+|.++|.++.. ..
T Consensus         4 ~~~nls~~~~~--~~~~~l~~isl~I~~Ge~~~IvG~nGs--GKSTL------l~~L~gl~~-~~G~I~i~g~~i~~~~~   72 (275)
T cd03289           4 TVKDLTAKYTE--GGNAVLENISFSISPGQRVGLLGRTGS--GKSTL------LSAFLRLLN-TEGDIQIDGVSWNSVPL   72 (275)
T ss_pred             EEEEEEEEeCC--CCCcceeceEEEEcCCCEEEEECCCCC--CHHHH------HHHHhhhcC-CCcEEEECCEEhhhCCH
Confidence            48899999842  234599999999988      999999  56655      579999998 79999999998854 44


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCcccc-----------CChHHH
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANT-----------LSGGMQ  192 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------LSgG~~  192 (601)
                      ..+++.++|+||+|.+|+. |+++|+.++..   .+.    +++.++++.+||.+..++++..           ||||||
T Consensus        73 ~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~~---~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~  144 (275)
T cd03289          73 QKWRKAFGVIPQKVFIFSG-TFRKNLDPYGK---WSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHK  144 (275)
T ss_pred             HHHhhhEEEECCCcccchh-hHHHHhhhccC---CCH----HHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHH
Confidence            5677899999999999974 99999964321   222    3567788999999888888877           999999


Q ss_pred             hhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHh
Q psy7365         193 RKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFA  272 (601)
Q Consensus       193 qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  272 (601)
                      ||+++|||+                                      +.+                              
T Consensus       145 qrl~LaRal--------------------------------------l~~------------------------------  156 (275)
T cd03289         145 QLMCLARSV--------------------------------------LSK------------------------------  156 (275)
T ss_pred             HHHHHHHHH--------------------------------------hcC------------------------------
Confidence            999865432                                      232                              


Q ss_pred             hccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         273 MSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       273 ~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                           |+++||||||++||+.++..+.+.|+++      ..++|||++||+++++.. |||+++|.+|+++..+++..
T Consensus       157 -----p~illlDEpts~LD~~~~~~l~~~l~~~------~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~  222 (275)
T cd03289         157 -----AKILLLDEPSAHLDPITYQVIRKTLKQA------FADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQK  222 (275)
T ss_pred             -----CCEEEEECccccCCHHHHHHHHHHHHHh------cCCCEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHH
Confidence                 5899999999999999999999999976      247999999999988865 99999999999998886643

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=100.00  E-value=2.9e-33  Score=270.41  Aligned_cols=167  Identities=35%  Similarity=0.522  Sum_probs=142.2

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc---
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD---  122 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~---  122 (601)
                      ++++++.|++    .++++++||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++...   
T Consensus         3 ~~~l~~~~~~----~~~l~~i~~~i~~G~~~~i~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~g~~~~~~~~~   70 (178)
T cd03229           3 LKNVSKRYGQ----KTVLNDVSLNIEAGEIVALLGPSGS--GKSTL------LRCIAGLEEPDSGSILIDGEDLTDLEDE   70 (178)
T ss_pred             EEEEEEEECC----eEEEeeeeEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCceEEEECCEEccccchh
Confidence            7889999864    4599999999988      999999  57665      6799999999999999999987542   


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhc
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWF  202 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~  202 (601)
                      ....++.++|+||++.+|+.+|+.||+.+.                                  ||||||||+++||+  
T Consensus        71 ~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~----------------------------------lS~G~~qr~~la~a--  114 (178)
T cd03229          71 LPPLRRRIGMVFQDFALFPHLTVLENIALG----------------------------------LSGGQQQRVALARA--  114 (178)
T ss_pred             HHHHhhcEEEEecCCccCCCCCHHHheeec----------------------------------CCHHHHHHHHHHHH--
Confidence            345667899999999999999999998653                                  99999999975443  


Q ss_pred             chhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEE
Q psy7365         203 NNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVI  282 (601)
Q Consensus       203 ~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~li  282 (601)
                                                          ++.+                                   |+++|
T Consensus       115 ------------------------------------l~~~-----------------------------------p~lli  123 (178)
T cd03229         115 ------------------------------------LAMD-----------------------------------PDVLL  123 (178)
T ss_pred             ------------------------------------HHCC-----------------------------------CCEEE
Confidence                                                2233                                   58999


Q ss_pred             EecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCc
Q psy7365         283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK  341 (601)
Q Consensus       283 LDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~Gk  341 (601)
                      |||||+|||+.++..++++|+++.    +..|.|+|++||+++++...||++++|.+|+
T Consensus       124 lDEP~~~LD~~~~~~l~~~l~~~~----~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~  178 (178)
T cd03229         124 LDEPTSALDPITRREVRALLKSLQ----AQLGITVVLVTHDLDEAARLADRVVVLRDGK  178 (178)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence            999999999999999999999873    2237899999999999999999999999874

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=6.4e-33  Score=295.54  Aligned_cols=202  Identities=23%  Similarity=0.342  Sum_probs=170.5

Q ss_pred             CCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-cccccccccCCCCcccC
Q psy7365         313 SGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-APQKSYIGYCPQFDALN  384 (601)
Q Consensus       313 ~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-~~~~~~ig~v~Q~~~l~  384 (601)
                      .++.++   +++++...-++.+++++...   +|++++++       +..|+.++.+.+... .+.++.+||+||++.+|
T Consensus        15 ~~~~~l---~~vs~~i~~Ge~~~l~GpsG---sGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lf   88 (353)
T TIGR03265        15 GAFTAL---KDISLSVKKGEFVCLLGPSG---CGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALF   88 (353)
T ss_pred             CCeEEE---EeeEEEEcCCCEEEEECCCC---CCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccC
Confidence            344544   78888888899999998532   55555443       333444444433322 22467899999999999


Q ss_pred             CCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHH
Q psy7365         385 DRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG  464 (601)
Q Consensus       385 ~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~  464 (601)
                      +++||+||+.|....++.+..+.+++++++++.++|.++.++++.+|||||||||+|||||+.+|++++|||||+|||+.
T Consensus        89 p~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~  168 (353)
T TIGR03265        89 PNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR  168 (353)
T ss_pred             CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence            99999999999877666666667788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         465 ARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       465 ~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      .+..+++.|+++.++ |.|+|++|||++|+..+||||++|++|+++..|+++++.++
T Consensus       169 ~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~  225 (353)
T TIGR03265       169 VREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH  225 (353)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            999999999998765 99999999999999999999999999999999999998653

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.4e-33  Score=294.76  Aligned_cols=195  Identities=21%  Similarity=0.312  Sum_probs=167.5

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc-ccccccccCCCCcccCCCCCHHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA-PQKSYIGYCPQFDALNDRLTPREHL  393 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~-~~~~~ig~v~Q~~~l~~~lTv~E~L  393 (601)
                      +++++...-++.+++++...   +|++++++       +..|+.++.+.++... ..++++||+||++.+|+++||+||+
T Consensus        23 ~~isl~i~~Ge~~~llGpsG---sGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi   99 (351)
T PRK11432         23 DNLNLTIKQGTMVTLLGPSG---CGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENV   99 (351)
T ss_pred             eeeEEEEcCCCEEEEECCCC---CcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHH
Confidence            78888888999999998532   55555443       2334444444443322 2357899999999999999999999


Q ss_pred             HHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHH
Q psy7365         394 EFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCI  473 (601)
Q Consensus       394 ~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL  473 (601)
                      .|..+.++.+..+..++++++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||+|||+..+.++++.|
T Consensus       100 ~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l  179 (351)
T PRK11432        100 GYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKI  179 (351)
T ss_pred             HHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            99877777666667788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         474 ERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       474 ~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      +++.++ |+|+|++|||++|+..+||||++|++|+++..|+++++..
T Consensus       180 ~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~  226 (351)
T PRK11432        180 RELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYR  226 (351)
T ss_pred             HHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            999765 8999999999999999999999999999999999999854

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=8.7e-33  Score=293.10  Aligned_cols=194  Identities=22%  Similarity=0.312  Sum_probs=166.8

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCc------ccccccccCCCCcccCCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSA------PQKSYIGYCPQFDALNDRLT  388 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~------~~~~~ig~v~Q~~~l~~~lT  388 (601)
                      +++++...-++.+++++...   +|+++++       +++.|+.++.+.++...      ..+++|||+||++.+++.+|
T Consensus        22 ~~vsl~i~~Gei~gIiG~sG---aGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~t   98 (343)
T TIGR02314        22 NNVSLHVPAGQIYGVIGASG---AGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRT   98 (343)
T ss_pred             eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCc
Confidence            89999999999999997522   4555543       23345554555444321      13568999999999999999


Q ss_pred             HHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHH
Q psy7365         389 PREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRF  468 (601)
Q Consensus       389 v~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~  468 (601)
                      |+||+.+.....+.+..+.++++.++++.+||.+..++++.+|||||||||+|||||+.+|++|||||||+||||.++..
T Consensus        99 v~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~  178 (343)
T TIGR02314        99 VFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQS  178 (343)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHH
Confidence            99999987766666666677789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHH
Q psy7365         469 LWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  518 (601)
Q Consensus       469 i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~  518 (601)
                      ++++|++++++ |.|||++||+++++.++||||++|++|+++..|+++++.
T Consensus       179 i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~  229 (343)
T TIGR02314       179 ILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF  229 (343)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            99999999875 999999999999999999999999999999999998874

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.5e-33  Score=282.77  Aligned_cols=199  Identities=22%  Similarity=0.327  Sum_probs=167.1

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------ccccccccccc---ccCC-cccccccccCCCCcccCCCCCHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSL---DMKS-APQKSYIGYCPQFDALNDRLTPR  390 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igl---d~~~-~~~~~~ig~v~Q~~~l~~~lTv~  390 (601)
                      +|++...+-+..+++++...   +|+++.++       ++.|+....+.   |... ....++|||++|+..+|++|||.
T Consensus        19 ~di~l~i~~Ge~vaLlGpSG---aGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa   95 (345)
T COG1118          19 DDISLDIKSGELVALLGPSG---AGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVA   95 (345)
T ss_pred             ccceeeecCCcEEEEECCCC---CcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHH
Confidence            47777777888888887532   55555443       33344333332   3333 23457899999999999999999


Q ss_pred             HHHHHhHHhcCC--ChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHH
Q psy7365         391 EHLEFYSRVRNL--PSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRF  468 (601)
Q Consensus       391 E~L~~~~~~~g~--~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~  468 (601)
                      +|+.|..+.+..  +....+.++.++|+.+.|++..+++|.+|||||||||++||||+.+|++|+||||+++||..-|.+
T Consensus        96 ~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~  175 (345)
T COG1118          96 DNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKE  175 (345)
T ss_pred             hhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHH
Confidence            999998866532  235677889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHhCC
Q psy7365         469 LWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQ  523 (601)
Q Consensus       469 i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~~~  523 (601)
                      +...|+++.++ |.|++++|||.+|+.++||||++|++|+|...|+|+++......
T Consensus       176 lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s  231 (345)
T COG1118         176 LRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPAS  231 (345)
T ss_pred             HHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCc
Confidence            99999999876 99999999999999999999999999999999999999765543

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7e-33  Score=278.67  Aligned_cols=201  Identities=21%  Similarity=0.327  Sum_probs=162.9

Q ss_pred             cCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcccccccccCCCCccc-
Q psy7365         312 LSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAPQKSYIGYCPQFDAL-  383 (601)
Q Consensus       312 ~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~~~~~ig~v~Q~~~l-  383 (601)
                      +.+..++   |++++...-++.+.+++...   .|+++++|       +..|+..+.+.+......+.+||||||...+ 
T Consensus        14 y~~~~vl---~~i~l~v~~G~~~~iiGPNG---aGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d   87 (254)
T COG1121          14 YGNRPVL---EDISLSVEKGEITALIGPNG---AGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVD   87 (254)
T ss_pred             ECCEeee---eccEEEEcCCcEEEEECCCC---CCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccC
Confidence            3333555   99999999999999998422   56666544       3444555555444434445789999996543 


Q ss_pred             -CCCCCHHHHHHHhHH----hcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCC
Q psy7365         384 -NDRLTPREHLEFYSR----VRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPT  458 (601)
Q Consensus       384 -~~~lTv~E~L~~~~~----~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPT  458 (601)
                       -..+||+|.+.+...    +.+...+..++.++++|+++|+.+++++++++|||||+|||.|||||+++|++|+|||||
T Consensus        88 ~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~  167 (254)
T COG1121          88 RSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPF  167 (254)
T ss_pred             CCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCc
Confidence             344799999987532    122333445788999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         459 SGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       459 sGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      +|+|+.++..++++|++++++|+||+++|||++.+.++||+|+.|+ +++++.|+++++.+
T Consensus       168 ~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~  227 (254)
T COG1121         168 TGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLT  227 (254)
T ss_pred             ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccC
Confidence            9999999999999999999889999999999999999999999995 68899999987643

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=100.00  E-value=5e-33  Score=267.58  Aligned_cols=164  Identities=27%  Similarity=0.464  Sum_probs=138.1

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-chH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DMT  124 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~~  124 (601)
                      ++++++.|+..  ..++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++.. ...
T Consensus         3 ~~~l~~~~~~~--~~~~l~~~~~~i~~Ge~~~i~G~nGs--GKStL------l~~l~G~~~~~~G~i~~~g~~~~~~~~~   72 (173)
T cd03246           3 VENVSFRYPGA--EPPVLRNVSFSIEPGESLAIIGPSGS--GKSTL------ARLILGLLRPTSGRVRLDGADISQWDPN   72 (173)
T ss_pred             EEEEEEEcCCC--CCcceeeeEEEECCCCEEEEECCCCC--CHHHH------HHHHHhccCCCCCeEEECCEEcccCCHH
Confidence            68899987532  24599999999987      999999  56665      579999999999999999998754 334


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcch
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNN  204 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~  204 (601)
                      ..++.++|+||++.+|+ .|+.||+                                     ||||||||+++||+|   
T Consensus        73 ~~~~~i~~~~q~~~~~~-~tv~~~l-------------------------------------LS~G~~qrv~la~al---  111 (173)
T cd03246          73 ELGDHVGYLPQDDELFS-GSIAENI-------------------------------------LSGGQRQRLGLARAL---  111 (173)
T ss_pred             HHHhheEEECCCCcccc-CcHHHHC-------------------------------------cCHHHHHHHHHHHHH---
Confidence            55678999999998887 4999987                                     999999999854432   


Q ss_pred             hhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEe
Q psy7365         205 KAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILD  284 (601)
Q Consensus       205 ~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLD  284 (601)
                                                         +.                                   +|+++|||
T Consensus       112 -----------------------------------~~-----------------------------------~p~~lllD  121 (173)
T cd03246         112 -----------------------------------YG-----------------------------------NPRILVLD  121 (173)
T ss_pred             -----------------------------------hc-----------------------------------CCCEEEEE
Confidence                                               22                                   25899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcc
Q psy7365         285 EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL  342 (601)
Q Consensus       285 EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkI  342 (601)
                      |||+|||+.++..+++.|+++.     .+|+|+|++||+++++ ..||++++|.+|++
T Consensus       122 EPt~~LD~~~~~~l~~~l~~~~-----~~~~tii~~sh~~~~~-~~~d~v~~l~~G~i  173 (173)
T cd03246         122 EPNSHLDVEGERALNQAIAALK-----AAGATRIVIAHRPETL-ASADRILVLEDGRV  173 (173)
T ss_pred             CCccccCHHHHHHHHHHHHHHH-----hCCCEEEEEeCCHHHH-HhCCEEEEEECCCC
Confidence            9999999999999999999873     3589999999999988 57999999999874

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=3.5e-33  Score=282.02  Aligned_cols=201  Identities=24%  Similarity=0.335  Sum_probs=169.6

Q ss_pred             ccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc---ccccccccCCCC
Q psy7365         311 SLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA---PQKSYIGYCPQF  380 (601)
Q Consensus       311 ~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~---~~~~~ig~v~Q~  380 (601)
                      .+.+++|+   +++++...-++.+++++...   +|++++++       +..|..+..|.++...   ...++++|+||.
T Consensus        11 ~y~~~~il---~~ls~~i~~G~i~~iiGpNG---~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~   84 (258)
T COG1120          11 GYGGKPIL---DDLSFSIPKGEITGILGPNG---SGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQS   84 (258)
T ss_pred             EECCeeEE---ecceEEecCCcEEEEECCCC---CCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccC
Confidence            45566776   99999999999999998532   67776654       3345555556555432   346889999999


Q ss_pred             cccCCCCCHHHHHHHhHH----hcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEEC
Q psy7365         381 DALNDRLTPREHLEFYSR----VRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDE  456 (601)
Q Consensus       381 ~~l~~~lTv~E~L~~~~~----~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDE  456 (601)
                      +...+.+||+|.+.+...    +++.+.++..+.++++|+.+++.++++|.+.+||||||||+.||+||+++|++|+|||
T Consensus        85 ~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDE  164 (258)
T COG1120          85 PSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDE  164 (258)
T ss_pred             CCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCC
Confidence            988889999999987532    2233344555679999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHH
Q psy7365         457 PTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  517 (601)
Q Consensus       457 PTsGLD~~~~~~i~~lL~~l~~-~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L  517 (601)
                      ||+.||+.++.+++++++++++ +|+|||+++||++.+.++||++++|++|++++.|+|+++
T Consensus       165 PTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~ev  226 (258)
T COG1120         165 PTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEV  226 (258)
T ss_pred             CccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchh
Confidence            9999999999999999999984 599999999999999999999999999999999998765

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=1.1e-32  Score=314.88  Aligned_cols=205  Identities=24%  Similarity=0.358  Sum_probs=169.8

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCC--eeEEEEccccCCCch
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVS--SGTAKIYDHDIRTDM  123 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~--~G~v~~~g~~~~~~~  123 (601)
                      .+++++.|++    ..+++|+|+++.+      +|||||  |||||      .++|+|.++|+  +|+|.++|+++..  
T Consensus        71 ~~~l~~~~~~----~~iL~~vs~~i~~Ge~~aI~GpnGa--GKSTL------L~iLaG~~~~~~~sG~I~inG~~~~~--  136 (659)
T PLN03211         71 ISDETRQIQE----RTILNGVTGMASPGEILAVLGPSGS--GKSTL------LNALAGRIQGNNFTGTILANNRKPTK--  136 (659)
T ss_pred             cccccccCCC----CeeeeCCEEEEECCEEEEEECCCCC--CHHHH------HHHHhCCCCCCceeEEEEECCEECch--
Confidence            4567777653    4599999999998      999999  57665      67999999985  9999999998742  


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhc---CCChHHHHHHHHHHHHHcCCCccc-----CCccccCChHHHhhh
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK---QVPKDLAQLEISNMIGDLGIPHKR-----TSLANTLSGGMQRKL  195 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~-----~~~~~~LSgG~~qr~  195 (601)
                       ..++++|||+|++.+++.+||+||+.|.+...   ..++++.+++++++++.+||.+..     ++.+++||||||||+
T Consensus       137 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv  215 (659)
T PLN03211        137 -QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRV  215 (659)
T ss_pred             -hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHH
Confidence             23567999999999999999999999976543   234455567789999999998765     456778999999999


Q ss_pred             hchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhcc
Q psy7365         196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSF  275 (601)
Q Consensus       196 ~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  275 (601)
                      ++|++|                                      +++                                 
T Consensus       216 ~ia~aL--------------------------------------~~~---------------------------------  224 (659)
T PLN03211        216 SIAHEM--------------------------------------LIN---------------------------------  224 (659)
T ss_pred             HHHHHH--------------------------------------HhC---------------------------------
Confidence            865433                                      233                                 


Q ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchh-HHHhcCCEEEEecCCccccccCcc
Q psy7365         276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMD-EADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       276 ~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~-~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                        |++++|||||+|||+.++..+.+.|+++.     .+|+|||+++|+++ ++.+++|++++|.+|+++..|+..
T Consensus       225 --P~iLlLDEPtsgLD~~~~~~l~~~L~~l~-----~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~  292 (659)
T PLN03211        225 --PSLLILDEPTSGLDATAAYRLVLTLGSLA-----QKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGS  292 (659)
T ss_pred             --CCEEEEeCCCCCcCHHHHHHHHHHHHHHH-----hCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHH
Confidence              58999999999999999999999999883     35899999999998 588999999999999998887654

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=100.00  E-value=1e-32  Score=276.09  Aligned_cols=179  Identities=23%  Similarity=0.384  Sum_probs=146.8

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCC--CCCCHHHHHHHhHhh-
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALF--DKLTVEEHMWFYSQL-  155 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~--~~~tv~e~l~~~~~~-  155 (601)
                      +|||||  |||||      .++|+|+++|++|+|.++|+++.    ..++.++|+||++.++  +.+|+.||+.++... 
T Consensus        12 ~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~g~~~~----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~   79 (223)
T TIGR03771        12 LGPNGA--GKTTL------LRAILGLIPPAKGTVKVAGASPG----KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH   79 (223)
T ss_pred             ECCCCC--CHHHH------HHHHhCCCCCCCceEEECCccch----HhhCcEEEecccccccCCCCccHHHHHHhccccc
Confidence            899999  56665      57999999999999999998763    2356799999998764  347999999875321 


Q ss_pred             ---cCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCc
Q psy7365         156 ---KQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSR  232 (601)
Q Consensus       156 ---~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~  232 (601)
                         .+.+....+.++.++++.+|+.+..++++.+||||||||+++||++                               
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral-------------------------------  128 (223)
T TIGR03771        80 IGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARAL-------------------------------  128 (223)
T ss_pred             cccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHH-------------------------------
Confidence               1112233445688999999999989999999999999999854432                               


Q ss_pred             chhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhcccc
Q psy7365         233 DDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSL  312 (601)
Q Consensus       233 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~  312 (601)
                             +.+                                   |+++||||||+|||+.++..+.+.|+++.     .
T Consensus       129 -------~~~-----------------------------------p~llilDEP~~~LD~~~~~~l~~~l~~~~-----~  161 (223)
T TIGR03771       129 -------ATR-----------------------------------PSVLLLDEPFTGLDMPTQELLTELFIELA-----G  161 (223)
T ss_pred             -------hcC-----------------------------------CCEEEEeCCcccCCHHHHHHHHHHHHHHH-----H
Confidence                   233                                   58999999999999999999999999873     3


Q ss_pred             CCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         313 SGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       313 ~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      +|+|+|++||+++++..+||+++++ +|+++..++.
T Consensus       162 ~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~  196 (223)
T TIGR03771       162 AGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTP  196 (223)
T ss_pred             cCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCH
Confidence            5899999999999999999999999 7998876654

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=100.00  E-value=5.1e-33  Score=268.60  Aligned_cols=170  Identities=27%  Similarity=0.412  Sum_probs=141.9

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchH
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMT  124 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~  124 (601)
                      .++++++.|+..  ..++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.....
T Consensus         2 ~~~~~~~~~~~~--~~~~l~~i~~~i~~Ge~~~i~G~nGs--GKStL------l~~l~G~~~~~~G~i~~~g~~~~~~~~   71 (178)
T cd03247           2 SINNVSFSYPEQ--EQQVLKNLSLELKQGEKIALLGRSGS--GKSTL------LQLLTGDLKPQQGEITLDGVPVSDLEK   71 (178)
T ss_pred             EEEEEEEEeCCC--CccceEEEEEEEcCCCEEEEECCCCC--CHHHH------HHHHhccCCCCCCEEEECCEEHHHHHH
Confidence            368899987542  23589999999988      999999  56665      579999999999999999987643233


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcch
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNN  204 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~  204 (601)
                      ..++.++|+||++.+|+ .|++||+                                  +.+||||||||+++||++   
T Consensus        72 ~~~~~i~~~~q~~~~~~-~tv~~~i----------------------------------~~~LS~G~~qrv~laral---  113 (178)
T cd03247          72 ALSSLISVLNQRPYLFD-TTLRNNL----------------------------------GRRFSGGERQRLALARIL---  113 (178)
T ss_pred             HHHhhEEEEccCCeeec-ccHHHhh----------------------------------cccCCHHHHHHHHHHHHH---
Confidence            45678999999998875 6999987                                  789999999999865433   


Q ss_pred             hhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEe
Q psy7365         205 KAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILD  284 (601)
Q Consensus       205 ~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLD  284 (601)
                                                         +.+                                   |+++|||
T Consensus       114 -----------------------------------~~~-----------------------------------p~~lllD  123 (178)
T cd03247         114 -----------------------------------LQD-----------------------------------APIVLLD  123 (178)
T ss_pred             -----------------------------------hcC-----------------------------------CCEEEEE
Confidence                                               233                                   5899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc
Q psy7365         285 EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  345 (601)
Q Consensus       285 EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~  345 (601)
                      |||+|||+.+++.+++.|.++     . ++.|+|++||+++++. .||++++|.+|+++..
T Consensus       124 EP~~~LD~~~~~~l~~~l~~~-----~-~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~~  177 (178)
T cd03247         124 EPTVGLDPITERQLLSLIFEV-----L-KDKTLIWITHHLTGIE-HMDKILFLENGKIIMQ  177 (178)
T ss_pred             CCcccCCHHHHHHHHHHHHHH-----c-CCCEEEEEecCHHHHH-hCCEEEEEECCEEEec
Confidence            999999999999999999987     2 4789999999999986 6999999999998653

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=100.00  E-value=1.9e-32  Score=313.48  Aligned_cols=212  Identities=22%  Similarity=0.281  Sum_probs=179.3

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc-
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD-  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~-  122 (601)
                      ..++|+++.|+......++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++... 
T Consensus         5 l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGs--GKSTL------l~~i~Gl~~~~~G~i~~~g~~i~~~~   76 (648)
T PRK10535          5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGS--GKSTL------MNILGCLDKPTSGTYRVAGQDVATLD   76 (648)
T ss_pred             EEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCeEEEECCEEcCcCC
Confidence            45899999985333345699999999988      999999  56655      5799999999999999999988642 


Q ss_pred             hHH----hcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhch
Q psy7365         123 MTT----IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNV  198 (601)
Q Consensus       123 ~~~----~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~  198 (601)
                      ...    .++.+||+||++.+|+.+|+.||+.+.....+.+..+.++++.++++.+||.+..++.+.+|||||+||+++|
T Consensus        77 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LA  156 (648)
T PRK10535         77 ADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIA  156 (648)
T ss_pred             HHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHH
Confidence            222    2568999999999999999999999876655666666677889999999999999999999999999999865


Q ss_pred             hhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCC
Q psy7365         199 KVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPA  278 (601)
Q Consensus       199 ~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  278 (601)
                      |+|+                                      ++                                   |
T Consensus       157 raL~--------------------------------------~~-----------------------------------P  163 (648)
T PRK10535        157 RALM--------------------------------------NG-----------------------------------G  163 (648)
T ss_pred             HHHh--------------------------------------cC-----------------------------------C
Confidence            4332                                      33                                   5


Q ss_pred             cEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       279 ~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      +++||||||+|||+.+++.+.++|+++.     .+|+|+|++||+.++.. .||++++|.+|+++..++.
T Consensus       164 ~lLllDEP~~gLD~~s~~~l~~ll~~l~-----~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~  227 (648)
T PRK10535        164 QVILADEPTGALDSHSGEEVMAILHQLR-----DRGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPPA  227 (648)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHH-----hcCCEEEEECCCHHHHH-hCCEEEEEECCEEEeecCc
Confidence            8999999999999999999999999873     35899999999999875 6999999999999887754

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=2.1e-32  Score=299.98  Aligned_cols=200  Identities=18%  Similarity=0.194  Sum_probs=164.4

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM  123 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~  123 (601)
                      ..+++|++.|++. ...++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.+.    
T Consensus        22 L~lknL~~~~~~~-~~~~IL~nVSfsI~~GEivgIiGpNGS--GKSTL------LkiLaGLl~P~sGeI~I~G~~~----   88 (549)
T PRK13545         22 DKLKDLFFRSKDG-EYHYALNNISFEVPEGEIVGIIGLNGS--GKSTL------SNLIAGVTMPNKGTVDIKGSAA----   88 (549)
T ss_pred             eEEEEEEEecCCC-ccceEEeeeEEEEeCCCEEEEEcCCCC--CHHHH------HHHHhCCCCCCceEEEECCEee----
Confidence            3477887776432 235699999999988      999999  56665      6799999999999999999642    


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcc
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFN  203 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~  203 (601)
                              ++++.+.+++.+|+.||+.+.....+.+..+..+++.++++.+|+.+..++++.+||||||||+++||||  
T Consensus        89 --------~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL--  158 (549)
T PRK13545         89 --------LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISV--  158 (549)
T ss_pred             --------eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHH--
Confidence                    2233455677899999999866555666666667788999999999999999999999999999854432  


Q ss_pred             hhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEE
Q psy7365         204 NKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVIL  283 (601)
Q Consensus       204 ~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liL  283 (601)
                                                          +.+                                   |++|||
T Consensus       159 ------------------------------------~~~-----------------------------------P~LLLL  167 (549)
T PRK13545        159 ------------------------------------HIN-----------------------------------PDILVI  167 (549)
T ss_pred             ------------------------------------HhC-----------------------------------CCEEEE
Confidence                                                222                                   589999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       284 DEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      ||||+|||+.++..+++.|.++.     ..|+|||++||+++++..+||++++|.+|++...+++
T Consensus       168 DEPTsgLD~~sr~~LlelL~el~-----~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~  227 (549)
T PRK13545        168 DEALSVGDQTFTKKCLDKMNEFK-----EQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDI  227 (549)
T ss_pred             ECCcccCCHHHHHHHHHHHHHHH-----hCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence            99999999999999999999872     3589999999999999999999999999999877654

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=100.00  E-value=5e-33  Score=269.26  Aligned_cols=170  Identities=29%  Similarity=0.431  Sum_probs=143.8

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-chH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DMT  124 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~~  124 (601)
                      ++++++.|+.    .++++++||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++.. ...
T Consensus         2 ~~~l~~~~~~----~~~l~~~~~~i~~G~~~~l~G~nGs--GKStL------l~~i~G~~~~~~G~v~~~g~~~~~~~~~   69 (180)
T cd03214           2 VENLSVGYGG----RTVLDDLSLSIEAGEIVGILGPNGA--GKSTL------LKTLAGLLKPSSGEILLDGKDLASLSPK   69 (180)
T ss_pred             eeEEEEEECC----eeeEeeeEEEECCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCcEEEECCEECCcCCHH
Confidence            6789998854    4599999999988      999999  56655      679999999999999999998854 333


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcch
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNN  204 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~  204 (601)
                      ..++.+||+||                                  +++.+|+.+..++.+.+||||||||+++||+|+  
T Consensus        70 ~~~~~i~~~~q----------------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~--  113 (180)
T cd03214          70 ELARKIAYVPQ----------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALA--  113 (180)
T ss_pred             HHHHHHhHHHH----------------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHh--
Confidence            45667999998                                  678889888888999999999999998654322  


Q ss_pred             hhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEe
Q psy7365         205 KAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILD  284 (601)
Q Consensus       205 ~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLD  284 (601)
                                                          .                                   +|+++|||
T Consensus       114 ------------------------------------~-----------------------------------~p~llllD  122 (180)
T cd03214         114 ------------------------------------Q-----------------------------------EPPILLLD  122 (180)
T ss_pred             ------------------------------------c-----------------------------------CCCEEEEe
Confidence                                                2                                   25899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccc
Q psy7365         285 EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQC  344 (601)
Q Consensus       285 EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~  344 (601)
                      |||+|||+.++..+.+.|.++.    +..|.|+|++||+++++.++||++++|.+|++..
T Consensus       123 EP~~~LD~~~~~~~~~~l~~~~----~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~  178 (180)
T cd03214         123 EPTSHLDIAHQIELLELLRRLA----RERGKTVVMVLHDLNLAARYADRVILLKDGRIVA  178 (180)
T ss_pred             CCccCCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            9999999999999999999873    1227899999999999999999999999998754

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.6e-32  Score=298.86  Aligned_cols=202  Identities=27%  Similarity=0.378  Sum_probs=163.3

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-chH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DMT  124 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~~  124 (601)
                      +++|++.|.  .++ ++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|++||.+..+ ...
T Consensus       323 ~~~l~~~y~--~g~-~~l~~l~~t~~~g~~talvG~SGa--GKSTL------l~lL~G~~~~~~G~I~vng~~l~~l~~~  391 (559)
T COG4988         323 LENLSFRYP--DGK-PALSDLNLTIKAGQLTALVGASGA--GKSTL------LNLLLGFLAPTQGEIRVNGIDLRDLSPE  391 (559)
T ss_pred             ecceEEecC--CCC-cccCCceeEecCCcEEEEECCCCC--CHHHH------HHHHhCcCCCCCceEEECCccccccCHH
Confidence            568888854  444 799999999988      999999  56655      579999999999999999999875 456


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCccc------C----CccccCChHHHhh
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKR------T----SLANTLSGGMQRK  194 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~------~----~~~~~LSgG~~qr  194 (601)
                      ..++.+++|+|+|.+|+ -|++||+.|+...  .+    ++.+.++++..|+.+..      |    .....|||||+||
T Consensus       392 ~~~k~i~~v~Q~p~lf~-gTireNi~l~~~~--~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QR  464 (559)
T COG4988         392 AWRKQISWVSQNPYLFA-GTIRENILLARPD--AS----DEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQR  464 (559)
T ss_pred             HHHhHeeeeCCCCcccc-ccHHHHhhccCCc--CC----HHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHH
Confidence            78899999999999985 5999999886432  22    34466677777765443      2    3334599999999


Q ss_pred             hhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhc
Q psy7365         195 LDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMS  274 (601)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  274 (601)
                      |++|||++++                                                                      
T Consensus       465 laLARAll~~----------------------------------------------------------------------  474 (559)
T COG4988         465 LALARALLSP----------------------------------------------------------------------  474 (559)
T ss_pred             HHHHHHhcCC----------------------------------------------------------------------
Confidence            9866544333                                                                      


Q ss_pred             cCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc
Q psy7365         275 FVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  351 (601)
Q Consensus       275 ~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL  351 (601)
                         ++++++||||++||.++...+.+.|.++.      +++|++++||+++.+. -+|+|++|++|++++.|+...+
T Consensus       475 ---~~l~llDEpTA~LD~etE~~i~~~l~~l~------~~ktvl~itHrl~~~~-~~D~I~vld~G~l~~~g~~~~L  541 (559)
T COG4988         475 ---ASLLLLDEPTAHLDAETEQIILQALQELA------KQKTVLVITHRLEDAA-DADRIVVLDNGRLVEQGTHEEL  541 (559)
T ss_pred             ---CCEEEecCCccCCCHhHHHHHHHHHHHHH------hCCeEEEEEcChHHHh-cCCEEEEecCCceeccCCHHHH
Confidence               48999999999999999999999999883      5699999999997776 7999999999999998875443

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=1.1e-32  Score=312.39  Aligned_cols=204  Identities=22%  Similarity=0.288  Sum_probs=160.3

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++||++.|.  + +.++++|+||++++      +|||||  |||||      .++|+|++ |++|+|+++|.++.. +
T Consensus       350 i~~~~vsf~~~--~-~~~vL~~i~l~i~~G~~vaIvG~SGs--GKSTL------~~lL~g~~-p~~G~I~i~g~~i~~~~  417 (588)
T PRK11174        350 IEAEDLEILSP--D-GKTLAGPLNFTLPAGQRIALVGPSGA--GKTSL------LNALLGFL-PYQGSLKINGIELRELD  417 (588)
T ss_pred             EEEEeeEEecc--C-CCeeeeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCC-CCCcEEEECCEecccCC
Confidence            55899987542  1 35699999999988      999999  56655      57999999 899999999999865 4


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHH-----HHHHHHHc--CCCcccCCccccCChHHHhhh
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIGDL--GIPHKRTSLANTLSGGMQRKL  195 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LSgG~~qr~  195 (601)
                      ...+|+.||||||+|.+|. -|++||+.++..  ..+.++..+.     +.+.++.+  |+..........||||||||+
T Consensus       418 ~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~~--~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRi  494 (588)
T PRK11174        418 PESWRKHLSWVGQNPQLPH-GTLRDNVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRL  494 (588)
T ss_pred             HHHHHhheEEecCCCcCCC-cCHHHHhhcCCC--CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHH
Confidence            5678899999999999985 599999988632  2333332221     22334444  444444555678999999999


Q ss_pred             hchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhcc
Q psy7365         196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSF  275 (601)
Q Consensus       196 ~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  275 (601)
                      +||||++.|                                                                       
T Consensus       495 alARAll~~-----------------------------------------------------------------------  503 (588)
T PRK11174        495 ALARALLQP-----------------------------------------------------------------------  503 (588)
T ss_pred             HHHHHHhcC-----------------------------------------------------------------------
Confidence            876654433                                                                       


Q ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       276 ~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                        |++||||||||+||+.+.+.+.+.|.++      .+++|+|++||+++.+. .||+|+++++|+++..|+.
T Consensus       504 --~~IliLDE~TSaLD~~te~~i~~~l~~~------~~~~TvIiItHrl~~i~-~aD~Iivl~~G~i~e~G~~  567 (588)
T PRK11174        504 --CQLLLLDEPTASLDAHSEQLVMQALNAA------SRRQTTLMVTHQLEDLA-QWDQIWVMQDGQIVQQGDY  567 (588)
T ss_pred             --CCEEEEeCCccCCCHHHHHHHHHHHHHH------hCCCEEEEEecChHHHH-hCCEEEEEeCCeEeecCCH
Confidence              4899999999999999999999999886      25899999999997765 6999999999999988764

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=3.5e-32  Score=269.86  Aligned_cols=187  Identities=21%  Similarity=0.287  Sum_probs=157.1

Q ss_pred             EEEecchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCcc-------cccccccCCCCccc
Q psy7365         318 ILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSAP-------QKSYIGYCPQFDAL  383 (601)
Q Consensus       318 I~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~~-------~~~~ig~v~Q~~~l  383 (601)
                      +-+-+++++...-++.+++++.-.   +|+++++       +++.+..++.+.++....       .+++|||+||+..|
T Consensus        18 ~~~L~~v~l~i~~Ge~vaI~GpSG---SGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nL   94 (226)
T COG1136          18 VEALKDVNLEIEAGEFVAIVGPSG---SGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL   94 (226)
T ss_pred             eEecccceEEEcCCCEEEEECCCC---CCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCC
Confidence            334499999999999999998632   5655543       344455455554543221       35679999999999


Q ss_pred             CCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccc-cccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCC
Q psy7365         384 NDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSD-REVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD  462 (601)
Q Consensus       384 ~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~-~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD  462 (601)
                      .+.+||.||+.+...+.+.+.....++++++++.+||.+..+ ++|.+|||||||||+|||||+++|++++.||||..||
T Consensus        95 l~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD  174 (226)
T COG1136          95 LPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLD  174 (226)
T ss_pred             CCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCC
Confidence            999999999999887777765556678899999999997666 8899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEE
Q psy7365         463 PGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQF  508 (601)
Q Consensus       463 ~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~i  508 (601)
                      ..+.+++++++++++++ |+|||++|||.+.+. +|||++.|++|++
T Consensus       175 ~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~  220 (226)
T COG1136         175 SKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKI  220 (226)
T ss_pred             hHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCee
Confidence            99999999999999866 999999999988877 7999999999984

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4e-32  Score=288.65  Aligned_cols=196  Identities=22%  Similarity=0.341  Sum_probs=166.0

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc------ccccccccCCCCcccCCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA------PQKSYIGYCPQFDALNDRLT  388 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~------~~~~~ig~v~Q~~~l~~~lT  388 (601)
                      +++++...-++.+++++...   .|++++++       +..|..++.+.++...      ..++++||+||++.+++.+|
T Consensus        22 ~~vsl~i~~Gei~~iiG~nG---sGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~t   98 (343)
T PRK11153         22 NNVSLHIPAGEIFGVIGASG---AGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRT   98 (343)
T ss_pred             EeeEEEEcCCCEEEEECCCC---CcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCc
Confidence            89999999999999998522   45555433       3334444444443221      12567999999999999999


Q ss_pred             HHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHH
Q psy7365         389 PREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRF  468 (601)
Q Consensus       389 v~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~  468 (601)
                      +.||+.+....++.+..+..+++.++++.++|.+..++++.+||||||||++||+||+++|++|||||||+|||+.++..
T Consensus        99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~  178 (343)
T PRK11153         99 VFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS  178 (343)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            99999987766666655566778999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         469 LWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       469 i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      ++++|++++++ |+|||++||+++++..+|||+++|++|+++..|+++++...
T Consensus       179 l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~  231 (343)
T PRK11153        179 ILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH  231 (343)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            99999999765 89999999999999999999999999999999999998654

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.98  E-value=2.3e-32  Score=315.18  Aligned_cols=200  Identities=25%  Similarity=0.309  Sum_probs=163.0

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++||++.|+.  .+.++++|+||++++      +|||||  |||||      .++|+|+++|++|+|.+||.++.. +
T Consensus       452 I~~~nvsf~Y~~--~~~~vL~~isl~i~~Ge~vaIvG~sGs--GKSTL------lklL~gl~~p~~G~I~idg~~i~~~~  521 (686)
T TIGR03797       452 IEVDRVTFRYRP--DGPLILDDVSLQIEPGEFVAIVGPSGS--GKSTL------LRLLLGFETPESGSVFYDGQDLAGLD  521 (686)
T ss_pred             EEEEEEEEEcCC--CCccceeeeEEEECCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCCEEEECCEEcCcCC
Confidence            459999999753  346799999999988      999999  56665      579999999999999999999975 5


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCccc-----------CCccccCChHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKR-----------TSLANTLSGGM  191 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG~  191 (601)
                      ...+|+.+|||||+|.+|. -|++||+.++..   .+.    +++.++++..|+.+..           ......|||||
T Consensus       522 ~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~~---~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQ  593 (686)
T TIGR03797       522 VQAVRRQLGVVLQNGRLMS-GSIFENIAGGAP---LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQ  593 (686)
T ss_pred             HHHHHhccEEEccCCccCc-ccHHHHHhcCCC---CCH----HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHH
Confidence            6678999999999999985 599999987632   232    3455666666655432           23346799999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||+++||||+++                                                                   
T Consensus       594 rQRialARAll~~-------------------------------------------------------------------  606 (686)
T TIGR03797       594 RQRLLIARALVRK-------------------------------------------------------------------  606 (686)
T ss_pred             HHHHHHHHHHhcC-------------------------------------------------------------------
Confidence            9999876654433                                                                   


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                            |+++|||||||+||+.+.+.+.+.|+++        ++|+|++||+++.+. .||+|++|++|+++..|+..
T Consensus       607 ------p~iLiLDEpTS~LD~~te~~i~~~L~~~--------~~T~IiItHr~~~i~-~~D~Iivl~~G~iv~~G~~~  669 (686)
T TIGR03797       607 ------PRILLFDEATSALDNRTQAIVSESLERL--------KVTRIVIAHRLSTIR-NADRIYVLDAGRVVQQGTYD  669 (686)
T ss_pred             ------CCEEEEeCCccCCCHHHHHHHHHHHHHh--------CCeEEEEecChHHHH-cCCEEEEEECCEEEEECCHH
Confidence                  4899999999999999999999998764        579999999998875 59999999999999888643

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.98  E-value=1.5e-32  Score=280.56  Aligned_cols=205  Identities=19%  Similarity=0.255  Sum_probs=161.2

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      ..++++++.|++.  ..++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++.. +
T Consensus        20 i~~~~l~~~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~~~~G~i~i~g~~i~~~~   89 (257)
T cd03288          20 IKIHDLCVRYENN--LKPVLKHVKAYIKPGQKVGICGRTGS--GKSSL------SLAFFRMVDIFDGKIVIDGIDISKLP   89 (257)
T ss_pred             EEEEEEEEEeCCC--CCcceeEEEEEEcCCCEEEEECCCCC--CHHHH------HHHHHcccCCCCCeEEECCEEhhhCC
Confidence            4589999998642  24599999999988      999999  56665      579999999999999999998754 3


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHH-----HHHHHHHHHc--CCCcccCCccccCChHHHhhh
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQ-----LEISNMIGDL--GIPHKRTSLANTLSGGMQRKL  195 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qr~  195 (601)
                      ....++.+||+||++.+|+ .|++||+.+...   .......     ..+.+.++.+  |++...++.+.+|||||+||+
T Consensus        90 ~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl  165 (257)
T cd03288          90 LHTLRSRLSIILQDPILFS-GSIRFNLDPECK---CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLF  165 (257)
T ss_pred             HHHHhhhEEEECCCCcccc-cHHHHhcCcCCC---CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHH
Confidence            4456788999999998876 599999854311   1111111     1234555555  677777788899999999999


Q ss_pred             hchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhcc
Q psy7365         196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSF  275 (601)
Q Consensus       196 ~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  275 (601)
                      ++|||+                                      +.+                                 
T Consensus       166 ~laral--------------------------------------~~~---------------------------------  174 (257)
T cd03288         166 CLARAF--------------------------------------VRK---------------------------------  174 (257)
T ss_pred             HHHHHH--------------------------------------hcC---------------------------------
Confidence            754432                                      232                                 


Q ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       276 ~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                        |+++||||||+|||+.++..+++++.++     . ++.|+|++||+++++.. |||+++|.+|+++..++.
T Consensus       175 --p~llllDEPt~gLD~~~~~~l~~~l~~~-----~-~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~~g~~  238 (257)
T cd03288         175 --SSILIMDEATASIDMATENILQKVVMTA-----F-ADRTVVTIAHRVSTILD-ADLVLVLSRGILVECDTP  238 (257)
T ss_pred             --CCEEEEeCCccCCCHHHHHHHHHHHHHh-----c-CCCEEEEEecChHHHHh-CCEEEEEECCEEEEeCCH
Confidence              5899999999999999999999999876     2 47999999999999985 999999999999877654

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.98  E-value=4.5e-32  Score=273.04  Aligned_cols=195  Identities=27%  Similarity=0.345  Sum_probs=161.2

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC------cccccccccCCCCcccCCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS------APQKSYIGYCPQFDALNDRLT  388 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~------~~~~~~ig~v~Q~~~l~~~lT  388 (601)
                      +++++-..-++.+++++...   .|++++++       +..|..++.+.+...      ...++.+||+||++.+++.+|
T Consensus        17 ~~vs~~i~~Ge~~~l~G~nG---sGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   93 (235)
T cd03261          17 KGVDLDVRRGEILAIIGPSG---SGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLT   93 (235)
T ss_pred             eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCc
Confidence            89999999999999997522   45555432       233444333433321      123567999999999999999


Q ss_pred             HHHHHHHhHHhc-CCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHH
Q psy7365         389 PREHLEFYSRVR-NLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARR  467 (601)
Q Consensus       389 v~E~L~~~~~~~-g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~  467 (601)
                      +.||+.+....+ +.+..+..+++.++++.++|.+..++++.+|||||||||+||+||+.+|++|||||||+|||+.++.
T Consensus        94 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~  173 (235)
T cd03261          94 VFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASG  173 (235)
T ss_pred             HHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence            999998865433 3344445567889999999998889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         468 FLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       468 ~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      .++++|++++++ |+|||++|||++++..+|||+++|++|++++.|+++++..
T Consensus       174 ~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  226 (235)
T cd03261         174 VIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA  226 (235)
T ss_pred             HHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence            999999999774 8999999999999999999999999999999999988753

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.98  E-value=1.7e-32  Score=304.55  Aligned_cols=210  Identities=20%  Similarity=0.275  Sum_probs=163.9

Q ss_pred             chhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCC-CeeEEEEccccC
Q psy7365          47 AYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPV-SSGTAKIYDHDI  119 (601)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~-~~G~v~~~g~~~  119 (601)
                      .++..++++++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++| ++|+|+++|+++
T Consensus       258 ~~~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~i~G~NGs--GKSTL------l~~l~G~~~~~~~G~i~~~g~~~  325 (490)
T PRK10938        258 EPRIVLNNGVVSYND----RPILHNLSWQVNPGEHWQIVGPNGA--GKSTL------LSLITGDHPQGYSNDLTLFGRRR  325 (490)
T ss_pred             CceEEEeceEEEECC----eeEEeeceEEEcCCCEEEEECCCCC--CHHHH------HHHHcCCCCcccCCeEEEecccC
Confidence            345679999999864    3489999999988      999999  56665      6799999886 799999999876


Q ss_pred             CC--chHHhcccEEEEccCCCCCC--CCCHHHHHHHhHh----hcCCChHHHHHHHHHHHHHcCCCc-ccCCccccCChH
Q psy7365         120 RT--DMTTIRRSLGVCPQYNALFD--KLTVEEHMWFYSQ----LKQVPKDLAQLEISNMIGDLGIPH-KRTSLANTLSGG  190 (601)
Q Consensus       120 ~~--~~~~~~~~ig~v~Q~~~~~~--~~tv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG  190 (601)
                      ..  .....++.+||+||++.+++  ..++.+++.++..    .++......++++.++++.+||.+ ..++++.+||||
T Consensus       326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG  405 (490)
T PRK10938        326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWG  405 (490)
T ss_pred             CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHH
Confidence            32  22335678999999986544  3567666654321    111112334567889999999997 889999999999


Q ss_pred             HHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHH
Q psy7365         191 MQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVL  270 (601)
Q Consensus       191 ~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~  270 (601)
                      |||||++||||                                      +.+                            
T Consensus       406 q~qrv~la~al--------------------------------------~~~----------------------------  419 (490)
T PRK10938        406 QQRLALIVRAL--------------------------------------VKH----------------------------  419 (490)
T ss_pred             HHHHHHHHHHH--------------------------------------hcC----------------------------
Confidence            99999865432                                      222                            


Q ss_pred             HhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHh-cCCEEEEecCCccccc
Q psy7365         271 FAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADL-LGDRIAIIAAGKLQCC  345 (601)
Q Consensus       271 ~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~-l~Drv~vL~~GkIv~~  345 (601)
                             |++|||||||+|||+.+++.++++|+++.    +..+.|||++|||++++.. +||++++|.+|+++..
T Consensus       420 -------p~lllLDEPt~gLD~~~~~~l~~~L~~l~----~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~  484 (490)
T PRK10938        420 -------PTLLILDEPLQGLDPLNRQLVRRFVDVLI----SEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY  484 (490)
T ss_pred             -------CCEEEEcCccccCCHHHHHHHHHHHHHHH----hcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence                   58999999999999999999999999983    2223579999999999987 6999999999998654

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.98  E-value=4.6e-32  Score=290.77  Aligned_cols=196  Identities=20%  Similarity=0.331  Sum_probs=165.7

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-cccccccccCCCCcccCCCCCHHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-APQKSYIGYCPQFDALNDRLTPREHL  393 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-~~~~~~ig~v~Q~~~l~~~lTv~E~L  393 (601)
                      +++++...-++.+++++...   +|++++++       +..|+.++.+.++.. .+.++.+||+||++.+|+++||+||+
T Consensus        31 ~~vsl~i~~Ge~~~LlGpsG---sGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi  107 (375)
T PRK09452         31 SNLDLTINNGEFLTLLGPSG---CGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENV  107 (375)
T ss_pred             eeeEEEEeCCCEEEEECCCC---CcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHH
Confidence            77788888889999997522   55555443       233444444444322 22357799999999999999999999


Q ss_pred             HHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHH
Q psy7365         394 EFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCI  473 (601)
Q Consensus       394 ~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL  473 (601)
                      .|....++.+..+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+++.|
T Consensus       108 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L  187 (375)
T PRK09452        108 AFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNEL  187 (375)
T ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence            99776666665566678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         474 ERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       474 ~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      +++.++ |.|+|++|||++|+..+||||++|++|+++..|+++++..+
T Consensus       188 ~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~  235 (375)
T PRK09452        188 KALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE  235 (375)
T ss_pred             HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            998765 99999999999999999999999999999999999998653

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=5.2e-32  Score=290.76  Aligned_cols=196  Identities=22%  Similarity=0.375  Sum_probs=166.1

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-cccccccccCCCCcccCCCCCHHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-APQKSYIGYCPQFDALNDRLTPREHL  393 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-~~~~~~ig~v~Q~~~l~~~lTv~E~L  393 (601)
                      +++++...-++.+++++...   +|++++++       +..|..++.+.++.. .+.++.+||+||++.+|+++||.||+
T Consensus        36 ~~vsl~i~~Ge~~~llGpsG---sGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi  112 (377)
T PRK11607         36 DDVSLTIYKGEIFALLGASG---CGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNI  112 (377)
T ss_pred             eeeEEEEcCCCEEEEECCCC---CcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHH
Confidence            78888888899999997522   55555433       233444444433322 23467899999999999999999999


Q ss_pred             HHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHH
Q psy7365         394 EFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCI  473 (601)
Q Consensus       394 ~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL  473 (601)
                      .|..+.++.+..+.++++.++++.++|.++.++++.+|||||||||+|||||+.+|++|+|||||+|||+..+..+++.|
T Consensus       113 ~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l  192 (377)
T PRK11607        113 AFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEV  192 (377)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            99876666666667778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         474 ERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       474 ~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      +++.++ |.|+|++|||++|+..+|||+++|++|+++..|+++++..+
T Consensus       193 ~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~  240 (377)
T PRK11607        193 VDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH  240 (377)
T ss_pred             HHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence            998654 99999999999999999999999999999999999998653

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.98  E-value=4.2e-32  Score=275.86  Aligned_cols=175  Identities=22%  Similarity=0.255  Sum_probs=145.0

Q ss_pred             cceeecceEEeec-----------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEc
Q psy7365          66 SYGISDTSLEEQP-----------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCP  134 (601)
Q Consensus        66 ~~~~~~~~~~~~~-----------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~  134 (601)
                      .+.++|++|++.+           +|||||  |||||      .++|+|+++|++|+|.++|.           .++|+|
T Consensus         7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGs--GKSTL------lk~L~G~~~p~~G~i~~~g~-----------~i~~~~   67 (246)
T cd03237           7 KKTLGEFTLEVEGGSISESEVIGILGPNGI--GKTTF------IKMLAGVLKPDEGDIEIELD-----------TVSYKP   67 (246)
T ss_pred             ccccCcEEEEEecCCcCCCCEEEEECCCCC--CHHHH------HHHHhCCCcCCCCeEEECCc-----------eEEEec
Confidence            3477888998863           999999  56665      57999999999999999884           589999


Q ss_pred             cCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHh
Q psy7365         135 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFM  214 (601)
Q Consensus       135 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~  214 (601)
                      |++..++..||.|++.+.....+..    .....++++.+|+.+..++++.+||||||||+++|++|             
T Consensus        68 q~~~~~~~~tv~e~l~~~~~~~~~~----~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL-------------  130 (246)
T cd03237          68 QYIKADYEGTVRDLLSSITKDFYTH----PYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACL-------------  130 (246)
T ss_pred             ccccCCCCCCHHHHHHHHhhhcccc----HHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHH-------------
Confidence            9998888899999997654332211    23457889999999989999999999999999854432             


Q ss_pred             hhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHH
Q psy7365         215 NAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYS  294 (601)
Q Consensus       215 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~  294 (601)
                                               +.+                                   |+++||||||++||+.+
T Consensus       131 -------------------------~~~-----------------------------------p~llllDEPt~~LD~~~  150 (246)
T cd03237         131 -------------------------SKD-----------------------------------ADIYLLDEPSAYLDVEQ  150 (246)
T ss_pred             -------------------------hcC-----------------------------------CCEEEEeCCcccCCHHH
Confidence                                     222                                   58999999999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCC
Q psy7365         295 RRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG  340 (601)
Q Consensus       295 ~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~G  340 (601)
                      +..++++|+++.    +..|+|||++||+++++..+||++++|.++
T Consensus       151 ~~~l~~~l~~~~----~~~~~tiiivsHd~~~~~~~~d~i~~l~~~  192 (246)
T cd03237         151 RLMASKVIRRFA----ENNEKTAFVVEHDIIMIDYLADRLIVFEGE  192 (246)
T ss_pred             HHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEcCC
Confidence            999999999873    234899999999999999999999999653

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.98  E-value=5.4e-32  Score=288.48  Aligned_cols=201  Identities=20%  Similarity=0.318  Sum_probs=167.0

Q ss_pred             CCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc-ccccccccCCCCcccC
Q psy7365         313 SGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA-PQKSYIGYCPQFDALN  384 (601)
Q Consensus       313 ~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~-~~~~~ig~v~Q~~~l~  384 (601)
                      .+++++   +++++...-++.+++++...   +|++++++       +..|+.++.+.++... ..++.+||+||++.+|
T Consensus        13 ~~~~~l---~~isl~i~~Ge~~~llGpsG---sGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~   86 (353)
T PRK10851         13 GRTQVL---NDISLDIPSGQMVALLGPSG---SGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALF   86 (353)
T ss_pred             CCeEEE---EEeEEEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccC
Confidence            344554   88888888999999997522   45555432       3334444444443222 2356799999999999


Q ss_pred             CCCCHHHHHHHhHHhc----CCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCC
Q psy7365         385 DRLTPREHLEFYSRVR----NLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG  460 (601)
Q Consensus       385 ~~lTv~E~L~~~~~~~----g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsG  460 (601)
                      +.+||+||+.|....+    +.+..+..+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus        87 p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~  166 (353)
T PRK10851         87 RHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGA  166 (353)
T ss_pred             CCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence            9999999999876542    334455667899999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         461 MDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       461 LD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ||+.++..+++.|+++.++ |+|+|++|||++++..+||||++|++|+++..|+++++..
T Consensus       167 LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~  226 (353)
T PRK10851        167 LDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR  226 (353)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            9999999999999999876 8999999999999999999999999999999999999854

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.98  E-value=5.8e-32  Score=259.14  Aligned_cols=205  Identities=24%  Similarity=0.353  Sum_probs=174.0

Q ss_pred             cCCcEEEEEecchhHHHhcCCEEEEecC---CccccccC-ccccccccccccccccccCCccc----ccccccCCCCccc
Q psy7365         312 LSGRTVILTTHYMDEADLLGDRIAIIAA---GKLQCCGS-SVFLKNSFARGYYLSLDMKSAPQ----KSYIGYCPQFDAL  383 (601)
Q Consensus       312 ~~G~TVI~~tHdl~~~~~l~Drv~vL~~---GkIv~~G~-~~lLk~~~g~g~~igld~~~~~~----~~~ig~v~Q~~~l  383 (601)
                      +.++.|+   +++++-..-++.|.+++.   ||..+..- .-+.++..++....+.|+...+.    |..|||+||+++.
T Consensus        14 y~kr~Vv---~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SI   90 (243)
T COG1137          14 YKKRKVV---NDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASI   90 (243)
T ss_pred             hCCeeee---eeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchH
Confidence            3455665   999999999999999974   44332211 11345556666666777765543    4569999999999


Q ss_pred             CCCCCHHHHHHHhHHhcCCChh--HHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCC
Q psy7365         384 NDRLTPREHLEFYSRVRNLPSV--LLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGM  461 (601)
Q Consensus       384 ~~~lTv~E~L~~~~~~~g~~~~--~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGL  461 (601)
                      |..+||+||+.....++....+  +.+.+++++|+.|++.+.++++..+||||||||+.|||||+.+|+.++||||++|+
T Consensus        91 Fr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGV  170 (243)
T COG1137          91 FRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGV  170 (243)
T ss_pred             hhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCC
Confidence            9999999999988777664433  44456889999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         462 DPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       462 D~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ||.+..++.++|+.|++.|..|+++-|+..|...+|||..+|.+|++.+.|+|+++.+
T Consensus       171 DPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~  228 (243)
T COG1137         171 DPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVN  228 (243)
T ss_pred             CchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999865

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.98  E-value=1.9e-32  Score=309.82  Aligned_cols=202  Identities=24%  Similarity=0.371  Sum_probs=166.5

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++|+++.|+.  ...++++|+||++.+      .|||||  |||||      .++|+|+++|++|+|+++|.++.. +
T Consensus       339 i~~~~v~f~y~~--~~~~il~~i~~~i~~G~~~aivG~sGs--GKSTL------~~ll~g~~~p~~G~I~i~g~~i~~~~  408 (574)
T PRK11160        339 LTLNNVSFTYPD--QPQPVLKGLSLQIKAGEKVALLGRTGC--GKSTL------LQLLTRAWDPQQGEILLNGQPIADYS  408 (574)
T ss_pred             EEEEEEEEECCC--CCCcceecceEEECCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCceEEECCEEhhhCC
Confidence            559999999742  234699999999998      999999  56655      579999999999999999999865 4


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCC----------ccccCChHHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTS----------LANTLSGGMQ  192 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~LSgG~~  192 (601)
                      ....|+.+|||||+|.+|. -|++||+.++..  ..    ..+++.++++.+|+.+..++          ....||||||
T Consensus       409 ~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~~--~~----~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqr  481 (574)
T PRK11160        409 EAALRQAISVVSQRVHLFS-ATLRDNLLLAAP--NA----SDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQ  481 (574)
T ss_pred             HHHHHhheeEEcccchhhc-ccHHHHhhcCCC--cc----CHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHH
Confidence            5667889999999999986 599999987642  12    23456778888888765443          5677999999


Q ss_pred             hhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHh
Q psy7365         193 RKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFA  272 (601)
Q Consensus       193 qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  272 (601)
                      ||+++||+++.|                                                                    
T Consensus       482 qRialARall~~--------------------------------------------------------------------  493 (574)
T PRK11160        482 RRLGIARALLHD--------------------------------------------------------------------  493 (574)
T ss_pred             HHHHHHHHHhcC--------------------------------------------------------------------
Confidence            999866544333                                                                    


Q ss_pred             hccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         273 MSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       273 ~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                           |+++||||||++||+.+...+.+.|.++      .+++|+|++||+++.+. .||++++|++|+++..|+.
T Consensus       494 -----~~ililDE~ts~lD~~t~~~i~~~l~~~------~~~~tviiitHr~~~~~-~~d~i~~l~~G~i~~~g~~  557 (574)
T PRK11160        494 -----APLLLLDEPTEGLDAETERQILELLAEH------AQNKTVLMITHRLTGLE-QFDRICVMDNGQIIEQGTH  557 (574)
T ss_pred             -----CCEEEEeCCcccCCHHHHHHHHHHHHHH------cCCCEEEEEecChhHHH-hCCEEEEEeCCeEEEeCCH
Confidence                 4899999999999999999999999886      25899999999998875 5999999999999887754

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.98  E-value=6e-33  Score=259.14  Aligned_cols=196  Identities=26%  Similarity=0.371  Sum_probs=167.3

Q ss_pred             cccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-chHHhcccEE
Q psy7365          59 RDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DMTTIRRSLG  131 (601)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~~~~~~~ig  131 (601)
                      .++..++...|+++||.+.+      +|||||  |||||      .|+++-+++|++|++++.|+++.+ .++..|..|+
T Consensus         9 ~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~--GKStl------lk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~Vs   80 (223)
T COG4619           9 VGYLAGDAKILNNISLSVRAGEFIAITGPSGC--GKSTL------LKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVS   80 (223)
T ss_pred             HHhhcCCCeeecceeeeecCCceEEEeCCCCc--cHHHH------HHHHHhccCCCCceEEEcCccccccChHHHHHHHH
Confidence            44666778899999999988      999999  57665      679999999999999999999976 5778899999


Q ss_pred             EEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcc-cCCccccCChHHHhhhhchhhhcchhhHHHH
Q psy7365         132 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHK-RTSLANTLSGGMQRKLDNVKVWFNNKAWIAA  210 (601)
Q Consensus       132 ~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~  210 (601)
                      ||.|.|.+|++ ||++|+.|..+.+.-..  .+.+...+|+++++.+. .++.+.+||||||||++++            
T Consensus        81 Y~~Q~paLfg~-tVeDNlifP~~~r~rr~--dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAli------------  145 (223)
T COG4619          81 YCAQTPALFGD-TVEDNLIFPWQIRNRRP--DRAAALDLLARFALPDSILTKNITELSGGEKQRIALI------------  145 (223)
T ss_pred             HHHcCcccccc-chhhccccchHHhccCC--ChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHH------------
Confidence            99999999964 99999999887765332  23456789999999864 7999999999999997643            


Q ss_pred             HHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCC
Q psy7365         211 VSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGV  290 (601)
Q Consensus       211 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgL  290 (601)
                                  |.+                                                 ...|++|+||||||+|
T Consensus       146 ------------R~L-------------------------------------------------q~~P~ILLLDE~TsAL  164 (223)
T COG4619         146 ------------RNL-------------------------------------------------QFMPKILLLDEITSAL  164 (223)
T ss_pred             ------------HHh-------------------------------------------------hcCCceEEecCchhhc
Confidence                        321                                                 1237999999999999


Q ss_pred             CHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcc
Q psy7365         291 DPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL  342 (601)
Q Consensus       291 D~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkI  342 (601)
                      |+...+.+-++|.++.    ..+...++++|||-+++.+.+|+++-+.+|++
T Consensus       165 D~~nkr~ie~mi~~~v----~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~  212 (223)
T COG4619         165 DESNKRNIEEMIHRYV----REQNVAVLWITHDKDQAIRHADKVITLQPGHA  212 (223)
T ss_pred             ChhhHHHHHHHHHHHh----hhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence            9999999999999985    34688999999999999999999999998874

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.98  E-value=5.6e-32  Score=290.14  Aligned_cols=201  Identities=22%  Similarity=0.350  Sum_probs=167.7

Q ss_pred             CCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc-ccccccccCCCCcccC
Q psy7365         313 SGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA-PQKSYIGYCPQFDALN  384 (601)
Q Consensus       313 ~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~-~~~~~ig~v~Q~~~l~  384 (601)
                      .+++++   +++++...-++.+++++...   +|++++++       +..|..++.+.+.... ..++.+||+||++.+|
T Consensus        14 ~~~~vl---~~vsl~i~~Ge~~~l~G~nG---sGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~   87 (369)
T PRK11000         14 GDVVIS---KDINLDIHEGEFVVFVGPSG---CGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALY   87 (369)
T ss_pred             CCeEEE---eeeEEEEcCCCEEEEECCCC---CcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccC
Confidence            344544   88898888999999998532   55555443       2334443434333221 2346799999999999


Q ss_pred             CCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHH
Q psy7365         385 DRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG  464 (601)
Q Consensus       385 ~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~  464 (601)
                      +.+||+||+.|....++.+..+.++++.++++.++|.+..++++.+|||||||||+||+||+.+|++|||||||+|||+.
T Consensus        88 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~  167 (369)
T PRK11000         88 PHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA  167 (369)
T ss_pred             CCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence            99999999998776666555556678999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         465 ARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       465 ~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      +++.+++.|+++.++ |+|+|++|||++++..+|||+++|++|+++..|+++++..
T Consensus       168 ~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~  223 (369)
T PRK11000        168 LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH  223 (369)
T ss_pred             HHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            999999999998765 8999999999999999999999999999999999998854

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.98  E-value=1.2e-32  Score=314.13  Aligned_cols=209  Identities=28%  Similarity=0.391  Sum_probs=166.4

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++|+++.|+..+  .++|+|+||++++      +|+|||  |||||      .|+|.|+++|++|+|++||.|+.. +
T Consensus       472 I~~~nvsf~y~~~~--~~vL~~isL~I~~Ge~vaIvG~SGs--GKSTL------~KLL~gly~p~~G~I~~dg~dl~~i~  541 (709)
T COG2274         472 IEFENVSFRYGPDD--PPVLEDLSLEIPPGEKVAIVGRSGS--GKSTL------LKLLLGLYKPQQGRILLDGVDLNDID  541 (709)
T ss_pred             EEEEEEEEEeCCCC--cchhhceeEEeCCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCceEEECCEeHHhcC
Confidence            34999999986543  3799999999998      999999  56655      479999999999999999999864 6


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHH-----HHHHHHHc--CCCcccCCccccCChHHHhhh
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIGDL--GIPHKRTSLANTLSGGMQRKL  195 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LSgG~~qr~  195 (601)
                      ...+|+.||||+|++.+| .-|++||+.++....  +.+++.+.     +.+.+..+  |...........||||||||+
T Consensus       542 ~~~lR~~ig~V~Q~~~Lf-~gSI~eNi~l~~p~~--~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrl  618 (709)
T COG2274         542 LASLRRQVGYVLQDPFLF-SGSIRENIALGNPEA--TDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRL  618 (709)
T ss_pred             HHHHHhheeEEcccchhh-cCcHHHHHhcCCCCC--CHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHH
Confidence            778999999999999888 569999999865432  22222221     22334433  334445566788999999999


Q ss_pred             hchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhcc
Q psy7365         196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSF  275 (601)
Q Consensus       196 ~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  275 (601)
                      +||||++                                      ++                                 
T Consensus       619 alARaLl--------------------------------------~~---------------------------------  627 (709)
T COG2274         619 ALARALL--------------------------------------SK---------------------------------  627 (709)
T ss_pred             HHHHHhc--------------------------------------cC---------------------------------
Confidence            8655433                                      33                                 


Q ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc
Q psy7365         276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  351 (601)
Q Consensus       276 ~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL  351 (601)
                        |++||||||||+||+.+.+.+.+.|.++      ..|+|+|+++|+.+... .||||++|++|+++.+|+...+
T Consensus       628 --P~ILlLDEaTSaLD~~sE~~I~~~L~~~------~~~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv~~gs~~el  694 (709)
T COG2274         628 --PKILLLDEATSALDPETEAIILQNLLQI------LQGRTVIIIAHRLSTIR-SADRIIVLDQGKIVEQGSHEEL  694 (709)
T ss_pred             --CCEEEEeCcccccCHhHHHHHHHHHHHH------hcCCeEEEEEccchHhh-hccEEEEccCCceeccCCHHHH
Confidence              4899999999999999999999999987      36899999999987765 8999999999999999875443

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.98  E-value=3.5e-32  Score=267.77  Aligned_cols=175  Identities=23%  Similarity=0.360  Sum_probs=145.1

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCC--CCCCeeEEEEccccCCCc-
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGM--LPVSSGTAKIYDHDIRTD-  122 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl--~~~~~G~v~~~g~~~~~~-  122 (601)
                      +++|++.|++    .++++|+||++.+      +|||||  |||||      .++|+|+  ++|++|+|.++|.++... 
T Consensus         3 ~~~l~~~~~~----~~~l~~is~~i~~Ge~~~i~G~nGs--GKStL------l~~l~G~~~~~p~~G~i~~~g~~~~~~~   70 (200)
T cd03217           3 IKDLHVSVGG----KEILKGVNLTIKKGEVHALMGPNGS--GKSTL------AKTIMGHPKYEVTEGEILFKGEDITDLP   70 (200)
T ss_pred             EEEEEEEeCC----EEeeeccceEECCCcEEEEECCCCC--CHHHH------HHHHhCCCcCCCCccEEEECCEECCcCC
Confidence            7899999863    4599999999988      999999  56665      6799999  589999999999988642 


Q ss_pred             hHH-hcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhh
Q psy7365         123 MTT-IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVW  201 (601)
Q Consensus       123 ~~~-~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~  201 (601)
                      ... .+.+++|+||++.+|+.+++.+++                               ++...+|||||+||+++||+|
T Consensus        71 ~~~~~~~~i~~v~q~~~~~~~~~~~~~l-------------------------------~~~~~~LS~G~~qrv~laral  119 (200)
T cd03217          71 PEERARLGIFLAFQYPPEIPGVKNADFL-------------------------------RYVNEGFSGGEKKRNEILQLL  119 (200)
T ss_pred             HHHHhhCcEEEeecChhhccCccHHHHH-------------------------------hhccccCCHHHHHHHHHHHHH
Confidence            222 345699999999999999988876                               122368999999999865433


Q ss_pred             cchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEE
Q psy7365         202 FNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTV  281 (601)
Q Consensus       202 ~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~l  281 (601)
                      +                                      .                                   +|+++
T Consensus       120 ~--------------------------------------~-----------------------------------~p~il  126 (200)
T cd03217         120 L--------------------------------------L-----------------------------------EPDLA  126 (200)
T ss_pred             h--------------------------------------c-----------------------------------CCCEE
Confidence            2                                      2                                   25899


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHh-cCCEEEEecCCccccccC
Q psy7365         282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADL-LGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       282 iLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~-l~Drv~vL~~GkIv~~G~  347 (601)
                      ||||||+|||+.++..+++.|+++.     ..|+|+|++||+++++.. .||++++|.+|++...+.
T Consensus       127 llDEPt~~LD~~~~~~l~~~L~~~~-----~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~  188 (200)
T cd03217         127 ILDEPDSGLDIDALRLVAEVINKLR-----EEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGD  188 (200)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHH-----HCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEcc
Confidence            9999999999999999999999873     348899999999999988 799999999999887663

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.98  E-value=3.6e-32  Score=307.03  Aligned_cols=208  Identities=27%  Similarity=0.403  Sum_probs=170.0

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++++++.|+.   +.++++|+||.+++      .|||||  ||||+      .++|+|+++|++|+|.+||.++.. +
T Consensus       329 I~f~~vsf~y~~---~~~vl~~is~~i~~Ge~vaiVG~sGs--GKSTl------~~LL~r~~~~~~G~I~idg~dI~~i~  397 (567)
T COG1132         329 IEFENVSFSYPG---KKPVLKDISFSIEPGEKVAIVGPSGS--GKSTL------IKLLLRLYDPTSGEILIDGIDIRDIS  397 (567)
T ss_pred             EEEEEEEEEcCC---CCccccCceEEEcCCCEEEEECCCCC--CHHHH------HHHHhccCCCCCCeEEECCEehhhcC
Confidence            569999999874   45699999999988      899999  56654      579999999999999999999975 5


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHH-----HHHHHHc--CCCcccCCccccCChHHHhhh
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEI-----SNMIGDL--GIPHKRTSLANTLSGGMQRKL  195 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LSgG~~qr~  195 (601)
                      ...+|+.||+|||+|.+|. -|++||+.++...  .+.++..+.+     .+.++.+  |+....+.....||||||||+
T Consensus       398 ~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~--at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrl  474 (567)
T COG1132         398 LDSLRKRIGIVSQDPLLFS-GTIRENIALGRPD--ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRL  474 (567)
T ss_pred             HHHHHHhccEEcccceeec-ccHHHHHhcCCCC--CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHH
Confidence            6678999999999999996 8999999987543  3334443332     3445555  555555666678999999999


Q ss_pred             hchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhcc
Q psy7365         196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSF  275 (601)
Q Consensus       196 ~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  275 (601)
                      ++|||++.|                                                                       
T Consensus       475 aiARall~~-----------------------------------------------------------------------  483 (567)
T COG1132         475 AIARALLRN-----------------------------------------------------------------------  483 (567)
T ss_pred             HHHHHHhcC-----------------------------------------------------------------------
Confidence            876554433                                                                       


Q ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc
Q psy7365         276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  351 (601)
Q Consensus       276 ~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL  351 (601)
                        |+++|||||||+||+.+...+.+.+.++      .+|+|+++++|+++.+.. ||+|++|++|+++..|+...+
T Consensus       484 --~~ILILDEaTSalD~~tE~~I~~~l~~l------~~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~G~h~eL  550 (567)
T COG1132         484 --PPILILDEATSALDTETEALIQDALKKL------LKGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVERGTHEEL  550 (567)
T ss_pred             --CCEEEEeccccccCHHhHHHHHHHHHHH------hcCCEEEEEeccHhHHHh-CCEEEEEECCEEEEecCHHHH
Confidence              4899999999999999999999999876      246899999999988887 999999999999998876543

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.98  E-value=7.2e-32  Score=268.90  Aligned_cols=199  Identities=29%  Similarity=0.445  Sum_probs=163.5

Q ss_pred             CCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC--cccccccccCCCCccc
Q psy7365         313 SGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS--APQKSYIGYCPQFDAL  383 (601)
Q Consensus       313 ~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~--~~~~~~ig~v~Q~~~l  383 (601)
                      .+++++   +++++...-++.+++++...   .|++++++       +..|+.++.+.+...  ...+++++|+||++.+
T Consensus        11 ~~~~il---~~vs~~i~~Ge~~~i~G~nG---sGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~   84 (220)
T cd03265          11 GDFEAV---RGVSFRVRRGEIFGLLGPNG---AGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSV   84 (220)
T ss_pred             CCEEee---eceeEEECCCCEEEEECCCC---CCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccc
Confidence            344544   89999999999999997522   45554432       223333333332211  1234679999999999


Q ss_pred             CCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCH
Q psy7365         384 NDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP  463 (601)
Q Consensus       384 ~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~  463 (601)
                      ++.+|++||+.+....++....+..+++.++++.++|.+..++++.+||||||||++||+|++.+|+++||||||+|||+
T Consensus        85 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~  164 (220)
T cd03265          85 DDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDP  164 (220)
T ss_pred             cccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCH
Confidence            99999999999876666655555566789999999999888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHH
Q psy7365         464 GARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  517 (601)
Q Consensus       464 ~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L  517 (601)
                      .+++.++++|+++.++ |+|||++||+++++..+|||+++|++|+++..|+++++
T Consensus       165 ~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (220)
T cd03265         165 QTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL  219 (220)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence            9999999999999876 89999999999999999999999999999999988765

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.98  E-value=4.9e-32  Score=307.45  Aligned_cols=201  Identities=19%  Similarity=0.300  Sum_probs=163.6

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++++++.|+.   +.++++|+||++++      .|||||  |||||      .++|+|+++|++|+|.+||.++.. +
T Consensus       341 i~~~~v~f~y~~---~~~il~~i~l~i~~Ge~iaIvG~SGs--GKSTL------l~lL~gl~~p~~G~I~idg~~i~~~~  409 (592)
T PRK10790        341 IDIDNVSFAYRD---DNLVLQNINLSVPSRGFVALVGHTGS--GKSTL------ASLLMGYYPLTEGEIRLDGRPLSSLS  409 (592)
T ss_pred             EEEEEEEEEeCC---CCceeeceeEEEcCCCEEEEECCCCC--CHHHH------HHHHhcccCCCCceEEECCEEhhhCC
Confidence            458999999852   24699999999988      999999  56665      579999999999999999999864 4


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCccccCChHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPH-----------KRTSLANTLSGGM  191 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgG~  191 (601)
                      ....++.++||||+|.+|+. |++||+.++.   ..+.    +++.++++.+|+.+           ........|||||
T Consensus       410 ~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~---~~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGq  481 (592)
T PRK10790        410 HSVLRQGVAMVQQDPVVLAD-TFLANVTLGR---DISE----EQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQ  481 (592)
T ss_pred             HHHHHhheEEEccCCccccc-hHHHHHHhCC---CCCH----HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHH
Confidence            56788999999999999976 9999998863   2333    33555666666443           2334456799999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||+++||||+.|                                                                   
T Consensus       482 rQRialARaLl~~-------------------------------------------------------------------  494 (592)
T PRK10790        482 KQLLALARVLVQT-------------------------------------------------------------------  494 (592)
T ss_pred             HHHHHHHHHHHhC-------------------------------------------------------------------
Confidence            9999876654433                                                                   


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                            |+++|||||||+||+.+.+.+.+.|+++.      .++|+|++||+++... .||+|++|++|+++..|+..
T Consensus       495 ------~~illlDEpts~LD~~t~~~i~~~l~~~~------~~~tvIivtHr~~~l~-~~D~ii~l~~G~i~~~G~~~  559 (592)
T PRK10790        495 ------PQILILDEATANIDSGTEQAIQQALAAVR------EHTTLVVIAHRLSTIV-EADTILVLHRGQAVEQGTHQ  559 (592)
T ss_pred             ------CCEEEEeCCcccCCHHHHHHHHHHHHHHh------CCCEEEEEecchHHHH-hCCEEEEEECCEEEEEcCHH
Confidence                  48999999999999999999999998862      4699999999997766 69999999999999887643

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.98  E-value=7.6e-32  Score=268.36  Aligned_cols=192  Identities=19%  Similarity=0.227  Sum_probs=147.3

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc---
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD---  122 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~---  122 (601)
                      +.++.+.|+..   .++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++...   
T Consensus         3 ~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGs--GKSTL------l~~i~G~~~~~~G~i~~~g~~~~~~~~~   71 (218)
T cd03290           3 VTNGYFSWGSG---LATLSNINIRIPTGQLTMIVGQVGC--GKSSL------LLAILGEMQTLEGKVHWSNKNESEPSFE   71 (218)
T ss_pred             eeeeEEecCCC---CcceeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhccCCCCCCeEEECCccccccccc
Confidence            45677776422   4699999999988      999999  56665      6799999999999999999877432   


Q ss_pred             --hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCccccCCh
Q psy7365         123 --MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPH-----------KRTSLANTLSG  189 (601)
Q Consensus       123 --~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSg  189 (601)
                        ....++.+||+||++.+| ..|+.||+.++..   ...    ++..++++.+++.+           ..++++.+|||
T Consensus        72 ~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~  143 (218)
T cd03290          72 ATRSRNRYSVAYAAQKPWLL-NATVEENITFGSP---FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSG  143 (218)
T ss_pred             ccchhhcceEEEEcCCCccc-cccHHHHHhhcCc---CCH----HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCH
Confidence              123456799999999887 6799999987532   111    12334555556543           23567899999


Q ss_pred             HHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHH
Q psy7365         190 GMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTV  269 (601)
Q Consensus       190 G~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~  269 (601)
                      |||||+++||+|+                                      .                            
T Consensus       144 G~~qrv~laral~--------------------------------------~----------------------------  157 (218)
T cd03290         144 GQRQRICVARALY--------------------------------------Q----------------------------  157 (218)
T ss_pred             HHHHHHHHHHHHh--------------------------------------h----------------------------
Confidence            9999998654432                                      2                            


Q ss_pred             HHhhccCCCcEEEEecCCCCCCHHHHHHHHH--HHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCc
Q psy7365         270 LFAMSFVPASTVILDEPTSGVDPYSRRSIWE--LLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK  341 (601)
Q Consensus       270 ~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~--~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~Gk  341 (601)
                             +|+++||||||+|||+.++..+++  ++..+     +..|.|+|++||+++++. .||++++|.+|.
T Consensus       158 -------~p~illlDEPt~~LD~~~~~~l~~~~ll~~~-----~~~~~tii~~sH~~~~~~-~~d~i~~l~~G~  218 (218)
T cd03290         158 -------NTNIVFLDDPFSALDIHLSDHLMQEGILKFL-----QDDKRTLVLVTHKLQYLP-HADWIIAMKDGS  218 (218)
T ss_pred             -------CCCEEEEeCCccccCHHHHHHHHHHHHHHHH-----hcCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence                   258999999999999999999998  55554     235899999999999985 699999998873

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.98  E-value=4.8e-32  Score=260.29  Aligned_cols=162  Identities=31%  Similarity=0.512  Sum_probs=136.4

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-chH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DMT  124 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~~  124 (601)
                      ++++++.|+..  ..++++|+||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++.. +..
T Consensus         3 ~~~l~~~~~~~--~~~~l~~i~~~i~~G~~~~l~G~nGs--GKstL------l~~i~G~~~~~~G~i~~~g~~~~~~~~~   72 (171)
T cd03228           3 FKNVSFSYPGR--PKPVLKDVSLTIKPGEKVAIVGPSGS--GKSTL------LKLLLRLYDPTSGEILIDGVDLRDLDLE   72 (171)
T ss_pred             EEEEEEEcCCC--CcccccceEEEEcCCCEEEEECCCCC--CHHHH------HHHHHcCCCCCCCEEEECCEEhhhcCHH
Confidence            68899988542  13589999999988      999999  56665      679999999999999999998753 334


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcch
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNN  204 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~  204 (601)
                      ..++.++|+||++.+|+ .|+.||+                                     ||||||||+++||+|   
T Consensus        73 ~~~~~i~~~~~~~~~~~-~t~~e~l-------------------------------------LS~G~~~rl~la~al---  111 (171)
T cd03228          73 SLRKNIAYVPQDPFLFS-GTIRENI-------------------------------------LSGGQRQRIAIARAL---  111 (171)
T ss_pred             HHHhhEEEEcCCchhcc-chHHHHh-------------------------------------hCHHHHHHHHHHHHH---
Confidence            45678999999998776 6999987                                     999999999754432   


Q ss_pred             hhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEe
Q psy7365         205 KAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILD  284 (601)
Q Consensus       205 ~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLD  284 (601)
                                                         +.+                                   |+++|||
T Consensus       112 -----------------------------------~~~-----------------------------------p~llllD  121 (171)
T cd03228         112 -----------------------------------LRD-----------------------------------PPILILD  121 (171)
T ss_pred             -----------------------------------hcC-----------------------------------CCEEEEE
Confidence                                               222                                   5899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCc
Q psy7365         285 EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK  341 (601)
Q Consensus       285 EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~Gk  341 (601)
                      |||+|||+.++..++++|.++     . +++|+|++||+++++.. ||++++|.+|+
T Consensus       122 EP~~gLD~~~~~~l~~~l~~~-----~-~~~tii~~sh~~~~~~~-~d~~~~l~~g~  171 (171)
T cd03228         122 EATSALDPETEALILEALRAL-----A-KGKTVIVIAHRLSTIRD-ADRIIVLDDGR  171 (171)
T ss_pred             CCCcCCCHHHHHHHHHHHHHh-----c-CCCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence            999999999999999999987     2 36899999999999987 99999999874

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.97  E-value=7.8e-32  Score=302.97  Aligned_cols=207  Identities=24%  Similarity=0.372  Sum_probs=165.9

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++|+++.|+  +.+.++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. +
T Consensus       317 i~~~~v~~~y~--~~~~~~l~~~~~~i~~G~~~~ivG~sGs--GKSTL------~~ll~g~~~~~~G~i~~~g~~i~~~~  386 (544)
T TIGR01842       317 LSVENVTIVPP--GGKKPTLRGISFRLQAGEALAIIGPSGS--GKSTL------ARLIVGIWPPTSGSVRLDGADLKQWD  386 (544)
T ss_pred             EEEEEEEEEcC--CCCccccccceEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCceEEECCEehhhCC
Confidence            45899999974  2345689999999998      999999  56665      579999999999999999999864 4


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHH-----HHHHHHHHc--CCCcccCCccccCChHHHhhh
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL-----EISNMIGDL--GIPHKRTSLANTLSGGMQRKL  195 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qr~  195 (601)
                      ....++.++|+||+|.+|+. |++||+.++..  ..+.++..+     .+.+.++.+  |+....+....+||||||||+
T Consensus       387 ~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl  463 (544)
T TIGR01842       387 RETFGKHIGYLPQDVELFPG-TVAENIARFGE--NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRI  463 (544)
T ss_pred             HHHHhhheEEecCCcccccc-cHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHH
Confidence            45678899999999999975 99999985432  123333222     234556666  666667778899999999999


Q ss_pred             hchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhcc
Q psy7365         196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSF  275 (601)
Q Consensus       196 ~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  275 (601)
                      ++||||+.+                                                                       
T Consensus       464 ~lARall~~-----------------------------------------------------------------------  472 (544)
T TIGR01842       464 ALARALYGD-----------------------------------------------------------------------  472 (544)
T ss_pred             HHHHHHhcC-----------------------------------------------------------------------
Confidence            876554433                                                                       


Q ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       276 ~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                        |+++||||||++||+.++..+.+.|.++.     ..|+|+|++||+++.. ..||++++|++|+++..|+.
T Consensus       473 --~~ililDEpts~LD~~~~~~i~~~l~~~~-----~~~~tvi~ith~~~~~-~~~d~i~~l~~G~i~~~g~~  537 (544)
T TIGR01842       473 --PKLVVLDEPNSNLDEEGEQALANAIKALK-----ARGITVVVITHRPSLL-GCVDKILVLQDGRIARFGER  537 (544)
T ss_pred             --CCEEEEeCCccccCHHHHHHHHHHHHHHh-----hCCCEEEEEeCCHHHH-HhCCEEEEEECCEEEeeCCH
Confidence              58999999999999999999999998862     2589999999999865 57999999999999877753

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.97  E-value=6.2e-32  Score=266.31  Aligned_cols=188  Identities=26%  Similarity=0.346  Sum_probs=143.4

Q ss_pred             hhcccccccccCCC-ccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365          51 LFESLSENRDKLGI-DSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM  123 (601)
Q Consensus        51 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~  123 (601)
                      .+++|++.|+..+. ..++++++||++.+      +|||||  |||||      .++|+|+++|++|+|.++|       
T Consensus         2 ~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~--GKSTL------l~~i~G~~~~~~G~i~~~g-------   66 (204)
T cd03250           2 SVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGS--GKSSL------LSALLGELEKLSGSVSVPG-------   66 (204)
T ss_pred             EEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCC--CHHHH------HHHHhCcCCCCCCeEEEcC-------
Confidence            37899999864211 13599999999988      999999  56665      5799999999999999998       


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHH-----HHHHHHHc--CCCcccCCccccCChHHHhhhh
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIGDL--GIPHKRTSLANTLSGGMQRKLD  196 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LSgG~~qr~~  196 (601)
                           .+||+||+|.+| ..|+.||+.+....   ..+.....     +.+.++.+  |+....++.+.+||||||||++
T Consensus        67 -----~i~~~~q~~~l~-~~t~~enl~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~  137 (204)
T cd03250          67 -----SIAYVSQEPWIQ-NGTIRENILFGKPF---DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRIS  137 (204)
T ss_pred             -----EEEEEecCchhc-cCcHHHHhccCCCc---CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHH
Confidence                 599999999988 57999999875432   21111110     11222222  3444567778999999999998


Q ss_pred             chhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccC
Q psy7365         197 NVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFV  276 (601)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  276 (601)
                      +||+|+                                      .+                                  
T Consensus       138 laral~--------------------------------------~~----------------------------------  145 (204)
T cd03250         138 LARAVY--------------------------------------SD----------------------------------  145 (204)
T ss_pred             HHHHHh--------------------------------------cC----------------------------------
Confidence            654332                                      22                                  


Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHH-HHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCc
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWEL-LIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK  341 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~-l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~Gk  341 (601)
                       |+++||||||++||+.+++.+++. +.+.     ..+|.|||++||+++++.. ||++++|.+|+
T Consensus       146 -p~llllDEP~~~LD~~~~~~l~~~ll~~~-----~~~~~tvi~~sh~~~~~~~-~d~i~~l~~G~  204 (204)
T cd03250         146 -ADIYLLDDPLSAVDAHVGRHIFENCILGL-----LLNNKTRILVTHQLQLLPH-ADQIVVLDNGR  204 (204)
T ss_pred             -CCEEEEeCccccCCHHHHHHHHHHHHHHh-----ccCCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence             589999999999999999999884 5544     2348999999999999987 99999999884

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.97  E-value=4.8e-32  Score=313.62  Aligned_cols=201  Identities=24%  Similarity=0.336  Sum_probs=160.9

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++|+++.|+.  .+.++++|+||++++      +|||||  |||||      .++|+|+++|++|+|.+||.++.. +
T Consensus       478 I~~~~vsf~y~~--~~~~vL~~isl~i~~Ge~vaIvG~sGs--GKSTL------lklL~gl~~p~~G~I~idg~~i~~~~  547 (710)
T TIGR03796       478 VELRNITFGYSP--LEPPLIENFSLTLQPGQRVALVGGSGS--GKSTI------AKLVAGLYQPWSGEILFDGIPREEIP  547 (710)
T ss_pred             EEEEEEEEecCC--CCCCcccceeEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCcEEEECCEeHHHCC
Confidence            458999999753  345799999999988      999999  56665      579999999999999999999864 4


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCC-----------CcccCCccccCChHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGI-----------PHKRTSLANTLSGGM  191 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgG~  191 (601)
                      ...+|+.+|||||+|.+|. -|++||+.++..  ..+.+    ++.++++..|+           ..........|||||
T Consensus       548 ~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~~--~~~~~----~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQ  620 (710)
T TIGR03796       548 REVLANSVAMVDQDIFLFE-GTVRDNLTLWDP--TIPDA----DLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQ  620 (710)
T ss_pred             HHHHHhheeEEecCChhhh-ccHHHHhhCCCC--CCCHH----HHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHH
Confidence            5678999999999999984 699999987521  23333    33444444443           333344557799999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||+++|||++++                                                                   
T Consensus       621 rQRiaLARall~~-------------------------------------------------------------------  633 (710)
T TIGR03796       621 RQRLEIARALVRN-------------------------------------------------------------------  633 (710)
T ss_pred             HHHHHHHHHHhhC-------------------------------------------------------------------
Confidence            9999876554433                                                                   


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                            |+++|||||||+||+.+...+.+.|++        .++|+|++||+++.+. .||+|++|++|+++..|+..
T Consensus       634 ------p~iliLDEptS~LD~~te~~i~~~l~~--------~~~T~IiitHrl~~i~-~~D~Iivl~~G~i~~~G~~~  696 (710)
T TIGR03796       634 ------PSILILDEATSALDPETEKIIDDNLRR--------RGCTCIIVAHRLSTIR-DCDEIIVLERGKVVQRGTHE  696 (710)
T ss_pred             ------CCEEEEECccccCCHHHHHHHHHHHHh--------cCCEEEEEecCHHHHH-hCCEEEEEeCCEEEEecCHH
Confidence                  589999999999999999999999864        3799999999998876 59999999999999888654

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.97  E-value=1.4e-31  Score=278.34  Aligned_cols=237  Identities=22%  Similarity=0.310  Sum_probs=192.4

Q ss_pred             ccccccCCeeeeecCCCCCCccchhhhhcccccccccCCC-------ccceeecceEEeec------ccCCCCCCCcccc
Q psy7365          25 NIHKISGSEVTYVLPQDPASMGAYVSLFESLSENRDKLGI-------DSYGISDTSLEEQP------LGPSGITLGLHTL   91 (601)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~------~g~~g~~~g~~~~   91 (601)
                      |-.+..-+|..-..|+.+ ..+..+...++|+..|.-.++       ...|++|+||+..+      .|-|||  |||||
T Consensus       253 YTr~Ll~aeP~g~~~p~~-~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGS--GKsTl  329 (534)
T COG4172         253 YTRKLLAAEPSGDPPPLP-EDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGS--GKSTL  329 (534)
T ss_pred             HHHHHHhcCCCCCCCCCC-CCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCC--CcchH
Confidence            334444444443333333 334566668999888853332       26789999999988      888999  67776


Q ss_pred             chhhhHHHhccCCCCCCeeEEEEccccCCC----chHHhcccEEEEccCC--CCCCCCCHHHHHHHhHhhcC--CChHHH
Q psy7365          92 GLEFVSRSMLMGMLPVSSGTAKIYDHDIRT----DMTTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQ--VPKDLA  163 (601)
Q Consensus        92 g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~----~~~~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~~~~~~--~~~~~~  163 (601)
                      |     + .|.+++++. |+|.++|.++..    .+..+|+++-+|||+|  ++-|.+||.+-+.-++..++  .+..+.
T Consensus       330 G-----~-allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR  402 (534)
T COG4172         330 G-----L-ALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAER  402 (534)
T ss_pred             H-----H-HHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHH
Confidence            4     3 778999876 999999999964    3455788999999999  59999999999998887764  567788


Q ss_pred             HHHHHHHHHHcCCCc-ccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcC
Q psy7365         164 QLEISNMIGDLGIPH-KRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINH  242 (601)
Q Consensus       164 ~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~  242 (601)
                      .+++.++|+.+||+. .++++|+++||||+||++||||                                      ++- 
T Consensus       403 ~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARA--------------------------------------liL-  443 (534)
T COG4172         403 DQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARA--------------------------------------LIL-  443 (534)
T ss_pred             HHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHH--------------------------------------Hhc-
Confidence            889999999999985 5899999999999999875443                                      222 


Q ss_pred             CcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEec
Q psy7365         243 PMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH  322 (601)
Q Consensus       243 p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tH  322 (601)
                                                        .|++++||||||+||..-+..+.++|++++    ++.|.+-+|+||
T Consensus       444 ----------------------------------kP~~i~LDEPTSALD~SVQaQvv~LLr~LQ----~k~~LsYLFISH  485 (534)
T COG4172         444 ----------------------------------KPELILLDEPTSALDRSVQAQVLDLLRDLQ----QKHGLSYLFISH  485 (534)
T ss_pred             ----------------------------------CCcEEEecCCchHhhHHHHHHHHHHHHHHH----HHhCCeEEEEec
Confidence                                              368999999999999999999999999995    346899999999


Q ss_pred             chhHHHhcCCEEEEecCCccccccCc
Q psy7365         323 YMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       323 dl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      |+..+..+||+|+||.+|+|+..|..
T Consensus       486 DL~VvrAl~~~viVm~~GkiVE~G~~  511 (534)
T COG4172         486 DLAVVRALCHRVIVMRDGKIVEQGPT  511 (534)
T ss_pred             cHHHHHHhhceEEEEeCCEEeeeCCH
Confidence            99999999999999999999998865

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.97  E-value=3.1e-32  Score=314.44  Aligned_cols=203  Identities=27%  Similarity=0.404  Sum_probs=163.2

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++|+++.|+  +...++++|+||++++      +|||||  |||||      .++|+|+++|++|+|.+||.++.. +
T Consensus       464 I~~~~vsf~Y~--~~~~~vL~~i~l~i~~G~~iaIvG~sGs--GKSTL------lklL~gl~~p~~G~I~idg~~l~~~~  533 (694)
T TIGR03375       464 IEFRNVSFAYP--GQETPALDNVSLTIRPGEKVAIIGRIGS--GKSTL------LKLLLGLYQPTEGSVLLDGVDIRQID  533 (694)
T ss_pred             EEEEEEEEEeC--CCCccceeeeeEEECCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCceEEECCEEhhhCC
Confidence            45999999974  3346799999999988      999999  56665      579999999999999999999865 4


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC-----------cccCCccccCChHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP-----------HKRTSLANTLSGGM  191 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgG~  191 (601)
                      ...+|+.+|||||+|.+|. -|++||+.++..  ..+.+    ++.++++..|+.           .........|||||
T Consensus       534 ~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~~--~~~~~----~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQ  606 (694)
T TIGR03375       534 PADLRRNIGYVPQDPRLFY-GTLRDNIALGAP--YADDE----EILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQ  606 (694)
T ss_pred             HHHHHhccEEECCChhhhh-hhHHHHHhCCCC--CCCHH----HHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHH
Confidence            5678899999999999986 599999987532  12333    344455555543           33344556899999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||+++|||++.+                                                                   
T Consensus       607 rQRlalARall~~-------------------------------------------------------------------  619 (694)
T TIGR03375       607 RQAVALARALLRD-------------------------------------------------------------------  619 (694)
T ss_pred             HHHHHHHHHHhcC-------------------------------------------------------------------
Confidence            9999866554333                                                                   


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                            |+++|||||||+||+.+...+.+.|.++      .+++|+|++||+++.. ..||+|++|++|+++..|+..
T Consensus       620 ------p~iliLDE~Ts~LD~~te~~i~~~l~~~------~~~~T~iiItHrl~~~-~~~D~iivl~~G~i~e~G~~~  684 (694)
T TIGR03375       620 ------PPILLLDEPTSAMDNRSEERFKDRLKRW------LAGKTLVLVTHRTSLL-DLVDRIIVMDNGRIVADGPKD  684 (694)
T ss_pred             ------CCEEEEeCCCCCCCHHHHHHHHHHHHHH------hCCCEEEEEecCHHHH-HhCCEEEEEeCCEEEeeCCHH
Confidence                  5899999999999999999999999886      2479999999999876 579999999999999887643

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.97  E-value=2.7e-31  Score=266.57  Aligned_cols=200  Identities=24%  Similarity=0.362  Sum_probs=163.6

Q ss_pred             CCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcc----cccccccCCCCc
Q psy7365         313 SGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAP----QKSYIGYCPQFD  381 (601)
Q Consensus       313 ~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~----~~~~ig~v~Q~~  381 (601)
                      .++.++   +++++...-++.+++++...   .|++++++       +..|+.++.+.+.....    .++.++|+||++
T Consensus        11 ~~~~~l---~~vs~~i~~Ge~~~l~G~nG---sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~   84 (232)
T cd03218          11 GKRKVV---NGVSLSVKQGEIVGLLGPNG---AGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEA   84 (232)
T ss_pred             CCEEee---ccceeEecCCcEEEEECCCC---CCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCc
Confidence            344544   89999999999999997522   45555432       23344333333322111    235699999999


Q ss_pred             ccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCC
Q psy7365         382 ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGM  461 (601)
Q Consensus       382 ~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGL  461 (601)
                      .+++.+|++||+.+....++.......++++++++.+++.+..++++.+||||||||++||+||+.+|++|||||||+||
T Consensus        85 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L  164 (232)
T cd03218          85 SIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGV  164 (232)
T ss_pred             cccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccC
Confidence            99999999999988655455444444567889999999998899999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHH
Q psy7365         462 DPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  518 (601)
Q Consensus       462 D~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~  518 (601)
                      |+.+++.++++|+++.++|+|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus       165 D~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  221 (232)
T cd03218         165 DPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA  221 (232)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence            999999999999999877999999999999999999999999999999999988764

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.97  E-value=2.7e-32  Score=272.05  Aligned_cols=215  Identities=25%  Similarity=0.316  Sum_probs=183.0

Q ss_pred             cceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEc-cCCC
Q psy7365          66 SYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCP-QYNA  138 (601)
Q Consensus        66 ~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~-Q~~~  138 (601)
                      ..|+.|+||++++      +|||||  ||||     | .|||+|++.|++|.|.++|.++.......-+.+|+|+ |..+
T Consensus        37 ~~AVqdisf~IP~G~ivgflGaNGA--GKST-----t-LKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~q  108 (325)
T COG4586          37 IEAVQDISFEIPKGEIVGFLGANGA--GKST-----T-LKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQ  108 (325)
T ss_pred             hhhhheeeeecCCCcEEEEEcCCCC--cchh-----h-HHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhhe
Confidence            4499999999988      999999  5665     3 6899999999999999999988765555556788776 6667


Q ss_pred             CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhh
Q psy7365         139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAAN  218 (601)
Q Consensus       139 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~  218 (601)
                      +..++.+.+-+..-...|.+|.++-++|.+.+.+-++|+...+.+++.||-|||.|+.+|.                   
T Consensus       109 l~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaa-------------------  169 (325)
T COG4586         109 LWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAA-------------------  169 (325)
T ss_pred             eeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHH-------------------
Confidence            8888889998888888899999999999999999999999999999999999999987421                   


Q ss_pred             hhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHH
Q psy7365         219 NVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSI  298 (601)
Q Consensus       219 ~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l  298 (601)
                                         +|+|+                                   |++|+|||||-|||..++..+
T Consensus       170 -------------------aLLh~-----------------------------------p~VLfLDEpTvgLDV~aq~~i  195 (325)
T COG4586         170 -------------------ALLHP-----------------------------------PKVLFLDEPTVGLDVNAQANI  195 (325)
T ss_pred             -------------------HhcCC-----------------------------------CcEEEecCCccCcchhHHHHH
Confidence                               24454                                   599999999999999999999


Q ss_pred             HHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccccccccccccccccc
Q psy7365         299 WELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDM  365 (601)
Q Consensus       299 ~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~~~g~g~~igld~  365 (601)
                      .+.+++..    ...+.||+++||+++-+..+||||++|+.|+++.+|+-..+...++....++...
T Consensus       196 r~Flke~n----~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~~k~~~~el  258 (325)
T COG4586         196 REFLKEYN----EERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFSVEL  258 (325)
T ss_pred             HHHHHHHH----HhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCCceEEEEEE
Confidence            99999874    3468999999999999999999999999999999987666666666554444433

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.97  E-value=1.1e-31  Score=255.52  Aligned_cols=189  Identities=20%  Similarity=0.247  Sum_probs=168.1

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCcc------cccccccCCCCcccCCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSAP------QKSYIGYCPQFDALNDRLT  388 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~~------~~~~ig~v~Q~~~l~~~lT  388 (601)
                      +++++-...++.+.+.+...   .|+++++       +++.|+.++.+.|+....      .|++||+||||..+.++.|
T Consensus        19 ~~vs~~i~~Gef~fl~GpSG---AGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~t   95 (223)
T COG2884          19 RDVSFHIPKGEFVFLTGPSG---AGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRT   95 (223)
T ss_pred             hCceEeecCceEEEEECCCC---CCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccch
Confidence            88888888999999987532   4555554       345566666666554322      4789999999999999999


Q ss_pred             HHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHH
Q psy7365         389 PREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRF  468 (601)
Q Consensus       389 v~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~  468 (601)
                      |+||+.|.....|.+..+.++++.++|+.+||.+..+..|.+|||||||||+||||++++|++||-||||.+|||....+
T Consensus        96 vyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~  175 (223)
T COG2884          96 VYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWE  175 (223)
T ss_pred             HhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecC
Q psy7365         469 LWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS  513 (601)
Q Consensus       469 i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~  513 (601)
                      +++++.++.+.|+||++.|||.+.+..+--|++.+++|+++.+..
T Consensus       176 im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~  220 (223)
T COG2884         176 IMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES  220 (223)
T ss_pred             HHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence            999999999999999999999999999999999999999987654

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2e-31  Score=287.57  Aligned_cols=201  Identities=19%  Similarity=0.269  Sum_probs=168.0

Q ss_pred             CcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcc-------cccccccCCC
Q psy7365         314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAP-------QKSYIGYCPQ  379 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~-------~~~~ig~v~Q  379 (601)
                      |.++.  -+++++-..-++.+++++...   +|++++++       +..|..++.+.++....       .++++||+||
T Consensus        39 ~~~~~--L~~isl~i~~Gei~~LvG~NG---sGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q  113 (400)
T PRK10070         39 GLSLG--VKDASLAIEEGEIFVIMGLSG---SGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQ  113 (400)
T ss_pred             CCeEE--EEeEEEEEcCCCEEEEECCCC---chHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEEC
Confidence            55533  389999999999999998532   55555443       33344444444433211       1357999999


Q ss_pred             CcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCC
Q psy7365         380 FDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTS  459 (601)
Q Consensus       380 ~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTs  459 (601)
                      ++.+|+.+|+.||+.+....++.+..+..+++.++++.++|.+..++++.+||||||||++||+||+.+|++|||||||+
T Consensus       114 ~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts  193 (400)
T PRK10070        114 SFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFS  193 (400)
T ss_pred             CCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence            99999999999999987766666655556778999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHh-CCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         460 GMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       460 GLD~~~~~~i~~lL~~l~~-~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      |||+.+++.+++.|+++.+ .|+|||++|||++++..+|||+++|++|+++..|+++++..
T Consensus       194 ~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~  254 (400)
T PRK10070        194 ALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILN  254 (400)
T ss_pred             cCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHh
Confidence            9999999999999999875 48999999999999999999999999999999999998854

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.97  E-value=4.5e-32  Score=307.03  Aligned_cols=204  Identities=20%  Similarity=0.313  Sum_probs=160.7

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++||++.|.  +...++++|+||++.+      .||||+  |||||      .++|+|+++|++|+|+++|.++.. +
T Consensus       342 i~~~~vsf~y~--~~~~~il~~i~l~i~~G~~~aIvG~sGs--GKSTL------l~ll~gl~~p~~G~I~i~g~~i~~~~  411 (582)
T PRK11176        342 IEFRNVTFTYP--GKEVPALRNINFKIPAGKTVALVGRSGS--GKSTI------ANLLTRFYDIDEGEILLDGHDLRDYT  411 (582)
T ss_pred             EEEEEEEEecC--CCCCccccCceEEeCCCCEEEEECCCCC--CHHHH------HHHHHhccCCCCceEEECCEEhhhcC
Confidence            45999999974  2345699999999988      999999  56665      579999999999999999999865 4


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCccccCChHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPH-----------KRTSLANTLSGGM  191 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgG~  191 (601)
                      ....++.++||||++.+|+ -|++||+.++... ..+.    +++.++++..|+.+           .......+|||||
T Consensus       412 ~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~-~~~~----~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGq  485 (582)
T PRK11176        412 LASLRNQVALVSQNVHLFN-DTIANNIAYARTE-QYSR----EQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQ  485 (582)
T ss_pred             HHHHHhhceEEccCceeec-chHHHHHhcCCCC-CCCH----HHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHH
Confidence            4567889999999999985 6999999875311 1222    34455555555332           2233346799999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||+++|||++.+                                                                   
T Consensus       486 rQRi~LARall~~-------------------------------------------------------------------  498 (582)
T PRK11176        486 RQRIAIARALLRD-------------------------------------------------------------------  498 (582)
T ss_pred             HHHHHHHHHHHhC-------------------------------------------------------------------
Confidence            9999866544333                                                                   


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                            |+++|||||||+||+.+...+.+.|.++      .+++|+|++||+++.. +.||+|++|++|+++..|+..
T Consensus       499 ------~~ililDEptsaLD~~t~~~i~~~l~~~------~~~~tvI~VtHr~~~~-~~~D~Ii~l~~g~i~e~g~~~  563 (582)
T PRK11176        499 ------SPILILDEATSALDTESERAIQAALDEL------QKNRTSLVIAHRLSTI-EKADEILVVEDGEIVERGTHA  563 (582)
T ss_pred             ------CCEEEEECccccCCHHHHHHHHHHHHHH------hCCCEEEEEecchHHH-HhCCEEEEEECCEEEEeCCHH
Confidence                  4899999999999999999999999886      2479999999999765 469999999999999887643

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=6.7e-32  Score=265.10  Aligned_cols=202  Identities=20%  Similarity=0.287  Sum_probs=169.2

Q ss_pred             CCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccccc-------ccccccccccccCC------cccccccccCCC
Q psy7365         313 SGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN-------SFARGYYLSLDMKS------APQKSYIGYCPQ  379 (601)
Q Consensus       313 ~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~-------~~g~g~~igld~~~------~~~~~~ig~v~Q  379 (601)
                      .|++.+   +++++-..-++.|++++...   .|++++++.       +.+.....+.++..      ...|++|||++|
T Consensus        15 ~~~~aL---~~Vnl~I~~GE~VaiIG~SG---aGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ   88 (258)
T COG3638          15 GGHQAL---KDVNLEINQGEMVAIIGPSG---AGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQ   88 (258)
T ss_pred             CCceee---eeEeEEeCCCcEEEEECCCC---CcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEec
Confidence            456666   89999999999999998522   455555432       23333333333322      123678999999


Q ss_pred             CcccCCCCCHHHHHHHh--------HHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCE
Q psy7365         380 FDALNDRLTPREHLEFY--------SRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPL  451 (601)
Q Consensus       380 ~~~l~~~lTv~E~L~~~--------~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~l  451 (601)
                      ++++.+.+||.+|+..+        ..+.++..++.+..+-+.|+++|+.+++.++..+|||||||||+|||||+++|++
T Consensus        89 ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pki  168 (258)
T COG3638          89 QFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKI  168 (258)
T ss_pred             cCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCE
Confidence            99999999999999753        3456777777788899999999999999999999999999999999999999999


Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         452 IFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       452 LlLDEPTsGLD~~~~~~i~~lL~~l~~-~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      ++-|||+++|||.+.+.+++.|+++++ +|.|||++.|+++.+.++||||+-|++|+|+++|+++++.+.
T Consensus       169 ILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~~  238 (258)
T COG3638         169 ILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTDE  238 (258)
T ss_pred             EecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhHH
Confidence            999999999999999999999999975 499999999999999999999999999999999999887543

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.97  E-value=9.2e-32  Score=263.56  Aligned_cols=184  Identities=20%  Similarity=0.248  Sum_probs=149.0

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchH
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMT  124 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~  124 (601)
                      .++++++.|+.    . .+.++||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.... 
T Consensus         3 ~~~~l~~~~~~----~-~l~~vs~~i~~Ge~~~l~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~g~~i~~~~-   68 (195)
T PRK13541          3 SLHQLQFNIEQ----K-NLFDLSITFLPSAITYIKGANGC--GKSSL------LRMIAGIMQPSSGNIYYKNCNINNIA-   68 (195)
T ss_pred             EEEEeeEEECC----c-EEEEEEEEEcCCcEEEEECCCCC--CHHHH------HHHHhcCCCCCCcEEEECCcccChhh-
Confidence            47899999853    2 34459999988      999999  56665      67999999999999999999874321 


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcch
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNN  204 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~  204 (601)
                        ++.++|++|++.+++.+||.||+.++...++     ..+++.++++.+|+.+..++.+.+||||||||+++||++   
T Consensus        69 --~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al---  138 (195)
T PRK13541         69 --KPYCTYIGHNLGLKLEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLI---  138 (195)
T ss_pred             --hhhEEeccCCcCCCccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHH---
Confidence              3469999999988889999999988654432     134677889999999889999999999999999754432   


Q ss_pred             hhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEe
Q psy7365         205 KAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILD  284 (601)
Q Consensus       205 ~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLD  284 (601)
                                                         +.+                                   |+++|||
T Consensus       139 -----------------------------------~~~-----------------------------------p~~lllD  148 (195)
T PRK13541        139 -----------------------------------ACQ-----------------------------------SDLWLLD  148 (195)
T ss_pred             -----------------------------------hcC-----------------------------------CCEEEEe
Confidence                                               232                                   5899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEE
Q psy7365         285 EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRI  334 (601)
Q Consensus       285 EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv  334 (601)
                      |||+|||+.++..+++.|++.     ...|.|+|++||+++++.. +|.+
T Consensus       149 EP~~~LD~~~~~~l~~~l~~~-----~~~~~tiii~sh~~~~i~~-~~~~  192 (195)
T PRK13541        149 EVETNLSKENRDLLNNLIVMK-----ANSGGIVLLSSHLESSIKS-AQIL  192 (195)
T ss_pred             CCcccCCHHHHHHHHHHHHHH-----HhCCCEEEEEeCCccccch-hhee
Confidence            999999999999999999764     2358999999999987764 5544

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.97  E-value=2e-31  Score=264.23  Aligned_cols=194  Identities=26%  Similarity=0.376  Sum_probs=157.1

Q ss_pred             CCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-cccccccccCCCCcccC
Q psy7365         313 SGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-APQKSYIGYCPQFDALN  384 (601)
Q Consensus       313 ~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-~~~~~~ig~v~Q~~~l~  384 (601)
                      .+++++   +++++...-++.+++++...   .|++++++       +..|+.++.+.+... ...++.++|+||++.++
T Consensus        11 ~~~~il---~~vs~~i~~Ge~~~i~G~nG---sGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~   84 (213)
T cd03259          11 GSVRAL---DDLSLTVEPGEFLALLGPSG---CGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALF   84 (213)
T ss_pred             CCeeee---cceeEEEcCCcEEEEECCCC---CCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhc
Confidence            344554   88999999999999998522   45554432       233333333333321 12346799999999999


Q ss_pred             CCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHH
Q psy7365         385 DRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG  464 (601)
Q Consensus       385 ~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~  464 (601)
                      +.+|++||+.+....++.......+++.++++.+++.+..++++.+||||||||++||+||+.+|+++||||||+|||+.
T Consensus        85 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~  164 (213)
T cd03259          85 PHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAK  164 (213)
T ss_pred             cCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence            99999999988655444444445567889999999998889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEec
Q psy7365         465 ARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  512 (601)
Q Consensus       465 ~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G  512 (601)
                      +++.++++|++++++ |+|||++|||++++..+|||+++|++|+++..|
T Consensus       165 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         165 LREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG  213 (213)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            999999999998764 899999999999999999999999999998765

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.97  E-value=2.2e-31  Score=285.57  Aligned_cols=202  Identities=21%  Similarity=0.290  Sum_probs=168.5

Q ss_pred             CCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------ccccccccccc----ccCCc---c----ccccc
Q psy7365         313 SGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSL----DMKSA---P----QKSYI  374 (601)
Q Consensus       313 ~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igl----d~~~~---~----~~~~i  374 (601)
                      .|.+.++  |++++-..-++.+++++...   .|++++++       ++.|+.++.+.    +....   .    .++++
T Consensus        34 ~g~~~~l--~~vsf~i~~Gei~~I~G~nG---sGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i  108 (382)
T TIGR03415        34 TGLVVGV--ANASLDIEEGEICVLMGLSG---SGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRV  108 (382)
T ss_pred             hCCEEEE--EeeEEEEcCCCEEEEECCCC---CcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCE
Confidence            3555554  99999999999999997422   45555432       33344444332    22111   1    12579


Q ss_pred             ccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEE
Q psy7365         375 GYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFL  454 (601)
Q Consensus       375 g~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlL  454 (601)
                      +|+||++.+++.+|+.||+.|.....+.++.+.++++.++++.++|.+..++++.+||||||||++||+||+.+|++|||
T Consensus       109 ~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLl  188 (382)
T TIGR03415       109 SMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLM  188 (382)
T ss_pred             EEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999999999999999999887666766666667889999999999999999999999999999999999999999999


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         455 DEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       455 DEPTsGLD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ||||+||||.+++++++.|.++.++ |+|||++|||++++.++||||++|++|+++..|+++++..
T Consensus       189 DEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~  254 (382)
T TIGR03415       189 DEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL  254 (382)
T ss_pred             ECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence            9999999999999999999999765 9999999999999999999999999999999999998854

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.4e-31  Score=299.99  Aligned_cols=192  Identities=24%  Similarity=0.293  Sum_probs=158.5

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT  121 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~  121 (601)
                      .+..+++|++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.    
T Consensus       318 ~~l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~NGs--GKSTL------l~~i~G~~~p~~G~i~~~~~----  381 (530)
T PRK15064        318 NALEVENLTKGFDN----GPLFKNLNLLLEAGERLAIIGENGV--GKTTL------LRTLVGELEPDSGTVKWSEN----  381 (530)
T ss_pred             ceEEEEeeEEeeCC----ceeecCcEEEECCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCeEEEECCc----
Confidence            45679999999864    3589999999988      999999  56665      67999999999999999873    


Q ss_pred             chHHhcccEEEEccCCC--CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC-cccCCccccCChHHHhhhhch
Q psy7365         122 DMTTIRRSLGVCPQYNA--LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP-HKRTSLANTLSGGMQRKLDNV  198 (601)
Q Consensus       122 ~~~~~~~~ig~v~Q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qr~~~~  198 (601)
                            +.+||+||++.  +++.+|+.||+.+...    . ...+.++.++++.+|+. +..++++.+||||||||+++|
T Consensus       382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~----~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la  450 (530)
T PRK15064        382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWRQ----E-GDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFG  450 (530)
T ss_pred             ------eEEEEEcccccccCCCCCcHHHHHHHhcc----C-CccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHH
Confidence                  46999999974  5567999999875321    1 11235678899999995 678999999999999999754


Q ss_pred             hhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCC
Q psy7365         199 KVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPA  278 (601)
Q Consensus       199 ~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  278 (601)
                      |++                                      +.                                   +|
T Consensus       451 ~al--------------------------------------~~-----------------------------------~p  457 (530)
T PRK15064        451 KLM--------------------------------------MQ-----------------------------------KP  457 (530)
T ss_pred             HHH--------------------------------------hc-----------------------------------CC
Confidence            432                                      22                                   25


Q ss_pred             cEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccc-cccC
Q psy7365         279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQ-CCGS  347 (601)
Q Consensus       279 ~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv-~~G~  347 (601)
                      ++|||||||+|||+.+++.+++.|+++        +.|||++|||++++..+||++++|.+|+++ ..++
T Consensus       458 ~lllLDEPt~~LD~~~~~~l~~~l~~~--------~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~  519 (530)
T PRK15064        458 NVLVMDEPTNHMDMESIESLNMALEKY--------EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGT  519 (530)
T ss_pred             CEEEEcCCCCCCCHHHHHHHHHHHHHC--------CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCC
Confidence            899999999999999999999999864        349999999999999999999999999986 4443

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.97  E-value=3.2e-31  Score=286.21  Aligned_cols=200  Identities=20%  Similarity=0.359  Sum_probs=164.7

Q ss_pred             cCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC---cccccccccCCCCc
Q psy7365         312 LSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS---APQKSYIGYCPQFD  381 (601)
Q Consensus       312 ~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~---~~~~~~ig~v~Q~~  381 (601)
                      +.+++++   +++++...-++.+++++...   .|++++++       +..|..++.+.+...   ...++++||++|++
T Consensus        13 y~~~~vL---~~vs~~i~~Geiv~liGpNG---aGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~   86 (402)
T PRK09536         13 FGDTTVL---DGVDLSVREGSLVGLVGPNG---AGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDT   86 (402)
T ss_pred             ECCEEEE---EeeEEEECCCCEEEEECCCC---chHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCC
Confidence            3455655   89999999999999997522   45555443       334444444544332   22357799999999


Q ss_pred             ccCCCCCHHHHHHHhHHhc----CCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECC
Q psy7365         382 ALNDRLTPREHLEFYSRVR----NLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEP  457 (601)
Q Consensus       382 ~l~~~lTv~E~L~~~~~~~----g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEP  457 (601)
                      .+++.+|++||+.+....+    +......+++++++++.+++.+..++++.+||||||||++||+||+++|++||||||
T Consensus        87 ~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEP  166 (402)
T PRK09536         87 SLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEP  166 (402)
T ss_pred             CCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence            9999999999998753211    111234456789999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHH
Q psy7365         458 TSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  517 (601)
Q Consensus       458 TsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L  517 (601)
                      |+|||+.++.+++++|++++++|+|||++|||++++.++|||+++|++|+++..|+++++
T Consensus       167 tsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev  226 (402)
T PRK09536        167 TASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADV  226 (402)
T ss_pred             cccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            999999999999999999987799999999999999999999999999999999999974

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.97  E-value=4.7e-32  Score=313.60  Aligned_cols=202  Identities=25%  Similarity=0.381  Sum_probs=161.0

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++|+++.|+.   +.++++|+||++.+      .|||||  |||||      .++|+|+++|++|+|++||.++.. +
T Consensus       474 I~~~~vsf~y~~---~~~iL~~isl~i~~G~~vaIvG~SGs--GKSTL------lklL~gl~~p~~G~I~idg~~i~~~~  542 (708)
T TIGR01193       474 IVINDVSYSYGY---GSNILSDISLTIKMNSKTTIVGMSGS--GKSTL------AKLLVGFFQARSGEILLNGFSLKDID  542 (708)
T ss_pred             EEEEEEEEEcCC---CCcceeceeEEECCCCEEEEECCCCC--CHHHH------HHHHhccCCCCCcEEEECCEEHHHcC
Confidence            458999999852   35699999999988      999999  56655      579999999999999999999864 4


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCC-----------CcccCCccccCChHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGI-----------PHKRTSLANTLSGGM  191 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgG~  191 (601)
                      ....|+.+|||||+|.+|.. |++||+.++.. ...+.+    ++.++++..|+           +.........|||||
T Consensus       543 ~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~-~~~~~~----~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQ  616 (708)
T TIGR01193       543 RHTLRQFINYLPQEPYIFSG-SILENLLLGAK-ENVSQD----EIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQ  616 (708)
T ss_pred             HHHHHHheEEEecCceehhH-HHHHHHhccCC-CCCCHH----HHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHH
Confidence            56788899999999999865 99999988632 123333    23444444443           333345567899999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||+++||||+.+                                                                   
T Consensus       617 rQRialARall~~-------------------------------------------------------------------  629 (708)
T TIGR01193       617 KQRIALARALLTD-------------------------------------------------------------------  629 (708)
T ss_pred             HHHHHHHHHHhhC-------------------------------------------------------------------
Confidence            9999876554433                                                                   


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                            |++||||||||+||+.+...+.+.|.++       .|+|+|++||+++.+ ..||+|++|++|+++..|+..
T Consensus       630 ------p~iliLDE~Ts~LD~~te~~i~~~L~~~-------~~~T~IiitHr~~~~-~~~D~i~~l~~G~i~~~G~~~  693 (708)
T TIGR01193       630 ------SKVLILDESTSNLDTITEKKIVNNLLNL-------QDKTIIFVAHRLSVA-KQSDKIIVLDHGKIIEQGSHD  693 (708)
T ss_pred             ------CCEEEEeCccccCCHHHHHHHHHHHHHh-------cCCEEEEEecchHHH-HcCCEEEEEECCEEEEECCHH
Confidence                  4899999999999999999999999864       478999999999876 579999999999999887643

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.97  E-value=3.8e-31  Score=266.17  Aligned_cols=195  Identities=23%  Similarity=0.320  Sum_probs=159.4

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcc----cccccccCCCCcccCCCCCHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAP----QKSYIGYCPQFDALNDRLTPR  390 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~----~~~~ig~v~Q~~~l~~~lTv~  390 (601)
                      +++++...-++.+++++...   +|++++++       +..|+.++.+.+.....    .++.++|+||++.+++.+|++
T Consensus        17 ~~vsl~i~~Ge~~~l~G~nG---sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~   93 (236)
T cd03219          17 DDVSFSVRPGEIHGLIGPNG---AGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVL   93 (236)
T ss_pred             cCceEEecCCcEEEEECCCC---CCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHH
Confidence            88898888999999997522   45555433       23344333343332211    135699999999999999999


Q ss_pred             HHHHHhHHhcCC----------ChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCC
Q psy7365         391 EHLEFYSRVRNL----------PSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG  460 (601)
Q Consensus       391 E~L~~~~~~~g~----------~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsG  460 (601)
                      ||+.+.....+.          ......+.+.++++.+++.+..++++.+||||||||++||+||+.+|+++||||||+|
T Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~  173 (236)
T cd03219          94 ENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAG  173 (236)
T ss_pred             HHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence            999886543322          1233455788999999999889999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         461 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       461 LD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ||+.+++.++++|++++++|+|||++|||++++..+|||+++|++|+++..|+++++..
T Consensus       174 LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  232 (236)
T cd03219         174 LNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN  232 (236)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence            99999999999999998789999999999999999999999999999999999988743

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=3e-31  Score=275.37  Aligned_cols=195  Identities=22%  Similarity=0.326  Sum_probs=162.0

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc-----ccccccccCCCCcc-cCCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA-----PQKSYIGYCPQFDA-LNDRLT  388 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~-----~~~~~ig~v~Q~~~-l~~~lT  388 (601)
                      .++++...-++.+++++...   .|++++++       +..|..++.+.+....     ..++++||+||++. .+...|
T Consensus        24 ~~vs~~i~~Ge~~~i~G~nG---aGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t  100 (287)
T PRK13637         24 DNVNIEIEDGEFVGLIGHTG---SGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEET  100 (287)
T ss_pred             eeeEEEEcCCCEEEEECCCC---CcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccccc
Confidence            78888888999999997522   45555432       3334444445444321     23568999999974 334579


Q ss_pred             HHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCC--cccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHH
Q psy7365         389 PREHLEFYSRVRNLPSVLLNTIVNESLNKFALG--HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR  466 (601)
Q Consensus       389 v~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~--~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~  466 (601)
                      |+||+.|.....+.+..+..+++.++++.++|.  +..++++.+||||||||++||+||+.+|++|||||||+|||+.++
T Consensus       101 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~  180 (287)
T PRK13637        101 IEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGR  180 (287)
T ss_pred             HHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHH
Confidence            999999876656666666667889999999997  678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         467 RFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       467 ~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ..++++|++++++ |+|||++|||++++..+||||++|++|++++.|+++++.+
T Consensus       181 ~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  234 (287)
T PRK13637        181 DEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK  234 (287)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            9999999999765 9999999999999999999999999999999999999754

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.97  E-value=4.5e-31  Score=265.28  Aligned_cols=194  Identities=22%  Similarity=0.305  Sum_probs=161.4

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc------ccccccccCCCCcccCCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA------PQKSYIGYCPQFDALNDRLT  388 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~------~~~~~ig~v~Q~~~l~~~lT  388 (601)
                      +++++...-++.+++++...   .|++++++       +..|..++.+.+....      ..++.++|+||++.+++.+|
T Consensus        22 ~~~s~~i~~Ge~~~l~G~nG---sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   98 (233)
T cd03258          22 KDVSLSVPKGEIFGIIGRSG---AGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRT   98 (233)
T ss_pred             ecceEEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCc
Confidence            88999999999999997522   45554432       2334443444333221      12567999999999999999


Q ss_pred             HHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHH
Q psy7365         389 PREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRF  468 (601)
Q Consensus       389 v~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~  468 (601)
                      +.||+.+....++.......+.+.++++.+++.+..++++.+||||||||++||+||+.+|+++||||||+|||+.++..
T Consensus        99 ~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~  178 (233)
T cd03258          99 VFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQS  178 (233)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHH
Confidence            99999886555555444455678899999999988999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHH
Q psy7365         469 LWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  518 (601)
Q Consensus       469 i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~  518 (601)
                      ++++|++++++ |+|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus       179 l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  229 (233)
T cd03258         179 ILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF  229 (233)
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence            99999999765 899999999999999999999999999999999988774

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.97  E-value=3.1e-31  Score=299.67  Aligned_cols=194  Identities=20%  Similarity=0.240  Sum_probs=159.8

Q ss_pred             cchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccC
Q psy7365          46 GAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI  119 (601)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~  119 (601)
                      +..+..++++++.|++.     .++++||++.+      +||||+  |||||      .++|+|+++|++|+|.++    
T Consensus       337 ~~~~l~~~~ls~~~~~~-----~l~~~s~~i~~Geiv~l~G~NGs--GKSTL------lk~L~Gl~~p~~G~I~~~----  399 (590)
T PRK13409        337 RETLVEYPDLTKKLGDF-----SLEVEGGEIYEGEVIGIVGPNGI--GKTTF------AKLLAGVLKPDEGEVDPE----  399 (590)
T ss_pred             CceEEEEcceEEEECCE-----EEEecceEECCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCceEEEEe----
Confidence            34566799999988542     48999999987      999999  56665      579999999999999885    


Q ss_pred             CCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365         120 RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK  199 (601)
Q Consensus       120 ~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~  199 (601)
                              ..+||+||++.+++++||.||+.++...++  .   ...+.++++.+||.+..++++.+|||||||||++|+
T Consensus       400 --------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~--~---~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAr  466 (590)
T PRK13409        400 --------LKISYKPQYIKPDYDGTVEDLLRSITDDLG--S---SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAA  466 (590)
T ss_pred             --------eeEEEecccccCCCCCcHHHHHHHHhhhcC--h---HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHH
Confidence                    159999999988899999999987643222  1   234678999999999899999999999999998544


Q ss_pred             hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365         200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS  279 (601)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  279 (601)
                      ++                                      +.                                   +|+
T Consensus       467 aL--------------------------------------~~-----------------------------------~p~  473 (590)
T PRK13409        467 CL--------------------------------------SR-----------------------------------DAD  473 (590)
T ss_pred             HH--------------------------------------hc-----------------------------------CCC
Confidence            32                                      22                                   258


Q ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                      +|||||||+|||+.++..++++|+++.    +..|+|+|++|||++++..+|||+++|.+ ++...|.
T Consensus       474 llLLDEPt~~LD~~~~~~l~~~l~~l~----~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~  536 (590)
T PRK13409        474 LYLLDEPSAHLDVEQRLAVAKAIRRIA----EEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH  536 (590)
T ss_pred             EEEEeCCccCCCHHHHHHHHHHHHHHH----HhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence            999999999999999999999999873    23589999999999999999999999964 6655443

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.97  E-value=3.7e-31  Score=267.17  Aligned_cols=201  Identities=21%  Similarity=0.324  Sum_probs=162.4

Q ss_pred             CCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc-ccccccccCCCCcccC
Q psy7365         313 SGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA-PQKSYIGYCPQFDALN  384 (601)
Q Consensus       313 ~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~-~~~~~ig~v~Q~~~l~  384 (601)
                      .++.++   +++++-..-++.+++++...   .|++++++       +..|+.++.+.+.... ..++.++|+||++.++
T Consensus        13 ~~~~il---~~vs~~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~   86 (239)
T cd03296          13 GDFVAL---DDVSLDIPSGELVALLGPSG---SGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALF   86 (239)
T ss_pred             CCEEee---eeeeEEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCccc
Confidence            344544   89999999999999997522   45554433       2334443434333221 1246799999999999


Q ss_pred             CCCCHHHHHHHhHHhcCC----ChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCC
Q psy7365         385 DRLTPREHLEFYSRVRNL----PSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG  460 (601)
Q Consensus       385 ~~lTv~E~L~~~~~~~g~----~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsG  460 (601)
                      +.+|+.||+.+....++.    ...+..+++.++++.++|.+..++++.+||||||||++||+||+.+|++|||||||+|
T Consensus        87 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~  166 (239)
T cd03296          87 RHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGA  166 (239)
T ss_pred             CCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence            899999999876544332    2233445688999999999888999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         461 MDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       461 LD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ||+.+++.++++|++++++ |+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus       167 LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  226 (239)
T cd03296         167 LDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD  226 (239)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence            9999999999999999765 8999999999999999999999999999999999988753

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.97  E-value=9.5e-32  Score=310.99  Aligned_cols=203  Identities=21%  Similarity=0.301  Sum_probs=159.6

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++||++.|.+. .+.++++|+||++++      .|||||  |||||      .++|.|+++|++|+|.+||.++.. +
T Consensus       479 I~~~nVsf~Y~~~-~~~~vL~~isl~i~~Ge~vaIvG~SGs--GKSTL------l~lL~gl~~p~~G~I~idg~~i~~~~  549 (711)
T TIGR00958       479 IEFQDVSFSYPNR-PDVPVLKGLTFTLHPGEVVALVGPSGS--GKSTV------AALLQNLYQPTGGQVLLDGVPLVQYD  549 (711)
T ss_pred             EEEEEEEEECCCC-CCCccccCceEEEcCCCEEEEECCCCC--CHHHH------HHHHHhccCCCCCEEEECCEEHHhcC
Confidence            5599999997532 135799999999998      999999  56655      579999999999999999999865 4


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCccccCChHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPH-----------KRTSLANTLSGGM  191 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgG~  191 (601)
                      ...+++.++||||+|.+|. -|++||+.++..  ..+.    +++.++++..|+.+           ..+....+|||||
T Consensus       550 ~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~~--~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQ  622 (711)
T TIGR00958       550 HHYLHRQVALVGQEPVLFS-GSVRENIAYGLT--DTPD----EEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQ  622 (711)
T ss_pred             HHHHHhhceEEecCccccc-cCHHHHHhcCCC--CCCH----HHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHH
Confidence            5667889999999999885 699999987642  1222    33445566555443           2334456799999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||+++|||++.+                                                                   
T Consensus       623 kQRlalARALl~~-------------------------------------------------------------------  635 (711)
T TIGR00958       623 KQRIAIARALVRK-------------------------------------------------------------------  635 (711)
T ss_pred             HHHHHHHHHHhcC-------------------------------------------------------------------
Confidence            9999876654433                                                                   


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                            |+++|||||||+||+.+...+.+ ...       ..++|+|++||+++... .||+|++|++|+++..|+...
T Consensus       636 ------p~ILILDEpTSaLD~~te~~i~~-~~~-------~~~~TvIiItHrl~~i~-~aD~IivL~~G~ive~Gt~~e  699 (711)
T TIGR00958       636 ------PRVLILDEATSALDAECEQLLQE-SRS-------RASRTVLLIAHRLSTVE-RADQILVLKKGSVVEMGTHKQ  699 (711)
T ss_pred             ------CCEEEEEccccccCHHHHHHHHH-hhc-------cCCCeEEEEeccHHHHH-hCCEEEEEECCEEEEeeCHHH
Confidence                  48999999999999999988887 221       25899999999998765 699999999999998886543

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.97  E-value=2.4e-31  Score=303.04  Aligned_cols=199  Identities=27%  Similarity=0.360  Sum_probs=169.7

Q ss_pred             CccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCC---eeEEEEccccCCCchHHhcccEEEEc
Q psy7365          64 IDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVS---SGTAKIYDHDIRTDMTTIRRSLGVCP  134 (601)
Q Consensus        64 ~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~---~G~v~~~g~~~~~~~~~~~~~ig~v~  134 (601)
                      +.+++|+|+|+++.+      +|||||  |||||      .++|+|..+|.   +|+|.++|.++.  ....++.+||||
T Consensus        36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGs--GKSTL------L~~L~g~~~~~~~~~G~i~~~g~~~~--~~~~~~~i~yv~  105 (617)
T TIGR00955        36 PRKHLLKNVSGVAKPGELLAVMGSSGA--GKTTL------MNALAFRSPKGVKGSGSVLLNGMPID--AKEMRAISAYVQ  105 (617)
T ss_pred             CccccccCCEEEEeCCeEEEEECCCCC--CHHHH------HHHHhCCCCCCCcceeEEEECCEECC--HHHHhhhceeec
Confidence            357799999999998      999999  57665      67999999885   899999999874  234677899999


Q ss_pred             cCCCCCCCCCHHHHHHHhHhhc---CCChHHHHHHHHHHHHHcCCCcccCCccc------cCChHHHhhhhchhhhcchh
Q psy7365         135 QYNALFDKLTVEEHMWFYSQLK---QVPKDLAQLEISNMIGDLGIPHKRTSLAN------TLSGGMQRKLDNVKVWFNNK  205 (601)
Q Consensus       135 Q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~------~LSgG~~qr~~~~~~~~~~~  205 (601)
                      |++.+++.+||+||+.|.+.+.   ++++++.+++++++++.+||.+..+..++      .||||||||+++|++|    
T Consensus       106 Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL----  181 (617)
T TIGR00955       106 QDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASEL----  181 (617)
T ss_pred             cccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHH----
Confidence            9999999999999999988754   23456667789999999999998888887      4999999999865433    


Q ss_pred             hHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEec
Q psy7365         206 AWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDE  285 (601)
Q Consensus       206 ~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDE  285 (601)
                                                        +.+                                   |++++|||
T Consensus       182 ----------------------------------~~~-----------------------------------p~vlllDE  192 (617)
T TIGR00955       182 ----------------------------------LTD-----------------------------------PPLLFCDE  192 (617)
T ss_pred             ----------------------------------HcC-----------------------------------CCEEEeeC
Confidence                                              233                                   58999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchh-HHHhcCCEEEEecCCccccccCccc
Q psy7365         286 PTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMD-EADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       286 PtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~-~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                      ||+|||+.++..+.+.|+++.     .+|+|+|+++|+.+ ++.+++|++++|.+|+++..|+...
T Consensus       193 PtsgLD~~~~~~l~~~L~~l~-----~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~  253 (617)
T TIGR00955       193 PTSGLDSFMAYSVVQVLKGLA-----QKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQ  253 (617)
T ss_pred             CCcchhHHHHHHHHHHHHHHH-----hCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHH
Confidence            999999999999999999983     35899999999995 7889999999999999998887543

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.97  E-value=3.8e-31  Score=323.37  Aligned_cols=212  Identities=21%  Similarity=0.260  Sum_probs=178.3

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCC---CCeeEEEEcccc
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLP---VSSGTAKIYDHD  118 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~---~~~G~v~~~g~~  118 (601)
                      ....++||++.+++.+....+|+|+|+++.+      +|||||  |||||      .++|+|+.+   |++|+|.++|++
T Consensus       758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGa--GKSTL------L~~Lag~~~~g~~~~G~I~i~G~~  829 (1394)
T TIGR00956       758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGA--GKTTL------LNVLAERVTTGVITGGDRLVNGRP  829 (1394)
T ss_pred             ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCC--CHHHH------HHHHhCCCCCCCcceeEEEECCEE
Confidence            3445899999987655567899999999998      999999  57665      679999998   789999999998


Q ss_pred             CCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhc---CCChHHHHHHHHHHHHHcCCCcccCCccc----cCChHH
Q psy7365         119 IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK---QVPKDLAQLEISNMIGDLGIPHKRTSLAN----TLSGGM  191 (601)
Q Consensus       119 ~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~----~LSgG~  191 (601)
                      +..   ..++.+|||+|++.+++.+||+||+.|.+..+   +.++++..++++++++.+||.+..++.++    +|||||
T Consensus       830 ~~~---~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGq  906 (1394)
T TIGR00956       830 LDS---SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQ  906 (1394)
T ss_pred             CCh---hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHH
Confidence            742   35778999999998899999999999987654   24455666789999999999999999887    799999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||++||++                                      ++.+                             
T Consensus       907 rqRl~Ia~a--------------------------------------L~~~-----------------------------  919 (1394)
T TIGR00956       907 RKRLTIGVE--------------------------------------LVAK-----------------------------  919 (1394)
T ss_pred             hhHHHHHHH--------------------------------------HHcC-----------------------------
Confidence            999985433                                      2232                             


Q ss_pred             hhccCCCc-EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHH-HhcCCEEEEecCC-ccccccCc
Q psy7365         272 AMSFVPAS-TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA-DLLGDRIAIIAAG-KLQCCGSS  348 (601)
Q Consensus       272 ~~~~~~~~-~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~-~~l~Drv~vL~~G-kIv~~G~~  348 (601)
                            |+ +|+|||||+|||+.++..++++|+++.     .+|+|||+++|+++.. ...+|++++|.+| +++..|+.
T Consensus       920 ------P~~iLlLDEPTsgLD~~~~~~i~~~L~~la-----~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~  988 (1394)
T TIGR00956       920 ------PKLLLFLDEPTSGLDSQTAWSICKLMRKLA-----DHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDL  988 (1394)
T ss_pred             ------CCeEEEEcCCCCCCCHHHHHHHHHHHHHHH-----HcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCc
Confidence                  56 999999999999999999999999983     3589999999999974 5789999999987 98877754

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.4e-31  Score=278.35  Aligned_cols=195  Identities=20%  Similarity=0.263  Sum_probs=160.6

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccC---------------------------C
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMK---------------------------S  367 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~---------------------------~  367 (601)
                      +++++...-++.+++++...   +|+++++       ++..|..++.+.+..                           .
T Consensus        24 ~~vsl~i~~Ge~v~iiG~nG---sGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (305)
T PRK13651         24 DNVSVEINQGEFIAIIGQTG---SGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKI  100 (305)
T ss_pred             eeeEEEEeCCCEEEEECCCC---CcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchH
Confidence            88898888999999997522   4544433       223343333222210                           0


Q ss_pred             cccccccccCCCCc-ccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCC-cccccccCcCChHHHHHHHHHHHH
Q psy7365         368 APQKSYIGYCPQFD-ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIAL  445 (601)
Q Consensus       368 ~~~~~~ig~v~Q~~-~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~-~~~~~~~~~LSgGqkQRl~lA~AL  445 (601)
                      ...++.+||+||++ ..+...||+||+.|....++.+..+..+++.++++.+||. +..++++.+||||||||++||+||
T Consensus       101 ~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL  180 (305)
T PRK13651        101 KEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGIL  180 (305)
T ss_pred             HHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence            12356799999986 3344579999999876666777666777899999999996 789999999999999999999999


Q ss_pred             hCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         446 LGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       446 ~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      +.+|++|||||||+|||+.++..++++|++++++|+|||++|||++++..+||||++|++|++++.|+++++..
T Consensus       181 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~  254 (305)
T PRK13651        181 AMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILS  254 (305)
T ss_pred             HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence            99999999999999999999999999999998779999999999999999999999999999999999999864

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.97  E-value=5.2e-31  Score=271.13  Aligned_cols=202  Identities=20%  Similarity=0.282  Sum_probs=164.8

Q ss_pred             cCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc---c----cccccccC
Q psy7365         312 LSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA---P----QKSYIGYC  377 (601)
Q Consensus       312 ~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~---~----~~~~ig~v  377 (601)
                      +.+.+++   +++++...-++.+++++...   .|++++++       +..|..++.+.+....   .    .++.+||+
T Consensus        34 ~~~~~il---~~is~~i~~Ge~~~l~G~nG---sGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v  107 (269)
T cd03294          34 TGQTVGV---NDVSLDVREGEIFVIMGLSG---SGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMV  107 (269)
T ss_pred             cCCceEe---eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEE
Confidence            3455555   89999999999999998522   45554432       2233333333332211   1    13579999


Q ss_pred             CCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECC
Q psy7365         378 PQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEP  457 (601)
Q Consensus       378 ~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEP  457 (601)
                      ||++.+++.+|+.||+.+.....+.......+++.++++.++|.+..++++.+||||||||++||+||+.+|++||||||
T Consensus       108 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEP  187 (269)
T cd03294         108 FQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEA  187 (269)
T ss_pred             ecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            99999999999999998866555544444556788999999999889999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         458 TSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       458 TsGLD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      |+|||+.+++.++++|+++.++ |+|||++||+++++..+||++++|++|+++..|+++++.+
T Consensus       188 t~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  250 (269)
T cd03294         188 FSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT  250 (269)
T ss_pred             CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence            9999999999999999998754 8999999999999999999999999999999999998864

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.97  E-value=4e-31  Score=299.78  Aligned_cols=201  Identities=26%  Similarity=0.412  Sum_probs=159.3

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++++++.|+.   ..++++|+||++.+      .|||||  |||||      .++|+|+++|++|+|+++|.++.. +
T Consensus       335 I~~~~vsf~y~~---~~~iL~~inl~i~~G~~v~IvG~sGs--GKSTL------l~lL~gl~~p~~G~I~i~g~~i~~~~  403 (588)
T PRK13657        335 VEFDDVSFSYDN---SRQGVEDVSFEAKPGQTVAIVGPTGA--GKSTL------INLLQRVFDPQSGRILIDGTDIRTVT  403 (588)
T ss_pred             EEEEEEEEEeCC---CCceecceeEEECCCCEEEEECCCCC--CHHHH------HHHHhcCcCCCCCEEEECCEEhhhCC
Confidence            459999999852   24589999999988      999999  56665      579999999999999999999865 4


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCC-----------CcccCCccccCChHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGI-----------PHKRTSLANTLSGGM  191 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgG~  191 (601)
                      ...+++.++|+||+|.+|. -|++||+.++..  ..+.+    ++.++++.+|+           +.........|||||
T Consensus       404 ~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~--~~~d~----~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq  476 (588)
T PRK13657        404 RASLRRNIAVVFQDAGLFN-RSIEDNIRVGRP--DATDE----EMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGE  476 (588)
T ss_pred             HHHHHhheEEEecCccccc-ccHHHHHhcCCC--CCCHH----HHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHH
Confidence            5667889999999999985 599999987632  22323    23344444443           333334456799999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||+++||+++++                                                                   
T Consensus       477 ~QRialARall~~-------------------------------------------------------------------  489 (588)
T PRK13657        477 RQRLAIARALLKD-------------------------------------------------------------------  489 (588)
T ss_pred             HHHHHHHHHHhcC-------------------------------------------------------------------
Confidence            9999866554333                                                                   


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                            |+++|||||||+||+.+...+++.|.++      ..++|+|++||+.+.+ +.||++++|++|++...|+.
T Consensus       490 ------~~iliLDEpts~LD~~t~~~i~~~l~~~------~~~~tvIiitHr~~~~-~~~D~ii~l~~G~i~~~g~~  553 (588)
T PRK13657        490 ------PPILILDEATSALDVETEAKVKAALDEL------MKGRTTFIIAHRLSTV-RNADRILVFDNGRVVESGSF  553 (588)
T ss_pred             ------CCEEEEeCCccCCCHHHHHHHHHHHHHH------hcCCEEEEEEecHHHH-HhCCEEEEEECCEEEEeCCH
Confidence                  4899999999999999999999999876      2479999999999876 57999999999999877653

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.97  E-value=4.1e-31  Score=299.48  Aligned_cols=206  Identities=23%  Similarity=0.311  Sum_probs=162.3

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      ..++|+++.|+.   ..++++|+||++++      +||||+  |||||      .++|+|+++|++|+|.++|.++.. +
T Consensus       335 i~~~~v~~~y~~---~~~~l~~i~~~i~~G~~~~ivG~sGs--GKSTL------~~ll~g~~~~~~G~i~~~g~~~~~~~  403 (585)
T TIGR01192       335 VEFRHITFEFAN---SSQGVFDVSFEAKAGQTVAIVGPTGA--GKTTL------INLLQRVYDPTVGQILIDGIDINTVT  403 (585)
T ss_pred             EEEEEEEEECCC---CCccccceeEEEcCCCEEEEECCCCC--CHHHH------HHHHccCCCCCCCEEEECCEEhhhCC
Confidence            458999999853   23589999999988      999999  56665      579999999999999999998864 4


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHH-----HHHHHHc--CCCcccCCccccCChHHHhhh
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEI-----SNMIGDL--GIPHKRTSLANTLSGGMQRKL  195 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LSgG~~qr~  195 (601)
                      ....++.+||+||+|.+|. .|++||+.++...  .+.++....+     .+.+..+  |+....+.....||||||||+
T Consensus       404 ~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~~--~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl  480 (585)
T TIGR01192       404 RESLRKSIATVFQDAGLFN-RSIRENIRLGREG--ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRL  480 (585)
T ss_pred             HHHHHhheEEEccCCccCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHH
Confidence            4567889999999999885 6999999886322  2333332221     2223332  455556677889999999999


Q ss_pred             hchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhcc
Q psy7365         196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSF  275 (601)
Q Consensus       196 ~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  275 (601)
                      ++||+|+                                      .+                                 
T Consensus       481 ~lARall--------------------------------------~~---------------------------------  489 (585)
T TIGR01192       481 AIARAIL--------------------------------------KN---------------------------------  489 (585)
T ss_pred             HHHHHHh--------------------------------------cC---------------------------------
Confidence            8655443                                      32                                 


Q ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       276 ~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                        |+++||||||++||+.+.+.+++.|.++      .+++|+|++||+.+.+. .||++++|++|+++..|+..
T Consensus       490 --p~ililDEpts~LD~~~~~~i~~~l~~~------~~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~~~g~~~  554 (585)
T TIGR01192       490 --APILVLDEATSALDVETEARVKNAIDAL------RKNRTTFIIAHRLSTVR-NADLVLFLDQGRLIEKGSFQ  554 (585)
T ss_pred             --CCEEEEECCccCCCHHHHHHHHHHHHHH------hCCCEEEEEEcChHHHH-cCCEEEEEECCEEEEECCHH
Confidence              5899999999999999999999999876      24899999999998885 69999999999998777543

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.97  E-value=5.5e-31  Score=261.86  Aligned_cols=188  Identities=26%  Similarity=0.458  Sum_probs=156.4

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC--cccccccccCCCCcccCCCCCHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS--APQKSYIGYCPQFDALNDRLTPREH  392 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~--~~~~~~ig~v~Q~~~l~~~lTv~E~  392 (601)
                      +++++...-++.+++++...   .|++++++       +..|+.++.+.+...  ...++.+||+||++.+++.+|++||
T Consensus        22 ~~~sl~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~   98 (218)
T cd03266          22 DGVSFTVKPGEVTGLLGPNG---AGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAREN   98 (218)
T ss_pred             cceEEEEcCCcEEEEECCCC---CCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHH
Confidence            88888888999999997522   45555433       233333333333221  1235679999999999999999999


Q ss_pred             HHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHH
Q psy7365         393 LEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTC  472 (601)
Q Consensus       393 L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~l  472 (601)
                      +.+....++.+..+..+++.++++.+++.+..++++.+||||||||++||+||+.+|++|||||||+|||+.+++.++++
T Consensus        99 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~  178 (218)
T cd03266          99 LEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREF  178 (218)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence            99876666655555567789999999999889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEec
Q psy7365         473 IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  512 (601)
Q Consensus       473 L~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G  512 (601)
                      |+++.++|+|||++||+++++..+|||+++|++|+++..|
T Consensus       179 l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~  218 (218)
T cd03266         179 IRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG  218 (218)
T ss_pred             HHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence            9999777999999999999999999999999999998754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=2.1e-31  Score=257.81  Aligned_cols=194  Identities=20%  Similarity=0.266  Sum_probs=162.4

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccccc------------ccccccccccccCC-----cccccccccCCCCcccC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN------------SFARGYYLSLDMKS-----APQKSYIGYCPQFDALN  384 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~------------~~g~g~~igld~~~-----~~~~~~ig~v~Q~~~l~  384 (601)
                      ++++.-..-....++|+...   ||++++++.            ..|+..+.|.++..     ...|++||+|||.|..|
T Consensus        24 ~~i~l~i~~~~VTAlIGPSG---cGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPF  100 (253)
T COG1117          24 KDINLDIPKNKVTALIGPSG---CGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPF  100 (253)
T ss_pred             ccCceeccCCceEEEECCCC---cCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCC
Confidence            66666666667778887532   677766542            11233344444432     34589999999999999


Q ss_pred             CCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCC----cccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCC
Q psy7365         385 DRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG  460 (601)
Q Consensus       385 ~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~----~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsG  460 (601)
                      | +|++||+.|..+++|...++.++.++..|+...|+    +.+++.+..|||||||||+|||||+.+|+||+||||||+
T Consensus       101 p-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSA  179 (253)
T COG1117         101 P-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSA  179 (253)
T ss_pred             C-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccc
Confidence            8 99999999999999987777888899999998885    345678889999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         461 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       461 LD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      |||.+...+-++|.+|+ +.-||+++||+|..+.+++|+.+++..|+++..|+.+++...
T Consensus       180 LDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~  238 (253)
T COG1117         180 LDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTN  238 (253)
T ss_pred             cCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcC
Confidence            99999999999999997 458999999999999999999999999999999999988653

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.97  E-value=1e-30  Score=263.66  Aligned_cols=199  Identities=21%  Similarity=0.270  Sum_probs=160.2

Q ss_pred             cEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc------ccccccccCCCCc
Q psy7365         315 RTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA------PQKSYIGYCPQFD  381 (601)
Q Consensus       315 ~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~------~~~~~ig~v~Q~~  381 (601)
                      ++++   +++++...-++.+++++...   +|++++++       +..|..++.+.+....      ..++.++|+||++
T Consensus        14 ~~~l---~~vs~~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~   87 (241)
T cd03256          14 KKAL---KDVSLSINPGEFVALIGPSG---AGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQF   87 (241)
T ss_pred             cEEE---ecceEEEcCCCEEEEECCCC---CCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccC
Confidence            4555   89999999999999998522   45554432       2334444444333221      2356799999999


Q ss_pred             ccCCCCCHHHHHHHhHH--------hcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEE
Q psy7365         382 ALNDRLTPREHLEFYSR--------VRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIF  453 (601)
Q Consensus       382 ~l~~~lTv~E~L~~~~~--------~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLl  453 (601)
                      .+++.+|+.||+.+...        +.+.......+++.++++.+++.+..++++.+||||||||++||+||+.+|++||
T Consensus        88 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll  167 (241)
T cd03256          88 NLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLIL  167 (241)
T ss_pred             cccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            99999999999976421        1122223344568889999999988899999999999999999999999999999


Q ss_pred             EECCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         454 LDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       454 LDEPTsGLD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      |||||+|||+.+++.+++.|++++++ |+|||++|||++++..+|||+++|++|+++..|+++++.+
T Consensus       168 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  234 (241)
T cd03256         168 ADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTD  234 (241)
T ss_pred             EeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhhH
Confidence            99999999999999999999999764 8999999999999999999999999999999999988743

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0058|consensus

Probab=99.97  E-value=1.8e-31  Score=295.66  Aligned_cols=208  Identities=24%  Similarity=0.363  Sum_probs=168.3

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-  121 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-  121 (601)
                      .++|+||++.|... .+.++++|+||++.|      .||||.  |||     |+. ++|-.++.|++|+|.+||+|+.+ 
T Consensus       465 ~IeF~~VsFaYP~R-p~~~Vlk~lsfti~pGe~vALVGPSGs--GKS-----Tia-sLL~rfY~PtsG~IllDG~~i~~~  535 (716)
T KOG0058|consen  465 VIEFEDVSFAYPTR-PDVPVLKNLSFTIRPGEVVALVGPSGS--GKS-----TIA-SLLLRFYDPTSGRILLDGVPISDI  535 (716)
T ss_pred             eEEEEEeeeecCCC-CCchhhcCceeeeCCCCEEEEECCCCC--CHH-----HHH-HHHHHhcCCCCCeEEECCeehhhc
Confidence            45699999996433 267899999999999      999999  455     454 69999999999999999999976 


Q ss_pred             chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHH-----HHHHHHHHcC--CCcccCCccccCChHHHhh
Q psy7365         122 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL-----EISNMIGDLG--IPHKRTSLANTLSGGMQRK  194 (601)
Q Consensus       122 ~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~g--l~~~~~~~~~~LSgG~~qr  194 (601)
                      ++..+|+.||+|-|+|.+| .-|++|||.|+..  ..+.+++..     .+.+.+..|.  ..-.-+.+..+||||||||
T Consensus       536 ~~~~lr~~Ig~V~QEPvLF-s~sI~eNI~YG~~--~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQR  612 (716)
T KOG0058|consen  536 NHKYLRRKIGLVGQEPVLF-SGSIRENIAYGLD--NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQR  612 (716)
T ss_pred             CHHHHHHHeeeeeccceee-cccHHHHHhcCCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHH
Confidence            5667889999999999999 5699999999887  444444433     2334444442  2233456677999999999


Q ss_pred             hhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhc
Q psy7365         195 LDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMS  274 (601)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  274 (601)
                      +||||||+.|                                                                      
T Consensus       613 IAIARALlr~----------------------------------------------------------------------  622 (716)
T KOG0058|consen  613 IAIARALLRN----------------------------------------------------------------------  622 (716)
T ss_pred             HHHHHHHhcC----------------------------------------------------------------------
Confidence            9876654443                                                                      


Q ss_pred             cCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         275 FVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       275 ~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                         |.+|||||-||+||.++...+.+.|.++      .+++|||++.|+++.+. .+|+|+++++|+++..|+-
T Consensus       623 ---P~VLILDEATSALDaeSE~lVq~aL~~~------~~~rTVlvIAHRLSTV~-~Ad~Ivvi~~G~V~E~G~h  686 (716)
T KOG0058|consen  623 ---PRVLILDEATSALDAESEYLVQEALDRL------MQGRTVLVIAHRLSTVR-HADQIVVIDKGRVVEMGTH  686 (716)
T ss_pred             ---CCEEEEechhhhcchhhHHHHHHHHHHh------hcCCeEEEEehhhhHhh-hccEEEEEcCCeEEecccH
Confidence               4899999999999999999999999886      35799999999999886 7999999999999988854

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.97  E-value=7.5e-31  Score=260.00  Aligned_cols=194  Identities=22%  Similarity=0.377  Sum_probs=158.2

Q ss_pred             CCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc-ccccccccCCCCcccC
Q psy7365         313 SGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA-PQKSYIGYCPQFDALN  384 (601)
Q Consensus       313 ~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~-~~~~~ig~v~Q~~~l~  384 (601)
                      .++.++   +++++...-++.+++++...   .|++++++       +..|+.++.+.+.... ..++.++|+||++.++
T Consensus        11 ~~~~~l---~~is~~i~~Ge~~~l~G~nG---sGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~   84 (213)
T cd03301          11 GNVTAL---DDLNLDIADGEFVVLLGPSG---CGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALY   84 (213)
T ss_pred             CCeeee---eceEEEEcCCcEEEEECCCC---CCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhc
Confidence            344544   88999889999999997522   45555432       2233333333333211 1245799999999988


Q ss_pred             CCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHH
Q psy7365         385 DRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG  464 (601)
Q Consensus       385 ~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~  464 (601)
                      +.+|++||+.+....++....+.++++.++++.+++.+..++++.+||||||||++||+||+.+|+++||||||+|||+.
T Consensus        85 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~  164 (213)
T cd03301          85 PHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK  164 (213)
T ss_pred             cCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence            89999999988765555544555667889999999998899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEec
Q psy7365         465 ARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  512 (601)
Q Consensus       465 ~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G  512 (601)
                      +++.++++|++++++ |+|||++|||++++..+||++++|++|++++.|
T Consensus       165 ~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         165 LRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG  213 (213)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence            999999999999764 899999999999999999999999999998865

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.97  E-value=6.4e-31  Score=296.08  Aligned_cols=192  Identities=26%  Similarity=0.309  Sum_probs=156.7

Q ss_pred             chhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCC
Q psy7365          47 AYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIR  120 (601)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~  120 (601)
                      .++..+++|++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.+++ ++ 
T Consensus       320 ~~~l~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~l~G~NGs--GKSTL------l~~l~G~~~p~~G~i~~~~-~~-  385 (552)
T TIGR03719       320 DKVIEAENLSKGFGD----KLLIDDLSFKLPPGGIVGVIGPNGA--GKSTL------FRMITGQEQPDSGTIKIGE-TV-  385 (552)
T ss_pred             CeEEEEeeEEEEECC----eeeeccceEEEcCCCEEEEECCCCC--CHHHH------HHHHcCCCCCCCeEEEECC-ce-
Confidence            445679999999864    3599999999988      999999  56665      6799999999999999843 21 


Q ss_pred             CchHHhcccEEEEccCC-CCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCc-ccCCccccCChHHHhhhhch
Q psy7365         121 TDMTTIRRSLGVCPQYN-ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPH-KRTSLANTLSGGMQRKLDNV  198 (601)
Q Consensus       121 ~~~~~~~~~ig~v~Q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qr~~~~  198 (601)
                              .+||+||++ .+++.+||.||+.++....+....  ..++.++++.+|+.. ..++++.+|||||||||++|
T Consensus       386 --------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la  455 (552)
T TIGR03719       386 --------KLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLA  455 (552)
T ss_pred             --------EEEEEeCCccccCCCCcHHHHHHhhccccccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHH
Confidence                    599999997 488899999999987543333322  224567899999974 57999999999999999754


Q ss_pred             hhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCC
Q psy7365         199 KVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPA  278 (601)
Q Consensus       199 ~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  278 (601)
                      ++                                      ++.+                                   |
T Consensus       456 ~a--------------------------------------l~~~-----------------------------------p  462 (552)
T TIGR03719       456 KT--------------------------------------LKSG-----------------------------------G  462 (552)
T ss_pred             HH--------------------------------------HhhC-----------------------------------C
Confidence            33                                      2232                                   5


Q ss_pred             cEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecC-Cccc
Q psy7365         279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA-GKLQ  343 (601)
Q Consensus       279 ~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~-GkIv  343 (601)
                      +++||||||+|||+.+++.++++|.++       .| |||++|||++++..+||++++|.+ |++.
T Consensus       463 ~lllLDEPt~~LD~~~~~~l~~~l~~~-------~~-~viivsHd~~~~~~~~d~i~~l~~~~~~~  520 (552)
T TIGR03719       463 NVLLLDEPTNDLDVETLRALEEALLEF-------AG-CAVVISHDRWFLDRIATHILAFEGDSHVE  520 (552)
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHC-------CC-eEEEEeCCHHHHHHhCCEEEEEECCCeEE
Confidence            899999999999999999999999875       24 899999999999999999999986 4554

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.97  E-value=5e-31  Score=261.99  Aligned_cols=184  Identities=22%  Similarity=0.318  Sum_probs=152.0

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc------ccccccccCCCCcccCCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA------PQKSYIGYCPQFDALNDRLT  388 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~------~~~~~ig~v~Q~~~l~~~lT  388 (601)
                      +++++...-++.+++++...   .|++++++       +..|+.++.+.+....      ..++.++|+||++.+++.+|
T Consensus        20 ~~isl~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   96 (216)
T TIGR00960        20 DNLNFHITKGEMVFLVGHSG---AGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRT   96 (216)
T ss_pred             EeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCcccccccc
Confidence            88888888999999997522   45555433       2333333333332211      13467999999999999999


Q ss_pred             HHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHH
Q psy7365         389 PREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRF  468 (601)
Q Consensus       389 v~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~  468 (601)
                      +.||+.+....++.......+++.++++.+++.+..++++.+||||||||++||+||+.+|++|||||||+|||+.+++.
T Consensus        97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~  176 (216)
T TIGR00960        97 VYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRD  176 (216)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHH
Confidence            99999887655555444455678999999999988999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEE
Q psy7365         469 LWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF  508 (601)
Q Consensus       469 i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~i  508 (601)
                      ++++|++++++|+|||++|||++++..+|||+++|++|++
T Consensus       177 l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       177 IMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL  216 (216)
T ss_pred             HHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            9999999977799999999999999999999999999974

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.97  E-value=8e-31  Score=261.37  Aligned_cols=189  Identities=21%  Similarity=0.294  Sum_probs=156.2

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcccccccccCCCCcccCCCCCHHHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLE  394 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~~~~~ig~v~Q~~~l~~~lTv~E~L~  394 (601)
                      +++++...-++.+++++...   .|++++++       +..|..++.+.+..  ..++.++|+||++.+++.+|++||+.
T Consensus        21 ~~vs~~i~~G~~~~i~G~nG---sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e~l~   95 (220)
T cd03293          21 EDISLSVEEGEFVALVGPSG---CGKSTLLRIIAGLERPTSGEVLVDGEPVT--GPGPDRGYVFQQDALLPWLTVLDNVA   95 (220)
T ss_pred             eceeEEEeCCcEEEEECCCC---CCHHHHHHHHhCCCCCCceEEEECCEECc--cccCcEEEEecccccccCCCHHHHHH
Confidence            88898888999999997522   45555433       22333333333322  23567999999999999999999998


Q ss_pred             HhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q psy7365         395 FYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE  474 (601)
Q Consensus       395 ~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~  474 (601)
                      +....++.+.....+.+.++++.+++.+..++++.+||||||||++||+||+.+|+++||||||+|||+.+++.++++|+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~  175 (220)
T cd03293          96 LGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELL  175 (220)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHH
Confidence            87655555444455678899999999988899999999999999999999999999999999999999999999999999


Q ss_pred             HHHh-CCcEEEEEccChhHHHhhCCEEEEEe--CCEEEEecCHH
Q psy7365         475 RAVS-EGRCVILTSHNMEECEALCTKLTIMV--NGQFTCLGSAT  515 (601)
Q Consensus       475 ~l~~-~G~tVllsTHdl~e~~~l~drv~iL~--~G~iv~~G~~~  515 (601)
                      ++.+ .|+|||++||+++++..+||++++|+  +|+++..++.+
T Consensus       176 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~  219 (220)
T cd03293         176 DIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD  219 (220)
T ss_pred             HHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence            9865 48999999999999999999999999  79999887653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.97  E-value=5.8e-31  Score=297.42  Aligned_cols=202  Identities=23%  Similarity=0.311  Sum_probs=160.6

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++++++.|+.  .+.++++|+||++++      +|||||  |||||      .++|+|+++|++|+|.++|.++.. +
T Consensus       314 I~~~~v~~~y~~--~~~~~l~~i~~~i~~G~~~~ivG~sGs--GKSTL------l~ll~g~~~p~~G~i~~~g~~~~~~~  383 (569)
T PRK10789        314 LDVNIRQFTYPQ--TDHPALENVNFTLKPGQMLGICGPTGS--GKSTL------LSLIQRHFDVSEGDIRFHDIPLTKLQ  383 (569)
T ss_pred             EEEEEEEEECCC--CCCccccCeeEEECCCCEEEEECCCCC--CHHHH------HHHHhcccCCCCCEEEECCEEHhhCC
Confidence            458999988753  345699999999988      999999  56655      579999999999999999998864 4


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCC-----------CcccCCccccCChHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGI-----------PHKRTSLANTLSGGM  191 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgG~  191 (601)
                      ....++.++|+||+|.+|.. |++||+.++...  .+.+    ++.++++..++           ....+....+|||||
T Consensus       384 ~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~--~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq  456 (569)
T PRK10789        384 LDSWRSRLAVVSQTPFLFSD-TVANNIALGRPD--ATQQ----EIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQ  456 (569)
T ss_pred             HHHHHhheEEEccCCeeccc-cHHHHHhcCCCC--CCHH----HHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHH
Confidence            55678899999999999965 999999876321  2222    23344444443           334455667899999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||+++||+|+.+                                                                   
T Consensus       457 ~qRi~lARall~~-------------------------------------------------------------------  469 (569)
T PRK10789        457 KQRISIARALLLN-------------------------------------------------------------------  469 (569)
T ss_pred             HHHHHHHHHHhcC-------------------------------------------------------------------
Confidence            9999866544333                                                                   


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                            |+++||||||++||+.+...+++.|+++      .+|+|+|++||+++... .||++++|++|+++..|+.
T Consensus       470 ------~~illlDEpts~LD~~~~~~i~~~l~~~------~~~~tii~itH~~~~~~-~~d~i~~l~~G~i~~~g~~  533 (569)
T PRK10789        470 ------AEILILDDALSAVDGRTEHQILHNLRQW------GEGRTVIISAHRLSALT-EASEILVMQHGHIAQRGNH  533 (569)
T ss_pred             ------CCEEEEECccccCCHHHHHHHHHHHHHH------hCCCEEEEEecchhHHH-cCCEEEEEeCCEEEEecCH
Confidence                  5899999999999999999999999886      25899999999998765 6999999999999887754

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.97  E-value=2.3e-31  Score=300.42  Aligned_cols=203  Identities=24%  Similarity=0.359  Sum_probs=161.1

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++||++.|..  ...+.++|+||++.+      .||||+  |||||      .++|+|+++|++|+|.++|.++.. +
T Consensus       331 i~~~~v~f~y~~--~~~~il~~inl~i~~G~~v~IvG~sGs--GKSTL------l~lL~gl~~~~~G~I~i~g~~i~~~~  400 (571)
T TIGR02203       331 VEFRNVTFRYPG--RDRPALDSISLVIEPGETVALVGRSGS--GKSTL------VNLIPRFYEPDSGQILLDGHDLADYT  400 (571)
T ss_pred             EEEEEEEEEcCC--CCCccccCeeEEecCCCEEEEECCCCC--CHHHH------HHHHHhccCCCCCeEEECCEeHHhcC
Confidence            448999999743  235689999999988      999999  56665      579999999999999999999854 4


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCccc-----------CCccccCChHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKR-----------TSLANTLSGGM  191 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG~  191 (601)
                      ...+++.++|+||+|.+|. -|++||+.++.. ...+    ++++.++++.+|+.+..           ......|||||
T Consensus       401 ~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~-~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq  474 (571)
T TIGR02203       401 LASLRRQVALVSQDVVLFN-DTIANNIAYGRT-EQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQ  474 (571)
T ss_pred             HHHHHhhceEEccCccccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHH
Confidence            5567889999999999885 599999987631 0122    23455666666654332           23345799999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||+++||+|+.+                                                                   
T Consensus       475 rQRiaLARall~~-------------------------------------------------------------------  487 (571)
T TIGR02203       475 RQRLAIARALLKD-------------------------------------------------------------------  487 (571)
T ss_pred             HHHHHHHHHHhcC-------------------------------------------------------------------
Confidence            9999876654433                                                                   


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                            |++++||||||+||+.+.+.+.+.|.++      ..++|+|++||+.+.. ..||+|+++++|+++..|+.
T Consensus       488 ------~~illLDEpts~LD~~~~~~i~~~L~~~------~~~~tiIiitH~~~~~-~~~D~ii~l~~g~i~~~g~~  551 (571)
T TIGR02203       488 ------APILILDEATSALDNESERLVQAALERL------MQGRTTLVIAHRLSTI-EKADRIVVMDDGRIVERGTH  551 (571)
T ss_pred             ------CCEEEEeCccccCCHHHHHHHHHHHHHH------hCCCEEEEEehhhHHH-HhCCEEEEEeCCEEEeeCCH
Confidence                  4899999999999999999999999876      2579999999999775 57999999999999877654

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=7.3e-32  Score=289.86  Aligned_cols=204  Identities=25%  Similarity=0.390  Sum_probs=167.5

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-  121 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-  121 (601)
                      ...++|||++|  ++...++++|+||++.+      +|+|||  |||||      ..+|.|.++|++|+|+++|.++.. 
T Consensus       336 ~l~~~~vsF~y--~~~~~~~L~~~~l~l~~GEkvAIlG~SGs--GKSTl------lqLl~~~~~~~~G~i~~~g~~~~~l  405 (573)
T COG4987         336 ALELRNVSFTY--PGQQTKALKNFNLTLAQGEKVAILGRSGS--GKSTL------LQLLAGAWDPQQGSITLNGVEIASL  405 (573)
T ss_pred             eeeeccceeec--CCCccchhhccceeecCCCeEEEECCCCC--CHHHH------HHHHHhccCCCCCeeeECCcChhhC
Confidence            45699999995  55667899999999988      999999  56665      579999999999999999999875 


Q ss_pred             chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCccc-----------CCccccCChH
Q psy7365         122 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKR-----------TSLANTLSGG  190 (601)
Q Consensus       122 ~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG  190 (601)
                      +...++..+++++|.+.+| .-|+++|+.+....  .+    .+.+.++++.+||++..           +.-...||||
T Consensus       406 ~~~~~~e~i~vl~Qr~hlF-~~Tlr~NL~lA~~~--As----DEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGG  478 (573)
T COG4987         406 DEQALRETISVLTQRVHLF-SGTLRDNLRLANPD--AS----DEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGG  478 (573)
T ss_pred             ChhhHHHHHhhhccchHHH-HHHHHHHHhhcCCC--CC----HHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCch
Confidence            3345788999999999998 56999999875432  22    23455677888876543           3345789999


Q ss_pred             HHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHH
Q psy7365         191 MQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVL  270 (601)
Q Consensus       191 ~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~  270 (601)
                      |+||++|||++++|                                                                  
T Consensus       479 E~rRLAlAR~LL~d------------------------------------------------------------------  492 (573)
T COG4987         479 ERRRLALARALLHD------------------------------------------------------------------  492 (573)
T ss_pred             HHHHHHHHHHHHcC------------------------------------------------------------------
Confidence            99999877665544                                                                  


Q ss_pred             HhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         271 FAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       271 ~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                             ++++||||||.||||.+.+++.+++.+-      .+|+|+|++||++..+. .||||++|++|+++..|+..
T Consensus       493 -------apl~lLDEPTegLD~~TE~~vL~ll~~~------~~~kTll~vTHrL~~le-~~drIivl~~Gkiie~G~~~  557 (573)
T COG4987         493 -------APLWLLDEPTEGLDPITERQVLALLFEH------AEGKTLLMVTHRLRGLE-RMDRIIVLDNGKIIEEGTHA  557 (573)
T ss_pred             -------CCeEEecCCcccCChhhHHHHHHHHHHH------hcCCeEEEEecccccHh-hcCEEEEEECCeeeecCCHH
Confidence                   3699999999999999999999998763      46999999999998887 79999999999999888654

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.97  E-value=4.9e-31  Score=251.66  Aligned_cols=153  Identities=22%  Similarity=0.381  Sum_probs=130.3

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc--
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD--  122 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~--  122 (601)
                      .+++|++.|++    .++++++||++.+      +||||+  |||||      .++|+|+++|++|+|.++|.++...  
T Consensus         2 ~~~~l~~~~~~----~~vl~~i~~~i~~Ge~~~l~G~nGs--GKSTL------l~~i~G~~~~~~G~v~~~g~~~~~~~~   69 (163)
T cd03216           2 ELRGITKRFGG----VKALDGVSLSVRRGEVHALLGENGA--GKSTL------MKILSGLYKPDSGEILVDGKEVSFASP   69 (163)
T ss_pred             EEEEEEEEECC----eEEEeeeEEEEeCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCeEEEECCEECCcCCH
Confidence            37899999853    3599999999988      999999  56665      5799999999999999999988642  


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhc
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWF  202 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~  202 (601)
                      ....++.+||+||                                                   ||||||||+++||+|+
T Consensus        70 ~~~~~~~i~~~~q---------------------------------------------------LS~G~~qrl~laral~   98 (163)
T cd03216          70 RDARRAGIAMVYQ---------------------------------------------------LSVGERQMVEIARALA   98 (163)
T ss_pred             HHHHhcCeEEEEe---------------------------------------------------cCHHHHHHHHHHHHHh
Confidence            2345678999999                                                   9999999998654332


Q ss_pred             chhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEE
Q psy7365         203 NNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVI  282 (601)
Q Consensus       203 ~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~li  282 (601)
                                                            .+                                   |+++|
T Consensus        99 --------------------------------------~~-----------------------------------p~ill  105 (163)
T cd03216          99 --------------------------------------RN-----------------------------------ARLLI  105 (163)
T ss_pred             --------------------------------------cC-----------------------------------CCEEE
Confidence                                                  22                                   58999


Q ss_pred             EecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccc
Q psy7365         283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQC  344 (601)
Q Consensus       283 LDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~  344 (601)
                      |||||++||+.+++.+++.|+++.     .+|.|+|++||+++++...||++++|.+|+++.
T Consensus       106 lDEP~~~LD~~~~~~l~~~l~~~~-----~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~  162 (163)
T cd03216         106 LDEPTAALTPAEVERLFKVIRRLR-----AQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG  162 (163)
T ss_pred             EECCCcCCCHHHHHHHHHHHHHHH-----HCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            999999999999999999999872     358999999999999999999999999998753

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=5.9e-31  Score=273.58  Aligned_cols=194  Identities=22%  Similarity=0.275  Sum_probs=160.2

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-------cccccccccCCCCc--ccCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-------APQKSYIGYCPQFD--ALND  385 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-------~~~~~~ig~v~Q~~--~l~~  385 (601)
                      +++++...-++.+++++...   .|++++++       +..|...+.+.++..       ...++++||+||++  .++ 
T Consensus        24 ~~vsl~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-   99 (290)
T PRK13634         24 YDVNVSIPSGSYVAIIGHTG---SGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF-   99 (290)
T ss_pred             eeEEEEEcCCCEEEEECCCC---CcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh-
Confidence            89999999999999997522   45554432       233444444443321       12356799999986  344 


Q ss_pred             CCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCC-cccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHH
Q psy7365         386 RLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG  464 (601)
Q Consensus       386 ~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~-~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~  464 (601)
                      ..||+||+.|.....+.+..+..++++++++.++|. +..++++.+||||||||++||+||+.+|++|||||||+|||+.
T Consensus       100 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~  179 (290)
T PRK13634        100 EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK  179 (290)
T ss_pred             hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence            479999999876555666666667889999999997 6789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         465 ARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       465 ~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ++..++++|++++++ |.|||++|||++++..+||||++|++|++++.|+++++.+
T Consensus       180 ~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  235 (290)
T PRK13634        180 GRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA  235 (290)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence            999999999999765 9999999999999999999999999999999999998754

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.97  E-value=4.4e-31  Score=260.91  Aligned_cols=194  Identities=24%  Similarity=0.321  Sum_probs=162.1

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCc----ccccccccCCCCc--ccCCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSA----PQKSYIGYCPQFD--ALNDRLT  388 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~----~~~~~ig~v~Q~~--~l~~~lT  388 (601)
                      +++++....+..+.+++...   +|++++.       ++..|..++.|......    ..++.|.+|||||  ++.|..|
T Consensus        24 ~~VS~~i~~Ge~lgivGeSG---sGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t  100 (252)
T COG1124          24 NNVSLEIERGETLGIVGESG---SGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT  100 (252)
T ss_pred             cceeEEecCCCEEEEEcCCC---CCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence            77788888899999997532   5555432       34455555544333221    2467799999997  4889999


Q ss_pred             HHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCC-cccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHH
Q psy7365         389 PREHLEFYSRVRNLPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARR  467 (601)
Q Consensus       389 v~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~-~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~  467 (601)
                      |++.|.-.....|.+..  ++++.++|+.+||. .+++|+|.+|||||+||++|||||+.+|++||||||||+||+..+.
T Consensus       101 v~~~l~Epl~~~~~~~~--~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa  178 (252)
T COG1124         101 VGRILSEPLRPHGLSKS--QQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQA  178 (252)
T ss_pred             HHHHHhhhhccCCccHH--HHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHH
Confidence            99999877666666543  34599999999997 6889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         468 FLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       468 ~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      ++|+++.+++++ |.|+|++|||+..++.+||||++|++|+++..++.+++...
T Consensus       179 ~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~  232 (252)
T COG1124         179 QILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH  232 (252)
T ss_pred             HHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence            999999999865 89999999999999999999999999999999999998765

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.97  E-value=7.2e-31  Score=251.23  Aligned_cols=156  Identities=30%  Similarity=0.382  Sum_probs=131.1

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTT  125 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~  125 (601)
                      ++++++.|++   +.++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.        
T Consensus         3 ~~~~~~~~~~---~~~~l~~i~l~i~~Ge~~~i~G~nGs--GKSTL------l~~l~G~~~~~~G~i~~~~~--------   63 (166)
T cd03223           3 LENLSLATPD---GRVLLKDLSFEIKPGDRLLITGPSGT--GKSSL------FRALAGLWPWGSGRIGMPEG--------   63 (166)
T ss_pred             EEEEEEEcCC---CCeeeecCeEEECCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCceEEECCC--------
Confidence            7889998742   24599999999988      999999  56665      57999999999999999873        


Q ss_pred             hcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchh
Q psy7365         126 IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNK  205 (601)
Q Consensus       126 ~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~  205 (601)
                        +.++|+||++.++ ..|+.||+.++                              .+.+||||||||+++||++    
T Consensus        64 --~~i~~~~q~~~~~-~~tv~~nl~~~------------------------------~~~~LS~G~~~rv~laral----  106 (166)
T cd03223          64 --EDLLFLPQRPYLP-LGTLREQLIYP------------------------------WDDVLSGGEQQRLAFARLL----  106 (166)
T ss_pred             --ceEEEECCCCccc-cccHHHHhhcc------------------------------CCCCCCHHHHHHHHHHHHH----
Confidence              5799999998765 67999999753                              4689999999999865432    


Q ss_pred             hHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEec
Q psy7365         206 AWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDE  285 (601)
Q Consensus       206 ~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDE  285 (601)
                                                        +.+                                   |+++||||
T Consensus       107 ----------------------------------~~~-----------------------------------p~~lllDE  117 (166)
T cd03223         107 ----------------------------------LHK-----------------------------------PKFVFLDE  117 (166)
T ss_pred             ----------------------------------HcC-----------------------------------CCEEEEEC
Confidence                                              222                                   58999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCc
Q psy7365         286 PTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK  341 (601)
Q Consensus       286 PtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~Gk  341 (601)
                      ||++||+.+++.+.++++++        +.|+|++||+.++. ..||++++|++|.
T Consensus       118 Pt~~LD~~~~~~l~~~l~~~--------~~tiiivsh~~~~~-~~~d~i~~l~~~~  164 (166)
T cd03223         118 ATSALDEESEDRLYQLLKEL--------GITVISVGHRPSLW-KFHDRVLDLDGEG  164 (166)
T ss_pred             CccccCHHHHHHHHHHHHHh--------CCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence            99999999999999999864        58999999999865 6999999998754

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.97  E-value=7.8e-31  Score=295.58  Aligned_cols=192  Identities=26%  Similarity=0.303  Sum_probs=156.6

Q ss_pred             chhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCC
Q psy7365          47 AYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIR  120 (601)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~  120 (601)
                      .++..+++|++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.+++ ++ 
T Consensus       322 ~~~l~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~l~G~NGs--GKSTL------l~~i~G~~~p~~G~i~~~~-~~-  387 (556)
T PRK11819        322 DKVIEAENLSKSFGD----RLLIDDLSFSLPPGGIVGIIGPNGA--GKSTL------FKMITGQEQPDSGTIKIGE-TV-  387 (556)
T ss_pred             CeEEEEEeEEEEECC----eeeecceeEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCeEEEECC-ce-
Confidence            345679999999864    3599999999988      999999  56665      6799999999999999843 21 


Q ss_pred             CchHHhcccEEEEccCC-CCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCc-ccCCccccCChHHHhhhhch
Q psy7365         121 TDMTTIRRSLGVCPQYN-ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPH-KRTSLANTLSGGMQRKLDNV  198 (601)
Q Consensus       121 ~~~~~~~~~ig~v~Q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qr~~~~  198 (601)
                              .+||+||++ .+++.+||.||+.++....+.....  .++.++++.+|+.. ..++++++||||||||+++|
T Consensus       388 --------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la  457 (556)
T PRK11819        388 --------KLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNRE--IPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLA  457 (556)
T ss_pred             --------EEEEEeCchhhcCCCCCHHHHHHhhcccccccccH--HHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHH
Confidence                    599999997 6888999999999875443332222  23457899999974 57999999999999999754


Q ss_pred             hhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCC
Q psy7365         199 KVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPA  278 (601)
Q Consensus       199 ~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  278 (601)
                      +++                                      +.                                   +|
T Consensus       458 ~al--------------------------------------~~-----------------------------------~p  464 (556)
T PRK11819        458 KTL--------------------------------------KQ-----------------------------------GG  464 (556)
T ss_pred             HHH--------------------------------------hc-----------------------------------CC
Confidence            332                                      22                                   25


Q ss_pred             cEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecC-Cccc
Q psy7365         279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA-GKLQ  343 (601)
Q Consensus       279 ~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~-GkIv  343 (601)
                      ++|||||||+|||+.++..++++|.++       .| |||++|||++++..+||++++|.+ |++.
T Consensus       465 ~lllLDEPt~~LD~~~~~~l~~~l~~~-------~~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~  522 (556)
T PRK11819        465 NVLLLDEPTNDLDVETLRALEEALLEF-------PG-CAVVISHDRWFLDRIATHILAFEGDSQVE  522 (556)
T ss_pred             CEEEEcCCCCCCCHHHHHHHHHHHHhC-------CC-eEEEEECCHHHHHHhCCEEEEEECCCeEE
Confidence            899999999999999999999999875       24 899999999999999999999986 6654

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.97  E-value=1.7e-30  Score=262.88  Aligned_cols=195  Identities=23%  Similarity=0.406  Sum_probs=160.8

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC---cccccccccCCCCcccCCCCCHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS---APQKSYIGYCPQFDALNDRLTPRE  391 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~---~~~~~~ig~v~Q~~~l~~~lTv~E  391 (601)
                      +++++....++.+++++...   .|++++++       +..|+..+.+.+...   ...++.++|+||++.+++.+|++|
T Consensus        18 ~~is~~i~~Ge~~~i~G~nG---sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e   94 (242)
T cd03295          18 NNLNLEIAKGEFLVLIGPSG---SGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEE   94 (242)
T ss_pred             eeeEEEECCCCEEEEECCCC---CCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHH
Confidence            88999999999999998522   45554432       223333333333221   123467999999999999999999


Q ss_pred             HHHHhHHhcCCChhHHHHHHHHHHHHcCCCc--ccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHH
Q psy7365         392 HLEFYSRVRNLPSVLLNTIVNESLNKFALGH--YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFL  469 (601)
Q Consensus       392 ~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~--~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i  469 (601)
                      |+.++..+.+.......+++.++++.+++.+  ..++++.+||||||||++||+||+.+|+++||||||+|||+.+++.+
T Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l  174 (242)
T cd03295          95 NIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL  174 (242)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence            9988765555544455567889999999985  78999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         470 WTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       470 ~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ++.|++++++ |+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus       175 ~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  225 (242)
T cd03295         175 QEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR  225 (242)
T ss_pred             HHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence            9999999765 8999999999999999999999999999999999988753

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.97  E-value=5.2e-31  Score=304.28  Aligned_cols=207  Identities=25%  Similarity=0.383  Sum_probs=163.1

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++++++.|+.  ...++++|+||++++      +|||||  |||||      .++|+|+++|++|+|+++|.++.. +
T Consensus       456 i~~~~vsf~y~~--~~~~il~~i~l~i~~G~~vaivG~sGs--GKSTL------~~ll~g~~~p~~G~I~idg~~i~~~~  525 (694)
T TIGR01846       456 ITFENIRFRYAP--DSPEVLSNLNLDIKPGEFIGIVGPSGS--GKSTL------TKLLQRLYTPQHGQVLVDGVDLAIAD  525 (694)
T ss_pred             EEEEEEEEEcCC--CCccccccceEEECCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCceEEECCEehhhCC
Confidence            458999999752  335689999999988      999999  56655      579999999999999999999865 4


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHH-----HHHHHHHc--CCCcccCCccccCChHHHhhh
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIGDL--GIPHKRTSLANTLSGGMQRKL  195 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LSgG~~qr~  195 (601)
                      ...+|+.+|||||++.+|. .|++||+.++..  ..+.++..+.     +.+.++.+  |++........+||||||||+
T Consensus       526 ~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri  602 (694)
T TIGR01846       526 PAWLRRQMGVVLQENVLFS-RSIRDNIALCNP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRI  602 (694)
T ss_pred             HHHHHHhCeEEccCCeehh-hhHHHHHhcCCC--CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHH
Confidence            5667889999999999885 599999987532  2333332221     22334443  445445566788999999999


Q ss_pred             hchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhcc
Q psy7365         196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSF  275 (601)
Q Consensus       196 ~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  275 (601)
                      ++||||+                                      .+                                 
T Consensus       603 ~lARall--------------------------------------~~---------------------------------  611 (694)
T TIGR01846       603 AIARALV--------------------------------------GN---------------------------------  611 (694)
T ss_pred             HHHHHHH--------------------------------------hC---------------------------------
Confidence            8655433                                      22                                 


Q ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       276 ~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                        |+++||||||++||+.+...+.+.|.++      ..++|+|++||+++.+. .||++++|++|+++..|+..
T Consensus       612 --~~ililDEpts~LD~~~~~~i~~~l~~~------~~~~t~i~itH~~~~~~-~~d~ii~l~~G~i~~~g~~~  676 (694)
T TIGR01846       612 --PRILIFDEATSALDYESEALIMRNMREI------CRGRTVIIIAHRLSTVR-ACDRIIVLEKGQIAESGRHE  676 (694)
T ss_pred             --CCEEEEECCCcCCCHHHHHHHHHHHHHH------hCCCEEEEEeCChHHHH-hCCEEEEEeCCEEEEeCCHH
Confidence              5899999999999999999999999886      25799999999998875 59999999999999887643

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.97  E-value=1.3e-30  Score=275.74  Aligned_cols=196  Identities=21%  Similarity=0.280  Sum_probs=162.4

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc------ccccccccCCCCc--ccCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA------PQKSYIGYCPQFD--ALNDR  386 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~------~~~~~ig~v~Q~~--~l~~~  386 (601)
                      +++++...-++.+++++...   +|++++++       ...|+.++.|.++...      ..+++++|+||++  .+++.
T Consensus        38 ~~vsl~i~~Ge~~~lvG~sG---sGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~  114 (331)
T PRK15079         38 DGVTLRLYEGETLGVVGESG---CGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPR  114 (331)
T ss_pred             eeEEEEEcCCCEEEEECCCC---CCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCC
Confidence            88999999999999997522   45544332       3334444445444321      1356799999997  58889


Q ss_pred             CCHHHHHHHhHHhc--CCChhHHHHHHHHHHHHcCCC-cccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCH
Q psy7365         387 LTPREHLEFYSRVR--NLPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP  463 (601)
Q Consensus       387 lTv~E~L~~~~~~~--g~~~~~~~~~~~~lLe~~~L~-~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~  463 (601)
                      +|+.||+.+....+  +.+..+.++++.++++.++|. +..++++.+||||||||++||+||+.+|++||+||||+|||+
T Consensus       115 ~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~  194 (331)
T PRK15079        115 MTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDV  194 (331)
T ss_pred             CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence            99999998765443  345556667788999999995 578999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         464 GARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       464 ~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      .++.+++++|+++.++ |.|+|++|||++++..+||||++|++|+++..|+++++...
T Consensus       195 ~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~~~  252 (331)
T PRK15079        195 SIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHN  252 (331)
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcC
Confidence            9999999999999765 99999999999999999999999999999999999998654

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.97  E-value=1.4e-30  Score=262.96  Aligned_cols=200  Identities=24%  Similarity=0.291  Sum_probs=162.6

Q ss_pred             CcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-----cccccccccCCCCc
Q psy7365         314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-----APQKSYIGYCPQFD  381 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-----~~~~~~ig~v~Q~~  381 (601)
                      ++.++   +++++...-++.+++++...   .|++++++       +..|+.++.+.+...     ...++.++|+||++
T Consensus        13 ~~~il---~~~s~~i~~Ge~~~l~G~nG---sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~   86 (240)
T PRK09493         13 PTQVL---HNIDLNIDQGEVVVIIGPSG---SGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQF   86 (240)
T ss_pred             CeEEe---eeeeEEEcCCcEEEEECCCC---CCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEeccc
Confidence            44554   88999888999999997522   44444332       233444444433321     12356799999999


Q ss_pred             ccCCCCCHHHHHHHhHH-hcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCC
Q psy7365         382 ALNDRLTPREHLEFYSR-VRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG  460 (601)
Q Consensus       382 ~l~~~lTv~E~L~~~~~-~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsG  460 (601)
                      .+++.+|++||+.+... .++....+..+++.++++.+++.+..++++.+||||||||++||+||+.+|+++||||||+|
T Consensus        87 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~  166 (240)
T PRK09493         87 YLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSA  166 (240)
T ss_pred             ccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence            99999999999987532 23444444556788999999999888999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         461 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       461 LD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ||+.++..++++|++++++|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus       167 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  225 (240)
T PRK09493        167 LDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK  225 (240)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence            99999999999999998779999999999999999999999999999999999988753

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.97  E-value=1.2e-30  Score=259.92  Aligned_cols=196  Identities=39%  Similarity=0.723  Sum_probs=161.9

Q ss_pred             cEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC--cccccccccCCCCcccCC
Q psy7365         315 RTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS--APQKSYIGYCPQFDALND  385 (601)
Q Consensus       315 ~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~--~~~~~~ig~v~Q~~~l~~  385 (601)
                      ++++   +++++...-++.+++++...   .|++++++       +..|..++.+.+...  ...++.+||+||++.+++
T Consensus        15 ~~il---~~is~~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~   88 (220)
T cd03263          15 KPAV---DDLSLNVYKGEIFGLLGHNG---AGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFD   88 (220)
T ss_pred             ceee---cceEEEEcCCcEEEEECCCC---CCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccc
Confidence            4555   89999999999999997522   45554432       233443333333221  123567999999999998


Q ss_pred             CCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHH
Q psy7365         386 RLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGA  465 (601)
Q Consensus       386 ~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~  465 (601)
                      .+|++||+.+....++.+.....+++.++++.++|.+..++++.+||+|||||++||+||+.+|++|||||||+|||+.+
T Consensus        89 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~  168 (220)
T cd03263          89 ELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS  168 (220)
T ss_pred             cCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHH
Confidence            99999999987766665554555678899999999988899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHH
Q psy7365         466 RRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  517 (601)
Q Consensus       466 ~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L  517 (601)
                      ++.+++.|+++++ ++|||++||+++++..+||++++|++|+++..|+++++
T Consensus       169 ~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  219 (220)
T cd03263         169 RRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL  219 (220)
T ss_pred             HHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence            9999999999865 59999999999999999999999999999999998875

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.1e-30  Score=269.37  Aligned_cols=194  Identities=20%  Similarity=0.260  Sum_probs=159.7

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCc---ccccccccCCCCcc-cCCCCCHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSA---PQKSYIGYCPQFDA-LNDRLTPR  390 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~---~~~~~ig~v~Q~~~-l~~~lTv~  390 (601)
                      +++++...-++.+++++...   +|+++++       ++..|+.++.+.+....   ..++.+||+||++. .++..|+.
T Consensus        22 ~~isl~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~   98 (274)
T PRK13647         22 KGLSLSIPEGSKTALLGPNG---AGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVW   98 (274)
T ss_pred             eeEEEEEcCCCEEEEECCCC---CcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHH
Confidence            88888888999999997522   4555443       23334444444443221   23467999999973 45568999


Q ss_pred             HHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHH
Q psy7365         391 EHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW  470 (601)
Q Consensus       391 E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~  470 (601)
                      ||+.|.....+......++++.++++.++|.+..++++.+||||||||++||+||+.+|++|||||||+|||+.++..++
T Consensus        99 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~  178 (274)
T PRK13647         99 DDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLM  178 (274)
T ss_pred             HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHH
Confidence            99987655445555555667899999999998999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHH
Q psy7365         471 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  518 (601)
Q Consensus       471 ~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~  518 (601)
                      ++|++++++|+|||++|||++++.++|||+++|++|++++.|+++++.
T Consensus       179 ~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  226 (274)
T PRK13647        179 EILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT  226 (274)
T ss_pred             HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence            999999877999999999999999999999999999999999997653

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1e-30  Score=271.51  Aligned_cols=194  Identities=23%  Similarity=0.330  Sum_probs=161.8

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-------cccccccccCCCCc--ccCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-------APQKSYIGYCPQFD--ALND  385 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-------~~~~~~ig~v~Q~~--~l~~  385 (601)
                      +++++...-++++++++...   .|++++++       +..|..++.+.+...       ...++.+||+||++  .++.
T Consensus        23 ~~vsl~i~~Ge~v~i~G~nG---sGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~   99 (288)
T PRK13643         23 FDIDLEVKKGSYTALIGHTG---SGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE   99 (288)
T ss_pred             eeeEEEEcCCCEEEEECCCC---ChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc
Confidence            88999999999999998522   45555432       334444444444321       12356799999987  4554


Q ss_pred             CCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCC-cccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHH
Q psy7365         386 RLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG  464 (601)
Q Consensus       386 ~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~-~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~  464 (601)
                       .|+.||+.|....++.+..+.++++.++++.++|. +..++++.+||||||||++||+||+.+|++|||||||+|||+.
T Consensus       100 -~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~  178 (288)
T PRK13643        100 -ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK  178 (288)
T ss_pred             -chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHH
Confidence             69999999876656666666677889999999996 5789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         465 ARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       465 ~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      +++.++++|++++++|+|||++|||++++..+||||++|++|++++.|+++++..
T Consensus       179 ~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  233 (288)
T PRK13643        179 ARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ  233 (288)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence            9999999999998779999999999999999999999999999999999999854

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.97  E-value=2.1e-30  Score=263.16  Aligned_cols=195  Identities=23%  Similarity=0.274  Sum_probs=159.0

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-----------cccccccccCCCCccc
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-----------APQKSYIGYCPQFDAL  383 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-----------~~~~~~ig~v~Q~~~l  383 (601)
                      +++++...-++.+++++...   .|++++++       +..|..++.+.+...           ...++.++|+||++.+
T Consensus        20 ~~vs~~i~~Ge~~~i~G~nG---sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~   96 (250)
T PRK11264         20 HGIDLEVKPGEVVAIIGPSG---SGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNL   96 (250)
T ss_pred             ccceEEEcCCCEEEEECCCC---CCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCccc
Confidence            89999999999999997522   45554432       222333333332211           1234679999999999


Q ss_pred             CCCCCHHHHHHHhHH-hcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCC
Q psy7365         384 NDRLTPREHLEFYSR-VRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD  462 (601)
Q Consensus       384 ~~~lTv~E~L~~~~~-~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD  462 (601)
                      ++.+|+.||+.+... ..+.......+++.++++.++|.+..++++.+||||||||++||+||+.+|++|||||||+|||
T Consensus        97 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD  176 (250)
T PRK11264         97 FPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALD  176 (250)
T ss_pred             CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence            999999999987533 2333444455678899999999988899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         463 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       463 ~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      +.+++.++++|+++.++|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus       177 ~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  233 (250)
T PRK11264        177 PELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA  233 (250)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence            999999999999998779999999999999999999999999999999999988754

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.97  E-value=1.3e-30  Score=257.79  Aligned_cols=187  Identities=23%  Similarity=0.429  Sum_probs=155.5

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcccccccccCCCCcccCCCCCHHHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLE  394 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~~~~~ig~v~Q~~~l~~~lTv~E~L~  394 (601)
                      +++++...-++.+++++...   +|++++++       +..|+.++.+.+... ..++.++|+||++.+++.+|++||+.
T Consensus        17 ~~v~~~i~~G~~~~i~G~nG---sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~   92 (210)
T cd03269          17 DDISFSVEKGEIFGLLGPNG---AGKTTTIRMILGIILPDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQLV   92 (210)
T ss_pred             eeeEEEEcCCcEEEEECCCC---CCHHHHHHHHhCCCCCCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHHHHH
Confidence            88888888999999997522   45555433       223333333333221 23567999999999999999999998


Q ss_pred             HhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q psy7365         395 FYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE  474 (601)
Q Consensus       395 ~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~  474 (601)
                      +....++.+.....+.+.++++.+++.+..++++.+||||||||++||+||+.+|+++||||||+|||+.+++.+++.|+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~  172 (210)
T cd03269          93 YLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIR  172 (210)
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence            87666565545556678899999999988899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEec
Q psy7365         475 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  512 (601)
Q Consensus       475 ~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G  512 (601)
                      ++.++|+|||++||+++++..+|||+++|++|+++..|
T Consensus       173 ~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~  210 (210)
T cd03269         173 ELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG  210 (210)
T ss_pred             HHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence            98877899999999999999999999999999998654

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.97  E-value=8.9e-31  Score=267.47  Aligned_cols=197  Identities=21%  Similarity=0.273  Sum_probs=155.8

Q ss_pred             cccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEE-----------Ec
Q psy7365          53 ESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAK-----------IY  115 (601)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~-----------~~  115 (601)
                      .+|++.|++.   ..+++|+|+ +.+      +|||||  |||||      .++|+|+++|++|+|.           ++
T Consensus         4 ~~~~~~y~~~---~~~l~~i~~-i~~Ge~~~IvG~nGs--GKSTL------lk~l~Gl~~p~~G~I~~~~~~~~~~~~~~   71 (255)
T cd03236           4 DEPVHRYGPN---SFKLHRLPV-PREGQVLGLVGPNGI--GKSTA------LKILAGKLKPNLGKFDDPPDWDEILDEFR   71 (255)
T ss_pred             cCcceeecCc---chhhhcCCC-CCCCCEEEEECCCCC--CHHHH------HHHHhCCcCCCCceEeeccccchhhhhcc
Confidence            4688887532   258999995 655      999999  56665      5799999999999996           77


Q ss_pred             cccCCCchHHhc---ccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHH
Q psy7365         116 DHDIRTDMTTIR---RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQ  192 (601)
Q Consensus       116 g~~~~~~~~~~~---~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~  192 (601)
                      |.++.......+   ..++++||++.+++ .++.+++.+..     .......++.++++.+|+.+..++.+.+||||||
T Consensus        72 g~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~i~~~l-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~  145 (255)
T cd03236          72 GSELQNYFTKLLEGDVKVIVKPQYVDLIP-KAVKGKVGELL-----KKKDERGKLDELVDQLELRHVLDRNIDQLSGGEL  145 (255)
T ss_pred             CchhhhhhHHhhhcccceeeecchhccCc-hHHHHHHHHHh-----chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHH
Confidence            887743222222   24899999998887 48888887642     2233456788999999999989999999999999


Q ss_pred             hhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHh
Q psy7365         193 RKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFA  272 (601)
Q Consensus       193 qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  272 (601)
                      ||+++|+++                                      +.+                              
T Consensus       146 qrv~laral--------------------------------------~~~------------------------------  157 (255)
T cd03236         146 QRVAIAAAL--------------------------------------ARD------------------------------  157 (255)
T ss_pred             HHHHHHHHH--------------------------------------HhC------------------------------
Confidence            999854432                                      222                              


Q ss_pred             hccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccccc
Q psy7365         273 MSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  346 (601)
Q Consensus       273 ~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G  346 (601)
                           |+++||||||++||+.++..++++|+++.     .+|+|||++||+++++..+||++++|. |++...|
T Consensus       158 -----p~illlDEPts~LD~~~~~~l~~~l~~l~-----~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~  220 (255)
T cd03236         158 -----ADFYFFDEPSSYLDIKQRLNAARLIRELA-----EDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG  220 (255)
T ss_pred             -----CCEEEEECCCCCCCHHHHHHHHHHHHHHH-----hcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence                 58999999999999999999999999873     348999999999999999999999994 5665544

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.97  E-value=8.9e-31  Score=260.50  Aligned_cols=179  Identities=16%  Similarity=0.100  Sum_probs=144.6

Q ss_pred             eeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEE-EccccCCCchHHhcccEEEEccCCCCC
Q psy7365          68 GISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAK-IYDHDIRTDMTTIRRSLGVCPQYNALF  140 (601)
Q Consensus        68 ~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~-~~g~~~~~~~~~~~~~ig~v~Q~~~~~  140 (601)
                      +++|+||++.+      +|||||  |||||      .++|+|+++|++|+|. ++|..+            .+.|.+.+|
T Consensus         2 vl~~vs~~i~~Ge~~~l~G~NGs--GKSTL------lk~i~Gl~~~~sG~i~~~~~~~~------------~~~~~~~l~   61 (213)
T PRK15177          2 VLDKTDFVMGYHEHIGILAAPGS--GKTTL------TRLLCGLDAPDEGDFIGLRGDAL------------PLGANSFIL   61 (213)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCccCCCCCEEEecCcee------------ccccccccC
Confidence            68999999988      999999  56655      5799999999999997 776532            123567789


Q ss_pred             CCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhh
Q psy7365         141 DKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNV  220 (601)
Q Consensus       141 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~  220 (601)
                      +.+|+.||+.++...++.+..+..   ..+.+.++++...++++++||||||||+++|++                    
T Consensus        62 ~~ltv~enl~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~a--------------------  118 (213)
T PRK15177         62 PGLTGEENARMMASLYGLDGDEFS---HFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAIN--------------------  118 (213)
T ss_pred             CcCcHHHHHHHHHHHcCCCHHHHH---HHHHHHhChhHHhhchHhhcCHHHHHHHHHHHH--------------------
Confidence            999999999998777666544332   234466788888899999999999999975433                    


Q ss_pred             hHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHH
Q psy7365         221 ILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWE  300 (601)
Q Consensus       221 ~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~  300 (601)
                                        ++++                                   |+++||||||+++|+.++..+++
T Consensus       119 ------------------l~~~-----------------------------------p~llllDEP~~~lD~~~~~~~~~  145 (213)
T PRK15177        119 ------------------LLLP-----------------------------------CRLYIADGKLYTGDNATQLRMQA  145 (213)
T ss_pred             ------------------HhcC-----------------------------------CCEEEECCCCccCCHHHHHHHHH
Confidence                              2233                                   58999999999999999999999


Q ss_pred             HHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         301 LLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       301 ~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      .+.+..      +++|+|++||+++++..+||++++|.+|+++..+..
T Consensus       146 ~l~~~~------~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~  187 (213)
T PRK15177        146 ALACQL------QQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDL  187 (213)
T ss_pred             HHHHHh------hCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCH
Confidence            876531      246899999999999999999999999999877653

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.97  E-value=6.9e-31  Score=294.18  Aligned_cols=191  Identities=27%  Similarity=0.384  Sum_probs=153.3

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++||++.|+.  ...++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. +
T Consensus       321 i~~~~v~f~y~~--~~~~il~~i~l~i~~G~~~~ivG~sGs--GKSTL------~~ll~g~~~~~~G~I~~~g~~i~~~~  390 (529)
T TIGR02857       321 LEFSGLSVAYPG--RRAPALRPVSFTVPPGERVALVGPSGA--GKSTL------LNLLLGFVDPTEGSIAVNGVPLADAD  390 (529)
T ss_pred             EEEEEEEEECCC--CCcccccceeEEECCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCcEEEECCEehhhCC
Confidence            459999999743  335799999999998      999999  56665      579999999999999999999865 4


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCccccCChHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHK-----------RTSLANTLSGGM  191 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~  191 (601)
                      ...+|+.+|||||+|.+|+ .|++||+.++...  .+.    +++.++++..|+.+.           ......+|||||
T Consensus       391 ~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~~~--~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq  463 (529)
T TIGR02857       391 ADSWRDQIAWVPQHPFLFA-GTIAENIRLARPD--ASD----AEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQ  463 (529)
T ss_pred             HHHHHhheEEEcCCCcccC-cCHHHHHhccCCC--CCH----HHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHH
Confidence            5667889999999999985 5999999875321  222    345566666665432           334557899999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||+++||+++.+                                                                   
T Consensus       464 ~qri~laRal~~~-------------------------------------------------------------------  476 (529)
T TIGR02857       464 AQRLALARAFLRD-------------------------------------------------------------------  476 (529)
T ss_pred             HHHHHHHHHHhcC-------------------------------------------------------------------
Confidence            9999866554333                                                                   


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEe
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII  337 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL  337 (601)
                            |+++|||||||+||+.+.+.+.+.+.++      ..++|+|++||+++.. ..||++++|
T Consensus       477 ------~~ililDE~ts~lD~~~~~~i~~~l~~~------~~~~t~i~itH~~~~~-~~~d~i~~l  529 (529)
T TIGR02857       477 ------APLLLLDEPTAHLDAETEALVTEALRAL------AQGRTVLLVTHRLALA-ERADRIVVL  529 (529)
T ss_pred             ------CCEEEEeCcccccCHHHHHHHHHHHHHh------cCCCEEEEEecCHHHH-HhCCEEEeC
Confidence                  5899999999999999999999999886      2589999999999887 579999875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.97  E-value=1.7e-30  Score=258.83  Aligned_cols=192  Identities=22%  Similarity=0.331  Sum_probs=156.6

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcc----cccccccCCCCcccCCCCCHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAP----QKSYIGYCPQFDALNDRLTPR  390 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~----~~~~ig~v~Q~~~l~~~lTv~  390 (601)
                      +++++...-++.+++++...   +|++++++       +..|..++.+.+.....    .++.++|+||++.+++.+|++
T Consensus        17 ~~vs~~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~   93 (222)
T cd03224          17 FGVSLTVPEGEIVALLGRNG---AGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVE   93 (222)
T ss_pred             eeeeEEEcCCeEEEEECCCC---CCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHH
Confidence            88999889999999997522   45555433       22333333333332111    245699999999999999999


Q ss_pred             HHHHHhHHhcCCChhHHHHHHHHHHHHc-CCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHH
Q psy7365         391 EHLEFYSRVRNLPSVLLNTIVNESLNKF-ALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFL  469 (601)
Q Consensus       391 E~L~~~~~~~g~~~~~~~~~~~~lLe~~-~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i  469 (601)
                      ||+.+....++  .....+++.++++.+ ++.+..++++.+||||||||++||+||+.+|++|||||||+|||+.++..+
T Consensus        94 ~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l  171 (222)
T cd03224          94 ENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEI  171 (222)
T ss_pred             HHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHH
Confidence            99988655443  223345677888888 577888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHH
Q psy7365         470 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  518 (601)
Q Consensus       470 ~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~  518 (601)
                      +++|++++++|+|||++||+++++..+||++++|++|+++..|+++++.
T Consensus       172 ~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  220 (222)
T cd03224         172 FEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL  220 (222)
T ss_pred             HHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence            9999999777899999999999999999999999999999999988764

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.97  E-value=4.9e-31  Score=255.30  Aligned_cols=210  Identities=22%  Similarity=0.303  Sum_probs=168.6

Q ss_pred             hhcccccccccCC-CccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          51 LFESLSENRDKLG-IDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        51 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      .+.++.+.|.+.. ..+++++++||++..      +|-||+  |||||      .+.|+|-++|++|+|.|+|.+++. +
T Consensus         3 ~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGA--GKSTl------ln~iaG~l~~t~G~I~Idg~dVtk~~   74 (263)
T COG1101           3 SLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGA--GKSTL------LNAIAGDLKPTSGQILIDGVDVTKKS   74 (263)
T ss_pred             ccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCc--cHHHH------HHHhhCccccCCceEEECceecccCC
Confidence            3667888886544 468899999999977      999999  57665      579999999999999999999976 4


Q ss_pred             hHHhcccEEEEccCC--CCCCCCCHHHHHHHhHhh---cCCChH---HHHHHHHHHHHHc--CCCcccCCccccCChHHH
Q psy7365         123 MTTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQL---KQVPKD---LAQLEISNMIGDL--GIPHKRTSLANTLSGGMQ  192 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~~~~---~~~~~~---~~~~~~~~~l~~~--gl~~~~~~~~~~LSgG~~  192 (601)
                      .+.....++.|||+|  ..++.+|++||++.....   +|+...   ..+....+.++.+  |++...+.++.-||||||
T Consensus        75 ~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQR  154 (263)
T COG1101          75 VAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQR  154 (263)
T ss_pred             HHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHH
Confidence            455566899999999  489999999999886543   333331   2222334556655  567889999999999999


Q ss_pred             hhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHh
Q psy7365         193 RKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFA  272 (601)
Q Consensus       193 qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  272 (601)
                      |.++++.                                      +.                                 
T Consensus       155 QalsL~M--------------------------------------At---------------------------------  163 (263)
T COG1101         155 QALSLLM--------------------------------------AT---------------------------------  163 (263)
T ss_pred             HHHHHHH--------------------------------------Hh---------------------------------
Confidence            9976321                                      11                                 


Q ss_pred             hccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc
Q psy7365         273 MSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  345 (601)
Q Consensus       273 ~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~  345 (601)
                        +.+|++|+|||.|++|||.+...+.++-.++..    +...|.+++||+|+.+.++++|.++|++|+|+.+
T Consensus       164 --l~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~----~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD  230 (263)
T COG1101         164 --LHPPKILLLDEHTAALDPKTAEFVMELTAKIVE----EHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD  230 (263)
T ss_pred             --cCCCcEEEecchhhcCCcchHHHHHHHHHHHHH----hcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence              124799999999999999999999999888853    4578999999999999999999999999998764

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=5.6e-31  Score=265.11  Aligned_cols=180  Identities=21%  Similarity=0.301  Sum_probs=152.1

Q ss_pred             hhhhcccccccccCCC-----ccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccc
Q psy7365          49 VSLFESLSENRDKLGI-----DSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDH  117 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~  117 (601)
                      +..++||+|.|....+     ...|++||||++.+      +|.|||  ||||+     + |+|.|+++|++|+|.++|+
T Consensus         4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~--GKSTl-----g-r~i~~L~~pt~G~i~f~g~   75 (268)
T COG4608           4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGC--GKSTL-----G-RLILGLEEPTSGEILFEGK   75 (268)
T ss_pred             eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCC--CHHHH-----H-HHHHcCcCCCCceEEEcCc
Confidence            4558899999865332     35899999999988      999999  56655     4 5999999999999999999


Q ss_pred             cCCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCc-ccCCccccCChHHHhhhh
Q psy7365         118 DIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPH-KRTSLANTLSGGMQRKLD  196 (601)
Q Consensus       118 ~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qr~~  196 (601)
                      ++....                                    +++..+++.++|+.+|+.. ..++++++|||||+||++
T Consensus        76 ~i~~~~------------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~  119 (268)
T COG4608          76 DITKLS------------------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIG  119 (268)
T ss_pred             chhhcc------------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHH
Confidence            864321                                    4556678999999999985 789999999999999998


Q ss_pred             chhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccC
Q psy7365         197 NVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFV  276 (601)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  276 (601)
                      |||||.                                      -                                   
T Consensus       120 IARALa--------------------------------------l-----------------------------------  126 (268)
T COG4608         120 IARALA--------------------------------------L-----------------------------------  126 (268)
T ss_pred             HHHHHh--------------------------------------h-----------------------------------
Confidence            654322                                      2                                   


Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                      .|+++|+|||+|+||...+.++.++|.+++    +..|.|.+++|||++.+..+|||+++|..|+++..+...
T Consensus       127 ~P~liV~DEpvSaLDvSiqaqIlnLL~dlq----~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~  195 (268)
T COG4608         127 NPKLIVADEPVSALDVSVQAQILNLLKDLQ----EELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTE  195 (268)
T ss_pred             CCcEEEecCchhhcchhHHHHHHHHHHHHH----HHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHH
Confidence            269999999999999999999999999995    346999999999999999999999999999999888653

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=6.6e-31  Score=247.81  Aligned_cols=195  Identities=21%  Similarity=0.262  Sum_probs=161.9

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------ccccccccccccc--------C--------CcccccccccCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDM--------K--------SAPQKSYIGYCP  378 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~--------~--------~~~~~~~ig~v~  378 (601)
                      .-++....-+|.|.+|+...   +|++++++       +..+...+.+..+        .        -...|.++|+||
T Consensus        23 KGvSL~A~~GdVisIIGsSG---SGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVF   99 (256)
T COG4598          23 KGVSLQANAGDVISIIGSSG---SGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVF   99 (256)
T ss_pred             cceeeecCCCCEEEEecCCC---CchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhh
Confidence            34556667899999997522   45555443       1222221111110        0        012356799999


Q ss_pred             CCcccCCCCCHHHHHHH-hHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECC
Q psy7365         379 QFDALNDRLTPREHLEF-YSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEP  457 (601)
Q Consensus       379 Q~~~l~~~lTv~E~L~~-~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEP  457 (601)
                      |+.++|.+|||.||+.- .....|.++.++.++++.+|.++|+.+..+.+|..||||||||++|||||+.+|+++++|||
T Consensus       100 Q~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEP  179 (256)
T COG4598         100 QHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEP  179 (256)
T ss_pred             hhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCC
Confidence            99999999999999754 34556888889999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         458 TSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       458 TsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ||.|||+-.-++.+.+++|+++|+|.+++||.|.++..++.+|+++++|.|-..|+|+++..
T Consensus       180 TSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~  241 (256)
T COG4598         180 TSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFG  241 (256)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999864

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.97  E-value=9.3e-31  Score=270.98  Aligned_cols=204  Identities=20%  Similarity=0.293  Sum_probs=151.9

Q ss_pred             CCeeeeecCCC---CCCccchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhc
Q psy7365          31 GSEVTYVLPQD---PASMGAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSML  101 (601)
Q Consensus        31 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l  101 (601)
                      |.-+.|+.+.+   +.+++...+.++++++.      +.++++|+||++.+      +||||+  |||||      .++|
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~l~i~nls~~------~~~vL~~vs~~i~~Ge~~~liG~NGs--GKSTL------l~~I   83 (282)
T cd03291          18 GELLEKAKQENNDRKHSSDDNNLFFSNLCLV------GAPVLKNINLKIEKGEMLAITGSTGS--GKTSL------LMLI   83 (282)
T ss_pred             HHHHhcccccccccccCCCCCeEEEEEEEEe------cccceeeeeEEEcCCCEEEEECCCCC--CHHHH------HHHH
Confidence            33344444443   24555666679999984      24599999999988      999999  56655      5799


Q ss_pred             cCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCc---
Q psy7365         102 MGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPH---  178 (601)
Q Consensus       102 ~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---  178 (601)
                      +|+++|++|+|.++|            .++|+||++.+|+. ||.||+.++...   ..    .++.++++.+++.+   
T Consensus        84 ~Gl~~p~~G~I~i~g------------~i~yv~q~~~l~~~-tv~enl~~~~~~---~~----~~~~~~l~~~~l~~~l~  143 (282)
T cd03291          84 LGELEPSEGKIKHSG------------RISFSSQFSWIMPG-TIKENIIFGVSY---DE----YRYKSVVKACQLEEDIT  143 (282)
T ss_pred             hCCCCCCCcEEEECC------------EEEEEeCccccccc-CHHHHhhccccc---CH----HHHHHHHHHhCCHHHHH
Confidence            999999999999987            38999999988875 999999875321   11    11223333344322   


Q ss_pred             --------ccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHH
Q psy7365         179 --------KRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQ  250 (601)
Q Consensus       179 --------~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~  250 (601)
                              ..++.+.+||||||||+++||+|+                                      .         
T Consensus       144 ~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~--------------------------------------~---------  176 (282)
T cd03291         144 KFPEKDNTVLGEGGITLSGGQRARISLARAVY--------------------------------------K---------  176 (282)
T ss_pred             hccccccceecCCCCcCCHHHHHHHHHHHHHh--------------------------------------c---------
Confidence                    234457899999999997544322                                      2         


Q ss_pred             HHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHH-HHHhhhccccCCcEEEEEecchhHHHh
Q psy7365         251 MALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELL-IKVYYASHSLSGRTVILTTHYMDEADL  329 (601)
Q Consensus       251 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l-~~l~~~~~~~~G~TVI~~tHdl~~~~~  329 (601)
                                                +|+++||||||+|||+.++..+.+.+ .++     + ++.|||++||+++++ .
T Consensus       177 --------------------------~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~-----~-~~~tIiiisH~~~~~-~  223 (282)
T cd03291         177 --------------------------DADLYLLDSPFGYLDVFTEKEIFESCVCKL-----M-ANKTRILVTSKMEHL-K  223 (282)
T ss_pred             --------------------------CCCEEEEECCCccCCHHHHHHHHHHHHHHh-----h-CCCEEEEEeCChHHH-H
Confidence                                      25899999999999999999998865 444     1 378999999999997 4


Q ss_pred             cCCEEEEecCCccccccCc
Q psy7365         330 LGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       330 l~Drv~vL~~GkIv~~G~~  348 (601)
                      .||++++|.+|+++..+..
T Consensus       224 ~~d~i~~l~~G~i~~~g~~  242 (282)
T cd03291         224 KADKILILHEGSSYFYGTF  242 (282)
T ss_pred             hCCEEEEEECCEEEEECCH
Confidence            7999999999998876643

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.97  E-value=1.2e-30  Score=295.08  Aligned_cols=203  Identities=25%  Similarity=0.375  Sum_probs=160.7

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++|+++.|.. ....++++|+||++.+      .||||+  |||||      .++|+|+++|++|+|+++|.++.. +
T Consensus       338 i~~~~v~f~y~~-~~~~~iL~~inl~i~~Ge~i~IvG~sGs--GKSTL------lklL~gl~~p~~G~I~i~g~~i~~~~  408 (576)
T TIGR02204       338 IEFEQVNFAYPA-RPDQPALDGLNLTVRPGETVALVGPSGA--GKSTL------FQLLLRFYDPQSGRILLDGVDLRQLD  408 (576)
T ss_pred             EEEEEEEEECCC-CCCCccccceeEEecCCCEEEEECCCCC--CHHHH------HHHHHhccCCCCCEEEECCEEHHhcC
Confidence            459999999753 1125799999999988      999999  56665      579999999999999999999864 4


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC-----------cccCCccccCChHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP-----------HKRTSLANTLSGGM  191 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgG~  191 (601)
                      ....++.+||+||+|.+| +.|++||+.++...  .+.    +++.++++.+|+.           .........|||||
T Consensus       409 ~~~~~~~i~~~~Q~~~lf-~~Ti~~Ni~~~~~~--~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq  481 (576)
T TIGR02204       409 PAELRARMALVPQDPVLF-AASVMENIRYGRPD--ATD----EEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQ  481 (576)
T ss_pred             HHHHHHhceEEccCCccc-cccHHHHHhcCCCC--CCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHH
Confidence            556788899999999988 56999999875321  222    2344455555543           33334556799999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||+++||+|+.+                                                                   
T Consensus       482 ~Qrl~laRal~~~-------------------------------------------------------------------  494 (576)
T TIGR02204       482 RQRIAIARAILKD-------------------------------------------------------------------  494 (576)
T ss_pred             HHHHHHHHHHHhC-------------------------------------------------------------------
Confidence            9999876654433                                                                   


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                            |+++|||||||+||+.+.+.+++.|+++      ..++|+|++||+.+.. ..||+++++++|+++..|+.
T Consensus       495 ------~~ililDEpts~lD~~~~~~i~~~l~~~------~~~~t~IiitH~~~~~-~~~d~vi~l~~g~~~~~g~~  558 (576)
T TIGR02204       495 ------APILLLDEATSALDAESEQLVQQALETL------MKGRTTLIIAHRLATV-LKADRIVVMDQGRIVAQGTH  558 (576)
T ss_pred             ------CCeEEEeCcccccCHHHHHHHHHHHHHH------hCCCEEEEEecchHHH-HhCCEEEEEECCEEEeeecH
Confidence                  4899999999999999999999999886      2479999999999776 57999999999999887754

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.97  E-value=1.4e-30  Score=297.79  Aligned_cols=195  Identities=25%  Similarity=0.281  Sum_probs=159.4

Q ss_pred             cchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccC
Q psy7365          46 GAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI  119 (601)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~  119 (601)
                      +..+..++||++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.+ |.++
T Consensus       316 ~~~~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~l~G~NGs--GKSTL------lk~l~G~~~p~~G~i~~-~~~~  382 (635)
T PRK11147        316 GKIVFEMENVNYQIDG----KQLVKDFSAQVQRGDKIALIGPNGC--GKTTL------LKLMLGQLQADSGRIHC-GTKL  382 (635)
T ss_pred             CCceEEEeeeEEEECC----eEEEcCcEEEEcCCCEEEEECCCCC--cHHHH------HHHHhCCCCCCCcEEEE-CCCc
Confidence            5566779999999864    3599999999988      999999  56665      67999999999999998 5432


Q ss_pred             CCchHHhcccEEEEccCC-CCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC-cccCCccccCChHHHhhhhc
Q psy7365         120 RTDMTTIRRSLGVCPQYN-ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP-HKRTSLANTLSGGMQRKLDN  197 (601)
Q Consensus       120 ~~~~~~~~~~ig~v~Q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qr~~~  197 (601)
                               .+||++|++ .+++.+||.||+.++.......  ....++.++++.|++. +..++++++|||||||||++
T Consensus       383 ---------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~l  451 (635)
T PRK11147        383 ---------EVAYFDQHRAELDPEKTVMDNLAEGKQEVMVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLL  451 (635)
T ss_pred             ---------EEEEEeCcccccCCCCCHHHHHHhhccccccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHH
Confidence                     599999986 5889999999998754221111  1234678899999996 56899999999999999975


Q ss_pred             hhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCC
Q psy7365         198 VKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVP  277 (601)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  277 (601)
                      ||++                                      +.                                   +
T Consensus       452 a~al--------------------------------------~~-----------------------------------~  458 (635)
T PRK11147        452 ARLF--------------------------------------LK-----------------------------------P  458 (635)
T ss_pred             HHHH--------------------------------------hc-----------------------------------C
Confidence            4432                                      22                                   2


Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEec-CCccccc
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA-AGKLQCC  345 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~-~GkIv~~  345 (601)
                      |++|||||||+|||+.++..+.+.|+++        +.|||++|||.+++..+||+++++. +|++...
T Consensus       459 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--------~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~  519 (635)
T PRK11147        459 SNLLILDEPTNDLDVETLELLEELLDSY--------QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRY  519 (635)
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHHHHhC--------CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEc
Confidence            5899999999999999999999999763        3499999999999999999999997 7987654

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2e-30  Score=269.15  Aligned_cols=195  Identities=19%  Similarity=0.244  Sum_probs=159.8

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-------cccccccccCCCCcc-cCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-------APQKSYIGYCPQFDA-LNDR  386 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-------~~~~~~ig~v~Q~~~-l~~~  386 (601)
                      +++++...-++.+++++...   .|++++++       +..|..++.+.++..       ...++.+||+||++. .+..
T Consensus        24 ~~vsl~i~~Ge~~~iiG~NG---aGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~  100 (287)
T PRK13641         24 DNISFELEEGSFVALVGHTG---SGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFE  100 (287)
T ss_pred             eeeEEEEeCCCEEEEECCCC---CCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhcc
Confidence            88888889999999997522   45555433       333444444444321       123457999999973 2335


Q ss_pred             CCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCC-cccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHH
Q psy7365         387 LTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGA  465 (601)
Q Consensus       387 lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~-~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~  465 (601)
                      +|+.||+.+....++...++..+++.++++.++|. +..++++.+||||||||++||+||+.+|++|||||||+|||+.+
T Consensus       101 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~  180 (287)
T PRK13641        101 NTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEG  180 (287)
T ss_pred             chHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence            89999998765545555555666789999999997 68899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         466 RRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       466 ~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ++.++++|++++++|.|||++|||++++..+|||+++|++|+++..|+++++..
T Consensus       181 ~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  234 (287)
T PRK13641        181 RKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS  234 (287)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            999999999997779999999999999999999999999999999999998754

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.9e-30  Score=269.23  Aligned_cols=194  Identities=22%  Similarity=0.319  Sum_probs=160.5

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-------cccccccccCCCCc--ccCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-------APQKSYIGYCPQFD--ALND  385 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-------~~~~~~ig~v~Q~~--~l~~  385 (601)
                      |++++-..-++.+++++...   +|++++++       +..|+.++.+.++..       ...+++|||+||++  .+++
T Consensus        24 ~~vsl~i~~Ge~~~i~G~nG---sGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~  100 (286)
T PRK13646         24 HDVNTEFEQGKYYAIVGQTG---SGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE  100 (286)
T ss_pred             eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch
Confidence            88999999999999997532   45555432       333444444444321       12356899999986  3444


Q ss_pred             CCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCC-cccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHH
Q psy7365         386 RLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG  464 (601)
Q Consensus       386 ~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~-~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~  464 (601)
                       .|+.||+.|.....+.+..+..+++.++++.+||. +..++++.+||||||||++||+||+.+|++|||||||+|||+.
T Consensus       101 -~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~  179 (286)
T PRK13646        101 -DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQ  179 (286)
T ss_pred             -hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence             59999998866555666666667889999999997 6788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh-CCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         465 ARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       465 ~~~~i~~lL~~l~~-~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ++..++++|+++++ .|+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus       180 ~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  235 (286)
T PRK13646        180 SKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK  235 (286)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            99999999999976 49999999999999999999999999999999999998754

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.97  E-value=1.4e-30  Score=258.90  Aligned_cols=183  Identities=21%  Similarity=0.296  Sum_probs=150.4

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcc-------cccccccCCCCcccCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAP-------QKSYIGYCPQFDALNDRL  387 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~-------~~~~ig~v~Q~~~l~~~l  387 (601)
                      +++++...-++.+++++...   .|++++++       +..|+.++.+.+.....       .++.++|+||++.+++.+
T Consensus        21 ~~~s~~i~~G~~~~l~G~nG---sGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   97 (218)
T cd03255          21 KGVSLSIEKGEFVAIVGPSG---SGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDL   97 (218)
T ss_pred             eeeEEEEcCCCEEEEEcCCC---CCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCC
Confidence            89999999999999998522   45555433       23343333343332211       235799999999999999


Q ss_pred             CHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHH
Q psy7365         388 TPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARR  467 (601)
Q Consensus       388 Tv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~  467 (601)
                      |++||+.+....++.......+++.++++.++|.+..++++.+||||||||++||+||+.+|++|||||||+|||+.+++
T Consensus        98 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~  177 (218)
T cd03255          98 TALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGK  177 (218)
T ss_pred             cHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHH
Confidence            99999998765555444444567889999999998889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh-CCcEEEEEccChhHHHhhCCEEEEEeCCEE
Q psy7365         468 FLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQF  508 (601)
Q Consensus       468 ~i~~lL~~l~~-~G~tVllsTHdl~e~~~l~drv~iL~~G~i  508 (601)
                      .++++|+++++ +|+|||++||++++++ +||++++|++|++
T Consensus       178 ~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i  218 (218)
T cd03255         178 EVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI  218 (218)
T ss_pred             HHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence            99999999977 5899999999999998 9999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.8e-30  Score=260.89  Aligned_cols=200  Identities=26%  Similarity=0.387  Sum_probs=162.4

Q ss_pred             CCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc----ccccccccCCCCc
Q psy7365         313 SGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA----PQKSYIGYCPQFD  381 (601)
Q Consensus       313 ~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~----~~~~~ig~v~Q~~  381 (601)
                      .++.++   +++++...-++.+++++...   .|++++++       +..|+.++.+.+....    ..++.++|+||++
T Consensus        14 ~~~~~l---~~~sl~i~~Ge~~~l~G~nG---sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~   87 (241)
T PRK10895         14 KGRRVV---EDVSLTVNSGEIVGLLGPNG---AGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEA   87 (241)
T ss_pred             CCEEEE---eeeeEEEcCCcEEEEECCCC---CCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCC
Confidence            344444   89999999999999997522   45555433       2333333333333211    1246799999999


Q ss_pred             ccCCCCCHHHHHHHhHHhc-CCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCC
Q psy7365         382 ALNDRLTPREHLEFYSRVR-NLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG  460 (601)
Q Consensus       382 ~l~~~lTv~E~L~~~~~~~-g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsG  460 (601)
                      .+++.+|+.||+.+..... +....+.+.++.++++.+++.+..++++.+||||||||++||+||+.+|++|||||||+|
T Consensus        88 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~  167 (241)
T PRK10895         88 SIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAG  167 (241)
T ss_pred             cccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence            9999999999998764433 233334456788999999999888999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHH
Q psy7365         461 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  518 (601)
Q Consensus       461 LD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~  518 (601)
                      ||+.+++.+++++++++++|+|||++||+++++..+||++++|++|++++.|+++++.
T Consensus       168 LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  225 (241)
T PRK10895        168 VDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL  225 (241)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence            9999999999999998877999999999999999999999999999999999998874

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.97  E-value=3.3e-30  Score=265.06  Aligned_cols=195  Identities=22%  Similarity=0.272  Sum_probs=159.1

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc------ccccccccCCCCcccCCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA------PQKSYIGYCPQFDALNDRLT  388 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~------~~~~~ig~v~Q~~~l~~~lT  388 (601)
                      +++++...-++.+++++...   .|++++++       +..|..++.+.+....      ..++.++|+||++.+++.+|
T Consensus        24 ~~vsl~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t  100 (269)
T PRK11831         24 DNISLTVPRGKITAIMGPSG---IGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMN  100 (269)
T ss_pred             eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCC
Confidence            88899999999999997522   45555433       2233333333332211      12457999999999999999


Q ss_pred             HHHHHHHhHHhc-CCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHH
Q psy7365         389 PREHLEFYSRVR-NLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARR  467 (601)
Q Consensus       389 v~E~L~~~~~~~-g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~  467 (601)
                      +.||+.+....+ +.+......++.++++.+++.+..++++.+||||||||++||+||+.+|++|||||||+|||+.+++
T Consensus       101 v~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~  180 (269)
T PRK11831        101 VFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMG  180 (269)
T ss_pred             HHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence            999998754332 2333344556788999999998899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         468 FLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       468 ~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      .++++|++++++ |+|||++|||++++..+|||+++|++|+++..|+++++.+
T Consensus       181 ~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  233 (269)
T PRK11831        181 VLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA  233 (269)
T ss_pred             HHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence            999999998765 8999999999999999999999999999999999988754

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.97  E-value=1.2e-30  Score=246.74  Aligned_cols=192  Identities=21%  Similarity=0.313  Sum_probs=159.3

Q ss_pred             hHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCC-cccccccccCCCCcccCCCCCHHHHHHHh
Q psy7365         325 DEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKS-APQKSYIGYCPQFDALNDRLTPREHLEFY  396 (601)
Q Consensus       325 ~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~-~~~~~~ig~v~Q~~~l~~~lTv~E~L~~~  396 (601)
                      +....-++++++++...   .|+++++       .+..+..++.+.|... .+..+-++++||++++|.++||.+|+.+.
T Consensus        19 dl~v~~ge~vAi~GpSG---aGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLG   95 (231)
T COG3840          19 DLTVPAGEIVAILGPSG---AGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLG   95 (231)
T ss_pred             EEeecCCcEEEEECCCC---ccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhccc
Confidence            44556788999997532   4555443       3444555556666543 34566799999999999999999999875


Q ss_pred             HHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q psy7365         397 SRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERA  476 (601)
Q Consensus       397 ~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l  476 (601)
                      ..-.-.-..+.+++++.++.++||..+.+|.|.+|||||||||++||+|+.+-+|++||||+|.|||.-|.++..++.++
T Consensus        96 l~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l  175 (231)
T COG3840          96 LSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQL  175 (231)
T ss_pred             CCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHH
Confidence            43111112445678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         477 VSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       477 ~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      .++ +.|++|+||..+++.+++||++++++|+|.+.|+.+++..
T Consensus       176 ~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~  219 (231)
T COG3840         176 CDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS  219 (231)
T ss_pred             HHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence            754 9999999999999999999999999999999999988764

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.97  E-value=1.7e-30  Score=260.11  Aligned_cols=196  Identities=21%  Similarity=0.296  Sum_probs=155.9

Q ss_pred             CCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc------------ccccccccccccccCC-----cccccccc
Q psy7365         313 SGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL------------KNSFARGYYLSLDMKS-----APQKSYIG  375 (601)
Q Consensus       313 ~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL------------k~~~g~g~~igld~~~-----~~~~~~ig  375 (601)
                      .+++++   +++++...-++.+++++...   +|+++++            .+..|+.++.+.+...     ...++.+|
T Consensus        11 ~~~~~l---~~vsl~i~~Ge~~~i~G~nG---sGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   84 (227)
T cd03260          11 GDKHAL---KDISLDIPKGEITALIGPSG---CGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVG   84 (227)
T ss_pred             CCceee---eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEE
Confidence            344554   89999999999999997522   4444432            2222333333333221     12356799


Q ss_pred             cCCCCcccCCCCCHHHHHHHhHHhcCCCh-hHHHHHHHHHHHHcCCCcccccc--cCcCChHHHHHHHHHHHHhCCCCEE
Q psy7365         376 YCPQFDALNDRLTPREHLEFYSRVRNLPS-VLLNTIVNESLNKFALGHYSDRE--VRTLSGGNKRKLSTAIALLGNTPLI  452 (601)
Q Consensus       376 ~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~-~~~~~~~~~lLe~~~L~~~~~~~--~~~LSgGqkQRl~lA~AL~~~P~lL  452 (601)
                      |+||++.++ .+|++||+.+....++... ....+++.++++.+++.+..+++  +.+||||||||++||+||+.+|++|
T Consensus        85 ~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll  163 (227)
T cd03260          85 MVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVL  163 (227)
T ss_pred             EEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            999999888 7999999988655544332 22456788999999998776776  5999999999999999999999999


Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHH
Q psy7365         453 FLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATH  516 (601)
Q Consensus       453 lLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~  516 (601)
                      ||||||+|||+.+++.++++|++++++ +|||++|||++++..+|||+++|++|++++.|++++
T Consensus       164 llDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  226 (227)
T cd03260         164 LLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ  226 (227)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence            999999999999999999999999877 999999999999999999999999999999998765

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.97  E-value=4.8e-30  Score=258.58  Aligned_cols=201  Identities=24%  Similarity=0.390  Sum_probs=163.1

Q ss_pred             CcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc--ccccccccCCCCcccC
Q psy7365         314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA--PQKSYIGYCPQFDALN  384 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~--~~~~~ig~v~Q~~~l~  384 (601)
                      +++++   +++++...-++.+++++...   .|++++++       +..|..++.+.+....  ..++.++|+||++.++
T Consensus        13 ~~~~l---~~vs~~i~~Ge~~~i~G~nG---sGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~   86 (236)
T TIGR03864        13 ARRAL---DDVSFTVRPGEFVALLGPNG---AGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLD   86 (236)
T ss_pred             CEEEE---eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCc
Confidence            44544   88999999999999997522   45554432       2333333333332211  1235799999999888


Q ss_pred             CCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHH
Q psy7365         385 DRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG  464 (601)
Q Consensus       385 ~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~  464 (601)
                      +.+|++||+.+....++.+.....+.+.++++.++|.+..++++.+||||||||++||+||+.+|+++||||||+|||+.
T Consensus        87 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~  166 (236)
T TIGR03864        87 LDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPA  166 (236)
T ss_pred             ccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHH
Confidence            89999999988765555444445567889999999998889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh-CCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHh
Q psy7365         465 ARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKY  521 (601)
Q Consensus       465 ~~~~i~~lL~~l~~-~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~  521 (601)
                      +++.+++.|+++++ +|+|||++||+++++.. |||+++|++|+++..|+++++.+.+
T Consensus       167 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~  223 (236)
T TIGR03864       167 SRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAELRGAL  223 (236)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHHHHHc
Confidence            99999999999875 58999999999999975 9999999999999999999887654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.97  E-value=2.1e-30  Score=256.07  Aligned_cols=190  Identities=24%  Similarity=0.361  Sum_probs=154.6

Q ss_pred             CCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-cccccccccCCCCcccC
Q psy7365         313 SGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-APQKSYIGYCPQFDALN  384 (601)
Q Consensus       313 ~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-~~~~~~ig~v~Q~~~l~  384 (601)
                      .++.++   +++++...-++.+++++...   .|++++++       +..|+..+.+.+... ...++.++|+||++.++
T Consensus        11 ~~~~~l---~~~~~~i~~G~~~~i~G~nG---sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~   84 (208)
T cd03268          11 GKKRVL---DDISLHVKKGEIYGFLGPNG---AGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFY   84 (208)
T ss_pred             CCeEeE---eeeEEEEcCCcEEEEECCCC---CCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccC
Confidence            344554   88898888999999997522   45554432       223333333333221 12356799999999999


Q ss_pred             CCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHH
Q psy7365         385 DRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG  464 (601)
Q Consensus       385 ~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~  464 (601)
                      +.+|+.||+.++...++..    .++++++++.+++.+..++++.+||||||||++||+|++.+|+++||||||+|||+.
T Consensus        85 ~~~tv~e~l~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~  160 (208)
T cd03268          85 PNLTARENLRLLARLLGIR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPD  160 (208)
T ss_pred             ccCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHH
Confidence            9999999998876544431    346788999999998899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEec
Q psy7365         465 ARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  512 (601)
Q Consensus       465 ~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G  512 (601)
                      +++.++++|++++++|+|||++|||++++..+||++++|++|++++.|
T Consensus       161 ~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g  208 (208)
T cd03268         161 GIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG  208 (208)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence            999999999998878999999999999999999999999999998764

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.97  E-value=3.8e-30  Score=262.63  Aligned_cols=201  Identities=20%  Similarity=0.249  Sum_probs=161.2

Q ss_pred             CCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC----------------cc
Q psy7365         313 SGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS----------------AP  369 (601)
Q Consensus       313 ~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~----------------~~  369 (601)
                      .+++++   +++++...-++.+++++...   .|++++++       +..|..++.+.+...                ..
T Consensus        16 ~~~~~l---~~is~~i~~Ge~~~l~G~nG---sGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~   89 (257)
T PRK10619         16 GEHEVL---KGVSLQANAGDVISIIGSSG---SGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRL   89 (257)
T ss_pred             CCEEEE---eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHH
Confidence            345554   88899999999999997422   44444332       222333333322210                12


Q ss_pred             cccccccCCCCcccCCCCCHHHHHHHhH-HhcCCChhHHHHHHHHHHHHcCCCcc-cccccCcCChHHHHHHHHHHHHhC
Q psy7365         370 QKSYIGYCPQFDALNDRLTPREHLEFYS-RVRNLPSVLLNTIVNESLNKFALGHY-SDREVRTLSGGNKRKLSTAIALLG  447 (601)
Q Consensus       370 ~~~~ig~v~Q~~~l~~~lTv~E~L~~~~-~~~g~~~~~~~~~~~~lLe~~~L~~~-~~~~~~~LSgGqkQRl~lA~AL~~  447 (601)
                      .+++++|+||++.+++.+|++||+.+.. .+++......++++.++++.+++.+. .++++.+||||||||++||+||+.
T Consensus        90 ~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~  169 (257)
T PRK10619         90 LRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAM  169 (257)
T ss_pred             HhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhc
Confidence            2467999999999999999999998643 23344444556678899999999876 488999999999999999999999


Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         448 NTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       448 ~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      +|+++||||||+|||+.+++.++++|++++++|+|||++|||++++..+|||+++|++|+++..|+++++.+
T Consensus       170 ~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  241 (257)
T PRK10619        170 EPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFG  241 (257)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhhh
Confidence            999999999999999999999999999998779999999999999999999999999999999999988753

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.9e-30  Score=267.49  Aligned_cols=200  Identities=20%  Similarity=0.295  Sum_probs=163.4

Q ss_pred             CcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCC-----cccccccccCCCCc
Q psy7365         314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKS-----APQKSYIGYCPQFD  381 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~-----~~~~~~ig~v~Q~~  381 (601)
                      ++.++   +++++...-++.+++++...   .|+++++       ++..|+.++.+.+...     ...++.+||+||++
T Consensus        18 ~~~~l---~~vs~~i~~Ge~~~i~G~nG---aGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~   91 (283)
T PRK13636         18 GTHAL---KGININIKKGEVTAILGGNG---AGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDP   91 (283)
T ss_pred             CCeee---eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCc
Confidence            35555   89999999999999997522   4444433       2333444444444321     12356799999997


Q ss_pred             c-cCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCC
Q psy7365         382 A-LNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG  460 (601)
Q Consensus       382 ~-l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsG  460 (601)
                      . .+...|++||+.+.....+.+..+..++++++++.++|.+..++++.+||||||||++||+||+.+|++|||||||+|
T Consensus        92 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~g  171 (283)
T PRK13636         92 DNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAG  171 (283)
T ss_pred             chhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence            4 344579999998865545555555567789999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         461 MDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       461 LD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ||+.++..++++|+++.++ |+|||++||+++++..+|||+++|++|++++.|+++++..
T Consensus       172 LD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  231 (283)
T PRK13636        172 LDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA  231 (283)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            9999999999999999765 8999999999999999999999999999999999998754

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.97  E-value=2.7e-30  Score=261.11  Aligned_cols=193  Identities=22%  Similarity=0.275  Sum_probs=156.1

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc------ccccccccCCCCcccCCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA------PQKSYIGYCPQFDALNDRLT  388 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~------~~~~~ig~v~Q~~~l~~~lT  388 (601)
                      +++++...-++.+++++...   +|++++++       +..|...+.+.+....      ..++.+||+||++.+++.+|
T Consensus        19 ~~vs~~i~~Ge~~~l~G~nG---sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   95 (243)
T TIGR02315        19 KNINLNINPGEFVAIIGPSG---AGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLT   95 (243)
T ss_pred             ecceEEEcCCCEEEEECCCC---CCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccccc
Confidence            88999999999999998522   45555432       2333333333332211      13567999999999999999


Q ss_pred             HHHHHHHhHH--------hcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCC
Q psy7365         389 PREHLEFYSR--------VRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG  460 (601)
Q Consensus       389 v~E~L~~~~~--------~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsG  460 (601)
                      +.||+.+...        +.+.......+++.++++.+++.+..++++.+||||||||++||+||+.+|++|||||||+|
T Consensus        96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~  175 (243)
T TIGR02315        96 VLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIAS  175 (243)
T ss_pred             HHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            9999976321        11112233456788999999999888999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHH
Q psy7365         461 MDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  517 (601)
Q Consensus       461 LD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L  517 (601)
                      ||+.+++.++++|+++.++ |+|||++||+++++..+||++++|++|+++..|+++++
T Consensus       176 LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  233 (243)
T TIGR02315       176 LDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL  233 (243)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence            9999999999999998764 89999999999999999999999999999999999876

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.97  E-value=3e-30  Score=255.85  Aligned_cols=183  Identities=22%  Similarity=0.310  Sum_probs=151.0

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc------ccccccccCCCCcccCCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA------PQKSYIGYCPQFDALNDRLT  388 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~------~~~~~ig~v~Q~~~l~~~lT  388 (601)
                      +++++...-++.+++++...   .|++++++       +..|+.++.+.++...      ..++.++|+||++.+++.+|
T Consensus        19 ~~is~~i~~G~~~~l~G~nG---sGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   95 (214)
T TIGR02673        19 HDVSLHIRKGEFLFLTGPSG---AGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRT   95 (214)
T ss_pred             cceeEEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCc
Confidence            88999999999999997522   45554432       2333333334333211      13467999999999999999


Q ss_pred             HHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHH
Q psy7365         389 PREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRF  468 (601)
Q Consensus       389 v~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~  468 (601)
                      +.||+.+....++.......+++.++++.+++.+..++++.+||||||||++||+||+.+|+++||||||+|||+.++..
T Consensus        96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~  175 (214)
T TIGR02673        96 VYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSER  175 (214)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHH
Confidence            99999887655554444455678899999999988899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCE
Q psy7365         469 LWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ  507 (601)
Q Consensus       469 i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~  507 (601)
                      ++++|++++++|+|||++||+++++..+|||+++|++|+
T Consensus       176 l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       176 ILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR  214 (214)
T ss_pred             HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence            999999987779999999999999999999999999985

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.9e-30  Score=267.00  Aligned_cols=194  Identities=24%  Similarity=0.273  Sum_probs=161.1

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC---cccccccccCCCCcc-cCCCCCHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS---APQKSYIGYCPQFDA-LNDRLTPR  390 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~---~~~~~~ig~v~Q~~~-l~~~lTv~  390 (601)
                      +++++...-++.+++++...   +|++++++       +..|..++.+.+...   ...++++||+||++. +++.+|+.
T Consensus        24 ~~vsl~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~  100 (279)
T PRK13650         24 NDVSFHVKQGEWLSIIGHNG---SGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVE  100 (279)
T ss_pred             eeeEEEEeCCCEEEEECCCC---CCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHH
Confidence            78888888999999997532   45554432       333444444444322   123567999999974 67788999


Q ss_pred             HHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHH
Q psy7365         391 EHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW  470 (601)
Q Consensus       391 E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~  470 (601)
                      ||+.|.....+.+..+..+++.++++.++|.+..++++.+||||||||++||+||+.+|++|||||||+|||+.+++.++
T Consensus       101 eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~  180 (279)
T PRK13650        101 DDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI  180 (279)
T ss_pred             HHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence            99988655556665566678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         471 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       471 ~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ++|++++++ |+|||++||+++++. +|||+++|++|+++..|+++++..
T Consensus       181 ~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~~g~~~~~~~  229 (279)
T PRK13650        181 KTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRELFS  229 (279)
T ss_pred             HHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHc
Confidence            999999865 999999999999995 799999999999999999998764

>PRK10908 cell division protein FtsE; Provisional

Probab=99.97  E-value=4.2e-30  Score=256.53  Aligned_cols=191  Identities=18%  Similarity=0.213  Sum_probs=155.4

Q ss_pred             CcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc------ccccccccCCCC
Q psy7365         314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA------PQKSYIGYCPQF  380 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~------~~~~~ig~v~Q~  380 (601)
                      +++++   |++++...-++.+++++...   .|++++++       +..|+.++.+.++...      ..++.++|+||+
T Consensus        14 ~~~~l---~~vsl~i~~Ge~~~i~G~nG---sGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~   87 (222)
T PRK10908         14 GRQAL---QGVTFHMRPGEMAFLTGHSG---AGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQD   87 (222)
T ss_pred             CCeEE---eeeeEEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecC
Confidence            34554   89999999999999997522   45554432       2334433333333211      134679999999


Q ss_pred             cccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCC
Q psy7365         381 DALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG  460 (601)
Q Consensus       381 ~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsG  460 (601)
                      +.+++.+|+.||+.+....++....+..+++.++++.+++.+..++++.+||||||||++||+||+.+|++|||||||+|
T Consensus        88 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~  167 (222)
T PRK10908         88 HHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGN  167 (222)
T ss_pred             ccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCc
Confidence            98888999999998865555554444556788999999999888999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEE
Q psy7365         461 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTC  510 (601)
Q Consensus       461 LD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~  510 (601)
                      ||+.+++.++++|++++++|.|||++||+++++..+|||+++|++|+++.
T Consensus       168 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        168 LDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence            99999999999999997778999999999999999999999999999854

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.97  E-value=3.8e-30  Score=254.75  Aligned_cols=186  Identities=26%  Similarity=0.449  Sum_probs=151.6

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC--cccccccccCCCCcccCCCCCHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS--APQKSYIGYCPQFDALNDRLTPREH  392 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~--~~~~~~ig~v~Q~~~l~~~lTv~E~  392 (601)
                      +++++-..-+ ++++++...   .|++++++       +..|+.++.+.+...  ...++.++|+||++.+++.+|+.||
T Consensus        17 ~~vs~~i~~g-~~~i~G~nG---sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~   92 (211)
T cd03264          17 DGVSLTLGPG-MYGLLGPNG---AGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREF   92 (211)
T ss_pred             cceeEEEcCC-cEEEECCCC---CCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHH
Confidence            8888877777 888887421   45554432       233443333333221  1235679999999999999999999


Q ss_pred             HHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHH
Q psy7365         393 LEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTC  472 (601)
Q Consensus       393 L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~l  472 (601)
                      +.+....++.+..+..+.+.++++.+++.+..++++.+||||||||++||+||+.+|+++||||||+|||+.+++.++++
T Consensus        93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~  172 (211)
T cd03264          93 LDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNL  172 (211)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence            99876655554444556788999999999888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEec
Q psy7365         473 IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  512 (601)
Q Consensus       473 L~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G  512 (601)
                      |+++++ +.|||++|||++++..+|||+++|++|+++..|
T Consensus       173 l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g  211 (211)
T cd03264         173 LSELGE-DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG  211 (211)
T ss_pred             HHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence            999876 599999999999999999999999999998764

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.2e-30  Score=295.86  Aligned_cols=193  Identities=23%  Similarity=0.302  Sum_probs=157.2

Q ss_pred             cchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccC
Q psy7365          46 GAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI  119 (601)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~  119 (601)
                      +..++.+++|++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.+++.  
T Consensus       309 ~~~~l~~~~l~~~y~~----~~il~~isl~i~~Ge~~~l~G~NGs--GKSTL------lk~l~G~~~p~~G~i~~~~~--  374 (638)
T PRK10636        309 PNPLLKMEKVSAGYGD----RIILDSIKLNLVPGSRIGLLGRNGA--GKSTL------IKLLAGELAPVSGEIGLAKG--  374 (638)
T ss_pred             CCceEEEEeeEEEeCC----eeeeccceEEECCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCCeEEECCC--
Confidence            5567789999999864    4599999999988      999999  57665      67999999999999999641  


Q ss_pred             CCchHHhcccEEEEccCC--CCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC-cccCCccccCChHHHhhhh
Q psy7365         120 RTDMTTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP-HKRTSLANTLSGGMQRKLD  196 (601)
Q Consensus       120 ~~~~~~~~~~ig~v~Q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qr~~  196 (601)
                              ..+||+||++  .+++..|+.+++...      .......++.++|+.||+. +..++++.+|||||||||+
T Consensus       375 --------~~igy~~Q~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~  440 (638)
T PRK10636        375 --------IKLGYFAQHQLEFLRADESPLQHLARL------APQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLV  440 (638)
T ss_pred             --------EEEEEecCcchhhCCccchHHHHHHHh------CchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHH
Confidence                    2599999985  356677888876421      1222345688999999997 4689999999999999997


Q ss_pred             chhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccC
Q psy7365         197 NVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFV  276 (601)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  276 (601)
                      +|++                                      ++.                                   
T Consensus       441 La~~--------------------------------------l~~-----------------------------------  447 (638)
T PRK10636        441 LALI--------------------------------------VWQ-----------------------------------  447 (638)
T ss_pred             HHHH--------------------------------------Hhc-----------------------------------
Confidence            5443                                      222                                   


Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccc-cccC
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQ-CCGS  347 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv-~~G~  347 (601)
                      +|++|||||||+|||+.++..+.+.|.++       .| |||++|||++++..+||++++|.+|+++ ..|+
T Consensus       448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-------~g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~  511 (638)
T PRK10636        448 RPNLLLLDEPTNHLDLDMRQALTEALIDF-------EG-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGD  511 (638)
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-------CC-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCC
Confidence            25899999999999999999999999874       34 9999999999999999999999999986 4443

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.97  E-value=2.3e-30  Score=255.33  Aligned_cols=185  Identities=24%  Similarity=0.322  Sum_probs=148.6

Q ss_pred             cEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcccccccccCCCCcc-cCCC
Q psy7365         315 RTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAPQKSYIGYCPQFDA-LNDR  386 (601)
Q Consensus       315 ~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~~~~~ig~v~Q~~~-l~~~  386 (601)
                      ++++   +++++...-++.+++++...   .|++++++       +..|..++.+.+......++.+||+||++. .++.
T Consensus        13 ~~~l---~~v~~~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~   86 (205)
T cd03226          13 TEIL---DDLSLDLYAGEIIALTGKNG---AGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFT   86 (205)
T ss_pred             Ccee---eeeeEEEcCCCEEEEECCCC---CCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhh
Confidence            4555   88888888999999997522   45555433       233333333333322234567999999974 3446


Q ss_pred             CCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHH
Q psy7365         387 LTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR  466 (601)
Q Consensus       387 lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~  466 (601)
                      +|++||+.++....+.    ..+++.++++.++|.+..++++.+||||||||++||+||+.+|+++||||||+|||+.++
T Consensus        87 ~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~  162 (205)
T cd03226          87 DSVREELLLGLKELDA----GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNM  162 (205)
T ss_pred             ccHHHHHhhhhhhcCc----cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHH
Confidence            7999999876543321    124678999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEE
Q psy7365         467 RFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT  509 (601)
Q Consensus       467 ~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv  509 (601)
                      +.++++|++++++|+|||++||+++++..+|||+++|++|+++
T Consensus       163 ~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         163 ERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence            9999999999777999999999999999999999999999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=4.1e-30  Score=270.79  Aligned_cols=194  Identities=20%  Similarity=0.263  Sum_probs=158.2

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-------------------cccccccc
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-------------------APQKSYIG  375 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-------------------~~~~~~ig  375 (601)
                      +++++...-++.+++++...   +|++++++       +..|+.++.+.+...                   ...++.+|
T Consensus        43 ~~vsl~i~~Ge~~~I~G~nG---sGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig  119 (320)
T PRK13631         43 NNISYTFEKNKIYFIIGNSG---SGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVS  119 (320)
T ss_pred             eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEE
Confidence            78888888899999997522   45554432       333444443333211                   12357799


Q ss_pred             cCCCCc--ccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCC-cccccccCcCChHHHHHHHHHHHHhCCCCEE
Q psy7365         376 YCPQFD--ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNTPLI  452 (601)
Q Consensus       376 ~v~Q~~--~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~-~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lL  452 (601)
                      |+||++  .+++ .|++||+.|.....+.+..+..+++.++++.++|. +..++++.+||||||||++||+||+.+|++|
T Consensus       120 ~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iL  198 (320)
T PRK13631        120 MVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEIL  198 (320)
T ss_pred             EEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            999997  3554 59999998765444555555667788999999996 6789999999999999999999999999999


Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         453 FLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       453 lLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ||||||+|||+.+++.++++|++++++|+|||++|||++++..+|||+++|++|++++.|+++++..
T Consensus       199 LLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~  265 (320)
T PRK13631        199 IFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFT  265 (320)
T ss_pred             EEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            9999999999999999999999998779999999999999999999999999999999999998854

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=5e-30  Score=264.90  Aligned_cols=195  Identities=20%  Similarity=0.290  Sum_probs=160.8

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCC---cccccccccCCCCcc-cCCCCCHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKS---APQKSYIGYCPQFDA-LNDRLTPR  390 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~---~~~~~~ig~v~Q~~~-l~~~lTv~  390 (601)
                      |++++...-++.+++++...   .|+++++       ++..|+.++.+.+...   ...++.+||+||++. .+...|+.
T Consensus        21 ~~vsl~i~~Ge~~~i~G~NG---sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~   97 (277)
T PRK13652         21 NNINFIAPRNSRIAVIGPNG---AGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVE   97 (277)
T ss_pred             eEeEEEEcCCCEEEEECCCC---CCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHH
Confidence            89999999999999997522   4555443       2333444444443322   123467999999974 34468999


Q ss_pred             HHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHH
Q psy7365         391 EHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW  470 (601)
Q Consensus       391 E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~  470 (601)
                      ||+.+.....+.......+++.++++.++|.+..++++.+||||||||++||+||+.+|++|||||||+|||+.+++.++
T Consensus        98 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~  177 (277)
T PRK13652         98 QDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELI  177 (277)
T ss_pred             HHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence            99987655445555555667899999999998899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         471 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       471 ~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ++|++++++ |+|||++||+++++.++|||+++|++|+++..|+++++.+
T Consensus       178 ~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  227 (277)
T PRK13652        178 DFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL  227 (277)
T ss_pred             HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence            999999775 8999999999999999999999999999999999999864

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.97  E-value=7e-30  Score=259.07  Aligned_cols=193  Identities=22%  Similarity=0.315  Sum_probs=157.9

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cc-----cccccccccccCC-----cccccccccCCCCcccC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NS-----FARGYYLSLDMKS-----APQKSYIGYCPQFDALN  384 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~-----~g~g~~igld~~~-----~~~~~~ig~v~Q~~~l~  384 (601)
                      +++++...-++.+++++...   .|++++++       +.     .|+.++.+.+...     ...++.++|+||++.++
T Consensus        18 ~~vs~~i~~Ge~~~i~G~nG---sGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~   94 (247)
T TIGR00972        18 KNINLDIPKNQVTALIGPSG---CGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF   94 (247)
T ss_pred             cceeEEECCCCEEEEECCCC---CCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence            88999999999999997421   45554332       22     3444343433321     12356799999999888


Q ss_pred             CCCCHHHHHHHhHHhcCC-ChhHHHHHHHHHHHHcCCC----cccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCC
Q psy7365         385 DRLTPREHLEFYSRVRNL-PSVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTS  459 (601)
Q Consensus       385 ~~lTv~E~L~~~~~~~g~-~~~~~~~~~~~lLe~~~L~----~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTs  459 (601)
                      + .|++||+.+....++. +..+..+.+.++++.+++.    +..++++.+||||||||++||+||+.+|+++||||||+
T Consensus        95 ~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~  173 (247)
T TIGR00972        95 P-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTS  173 (247)
T ss_pred             C-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence            8 9999999886554442 3344556788999999998    67889999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         460 GMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       460 GLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      |||+.++..++++|+++++ ++|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus       174 ~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  232 (247)
T TIGR00972       174 ALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT  232 (247)
T ss_pred             cCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            9999999999999999876 4899999999999999999999999999999999988754

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.97  E-value=9.4e-30  Score=257.10  Aligned_cols=193  Identities=22%  Similarity=0.264  Sum_probs=156.7

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcc----cccccccCCCCcccCCCCCHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAP----QKSYIGYCPQFDALNDRLTPR  390 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~----~~~~ig~v~Q~~~l~~~lTv~  390 (601)
                      +++++...-++.+++++...   .|++++++       +..|+.++.+.+.....    .++.++|+||++.+++.+|++
T Consensus        19 ~~vs~~i~~Ge~~~l~G~nG---sGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   95 (242)
T TIGR03411        19 NDLSLYVDPGELRVIIGPNG---AGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVF   95 (242)
T ss_pred             eeeeEEEcCCcEEEEECCCC---CCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHH
Confidence            88898888999999997522   45554432       23344444443332111    234699999999999999999


Q ss_pred             HHHHHhHHhc--------CCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCC
Q psy7365         391 EHLEFYSRVR--------NLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD  462 (601)
Q Consensus       391 E~L~~~~~~~--------g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD  462 (601)
                      ||+.+.....        +......++++.++++.+++.+..++++.+||||||||++||+|++.+|++|+|||||+|||
T Consensus        96 ~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD  175 (242)
T TIGR03411        96 ENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMT  175 (242)
T ss_pred             HHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCC
Confidence            9998754311        11223345678899999999988899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHH
Q psy7365         463 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  518 (601)
Q Consensus       463 ~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~  518 (601)
                      +.++..++++|+++.+ ++|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus       176 ~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~  230 (242)
T TIGR03411       176 DEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ  230 (242)
T ss_pred             HHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence            9999999999999865 789999999999999999999999999999999998874

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=7e-30  Score=258.18  Aligned_cols=199  Identities=20%  Similarity=0.280  Sum_probs=161.2

Q ss_pred             CCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccC---------Cccccccccc
Q psy7365         313 SGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMK---------SAPQKSYIGY  376 (601)
Q Consensus       313 ~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~---------~~~~~~~ig~  376 (601)
                      .++.++   |++++...-++.+++++...   .|++++++       +..|+..+.+.+..         ....++.++|
T Consensus        13 ~~~~il---~~vsl~i~~Ge~~~i~G~nG---sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~   86 (242)
T PRK11124         13 GAHQAL---FDITLDCPQGETLVLLGPSG---AGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGM   86 (242)
T ss_pred             CCeeeE---eeeeeEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEE
Confidence            344554   89999999999999998522   45554432       23333333333321         0123567999


Q ss_pred             CCCCcccCCCCCHHHHHHH-hHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEE
Q psy7365         377 CPQFDALNDRLTPREHLEF-YSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLD  455 (601)
Q Consensus       377 v~Q~~~l~~~lTv~E~L~~-~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLD  455 (601)
                      +||++.+++.+|+.||+.+ ....++....+..+++.++++.+|+.+..++++.+||||||||++||+||+.+|+++|||
T Consensus        87 ~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilD  166 (242)
T PRK11124         87 VFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFD  166 (242)
T ss_pred             EecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            9999999999999999975 333444444444567889999999998899999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHH
Q psy7365         456 EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  517 (601)
Q Consensus       456 EPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L  517 (601)
                      |||+|||+.++..++++|+++.++|+|||++||+++++..+|||+++|++|+++..|+++++
T Consensus       167 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  228 (242)
T PRK11124        167 EPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF  228 (242)
T ss_pred             CCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence            99999999999999999999977799999999999999999999999999999999998765

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.97  E-value=1.1e-30  Score=292.50  Aligned_cols=178  Identities=28%  Similarity=0.395  Sum_probs=142.0

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM  123 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~  123 (601)
                      +.++||++.|+.   ..++++|+||++++      .|||||  |||||      .++|+|+++|++|+|.++|.++..-.
T Consensus       335 I~~~~vsf~Y~~---~~~vL~~isl~i~~G~~vaIvG~SGs--GKSTL------l~lL~g~~~p~~G~I~i~g~~i~~~~  403 (529)
T TIGR02868       335 LELRDLSFGYPG---SPPVLDGVSLDLPPGERVAILGPSGS--GKSTL------LMLLTGLLDPLQGEVTLDGVSVSSLQ  403 (529)
T ss_pred             EEEEEEEEecCC---CCceeecceEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCcEEEECCEEhhhHH
Confidence            559999999853   23599999999988      999999  56655      57999999999999999999987555


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCccc-----------CCccccCChHHH
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKR-----------TSLANTLSGGMQ  192 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG~~  192 (601)
                      ..+|+.+|||||+|.+|. -|++||+.++..  ..+    ++++.++++..|+.+..           ......||||||
T Consensus       404 ~~lr~~i~~V~Q~~~lF~-~TI~eNI~~g~~--~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQr  476 (529)
T TIGR02868       404 DELRRRISVFAQDAHLFD-TTVRDNLRLGRP--DAT----DEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGER  476 (529)
T ss_pred             HHHHhheEEEccCccccc-ccHHHHHhccCC--CCC----HHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHH
Confidence            567889999999999985 499999988632  122    23455666666654432           233467999999


Q ss_pred             hhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHh
Q psy7365         193 RKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFA  272 (601)
Q Consensus       193 qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  272 (601)
                      ||+++|||++.|                                                                    
T Consensus       477 QRiaiARall~~--------------------------------------------------------------------  488 (529)
T TIGR02868       477 QRLALARALLAD--------------------------------------------------------------------  488 (529)
T ss_pred             HHHHHHHHHhcC--------------------------------------------------------------------
Confidence            999876554433                                                                    


Q ss_pred             hccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecch
Q psy7365         273 MSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYM  324 (601)
Q Consensus       273 ~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl  324 (601)
                           |+++|||||||+||+.+...+.+.+.++      .+++|+|++||++
T Consensus       489 -----~~iliLDE~TSaLD~~te~~I~~~l~~~------~~~~TvIiItHrl  529 (529)
T TIGR02868       489 -----APILLLDEPTEHLDAGTESELLEDLLAA------LSGKTVVVITHHL  529 (529)
T ss_pred             -----CCEEEEeCCcccCCHHHHHHHHHHHHHh------cCCCEEEEEecCC
Confidence                 4899999999999999999999999875      3589999999984

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.97  E-value=5.1e-30  Score=254.03  Aligned_cols=188  Identities=19%  Similarity=0.264  Sum_probs=153.7

Q ss_pred             cEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc------ccccccccCCCCc
Q psy7365         315 RTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA------PQKSYIGYCPQFD  381 (601)
Q Consensus       315 ~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~------~~~~~ig~v~Q~~  381 (601)
                      ++++   +++++...-++.+++++...   .|++++++       +..|..++.+.+....      ..++.++|+||++
T Consensus        14 ~~~l---~~~sl~i~~G~~~~i~G~nG---sGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~   87 (214)
T cd03292          14 TAAL---DGINISISAGEFVFLVGPSG---AGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDF   87 (214)
T ss_pred             ceee---eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCc
Confidence            4555   88899889999999998522   45554432       2333333333332211      1346799999999


Q ss_pred             ccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCC
Q psy7365         382 ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGM  461 (601)
Q Consensus       382 ~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGL  461 (601)
                      .+++.+|++||+.+....++.......+++.++++.+++.+..++++.+||||||||++||+||+.+|+++||||||+||
T Consensus        88 ~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L  167 (214)
T cd03292          88 RLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNL  167 (214)
T ss_pred             hhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcC
Confidence            99999999999988765555444455567889999999998889999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEE
Q psy7365         462 DPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF  508 (601)
Q Consensus       462 D~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~i  508 (601)
                      |+.+++.+++.|+++.++|+|||++||+++++..+||++++|++|++
T Consensus       168 D~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         168 DPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL  214 (214)
T ss_pred             CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            99999999999999977799999999999999999999999999974

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=5.6e-30  Score=264.15  Aligned_cols=194  Identities=22%  Similarity=0.293  Sum_probs=160.3

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCC----cccccccccCCCCcc-cCCCCCH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKS----APQKSYIGYCPQFDA-LNDRLTP  389 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~----~~~~~~ig~v~Q~~~-l~~~lTv  389 (601)
                      +++++...-++.+++++...   .|+++++       ++..|..++.+.+...    ...++.+||+||++. .+...|+
T Consensus        19 ~~vsl~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv   95 (274)
T PRK13644         19 ENINLVIKKGEYIGIIGKNG---SGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTV   95 (274)
T ss_pred             eeeEEEEeCCCEEEEECCCC---CCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchH
Confidence            88999999999999997522   4555443       2333444444443322    123467999999975 4667899


Q ss_pred             HHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHH
Q psy7365         390 REHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFL  469 (601)
Q Consensus       390 ~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i  469 (601)
                      .||+.+....++.+..+..+++.++++.++|.+..++++.+||||||||++||+||+.+|+++||||||+|||+.++..+
T Consensus        96 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l  175 (274)
T PRK13644         96 EEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAV  175 (274)
T ss_pred             HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence            99998866555555555567788999999999989999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         470 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       470 ~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ++.|++++++|+|||++|||++++. .|||+++|++|++++.|+++++..
T Consensus       176 ~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~  224 (274)
T PRK13644        176 LERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENVLS  224 (274)
T ss_pred             HHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHHHHhc
Confidence            9999999877999999999999995 599999999999999999998754

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=7.7e-30  Score=262.54  Aligned_cols=201  Identities=20%  Similarity=0.313  Sum_probs=161.4

Q ss_pred             CCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccC--C---cccccccccCCCC
Q psy7365         313 SGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMK--S---APQKSYIGYCPQF  380 (601)
Q Consensus       313 ~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~--~---~~~~~~ig~v~Q~  380 (601)
                      .++.++   +++++...-++.+++++...   .|++++++       +..|..++.+.++.  .   ...++.+||+||+
T Consensus        12 ~~~~il---~~isl~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~   85 (271)
T PRK13638         12 QDEPVL---KGLNLDFSLSPVTGLVGANG---CGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQD   85 (271)
T ss_pred             CCcccc---cceEEEEcCCCEEEEECCCC---CCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeC
Confidence            344444   88888888999999997522   45555443       23344333343332  1   1234679999999


Q ss_pred             ccc-CCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCC
Q psy7365         381 DAL-NDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTS  459 (601)
Q Consensus       381 ~~l-~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTs  459 (601)
                      +.+ +...|+.+|+.+....++....+..+++.++++.+++.+..++++.+||||||||++||+||+.+|++|||||||+
T Consensus        86 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~  165 (271)
T PRK13638         86 PEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTA  165 (271)
T ss_pred             hhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence            753 3456899999876555555444455678889999999988899999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         460 GMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       460 GLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      |||+.++..++++|++++++|+|||++|||++++..+|||+++|++|++++.|+++++..
T Consensus       166 ~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  225 (271)
T PRK13638        166 GLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA  225 (271)
T ss_pred             cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            999999999999999998779999999999999999999999999999999999988754

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.97  E-value=1e-29  Score=268.43  Aligned_cols=149  Identities=25%  Similarity=0.396  Sum_probs=137.5

Q ss_pred             ccccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCC
Q psy7365         371 KSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP  450 (601)
Q Consensus       371 ~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~  450 (601)
                      ++.+||+||++.+|+.+|++||+.|....++.+..+.+++++++++.++|.+..++++.+||||||||++||+||+.+|+
T Consensus        41 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~  120 (325)
T TIGR01187        41 LRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPK  120 (325)
T ss_pred             HCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence            56799999999999999999999987665555545556678999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         451 LIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       451 lLlLDEPTsGLD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ++||||||+|||+.+++.+++.|+++.++ |+|||++|||++++..+|||+++|++|+++..|+++++.+
T Consensus       121 lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~  190 (325)
T TIGR01187       121 ILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYE  190 (325)
T ss_pred             EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999999999999999998765 8999999999999999999999999999999999998865

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1e-29  Score=268.54  Aligned_cols=196  Identities=20%  Similarity=0.265  Sum_probs=161.0

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc------ccccccccCCCCc--ccCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA------PQKSYIGYCPQFD--ALNDR  386 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~------~~~~~ig~v~Q~~--~l~~~  386 (601)
                      +++++...-++.+++++...   +|++++++       ...|+.++.+.++...      ..++++||+||++  .+.+.
T Consensus        32 ~~vsl~i~~Ge~~~IvG~sG---sGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~  108 (327)
T PRK11308         32 DGVSFTLERGKTLAVVGESG---CGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPR  108 (327)
T ss_pred             eeeEEEECCCCEEEEECCCC---CcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCc
Confidence            89999999999999997521   44444322       2334444444443221      2356799999997  58888


Q ss_pred             CCHHHHHHHhHHhc-CCChhHHHHHHHHHHHHcCCC-cccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHH
Q psy7365         387 LTPREHLEFYSRVR-NLPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG  464 (601)
Q Consensus       387 lTv~E~L~~~~~~~-g~~~~~~~~~~~~lLe~~~L~-~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~  464 (601)
                      +|+.+++.+....+ +....+.++++.++++.+||. ...++++.+||||||||++||+||+.+|++||+||||+|||+.
T Consensus       109 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~  188 (327)
T PRK11308        109 KKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVS  188 (327)
T ss_pred             cCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHH
Confidence            99999987655443 344555667889999999996 4679999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         465 ARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       465 ~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      ++.+++++|++++++ |.|||++|||++++..+||||++|++|+++..|+++++.+.
T Consensus       189 ~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~~  245 (327)
T PRK11308        189 VQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNN  245 (327)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence            999999999999765 99999999999999999999999999999999999998764

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=9.9e-30  Score=255.81  Aligned_cols=189  Identities=21%  Similarity=0.313  Sum_probs=154.1

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcc------c-ccccccCCCCcccCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAP------Q-KSYIGYCPQFDALNDRL  387 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~------~-~~~ig~v~Q~~~l~~~l  387 (601)
                      +++++...-++.+++++...   .|++++++       +..|+.++.+.+.....      . ++.+||+||++.+++.+
T Consensus        26 ~~isl~i~~Ge~~~l~G~nG---sGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~  102 (233)
T PRK11629         26 HNVSFSIGEGEMMAIVGSSG---SGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDF  102 (233)
T ss_pred             EeeEEEEcCCcEEEEECCCC---CCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCC
Confidence            88999989999999997522   45554432       33344444444432211      1 25699999999999999


Q ss_pred             CHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHH
Q psy7365         388 TPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARR  467 (601)
Q Consensus       388 Tv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~  467 (601)
                      |++||+.+...+.+....+.++++.++++.++|.+..++++.+||||||||++||+|++.+|++|||||||+|||+.+++
T Consensus       103 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~  182 (233)
T PRK11629        103 TALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNAD  182 (233)
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence            99999988655444444455567889999999998889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh-CCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCH
Q psy7365         468 FLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA  514 (601)
Q Consensus       468 ~i~~lL~~l~~-~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~  514 (601)
                      .++++|+++++ +|+|||++|||+++++.+ |++++|++|++++.++.
T Consensus       183 ~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~~~~~  229 (233)
T PRK11629        183 SIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTAELSL  229 (233)
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEEEecc
Confidence            99999999875 589999999999999885 69999999999988763

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.97  E-value=9.9e-30  Score=260.02  Aligned_cols=200  Identities=21%  Similarity=0.320  Sum_probs=160.2

Q ss_pred             CcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC---cccccccccCCCCccc
Q psy7365         314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS---APQKSYIGYCPQFDAL  383 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~---~~~~~~ig~v~Q~~~l  383 (601)
                      ++.++   +++++...-++.+++++...   .|++++++       +..|..++.+.+...   ...++.++|+||++.+
T Consensus        14 ~~~il---~~is~~i~~Ge~~~i~G~nG---sGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~   87 (258)
T PRK13548         14 GRTLL---DDVSLTLRPGEVVAILGPNG---AGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSL   87 (258)
T ss_pred             Ceeee---eeeeEEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcC
Confidence            44444   88999999999999997522   45554432       233433333333221   1224579999999988


Q ss_pred             CCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHh------CCCCEEEEECC
Q psy7365         384 NDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL------GNTPLIFLDEP  457 (601)
Q Consensus       384 ~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~------~~P~lLlLDEP  457 (601)
                      ++.+|++||+.+.....+.......+.+.++++.+++.+..++++.+||||||||++||+||+      .+|++||||||
T Consensus        88 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEP  167 (258)
T PRK13548         88 SFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEP  167 (258)
T ss_pred             CCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCC
Confidence            888999999987543333222334456889999999998889999999999999999999999      59999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         458 TSGMDPGARRFLWTCIERAV-SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       458 TsGLD~~~~~~i~~lL~~l~-~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      |+|||+.+++.+.++|+++. ++|+|||++|||++++..+|||+++|++|+++..|+++++..
T Consensus       168 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  230 (258)
T PRK13548        168 TSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT  230 (258)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence            99999999999999999997 669999999999999999999999999999999999887643

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=7.4e-30  Score=263.96  Aligned_cols=194  Identities=20%  Similarity=0.270  Sum_probs=161.2

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCc---ccccccccCCCCcc-cCCCCCHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSA---PQKSYIGYCPQFDA-LNDRLTPR  390 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~---~~~~~ig~v~Q~~~-l~~~lTv~  390 (601)
                      +++++...-++.+++++...   .|+++++       ++..|+.++.+.+....   ..++.+||+||++. +++..|+.
T Consensus        24 ~~vsl~i~~Ge~~~i~G~nG---aGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~  100 (279)
T PRK13635         24 KDVSFSVYEGEWVAIVGHNG---SGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQ  100 (279)
T ss_pred             eeeEEEEcCCCEEEEECCCC---CcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHH
Confidence            88898888999999997522   4555443       23344444445443321   23567999999974 67778999


Q ss_pred             HHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHH
Q psy7365         391 EHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW  470 (601)
Q Consensus       391 E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~  470 (601)
                      ||+.+.....+.+.++..+++.++++.++|.+..++++.+||||||||++||+||+.+|++|||||||+|||+.+++.++
T Consensus       101 enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~  180 (279)
T PRK13635        101 DDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVL  180 (279)
T ss_pred             HHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence            99988765555555555677899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         471 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       471 ~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ++|++++++ |+|||++||++++++. |||+++|++|++++.|+++++..
T Consensus       181 ~~l~~l~~~~~~tilivsH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~  229 (279)
T PRK13635        181 ETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIFK  229 (279)
T ss_pred             HHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHhc
Confidence            999999876 8999999999999975 99999999999999999988754

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.97  E-value=5.6e-30  Score=253.38  Aligned_cols=187  Identities=24%  Similarity=0.355  Sum_probs=150.0

Q ss_pred             cEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC---cccccccccCCCCcc-c
Q psy7365         315 RTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS---APQKSYIGYCPQFDA-L  383 (601)
Q Consensus       315 ~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~---~~~~~~ig~v~Q~~~-l  383 (601)
                      ++++   +++++...-++.+++++...   .|++++++       +..|+.++.+.+...   ...++.++|+||++. .
T Consensus        14 ~~il---~~vs~~i~~G~~~~l~G~nG---sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~   87 (211)
T cd03225          14 RPAL---DDISLTIKKGEFVLIVGPNG---SGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQ   87 (211)
T ss_pred             eeee---cceEEEEcCCcEEEEECCCC---CCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhh
Confidence            4554   88898888999999997422   45555433       223333333333221   123567999999975 3


Q ss_pred             CCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCH
Q psy7365         384 NDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP  463 (601)
Q Consensus       384 ~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~  463 (601)
                      ++.+|+.||+.+....++.......+++.++++.++|.+..++++.+||||||||++||+||+.+|+++||||||+|||+
T Consensus        88 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~  167 (211)
T cd03225          88 FFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDP  167 (211)
T ss_pred             cCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence            66789999998765544444444456788999999999888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCE
Q psy7365         464 GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ  507 (601)
Q Consensus       464 ~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~  507 (601)
                      .++..+++.|++++++|+|||++|||++++..+|||+++|++|+
T Consensus       168 ~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~  211 (211)
T cd03225         168 AGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK  211 (211)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence            99999999999998779999999999999999999999999985

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.97  E-value=2.7e-30  Score=318.39  Aligned_cols=203  Identities=20%  Similarity=0.264  Sum_probs=164.1

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++||+++|+.  ...++|+|+||++++      +|||||  |||||      .++|.|+++|++|+|.+||.|+.+ +
T Consensus      1235 I~f~nVsf~Y~~--~~~~vL~~isl~I~~GekvaIVG~SGS--GKSTL------~~lL~rl~~p~~G~I~IdG~di~~i~ 1304 (1495)
T PLN03232       1235 IKFEDVHLRYRP--GLPPVLHGLSFFVSPSEKVGVVGRTGA--GKSSM------LNALFRIVELEKGRIMIDDCDVAKFG 1304 (1495)
T ss_pred             EEEEEEEEEECC--CCCcccccceEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCcCCCceEEECCEEhhhCC
Confidence            559999999842  234699999999998      999999  56654      569999999999999999999965 5


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCccccCChHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPH-----------KRTSLANTLSGGM  191 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgG~  191 (601)
                      ...+|+++++|||+|.+|.. |++||+.++.   ..+.+    ++.++++..++.+           ........|||||
T Consensus      1305 ~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~---~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQ 1376 (1495)
T PLN03232       1305 LTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS---EHNDA----DLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQ 1376 (1495)
T ss_pred             HHHHHhhcEEECCCCeeeCc-cHHHHcCCCC---CCCHH----HHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHH
Confidence            66789999999999999975 9999997642   23333    3445555555433           3344456899999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||+++|||++.+                                                                   
T Consensus      1377 rQrlaLARALLr~------------------------------------------------------------------- 1389 (1495)
T PLN03232       1377 RQLLSLARALLRR------------------------------------------------------------------- 1389 (1495)
T ss_pred             HHHHHHHHHHHhC-------------------------------------------------------------------
Confidence            9999866544332                                                                   


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                            |++||||||||+||+.+.+.+.+.|++.      .+++|+|+++|+++.+.+ ||+|++|++|+++..|++..
T Consensus      1390 ------~~ILILDEATSaLD~~Te~~Iq~~L~~~------~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt~~e 1455 (1495)
T PLN03232       1390 ------SKILVLDEATASVDVRTDSLIQRTIREE------FKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQE 1455 (1495)
T ss_pred             ------CCEEEEECCcccCCHHHHHHHHHHHHHH------cCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHH
Confidence                  4899999999999999999999999876      358999999999988875 99999999999998887644

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.97  E-value=1.7e-29  Score=254.02  Aligned_cols=201  Identities=23%  Similarity=0.379  Sum_probs=164.4

Q ss_pred             CCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc-ccccccccCCCCcccC
Q psy7365         313 SGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA-PQKSYIGYCPQFDALN  384 (601)
Q Consensus       313 ~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~-~~~~~ig~v~Q~~~l~  384 (601)
                      .+++++   +++++....++.+++++...   .|++++++       +..|..++.+.+.... ..++.+||+||++.++
T Consensus        11 ~~~~il---~~i~~~i~~Ge~~~i~G~nG---sGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~   84 (232)
T cd03300          11 GGFVAL---DGVSLDIKEGEFFTLLGPSG---CGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALF   84 (232)
T ss_pred             CCeeee---ccceEEECCCCEEEEECCCC---CCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccC
Confidence            344544   89999999999999998532   45554432       2223333333333221 1356799999999999


Q ss_pred             CCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHH
Q psy7365         385 DRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG  464 (601)
Q Consensus       385 ~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~  464 (601)
                      +.+|+.+|+.+....++.......+++.++++.+++.+..++.+.+||+|||||++||+||+.+|+++||||||+|||+.
T Consensus        85 ~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~  164 (232)
T cd03300          85 PHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK  164 (232)
T ss_pred             CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence            89999999987665555444445567889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         465 ARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       465 ~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      +++.++++|++++++ |+|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus       165 ~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~  220 (232)
T cd03300         165 LRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE  220 (232)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence            999999999999765 8999999999999999999999999999999999888754

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.97  E-value=3.6e-30  Score=290.19  Aligned_cols=199  Identities=20%  Similarity=0.268  Sum_probs=158.4

Q ss_pred             hhhcccccccccCCC-ccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365          50 SLFESLSENRDKLGI-DSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-  121 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-  121 (601)
                      +.++|+++.|+.... ..++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. 
T Consensus       338 i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGs--GKSTl------~~ll~g~~~p~~G~i~~~g~~i~~~  409 (555)
T TIGR01194       338 IELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGC--GKSTL------AKLFCGLYIPQEGEILLDGAAVSAD  409 (555)
T ss_pred             EEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCC--CHHHH------HHHHhCCCCCCCcEEEECCEECCCC
Confidence            458999999864322 34699999999988      999999  56655      579999999999999999999865 


Q ss_pred             chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCc------cccCChHHHhhh
Q psy7365         122 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSL------ANTLSGGMQRKL  195 (601)
Q Consensus       122 ~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~------~~~LSgG~~qr~  195 (601)
                      +....++.+++|+|++.+|. -|+++|.         .++..++++.++++.+++.+..++.      ...||||||||+
T Consensus       410 ~~~~~~~~i~~v~q~~~lf~-~ti~~n~---------~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRl  479 (555)
T TIGR01194       410 SRDDYRDLFSAIFADFHLFD-DLIGPDE---------GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRL  479 (555)
T ss_pred             CHHHHHhhCcEEccChhhhh-hhhhccc---------ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHH
Confidence            34567788999999998885 4778773         1122345678899999988765443      357999999999


Q ss_pred             hchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhcc
Q psy7365         196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSF  275 (601)
Q Consensus       196 ~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  275 (601)
                      ++|||++.+                                                                       
T Consensus       480 alaRall~~-----------------------------------------------------------------------  488 (555)
T TIGR01194       480 ALICAWLED-----------------------------------------------------------------------  488 (555)
T ss_pred             HHHHHHHcC-----------------------------------------------------------------------
Confidence            866544333                                                                       


Q ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHHHH-HHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc
Q psy7365         276 VPASTVILDEPTSGVDPYSRRSIWELLI-KVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  345 (601)
Q Consensus       276 ~~~~~liLDEPtsgLD~~~~~~l~~~l~-~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~  345 (601)
                        |+++||||||++||+.+.+.+++.+. .+     +..|+|+|++||+++.. ..||+|++|++|+++..
T Consensus       489 --~~ililDE~ts~LD~~~~~~i~~~l~~~~-----~~~~~tiiiisH~~~~~-~~~d~i~~l~~G~i~~~  551 (555)
T TIGR01194       489 --RPILLFDEWAADQDPAFKRFFYEELLPDL-----KRQGKTIIIISHDDQYF-ELADQIIKLAAGCIVKD  551 (555)
T ss_pred             --CCEEEEeCCccCCCHHHHHHHHHHHHHHH-----HhCCCEEEEEeccHHHH-HhCCEEEEEECCEEEEe
Confidence              58999999999999999999988654 33     23589999999999865 58999999999998653

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.97  E-value=8.1e-30  Score=272.17  Aligned_cols=193  Identities=21%  Similarity=0.297  Sum_probs=158.0

Q ss_pred             chhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-------cccccccccCCCCcccCCCCC
Q psy7365         323 YMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-------APQKSYIGYCPQFDALNDRLT  388 (601)
Q Consensus       323 dl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-------~~~~~~ig~v~Q~~~l~~~lT  388 (601)
                      ++++...-++.+++++...   .|++++++       +..|+.++.+.+...       ...++.+||+||++.+|+.+|
T Consensus        15 ~isl~i~~Gei~~l~G~nG---sGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t   91 (354)
T TIGR02142        15 DADFTLPGQGVTAIFGRSG---SGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS   91 (354)
T ss_pred             EEEEEECCCCEEEEECCCC---CCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence            6777778889999997422   45555432       233333333333221       123567999999999999999


Q ss_pred             HHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHH
Q psy7365         389 PREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRF  468 (601)
Q Consensus       389 v~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~  468 (601)
                      |+||+.|.....  ...+.+++++++++.++|.+..++++.+||||||||++||+||+.+|++|||||||+|||+.+++.
T Consensus        92 v~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~  169 (354)
T TIGR02142        92 VRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYE  169 (354)
T ss_pred             HHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHH
Confidence            999998854322  223344568899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         469 LWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       469 i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      +++.|+++.++ |+|||++|||++++..+|||+++|++|+++..|+++++...
T Consensus       170 l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  222 (354)
T TIGR02142       170 ILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS  222 (354)
T ss_pred             HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcC
Confidence            99999999775 89999999999999999999999999999999999998654

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PLN03130 ABC transporter C family member; Provisional

Probab=99.97  E-value=2e-30  Score=320.21  Aligned_cols=204  Identities=20%  Similarity=0.282  Sum_probs=164.8

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++||+++|..  ...++|+|+||++.+      +|||||  |||||      .++|.|+++|++|+|.+||.|+.+ +
T Consensus      1238 I~f~nVsf~Y~~--~~~~VL~~is~~I~~GekVaIVGrSGS--GKSTL------l~lL~rl~~p~~G~I~IDG~dI~~i~ 1307 (1622)
T PLN03130       1238 IKFEDVVLRYRP--ELPPVLHGLSFEISPSEKVGIVGRTGA--GKSSM------LNALFRIVELERGRILIDGCDISKFG 1307 (1622)
T ss_pred             EEEEEEEEEeCC--CCCceecceeEEEcCCCEEEEECCCCC--CHHHH------HHHHhCcCCCCCceEEECCEecccCC
Confidence            569999999842  234699999999988      999999  56654      569999999999999999999975 5


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC-----------cccCCccccCChHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP-----------HKRTSLANTLSGGM  191 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgG~  191 (601)
                      ...+|+++|+|||+|.+|.. |++||+.++.   ..+.+    ++.++++..++.           .........|||||
T Consensus      1308 l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~---~~tde----ei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQ 1379 (1622)
T PLN03130       1308 LMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN---EHNDA----DLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQ 1379 (1622)
T ss_pred             HHHHHhccEEECCCCccccc-cHHHHhCcCC---CCCHH----HHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHH
Confidence            67789999999999999976 9999997653   22322    344555555443           33344456899999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||++||||++.+                                                                   
T Consensus      1380 rQrlaLARALLr~------------------------------------------------------------------- 1392 (1622)
T PLN03130       1380 RQLLSLARALLRR------------------------------------------------------------------- 1392 (1622)
T ss_pred             HHHHHHHHHHHcC-------------------------------------------------------------------
Confidence            9999866543322                                                                   


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  351 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL  351 (601)
                            |++||||||||+||+.+.+.+.+.|++.      .+++|+|+++|+++.+.+ ||||++|++|+++..|++..+
T Consensus      1393 ------p~ILILDEATSaLD~~Te~~Iq~~I~~~------~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~Gt~~eL 1459 (1622)
T PLN03130       1393 ------SKILVLDEATAAVDVRTDALIQKTIREE------FKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENL 1459 (1622)
T ss_pred             ------CCEEEEECCCCCCCHHHHHHHHHHHHHH------CCCCEEEEEeCChHHHHh-CCEEEEEECCEEEEeCCHHHH
Confidence                  4899999999999999999999999986      358999999999999875 999999999999998876543

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=7.9e-30  Score=272.02  Aligned_cols=189  Identities=21%  Similarity=0.287  Sum_probs=156.2

Q ss_pred             chhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-------cccccccccCCCCcccCCCCC
Q psy7365         323 YMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-------APQKSYIGYCPQFDALNDRLT  388 (601)
Q Consensus       323 dl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-------~~~~~~ig~v~Q~~~l~~~lT  388 (601)
                      ++++...-++.+++++...   +|++++++       +..|..++.+.+...       ...++.+||+||++.+|+.+|
T Consensus        16 ~vsl~i~~Ge~~~l~G~nG---sGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t   92 (352)
T PRK11144         16 TVNLTLPAQGITAIFGRSG---AGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK   92 (352)
T ss_pred             EEEEEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence            6788888899999997522   45554432       223333333333211       123568999999999999999


Q ss_pred             HHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHH
Q psy7365         389 PREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRF  468 (601)
Q Consensus       389 v~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~  468 (601)
                      ++||+.|...      ....++++++++.++|.+..++++.+||||||||++||+||+.+|++|||||||+|||+.+++.
T Consensus        93 v~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~  166 (352)
T PRK11144         93 VRGNLRYGMA------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRE  166 (352)
T ss_pred             HHHHHHhhhh------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHH
Confidence            9999987432      1224568899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         469 LWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       469 i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      +++.|+++.++ |+|+|++|||++++..+|||+++|++|+++..|+++++.+.
T Consensus       167 l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~  219 (352)
T PRK11144        167 LLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWAS  219 (352)
T ss_pred             HHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhC
Confidence            99999999765 89999999999999999999999999999999999998654

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.96  E-value=8.3e-30  Score=256.20  Aligned_cols=191  Identities=22%  Similarity=0.273  Sum_probs=150.4

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcccccccccCCCCcccCCCCCHHHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLE  394 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~~~~~ig~v~Q~~~l~~~lTv~E~L~  394 (601)
                      +++++...-++.+++++...   .|++++++       +..|..++.+.+....  ....+|+||++.+++.+|+.||+.
T Consensus         2 ~~is~~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~~v~q~~~l~~~~tv~e~l~   76 (230)
T TIGR01184         2 KGVNLTIQQGEFISLIGHSG---CGKSTLLNLISGLAQPTSGGVILEGKQITEP--GPDRMVVFQNYSLLPWLTVRENIA   76 (230)
T ss_pred             CceeEEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCceEEECCEECCCC--ChhheEEecCcccCCCCCHHHHHH
Confidence            34555566788899987422   45555433       2333333333333221  123589999999999999999998


Q ss_pred             HhHH--hcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHH
Q psy7365         395 FYSR--VRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTC  472 (601)
Q Consensus       395 ~~~~--~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~l  472 (601)
                      +...  ..+....+..+++.++++.+++.+..++++.+||||||||++||+||+.+|++|||||||+|||+.+++.+++.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~  156 (230)
T TIGR01184        77 LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE  156 (230)
T ss_pred             HHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence            7532  12333344456688999999999888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHH
Q psy7365         473 IERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  517 (601)
Q Consensus       473 L~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L  517 (601)
                      |+++.++ |+|||++||+++++..+|||+++|++|+++..|++.++
T Consensus       157 l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  202 (230)
T TIGR01184       157 LMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV  202 (230)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence            9998765 89999999999999999999999999999988865543

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.5e-29  Score=267.12  Aligned_cols=197  Identities=18%  Similarity=0.169  Sum_probs=159.2

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------c----ccccccccccccCCcc-------cccccccCCCCc--
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------N----SFARGYYLSLDMKSAP-------QKSYIGYCPQFD--  381 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~----~~g~g~~igld~~~~~-------~~~~ig~v~Q~~--  381 (601)
                      +++++...-++.+++++...   +|++++++       .    +.|+..+.+.++....       .++.++|+||++  
T Consensus        24 ~~vsl~i~~Ge~~~lvG~sG---sGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~  100 (326)
T PRK11022         24 DRISYSVKQGEVVGIVGESG---SGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMT  100 (326)
T ss_pred             eeeEEEECCCCEEEEECCCC---ChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchh
Confidence            89999999999999998521   44443321       1    2233344444432211       124699999997  


Q ss_pred             ccCCCCCHHHHHHHhHHhc-CCChhHHHHHHHHHHHHcCCCc---ccccccCcCChHHHHHHHHHHHHhCCCCEEEEECC
Q psy7365         382 ALNDRLTPREHLEFYSRVR-NLPSVLLNTIVNESLNKFALGH---YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEP  457 (601)
Q Consensus       382 ~l~~~lTv~E~L~~~~~~~-g~~~~~~~~~~~~lLe~~~L~~---~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEP  457 (601)
                      .+++.+|+.+++....... +...++.++++.++|+.++|.+   ..++++.+|||||||||+||+||+.+|++||+|||
T Consensus       101 ~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEP  180 (326)
T PRK11022        101 SLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP  180 (326)
T ss_pred             hcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence            4788899998887655433 4455556678999999999964   46889999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHh
Q psy7365         458 TSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKY  521 (601)
Q Consensus       458 TsGLD~~~~~~i~~lL~~l~~-~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~  521 (601)
                      |+|||+.++.+++++|+++++ .|.|+|++|||++++..+||||++|++|+|+..|+++++.+..
T Consensus       181 ts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~~~p  245 (326)
T PRK11022        181 TTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAP  245 (326)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCC
Confidence            999999999999999999976 4999999999999999999999999999999999999987643

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.96  E-value=4.8e-30  Score=288.66  Aligned_cols=197  Identities=19%  Similarity=0.263  Sum_probs=156.6

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      ..++|+++.|+.   ..++++|+||++.+      .|||||  |||||      .++|+|+++|++|+|+++|.++.. +
T Consensus       323 i~~~~v~f~y~~---~~~~l~~i~~~i~~G~~~aivG~sGs--GKSTL------~~ll~g~~~~~~G~i~~~g~~~~~~~  391 (547)
T PRK10522        323 LELRNVTFAYQD---NGFSVGPINLTIKRGELLFLIGGNGS--GKSTL------AMLLTGLYQPQSGEILLDGKPVTAEQ  391 (547)
T ss_pred             EEEEEEEEEeCC---CCeEEecceEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCeEEEECCEECCCCC
Confidence            459999999852   24699999999998      999999  56665      579999999999999999999865 4


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCc-----cccCChHHHhhhhc
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSL-----ANTLSGGMQRKLDN  197 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~~qr~~~  197 (601)
                      ....++.++|+||++.+|. .|+++|        +  .+...+++.++++.+|+....+..     ..+||||||||+++
T Consensus       392 ~~~~~~~i~~v~q~~~lf~-~ti~~n--------~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~l  460 (547)
T PRK10522        392 PEDYRKLFSAVFTDFHLFD-QLLGPE--------G--KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLAL  460 (547)
T ss_pred             HHHHhhheEEEecChhHHH-Hhhccc--------c--CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHH
Confidence            5567889999999998885 477776        1  112234577889999987653321     35899999999986


Q ss_pred             hhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCC
Q psy7365         198 VKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVP  277 (601)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  277 (601)
                      |||++++                                                                         
T Consensus       461 ARal~~~-------------------------------------------------------------------------  467 (547)
T PRK10522        461 LLALAEE-------------------------------------------------------------------------  467 (547)
T ss_pred             HHHHhcC-------------------------------------------------------------------------
Confidence            6544333                                                                         


Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccccc
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  346 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G  346 (601)
                      |+++||||||++||+.+...+++.+.+..    +..|+|+|++||+.+. ...||++++|++|+++...
T Consensus       468 ~~ililDE~ts~LD~~~~~~i~~~l~~~~----~~~~~tvi~itH~~~~-~~~~d~i~~l~~G~i~e~~  531 (547)
T PRK10522        468 RDILLLDEWAADQDPHFRREFYQVLLPLL----QEMGKTIFAISHDDHY-FIHADRLLEMRNGQLSELT  531 (547)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHH----HhCCCEEEEEEechHH-HHhCCEEEEEECCEEEEec
Confidence            48999999999999999999999887642    2248999999999976 4589999999999987653

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.4e-29  Score=258.53  Aligned_cols=189  Identities=20%  Similarity=0.282  Sum_probs=155.6

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcccccccccCCCCcccCCCCCHHHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLE  394 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~~~~~ig~v~Q~~~l~~~lTv~E~L~  394 (601)
                      +++++...-++.+++++...   .|++++++       +..|+.++.+.+...  ....+||+||++.+++.+|+.||+.
T Consensus        18 ~~vs~~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~e~l~   92 (255)
T PRK11248         18 EDINLTLESGELLVVLGPSG---CGKTTLLNLIAGFVPYQHGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQDNVA   92 (255)
T ss_pred             eeeeEEECCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCcEEEECCEECCC--CCCcEEEEeCCCccCCCCcHHHHHH
Confidence            88999999999999997522   45555433       233444333433321  2345899999999999999999998


Q ss_pred             HhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q psy7365         395 FYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE  474 (601)
Q Consensus       395 ~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~  474 (601)
                      +....++....+..+++.++++.++|.+..++++.+||||||||++||+||+.+|++|||||||+|||+.+++.++++|+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~  172 (255)
T PRK11248         93 FGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLL  172 (255)
T ss_pred             hHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence            76555555544455678999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             HHHh-CCcEEEEEccChhHHHhhCCEEEEEe--CCEEEEecCHH
Q psy7365         475 RAVS-EGRCVILTSHNMEECEALCTKLTIMV--NGQFTCLGSAT  515 (601)
Q Consensus       475 ~l~~-~G~tVllsTHdl~e~~~l~drv~iL~--~G~iv~~G~~~  515 (601)
                      ++.+ +|+|||++|||++++..+|||+++|+  +|+++..++.+
T Consensus       173 ~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~  216 (255)
T PRK11248        173 KLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN  216 (255)
T ss_pred             HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence            9854 58999999999999999999999998  59999887754

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.96  E-value=1.7e-29  Score=249.78  Aligned_cols=203  Identities=23%  Similarity=0.331  Sum_probs=170.0

Q ss_pred             cCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc-------ccccccccccccccccCCcc----cccccccCCCC
Q psy7365         312 LSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV-------FLKNSFARGYYLSLDMKSAP----QKSYIGYCPQF  380 (601)
Q Consensus       312 ~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~-------lLk~~~g~g~~igld~~~~~----~~~~ig~v~Q~  380 (601)
                      ..|.+.+   .++++...-++.+.+++...   .|+++       +++++.++.++.+.++...+    .+..|+.-||.
T Consensus        14 FGGl~Al---~~Vsl~v~~Gei~~LIGPNG---AGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~   87 (250)
T COG0411          14 FGGLTAV---NDVSLEVRPGEIVGLIGPNG---AGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQI   87 (250)
T ss_pred             cCCEEEE---eceeEEEcCCeEEEEECCCC---CCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeeccc
Confidence            4455555   89999999999999997421   34443       34556666666666655433    24568888999


Q ss_pred             cccCCCCCHHHHHHHhHHhc-------C-----CChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCC
Q psy7365         381 DALNDRLTPREHLEFYSRVR-------N-----LPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGN  448 (601)
Q Consensus       381 ~~l~~~lTv~E~L~~~~~~~-------g-----~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~  448 (601)
                      ..+|+.|||.||+......+       +     ...++..+++.++|+.+||.+.++++.++||+|||+||.||+||+.+
T Consensus        88 ~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~  167 (250)
T COG0411          88 TRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQ  167 (250)
T ss_pred             ccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcC
Confidence            99999999999998753311       1     12355678899999999999999999999999999999999999999


Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         449 TPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       449 P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      |++|+||||.+||.|....++.++|++++++ |.||+++.|||+.+..+||||++|+.|+++++|+|+++.+.
T Consensus       168 P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~d  240 (250)
T COG0411         168 PKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNN  240 (250)
T ss_pred             CCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhcC
Confidence            9999999999999999999999999999875 79999999999999999999999999999999999998753

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.1e-29  Score=256.04  Aligned_cols=192  Identities=20%  Similarity=0.274  Sum_probs=155.0

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc----ccccccccCCCCcccCCCCCHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA----PQKSYIGYCPQFDALNDRLTPR  390 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~----~~~~~ig~v~Q~~~l~~~lTv~  390 (601)
                      +++++...-++.+++++...   .|++++++       +..|+..+.+.+....    ..++.++|+||++.+++.+|+.
T Consensus        22 ~~vs~~i~~Ge~~~i~G~nG---sGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   98 (237)
T PRK11614         22 HEVSLHINQGEIVTLIGANG---AGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVE   98 (237)
T ss_pred             eeeEEEEcCCcEEEEECCCC---CCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHH
Confidence            88899989999999997522   45544432       2334433344333221    1346799999999999989999


Q ss_pred             HHHHHhHHhcCCChhHHHHHHHHHHHHc-CCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHH
Q psy7365         391 EHLEFYSRVRNLPSVLLNTIVNESLNKF-ALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFL  469 (601)
Q Consensus       391 E~L~~~~~~~g~~~~~~~~~~~~lLe~~-~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i  469 (601)
                      ||+.+.....  ......+.+.++++.+ ++.+..++++.+||||||||++||+||+.+|+++||||||+|||+.+++.+
T Consensus        99 ~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l  176 (237)
T PRK11614         99 ENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQI  176 (237)
T ss_pred             HHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHH
Confidence            9998753221  1223344567788888 577777889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHH
Q psy7365         470 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  518 (601)
Q Consensus       470 ~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~  518 (601)
                      ++.|+++.++|+|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus       177 ~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  225 (237)
T PRK11614        177 FDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALL  225 (237)
T ss_pred             HHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence            9999999877999999999999999999999999999999999999885

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.96  E-value=9.1e-30  Score=252.06  Aligned_cols=184  Identities=22%  Similarity=0.299  Sum_probs=150.8

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-----cccccccccCCCCcccCCCCCH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-----APQKSYIGYCPQFDALNDRLTP  389 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-----~~~~~~ig~v~Q~~~l~~~lTv  389 (601)
                      +++++....++.+++++...   +|++++++       +..|+.++.+.+...     ...++.++|+||++.+++.+|+
T Consensus        17 ~~~s~~i~~G~~~~l~G~nG---sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~   93 (213)
T cd03262          17 KGIDLTVKKGEVVVIIGPSG---SGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTV   93 (213)
T ss_pred             cCceEEECCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcH
Confidence            88999989999999997522   45554432       233433333333311     1235679999999999999999


Q ss_pred             HHHHHHhHH-hcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHH
Q psy7365         390 REHLEFYSR-VRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRF  468 (601)
Q Consensus       390 ~E~L~~~~~-~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~  468 (601)
                      .||+.+... .++....+..+++.++++.+++.+..++++.+||||||||++||+||+.+|+++||||||+|||+.+++.
T Consensus        94 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~  173 (213)
T cd03262          94 LENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGE  173 (213)
T ss_pred             HHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence            999987643 3344444455678899999999988899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEE
Q psy7365         469 LWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF  508 (601)
Q Consensus       469 i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~i  508 (601)
                      ++++|++++++|+|||++||+++++..+||++++|++|++
T Consensus       174 l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         174 VLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI  213 (213)
T ss_pred             HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            9999999987799999999999999999999999999974

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.96  E-value=1.1e-29  Score=252.11  Aligned_cols=184  Identities=27%  Similarity=0.334  Sum_probs=148.1

Q ss_pred             chhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-------cccccccccCCCCcccCCCCC
Q psy7365         323 YMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-------APQKSYIGYCPQFDALNDRLT  388 (601)
Q Consensus       323 dl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-------~~~~~~ig~v~Q~~~l~~~lT  388 (601)
                      ++++...- +.+++++...   .|++++++       +..|+.++.+.+...       ...++.++|+||++.+++.+|
T Consensus        16 ~vsl~i~~-e~~~i~G~nG---sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   91 (214)
T cd03297          16 KIDFDLNE-EVTGIFGASG---AGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLN   91 (214)
T ss_pred             CceEEEcc-eeEEEECCCC---CCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCC
Confidence            78888778 9999997522   44444332       223333333332211       123567999999999999999


Q ss_pred             HHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHH
Q psy7365         389 PREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRF  468 (601)
Q Consensus       389 v~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~  468 (601)
                      +.||+.+....+  .....++++.++++.+++.+..++++.+||||||||++||+||+.+|+++||||||+|||+.+++.
T Consensus        92 ~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~  169 (214)
T cd03297          92 VRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQ  169 (214)
T ss_pred             HHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence            999998764322  222344578899999999988899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEec
Q psy7365         469 LWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  512 (601)
Q Consensus       469 i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G  512 (601)
                      ++++|++++++ |+|||++||+++++..+|||+++|++|++++.|
T Consensus       170 l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  214 (214)
T cd03297         170 LLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG  214 (214)
T ss_pred             HHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            99999999765 899999999999999999999999999998765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.8e-29  Score=260.56  Aligned_cols=195  Identities=21%  Similarity=0.271  Sum_probs=159.2

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-----cccccccccCCCCcc-cCCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-----APQKSYIGYCPQFDA-LNDRLT  388 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-----~~~~~~ig~v~Q~~~-l~~~lT  388 (601)
                      +++++...-++.+++++...   .|++++++       +..|+.++.+.+...     ...++.++|+||++. .+...|
T Consensus        19 ~~vsl~i~~Ge~~~l~G~nG---sGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t   95 (275)
T PRK13639         19 KGINFKAEKGEMVALLGPNG---AGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPT   95 (275)
T ss_pred             eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhcccc
Confidence            89999999999999997522   45554433       233444444433321     123567999999973 344579


Q ss_pred             HHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHH
Q psy7365         389 PREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRF  468 (601)
Q Consensus       389 v~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~  468 (601)
                      +.||+.+.....+....+..+++.++++.++|.++.++++.+||||||||++||+||+.+|+++||||||+|||+.++..
T Consensus        96 v~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~  175 (275)
T PRK13639         96 VEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ  175 (275)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence            99999875433344444555678899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         469 LWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       469 i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ++++|++++++|+|||++|||++++..+|||+++|++|++++.|+++++..
T Consensus       176 l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  226 (275)
T PRK13639        176 IMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS  226 (275)
T ss_pred             HHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            999999998779999999999999999999999999999999999998754

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.96  E-value=1.6e-29  Score=253.84  Aligned_cols=195  Identities=17%  Similarity=0.185  Sum_probs=155.1

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------c----ccccccccccccCCccc-ccccccCCCCcc--cCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------N----SFARGYYLSLDMKSAPQ-KSYIGYCPQFDA--LNDRL  387 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~----~~g~g~~igld~~~~~~-~~~ig~v~Q~~~--l~~~l  387 (601)
                      +++++-...++.+++++...   .|++++++       +    ..|+.++.+.+...... ++.++|++|++.  +++.+
T Consensus         3 ~~vs~~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~   79 (230)
T TIGR02770         3 QDLNLSLKRGEVLALVGESG---SGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF   79 (230)
T ss_pred             cceeEEEcCCCEEEEECCCC---CCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence            55666667888999997522   44444332       2    23444444433322222 357999999985  56678


Q ss_pred             CHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCC---cccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHH
Q psy7365         388 TPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG---HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG  464 (601)
Q Consensus       388 Tv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~---~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~  464 (601)
                      |+.+++.+.....+.......+++.++++.+++.   +..++++.+|||||||||+||+||+.+|++|||||||+|||+.
T Consensus        80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~  159 (230)
T TIGR02770        80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV  159 (230)
T ss_pred             CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence            9999997765444433344456789999999997   5678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         465 ARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       465 ~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      +++.+++.|++++++ |+|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus       160 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  215 (230)
T TIGR02770       160 NQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFY  215 (230)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            999999999998764 8999999999999999999999999999999999998854

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>KOG0057|consensus

Probab=99.96  E-value=2.6e-30  Score=278.15  Aligned_cols=200  Identities=25%  Similarity=0.406  Sum_probs=162.4

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.|+|++..|+   ...+.|+++||++.+      .|+|||  ||||     . .|+|.++.. ++|+|.|||.++.. .
T Consensus       352 I~F~dV~f~y~---~k~~iL~gvsf~I~kGekVaIvG~nGs--GKST-----i-lr~LlrF~d-~sG~I~IdG~dik~~~  419 (591)
T KOG0057|consen  352 IEFDDVHFSYG---PKRKVLKGVSFTIPKGEKVAIVGSNGS--GKST-----I-LRLLLRFFD-YSGSILIDGQDIKEVS  419 (591)
T ss_pred             EEEEeeEEEeC---CCCceecceeEEecCCCEEEEECCCCC--CHHH-----H-HHHHHHHhc-cCCcEEECCeeHhhhC
Confidence            56999999986   223499999999988      999999  4554     4 579999999 99999999999975 5


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCccccCChHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHK-----------RTSLANTLSGGM  191 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~  191 (601)
                      ...+|+.||||||+..+| +-||.+|+.++.-  ..+.    +++-++.+++|+.+.           .+.....|||||
T Consensus       420 ~~SlR~~Ig~VPQd~~LF-ndTIl~NI~YGn~--sas~----eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGe  492 (591)
T KOG0057|consen  420 LESLRQSIGVVPQDSVLF-NDTILYNIKYGNP--SASD----EEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGE  492 (591)
T ss_pred             hHHhhhheeEeCCccccc-chhHHHHhhcCCC--CcCH----HHHHHHHHHcCcHHHHHhccccchhhHhhcccccccch
Confidence            667899999999999988 5699999987642  1222    344555566665432           345567799999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      ||||++|||+++|                                                                   
T Consensus       493 kQrvslaRa~lKd-------------------------------------------------------------------  505 (591)
T KOG0057|consen  493 KQRVSLARAFLKD-------------------------------------------------------------------  505 (591)
T ss_pred             HHHHHHHHHHhcC-------------------------------------------------------------------
Confidence            9999876655544                                                                   


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                            |+++++|||||+||..+.+++.+.+.+.      ..|+|+|++-|+++.+. -||+|+++++|++...|+.
T Consensus       506 ------a~Il~~DEaTS~LD~~TE~~i~~~i~~~------~~~rTvI~IvH~l~ll~-~~DkI~~l~nG~v~e~gth  569 (591)
T KOG0057|consen  506 ------APILLLDEATSALDSETEREILDMIMDV------MSGRTVIMIVHRLDLLK-DFDKIIVLDNGTVKEYGTH  569 (591)
T ss_pred             ------CCeEEecCcccccchhhHHHHHHHHHHh------cCCCeEEEEEecchhHh-cCCEEEEEECCeeEEeccH
Confidence                  4799999999999999999999999874      47999999999998886 6999999999999888764

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2.1e-29  Score=256.45  Aligned_cols=194  Identities=16%  Similarity=0.216  Sum_probs=155.3

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcc----cccccccCCCCcccCCCCCHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAP----QKSYIGYCPQFDALNDRLTPR  390 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~----~~~~ig~v~Q~~~l~~~lTv~  390 (601)
                      +++++...-++.+++++...   .|++++++       +..|...+.+.+.....    .+..++|+||++.+++.+|+.
T Consensus        22 ~~is~~i~~Ge~~~l~G~nG---sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   98 (255)
T PRK11300         22 NNVNLEVREQEIVSLIGPNG---AGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVI   98 (255)
T ss_pred             EeeeeEEcCCeEEEEECCCC---CCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHH
Confidence            78888888999999997522   45554432       23344333333332211    234588999999999999999


Q ss_pred             HHHHHhHH----------hcCC-----ChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEE
Q psy7365         391 EHLEFYSR----------VRNL-----PSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLD  455 (601)
Q Consensus       391 E~L~~~~~----------~~g~-----~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLD  455 (601)
                      ||+.+...          +++.     ...+..+.+.++++.+++.+..++++.+||||||||++||+||+.+|++||||
T Consensus        99 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD  178 (255)
T PRK11300         99 ENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLD  178 (255)
T ss_pred             HHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            99987432          1110     11123356788999999998899999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHH
Q psy7365         456 EPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  518 (601)
Q Consensus       456 EPTsGLD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~  518 (601)
                      |||+|||+.+++.++++|.+++++ |+|||++||+++++..+||++++|++|+++..|+++++.
T Consensus       179 EPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~  242 (255)
T PRK11300        179 EPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIR  242 (255)
T ss_pred             CCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHHh
Confidence            999999999999999999999775 899999999999999999999999999999999998874

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2e-29  Score=257.51  Aligned_cols=193  Identities=19%  Similarity=0.261  Sum_probs=155.5

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccccc------------ccccccccccccCC-----cccccccccCCCCcccC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN------------SFARGYYLSLDMKS-----APQKSYIGYCPQFDALN  384 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~------------~~g~g~~igld~~~-----~~~~~~ig~v~Q~~~l~  384 (601)
                      +++++-..-++.+++++...   .|++++++.            ..|+.++.+.+...     ...++.+||+||++.++
T Consensus        29 ~~vs~~i~~Ge~~~i~G~nG---sGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~  105 (258)
T PRK14268         29 KNVSMQIPKNSVTALIGPSG---CGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPF  105 (258)
T ss_pred             eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccC
Confidence            88888888999999997422   444443321            23333333333221     12356799999999888


Q ss_pred             CCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCC----cccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCC
Q psy7365         385 DRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG  460 (601)
Q Consensus       385 ~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~----~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsG  460 (601)
                      + +|++||+.+....++.+.....+++.++++.+++.    +..++++.+||||||||++||+||+.+|+++||||||+|
T Consensus       106 ~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~  184 (258)
T PRK14268        106 P-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSA  184 (258)
T ss_pred             c-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence            7 89999998865555554444455688899999983    456889999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         461 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       461 LD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ||+.++..++++|+++.+ |+|||++|||++++..+|||+++|++|+++..|+++++..
T Consensus       185 LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  242 (258)
T PRK14268        185 LDPISTARIEDLIMNLKK-DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH  242 (258)
T ss_pred             cCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            999999999999999864 7999999999999999999999999999999999998854

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.96  E-value=1.1e-29  Score=251.77  Aligned_cols=185  Identities=21%  Similarity=0.343  Sum_probs=146.8

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcccccccccCCCCcccC--CCCCHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAPQKSYIGYCPQFDALN--DRLTPREH  392 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~~~~~ig~v~Q~~~l~--~~lTv~E~  392 (601)
                      +++++...-++.+++++...   .|++++++       +..|..++.+.+..  ..++.++|+||++.++  +.+|++||
T Consensus        16 ~~isl~i~~Ge~~~l~G~nG---sGKSTLl~~l~G~~~p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~e~   90 (213)
T cd03235          16 EDVSFEVKPGEFLAIVGPNG---AGKSTLLKAILGLLKPTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISVRDV   90 (213)
T ss_pred             ecceeEEcCCCEEEEECCCC---CCHHHHHHHHcCCCCCCCCEEEECCccHH--HHHhheEEeccccccccCCCCcHHHH
Confidence            89999999999999997522   45555433       22333333333221  2356799999998763  34799999


Q ss_pred             HHHhHHhcC----CChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHH
Q psy7365         393 LEFYSRVRN----LPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRF  468 (601)
Q Consensus       393 L~~~~~~~g----~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~  468 (601)
                      +.+....+.    .......+++.++++.+++.+..++++.+||||||||++||+||+.+|++|||||||+|||+.+++.
T Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~  170 (213)
T cd03235          91 VLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQED  170 (213)
T ss_pred             HHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            987533211    1223345678899999999988899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEec
Q psy7365         469 LWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  512 (601)
Q Consensus       469 i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G  512 (601)
                      +++.|++++++|+|||++|||++++..+|||+++|++| +++.|
T Consensus       171 l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g  213 (213)
T cd03235         171 IYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG  213 (213)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence            99999999778999999999999999999999999886 55543

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.96  E-value=1.9e-29  Score=254.29  Aligned_cols=195  Identities=27%  Similarity=0.389  Sum_probs=161.7

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCC-cccccccccCCCCcccCCCCCHHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKS-APQKSYIGYCPQFDALNDRLTPREHL  393 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~-~~~~~~ig~v~Q~~~l~~~lTv~E~L  393 (601)
                      +++++...-++.+++++...   .|+++++       ++..|..++.+.+... ...++.++|+||++.+++.+|+.||+
T Consensus        16 ~~is~~i~~Ge~~~i~G~nG---~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l   92 (235)
T cd03299          16 KNVSLEVERGDYFVILGPTG---SGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNI   92 (235)
T ss_pred             eeeEEEEcCCcEEEEECCCC---CCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHH
Confidence            88888888999999997522   4444433       2333444444444322 12356799999999999999999999


Q ss_pred             HHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHH
Q psy7365         394 EFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCI  473 (601)
Q Consensus       394 ~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL  473 (601)
                      .+.....+....+..+.+.++++.++|.+..++++.+||||||||++||+|++.+|++++|||||+|||+.+++.+++.|
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l  172 (235)
T cd03299          93 AYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREEL  172 (235)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHH
Confidence            87655555444455667889999999998899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         474 ERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       474 ~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      +++..+ |+|||++||+++++..+|||+++|++|++++.|+++++..
T Consensus       173 ~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  219 (235)
T cd03299         173 KKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK  219 (235)
T ss_pred             HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence            998765 9999999999999999999999999999999999887754

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.96  E-value=6.1e-30  Score=313.33  Aligned_cols=205  Identities=19%  Similarity=0.299  Sum_probs=160.7

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCC----------------
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPV----------------  107 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~----------------  107 (601)
                      +.++||++.|... .+.++|+|+||++++      +|||||  ||||+      .++|.|++.|                
T Consensus      1166 I~f~nVsF~Y~~~-~~~~vL~~lsl~i~~G~~vAIVG~SGs--GKSTl------~~LL~r~ydp~~~~~~~~~~~~~~~~ 1236 (1466)
T PTZ00265       1166 IEIMDVNFRYISR-PNVPIYKDLTFSCDSKKTTAIVGETGS--GKSTV------MSLLMRFYDLKNDHHIVFKNEHTNDM 1236 (1466)
T ss_pred             EEEEEEEEECCCC-CCCccccCeeEEEcCCCEEEEECCCCC--CHHHH------HHHHHHhCCCcccccccccccccccc
Confidence            5599999997532 135799999999998      999999  56654      5799999998                


Q ss_pred             --------------------------------------CeeEEEEccccCCC-chHHhcccEEEEccCCCCCCCCCHHHH
Q psy7365         108 --------------------------------------SSGTAKIYDHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEH  148 (601)
Q Consensus       108 --------------------------------------~~G~v~~~g~~~~~-~~~~~~~~ig~v~Q~~~~~~~~tv~e~  148 (601)
                                                            ++|+|++||.++.. +...+|+.+|||||+|.+| +.|++||
T Consensus      1237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreN 1315 (1466)
T PTZ00265       1237 TNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYEN 1315 (1466)
T ss_pred             ccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHH
Confidence                                                  69999999999975 5567899999999999998 6899999


Q ss_pred             HHHhHhhcCCChHHHHHHHHHHHHHcCC-----------CcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhh
Q psy7365         149 MWFYSQLKQVPKDLAQLEISNMIGDLGI-----------PHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAA  217 (601)
Q Consensus       149 l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~  217 (601)
                      |.|+..  ..+.++    +.++++..++           .-........||||||||++|||||+.|             
T Consensus      1316 I~~g~~--~at~ee----I~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~------------- 1376 (1466)
T PTZ00265       1316 IKFGKE--DATRED----VKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLRE------------- 1376 (1466)
T ss_pred             HhcCCC--CCCHHH----HHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcC-------------
Confidence            998743  233333    4444444443           3333445567999999999866554333             


Q ss_pred             hhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHH
Q psy7365         218 NNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRS  297 (601)
Q Consensus       218 ~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~  297 (601)
                                                                                  |++||||||||+||+.+.+.
T Consensus      1377 ------------------------------------------------------------p~ILLLDEaTSaLD~~sE~~ 1396 (1466)
T PTZ00265       1377 ------------------------------------------------------------PKILLLDEATSSLDSNSEKL 1396 (1466)
T ss_pred             ------------------------------------------------------------CCEEEEeCcccccCHHHHHH
Confidence                                                                        48999999999999999999


Q ss_pred             HHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecC----Cccc-cccCc
Q psy7365         298 IWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA----GKLQ-CCGSS  348 (601)
Q Consensus       298 l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~----GkIv-~~G~~  348 (601)
                      +.+.|.++.    ..+++|+|+++|+++.+. .||+|++|++    |+++ ..|+.
T Consensus      1397 I~~~L~~~~----~~~~~TvIiIaHRlsti~-~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265       1397 IEKTIVDIK----DKADKTIITIAHRIASIK-RSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred             HHHHHHHHh----ccCCCEEEEEechHHHHH-hCCEEEEEeCCCCCCCEEEEecCH
Confidence            999998862    125899999999997765 6999999998    8854 56653

>PLN03140 ABC transporter G family member; Provisional

Probab=99.96  E-value=1.8e-29  Score=308.30  Aligned_cols=210  Identities=21%  Similarity=0.285  Sum_probs=172.0

Q ss_pred             hhcccccccccCC---------CccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCC--CeeEEE
Q psy7365          51 LFESLSENRDKLG---------IDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPV--SSGTAK  113 (601)
Q Consensus        51 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~--~~G~v~  113 (601)
                      .++||++..+.+.         ....+|+|+|+++.+      +|||||  |||||      .++|+|..++  .+|+|.
T Consensus       869 ~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGa--GKTTL------L~~LaG~~~~g~~~G~I~  940 (1470)
T PLN03140        869 SFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGA--GKTTL------MDVLAGRKTGGYIEGDIR  940 (1470)
T ss_pred             EEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCC--CHHHH------HHHHcCCCCCCcccceEE
Confidence            4888888765332         234699999999999      999999  57665      6799999874  799999


Q ss_pred             EccccCCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhc---CCChHHHHHHHHHHHHHcCCCcccCCcc-----c
Q psy7365         114 IYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK---QVPKDLAQLEISNMIGDLGIPHKRTSLA-----N  185 (601)
Q Consensus       114 ~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~  185 (601)
                      ++|.+...  ...++.+|||+|++.+++.+||+||+.|.+..+   ..+.++..++++++++.+||.+..++.+     .
T Consensus       941 inG~~~~~--~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~ 1018 (1470)
T PLN03140        941 ISGFPKKQ--ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVT 1018 (1470)
T ss_pred             ECCccCCh--HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCC
Confidence            99988642  234667999999999999999999999987543   2344555667899999999999888886     5


Q ss_pred             cCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHH
Q psy7365         186 TLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILV  265 (601)
Q Consensus       186 ~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  265 (601)
                      .|||||||||+||++                                      ++.+                       
T Consensus      1019 ~LSgGerkRvsIa~a--------------------------------------L~~~----------------------- 1037 (1470)
T PLN03140       1019 GLSTEQRKRLTIAVE--------------------------------------LVAN----------------------- 1037 (1470)
T ss_pred             CcCHHHHHHHHHHHH--------------------------------------HhhC-----------------------
Confidence            899999999986443                                      2233                       


Q ss_pred             HHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchh-HHHhcCCEEEEecC-Cccc
Q psy7365         266 AVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMD-EADLLGDRIAIIAA-GKLQ  343 (601)
Q Consensus       266 a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~-~~~~l~Drv~vL~~-GkIv  343 (601)
                                  |++|+|||||+|||+.++..+++.|+++.     ..|+|||+++|+.+ ++...+|++++|.+ |+++
T Consensus      1038 ------------P~lL~LDEPTsgLD~~~a~~v~~~L~~l~-----~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v 1100 (1470)
T PLN03140       1038 ------------PSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1100 (1470)
T ss_pred             ------------CCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEE
Confidence                        58999999999999999999999999983     35899999999998 57789999999986 8888


Q ss_pred             cccCc
Q psy7365         344 CCGSS  348 (601)
Q Consensus       344 ~~G~~  348 (601)
                      ..|..
T Consensus      1101 ~~G~~ 1105 (1470)
T PLN03140       1101 YSGPL 1105 (1470)
T ss_pred             EECCc
Confidence            77753

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.8e-29  Score=260.93  Aligned_cols=194  Identities=20%  Similarity=0.265  Sum_probs=157.4

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-------cccccccccCCCCc--ccCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-------APQKSYIGYCPQFD--ALND  385 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-------~~~~~~ig~v~Q~~--~l~~  385 (601)
                      +++++...-++.+++++...   .|++++++       +..|+.++.+.+...       ...++.++|+||++  .+++
T Consensus        24 ~~is~~i~~Ge~~~l~G~nG---sGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~  100 (280)
T PRK13649         24 FDVNLTIEDGSYTAFIGHTG---SGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE  100 (280)
T ss_pred             eeeEEEEcCCcEEEEECCCC---CCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc
Confidence            88898888999999997522   45554432       233444333433321       12356799999997  3454


Q ss_pred             CCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCC-cccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHH
Q psy7365         386 RLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG  464 (601)
Q Consensus       386 ~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~-~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~  464 (601)
                       .|++||+.+....++...++..+.++++++.++|. ...++++.+||||||||++||+||+.+|++|||||||+|||+.
T Consensus       101 -~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~  179 (280)
T PRK13649        101 -ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPK  179 (280)
T ss_pred             -ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence             69999998765555554445556788999999997 4679999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         465 ARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       465 ~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      +++.+++.|++++++|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus       180 ~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  234 (280)
T PRK13649        180 GRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ  234 (280)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            9999999999997779999999999999999999999999999999999988754

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.96  E-value=1.1e-29  Score=251.47  Aligned_cols=187  Identities=21%  Similarity=0.307  Sum_probs=149.2

Q ss_pred             chhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-cccccccccCCCCcccCCCCCHHHHHH
Q psy7365         323 YMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-APQKSYIGYCPQFDALNDRLTPREHLE  394 (601)
Q Consensus       323 dl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-~~~~~~ig~v~Q~~~l~~~lTv~E~L~  394 (601)
                      ++++...-++++++++...   .|++++++       +..|+.++.+.+... ...++.+||+||++.+++.+|++||+.
T Consensus        16 ~is~~i~~Ge~~~l~G~nG---sGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~   92 (211)
T cd03298          16 HFDLTFAQGEITAIVGPSG---SGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG   92 (211)
T ss_pred             ceEEEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence            7778888899999997522   45554432       233444333433321 123467999999999999999999998


Q ss_pred             HhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q psy7365         395 FYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE  474 (601)
Q Consensus       395 ~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~  474 (601)
                      +.........+..++++.++++.+++.+..++++.+||||||||++||+||+.+|+++||||||+|||+.++..++++|+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~  172 (211)
T cd03298          93 LGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVL  172 (211)
T ss_pred             cccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence            75321111122345578899999999988899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEec
Q psy7365         475 RAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  512 (601)
Q Consensus       475 ~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G  512 (601)
                      +++++ |+|||++||+++++..+|||+++|++|+++..|
T Consensus       173 ~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~  211 (211)
T cd03298         173 DLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG  211 (211)
T ss_pred             HHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence            98754 899999999999999999999999999998654

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.7e-29  Score=261.31  Aligned_cols=195  Identities=24%  Similarity=0.303  Sum_probs=159.7

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC----cccccccccCCCCcc-cCCCCCH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS----APQKSYIGYCPQFDA-LNDRLTP  389 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~----~~~~~~ig~v~Q~~~-l~~~lTv  389 (601)
                      +++++...-++.+++++...   .|++++++       +..|..++.+.+...    ...++.+||+||++. .+...|+
T Consensus        27 ~~vs~~i~~Ge~~~l~G~nG---sGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v  103 (280)
T PRK13633         27 DDVNLEVKKGEFLVILGRNG---SGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIV  103 (280)
T ss_pred             eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccH
Confidence            88999888999999997522   45554432       233444444433322    123567999999974 2334699


Q ss_pred             HHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHH
Q psy7365         390 REHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFL  469 (601)
Q Consensus       390 ~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i  469 (601)
                      .+|+.|.....+.+..+.+++++++++.++|.+..++++.+||||||||++||+||+.+|+++||||||+|||+.++..+
T Consensus       104 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l  183 (280)
T PRK13633        104 EEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREV  183 (280)
T ss_pred             HHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence            99998876555555555667789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         470 WTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       470 ~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      ++.|++++++ |.|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus       184 ~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~~  234 (280)
T PRK13633        184 VNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFKE  234 (280)
T ss_pred             HHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHHHhcC
Confidence            9999999764 9999999999999986 999999999999999999998654

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.96  E-value=2.6e-29  Score=256.34  Aligned_cols=199  Identities=21%  Similarity=0.326  Sum_probs=159.3

Q ss_pred             CcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC---cccccccccCCCCccc
Q psy7365         314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS---APQKSYIGYCPQFDAL  383 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~---~~~~~~ig~v~Q~~~l  383 (601)
                      ++.++   +++++...-++.+++++...   .|++++++       +..|+.++.+.+...   ...++.++|+||++.+
T Consensus        13 ~~~il---~~is~~i~~Ge~~~i~G~nG---sGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~   86 (256)
T TIGR03873        13 GRLIV---DGVDVTAPPGSLTGLLGPNG---SGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDT   86 (256)
T ss_pred             CEEEE---eeeeEEEcCCcEEEEECCCC---CCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCcc
Confidence            44444   89999999999999997522   45554432       233433333333222   1224569999999888


Q ss_pred             CCCCCHHHHHHHhHH----hcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCC
Q psy7365         384 NDRLTPREHLEFYSR----VRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTS  459 (601)
Q Consensus       384 ~~~lTv~E~L~~~~~----~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTs  459 (601)
                      ++.+|+.||+.+...    .++....+..+++.++++.+++.+..++++.+||||||||++||+|++.+|+++||||||+
T Consensus        87 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~  166 (256)
T TIGR03873        87 AVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTN  166 (256)
T ss_pred             CCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccc
Confidence            888999999987421    1122223334568899999999988999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHH
Q psy7365         460 GMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  518 (601)
Q Consensus       460 GLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~  518 (601)
                      |||+.++..++++|++++++|.|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus       167 ~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  225 (256)
T TIGR03873       167 HLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL  225 (256)
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence            99999999999999999877999999999999999999999999999999999988764

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.96  E-value=2e-29  Score=234.09  Aligned_cols=193  Identities=22%  Similarity=0.297  Sum_probs=161.7

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccccc-------ccccccc--cccccCC-------cccccccccCCCCcccCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN-------SFARGYY--LSLDMKS-------APQKSYIGYCPQFDALND  385 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~-------~~g~g~~--igld~~~-------~~~~~~ig~v~Q~~~l~~  385 (601)
                      ||+.+-..-+|.+++++...   .|++.+++.       ..+.-.+  ..+|...       ...|+.+|+|||...+||
T Consensus        19 fdi~l~~~~getlvllgpsg---agkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwp   95 (242)
T COG4161          19 FDITLDCPEGETLVLLGPSG---AGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWP   95 (242)
T ss_pred             eeeeecCCCCCEEEEECCCC---CchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCc
Confidence            78888888999999997522   333333221       1111000  1112111       124788999999999999


Q ss_pred             CCCHHHHHHH-hHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHH
Q psy7365         386 RLTPREHLEF-YSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG  464 (601)
Q Consensus       386 ~lTv~E~L~~-~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~  464 (601)
                      ++||.||+.- ..+..|+++++++.++.++|+++.|.+++|+.|-.|||||+|||+|||||+.+|++|++||||+.|||+
T Consensus        96 hltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpe  175 (242)
T COG4161          96 HLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPE  175 (242)
T ss_pred             hhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHH
Confidence            9999999754 567789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHH
Q psy7365         465 ARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  517 (601)
Q Consensus       465 ~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L  517 (601)
                      -..++.++|+++...|.|-+++||..+.+...+.||+.|++|+|+..|+.+..
T Consensus       176 itaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f  228 (242)
T COG4161         176 ITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF  228 (242)
T ss_pred             HHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence            99999999999999999999999999999999999999999999999997643

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2.2e-29  Score=258.35  Aligned_cols=200  Identities=23%  Similarity=0.299  Sum_probs=159.4

Q ss_pred             CCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccC---CcccccccccCCCCcc
Q psy7365         313 SGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMK---SAPQKSYIGYCPQFDA  382 (601)
Q Consensus       313 ~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~---~~~~~~~ig~v~Q~~~  382 (601)
                      .+++++   +++++...-++.+++++...   .|++++++       +..|..++.+.+..   ....++.++|+||++.
T Consensus        22 ~~~~il---~~vs~~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~   95 (265)
T PRK10575         22 PGRTLL---HPLSLTFPAGKVTGLIGHNG---SGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLP   95 (265)
T ss_pred             CCEEEE---eeeeeEEcCCCEEEEECCCC---CCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCC
Confidence            345554   89999999999999997522   45554432       22333333333321   1123467999999988


Q ss_pred             cCCCCCHHHHHHHhHH-hcC---CChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCC
Q psy7365         383 LNDRLTPREHLEFYSR-VRN---LPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPT  458 (601)
Q Consensus       383 l~~~lTv~E~L~~~~~-~~g---~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPT  458 (601)
                      +++.+|+.||+.+... ..+   .......+++.++++.+++.+..++++.+||||||||++||+||+.+|++|||||||
T Consensus        96 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt  175 (265)
T PRK10575         96 AAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPT  175 (265)
T ss_pred             CCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            8888999999987431 111   112233456889999999988889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHH
Q psy7365         459 SGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  518 (601)
Q Consensus       459 sGLD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~  518 (601)
                      +|||+.+++.++++|+++.++ |.|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus       176 ~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~  236 (265)
T PRK10575        176 SALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM  236 (265)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence            999999999999999999765 899999999999999999999999999999999988764

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.96  E-value=2.4e-29  Score=250.61  Aligned_cols=184  Identities=20%  Similarity=0.300  Sum_probs=148.5

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcc------c-ccccccCCCCcccCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAP------Q-KSYIGYCPQFDALNDRL  387 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~------~-~~~ig~v~Q~~~l~~~l  387 (601)
                      +++++...-++.+++++...   .|++++++       +..|..++.+.+.....      . ++.++|+||++.+++.+
T Consensus        22 ~~isl~i~~G~~~~i~G~nG---sGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~   98 (221)
T TIGR02211        22 KGVSLSIGKGEIVAIVGSSG---SGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDF   98 (221)
T ss_pred             eeeEEEEcCCcEEEEECCCC---CCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCC
Confidence            88899999999999997522   45555443       22333333333322111      1 25699999999999999


Q ss_pred             CHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHH
Q psy7365         388 TPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARR  467 (601)
Q Consensus       388 Tv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~  467 (601)
                      |++||+.+....++....+..+++.++++.+++.+..++++.+||||||||++||+||+.+|++|||||||+|||+.+++
T Consensus        99 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~  178 (221)
T TIGR02211        99 TALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAK  178 (221)
T ss_pred             cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHH
Confidence            99999988654444443344567889999999998889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEE
Q psy7365         468 FLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFT  509 (601)
Q Consensus       468 ~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv  509 (601)
                      .++++|++++++ |+|||++|||+++++. ||++++|++|+++
T Consensus       179 ~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~  220 (221)
T TIGR02211       179 IIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF  220 (221)
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence            999999999764 8999999999999975 8999999999975

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.96  E-value=3.3e-29  Score=250.23  Aligned_cols=187  Identities=26%  Similarity=0.364  Sum_probs=154.2

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcccccccccCCCCcccCCCCCHHHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLE  394 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~~~~~ig~v~Q~~~l~~~lTv~E~L~  394 (601)
                      +++++...-++.+++++...   .|++++++       +..|..++.+.+.... ..+.++|+||++.+++.+|++||+.
T Consensus        17 ~~vs~~i~~Ge~~~i~G~nG---sGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~-~~~~~~~~~q~~~~~~~~t~~~~~~   92 (223)
T TIGR03740        17 NNISLTVPKNSVYGLLGPNG---AGKSTLLKMITGILRPTSGEIIFDGHPWTRK-DLHKIGSLIESPPLYENLTARENLK   92 (223)
T ss_pred             eeeEEEEcCCcEEEEECCCC---CCHHHHHHHHhCCCCCCceEEEECCEecccc-ccccEEEEcCCCCccccCCHHHHHH
Confidence            88888888999999997522   45554432       2233333333322211 2357999999999899899999998


Q ss_pred             HhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q psy7365         395 FYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE  474 (601)
Q Consensus       395 ~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~  474 (601)
                      ++...++.+    .+++.++++.+++.+..++++.+||||||||++||+|++.+|++++|||||+|||+.+++.++++|+
T Consensus        93 ~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~  168 (223)
T TIGR03740        93 VHTTLLGLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIR  168 (223)
T ss_pred             HHHHHcCCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHH
Confidence            766554432    2457889999999988999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHH
Q psy7365         475 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATH  516 (601)
Q Consensus       475 ~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~  516 (601)
                      +++++|.|||++|||++++..+|||+++|++|+++..|++.+
T Consensus       169 ~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~  210 (223)
T TIGR03740       169 SFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK  210 (223)
T ss_pred             HHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence            997779999999999999999999999999999999998753

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.96  E-value=4e-29  Score=254.31  Aligned_cols=195  Identities=19%  Similarity=0.221  Sum_probs=158.7

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC----------------cccccccccCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS----------------APQKSYIGYCP  378 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~----------------~~~~~~ig~v~  378 (601)
                      +++++...-++.+++++...   .|++++++       +..|...+.+.+...                ...++.++|+|
T Consensus        17 ~~vs~~i~~Ge~~~i~G~nG---sGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~   93 (252)
T TIGR03005        17 DGLNFSVAAGEKVALIGPSG---SGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVF   93 (252)
T ss_pred             eeeeEEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEe
Confidence            88999999999999997522   45544432       223333333322211                12356799999


Q ss_pred             CCcccCCCCCHHHHHHHhHH-hcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECC
Q psy7365         379 QFDALNDRLTPREHLEFYSR-VRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEP  457 (601)
Q Consensus       379 Q~~~l~~~lTv~E~L~~~~~-~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEP  457 (601)
                      |++.+++.+|+.||+.+... ..+.......+.+.++++.+++.+..++++.+||||||||++||+||+.+|+++|||||
T Consensus        94 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  173 (252)
T TIGR03005        94 QSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEV  173 (252)
T ss_pred             cCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            99999999999999987432 23344444556788999999999888999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         458 TSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       458 TsGLD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      |+|||+.++..++++|+++.++ |+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus       174 ~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  236 (252)
T TIGR03005       174 TSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFR  236 (252)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence            9999999999999999998765 8999999999999999999999999999999999988754

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.96  E-value=3.9e-29  Score=252.30  Aligned_cols=201  Identities=23%  Similarity=0.357  Sum_probs=163.6

Q ss_pred             CCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc-ccccccccCCCCcccC
Q psy7365         313 SGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA-PQKSYIGYCPQFDALN  384 (601)
Q Consensus       313 ~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~-~~~~~ig~v~Q~~~l~  384 (601)
                      .+++++   +++++...-++.+++++...   .|++++++       +..|+..+.+.+.... ..++.++|+||++.+|
T Consensus        11 ~~~~il---~~is~~i~~Ge~~~l~G~nG---sGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~   84 (237)
T TIGR00968        11 GSFQAL---DDVNLEVPTGSLVALLGPSG---SGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALF   84 (237)
T ss_pred             CCeeee---eeEEEEEcCCCEEEEECCCC---CCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhc
Confidence            345555   88898889999999997522   45554432       2233333333333221 2346799999999999


Q ss_pred             CCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHH
Q psy7365         385 DRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG  464 (601)
Q Consensus       385 ~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~  464 (601)
                      +.+|+.||+.+....++.......+.+.++++.+++.+..++++.+||+||+||++||+||+.+|++++|||||+|||+.
T Consensus        85 ~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~  164 (237)
T TIGR00968        85 KHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAK  164 (237)
T ss_pred             cCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence            99999999987655554444444567889999999998899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         465 ARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       465 ~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      +++.++++|++++++ |+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus       165 ~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~  220 (237)
T TIGR00968       165 VRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD  220 (237)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence            999999999998776 8999999999999999999999999999999999998864

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.96  E-value=2.7e-29  Score=265.64  Aligned_cols=198  Identities=18%  Similarity=0.222  Sum_probs=159.9

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cc---cccccccccccCCcc------c-ccccccCCCCc--c
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NS---FARGYYLSLDMKSAP------Q-KSYIGYCPQFD--A  382 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~---~g~g~~igld~~~~~------~-~~~ig~v~Q~~--~  382 (601)
                      +++++...-++.+++++...   +|++++++       +.   .|+.++.+.++....      . ++.|+|+||++  .
T Consensus        33 ~~vsl~i~~Ge~~~ivG~sG---sGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~  109 (330)
T PRK09473         33 NDLNFSLRAGETLGIVGESG---SGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTS  109 (330)
T ss_pred             eeeEEEEcCCCEEEEECCCC---chHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhh
Confidence            88999999999999997522   44444321       21   344444444432211      1 24799999998  6


Q ss_pred             cCCCCCHHHHHHHhHHhc-CCChhHHHHHHHHHHHHcCCCc---ccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCC
Q psy7365         383 LNDRLTPREHLEFYSRVR-NLPSVLLNTIVNESLNKFALGH---YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPT  458 (601)
Q Consensus       383 l~~~lTv~E~L~~~~~~~-g~~~~~~~~~~~~lLe~~~L~~---~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPT  458 (601)
                      +++.+|+.+++.+....+ +....+..+++.++|+.++|.+   ..++.+.+||||||||++||+||+.+|++||+||||
T Consensus       110 l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPt  189 (330)
T PRK09473        110 LNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPT  189 (330)
T ss_pred             cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            889999999987755444 3445555678899999999974   347799999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHhC
Q psy7365         459 SGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYG  522 (601)
Q Consensus       459 sGLD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~~  522 (601)
                      +|||+.++..++++|++++++ |.|+|++|||++++..+||||++|++|+|+..|+++++.+...
T Consensus       190 s~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~~~p~  254 (330)
T PRK09473        190 TALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPS  254 (330)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCC
Confidence            999999999999999999765 9999999999999999999999999999999999999876433

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.96  E-value=3.6e-29  Score=250.13  Aligned_cols=188  Identities=20%  Similarity=0.252  Sum_probs=148.7

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC------cccccccccCCCCc--ccCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS------APQKSYIGYCPQFD--ALNDR  386 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~------~~~~~~ig~v~Q~~--~l~~~  386 (601)
                      +++++...-++.+++++...   .|++++++       +..|+.++.+.++..      ...++.+||+||++  .+++.
T Consensus        22 ~~vs~~i~~Ge~~~i~G~nG---sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~   98 (228)
T cd03257          22 DDVSFSIKKGETLGLVGESG---SGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPR   98 (228)
T ss_pred             cCceeEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCc
Confidence            88999999999999997522   45554432       233444444433322      12356799999998  46778


Q ss_pred             CCHHHHHHHhHHhcCCChh-HHHHH-HHHHHHHcCCC-cccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCH
Q psy7365         387 LTPREHLEFYSRVRNLPSV-LLNTI-VNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP  463 (601)
Q Consensus       387 lTv~E~L~~~~~~~g~~~~-~~~~~-~~~lLe~~~L~-~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~  463 (601)
                      +|++||+.+....++.... ...+. +.++++.+++. ...++++.+||||||||++||+||+.+|++|||||||+|||+
T Consensus        99 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~  178 (228)
T cd03257          99 MTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDV  178 (228)
T ss_pred             CCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCH
Confidence            9999999876544432221 22222 35889999995 678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEec
Q psy7365         464 GARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  512 (601)
Q Consensus       464 ~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G  512 (601)
                      .+++.+++.|++++++ |+|||++||+++++..+|||+++|++|+++..|
T Consensus       179 ~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g  228 (228)
T cd03257         179 SVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG  228 (228)
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence            9999999999999776 899999999999999999999999999998754

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2.7e-29  Score=252.46  Aligned_cols=194  Identities=20%  Similarity=0.309  Sum_probs=154.5

Q ss_pred             chhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc-ccccccccCCCCcccCCCCCHHHHHH
Q psy7365         323 YMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA-PQKSYIGYCPQFDALNDRLTPREHLE  394 (601)
Q Consensus       323 dl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~-~~~~~ig~v~Q~~~l~~~lTv~E~L~  394 (601)
                      ++++...-++.+++++...   +|++++++       +..|+..+.+.+.... ..++.++|+||++.+++.+|+.||+.
T Consensus        17 ~is~~i~~Ge~~~l~G~nG---sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~   93 (232)
T PRK10771         17 RFDLTVERGERVAILGPSG---AGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG   93 (232)
T ss_pred             eeEEEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence            6677777889999987522   45555433       2223333333332211 12457999999999999999999997


Q ss_pred             HhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q psy7365         395 FYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE  474 (601)
Q Consensus       395 ~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~  474 (601)
                      +.........+...+++.++++.+++.+..++++.+||||||||++||+|++.+|+++||||||+|||+.+++.++++|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~  173 (232)
T PRK10771         94 LGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVS  173 (232)
T ss_pred             cccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            64321101122345668899999999988999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         475 RAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       475 ~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ++.++ |+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus       174 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~  219 (232)
T PRK10771        174 QVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS  219 (232)
T ss_pred             HHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            98764 8999999999999999999999999999999999988764

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2.5e-29  Score=256.34  Aligned_cols=199  Identities=22%  Similarity=0.371  Sum_probs=158.3

Q ss_pred             CcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC---cccccccccCCCCccc
Q psy7365         314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS---APQKSYIGYCPQFDAL  383 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~---~~~~~~ig~v~Q~~~l  383 (601)
                      +++++   +++++...-++.+++++...   .|++++++       +..|...+.+.+...   ...++.++|+||++.+
T Consensus        14 ~~~il---~~is~~i~~Ge~~~l~G~nG---sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~   87 (255)
T PRK11231         14 TKRIL---NDLSLSLPTGKITALIGPNG---CGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLT   87 (255)
T ss_pred             CEEEE---eeeeeEEcCCcEEEEECCCC---CCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCC
Confidence            44544   88898889999999997522   45554432       222333333322211   1234569999999988


Q ss_pred             CCCCCHHHHHHHhHH----hcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCC
Q psy7365         384 NDRLTPREHLEFYSR----VRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTS  459 (601)
Q Consensus       384 ~~~lTv~E~L~~~~~----~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTs  459 (601)
                      ++.+|+.||+.+...    .++.......+++.++++.+++.+..++++.+||||||||++||+|++.+|++|||||||+
T Consensus        88 ~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~  167 (255)
T PRK11231         88 PEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTT  167 (255)
T ss_pred             CCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            888999999987421    1222223344568889999999988999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHH
Q psy7365         460 GMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  518 (601)
Q Consensus       460 GLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~  518 (601)
                      |||+.+++.++++|+++.++|+|||++||+++++.++|||+++|++|+++..|+++++.
T Consensus       168 ~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  226 (255)
T PRK11231        168 YLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM  226 (255)
T ss_pred             cCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence            99999999999999998777999999999999999999999999999999999988764

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.96  E-value=3.6e-29  Score=250.97  Aligned_cols=191  Identities=24%  Similarity=0.304  Sum_probs=154.4

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc----ccccccccCCCCcccCCCCCHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA----PQKSYIGYCPQFDALNDRLTPR  390 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~----~~~~~ig~v~Q~~~l~~~lTv~  390 (601)
                      +++++...-++.+++++...   +|++++++       +..|+.++.+.+....    ..++.++|+||++.+++.+|+.
T Consensus        17 ~~vs~~i~~Ge~~~l~G~nG---sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   93 (230)
T TIGR03410        17 RGVSLEVPKGEVTCVLGRNG---VGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVE   93 (230)
T ss_pred             cceeeEECCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHH
Confidence            88999999999999997522   45555432       2334433333332211    1245799999999999999999


Q ss_pred             HHHHHhHHhcCCChhHHHHHHHHHHHHcC-CCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHH
Q psy7365         391 EHLEFYSRVRNLPSVLLNTIVNESLNKFA-LGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFL  469 (601)
Q Consensus       391 E~L~~~~~~~g~~~~~~~~~~~~lLe~~~-L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i  469 (601)
                      ||+.+....++..   ..+...++++.++ +.+..++++.+||||||||++||+||+.+|+++||||||+|||+.+++.+
T Consensus        94 ~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l  170 (230)
T TIGR03410        94 ENLLTGLAALPRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDI  170 (230)
T ss_pred             HHHHHHHHhcCcc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence            9998765444322   1234577788887 57778999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHH
Q psy7365         470 WTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  518 (601)
Q Consensus       470 ~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~  518 (601)
                      +++|.+++++ |+|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus       171 ~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~  220 (230)
T TIGR03410       171 GRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD  220 (230)
T ss_pred             HHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence            9999998775 899999999999999999999999999999999998873

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3.7e-29  Score=254.81  Aligned_cols=198  Identities=23%  Similarity=0.294  Sum_probs=157.5

Q ss_pred             CcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------c-----ccccccccccccCC-----ccccccccc
Q psy7365         314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------N-----SFARGYYLSLDMKS-----APQKSYIGY  376 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~-----~~g~g~~igld~~~-----~~~~~~ig~  376 (601)
                      ++.++   +++++...-++.+++++...   .|++++++       +     ..|+.++.+.+...     ...++.+||
T Consensus        19 ~~~il---~~vs~~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~   92 (254)
T PRK14273         19 DFKAL---NNINIKILKNSITALIGPSG---CGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGM   92 (254)
T ss_pred             Cceee---cceeeEEcCCCEEEEECCCC---CCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEE
Confidence            44444   89999999999999997522   45554332       1     12333333433211     123567999


Q ss_pred             CCCCcccCCCCCHHHHHHHhHHhcCC-ChhHHHHHHHHHHHHcCC----CcccccccCcCChHHHHHHHHHHHHhCCCCE
Q psy7365         377 CPQFDALNDRLTPREHLEFYSRVRNL-PSVLLNTIVNESLNKFAL----GHYSDREVRTLSGGNKRKLSTAIALLGNTPL  451 (601)
Q Consensus       377 v~Q~~~l~~~lTv~E~L~~~~~~~g~-~~~~~~~~~~~lLe~~~L----~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~l  451 (601)
                      +||++.+++ +|++||+.+....++. ......+.+.++++.+++    .+..++++.+||||||||++||+||+.+|++
T Consensus        93 v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l  171 (254)
T PRK14273         93 VFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNV  171 (254)
T ss_pred             Eeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            999988875 8999999886544443 223345678889999987    3457889999999999999999999999999


Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         452 IFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       452 LlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      |||||||+|||+.++..++++|++++ +++|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus       172 llLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  238 (254)
T PRK14273        172 ILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFF  238 (254)
T ss_pred             EEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            99999999999999999999999985 47999999999999999999999999999999999998864

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=4.5e-29  Score=253.47  Aligned_cols=194  Identities=18%  Similarity=0.191  Sum_probs=156.3

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccccc------------ccccccccccccCC---cccccccccCCCCcccCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN------------SFARGYYLSLDMKS---APQKSYIGYCPQFDALNDR  386 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~------------~~g~g~~igld~~~---~~~~~~ig~v~Q~~~l~~~  386 (601)
                      +++++...-++.+++++...   +|++++++.            ..|+.++.+.+...   ...++.+||+||++.+++.
T Consensus        20 ~~is~~i~~Ge~~~i~G~nG---sGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~   96 (250)
T PRK14247         20 DGVNLEIPDNTITALMGPSG---SGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPN   96 (250)
T ss_pred             ecceeEEcCCCEEEEECCCC---CCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCC
Confidence            88999989999999997422   455443321            13333333433321   1235679999999988889


Q ss_pred             CCHHHHHHHhHHhcCC--ChhHHHHHHHHHHHHcCCCc----ccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCC
Q psy7365         387 LTPREHLEFYSRVRNL--PSVLLNTIVNESLNKFALGH----YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG  460 (601)
Q Consensus       387 lTv~E~L~~~~~~~g~--~~~~~~~~~~~lLe~~~L~~----~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsG  460 (601)
                      +|+.||+.+.....+.  +..+..+.+.++++.++|.+    ..++++.+||||||||++||+||+.+|+++||||||+|
T Consensus        97 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~  176 (250)
T PRK14247         97 LSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTAN  176 (250)
T ss_pred             CcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence            9999999876543332  23344567889999999853    56889999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         461 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       461 LD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ||+.++..++++|+++.+ |+|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus       177 LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  234 (250)
T PRK14247        177 LDPENTAKIESLFLELKK-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFT  234 (250)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHc
Confidence            999999999999999854 8999999999999999999999999999999999988753

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.96  E-value=7.6e-29  Score=250.32  Aligned_cols=200  Identities=18%  Similarity=0.219  Sum_probs=157.0

Q ss_pred             CCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc---------cccccccccccccCCc---c-cccccccCCC
Q psy7365         313 SGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK---------NSFARGYYLSLDMKSA---P-QKSYIGYCPQ  379 (601)
Q Consensus       313 ~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk---------~~~g~g~~igld~~~~---~-~~~~ig~v~Q  379 (601)
                      .++.++   +++++...-++.+++++...   .|++++++         +..|..++.+.+....   . .+..++|+||
T Consensus        11 ~~~~~l---~~isl~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q   84 (243)
T TIGR01978        11 EDKEIL---KGVNLTVKKGEIHAIMGPNG---SGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQ   84 (243)
T ss_pred             CCEEEE---eccceEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeec
Confidence            344544   89999999999999997421   44444332         2233333333332211   1 1334899999


Q ss_pred             CcccCCCCCHHHHHHHhHHhcC-------CChhHHHHHHHHHHHHcCCC-cccccccC-cCChHHHHHHHHHHHHhCCCC
Q psy7365         380 FDALNDRLTPREHLEFYSRVRN-------LPSVLLNTIVNESLNKFALG-HYSDREVR-TLSGGNKRKLSTAIALLGNTP  450 (601)
Q Consensus       380 ~~~l~~~lTv~E~L~~~~~~~g-------~~~~~~~~~~~~lLe~~~L~-~~~~~~~~-~LSgGqkQRl~lA~AL~~~P~  450 (601)
                      ++.+++.+|+.|++.+......       ....+..+++.++++.++|. +..++++. +||||||||++||+||+.+|+
T Consensus        85 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~  164 (243)
T TIGR01978        85 YPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPK  164 (243)
T ss_pred             cccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCC
Confidence            9999999999999987543221       12223345688999999997 46788887 599999999999999999999


Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhh-CCEEEEEeCCEEEEecCHHHHH
Q psy7365         451 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEAL-CTKLTIMVNGQFTCLGSATHLK  518 (601)
Q Consensus       451 lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l-~drv~iL~~G~iv~~G~~~~L~  518 (601)
                      ++||||||+|||+.+++.++++|++++++|+|||++||+++++..+ |||+++|++|+++..|+++++.
T Consensus       165 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (243)
T TIGR01978       165 LAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAK  233 (243)
T ss_pred             EEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence            9999999999999999999999999987799999999999999998 8999999999999999998654

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.96  E-value=5.4e-29  Score=255.48  Aligned_cols=195  Identities=21%  Similarity=0.289  Sum_probs=157.5

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc------ccccccccCCCCc--ccCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA------PQKSYIGYCPQFD--ALNDR  386 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~------~~~~~ig~v~Q~~--~l~~~  386 (601)
                      +++++...-++.+++++...   .|++++++       +..|..++.+.+....      ..++.++|+||++  .+++.
T Consensus        28 ~~isl~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~  104 (265)
T TIGR02769        28 TNVSLSIEEGETVGLLGRSG---CGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPR  104 (265)
T ss_pred             eCceeEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCC
Confidence            89999999999999997522   45554432       2334443333333211      1245799999997  46678


Q ss_pred             CCHHHHHHHhHHh-cCCChhHHHHHHHHHHHHcCCC-cccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHH
Q psy7365         387 LTPREHLEFYSRV-RNLPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG  464 (601)
Q Consensus       387 lTv~E~L~~~~~~-~g~~~~~~~~~~~~lLe~~~L~-~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~  464 (601)
                      +|++||+.+.... .+.......+++.++++.+++. ...++++.+||||||||++||+||+++|++|||||||+|||+.
T Consensus       105 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~  184 (265)
T TIGR02769       105 MTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMV  184 (265)
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence            9999999765432 2333334456788999999996 6789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         465 ARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       465 ~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ++..++++|+++.++ |+|||++|||++++..+|||+++|++|+++..|+++++..
T Consensus       185 ~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  240 (265)
T TIGR02769       185 LQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS  240 (265)
T ss_pred             HHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence            999999999998765 8999999999999999999999999999999999998754

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.96  E-value=3.6e-29  Score=248.44  Aligned_cols=189  Identities=21%  Similarity=0.320  Sum_probs=151.2

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-cccccccccCCCCcccCCCCCHHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-APQKSYIGYCPQFDALNDRLTPREHL  393 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-~~~~~~ig~v~Q~~~l~~~lTv~E~L  393 (601)
                      +++++...-++.+++++...   .|++++++       +..|+.++.+.+... ...++.++|+||++.+++.+|+.||+
T Consensus        15 ~~~s~~i~~Ge~~~i~G~nG---sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~   91 (213)
T TIGR01277        15 MEFDLNVADGEIVAIMGPSG---AGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNI   91 (213)
T ss_pred             eeeEEEEeCCcEEEEECCCC---CCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHH
Confidence            57788888899999997422   45554433       233334333433321 12356799999999999999999999


Q ss_pred             HHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHH
Q psy7365         394 EFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCI  473 (601)
Q Consensus       394 ~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL  473 (601)
                      .+............++++.++++.+++.+..++++.+||||||||++||+|++.+|+++||||||+|||+.++..++++|
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l  171 (213)
T TIGR01277        92 GLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALV  171 (213)
T ss_pred             HhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence            86432211112233456788999999998899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecC
Q psy7365         474 ERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS  513 (601)
Q Consensus       474 ~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~  513 (601)
                      +++.++ |+|||++||+++++..+||++++|++|++++.|.
T Consensus       172 ~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       172 KQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             HHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence            998765 8999999999999999999999999999998874

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=6e-29  Score=253.01  Aligned_cols=199  Identities=19%  Similarity=0.240  Sum_probs=158.6

Q ss_pred             CcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------c-----ccccccccccccC-----Cccccccccc
Q psy7365         314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------N-----SFARGYYLSLDMK-----SAPQKSYIGY  376 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~-----~~g~g~~igld~~-----~~~~~~~ig~  376 (601)
                      ++.++   +++++...-++.+++++...   .|++++++       +     ..|+.++.+.++.     ....++.++|
T Consensus        16 ~~~~l---~~is~~i~~Ge~~~l~G~nG---sGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~   89 (253)
T PRK14267         16 SNHVI---KGVDLKIPQNGVFALMGPSG---CGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGM   89 (253)
T ss_pred             Ceeee---ecceEEEcCCCEEEEECCCC---CCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeE
Confidence            44544   89999999999999997522   44444332       1     1344434443332     1123567999


Q ss_pred             CCCCcccCCCCCHHHHHHHhHHhcCC--ChhHHHHHHHHHHHHcCCC----cccccccCcCChHHHHHHHHHHHHhCCCC
Q psy7365         377 CPQFDALNDRLTPREHLEFYSRVRNL--PSVLLNTIVNESLNKFALG----HYSDREVRTLSGGNKRKLSTAIALLGNTP  450 (601)
Q Consensus       377 v~Q~~~l~~~lTv~E~L~~~~~~~g~--~~~~~~~~~~~lLe~~~L~----~~~~~~~~~LSgGqkQRl~lA~AL~~~P~  450 (601)
                      +||++.+++.+|+.||+.+.....+.  +.....+++.++++.+++.    +..++++.+||||||||++||+||+.+|+
T Consensus        90 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~  169 (253)
T PRK14267         90 VFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPK  169 (253)
T ss_pred             EecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999876544332  2334445678899999984    35688999999999999999999999999


Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         451 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       451 lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ++||||||+|||+.+++.++++|+++.+ ++|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus       170 llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  237 (253)
T PRK14267        170 ILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFE  237 (253)
T ss_pred             EEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence            9999999999999999999999999865 6999999999999999999999999999999999998754

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.96  E-value=3.8e-29  Score=255.97  Aligned_cols=198  Identities=21%  Similarity=0.324  Sum_probs=157.6

Q ss_pred             CcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cc---cccccccccccCC--------cccccccc
Q psy7365         314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NS---FARGYYLSLDMKS--------APQKSYIG  375 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~---~g~g~~igld~~~--------~~~~~~ig  375 (601)
                      ++.++   +++++...-++.+++++...   .|++++++       +.   .|..++.|.+...        ...++.++
T Consensus        16 ~~~il---~~vs~~i~~Ge~~~i~G~nG---sGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~   89 (262)
T PRK09984         16 QHQAL---HAVDLNIHHGEMVALLGPSG---SGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTG   89 (262)
T ss_pred             CeEEE---ecceEEEcCCcEEEEECCCC---CCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheE
Confidence            44444   88999999999999997522   44444332       11   1333333333221        11245799


Q ss_pred             cCCCCcccCCCCCHHHHHHHhHHh--------cCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhC
Q psy7365         376 YCPQFDALNDRLTPREHLEFYSRV--------RNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG  447 (601)
Q Consensus       376 ~v~Q~~~l~~~lTv~E~L~~~~~~--------~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~  447 (601)
                      |+||++.+++.+|+.||+.+....        .+......+.++.++++.+++.+..++++.+||||||||++||+||+.
T Consensus        90 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~  169 (262)
T PRK09984         90 YIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQ  169 (262)
T ss_pred             EEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhc
Confidence            999999999999999999864320        111122344578899999999888899999999999999999999999


Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHH
Q psy7365         448 NTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL  517 (601)
Q Consensus       448 ~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L  517 (601)
                      +|++|||||||+|||+.+++.++++|++++++ |+|||++|||++++..+|||+++|++|+++..|+++++
T Consensus       170 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~  240 (262)
T PRK09984        170 QAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF  240 (262)
T ss_pred             CCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence            99999999999999999999999999999764 89999999999999999999999999999999999876

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2.9e-29  Score=259.92  Aligned_cols=194  Identities=22%  Similarity=0.274  Sum_probs=159.2

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------ccc---ccccccccccCC---cccccccccCCCCcc-cCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSF---ARGYYLSLDMKS---APQKSYIGYCPQFDA-LNDRL  387 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~---g~g~~igld~~~---~~~~~~ig~v~Q~~~-l~~~l  387 (601)
                      +++++-..-++.+++++...   +|++++++       +..   |..++.+.+...   ...++++||+||++. +++..
T Consensus        24 ~~v~l~i~~Ge~~~I~G~nG---aGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~  100 (282)
T PRK13640         24 NDISFSIPRGSWTALIGHNG---SGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGA  100 (282)
T ss_pred             eeEEEEEcCCCEEEEECCCC---CcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccC
Confidence            88888888999999997522   45554432       222   333333433322   123567999999974 67789


Q ss_pred             CHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHH
Q psy7365         388 TPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARR  467 (601)
Q Consensus       388 Tv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~  467 (601)
                      |++||+.|....++.+..+..+++.++++.++|.+..++++.+||||||||++||+||+.+|++|||||||+|||+.+++
T Consensus       101 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~  180 (282)
T PRK13640        101 TVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKE  180 (282)
T ss_pred             CHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHH
Confidence            99999987655555555555677899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         468 FLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       468 ~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      .++++|+++.++ |+|||++||++++++ +|||+++|++|++++.|+++++..
T Consensus       181 ~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~  232 (282)
T PRK13640        181 QILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEIFS  232 (282)
T ss_pred             HHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeCCHHHHhc
Confidence            999999999765 999999999999995 799999999999999999998754

>KOG0065|consensus

Probab=99.96  E-value=2.4e-29  Score=292.35  Aligned_cols=146  Identities=27%  Similarity=0.419  Sum_probs=131.1

Q ss_pred             ccccccCCCCcccCCCCCHHHHHHHhHHhcC---CChhHHHHHHHHHHHHcCCCcccccccCc----CChHHHHHHHHHH
Q psy7365         371 KSYIGYCPQFDALNDRLTPREHLEFYSRVRN---LPSVLLNTIVNESLNKFALGHYSDREVRT----LSGGNKRKLSTAI  443 (601)
Q Consensus       371 ~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g---~~~~~~~~~~~~lLe~~~L~~~~~~~~~~----LSgGqkQRl~lA~  443 (601)
                      +|.+|||-|++...+.+||+|-|.|.+.++.   .+.++..+.++++++.++|++++|.-++.    ||..||+||.||.
T Consensus       863 ~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgV  942 (1391)
T KOG0065|consen  863 ARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGV  942 (1391)
T ss_pred             ccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEE
Confidence            3579999999988899999999999988763   34444457899999999999999988888    9999999999999


Q ss_pred             HHhCCC-CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChh-HHHhhCCEEEEEeC-CEEEEecCHHH
Q psy7365         444 ALLGNT-PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME-ECEALCTKLTIMVN-GQFTCLGSATH  516 (601)
Q Consensus       444 AL~~~P-~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~-e~~~l~drv~iL~~-G~iv~~G~~~~  516 (601)
                      -|+.+| .||+|||||||||..+...+.+.++++++.|.||+.|-|... .+.+.-||+++|++ |+.+..|++.+
T Consensus       943 ELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen  943 ELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred             EEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence            999999 999999999999999999999999999999999999999986 66677899999975 78999999754

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=3.6e-29  Score=257.66  Aligned_cols=194  Identities=21%  Similarity=0.295  Sum_probs=157.6

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC---cccccccccCCCCcc-cCCCCCHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS---APQKSYIGYCPQFDA-LNDRLTPR  390 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~---~~~~~~ig~v~Q~~~-l~~~lTv~  390 (601)
                      +++++...-++.+++++...   .|++++++       +..|..++.+.+...   ...++.+||+||++. .++.+|++
T Consensus        26 ~~isl~i~~Ge~~~l~G~nG---sGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~  102 (271)
T PRK13632         26 KNVSFEINEGEYVAILGHNG---SGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVE  102 (271)
T ss_pred             eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHH
Confidence            88888888999999997522   45554432       223333333433322   123567999999974 67778999


Q ss_pred             HHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHH
Q psy7365         391 EHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW  470 (601)
Q Consensus       391 E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~  470 (601)
                      ||+.+.....+....+..+++.++++.++|.+..++++.+||||||||++||+||+.+|++|||||||+|||+.+++.++
T Consensus       103 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~  182 (271)
T PRK13632        103 DDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIK  182 (271)
T ss_pred             HHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence            99988654444444445567889999999998899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         471 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       471 ~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ++|++++++ ++|||++||+++++. +|||+++|++|+++..|+++++..
T Consensus       183 ~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~  231 (271)
T PRK13632        183 KIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEILN  231 (271)
T ss_pred             HHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHHhc
Confidence            999999776 599999999999996 799999999999999999988754

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.96  E-value=8e-29  Score=250.01  Aligned_cols=194  Identities=24%  Similarity=0.279  Sum_probs=155.7

Q ss_pred             CCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccC--CcccccccccCC-CCcc
Q psy7365         313 SGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMK--SAPQKSYIGYCP-QFDA  382 (601)
Q Consensus       313 ~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~--~~~~~~~ig~v~-Q~~~  382 (601)
                      .+++++   +++++...-++.+++++...   .|++++++       +..|..++.+.+..  ....++.++|+| |.+.
T Consensus        32 ~~~~il---~~vs~~i~~Ge~~~i~G~NG---sGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~  105 (236)
T cd03267          32 REVEAL---KGISFTIEKGEIVGFIGPNG---AGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQ  105 (236)
T ss_pred             CCeeee---eceeEEEcCCCEEEEECCCC---CCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccc
Confidence            344554   89999999999999997522   45554432       22333333232221  122356799998 5567


Q ss_pred             cCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCC
Q psy7365         383 LNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD  462 (601)
Q Consensus       383 l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD  462 (601)
                      +++.+|++||+.+...+++....+..+++.++++.+++.+..++++.+||||||||++||+||+.+|+++||||||+|||
T Consensus       106 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD  185 (236)
T cd03267         106 LWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD  185 (236)
T ss_pred             cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence            88889999999887666665555555678889999999988899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEec
Q psy7365         463 PGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLG  512 (601)
Q Consensus       463 ~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G  512 (601)
                      +.+++.+.++|++++++ |+|||++||+++++..+||++++|++|++++.|
T Consensus       186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g  236 (236)
T cd03267         186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG  236 (236)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence            99999999999999765 899999999999999999999999999998764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.96  E-value=3.2e-29  Score=267.49  Aligned_cols=207  Identities=25%  Similarity=0.403  Sum_probs=167.0

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-ch
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DM  123 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~  123 (601)
                      .+|+++..  .++..++.++|+||++.+      +||||+  |||||     . |+|.|..+|++|.|++||.++.. +.
T Consensus       336 ~Ve~l~~~--PPg~~~pil~~isF~l~~G~~lgIIGPSgS--GKSTL-----a-R~lvG~w~p~~G~VRLDga~l~qWd~  405 (580)
T COG4618         336 SVERLTAA--PPGQKKPILKGISFALQAGEALGIIGPSGS--GKSTL-----A-RLLVGIWPPTSGSVRLDGADLRQWDR  405 (580)
T ss_pred             eEeeeeec--CCCCCCcceecceeEecCCceEEEECCCCc--cHHHH-----H-HHHHcccccCCCcEEecchhhhcCCH
Confidence            47888875  788889999999999998      999999  56665     4 69999999999999999999975 56


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHH-----HHHHHHHHHcC--CCcccCCccccCChHHHhhhh
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQ-----LEISNMIGDLG--IPHKRTSLANTLSGGMQRKLD  196 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~g--l~~~~~~~~~~LSgG~~qr~~  196 (601)
                      +.+.+.|||+||+-.+|+. ||.||++-+.+.  .+.+..-     ..+.+++-.+-  -+-....--..||||||||++
T Consensus       406 e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~~--~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIa  482 (580)
T COG4618         406 EQLGRHIGYLPQDVELFDG-TIAENIARFGEE--ADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIA  482 (580)
T ss_pred             HHhccccCcCcccceecCC-cHHHHHHhcccc--CCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHH
Confidence            7788999999999999975 999999865432  2333221     12445555543  223334455789999999998


Q ss_pred             chhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccC
Q psy7365         197 NVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFV  276 (601)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  276 (601)
                      +|||+|.|                                                                        
T Consensus       483 LARAlYG~------------------------------------------------------------------------  490 (580)
T COG4618         483 LARALYGD------------------------------------------------------------------------  490 (580)
T ss_pred             HHHHHcCC------------------------------------------------------------------------
Confidence            87776655                                                                        


Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                       |.+++||||-|+||......+.+.|..+     +.+|.|+|++||+.+.+. .+|+|.+|.+|++...|...
T Consensus       491 -P~lvVLDEPNsNLD~~GE~AL~~Ai~~~-----k~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~~FG~r~  556 (580)
T COG4618         491 -PFLVVLDEPNSNLDSEGEAALAAAILAA-----KARGGTVVVIAHRPSALA-SVDKILVLQDGRIAAFGPRE  556 (580)
T ss_pred             -CcEEEecCCCCCcchhHHHHHHHHHHHH-----HHcCCEEEEEecCHHHHh-hcceeeeecCChHHhcCCHH
Confidence             4799999999999999999999999988     357999999999987665 89999999999998887653

>KOG0055|consensus

Probab=99.96  E-value=1.5e-29  Score=294.36  Aligned_cols=209  Identities=27%  Similarity=0.375  Sum_probs=167.9

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      ++++||++.|... .+.++++|+||++.+      .|||||  |||     |+ ..+|-.++.|++|.|.+||.++++ +
T Consensus       988 I~~~~V~F~YPsR-P~~~Il~~l~l~i~~GqTvALVG~SGs--GKS-----Tv-I~LLeRfYdp~~G~V~IDg~dik~ln 1058 (1228)
T KOG0055|consen  988 IEFRNVSFAYPTR-PDVPVLNNLSLSIRAGQTVALVGPSGS--GKS-----TV-ISLLERFYDPDAGKVKIDGVDIKDLN 1058 (1228)
T ss_pred             EEEeeeEeeCCCC-CCchhhcCCcEEecCCCEEEEECCCCC--CHH-----HH-HHHHHHhcCCCCCeEEECCcccccCC
Confidence            4599999996532 378899999999988      999999  455     44 579999999999999999999986 5


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHH-----HHHHHHHc--CCCcccCCccccCChHHHhhh
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIGDL--GIPHKRTSLANTLSGGMQRKL  195 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LSgG~~qr~  195 (601)
                      ...+|+.+|.|.|+|.|| +-|++||+.|+.  ..++.+++.+.     +.+.+..+  |.+-....+..+||||||||+
T Consensus      1059 l~~LR~~i~lVsQEP~LF-~~TIrENI~YG~--~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRI 1135 (1228)
T KOG0055|consen 1059 LKWLRKQIGLVSQEPVLF-NGTIRENIAYGS--EEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRI 1135 (1228)
T ss_pred             HHHHHHhcceeccCchhh-cccHHHHHhccC--CCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHH
Confidence            677899999999999999 679999999982  22555544332     22222222  233334556679999999999


Q ss_pred             hchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhcc
Q psy7365         196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSF  275 (601)
Q Consensus       196 ~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  275 (601)
                      |||||++.|                                                                       
T Consensus      1136 AIARAilRn----------------------------------------------------------------------- 1144 (1228)
T KOG0055|consen 1136 AIARAILRN----------------------------------------------------------------------- 1144 (1228)
T ss_pred             HHHHHHHcC-----------------------------------------------------------------------
Confidence            866554333                                                                       


Q ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       276 ~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                        |++|+|||-||+||.++.+.+.+.|.+.      ..|+|.|++.|+++.+. -||.|+|+++|+++..|+-..
T Consensus      1145 --PkILLLDEATSALDseSErvVQeALd~a------~~gRT~IvIAHRLSTIq-naD~I~Vi~~G~VvE~GtH~~ 1210 (1228)
T KOG0055|consen 1145 --PKILLLDEATSALDSESERVVQEALDRA------MEGRTTIVIAHRLSTIQ-NADVIAVLKNGKVVEQGTHDE 1210 (1228)
T ss_pred             --CCeeeeeccchhhhhhhHHHHHHHHHHh------hcCCcEEEEecchhhhh-cCCEEEEEECCEEEecccHHH
Confidence              5899999999999999999999999987      46899999999999886 799999999999999987543

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.96  E-value=5e-29  Score=255.69  Aligned_cols=200  Identities=20%  Similarity=0.249  Sum_probs=158.6

Q ss_pred             CCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC---cccccccccCCCCcc
Q psy7365         313 SGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS---APQKSYIGYCPQFDA  382 (601)
Q Consensus       313 ~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~---~~~~~~ig~v~Q~~~  382 (601)
                      .+++++   +++++...-++++++++...   .|++++++       +..|...+.+.+...   ...++.+||+||++.
T Consensus        18 ~~~~~l---~~isl~i~~Ge~~~i~G~nG---sGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~   91 (265)
T PRK10253         18 GKYTVA---ENLTVEIPDGHFTAIIGPNG---CGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNAT   91 (265)
T ss_pred             CCEEEe---eecceEECCCCEEEEECCCC---CCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCc
Confidence            344544   89999999999999997522   45554432       222333333333221   122457999999999


Q ss_pred             cCCCCCHHHHHHHhHH-hcC---CChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCC
Q psy7365         383 LNDRLTPREHLEFYSR-VRN---LPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPT  458 (601)
Q Consensus       383 l~~~lTv~E~L~~~~~-~~g---~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPT  458 (601)
                      +++.+|++||+.+... ..+   ...+...+++.++++.++|.+..++++.+||||||||++||+|++.+|+++||||||
T Consensus        92 ~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt  171 (265)
T PRK10253         92 TPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPT  171 (265)
T ss_pred             CCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence            8888999999987421 111   112233456889999999998889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHH
Q psy7365         459 SGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  518 (601)
Q Consensus       459 sGLD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~  518 (601)
                      +|||+.+++.++++|+++.++ |.|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus       172 ~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  232 (265)
T PRK10253        172 TWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV  232 (265)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            999999999999999999764 899999999999999999999999999999999998874

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=6.6e-29  Score=262.75  Aligned_cols=196  Identities=17%  Similarity=0.175  Sum_probs=155.1

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-----------cccccccccccccCCcc-------cccccccCCCCcc-
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-----------NSFARGYYLSLDMKSAP-------QKSYIGYCPQFDA-  382 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-----------~~~g~g~~igld~~~~~-------~~~~ig~v~Q~~~-  382 (601)
                      +++++-..-++.+++++...   +|++++++           ...|..++.+.++....       .++.|+|+||++. 
T Consensus        24 ~~vsl~i~~Ge~~~ivG~sG---sGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~  100 (330)
T PRK15093         24 DRVSMTLTEGEIRGLVGESG---SGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQS  100 (330)
T ss_pred             eeeEEEECCCCEEEEECCCC---CCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcch
Confidence            89999999999999997522   44444322           12233434444332211       1246999999975 


Q ss_pred             -cCCCCCHHHHHHHhHHhc---CC---ChhHHHHHHHHHHHHcCCCc---ccccccCcCChHHHHHHHHHHHHhCCCCEE
Q psy7365         383 -LNDRLTPREHLEFYSRVR---NL---PSVLLNTIVNESLNKFALGH---YSDREVRTLSGGNKRKLSTAIALLGNTPLI  452 (601)
Q Consensus       383 -l~~~lTv~E~L~~~~~~~---g~---~~~~~~~~~~~lLe~~~L~~---~~~~~~~~LSgGqkQRl~lA~AL~~~P~lL  452 (601)
                       +++.+|+.+++.+....+   +.   ...+.++++.++|+.++|.+   ..++++.+|||||||||+||+||+.+|++|
T Consensus       101 ~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~ll  180 (330)
T PRK15093        101 CLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLL  180 (330)
T ss_pred             hcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEE
Confidence             678899999997543211   11   11234567889999999974   457899999999999999999999999999


Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         453 FLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       453 lLDEPTsGLD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      ||||||+|||+.++.+++++|+++.++ |.|||++|||++++..+||||++|++|+|+..|+++++.+.
T Consensus       181 ilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i~~~  249 (330)
T PRK15093        181 IADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTT  249 (330)
T ss_pred             EEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            999999999999999999999999875 99999999999999999999999999999999999988654

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.96  E-value=2.4e-29  Score=310.51  Aligned_cols=204  Identities=17%  Similarity=0.206  Sum_probs=163.9

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++||++.|..  ...++|+|+||++++      +|||||  |||||      .++|.|+++|++|+|++||.|+.+ +
T Consensus      1285 I~f~nVsf~Y~~--~~~~vL~~is~~I~~GekiaIVGrTGs--GKSTL------~~lL~rl~~~~~G~I~IdG~dI~~i~ 1354 (1522)
T TIGR00957      1285 VEFRNYCLRYRE--DLDLVLRHINVTIHGGEKVGIVGRTGA--GKSSL------TLGLFRINESAEGEIIIDGLNIAKIG 1354 (1522)
T ss_pred             EEEEEEEEEeCC--CCcccccceeEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCccCCCCeEEECCEEccccC
Confidence            559999999853  234699999999988      999999  56654      569999999999999999999975 5


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC-----------cccCCccccCChHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP-----------HKRTSLANTLSGGM  191 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgG~  191 (601)
                      ...+|+++++|||+|.+|.. |++||+..+.   ..+.+    ++.++++..++.           .........|||||
T Consensus      1355 ~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~---~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQ 1426 (1522)
T TIGR00957      1355 LHDLRFKITIIPQDPVLFSG-SLRMNLDPFS---QYSDE----EVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQ 1426 (1522)
T ss_pred             HHHHHhcCeEECCCCcccCc-cHHHHcCccc---CCCHH----HHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHH
Confidence            67789999999999999976 9999996321   23333    344556655543           23334446799999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||+++|||++.+                                                                   
T Consensus      1427 rQrl~LARALLr~------------------------------------------------------------------- 1439 (1522)
T TIGR00957      1427 RQLVCLARALLRK------------------------------------------------------------------- 1439 (1522)
T ss_pred             HHHHHHHHHHHcC-------------------------------------------------------------------
Confidence            9999866543322                                                                   


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  351 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL  351 (601)
                            |++||||||||+||+.+...+.+.|++.      .+++|+|+++|+++.+. .||||++|++|+++..|++..+
T Consensus      1440 ------~~ILiLDEaTSalD~~Te~~Iq~~l~~~------~~~~TvI~IAHRl~ti~-~~DrIlVld~G~IvE~G~~~eL 1506 (1522)
T TIGR00957      1440 ------TKILVLDEATAAVDLETDNLIQSTIRTQ------FEDCTVLTIAHRLNTIM-DYTRVIVLDKGEVAEFGAPSNL 1506 (1522)
T ss_pred             ------CCEEEEECCcccCCHHHHHHHHHHHHHH------cCCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHH
Confidence                  4899999999999999999999999875      35899999999998877 4899999999999998876543

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.96  E-value=4.2e-29  Score=256.47  Aligned_cols=207  Identities=18%  Similarity=0.198  Sum_probs=163.3

Q ss_pred             EecchhHHHhcCCEEEEecC---CccccccCc-cccc-c----ccccccccccccCCc------c-cccccccCCCCc--
Q psy7365         320 TTHYMDEADLLGDRIAIIAA---GKLQCCGSS-VFLK-N----SFARGYYLSLDMKSA------P-QKSYIGYCPQFD--  381 (601)
Q Consensus       320 ~tHdl~~~~~l~Drv~vL~~---GkIv~~G~~-~lLk-~----~~g~g~~igld~~~~------~-~~~~ig~v~Q~~--  381 (601)
                      +-+++++-..-++.+.+++.   ||.+..... .++. .    ..++..+.+.+....      . ..+.|+|+||++  
T Consensus        20 av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~   99 (316)
T COG0444          20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMT   99 (316)
T ss_pred             EEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchh
Confidence            34899999999999999975   443211100 0111 1    112223333332211      1 235799999997  


Q ss_pred             ccCCCCCHHHHHHHhHHhcC-C-ChhHHHHHHHHHHHHcCCCc---ccccccCcCChHHHHHHHHHHHHhCCCCEEEEEC
Q psy7365         382 ALNDRLTPREHLEFYSRVRN-L-PSVLLNTIVNESLNKFALGH---YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDE  456 (601)
Q Consensus       382 ~l~~~lTv~E~L~~~~~~~g-~-~~~~~~~~~~~lLe~~~L~~---~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDE  456 (601)
                      +|.|-+|+.+.+.-....+. . .++++.+++.++|+.+++.+   ..+.+|.+|||||+|||.||.||+.+|++||.||
T Consensus       100 sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADE  179 (316)
T COG0444         100 SLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADE  179 (316)
T ss_pred             hcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCC
Confidence            58889999988876655443 3 35667889999999999975   5688999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHhCCceE
Q psy7365         457 PTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYS  526 (601)
Q Consensus       457 PTsGLD~~~~~~i~~lL~~l~~-~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~~~~~~  526 (601)
                      ||++||...+.++.++|+++++ .|.|+|++|||+..+.++||||+||..|+|+..|+.+++.+...+.|+
T Consensus       180 PTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~P~HPYT  250 (316)
T COG0444         180 PTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPKHPYT  250 (316)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcCCCChHH
Confidence            9999999999999999999986 599999999999999999999999999999999999999877666553

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=4.6e-29  Score=259.14  Aligned_cols=195  Identities=22%  Similarity=0.257  Sum_probs=155.6

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccC--------CcccccccccCCCCccc-CC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMK--------SAPQKSYIGYCPQFDAL-ND  385 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~--------~~~~~~~ig~v~Q~~~l-~~  385 (601)
                      +++++...-++.+++++...   .|++++++       +..|..++.+.+..        ....++.++|+||++.. +.
T Consensus        28 ~~is~~i~~Ge~~~l~G~nG---sGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~  104 (289)
T PRK13645         28 NNTSLTFKKNKVTCVIGTTG---SGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLF  104 (289)
T ss_pred             eeeEEEEeCCCEEEEECCCC---CCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhh
Confidence            88999999999999997522   45554432       23333333333321        11235679999999742 23


Q ss_pred             CCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCC-cccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHH
Q psy7365         386 RLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG  464 (601)
Q Consensus       386 ~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~-~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~  464 (601)
                      ..|++||+.|.....+.......+++.++++.++|. +..++++.+||||||||++||+||+.+|++|||||||+|||+.
T Consensus       105 ~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~  184 (289)
T PRK13645        105 QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPK  184 (289)
T ss_pred             hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence            469999998765444444444456688899999994 6789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         465 ARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       465 ~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      +++.++++|+++.++ |+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus       185 ~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  240 (289)
T PRK13645        185 GEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS  240 (289)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            999999999998764 8999999999999999999999999999999999988754

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.96  E-value=7.2e-29  Score=248.48  Aligned_cols=186  Identities=23%  Similarity=0.299  Sum_probs=150.0

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcc-------cccccccCCCCcccCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAP-------QKSYIGYCPQFDALNDRL  387 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~-------~~~~ig~v~Q~~~l~~~l  387 (601)
                      +++++...-++.+++++...   .|++++++       +..|..++.+.+.....       .++.++|+||++.+++.+
T Consensus        27 ~~~s~~i~~Ge~~~i~G~nG---sGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~  103 (228)
T PRK10584         27 TGVELVVKRGETIALIGESG---SGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTL  103 (228)
T ss_pred             eccEEEEcCCCEEEEECCCC---CCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCc
Confidence            88888888999999997522   45554432       23333333333322111       125699999999999999


Q ss_pred             CHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHH
Q psy7365         388 TPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARR  467 (601)
Q Consensus       388 Tv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~  467 (601)
                      |+.||+.+....++.+....++++.++++.+++.+..++++.+||||||||++||+||+.+|++|||||||+|||+.+++
T Consensus       104 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~  183 (228)
T PRK10584        104 NALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGD  183 (228)
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence            99999987654444444455667899999999998889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEe
Q psy7365         468 FLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCL  511 (601)
Q Consensus       468 ~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~  511 (601)
                      .++++|++++++ |.|||++|||+++++. ||++++|++|+++..
T Consensus       184 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~~~  227 (228)
T PRK10584        184 KIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQEE  227 (228)
T ss_pred             HHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEEEec
Confidence            999999999765 8999999999999865 999999999998753

>PTZ00243 ABC transporter; Provisional

Probab=99.96  E-value=2.1e-29  Score=310.70  Aligned_cols=204  Identities=22%  Similarity=0.328  Sum_probs=164.5

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.|+||+++|..  ....+|+|+||++.+      +|+||+  |||||      .++|.|+++|++|+|.+||.|+.. +
T Consensus      1309 I~f~nVsf~Y~~--~~~~vL~~vsf~I~~GekVaIVGrTGS--GKSTL------l~lLlrl~~p~~G~I~IDG~di~~i~ 1378 (1560)
T PTZ00243       1309 LVFEGVQMRYRE--GLPLVLRGVSFRIAPREKVGIVGRTGS--GKSTL------LLTFMRMVEVCGGEIRVNGREIGAYG 1378 (1560)
T ss_pred             EEEEEEEEEeCC--CCCceeecceEEECCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCcEEEECCEEcccCC
Confidence            559999999853  234599999999988      999999  56655      569999999999999999999975 5


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCccc-------C----CccccCChHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKR-------T----SLANTLSGGM  191 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~----~~~~~LSgG~  191 (601)
                      ...+|+.+|+|||+|.+|.. |++|||..+.   ..+.    +++.++++..|+.+..       +    .....|||||
T Consensus      1379 l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~---~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQ 1450 (1560)
T PTZ00243       1379 LRELRRQFSMIPQDPVLFDG-TVRQNVDPFL---EASS----AEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQ 1450 (1560)
T ss_pred             HHHHHhcceEECCCCccccc-cHHHHhCccc---CCCH----HHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHH
Confidence            66789999999999999965 9999996432   2232    3466777777765432       2    3346799999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||++||||+++                                      +                             
T Consensus      1451 rQrLaLARALL~--------------------------------------~----------------------------- 1463 (1560)
T PTZ00243       1451 RQLMCMARALLK--------------------------------------K----------------------------- 1463 (1560)
T ss_pred             HHHHHHHHHHhc--------------------------------------C-----------------------------
Confidence            999986554332                                      1                             


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                           +|++||||||||+||+.+.+.+.+.|++.      ..++|+|+|+|+++.+. .||+|++|++|+++..|++..
T Consensus      1464 -----~~~ILlLDEATSaLD~~te~~Iq~~L~~~------~~~~TvI~IAHRl~ti~-~~DrIlVLd~G~VvE~Gt~~e 1530 (1560)
T PTZ00243       1464 -----GSGFILMDEATANIDPALDRQIQATVMSA------FSAYTVITIAHRLHTVA-QYDKIIVMDHGAVAEMGSPRE 1530 (1560)
T ss_pred             -----CCCEEEEeCCCccCCHHHHHHHHHHHHHH------CCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEECCHHH
Confidence                 14899999999999999999999999875      35799999999998775 699999999999998887644

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=7.5e-29  Score=252.31  Aligned_cols=193  Identities=21%  Similarity=0.259  Sum_probs=154.1

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccccc------------ccccccccccccCC-----cccccccccCCCCcccC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN------------SFARGYYLSLDMKS-----APQKSYIGYCPQFDALN  384 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~------------~~g~g~~igld~~~-----~~~~~~ig~v~Q~~~l~  384 (601)
                      +++++...-++.+++++...   .|++++++.            ..|..++.+.+...     ...++.++|+||++.++
T Consensus        23 ~~is~~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~   99 (253)
T PRK14242         23 HDISLEFEQNQVTALIGPSG---CGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPF   99 (253)
T ss_pred             cceeEEEeCCCEEEEECCCC---CCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCC
Confidence            88999889999999997522   455543321            12333333333321     12356799999999888


Q ss_pred             CCCCHHHHHHHhHHhcCCC-hhHHHHHHHHHHHHcCCCc----ccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCC
Q psy7365         385 DRLTPREHLEFYSRVRNLP-SVLLNTIVNESLNKFALGH----YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTS  459 (601)
Q Consensus       385 ~~lTv~E~L~~~~~~~g~~-~~~~~~~~~~lLe~~~L~~----~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTs  459 (601)
                      + .|+.||+.+....++.. .+...+++.++++.+++.+    ..++++.+||||||||++||+||+.+|++|||||||+
T Consensus       100 ~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~  178 (253)
T PRK14242        100 P-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPAS  178 (253)
T ss_pred             c-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence            7 59999998865544432 2334567888999999853    4678899999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         460 GMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       460 GLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      |||+.++..++++|+++. +|+|||++|||++++..+|||+++|++|+++..|+++++.+
T Consensus       179 ~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  237 (253)
T PRK14242        179 ALDPIATQKIEELIHELK-ARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFT  237 (253)
T ss_pred             cCCHHHHHHHHHHHHHHh-cCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence            999999999999999985 47999999999999999999999999999999999988754

>PLN03073 ABC transporter F family; Provisional

Probab=99.96  E-value=8.1e-29  Score=285.07  Aligned_cols=190  Identities=22%  Similarity=0.327  Sum_probs=150.3

Q ss_pred             cchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccC
Q psy7365          46 GAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI  119 (601)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~  119 (601)
                      +.++..+++|++.|+.   ..++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.+++   
T Consensus       505 ~~~~L~~~~ls~~y~~---~~~il~~vsl~i~~Ge~i~LvG~NGs--GKSTL------Lk~L~Gll~p~~G~I~~~~---  570 (718)
T PLN03073        505 GPPIISFSDASFGYPG---GPLLFKNLNFGIDLDSRIAMVGPNGI--GKSTI------LKLISGELQPSSGTVFRSA---  570 (718)
T ss_pred             CCceEEEEeeEEEeCC---CCeeEeccEEEEcCCCEEEEECCCCC--cHHHH------HHHHhCCCCCCCceEEECC---
Confidence            3456679999999842   23589999999987      999999  56665      6799999999999999865   


Q ss_pred             CCchHHhcccEEEEccCCCCCCCCCHHHHHHHhH-hhc-CCChHHHHHHHHHHHHHcCCCc-ccCCccccCChHHHhhhh
Q psy7365         120 RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYS-QLK-QVPKDLAQLEISNMIGDLGIPH-KRTSLANTLSGGMQRKLD  196 (601)
Q Consensus       120 ~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~-~~~-~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qr~~  196 (601)
                             +.++||+||++  +..+++.++..+.. ..+ +.+    .+++.++++.+|+.. ..++++.+||||||||++
T Consensus       571 -------~~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRva  637 (718)
T PLN03073        571 -------KVRMAVFSQHH--VDGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA  637 (718)
T ss_pred             -------ceeEEEEeccc--cccCCcchhHHHHHHHhcCCCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHH
Confidence                   24699999986  23455666643321 111 222    356788999999984 678999999999999998


Q ss_pred             chhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccC
Q psy7365         197 NVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFV  276 (601)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  276 (601)
                      +||++                                      +.+                                  
T Consensus       638 LAraL--------------------------------------~~~----------------------------------  645 (718)
T PLN03073        638 FAKIT--------------------------------------FKK----------------------------------  645 (718)
T ss_pred             HHHHH--------------------------------------hcC----------------------------------
Confidence            54432                                      222                                  


Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccc
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQ  343 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv  343 (601)
                       |++|||||||+|||+.++..+.+.|.+.       .| |||++|||++++..+||++++|.+|+++
T Consensus       646 -p~lLLLDEPT~~LD~~s~~~l~~~L~~~-------~g-tvIivSHd~~~i~~~~drv~~l~~G~i~  703 (718)
T PLN03073        646 -PHILLLDEPSNHLDLDAVEALIQGLVLF-------QG-GVLMVSHDEHLISGSVDELWVVSEGKVT  703 (718)
T ss_pred             -CCEEEEcCCCCCCCHHHHHHHHHHHHHc-------CC-EEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence             5899999999999999999988887653       34 9999999999999999999999999986

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.96  E-value=5.5e-29  Score=254.57  Aligned_cols=188  Identities=21%  Similarity=0.257  Sum_probs=151.9

Q ss_pred             CcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcccccccccCCCCcccCCC
Q psy7365         314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDR  386 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~~~~~ig~v~Q~~~l~~~  386 (601)
                      ++.++   +++++...-++.+++++...   +|++++++       +..|+.++.+.+.  ...++.++|+||++.+++.
T Consensus        24 ~~~il---~~isl~i~~Ge~~~I~G~NG---sGKSTLlk~l~Gl~~p~~G~i~~~g~~~--~~~~~~i~~v~q~~~l~~~   95 (257)
T PRK11247         24 ERTVL---NQLDLHIPAGQFVAVVGRSG---CGKSTLLRLLAGLETPSAGELLAGTAPL--AEAREDTRLMFQDARLLPW   95 (257)
T ss_pred             Cccee---eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhcCCCCCCeEEEECCEEH--HHhhCceEEEecCccCCCC
Confidence            44444   88888888899999997522   55555443       2223322212111  1235679999999999998


Q ss_pred             CCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHH
Q psy7365         387 LTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR  466 (601)
Q Consensus       387 lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~  466 (601)
                      +|++||+.+..  +.    ...+++.++++.++|.+..++++.+||||||||++||+||+.+|+++||||||+|||+.++
T Consensus        96 ~tv~enl~~~~--~~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~  169 (257)
T PRK11247         96 KKVIDNVGLGL--KG----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTR  169 (257)
T ss_pred             CcHHHHHHhcc--cc----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence            99999998742  11    1235678899999999888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh-CCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHH
Q psy7365         467 RFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT  515 (601)
Q Consensus       467 ~~i~~lL~~l~~-~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~  515 (601)
                      ..++++|+++.+ .|+|||++|||++++..+|||+++|++|+++..|+.+
T Consensus       170 ~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~  219 (257)
T PRK11247        170 IEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD  219 (257)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence            999999999865 4899999999999999999999999999999988764

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.2e-28  Score=250.61  Aligned_cols=193  Identities=19%  Similarity=0.236  Sum_probs=154.3

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccccc------------ccccccccccccCC-----cccccccccCCCCcccC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN------------SFARGYYLSLDMKS-----APQKSYIGYCPQFDALN  384 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~------------~~g~g~~igld~~~-----~~~~~~ig~v~Q~~~l~  384 (601)
                      +++++...-++.+++++...   .|++++++.            ..|...+.+.+...     ...++.++|+||++.++
T Consensus        20 ~~vs~~i~~Ge~~~i~G~nG---sGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~   96 (250)
T PRK14245         20 KGISMEIEEKSVVAFIGPSG---CGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPF   96 (250)
T ss_pred             eeeeEEEeCCCEEEEECCCC---CCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccC
Confidence            88888889999999998522   444443321            12333333433321     12356799999998888


Q ss_pred             CCCCHHHHHHHhHHhcCCCh-hHHHHHHHHHHHHcCCCc----ccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCC
Q psy7365         385 DRLTPREHLEFYSRVRNLPS-VLLNTIVNESLNKFALGH----YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTS  459 (601)
Q Consensus       385 ~~lTv~E~L~~~~~~~g~~~-~~~~~~~~~lLe~~~L~~----~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTs  459 (601)
                      + .|+.||+.+....++... ....+.+.++++.+++.+    ..++++.+||||||||++||+||+.+|+++||||||+
T Consensus        97 ~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~  175 (250)
T PRK14245         97 P-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPAS  175 (250)
T ss_pred             c-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            6 699999987655444322 234466888999999853    4678899999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         460 GMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       460 GLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      |||+.++..++++|+++. +|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus       176 ~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~  234 (250)
T PRK14245        176 ALDPISTAKVEELIHELK-KDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT  234 (250)
T ss_pred             cCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence            999999999999999985 57999999999999999999999999999999999998864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	601
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		6e-14
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		3e-10
3d31_A	348	Modbc From Methanosarcina Acetivorans Length = 348		1e-09
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		2e-09
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		2e-09
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		3e-09
2nq2_C	253	An Inward-Facing Conformation Of A Putative Metal-C		3e-08
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		4e-08
2onk_A	240	Abc Transporter Modbc In Complex With Its Binding P		4e-08
4hlu_D	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		3e-07
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		3e-07
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		3e-07
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		5e-07
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		6e-07
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		7e-07
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		9e-07
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		1e-06
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		1e-06
1g6h_A	257	Crystal Structure Of The Adp Conformation Of Mj1267		2e-06
1g9x_A	257	Characterization Of The Twinning Structure Of Mj126		2e-06
1g29_1	372	Malk Length = 372		2e-06
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		3e-06
1gaj_A	257	Crystal Structure Of A Nucleotide-Free Atp-Binding		3e-06
1yqt_A	538	Rnase-L Inhibitor Length = 538		3e-06
3bk7_A	607	Structure Of The Complete Abce1RNAASE-L Inhibitor P		5e-06
3j15_B	593	Model Of Ribosome-Bound Archaeal Pelota And Abce1 L		5e-06
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		6e-06
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		7e-06
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		1e-05
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		1e-05
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		3e-05
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		3e-05
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		4e-05
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		5e-05
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		5e-05
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		8e-05
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		8e-05
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		1e-04
3qku_A	359	Mre11 Rad50 Binding Domain In Complex With Rad50 An		2e-04
3qkt_A	339	Rad50 Abc-Atpase With Adjacent Coiled-Coil Region I		2e-04
1b0u_A	262	Atp-Binding Subunit Of The Histidine Permease From		2e-04
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		2e-04
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		3e-04
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		3e-04
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		3e-04
1ii8_B	174	Crystal Structure Of The P. Furiosus Rad50 Atpase D		4e-04
3qkr_B	179	Mre11 Rad50 Binding Domain Bound To Rad50 Length =		4e-04
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		4e-04
3ozx_A	538	Crystal Structure Of Abce1 Of Sulfolubus Solfataric		4e-04
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		5e-04
1f2t_B	148	Crystal Structure Of Atp-free Rad50 Abc-atpase Leng		5e-04
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		8e-04
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		9e-04

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 5/168 (2%)
Query: 371 KSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRT 430
           +  I Y P+       +   E+L F +      S  +  +V  +     LG      V T
Sbjct: 87  RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVST 146
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
            S G  RKL  A AL+ N  L  LDEPTSG+D    R +   +++A  EG  ++++SHNM
Sbjct: 147 YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM 206
Query: 491 EECEALCTKLTIMVNGQFTCLGSATHLKSKYG-----QGYSVKVRCAE 533
            E E LC ++ ++ NG     G+   LK +Y      + +   V+C+E
Sbjct: 207 LEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVKCSE 254

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 1/155 (0%)
Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV 428
           PQK  +G   Q  AL   +T  +++ F  R + +P   ++  V E L    L  Y++R  
Sbjct: 84  PQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP 143
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTS 487
             LSGG +++++ A AL     ++  DEP + +D   RR L T + +   E G   +  +
Sbjct: 144 HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVT 203
Query: 488 HNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYG 522
           H+ EE   +  ++ ++  G     G+   +  K G
Sbjct: 204 HDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPG 238

>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Query: 368 APQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNL--PSVLLNTIVNESLNKFALGHYSD 425
           +P+K  I +  Q  +L   +  +++LEF  R++ +  P  +L+T  +       + H  D
Sbjct: 68  SPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARD-----LKIEHLLD 122
Query: 426 REVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 485
           R   TLSGG +++++ A AL+ N  ++ LDEP S +DP  +      +     + +  +L
Sbjct: 123 RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 486 -TSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQG 524
             +H+  E   +  ++ ++++G+   +G    +  K  +G
Sbjct: 183 HITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEG 222

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 9/182 (4%)
Query: 345 CGSSVFLKNSFARGYYLSLDM--------KSAPQKSYIGYCPQFDALNDRLTPREHLEFY 396
           CG S  L+         S D+         + P +  +G   Q  AL   L+  E++ F 
Sbjct: 40  CGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFG 99
Query: 397 SRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDE 456
            ++      ++N  VN+      L H  DR+ + LSGG +++++    L+    +  LDE
Sbjct: 100 LKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 159
Query: 457 PTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 515
           P S +D   R  +   I R     GR +I  +H+  E   L  K+ ++  G+   +G   
Sbjct: 160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPL 219
Query: 516 HL 517
            L
Sbjct: 220 EL 221

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 9/182 (4%)
Query: 345 CGSSVFLKNSFARGYYLSLDM--------KSAPQKSYIGYCPQFDALNDRLTPREHLEFY 396
           CG S  L+         S D+         + P +  +G   Q  AL   L+  E++ F 
Sbjct: 40  CGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFG 99
Query: 397 SRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDE 456
            ++      ++N  VN+      L H  DR+ + LSGG +++++    L+    +  LDE
Sbjct: 100 LKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 159
Query: 457 PTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 515
           P S +D   R  +   I R     GR +I  +H+  E   L  K+ ++  G+   +G   
Sbjct: 160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPL 219
Query: 516 HL 517
            L
Sbjct: 220 EL 221

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 9/182 (4%)
Query: 345 CGSSVFLKNSFARGYYLSLDM--------KSAPQKSYIGYCPQFDALNDRLTPREHLEFY 396
           CG S  L+         S D+         + P +  +G   Q  AL   L+  E++ F 
Sbjct: 40  CGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFG 99
Query: 397 SRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDE 456
            ++      ++N  VN+      L H  DR+ + LSGG +++++    L+    +  LD+
Sbjct: 100 LKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQ 159
Query: 457 PTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 515
           P S +D   R  +   I R     GR +I  +H+  E   L  K+ ++  G+   +G   
Sbjct: 160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPL 219
Query: 516 HL 517
            L
Sbjct: 220 EL 221

>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 331 GDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQF-------DAL 383
           GD +A++       CG S  L      G +  +  K    +S IG+ PQF         L
Sbjct: 31  GDILAVLGQNG---CGKSTLL--DLLLGIHRPIQGKIEVYQS-IGFVPQFFSSPFAYSVL 84
Query: 384 NDRLTPRE-HLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTA 442
           +  L  R  H+  +++    P      +  ++L+   L H + RE  +LSGG ++ +  A
Sbjct: 85  DIVLMGRSTHINTFAK----PKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIA 140
Query: 443 IALLGNTPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTSHNMEECEALCTKLT 501
            A+     LI LDEPTS +D   +  + +  I+ A S+   V+ T+H   +  A+  K T
Sbjct: 141 RAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANK-T 199
Query: 502 IMVNGQ 507
           +++N Q
Sbjct: 200 LLLNKQ 205

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 402 LPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGM 461
           LP   +   V+ +L +  + H  D+    LS G K++++ A  L+    ++ LDEPT+G+
Sbjct: 115 LPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 462 DP-GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
           DP G    +   +E     G  +I+ +H+++     C  + +M  G+    G+   +
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231

>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 11/156 (7%)
Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRV----RNLPSVLLNTIVNESLNKFALGHYS 424
           P++  IG+ PQ  AL        HL  Y  +    RN+  V  +  V E   K  + H  
Sbjct: 67  PERRGIGFVPQDYALF------PHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL 120
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484
           DR+   LSGG +++++ A AL+    L+ LDEP S +D   +  L   +     E    I
Sbjct: 121 DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPI 180
Query: 485 L-TSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 519
           L  +H++ E   L  ++ +M+NG+    G    L S
Sbjct: 181 LHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216

>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 10/177 (5%)
Query: 337 IAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFY 396
           I AG L   G  +FL  S A  + L  ++       Y+   P    +    T  E + F 
Sbjct: 56  ILAGLLAAAGE-IFLDGSPADPFLLRKNV------GYVFQNPSSQIIG--ATVEEDVAFS 106
Query: 397 SRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDE 456
             +  L    +   + + L    L   +  +   LSGG K++L+ A  L  +T  + LDE
Sbjct: 107 LEIMGLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDE 166
Query: 457 PTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 513
           P S +DP ++R ++  +E   +EG+ +IL +H +E  + +   L I  NG     GS
Sbjct: 167 PVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHIS-NGTIDFCGS 222

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 50/99 (50%)
Query: 423 YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 482
           + DR    LSGG KR+++ A  ++    ++ LDEP  G+D   +  L   +E+  + G+ 
Sbjct: 131 FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKT 190
Query: 483 VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKY 521
           VIL SH++E       ++ ++  G+    G+      KY
Sbjct: 191 VILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 229

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 50/99 (50%)
Query: 423 YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 482
           + DR    LSGG KR+++ A  ++    ++ LDEP  G+D   +  L   +E+  + G+ 
Sbjct: 133 FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKT 192
Query: 483 VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKY 521
           VIL SH++E       ++ ++  G+    G+      KY
Sbjct: 193 VILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 231

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 4/162 (2%)
Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV 428
           P+   IG   Q  AL   LT  E++ F      +    +   V E      + H  +   
Sbjct: 79  PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP 138
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTS 487
           R LSGG +++++ A AL+ +  L+ LDEP S +D   R      ++   S  G  +++ S
Sbjct: 139 RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 488 HNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKV 529
           H+  +  A+  ++ ++V G+   +G    L   Y    S++V
Sbjct: 199 HDPADIFAIADRVGVLVKGKLVQVGKPEDL---YDNPVSIQV 237

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 401 NLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG 460
           N P   +   V E L+   LG   D     LSGG K++++ A AL  N  ++  DE TS 
Sbjct: 111 NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 461 MDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQF 508
           +DP   R +   ++      G  ++L +H M+  + +C  + ++ NG+ 
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 431  LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
            LSGG K++++ A AL+ N  ++ LDE TS +D  + + +   ++RA  EGR  I+ +H +
Sbjct: 1218 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRA-REGRTCIVIAHRL 1276
Query: 491  EEC-EALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSV 527
                 A C  + ++ NG     G+ T L S+ G  Y +
Sbjct: 1277 NTVMNADC--IAVVSNGTIIEKGTHTQLMSEKGAYYKL 1312

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 1/150 (0%)
Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV 428
           P+   +G   Q  AL   +T  E++ F  R R +    +   V E   K  + +  DR+ 
Sbjct: 72  PKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP 131
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTS 487
             LSGG +++++ A AL+    ++  DEP S +D   R  +   I+    E G   +  +
Sbjct: 132 TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVT 191
Query: 488 HNMEECEALCTKLTIMVNGQFTCLGSATHL 517
           H+  E   + +++ +   G+    G+   +
Sbjct: 192 HDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 4/174 (2%)
Query: 352 KNSFARGYYLSLDMKSAPQKSY-IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTI 410
           K +  + Y+   D+   P K   +G   Q  AL   +T  +++ F   +R  P   ++  
Sbjct: 54  KPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKK 113
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
           V E      +    +R    LSGG +++++ A AL+    ++ LDEP S +D   R  + 
Sbjct: 114 VREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVR 173
Query: 471 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA--THLKSKY 521
             ++R   E G   +  +H+  E  A+  ++ ++  G+   +G+    + K KY
Sbjct: 174 AELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKY 227

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 401 NLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG 460
           N P   +   V E L+   LG   D     LSGG K++++ A AL  N  ++  D+ TS 
Sbjct: 134 NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSA 193
Query: 461 MDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQF 508
           +DP   R +   ++      G  ++L +H M+  + +C  + ++ NG+ 
Sbjct: 194 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 242

>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 45/100 (45%)
Query: 415 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE 474
           L    L H  DR+   LSGG  + +    AL+ N  +I +DEP +G+ PG    ++  + 
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 475 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 514
              ++G   ++  H ++        L +M NGQ    G  
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 237

>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 45/100 (45%)
Query: 415 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE 474
           L    L H  DR+   LSGG  + +    AL+ N  +I +DEP +G+ PG    ++  + 
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 475 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 514
              ++G   ++  H ++        L +M NGQ    G  
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 237

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 1/153 (0%)
Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV 428
           P+   I    Q  AL   +T  +++ F  ++R +P   ++  V E      L    +R+ 
Sbjct: 78  PKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP 137
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTS 487
           R LSGG +++++   A++    +  +DEP S +D   R  +   +++   + G   I  +
Sbjct: 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVT 197
Query: 488 HNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 520
           H+  E   +  ++ +M  G    +GS   +  K
Sbjct: 198 HDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 4/162 (2%)
Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV 428
           P+   IG   Q  AL   LT  E++ F      +    +   V E      + H  +   
Sbjct: 79  PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP 138
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTS 487
           R LSG  +++++ A AL+ +  L+ LDEP S +D   R      ++   S  G  +++ S
Sbjct: 139 RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 488 HNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYSVKV 529
           H+  +  A+  ++ ++V G+   +G    L   Y    S++V
Sbjct: 199 HDPADIFAIADRVGVLVKGKLVQVGKPEDL---YDNPVSIQV 237

>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 45/100 (45%)
Query: 415 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE 474
           L    L H  DR+   LSGG  + +    AL+ N  +I +D+P +G+ PG    ++  + 
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVL 197
Query: 475 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 514
              ++G   ++  H ++        L +M NGQ    G  
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 237

>pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
           + E +    L +  +RE++ LSGG  ++++ A ALL N    F DEP+S +D   R    
Sbjct: 139 LEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAA 198
Query: 471 TCIERAVSEGRCVILTSHNM 490
             I R   EG+ V++  H++
Sbjct: 199 RAIRRLSEEGKSVLVVEHDL 218

>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484
           DRE+  LSGG  ++++ A ALL      F DEP+S +D   R  +   I R  +EG+ V+
Sbjct: 223 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282
Query: 485 LTSHNMEECEALCTKLTIM-----VNGQFTCLGSATHLKSKYGQGY 525
           +  H++   + L   + ++     V G F+      +  +++ QGY
Sbjct: 283 VVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGY 328

>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484
           DRE+  LSGG  ++++ A ALL      F DEP+S +D   R  +   I R  +EG+ V+
Sbjct: 209 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 268
Query: 485 LTSHNMEECEALCTKLTIM-----VNGQFTCLGSATHLKSKYGQGY 525
           +  H++   + L   + ++     V G F+      +  +++ QGY
Sbjct: 269 VVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGY 314

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484
           +R V+ LSGG K++LS A   L N P++ LDE TS +D  +   +   ++  +S+ R  +
Sbjct: 473 ERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALD-VLSKDRTTL 530
Query: 485 LTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYG 522
           + +H +        K+ ++ NG     G+   L +K G
Sbjct: 531 IVAHRLSTITH-ADKIVVIENGHIVETGTHRELIAKQG 567

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 401 NLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG 460
           N P   +   V E L+   LG   D     LSGG K++++ A AL  N  ++  D+ TS 
Sbjct: 134 NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSA 193
Query: 461 MDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQF 508
           +DP   R +   ++      G  ++L +H  +  + +C  + ++ NG+ 
Sbjct: 194 LDPATTRSILELLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGEL 242

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 80/182 (43%), Gaps = 9/182 (4%)
Query: 345 CGSSVFLK-------NSFARGYYLSLDMKSAPQKSY-IGYCPQFDALNDRLTPREHLEFY 396
           CG +  L+        +  R Y+   D+   P K   I    Q  A+   +T  E++ F 
Sbjct: 48  CGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFP 107
Query: 397 SRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDE 456
            +++  P   ++  V  +     +    +R    LSGG +++++ A A++    ++ +DE
Sbjct: 108 LKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE 167
Query: 457 PTSGMDPGARRFLWTCIERAVSEGRC-VILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 515
           P S +D   R  +   I++   + +   I  +H+  E   +  ++ +M  GQ   +GS T
Sbjct: 168 PLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPT 227
Query: 516 HL 517
            +
Sbjct: 228 EV 229

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 80/182 (43%), Gaps = 9/182 (4%)
Query: 345 CGSSVFLK-------NSFARGYYLSLDMKSAPQKSY-IGYCPQFDALNDRLTPREHLEFY 396
           CG +  L+        +  R Y+   D+   P K   I    Q  A+   +T  E++ F 
Sbjct: 49  CGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFP 108
Query: 397 SRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDE 456
            +++  P   ++  V  +     +    +R    LSGG +++++ A A++    ++ +DE
Sbjct: 109 LKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE 168
Query: 457 PTSGMDPGARRFLWTCIERAVSEGRC-VILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 515
           P S +D   R  +   I++   + +   I  +H+  E   +  ++ +M  GQ   +GS T
Sbjct: 169 PLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPT 228
Query: 516 HL 517
            +
Sbjct: 229 EV 230

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 16/122 (13%)
Query: 399 VRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPT 458
           +RN P    NT+V E   K  L          LSGG K++++ A ALL N  ++ LDE T
Sbjct: 497 IRNFPQGF-NTVVGE---KGVL----------LSGGQKQRIAIARALLKNPKILLLDEAT 542
Query: 459 SGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 518
           S +D      +   ++R + +GR V++ +H++   +     + ++  G+ T  G    L 
Sbjct: 543 SALDAENEYLVQEALDR-LMDGRTVLVIAHHLSTIKN-ANMVAVLDQGKITEYGKHEELL 600
Query: 519 SK 520
           SK
Sbjct: 601 SK 602

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 399 VRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPT 458
           +RN P    NT+V E   K  L          LSGG K++++ A ALL N  ++ LDE T
Sbjct: 466 IRNFPQGF-NTVVGE---KGVL----------LSGGQKQRIAIARALLKNPKILLLDEAT 511
Query: 459 SGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 518
           S +D      +   ++R + +GR V++ +H +   +     + ++  G+ T  G    L 
Sbjct: 512 SALDAENEYLVQEALDR-LMDGRTVLVIAHRLSTIKN-ANMVAVLDQGKITEYGKHEELL 569
Query: 519 SK 520
           SK
Sbjct: 570 SK 571

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 431  LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
            LSGG K++++ A AL+    ++ LDE TS +D  + + +   +++A  EGR  I+ +H +
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRL 1230
Query: 491  EECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYS-VKVRCAEGRS 536
               +     + ++ NG+    G+   L ++ G  +S V V+    RS
Sbjct: 1231 STIQN-ADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAKRS 1276

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
           LSGG +++++ A ALL ++P++ LDE TS +D  + R +   ++  + + R  ++ +H +
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQKNRTSLVIAHRL 539
Query: 491 EECEALCTKLTIMVNGQFTCLGSATHLKSKYG 522
              E    ++ ++ +G     G+ + L +++G
Sbjct: 540 STIEQ-ADEIVVVEDGIIVERGTHSELLAQHG 570

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 431  LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
            LSGG K++++ A AL+    ++ LDE TS +D  + + +   +++A  EGR  I+ +H +
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRL 1230
Query: 491  EECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYS-VKVRCAEGRS 536
               +     + ++ NG+    G+   L ++ G  +S V V+    RS
Sbjct: 1231 STIQN-ADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAKRS 1276

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 53/120 (44%)
Query: 398 RVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEP 457
           +VR  P         E L+K  L   +     +LSGG  ++++ A AL     ++  DEP
Sbjct: 106 KVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEP 165
Query: 458 TSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
           TS +DP     + + +++  +EG  +++ +H M     +  ++  M  G     G    L
Sbjct: 166 TSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 225

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 53/120 (44%)
Query: 398 RVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEP 457
           +VR  P         E L+K  L   +     +LSGG  ++++ A AL     ++  DEP
Sbjct: 127 KVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEP 186
Query: 458 TSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
           TS +DP     + + +++  +EG  +++ +H M     +  ++  M  G     G    L
Sbjct: 187 TSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 246

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 66/152 (43%), Gaps = 5/152 (3%)
Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV 428
           P++  +    Q  AL    T  +++ F  ++R +P   ++  V E      L    +R+ 
Sbjct: 81  PKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRKP 140
Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR---RFLWTCIERAVSEGRCVIL 485
           R LSGG +++++   A++    +   DEP S +D   R   R     ++R +  G   I 
Sbjct: 141 RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQL--GVTTIY 198
Query: 486 TSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
            +H+  E      ++ +   G+   +G+   +
Sbjct: 199 VTHDQVEAXTXGDRIAVXNKGELQQVGTPDEV 230

>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And Amp-Pnp Length = 359

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 418 FALGHYSDREVRTLSGGNK------RKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT 471
           F +    +R +  LSGG +       +L+ ++ L G   L+ LDEPT  +D   RR L T
Sbjct: 256 FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 315
Query: 472 CIERAVSEGRCVILTSHNME 491
            +ER + +   VIL SH+ E
Sbjct: 316 IMERYLKKIPQVILVSHDEE 335

>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In Complex With Amp- Pnp Length = 339

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 418 FALGHYSDREVRTLSGGNK------RKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT 471
           F +    +R +  LSGG +       +L+ ++ L G   L+ LDEPT  +D   RR L T
Sbjct: 236 FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 295
Query: 472 CIERAVSEGRCVILTSHNME 491
            +ER + +   VIL SH+ E
Sbjct: 296 IMERYLKKIPQVILVSHDEE 315

>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
           LSGG ++++S A AL     ++  DEPTS +DP     +   +++   EG+ +++ +H M
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 213
Query: 491 EECEALCTKLTIMVNGQFTCLG 512
                + + +  +  G+    G
Sbjct: 214 GFARHVSSHVIFLHQGKIEEEG 235

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
           LSGG +++++ A AL+ N  ++  DE TS +D  +   +   + + + +GR VI+ +H +
Sbjct: 142 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-ICKGRTVIIIAHRL 200
Query: 491 EECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYS 526
              +    ++ +M  G+    G    L S+    YS
Sbjct: 201 STVKN-ADRIIVMEKGKIVEQGKHKELLSEPESLYS 235

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
           LSGG +++++ A AL+ N  ++  DE TS +D  +   +   + + + +GR VI+ +H +
Sbjct: 142 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-ICKGRTVIIIAHRL 200
Query: 491 EECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYS 526
              +    ++ +M  G+    G    L S+    YS
Sbjct: 201 STVKN-ADRIIVMEKGKIVEQGKHKELLSEPESLYS 235

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
           LSGG +++++ A AL+ N  ++  DE TS +D  +   +   + + + +GR VI+ +H +
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-ICKGRTVIIIAHRL 198
Query: 491 EECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYS 526
              +    ++ +M  G+    G    L S+    YS
Sbjct: 199 STVKN-ADRIIVMEKGKIVEQGKHKELLSEPESLYS 233

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
           LSGG +++++ A AL+ N  ++  DE TS +D  +   +   + + + +GR VI+ +H +
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-ICKGRTVIIIAHRL 204
Query: 491 EECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYS 526
              +    ++ +M  G+    G    L S+    YS
Sbjct: 205 STVKN-ADRIIVMEKGKIVEQGKHKELLSEPESLYS 239

>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain Length = 174

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 418 FALGHYSDREVRTLSGGNK------RKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT 471
           F +    +R +  LSGG +       +L+ ++ L G   L+ LDEPT  +D   RR L T
Sbjct: 71  FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 130
Query: 472 CIERAVSEGRCVILTSHNME 491
            +ER + +   VIL SH+ E
Sbjct: 131 IMERYLKKIPQVILVSHDEE 150

>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50 Length = 179

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 418 FALGHYSDREVRTLSGGNK------RKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT 471
           F +    +R +  LSGG +       +L+ ++ L G   L+ LDEPT  +D   RR L T
Sbjct: 76  FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 135
Query: 472 CIERAVSEGRCVILTSHNME 491
            +ER + +   VIL SH+ E
Sbjct: 136 IMERYLKKIPQVILVSHDEE 155

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
           +LSGG +++++ A ALL + P++ LDE TS +D  + R +   ++  + + + V++ +H 
Sbjct: 480 SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE-LQKNKTVLVIAHR 538
Query: 490 MEECE 494
           +   E
Sbjct: 539 LSTIE 543

>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 14/196 (7%)
Query: 330 LGDRIAIIAAGKLQ------CCGSSVFLKNSFAR---GYYLSLDMKSAPQKSYIGYCPQF 380
           LGD   ++  G+ +        G +   K +FAR   G   + +    P+K  + Y PQ 
Sbjct: 279 LGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQR 338
Query: 381 DALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLS 440
              N   T +++LE  S+     S      V + LN   L    +  V  LSGG  +KL 
Sbjct: 339 IFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLN---LHRLLESNVNDLSGGELQKLY 395
Query: 441 TAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV-ILTSHNMEECEALCTK 499
            A  L     L  LD+P+S +D   R  +   I+R   E + V  +  H++   + +  +
Sbjct: 396 IAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADR 455
Query: 500 LTIMVNGQFTCLGSAT 515
           + I+  G+    G AT
Sbjct: 456 I-IVFKGEPEKAGLAT 470

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
           LSGG +++++ A ALL ++P++ LDE TS +D  + R +   ++  + + R  ++ +H +
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQKNRTSLVIAHRL 539
Query: 491 EECE 494
              E
Sbjct: 540 STIE 543

>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase Length = 148

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 418 FALGHYSDREVRTLSGGNK------RKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT 471
           F +    +R +  LSGG +       +L+ ++ L G   L+ LDEPT  +D   RR L T
Sbjct: 45  FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 104
Query: 472 CIERAVSEGRCVILTSHNME 491
            +ER + +   VIL SH+ E
Sbjct: 105 IMERYLKKIPQVILVSHDEE 124

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 422 HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-G 480
            +++ +   LSGG +++++ A AL  N P+I  DEPT  +D      +   +++   E G
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDG 196
Query: 481 RCVILTSHNM 490
           + V++ +H++
Sbjct: 197 KTVVVVTHDI 206

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 22/131 (16%)
Query: 397 SRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDE 456
           S V N+P   LNT V E            R V+ +SGG +++L+ A A L N  ++ LDE
Sbjct: 120 SFVENMPD-QLNTEVGE------------RGVK-ISGGQRQRLAIARAFLRNPKILMLDE 165
Query: 457 PTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS--- 513
            T+ +D  +   +   ++ ++ +GR  ++ +H +        K+  +  GQ T  G    
Sbjct: 166 ATASLDSESESMVQKALD-SLMKGRTTLVIAHRLSTI-VDADKIYFIEKGQITGSGKHNE 223
Query: 514 --ATH-LKSKY 521
             ATH L +KY
Sbjct: 224 LVATHPLYAKY 234

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	601
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	4e-47
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	6e-22
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	2e-21
1sgw_A	214	Putative ABC transporter; structural genomics, P p	1e-32
1sgw_A	214	Putative ABC transporter; structural genomics, P p	2e-16
1sgw_A	214	Putative ABC transporter; structural genomics, P p	9e-15
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	2e-21
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	2e-12
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	3e-08
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	3e-15
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	2e-13
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	4e-15
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	3e-14
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	2e-14
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	2e-08
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	6e-05
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	2e-04
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	2e-14
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	5e-08
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	3e-14
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	6e-11
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	2e-04
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	6e-04
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	2e-13
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	1e-06
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	5e-13
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	1e-11
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	1e-08
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	2e-11
1g6h_A	257	High-affinity branched-chain amino acid transport	2e-11
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	2e-10
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	6e-10
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	1e-05
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	2e-08
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	1e-06
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	2e-05
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	8e-05
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	1e-04
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	3e-04
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	9e-04

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score =  165 bits (419), Expect = 4e-47
 Identities = 48/154 (31%), Positives = 72/154 (46%)

Query: 371 KSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRT 430
           +  I Y P+       +   E+L F +      S  +  +V  +     LG      V T
Sbjct: 87  RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVST 146

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
            S G  RKL  A AL+ N  L  LDEPTSG+D    R +   +++A  EG  ++++SHNM
Sbjct: 147 YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM 206

Query: 491 EECEALCTKLTIMVNGQFTCLGSATHLKSKYGQG 524
            E E LC ++ ++ NG     G+   LK +Y   
Sbjct: 207 LEVEFLCDRIALIHNGTIVETGTVEELKERYKAQ 240

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 94.5 bits (236), Expect = 6e-22
 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 5/75 (6%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
            ILDEPTSG+D  + R + ++L +      S  G T+++++H M E + L DRIA+I  G
Sbjct: 168 AILDEPTSGLDVLNAREVRKILKQA-----SQEGLTILVSSHNMLEVEFLCDRIALIHNG 222

Query: 341 KLQCCGSSVFLKNSF 355
            +   G+   LK  +
Sbjct: 223 TIVETGTVEELKERY 237

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 93.4 bits (233), Expect = 2e-21
 Identities = 16/98 (16%), Positives = 38/98 (38%)

Query: 99  SMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV 158
            ++  ++  SSG   ++  ++  +   +R+ +   P+    +  +   E++ F +     
Sbjct: 59  RIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYAS 118

Query: 159 PKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD 196
                +  +       G+  K     +T S GM RKL 
Sbjct: 119 SSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLL 156

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score =  124 bits (313), Expect = 1e-32
 Identities = 22/138 (15%), Positives = 54/138 (39%), Gaps = 8/138 (5%)

Query: 371 KSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRT 430
           K  I + P+   +  +++  ++L+  + +  +        + ++L    +     + +  
Sbjct: 77  KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV--NKNEIMDALESVEVLDLKKK-LGE 133

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL-TSHN 489
           LS G  R++  A  LL N  +  LD+P   +D  ++  +   I   + E   VI+ +   
Sbjct: 134 LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE 193

Query: 490 MEECEALCTKLTIMVNGQ 507
           +  C+        +    
Sbjct: 194 LSYCD----VNENLHKYS 207

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 77.6 bits (192), Expect = 2e-16
 Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 7/97 (7%)

Query: 99  SMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV 158
             +   L    G        I      ++  +   P+   +  K++VE+++   + L  V
Sbjct: 53  KTISTYLKPLKGEIIYNGVPITK----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV 108

Query: 159 PKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
             +  + EI + +  + +   +  L   LS G  R++
Sbjct: 109 KVN--KNEIMDALESVEVLDLKKKL-GELSQGTIRRV 142

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 72.5 bits (179), Expect = 9e-15
 Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 8/62 (12%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
            +LD+P   +D  S+  + + ++++        G  +I +   +       D    +   
Sbjct: 155 YVLDDPVVAIDEDSKHKVLKSILEI----LKEKGIVIISSREELSYC----DVNENLHKY 206

Query: 341 KL 342
             
Sbjct: 207 ST 208

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 93.4 bits (233), Expect = 2e-21
 Identities = 33/183 (18%), Positives = 74/183 (40%), Gaps = 24/183 (13%)

Query: 371 KSYIGYCPQ--FDALNDRLTPRE--------HLEFYSRVRNLPSVLLNTIVNESLNKFAL 420
           + +IG+      +   +     +         +  Y          +    ++ L    +
Sbjct: 96  RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQD----IDDEIRNEAHQLLKLVGM 151

Query: 421 GHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEG 480
              + + +  LS G K+++  A AL+G   ++ LDEP +G+D  AR  L + ++      
Sbjct: 152 SAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSY 211

Query: 481 R--CVILTSHNMEECEALCTKLTIMVNGQFTCLGS------ATHLKSKYGQGYSVKVRCA 532
               +I  +H +EE  A  +K+ ++ +GQ    G+      + ++   + +  +V V+  
Sbjct: 212 PTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENMSRFFQK--NVAVQRW 269

Query: 533 EGR 535
             R
Sbjct: 270 NNR 272

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 67.2 bits (165), Expect = 2e-12
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
           ILDEP +G+D  +R S+  +L  +   S S     +I  TH+++E      +I ++  G+
Sbjct: 184 ILDEPAAGLDFIARESLLSILDSL---SDSYPTLAMIYVTHFIEEITANFSKILLLKDGQ 240

Query: 342 LQCCGS 347
               G+
Sbjct: 241 SIQQGA 246

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 9/106 (8%)

Query: 99  SMLMGMLPVSSGTAKIYDHDI---RTDMTTIRRSLGVCPQ--YNALFDKLTVEE--HMWF 151
           ++L    P +SGT  ++            T+R+ +G           +   V +      
Sbjct: 65  NILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGA 124

Query: 152 YSQLK--QVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
           +  +   Q   D  + E   ++  +G+  K       LS G ++++
Sbjct: 125 FKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRV 170

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 75.3 bits (186), Expect = 3e-15
 Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 411 VNESLNKFALG--HYSDREVRTLSGGNKRKLSTAIA--LLGNTPLIFLDEPTSGMDPGAR 466
           V +++    L    + DR    LSGG KR++  AIA  ++    ++ LDEP  G+D   +
Sbjct: 117 VKKAMEFVGLDFDSFKDRVPFFLSGGEKRRV--AIASVIVHEPDILILDEPLVGLDREGK 174

Query: 467 RFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 513
             L   +E+  + G+ VIL SH++E       ++ ++  G+    G+
Sbjct: 175 TDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT 221

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 69.9 bits (172), Expect = 2e-13
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK 341
           ILDEP  G+D   +  +  ++ K      +  G+TVIL +H ++      DR+ ++  GK
Sbjct: 161 ILDEPLVGLDREGKTDLLRIVEKW----KT-LGKTVILISHDIETVINHVDRVVVLEKGK 215

Query: 342 LQCCGS 347
               G+
Sbjct: 216 KVFDGT 221

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 74.9 bits (185), Expect = 4e-15
 Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%)

Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
           V+ +L +  + H  D+    LS G K++++ A  L+    ++ LDEPT+G+DP     + 
Sbjct: 124 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIM 183

Query: 471 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 513
             +     E G  +I+ +H+++     C  + +M  G+    G+
Sbjct: 184 KLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 72.6 bits (179), Expect = 3e-14
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 11/102 (10%)

Query: 265 VAV-TVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHY 323
           VA+  VL  M   P   +ILDEPT+G+DP     I +LL+++        G T+I+ TH 
Sbjct: 152 VAIAGVL-VME--P-KVLILDEPTAGLDPMGVSEIMKLLVEM----QKELGITIIIATHD 203

Query: 324 MDEADLLGDRIAIIAAGKLQCCGS--SVFLKNSFARGYYLSL 363
           +D   L  D + ++  G++   G+   VF +    R   L L
Sbjct: 204 IDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRL 245

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 75.1 bits (185), Expect = 2e-14
 Identities = 31/131 (23%), Positives = 53/131 (40%), Gaps = 4/131 (3%)

Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
           + Y PQ    N   T +++LE  S+     S   +    E   +  L    +  V  LSG
Sbjct: 332 LSYKPQRIFPNYDGTVQQYLENASKDALSTS---SWFFEEVTKRLNLHRLLESNVNDLSG 388

Query: 434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE 492
           G  +KL  A  L     L  LD+P+S +D   R  +   I+R   E      +  H++  
Sbjct: 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSI 448

Query: 493 CEALCTKLTIM 503
            + +  ++ + 
Sbjct: 449 HDYIADRIIVF 459

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 6/120 (5%)

Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
            +E      + +  +++   LSGG  ++L  A +LL    +   D+P+S +D   R  + 
Sbjct: 119 KDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMA 178

Query: 471 TCIERAVSEGRCVILTSHNMEECEALCTKLTIM-----VNGQFTCLGSATHLKSKYGQGY 525
             I R + + + VI+  H++   + L   + I+     V G+ +   +A    + + +GY
Sbjct: 179 KAI-RELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGY 237

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 6/56 (10%)

Query: 282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII 337
           I D+P+S +D   R ++ + + ++      L  + VI+  H +   D L D I II
Sbjct: 161 IFDQPSSYLDVRERMNMAKAIREL------LKNKYVIVVDHDLIVLDYLTDLIHII 210

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAI 336
            A   +LD+P+S +D   R  + + + +              +  H +   D + DRI +
Sbjct: 403 EADLYVLDQPSSYLDVEERYIVAKAIKR--VTRE--RKAVTFIIDHDLSIHDYIADRIIV 458

Query: 337 I 337
            
Sbjct: 459 F 459

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 75.4 bits (186), Expect = 2e-14
 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 5/131 (3%)

Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
           + Y PQ+       T  E             +  N    E L    +    DR V  LSG
Sbjct: 419 VAYKPQYIKAEYEGTVYEL--LSKIDS--SKLNSNFYKTELLKPLGIIDLYDRNVEDLSG 474

Query: 434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVILTSHNMEE 492
           G  ++++ A  LL +  +  LDEP++ +D   R  +   I        +  ++  H++  
Sbjct: 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 534

Query: 493 CEALCTKLTIM 503
            + +  +L + 
Sbjct: 535 IDYVSDRLIVF 545

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 54.6 bits (132), Expect = 5e-08
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 378 PQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKR 437
           PQ+  L  +    +  E   +V  +          E + +  L +  DRE+  LSGG  +
Sbjct: 182 PQYVDLLPKAVKGKVRELLKKVDEV------GKFEEVVKELELENVLDRELHQLSGGELQ 235

Query: 438 KLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
           +++ A ALL      F DEP+S +D   R  +   I R  +EG+ V++  H
Sbjct: 236 RVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH 286

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 74.7 bits (184), Expect = 3e-14
 Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 5/135 (3%)

Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
           +   PQ  A     T R+   F+ ++R     L      + +    +    D+EV+ LSG
Sbjct: 415 VSMKPQKIAPKFPGTVRQL--FFKKIRG--QFLNPQFQTDVVKPLRIDDIIDQEVQHLSG 470

Query: 434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE 492
           G  ++++  +AL     +  +DEP++ +D   R      I R +    +   +  H+   
Sbjct: 471 GELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIM 530

Query: 493 CEALCTKLTIMVNGQ 507
              L  K+ +     
Sbjct: 531 ATYLADKVIVFEGIP 545

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 64.3 bits (157), Expect = 6e-11
 Identities = 29/174 (16%), Positives = 60/174 (34%), Gaps = 13/174 (7%)

Query: 357 RGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLN 416
               L  D+K+  +  Y+           +   ++  E                V   + 
Sbjct: 156 FTKMLEDDIKAIIKPQYV----DNIPRAIKGPVQKVGELLKLRMEK----SPEDVKRYIK 207

Query: 417 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERA 476
              L +   R++  LSGG  ++ +  ++ +    +   DEP+S +D   R      I   
Sbjct: 208 ILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSL 267

Query: 477 VSEGRCVILTSHNMEECEALCTKLTIM-----VNGQFTCLGSATHLKSKYGQGY 525
           ++  + VI   H++   + L   + I+     V G  T   S     + +  G+
Sbjct: 268 LAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASVREGINIFLDGH 321

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAI 336
           PA   ++DEP++ +D   R    +++ +  +  H  + +T  +  H    A  L D++ +
Sbjct: 485 PADIYLIDEPSAYLDSEQRIICSKVIRR--FILH--NKKTAFIVEHDFIMATYLADKVIV 540

Query: 337 IAAGK 341
                
Sbjct: 541 FEGIP 545

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 10/72 (13%)

Query: 269 VLFAMSFVP-ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSL--SGRTVILTTHYMD 325
               MS V  A   + DEP+S +D   R +  +++        SL    + VI   H + 
Sbjct: 230 FAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQII-------RSLLAPTKYVICVEHDLS 282

Query: 326 EADLLGDRIAII 337
             D L D + II
Sbjct: 283 VLDYLSDFVCII 294

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 69.5 bits (171), Expect = 2e-13
 Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 14/150 (9%)

Query: 374 IGYCPQFDALNDRLTPRE--------HLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSD 425
           IG+ PQF +     +  +        H+  +++    P      +  ++L+   L H + 
Sbjct: 68  IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAK----PKSHDYQVAMQALDYLNLTHLAK 123

Query: 426 REVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVI 484
           RE  +LSGG ++ +  A A+     LI LDEPTS +D   +  + + +   A S+   V+
Sbjct: 124 REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVV 183

Query: 485 LTSHNMEECEALCTKLTIMVNGQFTCLGSA 514
            T+H   +  A+  K  +++N Q    G  
Sbjct: 184 FTTHQPNQVVAIANKT-LLLNKQNFKFGET 212

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 10/79 (12%)

Query: 269 VLFAMSFV-PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA 327
           +L A +       ++LDEPTS +D  ++  +  LLI +  +       TV+ TTH  ++ 
Sbjct: 137 ILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ----NMTVVFTTHQPNQV 192

Query: 328 DLLGDRIA-----IIAAGK 341
             + ++           G+
Sbjct: 193 VAIANKTLLLNKQNFKFGE 211

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 68.5 bits (168), Expect = 5e-13
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 10/139 (7%)

Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG-HYSDRE 427
               Y    P+   +   +T  + +  Y  ++ L       +  E L    LG     R+
Sbjct: 72  NYIRYSTNLPEAYEIG--VTVNDIVYLYEELKGLD----RDLFLEMLKALKLGEEILRRK 125

Query: 428 VRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS 487
           +  LS G    + T++AL     ++ LDEP   +D   R  +   I+     G+  IL +
Sbjct: 126 LYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKE---YGKEGILVT 182

Query: 488 HNMEECEALCTKLTIMVNG 506
           H ++            + G
Sbjct: 183 HELDMLNLYKEYKAYFLVG 201

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 10/82 (12%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           V LDEP   VD   R  I   + +         G+  IL TH +D  +L  +  A    G
Sbjct: 150 VGLDEPFENVDAARRHVISRYIKEY--------GKEGILVTHELDMLNLYKEYKAYFLVG 201

Query: 341 -KLQCCGS-SVFLKNSFARGYY 360
            +LQ   S S  L++S   G  
Sbjct: 202 NRLQGPISVSELLESSIVEGER 223

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.2 bits (163), Expect = 1e-11
 Identities = 79/538 (14%), Positives = 162/538 (30%), Gaps = 167/538 (31%)

Query: 11  YDVTQLIRSFLPAANIHKISGSEVTYVLPQDPASMGAYVSLFESLSENR---------DK 61
            DV  + +S L        S  E+ +++    A  G    LF +L   +         + 
Sbjct: 36  KDVQDMPKSIL--------SKEEIDHIIMSKDAVSGTLR-LFWTLLSKQEEMVQKFVEEV 86

Query: 62  LGIDSYGISDTSLEEQPLGPSGITLG-------LHTLGLEF----VSR--------SMLM 102
           L I+ Y    + ++ +   PS +T         L+     F    VSR          L+
Sbjct: 87  LRIN-YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145

Query: 103 -----------GMLPVSSGTAK-------IYDHDIRTDMTT----IRRSLGVCPQYNALF 140
                      G+L    G+ K          + ++  M      +  +L  C     + 
Sbjct: 146 ELRPAKNVLIDGVL----GSGKTWVALDVCLSYKVQCKMDFKIFWL--NLKNCNSPETVL 199

Query: 141 DKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRK------ 194
           + L          Q+   P   ++ + S+      I  +  S+   L   ++ K      
Sbjct: 200 EMLQK-----LLYQID--PNWTSRSDHSS-----NIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 195 --LDNV---KVW--FNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLT 247
             L NV   K W  FN    I   +         L A+  +++S D        H M LT
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTT-RFKQVTDFLSAATTTHISLDH-------HSMTLT 299

Query: 248 HKQMALETL-KKAGTSI----LVAVTVL-FAMSFVPASTVILDEPTSGVDPYSRRSIWEL 301
             +     L K             +T     +S +  S   + +  +  D +   +  +L
Sbjct: 300 PDE-VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES---IRDGLATWDNWKHVNCDKL 355

Query: 302 --LIKVYYASHSLSGRTVILTTHYMDEA------------------DLLGDRIAIIAAGK 341
             +I+       L          +   +                  D++   + ++    
Sbjct: 356 TTIIESSLN--VLE--PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN-- 409

Query: 342 LQCCGSSVFLKNSFARGYYL-SLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVR 400
            +    S+  K        + S+ ++   +           AL+  +     ++ Y+  +
Sbjct: 410 -KLHKYSLVEKQPKESTISIPSIYLELKVK------LENEYALHRSI-----VDHYNIPK 457

Query: 401 NLPSVLLNTIVNESLNK---FALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLD 455
              S   + ++   L++     +GH+       L      +    + L     ++FLD
Sbjct: 458 TFDS---DDLIPPYLDQYFYSHIGHH-------LKNIEHPER---MTLF---RMVFLD 499

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 4e-06
 Identities = 49/370 (13%), Positives = 118/370 (31%), Gaps = 96/370 (25%)

Query: 148 HMWF-YSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKA 206
           HM F   + +   KD+  +     + +      +    + LS   + ++D++ +  +  +
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS---KEEIDHIIMSKDAVS 62

Query: 207 ------WIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAG 260
                 W      ++    ++ +      V R +Y  +            +  E  + + 
Sbjct: 63  GTLRLFWT----LLSKQEEMVQKFV--EEVLRINYKFLM---------SPIKTEQRQPSM 107

Query: 261 TSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIW--ELLIKVYYASHSL-SGRTV 317
                 +T ++            D   +    +++ ++   +  +K+  A   L   + V
Sbjct: 108 ------MTRMYIEQ--------RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153

Query: 318 ILTTHYMDEADLLGDRIAIIAAGK----LQCCGSSVFLKNSFARGYYLSLDMKSAP---- 369
           ++    +     LG       +GK    L  C S         + ++L+L   ++P    
Sbjct: 154 LI--DGV-----LG-------SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 370 ---QKSYIGYCPQFDALNDRL-TPREHLE-FYSRVRNL------PSVLLNTIV-----NE 413
              QK      P + + +D     +  +    + +R L       + LL  ++      +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQNAK 257

Query: 414 SLNKFALGHYSDREVRTL--SGGNKRKLSTAIALLGNTPL-IFLDEPTSGMDPG-ARRFL 469
           + N F L        + L  +    R       L   T   I LD  +  + P   +  L
Sbjct: 258 AWNAFNLS------CKILLTT----RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 470 WTCIERAVSE 479
              ++    +
Sbjct: 308 LKYLDCRPQD 317

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 5e-06
 Identities = 75/534 (14%), Positives = 144/534 (26%), Gaps = 205/534 (38%)

Query: 111 TAKIYDH--DIRTDMTTIRRSLGVCPQYNALFDKLTVEEHM-----WFYSQLKQVPKD-- 161
           + +  DH    +  ++   R             +  VEE +     +  S +K   +   
Sbjct: 47  SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106

Query: 162 -------------------------------------LAQLEISNMI---GDLGIPHKRT 181
                                                L +L  +  +   G LG    +T
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS--GKT 164

Query: 182 SLANT--LSGGMQRKLDNVKV-WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIV 238
            +A    LS  +Q K+D  K+ W N K   +  + +     ++ +   P+  SR D    
Sbjct: 165 WVALDVCLSYKVQCKMDF-KIFWLNLKNCNSPETVLEMLQKLLYQID-PNWTSRSD---- 218

Query: 239 AINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSI 298
              H  N+  +   + +++         +  L          ++L       +  + +  
Sbjct: 219 ---HSSNIKLR---IHSIQA-------ELRRLLKSKPYENCLLVLL------NVQNAK-A 258

Query: 299 WELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARG 358
           W           +LS + ++ TT +    D L                       S A  
Sbjct: 259 WNAF--------NLSCKILL-TTRFKQVTDFL-----------------------SAATT 286

Query: 359 YYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRN-----LPSV------LL 407
            ++SLD  S                   LTP E      +  +     LP          
Sbjct: 287 THISLDHHSMT-----------------LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329

Query: 408 NTIVNESL-------------NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFL 454
            +I+ ES+             N   L    +  +  L     RK+   ++       +F 
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-------VFP 382

Query: 455 DE---PTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCL 511
                PT  +       +W  + +                +   +  KL           
Sbjct: 383 PSAHIPTILLS-----LIWFDVIK---------------SDVMVVVNKL----------- 411

Query: 512 GSATHLKSKYGQGYSVKVRCAEGRSADAQTYLSLNLPVADLVETHATQL-QYRI 564
               H  S       V+ +  E   +    YL L + + +    H + +  Y I
Sbjct: 412 ----HKYS------LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 5/131 (3%)

Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSG 433
           + Y PQ+   +   T  E             +  N    E L    +    DREV  LSG
Sbjct: 349 VAYKPQYIKADYEGTVYE--LLSKIDA--SKLNSNFYKTELLKPLGIIDLYDREVNELSG 404

Query: 434 GNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVILTSHNMEE 492
           G  ++++ A  LL +  +  LDEP++ +D   R  +   I        +  ++  H++  
Sbjct: 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 464

Query: 493 CEALCTKLTIM 503
            + +  +L + 
Sbjct: 465 IDYVSDRLMVF 475

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 6/113 (5%)

Query: 378 PQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKR 437
           PQ+  L  +    + +E       L        + E +    L +  +RE++ LSGG  +
Sbjct: 112 PQYVDLIPKAVKGKVIE------LLKKADETGKLEEVVKALELENVLEREIQHLSGGELQ 165

Query: 438 KLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 490
           +++ A ALL N    F DEP+S +D   R      I R   EG+ V++  H++
Sbjct: 166 RVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL 218

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 64.7 bits (157), Expect = 2e-11
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 6/73 (8%)

Query: 425 DREVRTLSGGNKR------KLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVS 478
           +R +  LSGG +       +L+ ++ L G   L+ LDEPT  +D   RR L T +ER + 
Sbjct: 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 302

Query: 479 EGRCVILTSHNME 491
           +   VIL SH+ E
Sbjct: 303 KIPQVILVSHDEE 315

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 26/95 (27%), Positives = 45/95 (47%)

Query: 413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTC 472
           + L    L H  DR+   LSGG  + +    AL+ N  +I +DEP +G+ PG    ++  
Sbjct: 136 KILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH 195

Query: 473 IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 507
           +    ++G   ++  H ++        L +M NGQ
Sbjct: 196 VLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQ 230

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 9/118 (7%)

Query: 381 DALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYS-DREVRTLSGGNK--- 436
            AL+         E ++         +     E+  +  +     +R +  LSGG +   
Sbjct: 9   AALS--KIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIAL 66

Query: 437 ---RKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 491
               +L+ ++ L G   L+ LDEPT  +D   RR L T +ER + +   VIL SH+ E
Sbjct: 67  GLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 124

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 61.6 bits (149), Expect = 6e-10
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 424 SDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRC 482
           S   +R LSGG K KL  A        LI LDEPT+ +D  +   L     +A+ E    
Sbjct: 895 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGAL----SKALKEFEGG 950

Query: 483 VILTSHNMEECEALCTKLTIMVNGQFT 509
           VI+ +H+ E  + L  ++  + +G+ T
Sbjct: 951 VIIITHSAEFTKNLTEEVWAVKDGRMT 977

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-V 483
              +  LSGG K KL+ A A+L N  ++ LDEPT+ +D     +L       ++      
Sbjct: 543 AMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWL----VNYLNTCGITS 598

Query: 484 ILTSHNMEECEALCTKLTIMVNGQFT 509
           I  SH+    + +C  +      +  
Sbjct: 599 ITISHDSVFLDNVCEYIINYEGLKLR 624

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 54.5 bits (132), Expect = 2e-08
 Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 15/139 (10%)

Query: 410 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP-------LIFLDEPTSGMD 462
           ++N+     AL     R    LSGG  +++  A  +L  TP       L+ LDEP + +D
Sbjct: 106 LLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD 165

Query: 463 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS------ATH 516
              +  L   +     +G  ++++SH++        +  ++  G+    G         +
Sbjct: 166 VAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 225

Query: 517 LKSKYGQGYSVKVRCAEGR 535
           L   Y  G + +    EG 
Sbjct: 226 LAQAY--GMNFRRLDIEGH 242

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 8/87 (9%)

Query: 412 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL-------LGNTPLIFLDEPTSGMDPG 464
            +              +  LSGG +  ++ ++ L             I LDEPT  +D  
Sbjct: 262 TKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDEN 321

Query: 465 ARRFLWTCIERAVSEGRCVILTSHNME 491
            R  L     + V     +I+ +H+ E
Sbjct: 322 RRAKLAEIFRK-VKSIPQMIIITHHRE 347

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 426 REVRTLSGGNKRKLSTAIAL------LGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE 479
           R  R LSGG +  +S ++A+       G     F+DE  S +D   +  + + ++     
Sbjct: 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL 334

Query: 480 GRCVILTSH 488
            + ++  +H
Sbjct: 335 NKVIVFITH 343

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 43.7 bits (104), Expect = 8e-05
 Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 11/114 (9%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
           LGP+G   G     LE     ++ G++    G  ++   DI T +   RR +G  PQ  A
Sbjct: 30  LGPTGA--GKSVF-LE-----LIAGIVKPDRGEVRLNGADI-TPLPPERRGIGFVPQDYA 80

Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQ 192
           LF  L+V  ++ +   L+ V +      +  M   LGI H        LSGG +
Sbjct: 81  LFPHLSVYRNIAY--GLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGER 132

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL 342
           D+ TS +DP + RSI ELL  +   +  L G T++L TH MD    + D +A+I+ G+L
Sbjct: 188 DQATSALDPATTRSILELLKDI---NRRL-GLTILLITHEMDVVKRICDCVAVISNGEL 242

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
            LSGG K++++ A AL+ N  ++ LDE TS +D  +   +   +++A  EGR  I+ +H
Sbjct: 526 QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA-REGRTTIVIAH 583

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 40.7 bits (96), Expect = 9e-04
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
           LSGG K++++ A  +L    +I LDE TS +D    R +   + + V   R  I+ +H
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK-VCANRTTIVVAH 247

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	601
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	100.0
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	100.0
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	100.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	100.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	100.0
2ghi_A	260	Transport protein; multidrug resistance protein, M	100.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	100.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	100.0
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.98
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.98
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.98
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.97
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.97
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.97
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.97
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.97
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.97
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.97
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.97
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.97
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.97
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.96
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.96
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.96
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.96
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.96
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.96
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.96
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.95
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.95
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.95
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.95
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.94
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.94
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.94
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.94
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.94
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.93
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.91
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.91
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.91
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.9
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.89
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.88
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.83
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.82
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.8
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.8
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.79
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.79
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.77
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.76
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.75
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.74
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.74
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.71
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.7
2og2_A	359	Putative signal recognition particle receptor; nuc	99.7
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.66
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.66
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.65
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.64
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.63
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.63
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.63
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.62
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.61
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.6
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.59
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.56
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.54
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.53
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.53
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.53
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.53
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.51
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.5
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.5
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.5
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.48
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.47
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.46
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.46
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.45
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.44
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.43
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.39
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.39
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.37
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.37
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.37
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.35
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.31
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.3
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.27
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.27
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.25
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.24
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.23
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.2
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.2
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.17
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.17
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.16
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.15
2og2_A	359	Putative signal recognition particle receptor; nuc	99.14
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.14
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.12
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.09
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.09
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.09
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.08
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.08
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.07
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.06
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.05
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.04
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.01
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.01
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.98
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.97
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.92
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.91
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.86
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.86
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.85
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.84
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.84
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.84
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.84
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.83
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.83
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.83
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.83
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.83
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.82
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.78
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.77
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.77
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.77
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.76
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.71
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.69
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.68
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.68
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.65
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.62
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.62
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.59
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.58
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.56
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.52
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.5
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.41
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.39
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.36
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.35
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.32
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.29
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.29
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.24
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.23
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	98.2
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.19
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.18
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.14
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.12
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.11
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	98.08
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.07
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.02
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.01
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.97
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.97
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.87
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.85
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.84
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.81
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.71
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.68
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.68
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.66
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.6
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.6
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.56
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.51
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.51
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	97.5
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.44
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.42
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.25
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.24
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.2
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.12
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.1
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.09
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.06
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	96.99
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	96.96
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.95
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.93
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.93
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	96.9
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.86
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.72
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.66
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.63
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	96.38
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.32
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.28
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.18
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.11
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.05
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	95.97
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	95.88
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	95.82
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	95.81
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	95.77
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	95.64
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	95.59
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.54
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	95.51
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.47
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	95.16
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.1
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	94.97
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	94.9
3kta_A	182	Chromosome segregation protein SMC; structural mai	94.82
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	94.81
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	94.73
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	94.7
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	94.65
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	94.53
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	94.39
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	94.35
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	94.04
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	94.03
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	94.02
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	93.86
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	93.64
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	93.48
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	93.35
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	93.34
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	92.08
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	91.95
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	91.27
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	91.12
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	91.1
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	90.86
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	90.81
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	90.11
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	89.96
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	89.85
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	89.75
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	89.33
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	89.18
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	89.1
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	88.4
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	87.57
1p9r_A	418	General secretion pathway protein E; bacterial typ	87.39
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	86.81
2z43_A	324	DNA repair and recombination protein RADA; archaea	86.78
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	86.74
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	86.68
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	86.51
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	86.26
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	86.19
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	85.88
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	85.19
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	82.91
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	82.45
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	82.14
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	81.91
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	80.99
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	80.54
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	80.51

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=1.3e-58  Score=516.83  Aligned_cols=364  Identities=19%  Similarity=0.237  Sum_probs=276.7

Q ss_pred             cccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEE---------EEccc
Q psy7365          53 ESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTA---------KIYDH  117 (601)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v---------~~~g~  117 (601)
                      +||+|.|++.   ..+++|+| ++.+      +|||||  |||||      .++|+|+++|++|++         .++|.
T Consensus        25 ~~ls~~yg~~---~~~l~~vs-~i~~Ge~~~LvG~NGa--GKSTL------lk~l~Gl~~p~~G~~~~~~~~~~~~~~g~   92 (538)
T 1yqt_A           25 EDCVHRYGVN---AFVLYRLP-VVKEGMVVGIVGPNGT--GKSTA------VKILAGQLIPNLCGDNDSWDGVIRAFRGN   92 (538)
T ss_dssp             CCEEEECSTT---CCEEECCC-CCCTTSEEEEECCTTS--SHHHH------HHHHHTSSCCCTTTTCCSHHHHHHHTTTS
T ss_pred             cCcEEEECCc---cccccCcC-cCCCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCCccCcchhhhHHhhCCc
Confidence            6899998642   24899999 8877      999999  56665      579999999999995         34565


Q ss_pred             cCCCch---HHhcccEEEEccCCCCCCC---CCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHH
Q psy7365         118 DIRTDM---TTIRRSLGVCPQYNALFDK---LTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGM  191 (601)
Q Consensus       118 ~~~~~~---~~~~~~ig~v~Q~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~  191 (601)
                      ++....   ...+..+++++|+..+++.   .|+.|++...         +..+++.++++.+|+.+..++++.+|||||
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~---------~~~~~~~~~l~~lgl~~~~~~~~~~LSgGe  163 (538)
T 1yqt_A           93 ELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA---------DETGKLEEVVKALELENVLEREIQHLSGGE  163 (538)
T ss_dssp             THHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH---------CSSSCHHHHHHHTTCTTTTTSBGGGCCHHH
T ss_pred             cHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh---------hHHHHHHHHHHHcCCChhhhCChhhCCHHH
Confidence            542111   1123468999998654332   3898887531         112357889999999999999999999999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      ||||+|||||                                      +.+                             
T Consensus       164 kQRv~iAraL--------------------------------------~~~-----------------------------  176 (538)
T 1yqt_A          164 LQRVAIAAAL--------------------------------------LRN-----------------------------  176 (538)
T ss_dssp             HHHHHHHHHH--------------------------------------HSC-----------------------------
T ss_pred             HHHHHHHHHH--------------------------------------hcC-----------------------------
Confidence            9999865433                                      233                             


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc------
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC------  345 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~------  345 (601)
                            |++|||||||++||+.++..++++|+++.     ..|+|||++|||++++..+|||+++|.+|.....      
T Consensus       177 ------P~lLlLDEPTs~LD~~~~~~l~~~L~~l~-----~~g~tvi~vsHd~~~~~~~~dri~vl~~~~~~~~~~~~~~  245 (538)
T 1yqt_A          177 ------ATFYFFDEPSSYLDIRQRLNAARAIRRLS-----EEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPK  245 (538)
T ss_dssp             ------CSEEEEESTTTTCCHHHHHHHHHHHHHHH-----HTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred             ------CCEEEEECCcccCCHHHHHHHHHHHHHHH-----hcCCEEEEEeCCHHHHHHhCCEEEEEcCcccccccccchh
Confidence                  58999999999999999999999999983     2589999999999999999999999975421100      


Q ss_pred             -----------c-----------C-------c--------ccc--cc---ccc------------cccc---cccccC--
Q psy7365         346 -----------G-----------S-------S--------VFL--KN---SFA------------RGYY---LSLDMK--  366 (601)
Q Consensus       346 -----------G-----------~-------~--------~lL--k~---~~g------------~g~~---igld~~--  366 (601)
                                 +           .       .        ..+  ++   .++            .|..   +|.++.  
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGK  325 (538)
T 1yqt_A          246 GTRNGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGK  325 (538)
T ss_dssp             EHHHHHHHHHHTEETTTTEECSSSCCCCCCSSGGGSSCCCEEEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSH
T ss_pred             hHHHHHHHHhhhccchhhhcccccccccccCCcccccCCCeEEEEeeEEEEECCEEEEeCccccCCCCEEEEECCCCCCH
Confidence                       0           0       0        000  00   000            0000   010100  


Q ss_pred             ------------C----cccccccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCc
Q psy7365         367 ------------S----APQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRT  430 (601)
Q Consensus       367 ------------~----~~~~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~  430 (601)
                                  .    .....++||+||++..++.+||.|++...... ...   ..+.++++++.+++.+..++++.+
T Consensus       326 STLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~~~l~~~~~~~~~~  401 (538)
T 1yqt_A          326 TTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDAS-KLN---SNFYKTELLKPLGIIDLYDREVNE  401 (538)
T ss_dssp             HHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHH-HHT---CHHHHHHTTTTTTCGGGTTSBGGG
T ss_pred             HHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhcc-CCC---HHHHHHHHHHHcCChhhhcCChhh
Confidence                        0    00134689999998877889998887653111 111   134578899999999899999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccChhHHHhhCCEEEEEeC--CE
Q psy7365         431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVN--GQ  507 (601)
Q Consensus       431 LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~-~G~tVllsTHdl~e~~~l~drv~iL~~--G~  507 (601)
                      |||||||||+||+||+.+|++|||||||+|||+.++..++++|+++++ .|+|||++|||++++..+||||++|++  |+
T Consensus       402 LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~  481 (538)
T 1yqt_A          402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGK  481 (538)
T ss_dssp             CCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTT
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcce
Confidence            999999999999999999999999999999999999999999999864 599999999999999999999999986  78


Q ss_pred             EEEecCHHHHHH
Q psy7365         508 FTCLGSATHLKS  519 (601)
Q Consensus       508 iv~~G~~~~L~~  519 (601)
                      +.+.|+|+++..
T Consensus       482 ~~~~g~~~~~~~  493 (538)
T 1yqt_A          482 YGRALPPMGMRE  493 (538)
T ss_dssp             EEEECCCEEHHH
T ss_pred             EeecCCHHHHHh
Confidence            889999988764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=4.3e-58  Score=518.51  Aligned_cols=364  Identities=19%  Similarity=0.246  Sum_probs=277.3

Q ss_pred             cccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEE---------EEccc
Q psy7365          53 ESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTA---------KIYDH  117 (601)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v---------~~~g~  117 (601)
                      ++|++.|+..   ..+++|+| ++.+      +|||||  |||||      .++|+|+++|++|++         .++|.
T Consensus        95 ~~ls~~yg~~---~~~l~~vs-~i~~Ge~~~LiG~NGs--GKSTL------lkiL~Gll~p~~G~~~~~~~~~~~~~~G~  162 (607)
T 3bk7_A           95 EDCVHRYGVN---AFVLYRLP-IVKDGMVVGIVGPNGT--GKTTA------VKILAGQLIPNLCEDNDSWDNVIRAFRGN  162 (607)
T ss_dssp             GSEEEECSTT---CCEEECCC-CCCTTSEEEEECCTTS--SHHHH------HHHHTTSSCCCTTTTCCCHHHHHHHTTTS
T ss_pred             CCeEEEECCC---CeeeCCCC-CCCCCCEEEEECCCCC--hHHHH------HHHHhCCCCCCCCccccccchhhheeCCE
Confidence            7888888532   24899999 8766      999999  56655      579999999999996         34565


Q ss_pred             cCCCch---HHhcccEEEEccCCCCCC---CCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHH
Q psy7365         118 DIRTDM---TTIRRSLGVCPQYNALFD---KLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGM  191 (601)
Q Consensus       118 ~~~~~~---~~~~~~ig~v~Q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~  191 (601)
                      ++....   ...+..+++++|+..+++   ..||.||+.+.    .     ..++++++++.+||++..++++.+|||||
T Consensus       163 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~----~-----~~~~~~~~L~~lgL~~~~~~~~~~LSGGe  233 (607)
T 3bk7_A          163 ELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV----D-----EVGKFEEVVKELELENVLDRELHQLSGGE  233 (607)
T ss_dssp             THHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT----C-----CSSCHHHHHHHTTCTTGGGSBGGGCCHHH
T ss_pred             ehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh----H-----HHHHHHHHHHHcCCCchhCCChhhCCHHH
Confidence            542211   112346899999854322   23999998641    1     12357789999999999999999999999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      ||||+|||||                                      +++                             
T Consensus       234 kQRvaIAraL--------------------------------------~~~-----------------------------  246 (607)
T 3bk7_A          234 LQRVAIAAAL--------------------------------------LRK-----------------------------  246 (607)
T ss_dssp             HHHHHHHHHH--------------------------------------HSC-----------------------------
T ss_pred             HHHHHHHHHH--------------------------------------hcC-----------------------------
Confidence            9999865433                                      233                             


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccc-------
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQC-------  344 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~-------  344 (601)
                            |++|||||||++||+.++..++++|+++.     ..|+|||++|||++++..+|||+++|.++....       
T Consensus       247 ------P~lLlLDEPTs~LD~~~~~~l~~~L~~l~-----~~g~tvIivsHdl~~~~~~adri~vl~~~~~~~g~~~~~~  315 (607)
T 3bk7_A          247 ------AHFYFFDEPSSYLDIRQRLKVARVIRRLA-----NEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPK  315 (607)
T ss_dssp             ------CSEEEEECTTTTCCHHHHHHHHHHHHHHH-----HTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCE
T ss_pred             ------CCEEEEECCcccCCHHHHHHHHHHHHHHH-----hcCCEEEEEecChHHHHhhCCEEEEECCCccccceeccch
Confidence                  58999999999999999999999999983     258999999999999999999999997542110       


Q ss_pred             ----------cc---------C---------c--------ccc--cc---ccc------------cccc---ccccc---
Q psy7365         345 ----------CG---------S---------S--------VFL--KN---SFA------------RGYY---LSLDM---  365 (601)
Q Consensus       345 ----------~G---------~---------~--------~lL--k~---~~g------------~g~~---igld~---  365 (601)
                                .+         .         .        ..+  ++   .++            .|..   +|-++   
T Consensus       316 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~l~~~~~~v~~Gei~~i~G~NGsGK  395 (607)
T 3bk7_A          316 GTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK  395 (607)
T ss_dssp             EHHHHHHHHHHTEETTTTEECCSSCCCCCCSTTSCCCCCCEEEEECCEEEECSSCEEEECCEEEETTCEEEEECCTTSSH
T ss_pred             hHHHHHHHHHhhcchhhhhhccccccccccCCCcccccCceEEEEeceEEEecceEEEecccccCCCCEEEEECCCCCCH
Confidence                      00         0         0        000  00   000            0000   01000   


Q ss_pred             -----------CC----cccccccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCc
Q psy7365         366 -----------KS----APQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRT  430 (601)
Q Consensus       366 -----------~~----~~~~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~  430 (601)
                                 ..    .....++||+||++.+++.+||.|++.+.... ..   ...+++.++++.+++.+..++++.+
T Consensus       396 STLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~-~~---~~~~~~~~~l~~~~l~~~~~~~~~~  471 (607)
T 3bk7_A          396 TTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSS-KL---NSNFYKTELLKPLGIIDLYDRNVED  471 (607)
T ss_dssp             HHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHH-HH---HCHHHHHHTHHHHTCTTTTTSBGGG
T ss_pred             HHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhcc-CC---CHHHHHHHHHHHcCCchHhcCChhh
Confidence                       00    00135699999998877889999988654110 00   1134678899999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccChhHHHhhCCEEEEEeC--CE
Q psy7365         431 LSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVILTSHNMEECEALCTKLTIMVN--GQ  507 (601)
Q Consensus       431 LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~-~~G~tVllsTHdl~e~~~l~drv~iL~~--G~  507 (601)
                      |||||||||+||+||+.+|++|||||||+|||+.++..++++|+++. ++|+|||++|||++++..+|||+++|++  |+
T Consensus       472 LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~  551 (607)
T 3bk7_A          472 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGR  551 (607)
T ss_dssp             CCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTT
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcce
Confidence            99999999999999999999999999999999999999999999986 4699999999999999999999999986  88


Q ss_pred             EEEecCHHHHHH
Q psy7365         508 FTCLGSATHLKS  519 (601)
Q Consensus       508 iv~~G~~~~L~~  519 (601)
                      +.+.|+|+++..
T Consensus       552 ~~~~g~p~~~~~  563 (607)
T 3bk7_A          552 HGRALPPMGMRE  563 (607)
T ss_dssp             EEEECCCEEHHH
T ss_pred             EEecCCHHHHHh
Confidence            888999988765

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=1.1e-54  Score=527.45  Aligned_cols=204  Identities=24%  Similarity=0.297  Sum_probs=161.8

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++||++.|+.. .+.++|+|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. +
T Consensus       388 i~~~~v~~~y~~~-~~~~vL~~isl~i~~G~~~~ivG~sGs--GKSTl------~~ll~g~~~~~~G~i~i~g~~i~~~~  458 (1284)
T 3g5u_A          388 LEFKNIHFSYPSR-KEVQILKGLNLKVKSGQTVALVGNSGC--GKSTT------VQLMQRLYDPLDGMVSIDGQDIRTIN  458 (1284)
T ss_dssp             EEEEEEEECCSST-TSCCSEEEEEEEECTTCEEEEECCSSS--SHHHH------HHHTTTSSCCSEEEEEETTEEGGGSC
T ss_pred             EEEEEEEEEcCCC-CCCcceecceEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCeEEEECCEEHHhCC
Confidence            4599999998532 245799999999988      999999  56655      579999999999999999999864 4


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHH-----HHHHHHc--CCCcccCCccccCChHHHhhh
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEI-----SNMIGDL--GIPHKRTSLANTLSGGMQRKL  195 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LSgG~~qr~  195 (601)
                      ...+|+.+|||||+|.+|+. ||+||+.|+...  .+.++..+.+     .+.++.+  |++...++...+||||||||+
T Consensus       459 ~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Qri  535 (1284)
T 3g5u_A          459 VRYLREIIGVVSQEPVLFAT-TIAENIRYGRED--VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRI  535 (1284)
T ss_dssp             HHHHHHHEEEECSSCCCCSS-CHHHHHHHHCSS--CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHH
T ss_pred             HHHHHhheEEEcCCCccCCc-cHHHHHhcCCCC--CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHH
Confidence            55678889999999999865 999999997542  2333332222     2334443  334445667789999999999


Q ss_pred             hchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhcc
Q psy7365         196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSF  275 (601)
Q Consensus       196 ~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  275 (601)
                      +||||++.+                                                                       
T Consensus       536 aiARal~~~-----------------------------------------------------------------------  544 (1284)
T 3g5u_A          536 AIARALVRN-----------------------------------------------------------------------  544 (1284)
T ss_dssp             HHHHHHHHC-----------------------------------------------------------------------
T ss_pred             HHHHHHhcC-----------------------------------------------------------------------
Confidence            876554333                                                                       


Q ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc
Q psy7365         276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  345 (601)
Q Consensus       276 ~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~  345 (601)
                        |++||||||||+||+.+.+.+.+.++++      .+|+|+|++||+++++.. ||+|++|++|+++..
T Consensus       545 --p~iliLDEpts~LD~~~~~~i~~~l~~~------~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~  605 (1284)
T 3g5u_A          545 --PKILLLDEATSALDTESEAVVQAALDKA------REGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQ  605 (1284)
T ss_dssp             --CSEEEEESTTCSSCHHHHHHHHHHHHHH------HTTSEEEEECSCHHHHTT-CSEEEECSSSCCCCE
T ss_pred             --CCEEEEECCCCCCCHHHHHHHHHHHHHH------cCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEE
Confidence              4899999999999999999999999876      258999999999999876 999999999998643

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=7.7e-55  Score=498.66  Aligned_cols=366  Identities=21%  Similarity=0.270  Sum_probs=235.8

Q ss_pred             ccceeecceEEeec------ccCCCCCCCccccc---------------hhhhHHHhccCCCCCC-------eeEEEEcc
Q psy7365          65 DSYGISDTSLEEQP------LGPSGITLGLHTLG---------------LEFVSRSMLMGMLPVS-------SGTAKIYD  116 (601)
Q Consensus        65 ~~~~~~~~~~~~~~------~g~~g~~~g~~~~g---------------~~~~~~~~l~Gl~~~~-------~G~v~~~g  116 (601)
                      ..++|+|+||++.+      +|||||  |||||-               -+....+++.|+.+|+       .|.|.++|
T Consensus        30 ~~~~L~~vsl~i~~Ge~~~liGpNGa--GKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~  107 (670)
T 3ux8_A           30 RAHNLKNIDVEIPRGKLVVLTGLSGS--GKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQ  107 (670)
T ss_dssp             CSTTCCSEEEEEETTSEEEEECSTTS--SHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESS
T ss_pred             CccceeccEEEECCCCEEEEECCCCC--CHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecC
Confidence            45689999999988      999999  677661               1111237889999998       55666666


Q ss_pred             ccCCCchHHhcccEEEEccCC-------------------CCCCCCCHHHHHHHhHhhc--CCChHHHH------HHHHH
Q psy7365         117 HDIRTDMTTIRRSLGVCPQYN-------------------ALFDKLTVEEHMWFYSQLK--QVPKDLAQ------LEISN  169 (601)
Q Consensus       117 ~~~~~~~~~~~~~ig~v~Q~~-------------------~~~~~~tv~e~l~~~~~~~--~~~~~~~~------~~~~~  169 (601)
                      .+....   .+..+|++||.+                   ..++.+||.||+.|+....  ........      .+..+
T Consensus       108 ~~~~~~---~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (670)
T 3ux8_A          108 KTTSRN---PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLG  184 (670)
T ss_dssp             CC--------CCBHHHHTTCC-------------------------CC--------------------------CHHHHH
T ss_pred             chhhcc---chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHH
Confidence            554221   123444444433                   2356789999998753221  11111000      11124


Q ss_pred             HHHHcCCCcc-cCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhh
Q psy7365         170 MIGDLGIPHK-RTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTH  248 (601)
Q Consensus       170 ~l~~~gl~~~-~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~  248 (601)
                      +++.+||.+. .++++.+|||||||||+|||||                                      +++|     
T Consensus       185 ~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL--------------------------------------~~~p-----  221 (670)
T 3ux8_A          185 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQI--------------------------------------GSRL-----  221 (670)
T ss_dssp             HHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHH--------------------------------------HTCC-----
T ss_pred             HHHHcCCchhhhcCCcccCCHHHHHHHHHHHHH--------------------------------------hhCC-----
Confidence            6899999875 7999999999999999865543                                      3333     


Q ss_pred             HHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHH
Q psy7365         249 KQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEAD  328 (601)
Q Consensus       249 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~  328 (601)
                                                  .|++|||||||+||||..+..++++|+++.     ..|+|||+||||++++.
T Consensus       222 ----------------------------~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~-----~~g~tvi~vtHd~~~~~  268 (670)
T 3ux8_A          222 ----------------------------TGVLYVLDEPSIGLHQRDNDRLIATLKSMR-----DLGNTLIVVEHDEDTML  268 (670)
T ss_dssp             ----------------------------CSCEEEEECTTTTCCGGGHHHHHHHHHHHH-----HTTCEEEEECCCHHHHH
T ss_pred             ----------------------------CCCEEEEECCccCCCHHHHHHHHHHHHHHH-----HcCCEEEEEeCCHHHHh
Confidence                                        145999999999999999999999999983     35899999999999865


Q ss_pred             hcCCEEEEe------cCCccccccCccccc-------------------c----ccc----------------------c
Q psy7365         329 LLGDRIAII------AAGKLQCCGSSVFLK-------------------N----SFA----------------------R  357 (601)
Q Consensus       329 ~l~Drv~vL------~~GkIv~~G~~~lLk-------------------~----~~g----------------------~  357 (601)
                       .||++++|      .+|+++..+++..+.                   .    ...                      .
T Consensus       269 -~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vsl~I~~  347 (670)
T 3ux8_A          269 -AADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYLSGKKFIPIPAERRRPDGRWLEVVGAREHNLKNVSVKIPL  347 (670)
T ss_dssp             -HCSEEEEECSSSGGGCCSEEEEECHHHHHTCTTCHHHHHHTTSSCCCCCSSCCCCCSCEEEEEEECSTTCCSEEEEEET
T ss_pred             -hCCEEEEecccccccCCEEEEecCHHHHhcCchhHHHHHhccccccccccccccccccceeecCccccccccceeEecC
Confidence             59999999      788887655321000                   0    000                      0


Q ss_pred             cc---ccccccC--C-----------------------------------------------cc----------------
Q psy7365         358 GY---YLSLDMK--S-----------------------------------------------AP----------------  369 (601)
Q Consensus       358 g~---~igld~~--~-----------------------------------------------~~----------------  369 (601)
                      |.   ++|-++.  +                                               .+                
T Consensus       348 Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (670)
T 3ux8_A          348 GTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRD  427 (670)
T ss_dssp             TSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCCHHHHHTHHHHHHH
T ss_pred             CCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcchhhhhhhhHHHHH
Confidence            00   0000000  0                                               00                


Q ss_pred             ----------------------------cccccccCCCCccc--------------------------------CCCCCH
Q psy7365         370 ----------------------------QKSYIGYCPQFDAL--------------------------------NDRLTP  389 (601)
Q Consensus       370 ----------------------------~~~~ig~v~Q~~~l--------------------------------~~~lTv  389 (601)
                                                  .....|+++|+..+                                +..+|+
T Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltv  507 (670)
T 3ux8_A          428 VFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTV  507 (670)
T ss_dssp             HHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCBTTBCHHHHHTSBH
T ss_pred             HhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheeecCCCHHHHhhCCH
Confidence                                        00001222222111                                124789


Q ss_pred             HHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCc-ccccccCcCChHHHHHHHHHHHHhCCC---CEEEEECCCCCCCHHH
Q psy7365         390 REHLEFYSRVRNLPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNT---PLIFLDEPTSGMDPGA  465 (601)
Q Consensus       390 ~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~-~~~~~~~~LSgGqkQRl~lA~AL~~~P---~lLlLDEPTsGLD~~~  465 (601)
                      .||+.|+...      ...++..+.++.+++.. ..++++.+|||||||||+|||||+++|   ++|||||||+|||+.+
T Consensus       508 ~e~l~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~  581 (670)
T 3ux8_A          508 EDALDFFASI------PKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDD  581 (670)
T ss_dssp             HHHHHHTTTC------HHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHH
T ss_pred             HHHHHHHHHh------hhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHH
Confidence            9998875321      11245667888999964 568999999999999999999999887   5999999999999999


Q ss_pred             HHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEE------eCCEEEEecCHHHHHH
Q psy7365         466 RRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLGSATHLKS  519 (601)
Q Consensus       466 ~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL------~~G~iv~~G~~~~L~~  519 (601)
                      +..++++|++++++|+|||++|||++++. .||||++|      ++|++++.|+++++.+
T Consensus       582 ~~~i~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~  640 (670)
T 3ux8_A          582 IARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAVGTPEEVAE  640 (670)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEEESSSGGGCCEEEEEECHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEecCHHHHHh
Confidence            99999999999888999999999999885 69999999      8999999999999964

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=2.6e-55  Score=489.71  Aligned_cols=341  Identities=24%  Similarity=0.265  Sum_probs=253.5

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCCCeeEE-----------EEccccCCCchH---HhcccEEEEccCCCC---CC
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTA-----------KIYDHDIRTDMT---TIRRSLGVCPQYNAL---FD  141 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v-----------~~~g~~~~~~~~---~~~~~ig~v~Q~~~~---~~  141 (601)
                      +|||||  |||||      .|+|+|+++|++|+|           .++|.++.....   .....+...+|...+   +.
T Consensus        31 iGpNGa--GKSTL------lkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (538)
T 3ozx_A           31 LGKNGV--GKTTV------LKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFL  102 (538)
T ss_dssp             ECCTTS--SHHHH------HHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTC
T ss_pred             ECCCCC--cHHHH------HHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhc
Confidence            999999  56665      679999999999998           567766532111   112245555555432   22


Q ss_pred             CCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhh
Q psy7365         142 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVI  221 (601)
Q Consensus       142 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~  221 (601)
                      ..++.+++...         ..+++++++++.+|+.+..++++.+|||||||||+|||||+                   
T Consensus       103 ~~~v~~~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~-------------------  154 (538)
T 3ozx_A          103 KGTVNEILTKI---------DERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLL-------------------  154 (538)
T ss_dssp             CSBHHHHHHHH---------CCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHH-------------------
T ss_pred             cCcHHHHhhcc---------hhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH-------------------
Confidence            34787765321         11235678899999999999999999999999998654432                   


Q ss_pred             HhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHH
Q psy7365         222 LRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWEL  301 (601)
Q Consensus       222 ~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~  301 (601)
                                         .+                                   |++|||||||++||+.++..++++
T Consensus       155 -------------------~~-----------------------------------p~illlDEPts~LD~~~~~~l~~~  180 (538)
T 3ozx_A          155 -------------------RE-----------------------------------ADVYIFDQPSSYLDVRERMNMAKA  180 (538)
T ss_dssp             -------------------SC-----------------------------------CSEEEEESTTTTCCHHHHHHHHHH
T ss_pred             -------------------cC-----------------------------------CCEEEEECCcccCCHHHHHHHHHH
Confidence                               33                                   589999999999999999999999


Q ss_pred             HHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc-----------------c---------C--c-cc-c
Q psy7365         302 LIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC-----------------G---------S--S-VF-L  351 (601)
Q Consensus       302 l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~-----------------G---------~--~-~l-L  351 (601)
                      |+++     +. |+|||++|||++++..+||+++++.+|.....                 +         .  . .. .
T Consensus       181 l~~l-----~~-g~tii~vsHdl~~~~~~~d~i~vl~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~  254 (538)
T 3ozx_A          181 IREL-----LK-NKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFML  254 (538)
T ss_dssp             HHHH-----CT-TSEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHTEETTTTEECSSSCCCCSC
T ss_pred             HHHH-----hC-CCEEEEEEeChHHHHhhCCEEEEecCCcccccccchhhhHHHHHHHHHhhhchhhhhhccchhhhccc
Confidence            9998     23 89999999999999999999999976432110                 0         0  0 00 0


Q ss_pred             c---c------------------ccc------------cccc---cccccC--------------C-----ccccccccc
Q psy7365         352 K---N------------------SFA------------RGYY---LSLDMK--------------S-----APQKSYIGY  376 (601)
Q Consensus       352 k---~------------------~~g------------~g~~---igld~~--------------~-----~~~~~~ig~  376 (601)
                      .   .                  .++            .|.+   +|.++.              .     ....+.++|
T Consensus       255 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~  334 (538)
T 3ozx_A          255 KEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY  334 (538)
T ss_dssp             C----------CCEEEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEE
T ss_pred             cccccccccccccceEEEcceEEEECCEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEe
Confidence            0   0                  000            0000   111100              0     011356899


Q ss_pred             CCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEEC
Q psy7365         377 CPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDE  456 (601)
Q Consensus       377 v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDE  456 (601)
                      +||+....+.+||.||+.+..... ...  ....++++++.+++.+..++++.+|||||||||+||+||+.+|++|||||
T Consensus       335 ~~q~~~~~~~~tv~~~l~~~~~~~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDE  411 (538)
T 3ozx_A          335 KPQRIFPNYDGTVQQYLENASKDA-LST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQ  411 (538)
T ss_dssp             ECSSCCCCCSSBHHHHHHHHCSST-TCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred             echhcccccCCCHHHHHHHhhhhc-cch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            999877667889999998742111 111  12457889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccChhHHHhhCCEEEEEeC--CEEEEecCHHHHH
Q psy7365         457 PTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVN--GQFTCLGSATHLK  518 (601)
Q Consensus       457 PTsGLD~~~~~~i~~lL~~l~~-~G~tVllsTHdl~e~~~l~drv~iL~~--G~iv~~G~~~~L~  518 (601)
                      ||+|||+.++.+++++|+++++ .|+|||++|||++++..+||||++|++  |.....+++.++.
T Consensus       412 PT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~  476 (538)
T 3ozx_A          412 PSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK  476 (538)
T ss_dssp             TTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred             CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence            9999999999999999999975 599999999999999999999999986  5666667665543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-55  Score=493.17  Aligned_cols=366  Identities=17%  Similarity=0.208  Sum_probs=262.0

Q ss_pred             ccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEE-----------Ecc
Q psy7365          54 SLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAK-----------IYD  116 (601)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~-----------~~g  116 (601)
                      ++++.|+..   ...+++++ .+.+      +|||||  |||||      .++|+|+++|++|+|.           +.|
T Consensus        82 ~~~~~Y~~~---~~~l~~l~-~~~~Gei~~LvGpNGa--GKSTL------LkiL~Gll~P~~G~i~~~~~~~~~~~~~~g  149 (608)
T 3j16_B           82 HVTHRYSAN---SFKLHRLP-TPRPGQVLGLVGTNGI--GKSTA------LKILAGKQKPNLGRFDDPPEWQEIIKYFRG  149 (608)
T ss_dssp             TEEEECSTT---SCEEECCC-CCCTTSEEEEECCTTS--SHHHH------HHHHHTSSCCCTTTTCCSSCHHHHHHHTTT
T ss_pred             CeEEEECCC---ceeecCCC-CCCCCCEEEEECCCCC--hHHHH------HHHHhcCCCCCCceEecccchhhhhheecC
Confidence            455665432   22455554 3434      999999  56655      6799999999999983           233


Q ss_pred             ccCCCch-HHhccc--EEEEccCCCCC------CCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccC
Q psy7365         117 HDIRTDM-TTIRRS--LGVCPQYNALF------DKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTL  187 (601)
Q Consensus       117 ~~~~~~~-~~~~~~--ig~v~Q~~~~~------~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L  187 (601)
                      .++.... ......  ..+.+|....+      +..++.+++....       ....+++.++++.+||.+..++++.+|
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-------~~~~~~~~~~l~~~gl~~~~~~~~~~L  222 (608)
T 3j16_B          150 SELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM-------EKSPEDVKRYIKILQLENVLKRDIEKL  222 (608)
T ss_dssp             STHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC-------CSCHHHHHHHHHHHTCTGGGGSCTTTC
T ss_pred             hhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh-------hhHHHHHHHHHHHcCCcchhCCChHHC
Confidence            3221100 011112  23344442211      1235555543211       112356889999999999999999999


Q ss_pred             ChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHH
Q psy7365         188 SGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAV  267 (601)
Q Consensus       188 SgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~  267 (601)
                      ||||||||+||+||                                      +++                         
T Consensus       223 SgGe~Qrv~iAraL--------------------------------------~~~-------------------------  239 (608)
T 3j16_B          223 SGGELQRFAIGMSC--------------------------------------VQE-------------------------  239 (608)
T ss_dssp             CHHHHHHHHHHHHH--------------------------------------HSC-------------------------
T ss_pred             CHHHHHHHHHHHHH--------------------------------------HhC-------------------------
Confidence            99999999865433                                      233                         


Q ss_pred             HHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccccc-
Q psy7365         268 TVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG-  346 (601)
Q Consensus       268 ~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G-  346 (601)
                                |++|||||||++||+.++..++++|+++.     .+|+|||++|||++++..+|||+++|.+|...... 
T Consensus       240 ----------p~llllDEPts~LD~~~~~~l~~~l~~l~-----~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~~~~~  304 (608)
T 3j16_B          240 ----------ADVYMFDEPSSYLDVKQRLNAAQIIRSLL-----APTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVV  304 (608)
T ss_dssp             ----------CSEEEEECTTTTCCHHHHHHHHHHHHGGG-----TTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEE
T ss_pred             ----------CCEEEEECcccCCCHHHHHHHHHHHHHHH-----hCCCEEEEEeCCHHHHHHhCCEEEEEeCCcccccee
Confidence                      58999999999999999999999999883     45899999999999999999999999765421100 


Q ss_pred             ---------------C--------------------c---ccc--cc-c--c--------------ccc--------ccc
Q psy7365         347 ---------------S--------------------S---VFL--KN-S--F--------------ARG--------YYL  361 (601)
Q Consensus       347 ---------------~--------------------~---~lL--k~-~--~--------------g~g--------~~i  361 (601)
                                     .                    .   ...  .. .  +              ..|        -++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~ii  384 (608)
T 3j16_B          305 TLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMM  384 (608)
T ss_dssp             CCCEEHHHHHHHHHHTEETTTTEECSSSCCCCCCSSSSCCCCCCSSSSCCEECCEEEECSSCEEEECCEECCTTCEEEEE
T ss_pred             cCchhHHHHHHHhhccccchhhhccccccccccccccccceeeeccceeEEecCcccccCceEEEEecCccccceEEEEE
Confidence                           0                    0   000  00 0  0              000        011


Q ss_pred             ccccC--------------C----cccccccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcc
Q psy7365         362 SLDMK--------------S----APQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHY  423 (601)
Q Consensus       362 gld~~--------------~----~~~~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~  423 (601)
                      |.++.              .    ...+..++|+||+.......||++++...  ..+...  ....++++++.++|.+.
T Consensus       385 G~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~--~~~~~~--~~~~~~~~l~~l~l~~~  460 (608)
T 3j16_B          385 GENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKK--IRGQFL--NPQFQTDVVKPLRIDDI  460 (608)
T ss_dssp             SCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHH--CSSTTT--SHHHHHHTHHHHTSTTT
T ss_pred             CCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHH--hhcccc--cHHHHHHHHHHcCChhh
Confidence            11100              0    00124589999997766678999987532  222111  12456789999999999


Q ss_pred             cccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEccChhHHHhhCCEEEE
Q psy7365         424 SDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVILTSHNMEECEALCTKLTI  502 (601)
Q Consensus       424 ~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~-~~G~tVllsTHdl~e~~~l~drv~i  502 (601)
                      .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|+++. +.|+|||++|||++++..+||||++
T Consensus       461 ~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrviv  540 (608)
T 3j16_B          461 IDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIV  540 (608)
T ss_dssp             SSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEE
T ss_pred             hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence            999999999999999999999999999999999999999999999999999986 4599999999999999999999999


Q ss_pred             EeC--CEEEEecCHHHHHHH
Q psy7365         503 MVN--GQFTCLGSATHLKSK  520 (601)
Q Consensus       503 L~~--G~iv~~G~~~~L~~~  520 (601)
                      |++  |++++.|+|+++...
T Consensus       541 l~~~~g~~~~~g~p~~~~~~  560 (608)
T 3j16_B          541 FEGIPSKNAHARAPESLLTG  560 (608)
T ss_dssp             CEEETTTEEECCCCEEHHHH
T ss_pred             EeCCCCeEEecCChHHHhhh
Confidence            996  899999999988653

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=3.7e-51  Score=497.72  Aligned_cols=199  Identities=24%  Similarity=0.298  Sum_probs=160.6

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++|+++.|.+. .+.++|+|+||++++      +|||||  |||||      .++|.|+++|++|+|.++|.+++. +
T Consensus       416 I~~~nvsF~Y~~~-~~~~vL~~isl~i~~G~~vaivG~sGs--GKSTl------l~ll~~~~~~~~G~I~idG~~i~~~~  486 (1321)
T 4f4c_A          416 ITVENVHFTYPSR-PDVPILRGMNLRVNAGQTVALVGSSGC--GKSTI------ISLLLRYYDVLKGKITIDGVDVRDIN  486 (1321)
T ss_dssp             EEEEEEEECCSSS-TTSCSEEEEEEEECTTCEEEEEECSSS--CHHHH------HHHHTTSSCCSEEEEEETTEETTTSC
T ss_pred             EEEEEeeeeCCCC-CCCceeeceEEeecCCcEEEEEecCCC--cHHHH------HHHhccccccccCcccCCCccchhcc
Confidence            4599999997432 256799999999998      999999  56654      579999999999999999999976 5


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC-----------cccCCccccCChHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP-----------HKRTSLANTLSGGM  191 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgG~  191 (601)
                      ...+|+.||||+|+|.+| +-|++||+.|+...  .+.+    ++.++++..++.           -.......+|||||
T Consensus       487 ~~~lr~~i~~v~Q~~~Lf-~~TI~eNI~~g~~~--~~~~----~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQ  559 (1321)
T 4f4c_A          487 LEFLRKNVAVVSQEPALF-NCTIEENISLGKEG--ITRE----EMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQ  559 (1321)
T ss_dssp             HHHHHHHEEEECSSCCCC-SEEHHHHHHTTCTT--CCHH----HHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHH
T ss_pred             HHHHhhcccccCCcceee-CCchhHHHhhhccc--chHH----HHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHH
Confidence            667888999999999998 56999999987432  2333    344555554432           23345567899999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||++||||++.|                                                                   
T Consensus       560 kQRiaiARAl~~~-------------------------------------------------------------------  572 (1321)
T 4f4c_A          560 KQRIAIARALVRN-------------------------------------------------------------------  572 (1321)
T ss_dssp             HHHHHHHHHHTTC-------------------------------------------------------------------
T ss_pred             HHHHHHHHHHccC-------------------------------------------------------------------
Confidence            9999876654433                                                                   


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQC  344 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~  344 (601)
                            |++||||||||+||+.+...+.+.|.++      .+|+|+|++||+++.+ +.||+|++|++|+|+.
T Consensus       573 ------~~IliLDE~tSaLD~~te~~i~~~l~~~------~~~~T~iiiaHrls~i-~~aD~Iivl~~G~ive  632 (1321)
T 4f4c_A          573 ------PKILLLDEATSALDAESEGIVQQALDKA------AKGRTTIIIAHRLSTI-RNADLIISCKNGQVVE  632 (1321)
T ss_dssp             ------CSEEEEESTTTTSCTTTHHHHHHHHHHH------HTTSEEEEECSCTTTT-TTCSEEEEEETTEEEE
T ss_pred             ------CCEEEEecccccCCHHHHHHHHHHHHHH------hCCCEEEEEcccHHHH-HhCCEEEEeeCCeeec
Confidence                  4899999999999999999999999887      2589999999999976 5799999999999853

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=2.9e-51  Score=478.93  Aligned_cols=351  Identities=21%  Similarity=0.226  Sum_probs=257.4

Q ss_pred             cchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccC
Q psy7365          46 GAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI  119 (601)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~  119 (601)
                      +..+. ..++++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|      |+|  +|.+.
T Consensus       433 ~~~L~-~~~ls~~yg~----~~iL~~vsl~I~~Ge~v~LiGpNGs--GKSTL------Lk~Lag------G~i--~g~~~  491 (986)
T 2iw3_A          433 GEDLC-NCEFSLAYGA----KILLNKTQLRLKRARRYGICGPNGC--GKSTL------MRAIAN------GQV--DGFPT  491 (986)
T ss_dssp             SCEEE-EEEEEEEETT----EEEEEEEEEEEETTCEEEEECSTTS--SHHHH------HHHHHH------TCS--TTCCC
T ss_pred             cceeE-EeeEEEEECC----EEeEecceEEEcCCCEEEEECCCCC--CHHHH------HHHHhC------CCc--CCCcc
Confidence            44444 5589998853    4699999999988      999999  56655      568884      443  45443


Q ss_pred             CCchHHhcccEEEEccCC-CCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC-cccCCccccCChHHHhhhhc
Q psy7365         120 RTDMTTIRRSLGVCPQYN-ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP-HKRTSLANTLSGGMQRKLDN  197 (601)
Q Consensus       120 ~~~~~~~~~~ig~v~Q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qr~~~  197 (601)
                      ..     ..+++|++|++ .+++.+||.||+.+  ...+.     ++++.++++.+|+. +..++++.+||||||||++|
T Consensus       492 ~~-----~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaL  559 (986)
T 2iw3_A          492 QE-----ECRTVYVEHDIDGTHSDTSVLDFVFE--SGVGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLAL  559 (986)
T ss_dssp             TT-----TSCEEETTCCCCCCCTTSBHHHHHHT--TCSSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHH
T ss_pred             cc-----ceeEEEEcccccccccCCcHHHHHHH--hhcCH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHH
Confidence            11     12479999986 68889999999976  22332     46788999999995 67899999999999999986


Q ss_pred             hhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCC
Q psy7365         198 VKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVP  277 (601)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  277 (601)
                      ||++                                      +.+                                   
T Consensus       560 ArAL--------------------------------------~~~-----------------------------------  566 (986)
T 2iw3_A          560 ARAV--------------------------------------LRN-----------------------------------  566 (986)
T ss_dssp             HHHH--------------------------------------HTT-----------------------------------
T ss_pred             HHHH--------------------------------------hcC-----------------------------------
Confidence            5432                                      233                                   


Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccc-cccCccc------
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQ-CCGSSVF------  350 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv-~~G~~~l------  350 (601)
                      |++|||||||+|||+.++..++++|++        .|+|+|++|||++++..+||++++|.+|+++ ..|....      
T Consensus       567 P~lLLLDEPTs~LD~~~~~~l~~~L~~--------~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~~~  638 (986)
T 2iw3_A          567 ADILLLDEPTNHLDTVNVAWLVNYLNT--------CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCP  638 (986)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHHHH--------SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHHHCG
T ss_pred             CCEEEEECCccCCCHHHHHHHHHHHHh--------CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHhhhH
Confidence            589999999999999999999999975        3889999999999999999999999999985 2332100      


Q ss_pred             ------------c-----cccc-------cc----------cc-------c---------------ccccc---------
Q psy7365         351 ------------L-----KNSF-------AR----------GY-------Y---------------LSLDM---------  365 (601)
Q Consensus       351 ------------L-----k~~~-------g~----------g~-------~---------------igld~---------  365 (601)
                                  .     ....       ++          .|       .               +|.++         
T Consensus       639 ~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLkl  718 (986)
T 2iw3_A          639 AAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINV  718 (986)
T ss_dssp             GGGGSSSTTTCCCCCCCCCCCCCTTCCSTTSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHH
T ss_pred             HHHHHHhhhhhhhhccccccccccccccCCCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHH
Confidence                        0     0000       00          00       0               00000         


Q ss_pred             -----CCc--c----cccccccCCCCccc----CCCCCHHHHHHHhHHh-------------------------------
Q psy7365         366 -----KSA--P----QKSYIGYCPQFDAL----NDRLTPREHLEFYSRV-------------------------------  399 (601)
Q Consensus       366 -----~~~--~----~~~~ig~v~Q~~~l----~~~lTv~E~L~~~~~~-------------------------------  399 (601)
                           ...  .    ...++||++|++..    ....|+.+++.+....                               
T Consensus       719 LaGll~P~sG~I~~~~~~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~  798 (986)
T 2iw3_A          719 LTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGT  798 (986)
T ss_dssp             HTTSSCCSEEEEEECTTCCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTE
T ss_pred             HhCCCCCCceEEEEcCccceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccc
Confidence                 000  0    01257888887521    2235666666431100                               


Q ss_pred             ----------------------------------------------------------------------cCCChhHHHH
Q psy7365         400 ----------------------------------------------------------------------RNLPSVLLNT  409 (601)
Q Consensus       400 ----------------------------------------------------------------------~g~~~~~~~~  409 (601)
                                                                                            .+.......+
T Consensus       799 ~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~  878 (986)
T 2iw3_A          799 PRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRK  878 (986)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHH
T ss_pred             hhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHH
Confidence                                                                                  0000011135


Q ss_pred             HHHHHHHHcCCCc-c-cccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEc
Q psy7365         410 IVNESLNKFALGH-Y-SDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS  487 (601)
Q Consensus       410 ~~~~lLe~~~L~~-~-~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsT  487 (601)
                      +++++|+.+||.+ . .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++   |.|||++|
T Consensus       879 ~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiIS  955 (986)
T 2iw3_A          879 EIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIIT  955 (986)
T ss_dssp             HHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEEC
T ss_pred             HHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEE
Confidence            6788999999975 3 58899999999999999999999999999999999999999999999988765   67999999


Q ss_pred             cChhHHHhhCCEEEEEeCCEEEEecC
Q psy7365         488 HNMEECEALCTKLTIMVNGQFTCLGS  513 (601)
Q Consensus       488 Hdl~e~~~l~drv~iL~~G~iv~~G~  513 (601)
                      ||++++..+|||+++|++|+++..|+
T Consensus       956 HD~e~v~~l~DrVivL~~G~Iv~~G~  981 (986)
T 2iw3_A          956 HSAEFTKNLTEEVWAVKDGRMTPSGH  981 (986)
T ss_dssp             SCHHHHTTTCCEEECCBTTBCCC---
T ss_pred             CCHHHHHHhCCEEEEEECCEEEEeCC
Confidence            99999999999999999999987764

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=3.2e-46  Score=396.27  Aligned_cols=220  Identities=24%  Similarity=0.323  Sum_probs=191.1

Q ss_pred             CccchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccc
Q psy7365          44 SMGAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDH  117 (601)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~  117 (601)
                      ++..+++.++||+|.|++.+....+|+|+||++.+      +|||||  |||||      .|+|+|+++|++|+|.++|+
T Consensus        19 ~~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGa--GKSTL------lr~i~GL~~p~~G~I~i~G~   90 (366)
T 3tui_C           19 DDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGA--GKSTL------IRCVNLLERPTEGSVLVDGQ   90 (366)
T ss_dssp             ----CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTS--SHHHH------HHHHHTSSCCSEEEEEETTE
T ss_pred             CCCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCc--hHHHH------HHHHhcCCCCCceEEEECCE
Confidence            33445677999999997655567899999999988      999999  56654      57999999999999999999


Q ss_pred             cCCCc----hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHh
Q psy7365         118 DIRTD----MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQR  193 (601)
Q Consensus       118 ~~~~~----~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~q  193 (601)
                      ++...    ....|++||||||++.+|+.+||+||++|+....+.++++.++++.++++.+||.+..++++.+|||||||
T Consensus        91 ~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQ  170 (366)
T 3tui_C           91 ELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQ  170 (366)
T ss_dssp             ECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHH
T ss_pred             ECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHH
Confidence            98642    12356789999999999999999999999998888888888899999999999999999999999999999


Q ss_pred             hhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhh
Q psy7365         194 KLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAM  273 (601)
Q Consensus       194 r~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  273 (601)
                      ||+|||||+                                      ++                               
T Consensus       171 RVaIArAL~--------------------------------------~~-------------------------------  181 (366)
T 3tui_C          171 RVAIARALA--------------------------------------SN-------------------------------  181 (366)
T ss_dssp             HHHHHHHTT--------------------------------------TC-------------------------------
T ss_pred             HHHHHHHHh--------------------------------------cC-------------------------------
Confidence            998655433                                      33                               


Q ss_pred             ccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         274 SFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       274 ~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                          |++|||||||+||||.++..++++|++++    +..|+|||++|||++++..+|||+++|.+|+++..|++
T Consensus       182 ----P~lLLlDEPTs~LD~~~~~~i~~lL~~l~----~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~  248 (366)
T 3tui_C          182 ----PKVLLCDQATSALDPATTRSILELLKDIN----RRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTV  248 (366)
T ss_dssp             ----CSEEEEESTTTTSCHHHHHHHHHHHHHHH----HHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBH
T ss_pred             ----CCEEEEECCCccCCHHHHHHHHHHHHHHH----HhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence                58999999999999999999999999984    23599999999999999999999999999999887754

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=1.9e-45  Score=390.05  Aligned_cols=212  Identities=26%  Similarity=0.343  Sum_probs=184.9

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-  121 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-  121 (601)
                      ++.++||+|.|++    ..+|+|+||++.+      +|||||  |||||      .|+|+|+++|++|+|.++|+++.. 
T Consensus         4 ~l~i~~ls~~y~~----~~~L~~vsl~i~~Ge~~~llGpsGs--GKSTL------Lr~iaGl~~p~~G~I~i~G~~i~~~   71 (359)
T 3fvq_A            4 ALHIGHLSKSFQN----TPVLNDISLSLDPGEILFIIGASGC--GKTTL------LRCLAGFEQPDSGEISLSGKTIFSK   71 (359)
T ss_dssp             CEEEEEEEEEETT----EEEEEEEEEEECTTCEEEEEESTTS--SHHHH------HHHHHTSSCCSEEEEEETTEEEESS
T ss_pred             EEEEEeEEEEECC----EEEEEeeEEEEcCCCEEEEECCCCc--hHHHH------HHHHhcCCCCCCcEEEECCEECccc
Confidence            3558999999964    4599999999988      999999  56654      579999999999999999998731 


Q ss_pred             --chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365         122 --DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK  199 (601)
Q Consensus       122 --~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~  199 (601)
                        .....++.||||||++.+|+++||+||+.|+....+.++++.++++.++++.+||.+..++++.+|||||||||+|||
T Consensus        72 ~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValAr  151 (359)
T 3fvq_A           72 NTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALAR  151 (359)
T ss_dssp             SCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred             ccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence              223346789999999999999999999999988888888888889999999999999999999999999999998654


Q ss_pred             hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365         200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS  279 (601)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  279 (601)
                      ||                                      +++                                   |+
T Consensus       152 AL--------------------------------------~~~-----------------------------------P~  158 (359)
T 3fvq_A          152 AL--------------------------------------APD-----------------------------------PE  158 (359)
T ss_dssp             HH--------------------------------------TTC-----------------------------------CS
T ss_pred             HH--------------------------------------HcC-----------------------------------CC
Confidence            43                                      233                                   58


Q ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                      +|||||||+|||+..+..+++.|+++.    +..|+|+|++|||++++..+||||++|.+|+++..|++.
T Consensus       159 lLLLDEPts~LD~~~r~~l~~~l~~~~----~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~  224 (359)
T 3fvq_A          159 LILLDEPFSALDEQLRRQIREDMIAAL----RANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPH  224 (359)
T ss_dssp             EEEEESTTTTSCHHHHHHHHHHHHHHH----HHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHH----HhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHH
Confidence            999999999999999999999888774    346999999999999999999999999999999887653

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=5.1e-45  Score=389.27  Aligned_cols=211  Identities=26%  Similarity=0.366  Sum_probs=186.4

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM  123 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~  123 (601)
                      +.++||+|.|++    ..+|+|+||++.+      +|||||  |||||      .|+|+|+++|++|+|.++|+++....
T Consensus         4 l~~~~l~~~yg~----~~~L~~vsl~i~~Ge~~~llGpsGs--GKSTL------Lr~iaGl~~p~~G~I~i~G~~~~~~~   71 (381)
T 3rlf_A            4 VQLQNVTKAWGE----VVVSKDINLDIHEGEFVVFVGPSGC--GKSTL------LRMIAGLETITSGDLFIGEKRMNDTP   71 (381)
T ss_dssp             EEEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTS--SHHHH------HHHHHTSSCCSEEEEEETTEECTTCC
T ss_pred             EEEEeEEEEECC----EEEEeeeEEEECCCCEEEEEcCCCc--hHHHH------HHHHHcCCCCCCeEEEECCEECCCCC
Confidence            458999999964    4699999999987      999999  56654      57999999999999999999986432


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcc
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFN  203 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~  203 (601)
                      . .++.||||||++.+|+++||+||++|+....+.++++.++++.++++.+||.+..++++.+|||||||||+|||||+ 
T Consensus        72 ~-~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~-  149 (381)
T 3rlf_A           72 P-AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV-  149 (381)
T ss_dssp             G-GGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHH-
T ss_pred             H-HHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHH-
Confidence            2 24679999999999999999999999999889998888999999999999999999999999999999998655432 


Q ss_pred             hhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEE
Q psy7365         204 NKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVIL  283 (601)
Q Consensus       204 ~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liL  283 (601)
                                                           .+                                   |++|||
T Consensus       150 -------------------------------------~~-----------------------------------P~lLLL  157 (381)
T 3rlf_A          150 -------------------------------------AE-----------------------------------PSVFLL  157 (381)
T ss_dssp             -------------------------------------HC-----------------------------------CSEEEE
T ss_pred             -------------------------------------cC-----------------------------------CCEEEE
Confidence                                                 33                                   589999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       284 DEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                      ||||++||+..+..+++.|+++.    +..|+|+|++|||++++..+||||++|.+|+++..|++..
T Consensus       158 DEPts~LD~~~~~~l~~~l~~l~----~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~  220 (381)
T 3rlf_A          158 DEPLSNLDAALRVQMRIEISRLH----KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE  220 (381)
T ss_dssp             ESTTTTSCHHHHHHHHHHHHHHH----HHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             ECCCcCCCHHHHHHHHHHHHHHH----HhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence            99999999999999999999984    2348999999999999999999999999999998886543

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=8.4e-45  Score=373.07  Aligned_cols=215  Identities=25%  Similarity=0.375  Sum_probs=185.3

Q ss_pred             chhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCC
Q psy7365          47 AYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIR  120 (601)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~  120 (601)
                      .++..++||++.|++   ...+|+|+||++.+      +|||||  |||||      .++|+|+++|++|+|+++|+++.
T Consensus         5 ~~~l~i~~ls~~y~~---~~~~L~~isl~i~~Ge~~~iiGpnGs--GKSTL------l~~l~Gl~~p~~G~I~~~G~~i~   73 (275)
T 3gfo_A            5 DYILKVEELNYNYSD---GTHALKGINMNIKRGEVTAILGGNGV--GKSTL------FQNFNGILKPSSGRILFDNKPID   73 (275)
T ss_dssp             CEEEEEEEEEEECTT---SCEEEEEEEEEEETTSEEEEECCTTS--SHHHH------HHHHTTSSCCSEEEEEETTEECC
T ss_pred             CcEEEEEEEEEEECC---CCeEEEeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHHcCCCCCCeEEEECCEECC
Confidence            345679999999853   23599999999988      999999  56655      57999999999999999999985


Q ss_pred             C---chHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhh
Q psy7365         121 T---DMTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD  196 (601)
Q Consensus       121 ~---~~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~  196 (601)
                      .   .....++.+|||||+|. .++.+||+||+.|+....+.++++.++++.++++.+||.+..++++.+|||||||||+
T Consensus        74 ~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~  153 (275)
T 3gfo_A           74 YSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVA  153 (275)
T ss_dssp             CSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred             cccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHH
Confidence            2   22346778999999983 5558999999999998888888888889999999999999999999999999999998


Q ss_pred             chhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccC
Q psy7365         197 NVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFV  276 (601)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  276 (601)
                      |||||                                      +++                                  
T Consensus       154 iAraL--------------------------------------~~~----------------------------------  161 (275)
T 3gfo_A          154 IAGVL--------------------------------------VME----------------------------------  161 (275)
T ss_dssp             HHHHH--------------------------------------TTC----------------------------------
T ss_pred             HHHHH--------------------------------------HcC----------------------------------
Confidence            65433                                      233                                  


Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                       |++|||||||+||||.++..++++|+++..    .+|+|||++|||++++..+|||+++|.+|+++..|++.
T Consensus       162 -P~lLlLDEPts~LD~~~~~~i~~~l~~l~~----~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~  229 (275)
T 3gfo_A          162 -PKVLILDEPTAGLDPMGVSEIMKLLVEMQK----ELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPK  229 (275)
T ss_dssp             -CSEEEEECTTTTCCHHHHHHHHHHHHHHHH----HHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHH
T ss_pred             -CCEEEEECccccCCHHHHHHHHHHHHHHHh----hCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence             589999999999999999999999999831    24899999999999999999999999999999887653

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=4.9e-44  Score=417.44  Aligned_cols=320  Identities=23%  Similarity=0.284  Sum_probs=235.9

Q ss_pred             HHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCCh----------HHHHHH
Q psy7365          97 SRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK----------DLAQLE  166 (601)
Q Consensus        97 ~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~----------~~~~~~  166 (601)
                      +-.|..+.++|.+|+|+++|+++..                  |..+++.+++.|.. ..+++.          .+. .+
T Consensus       384 C~~C~g~rl~~~~~~V~i~G~~i~~------------------~~~~~v~~~l~~~~-~~~l~~~~~~~~~~~~~~~-~~  443 (916)
T 3pih_A          384 CSVCGGRRLNREALSVKINGLNIHE------------------FTELSISEELEFLK-NLNLTEREREIVGELLKEI-EK  443 (916)
T ss_dssp             CTTTCSCCBCTTGGGEEETTEEHHH------------------HHHSBHHHHHHHHH-SCCCCTTTTTTHHHHHHHH-HH
T ss_pred             chhcccccCChHhcCcEECCccHHH------------------hhhCCHHHHHHHHH-hccCcHHHHHHHHhhHHHH-HH
Confidence            4567888899999999999988621                  33467777776633 222211          111 23


Q ss_pred             HHHHHHHcCCCcc-cCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcc
Q psy7365         167 ISNMIGDLGIPHK-RTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMN  245 (601)
Q Consensus       167 ~~~~l~~~gl~~~-~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~  245 (601)
                      ..+.|..+||... .++++.+|||||||||+|||+|.                                      .+|  
T Consensus       444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~--------------------------------------~~p--  483 (916)
T 3pih_A          444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIG--------------------------------------SGL--  483 (916)
T ss_dssp             HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHH--------------------------------------TTC--
T ss_pred             HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHh--------------------------------------hCC--
Confidence            4577889999865 79999999999999998655432                                      222  


Q ss_pred             hhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchh
Q psy7365         246 LTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMD  325 (601)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~  325 (601)
                                                     .|.+|||||||+||||..+..++++|+++     +..|.|||+||||++
T Consensus       484 -------------------------------~~~lllLDEPT~gLD~~~~~~l~~~L~~L-----~~~G~TvivVtHd~~  527 (916)
T 3pih_A          484 -------------------------------TGVIYVLDEPTIGLHPRDTERLIKTLKKL-----RDLGNTVIVVEHDEE  527 (916)
T ss_dssp             -------------------------------CSCEEEEECTTTTCCGGGHHHHHHHHHHT-----TTTTCEEEEECCCHH
T ss_pred             -------------------------------CCcEEEEECCccCCCHHHHHHHHHHHHHH-----HhcCCEEEEEeCCHH
Confidence                                           24699999999999999999999999998     346999999999999


Q ss_pred             HHHhcCCEEEEe------cCCccccccCcccc------------------------------------------cc----
Q psy7365         326 EADLLGDRIAII------AAGKLQCCGSSVFL------------------------------------------KN----  353 (601)
Q Consensus       326 ~~~~l~Drv~vL------~~GkIv~~G~~~lL------------------------------------------k~----  353 (601)
                      ++.. ||++++|      .+|+++..|++..+                                          ++    
T Consensus       528 ~~~~-aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~v~~~~~~~Lk~Vsl~  606 (916)
T 3pih_A          528 VIRN-ADHIIDIGPGGGTNGGRVVFQGTVDELLKNPDSSLTGEYLSGKRKITVNKTRRLPYASLKIKGVRHNNLKNIDVE  606 (916)
T ss_dssp             HHHT-CSEEEEEESSSGGGCSEEEEEECHHHHHHSCTTCHHHHHHHSSSCCCCCSSCCCCSSEEEEEEECSTTCCSEEEE
T ss_pred             HHHh-CCEEEEEcCCcccCCCEEEEeechhhhhcCchhcchhhhhhcccccccccccccccceEEEeeeccccccccceE
Confidence            8765 9999999      67888765532100                                          00    


Q ss_pred             -----------ccccc--ccc--------------------------c---------cccCC-------c----------
Q psy7365         354 -----------SFARG--YYL--------------------------S---------LDMKS-------A----------  368 (601)
Q Consensus       354 -----------~~g~g--~~i--------------------------g---------ld~~~-------~----------  368 (601)
                                 ..|.|  ..+                          +         .+...       .          
T Consensus       607 I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~at~~~~~~~  686 (916)
T 3pih_A          607 IPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPATYTKVFDE  686 (916)
T ss_dssp             EESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHHHHSSHHHH
T ss_pred             EcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccccchhhhHHH
Confidence                       00000  000                          0         00000       0          


Q ss_pred             ------------------------------ccccccccCCCCcccCC--------------------------------C
Q psy7365         369 ------------------------------PQKSYIGYCPQFDALND--------------------------------R  386 (601)
Q Consensus       369 ------------------------------~~~~~ig~v~Q~~~l~~--------------------------------~  386 (601)
                                                    +..+..|+++++..+++                                .
T Consensus       687 ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g~~i~~vl~  766 (916)
T 3pih_A          687 IRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKGKNISDILD  766 (916)
T ss_dssp             HHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTTBCHHHHHS
T ss_pred             HHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhccCCHHHHhh
Confidence                                          00011234444333322                                3


Q ss_pred             CCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCc-ccccccCcCChHHHHHHHHHHHHhCCC---CEEEEECCCCCCC
Q psy7365         387 LTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNT---PLIFLDEPTSGMD  462 (601)
Q Consensus       387 lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~-~~~~~~~~LSgGqkQRl~lA~AL~~~P---~lLlLDEPTsGLD  462 (601)
                      +|+.|++.|+...      ....++.++|+.+||.. ..++++.+|||||||||+||+||+.+|   ++|||||||+|||
T Consensus       767 ~tv~eal~f~~~~------~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD  840 (916)
T 3pih_A          767 MTVDEALEFFKNI------PSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLH  840 (916)
T ss_dssp             SBHHHHHHHTTTC------HHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCC
T ss_pred             CCHHHHHHHHhcc------hhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCC
Confidence            6788888775421      12345778999999974 468899999999999999999999875   7999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEE------eCCEEEEecCHHHHHHH
Q psy7365         463 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM------VNGQFTCLGSATHLKSK  520 (601)
Q Consensus       463 ~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL------~~G~iv~~G~~~~L~~~  520 (601)
                      +.+++.++++|++++++|.|||++|||++++.. ||||++|      ++|+|++.|+|+++.+.
T Consensus       841 ~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~  903 (916)
T 3pih_A          841 FEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVATGTPEEIAKN  903 (916)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEEEEEESSSGGGCCEEEEEESHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEEcCHHHHHhC
Confidence            999999999999998889999999999999865 9999999      89999999999999754

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=100.00  E-value=1.4e-43  Score=411.51  Aligned_cols=295  Identities=22%  Similarity=0.306  Sum_probs=225.1

Q ss_pred             CCCCCCHHHHHHHhHhhcCCCh----------HHHHHHHHHHHHHcCCCcc-cCCccccCChHHHhhhhchhhhcchhhH
Q psy7365         139 LFDKLTVEEHMWFYSQLKQVPK----------DLAQLEISNMIGDLGIPHK-RTSLANTLSGGMQRKLDNVKVWFNNKAW  207 (601)
Q Consensus       139 ~~~~~tv~e~l~~~~~~~~~~~----------~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~~qr~~~~~~~~~~~~~  207 (601)
                      .+..+||.|+++| .++.+++.          +++.+|+ +.|+.+||... .++.+.+||||||||++||++|.     
T Consensus       448 q~~~ltV~e~~~f-~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~-----  520 (972)
T 2r6f_A          448 EVTAMSVTEALAF-FDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIG-----  520 (972)
T ss_dssp             HHHTSBHHHHHHH-HHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHT-----
T ss_pred             HHhhCCHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHh-----
Confidence            4567999999999 56667776          3455666 56899999865 79999999999999998654322     


Q ss_pred             HHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCC
Q psy7365         208 IAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPT  287 (601)
Q Consensus       208 ~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPt  287 (601)
                                                       .+|                                 .|++|||||||
T Consensus       521 ---------------------------------~~~---------------------------------~~~llILDEPT  534 (972)
T 2r6f_A          521 ---------------------------------SRL---------------------------------TGVLYVLDEPS  534 (972)
T ss_dssp             ---------------------------------TCC---------------------------------CSCEEEEECTT
T ss_pred             ---------------------------------hCC---------------------------------CCCEEEEeCcc
Confidence                                             111                                 15899999999


Q ss_pred             CCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEe------cCCccccccCccccc---------
Q psy7365         288 SGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVFLK---------  352 (601)
Q Consensus       288 sgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL------~~GkIv~~G~~~lLk---------  352 (601)
                      +||||...+.++++|+++.     ..|.|||+||||++++. .||+|++|      .+|+++..|++..+.         
T Consensus       535 agLdp~~~~~L~~~L~~Lr-----~~G~TVIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~~~slt~~  608 (972)
T 2r6f_A          535 IGLHQRDNDRLIATLKSMR-----DLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQ  608 (972)
T ss_dssp             TTCCGGGHHHHHHHHHHHH-----TTTCEEEEECCCHHHHH-SCSEEEEECSSSGGGCCSEEEEECTTTTTTCTTCTTHH
T ss_pred             cCCCHHHHHHHHHHHHHHH-----hCCCEEEEEecCHHHHH-hCCEEEEeCCCccCCCCEEEEecCHHHHHhhhHHHHHH
Confidence            9999999999999999983     46999999999999875 79999999      578876655321100         


Q ss_pred             ----------------c--c-----------c-------------------cccc-----c-c-----------------
Q psy7365         353 ----------------N--S-----------F-------------------ARGY-----Y-L-----------------  361 (601)
Q Consensus       353 ----------------~--~-----------~-------------------g~g~-----~-i-----------------  361 (601)
                                      .  .           +                   |.|.     . .                 
T Consensus       609 ~l~g~~~~~~~~~~~~~~~~~L~v~~l~~~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~  688 (972)
T 2r6f_A          609 YLSGKKFIPIPAERRRPDGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGE  688 (972)
T ss_dssp             HHHTSSCCCCCSSCCCCCSCEEEEEEECSSSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCS
T ss_pred             HhcCCccccCccccccccceEEEEecCcccccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCc
Confidence                            0  0           0                   0000     0 0                 


Q ss_pred             -----c---------ccc-------CCc------------------ccccccccCCCCcccC------------------
Q psy7365         362 -----S---------LDM-------KSA------------------PQKSYIGYCPQFDALN------------------  384 (601)
Q Consensus       362 -----g---------ld~-------~~~------------------~~~~~ig~v~Q~~~l~------------------  384 (601)
                           |         ++.       .+.                  +..+.+||+||...+.                  
T Consensus       689 ~~~i~G~~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~e  768 (972)
T 2r6f_A          689 HRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIE  768 (972)
T ss_dssp             CSEEECGGGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEEC
T ss_pred             eeeeccccccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeee
Confidence                 0         000       000                  0013367877753321                  


Q ss_pred             ------------------------------------CCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCc-ccccc
Q psy7365         385 ------------------------------------DRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGH-YSDRE  427 (601)
Q Consensus       385 ------------------------------------~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~-~~~~~  427 (601)
                                                          ..+|+.|++.|+...   +  . ..+..++|+.++|.. ..+++
T Consensus       769 m~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~---~--~-~~~~~~~L~~~gL~~~~l~~~  842 (972)
T 2r6f_A          769 MHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI---P--K-IKRKLETLYDVGLGYMKLGQP  842 (972)
T ss_dssp             CSSSCCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC---H--H-HHHHHHHHHHTTCSSSBTTCC
T ss_pred             hhccccccccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc---h--h-HHHHHHHHHHcCCCcccccCc
Confidence                                                035777777765321   1  1 234578999999987 78999


Q ss_pred             cCcCChHHHHHHHHHHHHhCCC---CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEE-
Q psy7365         428 VRTLSGGNKRKLSTAIALLGNT---PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM-  503 (601)
Q Consensus       428 ~~~LSgGqkQRl~lA~AL~~~P---~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL-  503 (601)
                      +.+|||||||||+||++|+.+|   ++|||||||+|||+.+++.++++|++++++|.|||++|||++++ .+||||++| 
T Consensus       843 ~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIivL~  921 (972)
T 2r6f_A          843 ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYIIDLG  921 (972)
T ss_dssp             GGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEEC
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEEc
Confidence            9999999999999999999875   99999999999999999999999999988899999999999998 479999999 


Q ss_pred             -----eCCEEEEecCHHHHHH
Q psy7365         504 -----VNGQFTCLGSATHLKS  519 (601)
Q Consensus       504 -----~~G~iv~~G~~~~L~~  519 (601)
                           ++|++++.|+++++.+
T Consensus       922 p~gG~~~G~Iv~~g~~~el~~  942 (972)
T 2r6f_A          922 PEGGDRGGQIVAVGTPEEVAE  942 (972)
T ss_dssp             SSSTTSCCSEEEEESHHHHHT
T ss_pred             CCCCCCCCEEEEecCHHHHHh
Confidence                 7899999999999875

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=4.6e-44  Score=379.28  Aligned_cols=213  Identities=23%  Similarity=0.370  Sum_probs=185.0

Q ss_pred             cchhhhhccccccc-ccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEcccc
Q psy7365          46 GAYVSLFESLSENR-DKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHD  118 (601)
Q Consensus        46 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~  118 (601)
                      |.+...+++|+|.| ++    ..+++|+||++.+      +|||||  |||||      .|+|+|+++|++|+|.++|++
T Consensus        11 ~~~~l~~~~l~~~y~g~----~~vl~~vsl~i~~Ge~~~llGpnGs--GKSTL------Lr~iaGl~~p~~G~I~i~g~~   78 (355)
T 1z47_A           11 GSMTIEFVGVEKIYPGG----ARSVRGVSFQIREGEMVGLLGPSGS--GKTTI------LRLIAGLERPTKGDVWIGGKR   78 (355)
T ss_dssp             CCEEEEEEEEEECCTTS----TTCEEEEEEEEETTCEEEEECSTTS--SHHHH------HHHHHTSSCCSEEEEEETTEE
T ss_pred             CCceEEEEEEEEEEcCC----CEEEeeeEEEECCCCEEEEECCCCC--cHHHH------HHHHhCCCCCCccEEEECCEE
Confidence            33456699999998 43    4599999999988      999999  56654      579999999999999999999


Q ss_pred             CCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhch
Q psy7365         119 IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNV  198 (601)
Q Consensus       119 ~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~  198 (601)
                      +.... ..++.+|||||++.+|+++||+||+.|+....+.++++.++++.++++.+||.+..++++.+|||||||||+||
T Consensus        79 i~~~~-~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalA  157 (355)
T 1z47_A           79 VTDLP-PQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALA  157 (355)
T ss_dssp             CTTCC-GGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred             CCcCC-hhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHH
Confidence            85422 23678999999999999999999999998887888877888999999999999999999999999999999865


Q ss_pred             hhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCC
Q psy7365         199 KVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPA  278 (601)
Q Consensus       199 ~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  278 (601)
                      |||                                      +.+                                   |
T Consensus       158 rAL--------------------------------------~~~-----------------------------------P  164 (355)
T 1z47_A          158 RAL--------------------------------------APR-----------------------------------P  164 (355)
T ss_dssp             HHH--------------------------------------TTC-----------------------------------C
T ss_pred             HHH--------------------------------------HcC-----------------------------------C
Confidence            433                                      233                                   5


Q ss_pred             cEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       279 ~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      ++|||||||+|||+..+..+++.|+++.    +..|+|+|++|||++++..+|||+++|.+|+++..+++
T Consensus       165 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~----~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~  230 (355)
T 1z47_A          165 QVLLFDEPFAAIDTQIRRELRTFVRQVH----DEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTP  230 (355)
T ss_dssp             SEEEEESTTCCSSHHHHHHHHHHHHHHH----HHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence            8999999999999999999999999884    22489999999999999999999999999999877654

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=8.8e-44  Score=357.50  Aligned_cols=212  Identities=20%  Similarity=0.271  Sum_probs=177.5

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc-h
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD-M  123 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~-~  123 (601)
                      .++||++.|++.....++|+|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++... .
T Consensus         3 ~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGs--GKSTL------l~~l~Gl~~p~~G~I~~~g~~~~~~~~   74 (235)
T 3tif_A            3 KLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGS--GKSTM------LNIIGCLDKPTEGEVYIDNIKTNDLDD   74 (235)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTS--SHHHH------HHHHTTSSCCSEEEEEETTEECTTCCH
T ss_pred             EEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCC--cHHHH------HHHHhcCCCCCceEEEECCEEcccCCH
Confidence            4789999987544346799999999988      999999  56655      5799999999999999999998642 2


Q ss_pred             H---H-hcccEEEEccCCCCCCCCCHHHHHHHhHhhc---CCChHHHHHHHHHHHHHcCCCcc-cCCccccCChHHHhhh
Q psy7365         124 T---T-IRRSLGVCPQYNALFDKLTVEEHMWFYSQLK---QVPKDLAQLEISNMIGDLGIPHK-RTSLANTLSGGMQRKL  195 (601)
Q Consensus       124 ~---~-~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~~qr~  195 (601)
                      .   . .++.+|||||+|.+|+.+||+||+.|+....   +.+.++..+++.++++.+|+.+. .++++.+||||||||+
T Consensus        75 ~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv  154 (235)
T 3tif_A           75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRV  154 (235)
T ss_dssp             HHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHH
T ss_pred             HHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHH
Confidence            1   1 2346999999999999999999999977544   45666777889999999999985 5999999999999999


Q ss_pred             hchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhcc
Q psy7365         196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSF  275 (601)
Q Consensus       196 ~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  275 (601)
                      ++||||                                      +++                                 
T Consensus       155 ~iAral--------------------------------------~~~---------------------------------  163 (235)
T 3tif_A          155 AIARAL--------------------------------------ANN---------------------------------  163 (235)
T ss_dssp             HHHHHH--------------------------------------TTC---------------------------------
T ss_pred             HHHHHH--------------------------------------HcC---------------------------------
Confidence            865443                                      233                                 


Q ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       276 ~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                        |++|||||||+|||+.++..++++|+++.    +..|+|||++|||++.+ .+|||+++|.+|+++..++.
T Consensus       164 --p~llllDEPts~LD~~~~~~i~~~l~~l~----~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~~~  229 (235)
T 3tif_A          164 --PPIILADQPTWALDSKTGEKIMQLLKKLN----EEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKL  229 (235)
T ss_dssp             --CSEEEEESTTTTSCHHHHHHHHHHHHHHH----HHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEEC
T ss_pred             --CCEEEEeCCcccCCHHHHHHHHHHHHHHH----HHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEcCh
Confidence              58999999999999999999999999984    22489999999999965 79999999999999876543

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=1.4e-43  Score=353.52  Aligned_cols=208  Identities=22%  Similarity=0.278  Sum_probs=178.5

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      +..++||++.|++    .++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++...
T Consensus         4 ~l~~~~l~~~y~~----~~~l~~vsl~i~~Ge~~~iiG~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~~~~~   71 (224)
T 2pcj_A            4 ILRAENIKKVIRG----YEILKGISLSVKKGEFVSIIGASGS--GKSTL------LYILGLLDAPTEGKVFLEGKEVDYT   71 (224)
T ss_dssp             EEEEEEEEEEETT----EEEEEEEEEEEETTCEEEEEECTTS--CHHHH------HHHHTTSSCCSEEEEEETTEECCSS
T ss_pred             EEEEEeEEEEECC----EeeEeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCceEEEECCEECCCC
Confidence            3568999999864    4699999999988      999999  56655      5799999999999999999998542


Q ss_pred             -h---HHhc-ccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhc
Q psy7365         123 -M---TTIR-RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDN  197 (601)
Q Consensus       123 -~---~~~~-~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~  197 (601)
                       .   ...+ +.+||+||++.+|+++||+||+.|+....+.++++.++++.++++.+||.+..++++.+||||||||+++
T Consensus        72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~l  151 (224)
T 2pcj_A           72 NEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAI  151 (224)
T ss_dssp             CHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHH
T ss_pred             CHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence             1   1233 6799999999999999999999998777777666667789999999999999999999999999999986


Q ss_pred             hhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCC
Q psy7365         198 VKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVP  277 (601)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  277 (601)
                      ||||+                                      ++                                   
T Consensus       152 aral~--------------------------------------~~-----------------------------------  158 (224)
T 2pcj_A          152 ARALA--------------------------------------NE-----------------------------------  158 (224)
T ss_dssp             HHHTT--------------------------------------TC-----------------------------------
T ss_pred             HHHHH--------------------------------------cC-----------------------------------
Confidence            54332                                      33                                   


Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                      |+++||||||+|||+.++..++++|+++.     .+|+|||++|||++++ .+||++++|.+|+++..|+
T Consensus       159 p~lllLDEPt~~LD~~~~~~~~~~l~~l~-----~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~  222 (224)
T 2pcj_A          159 PILLFADEPTGNLDSANTKRVMDIFLKIN-----EGGTSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT  222 (224)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHHHHHH-----HTTCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence            58999999999999999999999999883     2489999999999987 8999999999999887664

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=1.2e-43  Score=362.26  Aligned_cols=210  Identities=21%  Similarity=0.354  Sum_probs=180.5

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCC--
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIR--  120 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~--  120 (601)
                      +..++||++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.  
T Consensus        24 ~l~i~~l~~~y~~----~~vL~~vsl~i~~Gei~~liG~NGs--GKSTL------lk~l~Gl~~p~~G~I~~~g~~i~~~   91 (263)
T 2olj_A           24 MIDVHQLKKSFGS----LEVLKGINVHIREGEVVVVIGPSGS--GKSTF------LRCLNLLEDFDEGEIIIDGINLKAK   91 (263)
T ss_dssp             SEEEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTS--SHHHH------HHHHTTSSCCSEEEEEETTEESSST
T ss_pred             eEEEEeEEEEECC----EEEEEeeEEEEcCCCEEEEEcCCCC--cHHHH------HHHHHcCCCCCCcEEEECCEECCCc
Confidence            4669999999853    4599999999988      999999  56655      57999999999999999999884  


Q ss_pred             -CchHHhcccEEEEccCCCCCCCCCHHHHHHHhH-hhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhch
Q psy7365         121 -TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYS-QLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNV  198 (601)
Q Consensus       121 -~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~  198 (601)
                       ......++.+|||||++.+|+.+||+||+.|+. ...+.+.++.++++.++++.+||.+..++++.+||||||||+++|
T Consensus        92 ~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lA  171 (263)
T 2olj_A           92 DTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIA  171 (263)
T ss_dssp             TCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred             cccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHH
Confidence             223345678999999999999999999999965 555666666677899999999999999999999999999999865


Q ss_pred             hhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCC
Q psy7365         199 KVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPA  278 (601)
Q Consensus       199 ~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  278 (601)
                      |||                                      +.+                                   |
T Consensus       172 raL--------------------------------------~~~-----------------------------------p  178 (263)
T 2olj_A          172 RAL--------------------------------------AME-----------------------------------P  178 (263)
T ss_dssp             HHH--------------------------------------TTC-----------------------------------C
T ss_pred             HHH--------------------------------------HCC-----------------------------------C
Confidence            433                                      233                                   5


Q ss_pred             cEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       279 ~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      ++|||||||+||||.++..++++|+++.     .+|+|||++|||++++..+||++++|.+|+++..+++
T Consensus       179 ~lllLDEPts~LD~~~~~~~~~~l~~l~-----~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~  243 (263)
T 2olj_A          179 KIMLFDEPTSALDPEMVGEVLSVMKQLA-----NEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKP  243 (263)
T ss_dssp             SEEEEESTTTTSCHHHHHHHHHHHHHHH-----HTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHH-----hCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence            8999999999999999999999999883     2489999999999999999999999999999876654

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=6.4e-44  Score=364.12  Aligned_cols=210  Identities=21%  Similarity=0.302  Sum_probs=179.9

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-  121 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-  121 (601)
                      +..+++|++.|++    .++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. 
T Consensus         6 ~l~i~~l~~~y~~----~~vl~~vsl~i~~Ge~~~liG~nGs--GKSTL------lk~l~Gl~~p~~G~i~~~g~~~~~~   73 (262)
T 1b0u_A            6 KLHVIDLHKRYGG----HEVLKGVSLQARAGDVISIIGSSGS--GKSTF------LRCINFLEKPSEGAIIVNGQNINLV   73 (262)
T ss_dssp             CEEEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTS--SHHHH------HHHHTTSSCCSEEEEEETTEECCEE
T ss_pred             eEEEeeEEEEECC----EEEEEeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCcEEEECCEEcccc
Confidence            4669999999863    4599999999988      999999  56655      579999999999999999998851 


Q ss_pred             ----------c---hHHhcccEEEEccCCCCCCCCCHHHHHHHhH-hhcCCChHHHHHHHHHHHHHcCCCcc-cCCcccc
Q psy7365         122 ----------D---MTTIRRSLGVCPQYNALFDKLTVEEHMWFYS-QLKQVPKDLAQLEISNMIGDLGIPHK-RTSLANT  186 (601)
Q Consensus       122 ----------~---~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~  186 (601)
                                .   ....++.+|||||++.+|+.+||+||+.|+. ...+.++++.++++.++++.+||.+. .++++.+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~  153 (262)
T 1b0u_A           74 RDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVH  153 (262)
T ss_dssp             ECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGG
T ss_pred             ccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCccc
Confidence                      1   1234678999999999999999999999965 45566666667789999999999998 9999999


Q ss_pred             CChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHH
Q psy7365         187 LSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVA  266 (601)
Q Consensus       187 LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a  266 (601)
                      |||||||||++||||                                      +++                        
T Consensus       154 LSgGq~qRv~lAraL--------------------------------------~~~------------------------  171 (262)
T 1b0u_A          154 LSGGQQQRVSIARAL--------------------------------------AME------------------------  171 (262)
T ss_dssp             SCHHHHHHHHHHHHH--------------------------------------HTC------------------------
T ss_pred             CCHHHHHHHHHHHHH--------------------------------------hcC------------------------
Confidence            999999999865432                                      333                        


Q ss_pred             HHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccccc
Q psy7365         267 VTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  346 (601)
Q Consensus       267 ~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G  346 (601)
                                 |++|||||||+|||+.++..++++|+++.     .+|+|||++|||++++..+||++++|.+|+++..+
T Consensus       172 -----------p~lllLDEPts~LD~~~~~~~~~~l~~l~-----~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g  235 (262)
T 1b0u_A          172 -----------PDVLLFDEPTSALDPELVGEVLRIMQQLA-----EEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG  235 (262)
T ss_dssp             -----------CSEEEEESTTTTSCHHHHHHHHHHHHHHH-----HTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred             -----------CCEEEEeCCCccCCHHHHHHHHHHHHHHH-----hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence                       58999999999999999999999999883     24899999999999999999999999999998766


Q ss_pred             Cc
Q psy7365         347 SS  348 (601)
Q Consensus       347 ~~  348 (601)
                      ++
T Consensus       236 ~~  237 (262)
T 1b0u_A          236 DP  237 (262)
T ss_dssp             CH
T ss_pred             CH
Confidence            54

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=1.5e-43  Score=360.26  Aligned_cols=211  Identities=23%  Similarity=0.353  Sum_probs=182.8

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT  121 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~  121 (601)
                      .++.+++|++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++..
T Consensus        14 ~~l~i~~l~~~y~~----~~vl~~vsl~i~~Gei~~l~G~NGs--GKSTL------lk~l~Gl~~p~~G~I~~~g~~~~~   81 (256)
T 1vpl_A           14 GAVVVKDLRKRIGK----KEILKGISFEIEEGEIFGLIGPNGA--GKTTT------LRIISTLIKPSSGIVTVFGKNVVE   81 (256)
T ss_dssp             CCEEEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTS--SHHHH------HHHHTTSSCCSEEEEEETTEETTT
T ss_pred             CeEEEEEEEEEECC----EEEEEeeEEEEcCCcEEEEECCCCC--CHHHH------HHHHhcCCCCCceEEEECCEECCc
Confidence            34568999999853    4699999999988      999999  56655      579999999999999999999865


Q ss_pred             chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhh
Q psy7365         122 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVW  201 (601)
Q Consensus       122 ~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~  201 (601)
                      .....++.+||+||++.+|+.+||+||+.|+...++.+.++.++++.++++.+||.+..++++.+||||||||+++||||
T Consensus        82 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL  161 (256)
T 1vpl_A           82 EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARAL  161 (256)
T ss_dssp             CHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHH
T ss_pred             cHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence            44556778999999999999999999999987767777666667889999999999999999999999999999865433


Q ss_pred             cchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEE
Q psy7365         202 FNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTV  281 (601)
Q Consensus       202 ~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~l  281 (601)
                                                            +++                                   |++|
T Consensus       162 --------------------------------------~~~-----------------------------------p~ll  168 (256)
T 1vpl_A          162 --------------------------------------MVN-----------------------------------PRLA  168 (256)
T ss_dssp             --------------------------------------TTC-----------------------------------CSEE
T ss_pred             --------------------------------------HcC-----------------------------------CCEE
Confidence                                                  233                                   5899


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       282 iLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      ||||||+|||+.++..++++|+++.     .+|+|||++|||++++..+||++++|.+|+++..+++
T Consensus       169 lLDEPts~LD~~~~~~l~~~l~~l~-----~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  230 (256)
T 1vpl_A          169 ILDEPTSGLDVLNAREVRKILKQAS-----QEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTV  230 (256)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHH-----HTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEH
T ss_pred             EEeCCccccCHHHHHHHHHHHHHHH-----hCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCH
Confidence            9999999999999999999999873     3589999999999999999999999999998876643

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.3e-43  Score=376.84  Aligned_cols=210  Identities=25%  Similarity=0.354  Sum_probs=183.1

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM  123 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~  123 (601)
                      ..++||++.|++    ..+++|+||++.+      +|||||  |||||      .|+|+|+++|++|+|.++|+++....
T Consensus         4 l~~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~llGpnGs--GKSTL------Lr~iaGl~~p~~G~I~i~g~~i~~~~   71 (362)
T 2it1_A            4 IKLENIVKKFGN----FTALNNINLKIKDGEFMALLGPSGS--GKSTL------LYTIAGIYKPTSGKIYFDEKDVTELP   71 (362)
T ss_dssp             EEEEEEEEESSS----SEEEEEEEEEECTTCEEEEECCTTS--SHHHH------HHHHHTSSCCSEEEEEETTEECTTSC
T ss_pred             EEEEeEEEEECC----EEEEEeeEEEECCCCEEEEECCCCc--hHHHH------HHHHhcCCCCCceEEEECCEECCcCC
Confidence            458999999854    4599999999987      999999  56654      57999999999999999999985422


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcc
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFN  203 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~  203 (601)
                      . .++.+|||||++.+|+++||+||+.|+....+.++++.++++.++++.+||.+..++++.+|||||||||++||||  
T Consensus        72 ~-~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL--  148 (362)
T 2it1_A           72 P-KDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARAL--  148 (362)
T ss_dssp             G-GGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHH--
T ss_pred             H-hHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHH--
Confidence            2 2568999999999999999999999998877888777788999999999999999999999999999999865433  


Q ss_pred             hhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEE
Q psy7365         204 NKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVIL  283 (601)
Q Consensus       204 ~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liL  283 (601)
                                                          +.+                                   |++|||
T Consensus       149 ------------------------------------~~~-----------------------------------P~lLLL  157 (362)
T 2it1_A          149 ------------------------------------VKE-----------------------------------PEVLLL  157 (362)
T ss_dssp             ------------------------------------TTC-----------------------------------CSEEEE
T ss_pred             ------------------------------------HcC-----------------------------------CCEEEE
Confidence                                                333                                   589999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       284 DEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                      ||||+|||+..+..+++.|+++.    +..|+|+|++|||++++..+|||+++|.+|+++..|++.
T Consensus       158 DEP~s~LD~~~r~~l~~~l~~l~----~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~  219 (362)
T 2it1_A          158 DEPLSNLDALLRLEVRAELKRLQ----KELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPD  219 (362)
T ss_dssp             ESGGGGSCHHHHHHHHHHHHHHH----HHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred             ECccccCCHHHHHHHHHHHHHHH----HhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence            99999999999999999999984    224899999999999999999999999999998777543

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=9.2e-44  Score=377.67  Aligned_cols=210  Identities=26%  Similarity=0.314  Sum_probs=181.9

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM  123 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~  123 (601)
                      ..+++|+|.|++    ..+++|+||++.+      +|||||  |||||      .|+|+|+++|++|+|.++|+++....
T Consensus         4 l~~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~llGpnGs--GKSTL------Lr~iaGl~~p~~G~I~i~g~~i~~~~   71 (359)
T 2yyz_A            4 IRVVNLKKYFGK----VKAVDGVSFEVKDGEFVALLGPSGC--GKTTT------LLMLAGIYKPTSGEIYFDDVLVNDIP   71 (359)
T ss_dssp             EEEEEEEEEETT----EEEEEEEEEEECTTCEEEEECSTTS--SHHHH------HHHHHTSSCCSEEEEEETTEECTTSC
T ss_pred             EEEEEEEEEECC----EEEEeeeEEEEcCCCEEEEEcCCCc--hHHHH------HHHHHCCCCCCccEEEECCEECCCCC
Confidence            458999999964    4599999999987      999999  56654      57999999999999999999985422


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcc
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFN  203 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~  203 (601)
                      . .++.+|||||++.+|+++||+||+.|+....+.++++.++++.++++.+||.+..++++.+|||||||||++||||  
T Consensus        72 ~-~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL--  148 (359)
T 2yyz_A           72 P-KYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARAL--  148 (359)
T ss_dssp             G-GGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH--
T ss_pred             h-hhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH--
Confidence            2 3568999999999999999999999988777776666677899999999999999999999999999999865433  


Q ss_pred             hhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEE
Q psy7365         204 NKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVIL  283 (601)
Q Consensus       204 ~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liL  283 (601)
                                                          +.+                                   |++|||
T Consensus       149 ------------------------------------~~~-----------------------------------P~lLLL  157 (359)
T 2yyz_A          149 ------------------------------------VKQ-----------------------------------PKVLLF  157 (359)
T ss_dssp             ------------------------------------TTC-----------------------------------CSEEEE
T ss_pred             ------------------------------------HcC-----------------------------------CCEEEE
Confidence                                                233                                   589999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       284 DEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                      ||||+|||+..+..+++.|+++.    +..|+|+|++|||++++..+|||+++|.+|+++..|++.
T Consensus       158 DEP~s~LD~~~r~~l~~~l~~l~----~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~  219 (359)
T 2yyz_A          158 DEPLSNLDANLRMIMRAEIKHLQ----QELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPD  219 (359)
T ss_dssp             ESTTTTSCHHHHHHHHHHHHHHH----HHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred             ECCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            99999999999999999999884    234899999999999999999999999999998877653

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=1.9e-43  Score=377.16  Aligned_cols=211  Identities=27%  Similarity=0.350  Sum_probs=183.1

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc-
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD-  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~-  122 (601)
                      ..++||+|.|++    ..+|+|+||++.+      +|||||  |||||      .|+|+|+++|++|+|.++|+++... 
T Consensus         4 l~~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~llGpnGs--GKSTL------Lr~iaGl~~p~~G~I~i~g~~~~~~~   71 (372)
T 1g29_1            4 VRLVDVWKVFGE----VTAVREMSLEVKDGEFMILLGPSGC--GKTTT------LRMIAGLEEPSRGQIYIGDKLVADPE   71 (372)
T ss_dssp             EEEEEEEEEETT----EEEEEEEEEEEETTCEEEEECSTTS--SHHHH------HHHHHTSSCCSEEEEEETTEEEEEGG
T ss_pred             EEEEeEEEEECC----EEEEeeeEEEEcCCCEEEEECCCCc--HHHHH------HHHHHcCCCCCccEEEECCEECcccc
Confidence            458999999864    4599999999988      999999  56654      5799999999999999999987430 


Q ss_pred             ----hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhch
Q psy7365         123 ----MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNV  198 (601)
Q Consensus       123 ----~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~  198 (601)
                          ....++.+|||||++.+|+++||+||+.|+....+.++++.++++.++++.+||.+..++++.+|||||||||++|
T Consensus        72 ~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalA  151 (372)
T 1g29_1           72 KGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALG  151 (372)
T ss_dssp             GTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred             ccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHH
Confidence                1123568999999999999999999999998888888887888999999999999999999999999999999865


Q ss_pred             hhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCC
Q psy7365         199 KVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPA  278 (601)
Q Consensus       199 ~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  278 (601)
                      |||                                      +.+                                   |
T Consensus       152 rAL--------------------------------------~~~-----------------------------------P  158 (372)
T 1g29_1          152 RAI--------------------------------------VRK-----------------------------------P  158 (372)
T ss_dssp             HHH--------------------------------------HTC-----------------------------------C
T ss_pred             HHH--------------------------------------hcC-----------------------------------C
Confidence            433                                      333                                   5


Q ss_pred             cEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       279 ~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                      ++|||||||++||+..+..+++.|+++.    +..|+|+|++|||++++..+|||+++|.+|+++..|++.
T Consensus       159 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~----~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~  225 (372)
T 1g29_1          159 QVFLMDEPLSNLDAKLRVRMRAELKKLQ----RQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPD  225 (372)
T ss_dssp             SEEEEECTTTTSCHHHHHHHHHHHHHHH----HHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred             CEEEECCCCccCCHHHHHHHHHHHHHHH----HhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHH
Confidence            8999999999999999999999999884    234899999999999999999999999999998877653

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=1.5e-43  Score=377.70  Aligned_cols=211  Identities=26%  Similarity=0.321  Sum_probs=176.1

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      ...+++|+|.|++    ..+++|+||++.+      +|||||  |||||      .|+|+|+++|++|+|.++|+++...
T Consensus        11 ~l~~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~llGpnGs--GKSTL------Lr~iaGl~~p~~G~I~i~g~~i~~~   78 (372)
T 1v43_A           11 EVKLENLTKRFGN----FTAVNKLNLTIKDGEFLVLLGPSGC--GKTTT------LRMIAGLEEPTEGRIYFGDRDVTYL   78 (372)
T ss_dssp             CEEEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTS--SHHHH------HHHHHTSSCCSEEEEEETTEECTTS
T ss_pred             eEEEEEEEEEECC----EEEEeeeEEEECCCCEEEEECCCCC--hHHHH------HHHHHcCCCCCceEEEECCEECCCC
Confidence            3569999999964    4599999999987      999999  56654      5799999999999999999998542


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhc
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWF  202 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~  202 (601)
                      .. .++.+|||||++.+|+++||+||+.|+...++.++++.++++.++++.+||.+..++++.+|||||||||++|||| 
T Consensus        79 ~~-~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL-  156 (372)
T 1v43_A           79 PP-KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAI-  156 (372)
T ss_dssp             CG-GGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHH-
T ss_pred             Ch-hhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH-
Confidence            22 2568999999999999999999999988777788777788999999999999999999999999999999865433 


Q ss_pred             chhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEE
Q psy7365         203 NNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVI  282 (601)
Q Consensus       203 ~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~li  282 (601)
                                                           +.+                                   |++||
T Consensus       157 -------------------------------------~~~-----------------------------------P~lLL  164 (372)
T 1v43_A          157 -------------------------------------VVE-----------------------------------PDVLL  164 (372)
T ss_dssp             -------------------------------------TTC-----------------------------------CSEEE
T ss_pred             -------------------------------------hcC-----------------------------------CCEEE
Confidence                                                 233                                   58999


Q ss_pred             EecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       283 LDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                      |||||++||+..+..+++.|+++.    +..|+|+|++|||++++..+|||+++|.+|+++..|++.
T Consensus       165 LDEP~s~LD~~~r~~l~~~l~~l~----~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~  227 (372)
T 1v43_A          165 MDEPLSNLDAKLRVAMRAEIKKLQ----QKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPT  227 (372)
T ss_dssp             EESTTTTSCHHHHHHHHHHHHHHH----HHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred             EcCCCccCCHHHHHHHHHHHHHHH----HhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            999999999999999999999884    224899999999999999999999999999998777553

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=1e-43  Score=376.95  Aligned_cols=210  Identities=24%  Similarity=0.350  Sum_probs=182.0

Q ss_pred             hhhcccccccccCCCccc--eeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC
Q psy7365          50 SLFESLSENRDKLGIDSY--GISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT  121 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~  121 (601)
                      ..+++|+|.|++    ..  +++|+||++.+      +|||||  |||||      .|+|+|+++|++|+|.++|+++..
T Consensus         4 l~i~~l~~~y~~----~~~~vl~~vsl~i~~Ge~~~llGpnGs--GKSTL------Lr~iaGl~~p~~G~I~i~g~~i~~   71 (353)
T 1oxx_K            4 IIVKNVSKVFKK----GKVVALDNVNINIENGERFGILGPSGA--GKTTF------MRIIAGLDVPSTGELYFDDRLVAS   71 (353)
T ss_dssp             EEEEEEEEEEGG----GTEEEEEEEEEEECTTCEEEEECSCHH--HHHHH------HHHHHTSSCCSEEEEEETTEEEEE
T ss_pred             EEEEeEEEEECC----EeeeeEeceEEEECCCCEEEEECCCCC--cHHHH------HHHHhCCCCCCceEEEECCEECcc
Confidence            458999999864    45  99999999987      999999  56554      579999999999999999998743


Q ss_pred             c----hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhc
Q psy7365         122 D----MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDN  197 (601)
Q Consensus       122 ~----~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~  197 (601)
                      .    ....++.+|||||++.+|+++||+||+.|+...++.++++.++++.++++.+||.+..++++.+|||||||||++
T Consensus        72 ~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRval  151 (353)
T 1oxx_K           72 NGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVAL  151 (353)
T ss_dssp             TTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHH
T ss_pred             cccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHH
Confidence            1    223467899999999999999999999999877778877778899999999999999999999999999999986


Q ss_pred             hhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCC
Q psy7365         198 VKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVP  277 (601)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  277 (601)
                      ||||                                      +.+                                   
T Consensus       152 AraL--------------------------------------~~~-----------------------------------  158 (353)
T 1oxx_K          152 ARAL--------------------------------------VKD-----------------------------------  158 (353)
T ss_dssp             HHHH--------------------------------------TTC-----------------------------------
T ss_pred             HHHH--------------------------------------HhC-----------------------------------
Confidence            5433                                      233                                   


Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      |++|||||||+|||+..+..+++.|+++.    +..|+|+|++|||++++..+|||+++|.+|+++..+++
T Consensus       159 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~----~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~  225 (353)
T 1oxx_K          159 PSLLLLDEPFSNLDARMRDSARALVKEVQ----SRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKP  225 (353)
T ss_dssp             CSEEEEESTTTTSCGGGHHHHHHHHHHHH----HHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence            58999999999999999999999999884    23489999999999999999999999999999876654

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=2.5e-43  Score=358.70  Aligned_cols=210  Identities=18%  Similarity=0.268  Sum_probs=178.6

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      +..++||++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++...
T Consensus         7 ~l~i~~l~~~y~~----~~vl~~vsl~i~~Ge~~~liG~nGs--GKSTL------lk~l~Gl~~p~~G~i~~~g~~~~~~   74 (257)
T 1g6h_A            7 ILRTENIVKYFGE----FKALDGVSISVNKGDVTLIIGPNGS--GKSTL------INVITGFLKADEGRVYFENKDITNK   74 (257)
T ss_dssp             EEEEEEEEEEETT----EEEEEEECCEEETTCEEEEECSTTS--SHHHH------HHHHTTSSCCSEEEEEETTEECTTC
T ss_pred             EEEEeeeEEEECC----EeeEeeeEEEEeCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCcEEEECCEECCCC
Confidence            4569999999864    4599999999988      999999  56665      5799999999999999999998542


Q ss_pred             --hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhh--cC-----------CChHHHHHHHHHHHHHcCCCcccCCccccC
Q psy7365         123 --MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL--KQ-----------VPKDLAQLEISNMIGDLGIPHKRTSLANTL  187 (601)
Q Consensus       123 --~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~--~~-----------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L  187 (601)
                        ....++.+||+||++.+|+.+||.||+.|+...  .+           .++.+.++++.++++.+||.+..++++.+|
T Consensus        75 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L  154 (257)
T 1g6h_A           75 EPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGEL  154 (257)
T ss_dssp             CHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGS
T ss_pred             CHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhC
Confidence              233466899999999999999999999987644  23           344555678899999999999999999999


Q ss_pred             ChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHH
Q psy7365         188 SGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAV  267 (601)
Q Consensus       188 SgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~  267 (601)
                      ||||||||++||||                                      +++                         
T Consensus       155 SgGqkQrv~iAraL--------------------------------------~~~-------------------------  171 (257)
T 1g6h_A          155 SGGQMKLVEIGRAL--------------------------------------MTN-------------------------  171 (257)
T ss_dssp             CHHHHHHHHHHHHH--------------------------------------HTC-------------------------
T ss_pred             CHHHHHHHHHHHHH--------------------------------------HcC-------------------------
Confidence            99999999865433                                      233                         


Q ss_pred             HHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         268 TVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       268 ~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                                |++|||||||+|||+.++..++++|+++.     .+|+|||++|||++++..+||++++|.+|+++..+.
T Consensus       172 ----------p~lllLDEPts~LD~~~~~~l~~~l~~l~-----~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~  236 (257)
T 1g6h_A          172 ----------PKMIVMDEPIAGVAPGLAHDIFNHVLELK-----AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR  236 (257)
T ss_dssp             ----------CSEEEEESTTTTCCHHHHHHHHHHHHHHH-----HTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred             ----------CCEEEEeCCccCCCHHHHHHHHHHHHHHH-----HCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeC
Confidence                      58999999999999999999999999883     348999999999999999999999999999987664


Q ss_pred             c
Q psy7365         348 S  348 (601)
Q Consensus       348 ~  348 (601)
                      +
T Consensus       237 ~  237 (257)
T 1g6h_A          237 G  237 (257)
T ss_dssp             S
T ss_pred             H
Confidence            4

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=4.3e-43  Score=358.80  Aligned_cols=217  Identities=24%  Similarity=0.307  Sum_probs=181.2

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT  121 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~  121 (601)
                      .+..+++|++.|++    .++|+|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|+++..
T Consensus        10 ~~l~~~~l~~~~~~----~~vL~~vsl~i~~Ge~~~liG~nGs--GKSTL------l~~l~Gl~~p~~G~I~~~g~~~~~   77 (266)
T 4g1u_C           10 ALLEASHLHYHVQQ----QALINDVSLHIASGEMVAIIGPNGA--GKSTL------LRLLTGYLSPSHGECHLLGQNLNS   77 (266)
T ss_dssp             CEEEEEEEEEEETT----EEEEEEEEEEEETTCEEEEECCTTS--CHHHH------HHHHTSSSCCSSCEEEETTEETTT
T ss_pred             ceEEEEeEEEEeCC----eeEEEeeEEEEcCCCEEEEECCCCC--cHHHH------HHHHhcCCCCCCcEEEECCEECCc
Confidence            45669999999864    4699999999988      999999  56655      579999999999999999999864


Q ss_pred             -chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh
Q psy7365         122 -DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV  200 (601)
Q Consensus       122 -~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~  200 (601)
                       .....++.+||+||++.+++.+||+||+.|+...+.  ..+.++++.++++.+|+.+..++++.+||||||||++||||
T Consensus        78 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAra  155 (266)
T 4g1u_C           78 WQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYG--GSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARV  155 (266)
T ss_dssp             SCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSC--STTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHH
T ss_pred             CCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcC--cHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHH
Confidence             344556789999999999889999999999876542  33456778999999999999999999999999999986554


Q ss_pred             hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcE
Q psy7365         201 WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAST  280 (601)
Q Consensus       201 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  280 (601)
                      |++-                                    . |                              .-..|++
T Consensus       156 L~~~------------------------------------~-~------------------------------~~~~p~l  168 (266)
T 4g1u_C          156 LAQL------------------------------------W-Q------------------------------PQPTPRW  168 (266)
T ss_dssp             HHHT------------------------------------C-C------------------------------SSCCCEE
T ss_pred             Hhcc------------------------------------c-c------------------------------cCCCCCE
Confidence            3320                                    0 0                              0002689


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       281 liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                      |||||||+||||.++..++++|+++.    +..|+|||++|||++++..+|||+++|.+|+++..+++.
T Consensus       169 LllDEPts~LD~~~~~~i~~~l~~l~----~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~  233 (266)
T 4g1u_C          169 LFLDEPTSALDLYHQQHTLRLLRQLT----RQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPE  233 (266)
T ss_dssp             EEECCCCSSCCHHHHHHHHHHHHHHH----HHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHHH----HcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence            99999999999999999999999984    234689999999999999999999999999999887654

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=7.3e-43  Score=369.50  Aligned_cols=204  Identities=26%  Similarity=0.396  Sum_probs=176.8

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchH
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMT  124 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~  124 (601)
                      .++||+|.|++    . +++|+||++.+      +|||||  |||||      .|+|+|+++|++|+|.++|+++.... 
T Consensus         3 ~~~~l~~~y~~----~-~l~~vsl~i~~Ge~~~llGpnGs--GKSTL------Lr~iaGl~~p~~G~I~~~g~~i~~~~-   68 (348)
T 3d31_A            3 EIESLSRKWKN----F-SLDNLSLKVESGEYFVILGPTGA--GKTLF------LELIAGFHVPDSGRILLDGKDVTDLS-   68 (348)
T ss_dssp             EEEEEEEECSS----C-EEEEEEEEECTTCEEEEECCCTH--HHHHH------HHHHHTSSCCSEEEEEETTEECTTSC-
T ss_pred             EEEEEEEEECC----E-EEeeeEEEEcCCCEEEEECCCCc--cHHHH------HHHHHcCCCCCCcEEEECCEECCCCc-
Confidence            47899999853    4 99999999988      999999  55554      57999999999999999999986422 


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcch
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNN  204 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~  204 (601)
                      ..++.+|||||++.+|+++||+||+.|+...++.+++   +++.++++.+||++..++++.+|||||||||++||||   
T Consensus        69 ~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL---  142 (348)
T 3d31_A           69 PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARAL---  142 (348)
T ss_dssp             HHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHT---
T ss_pred             hhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH---
Confidence            2356899999999999999999999998877666554   6789999999999999999999999999999865443   


Q ss_pred             hhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEe
Q psy7365         205 KAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILD  284 (601)
Q Consensus       205 ~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLD  284 (601)
                                                         +.+                                   |++||||
T Consensus       143 -----------------------------------~~~-----------------------------------P~lLLLD  152 (348)
T 3d31_A          143 -----------------------------------VTN-----------------------------------PKILLLD  152 (348)
T ss_dssp             -----------------------------------TSC-----------------------------------CSEEEEE
T ss_pred             -----------------------------------HcC-----------------------------------CCEEEEE
Confidence                                               233                                   5899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         285 EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       285 EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      |||+|||+..+..+++.|+++.    +..|+|+|++|||++++..+|||+++|.+|+++..+++
T Consensus       153 EP~s~LD~~~~~~l~~~l~~l~----~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~  212 (348)
T 3d31_A          153 EPLSALDPRTQENAREMLSVLH----KKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKP  212 (348)
T ss_dssp             SSSTTSCHHHHHHHHHHHHHHH----HHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECH
T ss_pred             CccccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence            9999999999999999999984    23589999999999999999999999999999877654

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=1.1e-42  Score=350.65  Aligned_cols=209  Identities=21%  Similarity=0.299  Sum_probs=175.9

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      +..+++|++.|++    .++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|+++...
T Consensus         6 ~l~~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~l~G~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~~~~~   73 (240)
T 1ji0_A            6 VLEVQSLHVYYGA----IHAIKGIDLKVPRGQIVTLIGANGA--GKTTT------LSAIAGLVRAQKGKIIFNGQDITNK   73 (240)
T ss_dssp             EEEEEEEEEEETT----EEEEEEEEEEEETTCEEEEECSTTS--SHHHH------HHHHTTSSCCSEEEEEETTEECTTC
T ss_pred             eEEEEeEEEEECC----eeEEeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCceEEECCEECCCC
Confidence            4669999999864    4599999999988      999999  56655      5799999999999999999998542


Q ss_pred             -hH-HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcC-CCcccCCccccCChHHHhhhhchh
Q psy7365         123 -MT-TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLG-IPHKRTSLANTLSGGMQRKLDNVK  199 (601)
Q Consensus       123 -~~-~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g-l~~~~~~~~~~LSgG~~qr~~~~~  199 (601)
                       .. ..++.+||+||++.+|+.+||+||+.|+... ..+.++.+++++++++.++ +.+..++++.+||||||||+++||
T Consensus        74 ~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~-~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAr  152 (240)
T 1ji0_A           74 PAHVINRMGIALVPEGRRIFPELTVYENLMMGAYN-RKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGR  152 (240)
T ss_dssp             CHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTT-CCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHH
T ss_pred             CHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhc-CCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHH
Confidence             22 2355699999999999999999999987422 2334456677889999995 999999999999999999998654


Q ss_pred             hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365         200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS  279 (601)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  279 (601)
                      ||                                      +++                                   |+
T Consensus       153 aL--------------------------------------~~~-----------------------------------p~  159 (240)
T 1ji0_A          153 AL--------------------------------------MSR-----------------------------------PK  159 (240)
T ss_dssp             HH--------------------------------------TTC-----------------------------------CS
T ss_pred             HH--------------------------------------HcC-----------------------------------CC
Confidence            33                                      233                                   58


Q ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      +|||||||+|||+.++..++++|+++.     .+|+|||++|||++++..+||++++|.+|+++..+++
T Consensus       160 lllLDEPts~LD~~~~~~l~~~l~~~~-----~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~  223 (240)
T 1ji0_A          160 LLMMDEPSLGLAPILVSEVFEVIQKIN-----QEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKA  223 (240)
T ss_dssp             EEEEECTTTTCCHHHHHHHHHHHHHHH-----HTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEH
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHH-----HCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence            999999999999999999999999873     2589999999999999999999999999998876643

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=1.3e-42  Score=350.26  Aligned_cols=204  Identities=24%  Similarity=0.327  Sum_probs=172.5

Q ss_pred             hhcccccccccCCCccceeecceEEeec-----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHH
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP-----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTT  125 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~  125 (601)
                      .++||++.|++      .++|+||++.+     +|||||  |||||      .++|+|+++|++|+|.++|.++... ..
T Consensus         3 ~~~~l~~~y~~------~l~~isl~i~~e~~~liG~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~~~~~-~~   67 (240)
T 2onk_A            3 LKVRAEKRLGN------FRLNVDFEMGRDYCVLLGPTGA--GKSVF------LELIAGIVKPDRGEVRLNGADITPL-PP   67 (240)
T ss_dssp             EEEEEEEEETT------EEEEEEEEECSSEEEEECCTTS--SHHHH------HHHHHTSSCCSEEEEEETTEECTTS-CT
T ss_pred             EEEEEEEEeCC------EEeeeEEEECCEEEEEECCCCC--CHHHH------HHHHhCCCCCCceEEEECCEECCcC-ch
Confidence            47899999853      49999999876     999999  56665      5799999999999999999988542 22


Q ss_pred             hcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchh
Q psy7365         126 IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNK  205 (601)
Q Consensus       126 ~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~  205 (601)
                      .++.+||+||++.+|+++||+||+.|+...++.+  ..++++.++++.+||.+..++++.+||||||||+++||||    
T Consensus        68 ~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral----  141 (240)
T 2onk_A           68 ERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERV--ERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARAL----  141 (240)
T ss_dssp             TTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHH--HHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHH----
T ss_pred             hhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCc--hHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHH----
Confidence            3568999999999999999999999876544322  2256789999999999999999999999999999865433    


Q ss_pred             hHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEec
Q psy7365         206 AWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDE  285 (601)
Q Consensus       206 ~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDE  285 (601)
                                                        +++                                   |+++||||
T Consensus       142 ----------------------------------~~~-----------------------------------p~lllLDE  152 (240)
T 2onk_A          142 ----------------------------------VIQ-----------------------------------PRLLLLDE  152 (240)
T ss_dssp             ----------------------------------TTC-----------------------------------CSSBEEES
T ss_pred             ----------------------------------HcC-----------------------------------CCEEEEeC
Confidence                                              333                                   58999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         286 PTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       286 PtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      ||+|||+.+++.++++|+++..    ..|+|||++|||++++..+||++++|.+|+++..+++
T Consensus       153 Pts~LD~~~~~~~~~~l~~l~~----~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~  211 (240)
T 2onk_A          153 PLSAVDLKTKGVLMEELRFVQR----EFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKL  211 (240)
T ss_dssp             TTSSCCHHHHHHHHHHHHHHHH----HHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred             CcccCCHHHHHHHHHHHHHHHH----hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence            9999999999999999998732    2489999999999999999999999999999876643

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=100.00  E-value=6.7e-41  Score=388.11  Aligned_cols=111  Identities=23%  Similarity=0.353  Sum_probs=103.7

Q ss_pred             HHHHHHHHHcCCCc-ccccccCcCChHHHHHHHHHHHHhCC---CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEE
Q psy7365         409 TIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGN---TPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI  484 (601)
Q Consensus       409 ~~~~~lLe~~~L~~-~~~~~~~~LSgGqkQRl~lA~AL~~~---P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVl  484 (601)
                      +++.++|+.++|.. ..++++.+|||||||||.||++|+.+   |++|||||||+|||+.+++.++++|++++++|.|||
T Consensus       708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI  787 (842)
T 2vf7_A          708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI  787 (842)
T ss_dssp             HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence            46789999999987 46899999999999999999999996   799999999999999999999999999988899999


Q ss_pred             EEccChhHHHhhCCEEEEE------eCCEEEEecCHHHHHHH
Q psy7365         485 LTSHNMEECEALCTKLTIM------VNGQFTCLGSATHLKSK  520 (601)
Q Consensus       485 lsTHdl~e~~~l~drv~iL------~~G~iv~~G~~~~L~~~  520 (601)
                      ++|||++++ .+||||++|      ++|++++.|+++++.+.
T Consensus       788 visHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~  828 (842)
T 2vf7_A          788 AVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVAQA  828 (842)
T ss_dssp             EECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHTTC
T ss_pred             EEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHHhC
Confidence            999999999 789999999      79999999999998653

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=1.5e-41  Score=347.40  Aligned_cols=209  Identities=22%  Similarity=0.298  Sum_probs=174.5

Q ss_pred             hhhcccccccccCC-CccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          50 SLFESLSENRDKLG-IDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      ..++||++.|+..+ ...++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++...
T Consensus         3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGs--GKSTL------l~~i~Gl~~p~~G~I~~~g~~~~~~   74 (266)
T 2yz2_A            3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGS--GKSTL------LQIVAGLIEPTSGDVLYDGERKKGY   74 (266)
T ss_dssp             EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTS--SHHHH------HHHHTTSSCCSEEEEEETTEECCHH
T ss_pred             EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCC--cHHHH------HHHHhCCCCCCCcEEEECCEECchH
Confidence            45899999985211 015699999999988      999999  56655      5799999999999999999988532


Q ss_pred             hHHhcccEEEEccCC-CCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC--cccCCccccCChHHHhhhhchh
Q psy7365         123 MTTIRRSLGVCPQYN-ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP--HKRTSLANTLSGGMQRKLDNVK  199 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgG~~qr~~~~~  199 (601)
                        ..++.+||+||+| .+|+.+||+||+.|+...+ .+.++.++++.++++.+||.  +..++++.+||||||||+++||
T Consensus        75 --~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAr  151 (266)
T 2yz2_A           75 --EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIAS  151 (266)
T ss_dssp             --HHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHH
T ss_pred             --HhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHH
Confidence              5567899999997 5677899999999976543 44334456788999999999  9999999999999999998654


Q ss_pred             hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365         200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS  279 (601)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  279 (601)
                      ||                                      +++                                   |+
T Consensus       152 aL--------------------------------------~~~-----------------------------------p~  158 (266)
T 2yz2_A          152 VI--------------------------------------VHE-----------------------------------PD  158 (266)
T ss_dssp             HH--------------------------------------TTC-----------------------------------CS
T ss_pred             HH--------------------------------------HcC-----------------------------------CC
Confidence            33                                      333                                   58


Q ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                      +|||||||+|||+.++..++++|+++.     .+|+|||++|||++++..+||++++|.+|+++..++
T Consensus       159 lllLDEPts~LD~~~~~~l~~~l~~l~-----~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~  221 (266)
T 2yz2_A          159 ILILDEPLVGLDREGKTDLLRIVEKWK-----TLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT  221 (266)
T ss_dssp             EEEEESTTTTCCHHHHHHHHHHHHHHH-----HTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEE
T ss_pred             EEEEcCccccCCHHHHHHHHHHHHHHH-----HcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence            999999999999999999999999873     248999999999999999999999999999887654

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=1.4e-41  Score=349.85  Aligned_cols=210  Identities=20%  Similarity=0.250  Sum_probs=173.2

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCC--
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIR--  120 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~--  120 (601)
                      +..++||++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.  
T Consensus        21 ~l~~~~l~~~y~~----~~vL~~isl~i~~Ge~~~liG~NGs--GKSTL------lk~l~Gl~~p~~G~I~~~g~~~~~~   88 (279)
T 2ihy_A           21 LIQLDQIGRMKQG----KTILKKISWQIAKGDKWILYGLNGA--GKTTL------LNILNAYEPATSGTVNLFGKMPGKV   88 (279)
T ss_dssp             EEEEEEEEEEETT----EEEEEEEEEEEETTCEEEEECCTTS--SHHHH------HHHHTTSSCCSEEEEEETTBCCC--
T ss_pred             eEEEEeEEEEECC----EEEEEeeeEEEcCCCEEEEECCCCC--cHHHH------HHHHhCCCCCCCeEEEECCEEcccc
Confidence            4669999999864    4699999999988      999999  56655      57999999999999999999885  


Q ss_pred             C-chHHhcccEEEEccCCCCC--CCCCHHHHHHHhHhh----cCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHh
Q psy7365         121 T-DMTTIRRSLGVCPQYNALF--DKLTVEEHMWFYSQL----KQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQR  193 (601)
Q Consensus       121 ~-~~~~~~~~ig~v~Q~~~~~--~~~tv~e~l~~~~~~----~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~q  193 (601)
                      . .....++.+||+||++.++  +.+||+||+.|+...    ++.+.++.++++.++++.+||.+..++++.+|||||||
T Consensus        89 ~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkq  168 (279)
T 2ihy_A           89 GYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQ  168 (279)
T ss_dssp             -CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHH
T ss_pred             cCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHH
Confidence            2 3345677899999998643  356999999886421    22333455677899999999999999999999999999


Q ss_pred             hhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhh
Q psy7365         194 KLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAM  273 (601)
Q Consensus       194 r~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  273 (601)
                      ||++||||                                      +.+                               
T Consensus       169 Rv~lAraL--------------------------------------~~~-------------------------------  179 (279)
T 2ihy_A          169 RVMIARAL--------------------------------------MGQ-------------------------------  179 (279)
T ss_dssp             HHHHHHHH--------------------------------------HTC-------------------------------
T ss_pred             HHHHHHHH--------------------------------------hCC-------------------------------
Confidence            99865433                                      233                               


Q ss_pred             ccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEE--EEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         274 SFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTV--ILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       274 ~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TV--I~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                          |++|||||||+|||+.+++.++++|+++.     .+|+||  |++|||++++..+||++++|.+|+++..+++
T Consensus       180 ----p~lLlLDEPts~LD~~~~~~l~~~l~~l~-----~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  247 (279)
T 2ihy_A          180 ----PQVLILDEPAAGLDFIARESLLSILDSLS-----DSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAV  247 (279)
T ss_dssp             ----CSEEEEESTTTTCCHHHHHHHHHHHHHHH-----HHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEH
T ss_pred             ----CCEEEEeCCccccCHHHHHHHHHHHHHHH-----HCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence                58999999999999999999999999873     238899  9999999999999999999999999877654

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=1.2e-40  Score=337.58  Aligned_cols=209  Identities=18%  Similarity=0.228  Sum_probs=169.4

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCC--CCCCeeEEEEccccCCC
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGM--LPVSSGTAKIYDHDIRT  121 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl--~~~~~G~v~~~g~~~~~  121 (601)
                      ..+++|++.|++    .++++|+||++.+      +|||||  |||||      .++|+|+  ++|++|+|.++|.++..
T Consensus         4 l~~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~l~G~nGs--GKSTL------lk~l~Gl~~~~p~~G~I~~~g~~~~~   71 (250)
T 2d2e_A            4 LEIRDLWASIDG----ETILKGVNLVVPKGEVHALMGPNGA--GKSTL------GKILAGDPEYTVERGEILLDGENILE   71 (250)
T ss_dssp             EEEEEEEEEETT----EEEEEEEEEEEETTCEEEEECSTTS--SHHHH------HHHHHTCTTCEEEEEEEEETTEECTT
T ss_pred             EEEEeEEEEECC----EEEEeceEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCCceEEEECCEECCC
Confidence            558999999864    4699999999988      999999  56655      5799999  89999999999999854


Q ss_pred             c-hH-HhcccEEEEccCCCCCCCCCHHHHHHHhHhh-cC--CChHHHHHHHHHHHHHcCC-CcccCCcccc-CChHHHhh
Q psy7365         122 D-MT-TIRRSLGVCPQYNALFDKLTVEEHMWFYSQL-KQ--VPKDLAQLEISNMIGDLGI-PHKRTSLANT-LSGGMQRK  194 (601)
Q Consensus       122 ~-~~-~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~-~~--~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~-LSgG~~qr  194 (601)
                      . .. ..+..++|+||+|.+|+.+||.||+.|+... .+  .+..+..+++.++++.+|+ .+..++++++ ||||||||
T Consensus        72 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQr  151 (250)
T 2d2e_A           72 LSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKR  151 (250)
T ss_dssp             SCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHH
T ss_pred             CCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHH
Confidence            2 22 2345699999999999999999999987542 23  2344556778899999999 4788999999 99999999


Q ss_pred             hhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhc
Q psy7365         195 LDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMS  274 (601)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  274 (601)
                      +++||||                                      +++                                
T Consensus       152 v~iAraL--------------------------------------~~~--------------------------------  161 (250)
T 2d2e_A          152 NEILQLL--------------------------------------VLE--------------------------------  161 (250)
T ss_dssp             HHHHHHH--------------------------------------HHC--------------------------------
T ss_pred             HHHHHHH--------------------------------------HcC--------------------------------
Confidence            9865433                                      333                                


Q ss_pred             cCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhc-CCEEEEecCCccccccCc
Q psy7365         275 FVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLL-GDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       275 ~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l-~Drv~vL~~GkIv~~G~~  348 (601)
                         |+++||||||+|||+.++..++++|+++     +.+|+|||++|||++++..+ ||++++|.+|+++..+++
T Consensus       162 ---p~lllLDEPts~LD~~~~~~l~~~l~~l-----~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~  228 (250)
T 2d2e_A          162 ---PTYAVLDETDSGLDIDALKVVARGVNAM-----RGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGP  228 (250)
T ss_dssp             ---CSEEEEECGGGTTCHHHHHHHHHHHHHH-----CSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESH
T ss_pred             ---CCEEEEeCCCcCCCHHHHHHHHHHHHHH-----HhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCH
Confidence               5899999999999999999999999987     23589999999999999988 599999999999877654

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=7.8e-40  Score=334.80  Aligned_cols=210  Identities=21%  Similarity=0.261  Sum_probs=172.7

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCC--CCCCeeEEEEccccCC
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGM--LPVSSGTAKIYDHDIR  120 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl--~~~~~G~v~~~g~~~~  120 (601)
                      +..+++|++.|++    ..+++|+||++.+      +|||||  |||||      .++|+|+  ++|++|+|.++|.++.
T Consensus        20 ~l~~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~l~G~NGs--GKSTL------lk~l~Gl~~~~p~~G~I~~~g~~i~   87 (267)
T 2zu0_C           20 MLSIKDLHVSVED----KAILRGLSLDVHPGEVHAIMGPNGS--GKSTL------SATLAGREDYEVTGGTVEFKGKDLL   87 (267)
T ss_dssp             CEEEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTS--SHHHH------HHHHHTCTTCEEEEEEEEETTEEGG
T ss_pred             eEEEEeEEEEECC----EEEEEeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCCCeEEEECCEECC
Confidence            4669999999853    4699999999988      999999  56655      5799999  4799999999999875


Q ss_pred             Cc-hHH-hcccEEEEccCCCCCCCCCHHHHHHHhHhh----cC---CChHHHHHHHHHHHHHcCCC-cccCCccc-cCCh
Q psy7365         121 TD-MTT-IRRSLGVCPQYNALFDKLTVEEHMWFYSQL----KQ---VPKDLAQLEISNMIGDLGIP-HKRTSLAN-TLSG  189 (601)
Q Consensus       121 ~~-~~~-~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~~~~~~l~~~gl~-~~~~~~~~-~LSg  189 (601)
                      .. ... .+..+||+||++.+|+.+||.||+.+....    ++   .+.++.++++.++++.+||. ...++++. +|||
T Consensus        88 ~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSg  167 (267)
T 2zu0_C           88 ALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG  167 (267)
T ss_dssp             GSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCH
T ss_pred             cCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCH
Confidence            32 222 244699999999999999999999876421    22   23445567889999999997 57889997 5999


Q ss_pred             HHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHH
Q psy7365         190 GMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTV  269 (601)
Q Consensus       190 G~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~  269 (601)
                      |||||++|||||                                      +++                           
T Consensus       168 Gq~QRv~iAraL--------------------------------------~~~---------------------------  182 (267)
T 2zu0_C          168 GEKKRNDILQMA--------------------------------------VLE---------------------------  182 (267)
T ss_dssp             HHHHHHHHHHHH--------------------------------------HHC---------------------------
T ss_pred             HHHHHHHHHHHH--------------------------------------HhC---------------------------
Confidence            999999865433                                      233                           


Q ss_pred             HHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhc-CCEEEEecCCccccccCc
Q psy7365         270 LFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLL-GDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       270 ~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l-~Drv~vL~~GkIv~~G~~  348 (601)
                              |++|||||||+|||+.++..++++|+++     +.+|+|||++|||++++..+ |||+++|.+|+++..+++
T Consensus       183 --------p~lLlLDEPts~LD~~~~~~l~~~l~~l-----~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~  249 (267)
T 2zu0_C          183 --------PELCILDESDSGLDIDALKVVADGVNSL-----RDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF  249 (267)
T ss_dssp             --------CSEEEEESTTTTCCHHHHHHHHHHHHTT-----CCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECT
T ss_pred             --------CCEEEEeCCCCCCCHHHHHHHHHHHHHH-----HhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCH
Confidence                    5899999999999999999999999886     23589999999999999886 999999999999877654

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=1.2e-39  Score=330.98  Aligned_cols=198  Identities=20%  Similarity=0.287  Sum_probs=167.4

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM  123 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~  123 (601)
                      ..+++|++.|+.   +..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.          
T Consensus         5 l~i~~l~~~y~~---~~~vl~~isl~i~~Ge~~~l~G~nGs--GKSTL------l~~l~Gl~~p~~G~I~----------   63 (253)
T 2nq2_C            5 LSVENLGFYYQA---ENFLFQQLNFDLNKGDILAVLGQNGC--GKSTL------LDLLLGIHRPIQGKIE----------   63 (253)
T ss_dssp             EEEEEEEEEETT---TTEEEEEEEEEEETTCEEEEECCSSS--SHHHH------HHHHTTSSCCSEEEEE----------
T ss_pred             EEEeeEEEEeCC---CCeEEEEEEEEECCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCcEEE----------
Confidence            568999999861   24699999999988      999999  56665      6799999999999998          


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhc-C---CChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK-Q---VPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK  199 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~-~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~  199 (601)
                        .++.+||+||++.+|+.+||+||+.|+.... +   .+....++++.++++.+||.+..++++.+||||||||+++||
T Consensus        64 --~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAr  141 (253)
T 2nq2_C           64 --VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIAR  141 (253)
T ss_dssp             --ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred             --EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHH
Confidence              2567999999999999999999999875432 2   233445677899999999999999999999999999998654


Q ss_pred             hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365         200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS  279 (601)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  279 (601)
                      ||                                      +++                                   |+
T Consensus       142 aL--------------------------------------~~~-----------------------------------p~  148 (253)
T 2nq2_C          142 AI--------------------------------------ASE-----------------------------------CK  148 (253)
T ss_dssp             HH--------------------------------------HTT-----------------------------------CS
T ss_pred             HH--------------------------------------HcC-----------------------------------CC
Confidence            33                                      233                                   58


Q ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      +|||||||+|||+.++..++++|+++.    +..|+|||++|||++++..+||++++|.+|+ +..+.+
T Consensus       149 lllLDEPts~LD~~~~~~l~~~l~~l~----~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~  212 (253)
T 2nq2_C          149 LILLDEPTSALDLANQDIVLSLLIDLA----QSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGET  212 (253)
T ss_dssp             EEEESSSSTTSCHHHHHHHHHHHHHHH----HTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEH
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCH
Confidence            999999999999999999999999873    2238999999999999999999999999999 766643

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=1.7e-40  Score=329.26  Aligned_cols=191  Identities=18%  Similarity=0.212  Sum_probs=162.9

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM  123 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~  123 (601)
                      ..+++|++.|++     .+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.   
T Consensus        11 l~~~~ls~~y~~-----~il~~vsl~i~~Ge~~~iiG~NGs--GKSTL------lk~l~Gl~~p~~G~I~~~g~~~~---   74 (214)
T 1sgw_A           11 LEIRDLSVGYDK-----PVLERITMTIEKGNVVNFHGPNGI--GKTTL------LKTISTYLKPLKGEIIYNGVPIT---   74 (214)
T ss_dssp             EEEEEEEEESSS-----EEEEEEEEEEETTCCEEEECCTTS--SHHHH------HHHHTTSSCCSEEEEEETTEEGG---
T ss_pred             EEEEEEEEEeCC-----eEEeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCeEEEECCEEhh---
Confidence            348999999853     599999999988      999999  56655      57999999999999999999874   


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcc
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFN  203 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~  203 (601)
                       ..++.+||+||++.+|+.+||.||+.|+...++. ... ++++.++++.+|+.+. ++++.+||||||||+++|||+  
T Consensus        75 -~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL--  148 (214)
T 1sgw_A           75 -KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTL--  148 (214)
T ss_dssp             -GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHT--
T ss_pred             -hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHH--
Confidence             2467899999999999999999999998765553 222 4678899999999988 999999999999999864433  


Q ss_pred             hhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEE
Q psy7365         204 NKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVIL  283 (601)
Q Consensus       204 ~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liL  283 (601)
                                                          +.+                                   |+++||
T Consensus       149 ------------------------------------~~~-----------------------------------p~lllL  157 (214)
T 1sgw_A          149 ------------------------------------LVN-----------------------------------AEIYVL  157 (214)
T ss_dssp             ------------------------------------TSC-----------------------------------CSEEEE
T ss_pred             ------------------------------------HhC-----------------------------------CCEEEE
Confidence                                                233                                   589999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEec
Q psy7365         284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA  338 (601)
Q Consensus       284 DEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~  338 (601)
                      ||||+|||+.++..++++|+++.     .+|+|||++||+++++..+||++++++
T Consensus       158 DEPts~LD~~~~~~l~~~l~~~~-----~~g~tiiivtHd~~~~~~~~d~v~~~~  207 (214)
T 1sgw_A          158 DDPVVAIDEDSKHKVLKSILEIL-----KEKGIVIISSREELSYCDVNENLHKYS  207 (214)
T ss_dssp             ESTTTTSCTTTHHHHHHHHHHHH-----HHHSEEEEEESSCCTTSSEEEEGGGGB
T ss_pred             ECCCcCCCHHHHHHHHHHHHHHH-----hCCCEEEEEeCCHHHHHHhCCEEEEeC
Confidence            99999999999999999999873     247899999999999999999987654

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=100.00  E-value=9.1e-40  Score=331.10  Aligned_cols=206  Identities=17%  Similarity=0.243  Sum_probs=169.8

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      ..+++|++.        .+++|+||++.+      +|||||  |||||      .++|+|+++|+ |+|.++|.++.. .
T Consensus         5 l~~~~l~~~--------~vl~~vsl~i~~Ge~~~liG~NGs--GKSTL------lk~l~Gl~~p~-G~i~~~g~~~~~~~   67 (249)
T 2qi9_C            5 MQLQDVAES--------TRLGPLSGEVRAGEILHLVGPNGA--GKSTL------LARMAGMTSGK-GSIQFAGQPLEAWS   67 (249)
T ss_dssp             EEEEEEEET--------TTEEEEEEEEETTCEEEEECCTTS--SHHHH------HHHHTTSSCCE-EEEEETTEEGGGSC
T ss_pred             EEEEceEEE--------EEEeeeEEEEcCCCEEEEECCCCC--cHHHH------HHHHhCCCCCC-eEEEECCEECCcCC
Confidence            458899886        489999999988      999999  56665      57999999999 999999998743 2


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhc
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWF  202 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~  202 (601)
                      ....++.+||+||++.+|+.+||+||+.|+.. .+.+    ++++.++++.+|+.+..++++.+||||||||+++||||+
T Consensus        68 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~  142 (249)
T 2qi9_C           68 ATKLALHRAYLSQQQTPPFATPVWHYLTLHQH-DKTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVL  142 (249)
T ss_dssp             HHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS-STTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred             HHHHhceEEEECCCCccCCCCcHHHHHHHhhc-cCCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence            34556789999999999999999999988632 1222    456889999999999999999999999999998766544


Q ss_pred             chhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEE
Q psy7365         203 NNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVI  282 (601)
Q Consensus       203 ~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~li  282 (601)
                      .+|.-                                   +                               ..++.+||
T Consensus       143 ~~p~~-----------------------------------~-------------------------------~~~~~lll  156 (249)
T 2qi9_C          143 QITPQ-----------------------------------A-------------------------------NPAGQLLL  156 (249)
T ss_dssp             HHCTT-----------------------------------T-------------------------------CTTCCEEE
T ss_pred             cCCCc-----------------------------------C-------------------------------CCCCeEEE
Confidence            43210                                   0                               00122999


Q ss_pred             EecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       283 LDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                      |||||+|||+.++..++++|+++.     .+|+|||++|||++++..+||++++|.+|+++..+++
T Consensus       157 LDEPts~LD~~~~~~l~~~l~~l~-----~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  217 (249)
T 2qi9_C          157 LDEPMNSLDVAQQSALDKILSALS-----QQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRR  217 (249)
T ss_dssp             ESSTTTTCCHHHHHHHHHHHHHHH-----HTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEH
T ss_pred             EECCcccCCHHHHHHHHHHHHHHH-----hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence            999999999999999999999873     2489999999999999999999999999999876654

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=100.00  E-value=1e-39  Score=334.60  Aligned_cols=211  Identities=19%  Similarity=0.273  Sum_probs=169.5

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-  121 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-  121 (601)
                      ++.+++|++.|++. ...++|+|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. 
T Consensus        16 ~l~~~~l~~~y~~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGs--GKSTL------lk~l~Gl~~p~~G~I~~~g~~i~~~   86 (271)
T 2ixe_A           16 LVKFQDVSFAYPNH-PNVQVLQGLTFTLYPGKVTALVGPNGS--GKSTV------AALLQNLYQPTGGKVLLDGEPLVQY   86 (271)
T ss_dssp             CEEEEEEEECCTTC-TTSCCEEEEEEEECTTCEEEEECSTTS--SHHHH------HHHHTTSSCCSEEEEEETTEEGGGB
T ss_pred             eEEEEEEEEEeCCC-CCceeeEeeEEEECCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCCEEEECCEEcccC
Confidence            45699999998641 125699999999988      999999  56655      579999999999999999998853 


Q ss_pred             chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHH-----HHHHHHHHHHc--CCCcccCCccccCChHHHhh
Q psy7365         122 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLA-----QLEISNMIGDL--GIPHKRTSLANTLSGGMQRK  194 (601)
Q Consensus       122 ~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qr  194 (601)
                      ....+++.||||||++.+|+ .||+||+.|+..... ..++.     ...+.++++.+  |+....++++.+||||||||
T Consensus        87 ~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QR  164 (271)
T 2ixe_A           87 DHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQA  164 (271)
T ss_dssp             CHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSCC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHH
T ss_pred             CHHHHhccEEEEecCCcccc-ccHHHHHhhhcccCC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHH
Confidence            23345678999999999887 599999998653221 10211     22356778888  78888999999999999999


Q ss_pred             hhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhc
Q psy7365         195 LDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMS  274 (601)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  274 (601)
                      ++|||||                                      +++                                
T Consensus       165 v~lAraL--------------------------------------~~~--------------------------------  174 (271)
T 2ixe_A          165 VALARAL--------------------------------------IRK--------------------------------  174 (271)
T ss_dssp             HHHHHHH--------------------------------------TTC--------------------------------
T ss_pred             HHHHHHH--------------------------------------hcC--------------------------------
Confidence            9865433                                      233                                


Q ss_pred             cCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         275 FVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       275 ~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                         |++|||||||+|||+.++..++++|+++.    +..|+|||++|||++++.. ||++++|.+|+++..+++
T Consensus       175 ---p~lllLDEPts~LD~~~~~~i~~~l~~~~----~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~g~~  240 (271)
T 2ixe_A          175 ---PRLLILDNATSALDAGNQLRVQRLLYESP----EWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQGTH  240 (271)
T ss_dssp             ---CSEEEEESTTTTCCHHHHHHHHHHHHHCT----TTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEEECH
T ss_pred             ---CCEEEEECCccCCCHHHHHHHHHHHHHHH----hhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCH
Confidence               58999999999999999999999999872    2348999999999999875 999999999999876654

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=100.00  E-value=2.8e-39  Score=327.06  Aligned_cols=201  Identities=23%  Similarity=0.326  Sum_probs=161.3

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-ch
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DM  123 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~  123 (601)
                      .+++|++.|.  +....+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. ..
T Consensus         9 ~~~~l~~~y~--~~~~~vl~~vsl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~p~~G~I~i~g~~~~~~~~   78 (247)
T 2ff7_A            9 TFRNIRFRYK--PDSPVILDNINLSIKQGEVIGIVGRSGS--GKSTL------TKLIQRFYIPENGQVLIDGHDLALADP   78 (247)
T ss_dssp             EEEEEEEESS--TTSCEEEEEEEEEEETTCEEEEECSTTS--SHHHH------HHHHTTSSCCSEEEEEETTEETTTSCH
T ss_pred             eEEEEEEEeC--CCCcceeeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCcEEEECCEEhhhCCH
Confidence            4899999983  1235699999999988      999999  56655      579999999999999999999864 33


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCccccCChHHH
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHK-----------RTSLANTLSGGMQ  192 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~  192 (601)
                      ..+++.+|||||++.+|+ .||+||+.|+..  ..+    .+++.++++.+|+.+.           .++++.+||||||
T Consensus        79 ~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~  151 (247)
T 2ff7_A           79 NWLRRQVGVVLQDNVLLN-RSIIDNISLANP--GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQR  151 (247)
T ss_dssp             HHHHHHEEEECSSCCCTT-SBHHHHHTTTCT--TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHH
T ss_pred             HHHHhcEEEEeCCCcccc-ccHHHHHhccCC--CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHH
Confidence            456678999999999886 599999988632  222    2345566666666543           4456789999999


Q ss_pred             hhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHh
Q psy7365         193 RKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFA  272 (601)
Q Consensus       193 qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  272 (601)
                      ||+++||||                                      +++                              
T Consensus       152 qRv~iAraL--------------------------------------~~~------------------------------  163 (247)
T 2ff7_A          152 QRIAIARAL--------------------------------------VNN------------------------------  163 (247)
T ss_dssp             HHHHHHHHH--------------------------------------TTC------------------------------
T ss_pred             HHHHHHHHH--------------------------------------hcC------------------------------
Confidence            999865433                                      233                              


Q ss_pred             hccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         273 MSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       273 ~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                           |+++||||||+|||+.++..++++|+++.      +|+|||++||+++++. .||++++|.+|+++..+++
T Consensus       164 -----p~lllLDEPts~LD~~~~~~i~~~l~~~~------~g~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~  227 (247)
T 2ff7_A          164 -----PKILIFDEATSALDYESEHVIMRNMHKIC------KGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKH  227 (247)
T ss_dssp             -----CSEEEECCCCSCCCHHHHHHHHHHHHHHH------TTSEEEEECSSGGGGT-TSSEEEEEETTEEEEEECH
T ss_pred             -----CCEEEEeCCcccCCHHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCH
Confidence                 58999999999999999999999999872      4899999999999886 4999999999999876654

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=100.00  E-value=5.5e-39  Score=334.39  Aligned_cols=206  Identities=26%  Similarity=0.395  Sum_probs=164.0

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++||++.|+.   ..++|+|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. +
T Consensus        54 i~~~~vs~~y~~---~~~vL~~isl~i~~Ge~vaivG~sGs--GKSTL------l~ll~gl~~p~~G~I~i~G~~i~~~~  122 (306)
T 3nh6_A           54 IEFENVHFSYAD---GRETLQDVSFTVMPGQTLALVGPSGA--GKSTI------LRLLFRFYDISSGCIRIDGQDISQVT  122 (306)
T ss_dssp             EEEEEEEEESST---TCEEEEEEEEEECTTCEEEEESSSCH--HHHHH------HHHHTTSSCCSEEEEEETTEETTSBC
T ss_pred             EEEEEEEEEcCC---CCceeeeeeEEEcCCCEEEEECCCCc--hHHHH------HHHHHcCCCCCCcEEEECCEEcccCC
Confidence            559999999852   35699999999988      999999  56554      579999999999999999999965 3


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHH-----HHHHHHHc--CCCcccCCccccCChHHHhhh
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIGDL--GIPHKRTSLANTLSGGMQRKL  195 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LSgG~~qr~  195 (601)
                      ...+|+.||||||+|.+|+ .||+||+.|+....+  .++..+.     +.+.++.+  |+....++...+||||||||+
T Consensus       123 ~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~~~--~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRv  199 (306)
T 3nh6_A          123 QASLRSHIGVVPQDTVLFN-DTIADNIRYGRVTAG--NDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRV  199 (306)
T ss_dssp             HHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTTCC--HHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHH
T ss_pred             HHHHhcceEEEecCCccCc-ccHHHHHHhhcccCC--HHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHH
Confidence            4567889999999999884 699999998754322  2221111     11233333  445556677889999999999


Q ss_pred             hchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhcc
Q psy7365         196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSF  275 (601)
Q Consensus       196 ~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  275 (601)
                      +|||||+                                      .+                                 
T Consensus       200 aiARAL~--------------------------------------~~---------------------------------  208 (306)
T 3nh6_A          200 AIARTIL--------------------------------------KA---------------------------------  208 (306)
T ss_dssp             HHHHHHH--------------------------------------HC---------------------------------
T ss_pred             HHHHHHH--------------------------------------hC---------------------------------
Confidence            8665433                                      33                                 


Q ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       276 ~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                        |++|||||||++||+.+...+++.|.++.      .++|+|++||+++.+.. ||+|++|++|+++..|+..
T Consensus       209 --p~iLlLDEPts~LD~~~~~~i~~~l~~l~------~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~  273 (306)
T 3nh6_A          209 --PGIILLDEATSALDTSNERAIQASLAKVC------ANRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGRHE  273 (306)
T ss_dssp             --CSEEEEECCSSCCCHHHHHHHHHHHHHHH------TTSEEEEECCSHHHHHT-CSEEEEEETTEEEEEECHH
T ss_pred             --CCEEEEECCcccCCHHHHHHHHHHHHHHc------CCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHH
Confidence              58999999999999999999999999873      47899999999999986 9999999999999888654

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=100.00  E-value=4.5e-39  Score=324.64  Aligned_cols=201  Identities=21%  Similarity=0.299  Sum_probs=163.3

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-ch
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DM  123 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~  123 (601)
                      .++||++.|+   +...+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. +.
T Consensus         3 ~~~~l~~~y~---~~~~vl~~vsl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g~~~~~~~~   71 (243)
T 1mv5_A            3 SARHVDFAYD---DSEQILRDISFEAQPNSIIAFAGPSGG--GKSTI------FSLLERFYQPTAGEITIDGQPIDNISL   71 (243)
T ss_dssp             EEEEEEECSS---SSSCSEEEEEEEECTTEEEEEECCTTS--SHHHH------HHHHTTSSCCSBSCEEETTEESTTTSC
T ss_pred             EEEEEEEEeC---CCCceEEEeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCcEEEECCEEhhhCCH
Confidence            4789999983   234699999999988      999999  56655      579999999999999999998854 22


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCC-----------ccccCChHHH
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTS-----------LANTLSGGMQ  192 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgG~~  192 (601)
                      ...++.+||+||++.+|+ .||+||+.|+.. .+.+    ++++.++++.+|+.+..++           ++.+||||||
T Consensus        72 ~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~  145 (243)
T 1mv5_A           72 ENWRSQIGFVSQDSAIMA-GTIRENLTYGLE-GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQR  145 (243)
T ss_dssp             SCCTTTCCEECCSSCCCC-EEHHHHTTSCTT-SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHH
T ss_pred             HHHHhhEEEEcCCCcccc-ccHHHHHhhhcc-CCCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHH
Confidence            345678999999999887 599999987632 1222    2356778899988776544           4679999999


Q ss_pred             hhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHh
Q psy7365         193 RKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFA  272 (601)
Q Consensus       193 qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  272 (601)
                      ||+++||||                                      +++                              
T Consensus       146 qrv~lAral--------------------------------------~~~------------------------------  157 (243)
T 1mv5_A          146 QRLAIARAF--------------------------------------LRN------------------------------  157 (243)
T ss_dssp             HHHHHHHHH--------------------------------------HHC------------------------------
T ss_pred             HHHHHHHHH--------------------------------------hcC------------------------------
Confidence            999865443                                      233                              


Q ss_pred             hccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         273 MSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       273 ~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                           |+++||||||+|||+.++..+++.|+++     + +|+|||++||+++++. .||++++|.+|+++..+++
T Consensus       158 -----p~lllLDEPts~LD~~~~~~i~~~l~~~-----~-~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~  221 (243)
T 1mv5_A          158 -----PKILMLDEATASLDSESESMVQKALDSL-----M-KGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKH  221 (243)
T ss_dssp             -----CSEEEEECCSCSSCSSSCCHHHHHHHHH-----H-TTSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCH
T ss_pred             -----CCEEEEECCcccCCHHHHHHHHHHHHHh-----c-CCCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCH
Confidence                 5899999999999999999999999987     2 4899999999999886 5999999999999876654

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=4e-38  Score=321.46  Aligned_cols=201  Identities=22%  Similarity=0.284  Sum_probs=166.8

Q ss_pred             hhcccccccccCCCccceeecceEEeec-----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHH
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP-----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTT  125 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~  125 (601)
                      .+++|++.|++......+++|+||++.-     +|||||  |||||      .++|+|++ |++|+|.++|.++... ..
T Consensus         3 ~~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGs--GKSTL------lk~l~Gl~-p~~G~I~~~g~~~~~~-~~   72 (263)
T 2pjz_A            3 QLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGS--GKTTL------LRAISGLL-PYSGNIFINGMEVRKI-RN   72 (263)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTS--SHHHH------HHHHTTSS-CCEEEEEETTEEGGGC-SC
T ss_pred             EEEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCC--CHHHH------HHHHhCCC-CCCcEEEECCEECcch-HH
Confidence            4789999986421225699999999843     999999  56655      57999999 9999999999987533 22


Q ss_pred             hcccEE-EEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC-cccCCccccCChHHHhhhhchhhhcc
Q psy7365         126 IRRSLG-VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP-HKRTSLANTLSGGMQRKLDNVKVWFN  203 (601)
Q Consensus       126 ~~~~ig-~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qr~~~~~~~~~  203 (601)
                       ++.+| |+||++.+  .+||.||+.|+...+...    ++++.++++.+|+. +..++++.+||||||||+++||||  
T Consensus        73 -~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL--  143 (263)
T 2pjz_A           73 -YIRYSTNLPEAYEI--GVTVNDIVYLYEELKGLD----RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLAL--  143 (263)
T ss_dssp             -CTTEEECCGGGSCT--TSBHHHHHHHHHHHTCCC----HHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHH--
T ss_pred             -hhheEEEeCCCCcc--CCcHHHHHHHhhhhcchH----HHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH--
Confidence             66899 99999987  899999999976544222    35678899999999 999999999999999999865432  


Q ss_pred             hhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEE
Q psy7365         204 NKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVIL  283 (601)
Q Consensus       204 ~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liL  283 (601)
                                                          +++                                   |+++||
T Consensus       144 ------------------------------------~~~-----------------------------------p~lllL  152 (263)
T 2pjz_A          144 ------------------------------------ASQ-----------------------------------PEIVGL  152 (263)
T ss_dssp             ------------------------------------HTC-----------------------------------CSEEEE
T ss_pred             ------------------------------------HhC-----------------------------------CCEEEE
Confidence                                                333                                   589999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCC-EEEEecCCccccccCcc
Q psy7365         284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGD-RIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       284 DEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~D-rv~vL~~GkIv~~G~~~  349 (601)
                      ||||+|||+.++..+++.|+++     +  . |||++|||++++..+|| ++++|.+|+++..+++.
T Consensus       153 DEPts~LD~~~~~~l~~~L~~~-----~--~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~  211 (263)
T 2pjz_A          153 DEPFENVDAARRHVISRYIKEY-----G--K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVS  211 (263)
T ss_dssp             ECTTTTCCHHHHHHHHHHHHHS-----C--S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHH
T ss_pred             ECCccccCHHHHHHHHHHHHHh-----c--C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHH
Confidence            9999999999999999999886     1  2 99999999999999999 99999999998777543

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=100.00  E-value=1.4e-37  Score=317.01  Aligned_cols=202  Identities=19%  Similarity=0.301  Sum_probs=161.4

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.+++|++.|++.. ..++++|+||++.+      +|||||  |||||      .++|+|+++| +|+|.++|.++.. .
T Consensus        18 l~i~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~~-~G~I~i~g~~i~~~~   87 (260)
T 2ghi_A           18 IEFSDVNFSYPKQT-NHRTLKSINFFIPSGTTCALVGHTGS--GKSTI------AKLLYRFYDA-EGDIKIGGKNVNKYN   87 (260)
T ss_dssp             EEEEEEEECCTTCC-SSCSEEEEEEEECTTCEEEEECSTTS--SHHHH------HHHHTTSSCC-EEEEEETTEEGGGBC
T ss_pred             EEEEEEEEEeCCCC-cCceeEeeEEEECCCCEEEEECCCCC--CHHHH------HHHHhccCCC-CeEEEECCEEhhhcC
Confidence            55899999986421 24699999999988      999999  56655      5799999997 8999999998853 2


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCccccCChHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHK-----------RTSLANTLSGGM  191 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~  191 (601)
                      ...+++.+||+||+|.+|+ .||+||+.|+..  ...    .+++.++++.+++.+.           .++++.+|||||
T Consensus        88 ~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGq  160 (260)
T 2ghi_A           88 RNSIRSIIGIVPQDTILFN-ETIKYNILYGKL--DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGE  160 (260)
T ss_dssp             HHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT--TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHH
T ss_pred             HHHHhccEEEEcCCCcccc-cCHHHHHhccCC--CCC----HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHH
Confidence            3456778999999999886 699999988532  122    2345566777776432           346789999999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||+++|||+                                      +++                             
T Consensus       161 kqRv~lAraL--------------------------------------~~~-----------------------------  173 (260)
T 2ghi_A          161 RQRIAIARCL--------------------------------------LKD-----------------------------  173 (260)
T ss_dssp             HHHHHHHHHH--------------------------------------HHC-----------------------------
T ss_pred             HHHHHHHHHH--------------------------------------HcC-----------------------------
Confidence            9999865443                                      233                             


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                            |++|||||||+|||+.++..+++.|+++     + +|+|||++||+++++. .||++++|.+|+++..+++
T Consensus       174 ------p~lllLDEPts~LD~~~~~~i~~~l~~l-----~-~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g~~  237 (260)
T 2ghi_A          174 ------PKIVIFDEATSSLDSKTEYLFQKAVEDL-----R-KNRTLIIIAHRLSTIS-SAESIILLNKGKIVEKGTH  237 (260)
T ss_dssp             ------CSEEEEECCCCTTCHHHHHHHHHHHHHH-----T-TTSEEEEECSSGGGST-TCSEEEEEETTEEEEEECH
T ss_pred             ------CCEEEEECccccCCHHHHHHHHHHHHHh-----c-CCCEEEEEcCCHHHHH-hCCEEEEEECCEEEEECCH
Confidence                  5899999999999999999999999987     2 3799999999999886 5999999999999876654

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.6e-38  Score=336.69  Aligned_cols=202  Identities=22%  Similarity=0.304  Sum_probs=167.9

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++||+|.|+.  ++..+|+|+||++.+      +|||||  |||||      .++|+|+++ ++|+|.++|+++.. +
T Consensus        20 i~~~~l~~~y~~--~~~~~L~~vsl~i~~Ge~~~llGpsGs--GKSTL------Lr~iaGl~~-~~G~I~i~G~~i~~~~   88 (390)
T 3gd7_A           20 MTVKDLTAKYTE--GGNAILENISFSISPGQRVGLLGRTGS--GKSTL------LSAFLRLLN-TEGEIQIDGVSWDSIT   88 (390)
T ss_dssp             EEEEEEEEESSS--SSCCSEEEEEEEECTTCEEEEEESTTS--SHHHH------HHHHHTCSE-EEEEEEESSCBTTSSC
T ss_pred             EEEEEEEEEecC--CCeEEeeceeEEEcCCCEEEEECCCCC--hHHHH------HHHHhCCCC-CCeEEEECCEECCcCC
Confidence            459999999842  345699999999988      999999  56654      579999998 99999999999865 3


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCcccc-----------CChHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANT-----------LSGGM  191 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------LSgG~  191 (601)
                      ....++.+|||||++.+|+ +||+||+.++.   ...    ++++.++++.+||.+..++++.+           |||||
T Consensus        89 ~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~---~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGq  160 (390)
T 3gd7_A           89 LEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA---AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGH  160 (390)
T ss_dssp             HHHHHHTEEEESCCCCCCS-EEHHHHHCTTC---CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHH
T ss_pred             hHHHhCCEEEEcCCcccCc-cCHHHHhhhcc---ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHH
Confidence            4456788999999999997 69999997432   122    35678899999999999999998           99999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      ||||+|||||                                      +.+                             
T Consensus       161 rQRvalARAL--------------------------------------~~~-----------------------------  173 (390)
T 3gd7_A          161 KQLMCLARSV--------------------------------------LSK-----------------------------  173 (390)
T ss_dssp             HHHHHHHHHH--------------------------------------HTT-----------------------------
T ss_pred             HHHHHHHHHH--------------------------------------hcC-----------------------------
Confidence            9999865543                                      233                             


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                            |++|||||||||||+..+..+++.|+++      ..|+|+|++|||++.+ ..||||++|.+|+++..|++..
T Consensus       174 ------P~lLLLDEPts~LD~~~~~~l~~~l~~~------~~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~e  239 (390)
T 3gd7_A          174 ------AKILLLDEPSAHLDPVTYQIIRRTLKQA------FADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILE  239 (390)
T ss_dssp             ------CCEEEEESHHHHSCHHHHHHHHHHHHTT------TTTSCEEEECSSSGGG-TTCSEEEEEETTEEEEESSHHH
T ss_pred             ------CCEEEEeCCccCCCHHHHHHHHHHHHHH------hCCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEECCHHH
Confidence                  5899999999999999999999999875      2479999999998654 5699999999999998887643

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=100.00  E-value=1.8e-36  Score=303.14  Aligned_cols=189  Identities=22%  Similarity=0.337  Sum_probs=148.1

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM  123 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~  123 (601)
                      ..+++|++.|++  ++.++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|       
T Consensus         7 l~~~~l~~~y~~--~~~~il~~vsl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~g-------   69 (229)
T 2pze_A            7 VVMENVTAFWEE--GGTPVLKDINFKIERGQLLAVAGSTGA--GKTSL------LMMIMGELEPSEGKIKHSG-------   69 (229)
T ss_dssp             EEEEEEEECSST--TSCCSEEEEEEEEETTCEEEEECCTTS--SHHHH------HHHHTTSSCCSEEEEEECS-------
T ss_pred             EEEEEEEEEeCC--CCceeeeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCcCCccEEEECC-------
Confidence            458999999853  235699999999988      999999  56655      5799999999999999998       


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCccccCChHHH
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHK-----------RTSLANTLSGGMQ  192 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~  192 (601)
                           .+||+||+|.+|+. ||+||+.|+..   ...    .+..++++.+++.+.           .++++.+||||||
T Consensus        70 -----~i~~v~q~~~~~~~-tv~enl~~~~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqk  136 (229)
T 2pze_A           70 -----RISFCSQFSWIMPG-TIKENIIFGVS---YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQR  136 (229)
T ss_dssp             -----CEEEECSSCCCCSB-CHHHHHHTTSC---CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHH
T ss_pred             -----EEEEEecCCcccCC-CHHHHhhccCC---cCh----HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHH
Confidence                 38999999998875 99999988532   111    122334444444322           3445689999999


Q ss_pred             hhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHh
Q psy7365         193 RKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFA  272 (601)
Q Consensus       193 qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  272 (601)
                      ||+++||||                                      +++                              
T Consensus       137 qrv~lAral--------------------------------------~~~------------------------------  148 (229)
T 2pze_A          137 ARISLARAV--------------------------------------YKD------------------------------  148 (229)
T ss_dssp             HHHHHHHHH--------------------------------------HSC------------------------------
T ss_pred             HHHHHHHHH--------------------------------------hcC------------------------------
Confidence            999865443                                      333                              


Q ss_pred             hccCCCcEEEEecCCCCCCHHHHHHHHHHH-HHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         273 MSFVPASTVILDEPTSGVDPYSRRSIWELL-IKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       273 ~~~~~~~~liLDEPtsgLD~~~~~~l~~~l-~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                           |+++||||||+|||+.++..+++.+ .++      .+|+|||++||+++++. .||++++|.+|+++..+++
T Consensus       149 -----p~lllLDEPts~LD~~~~~~i~~~l~~~~------~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~  213 (229)
T 2pze_A          149 -----ADLYLLDSPFGYLDVLTEKEIFESCVCKL------MANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTF  213 (229)
T ss_dssp             -----CSEEEEESTTTTSCHHHHHHHHHHCCCCC------TTTSEEEEECCCHHHHH-HCSEEEEEETTEEEEEECH
T ss_pred             -----CCEEEEECcccCCCHHHHHHHHHHHHHHh------hCCCEEEEEcCChHHHH-hCCEEEEEECCEEEEECCH
Confidence                 5899999999999999999999864 443      24789999999999886 5999999999999876654

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=5.1e-36  Score=317.70  Aligned_cols=204  Identities=22%  Similarity=0.288  Sum_probs=172.2

Q ss_pred             ccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------ccccccccccccc----C-CcccccccccCC
Q psy7365         311 SLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDM----K-SAPQKSYIGYCP  378 (601)
Q Consensus       311 ~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~----~-~~~~~~~ig~v~  378 (601)
                      .+.+.+++   +++++...-++.+++++...   +|++++++       +..|+.++.+.++    . ....+++|||+|
T Consensus        13 ~y~~~~~L---~~vsl~i~~Ge~~~llGpsG---sGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vf   86 (359)
T 3fvq_A           13 SFQNTPVL---NDISLSLDPGEILFIIGASG---CGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLV   86 (359)
T ss_dssp             EETTEEEE---EEEEEEECTTCEEEEEESTT---SSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEEC
T ss_pred             EECCEEEE---EeeEEEEcCCCEEEEECCCC---chHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEe
Confidence            34455555   89999999999999998522   56665443       3445554445443    1 123457799999


Q ss_pred             CCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCC
Q psy7365         379 QFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPT  458 (601)
Q Consensus       379 Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPT  458 (601)
                      |++.+|+.+||+||+.|....++.+..+.+++++++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||
T Consensus        87 Q~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPt  166 (359)
T 3fvq_A           87 QEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPF  166 (359)
T ss_dssp             TTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             CCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            99999999999999999877667677777788999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH-hCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         459 SGMDPGARRFLWTCIERAV-SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       459 sGLD~~~~~~i~~lL~~l~-~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      +|||+..+.++++.|+++. +.|+|+|++|||++++..+||||++|++|+++..|+++++...
T Consensus       167 s~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~  229 (359)
T 3fvq_A          167 SALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ  229 (359)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence            9999999999999887764 5699999999999999999999999999999999999998653

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=5.1e-36  Score=318.06  Aligned_cols=195  Identities=21%  Similarity=0.300  Sum_probs=170.5

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCcc------cccccccCCCCcccCCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSAP------QKSYIGYCPQFDALNDRLT  388 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~~------~~~~ig~v~Q~~~l~~~lT  388 (601)
                      +++++...-++.+++++...   +|+++++       +++.|+.++.+.++....      .+++|||+||++.+++.+|
T Consensus        45 ~~vsl~i~~Gei~~IiGpnG---aGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~T  121 (366)
T 3tui_C           45 NNVSLHVPAGQIYGVIGASG---AGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRT  121 (366)
T ss_dssp             EEEEEEECTTCEEEEECCTT---SSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSC
T ss_pred             EeeEEEEcCCCEEEEEcCCC---chHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCC
Confidence            89999999999999997522   5555543       334455555555543321      2568999999999999999


Q ss_pred             HHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHH
Q psy7365         389 PREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRF  468 (601)
Q Consensus       389 v~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~  468 (601)
                      |+||+.|....++.++.+.++++.++|+.+||.+..++++.+|||||||||+|||||+++|++|||||||+||||.+++.
T Consensus       122 V~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~  201 (366)
T 3tui_C          122 VFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRS  201 (366)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHH
Confidence            99999998888888877788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         469 LWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       469 i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ++++|++++++ |+|||++|||++++..+||||++|++|++++.|+++++..
T Consensus       202 i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~  253 (366)
T 3tui_C          202 ILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS  253 (366)
T ss_dssp             HHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHS
T ss_pred             HHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999754 9999999999999999999999999999999999998754

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=8.6e-36  Score=318.11  Aligned_cols=203  Identities=23%  Similarity=0.355  Sum_probs=175.1

Q ss_pred             ccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc-ccccccccCCCCcc
Q psy7365         311 SLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA-PQKSYIGYCPQFDA  382 (601)
Q Consensus       311 ~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~-~~~~~ig~v~Q~~~  382 (601)
                      .+.+.+++   +++++...-++.+++++...   +|++++++       +..|+.++.+.++... +.++.|||+||++.
T Consensus        12 ~yg~~~~L---~~vsl~i~~Ge~~~llGpsG---sGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~   85 (381)
T 3rlf_A           12 AWGEVVVS---KDINLDIHEGEFVVFVGPSG---CGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYA   85 (381)
T ss_dssp             EETTEEEE---EEEEEEECTTCEEEEECCTT---SSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCC
T ss_pred             EECCEEEE---eeeEEEECCCCEEEEEcCCC---chHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCc
Confidence            34445555   89999999999999998532   56665443       3445555555544322 23567999999999


Q ss_pred             cCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCC
Q psy7365         383 LNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD  462 (601)
Q Consensus       383 l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD  462 (601)
                      +|+.+||+||+.|..+.++.++.+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus        86 l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD  165 (381)
T 3rlf_A           86 LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD  165 (381)
T ss_dssp             CCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSC
T ss_pred             CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCC
Confidence            99999999999998888888887888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         463 PGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       463 ~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      +..+.++++.|+++.++ |+|+|++|||++++..+||||++|++|+++..|+++++.+
T Consensus       166 ~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~  223 (381)
T 3rlf_A          166 AALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH  223 (381)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence            99999999999999765 9999999999999999999999999999999999999865

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=100.00  E-value=3.8e-36  Score=302.30  Aligned_cols=195  Identities=23%  Similarity=0.295  Sum_probs=149.7

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM  123 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~  123 (601)
                      +.+++|++.|++  .+..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|       
T Consensus         4 l~~~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGs--GKSTL------l~~l~Gl~~p~~G~I~~~g-------   66 (237)
T 2cbz_A            4 ITVRNATFTWAR--SDPPTLNGITFSIPEGALVAVVGQVGC--GKSSL------LSALLAEMDKVEGHVAIKG-------   66 (237)
T ss_dssp             EEEEEEEEESCT--TSCCSEEEEEEEECTTCEEEEECSTTS--SHHHH------HHHHTTCSEEEEEEEEECS-------
T ss_pred             EEEEEEEEEeCC--CCCceeeeeEEEECCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCceEEECC-------
Confidence            458999999853  134689999999988      999999  56655      5799999999999999998       


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHH---HHHHcCCCc-----ccCCccccCChHHHhhh
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISN---MIGDLGIPH-----KRTSLANTLSGGMQRKL  195 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~---~l~~~gl~~-----~~~~~~~~LSgG~~qr~  195 (601)
                           .+||+||+|.+ +++||+||+.|+...   ..+. .+++.+   +++.+++.+     ..++++.+||||||||+
T Consensus        67 -----~i~~v~Q~~~~-~~~tv~enl~~~~~~---~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv  136 (237)
T 2cbz_A           67 -----SVAYVPQQAWI-QNDSLRENILFGCQL---EEPY-YRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRV  136 (237)
T ss_dssp             -----CEEEECSSCCC-CSEEHHHHHHTTSCC---CTTH-HHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHH
T ss_pred             -----EEEEEcCCCcC-CCcCHHHHhhCcccc---CHHH-HHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence                 38999999865 588999999886432   1211 112222   233344322     35788999999999999


Q ss_pred             hchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhcc
Q psy7365         196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSF  275 (601)
Q Consensus       196 ~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  275 (601)
                      ++||||                                      +.+                                 
T Consensus       137 ~lAraL--------------------------------------~~~---------------------------------  145 (237)
T 2cbz_A          137 SLARAV--------------------------------------YSN---------------------------------  145 (237)
T ss_dssp             HHHHHH--------------------------------------HHC---------------------------------
T ss_pred             HHHHHH--------------------------------------hcC---------------------------------
Confidence            865443                                      233                                 


Q ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       276 ~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                        |+++||||||+|||+.++..+++.|.+...   ..+|+|||++||+++++. .||++++|.+|+++..+++
T Consensus       146 --p~lllLDEPts~LD~~~~~~i~~~l~~~~~---~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~  212 (237)
T 2cbz_A          146 --ADIYLFDDPLSAVDAHVGKHIFENVIGPKG---MLKNKTRILVTHSMSYLP-QVDVIIVMSGGKISEMGSY  212 (237)
T ss_dssp             --CSEEEEESTTTTSCHHHHHHHHHHTTSTTS---TTTTSEEEEECSCSTTGG-GSSEEEEEETTEEEEEECH
T ss_pred             --CCEEEEeCcccccCHHHHHHHHHHHHHHHh---hcCCCEEEEEecChHHHH-hCCEEEEEeCCEEEEeCCH
Confidence              589999999999999999999998852210   124899999999999875 7999999999999876654

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=100.00  E-value=7.6e-36  Score=336.35  Aligned_cols=205  Identities=21%  Similarity=0.341  Sum_probs=166.0

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-  121 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-  121 (601)
                      .+.++||++.|++.  +.++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. 
T Consensus       341 ~i~~~~v~~~y~~~--~~~~l~~i~l~i~~G~~~~ivG~sGs--GKSTl------l~~l~g~~~p~~G~i~~~g~~~~~~  410 (582)
T 3b5x_A          341 EVDVKDVTFTYQGK--EKPALSHVSFSIPQGKTVALVGRSGS--GKSTI------ANLFTRFYDVDSGSICLDGHDVRDY  410 (582)
T ss_pred             eEEEEEEEEEcCCC--CccccccceEEECCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCCEEEECCEEhhhC
Confidence            35699999998532  25699999999988      999999  56655      579999999999999999999864 


Q ss_pred             chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCccc-----------CCccccCChH
Q psy7365         122 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKR-----------TSLANTLSGG  190 (601)
Q Consensus       122 ~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG  190 (601)
                      +....|+.+|||||+|.+|+. ||+||+.|+.. .+.+    ++++.++++.+|+.+..           ++...+||||
T Consensus       411 ~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgG  484 (582)
T 3b5x_A          411 KLTNLRRHFALVSQNVHLFND-TIANNIAYAAE-GEYT----REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGG  484 (582)
T ss_pred             CHHHHhcCeEEEcCCCccccc-cHHHHHhccCC-CCCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHH
Confidence            345678899999999999875 99999998641 1222    24466677777765543           4456899999


Q ss_pred             HHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHH
Q psy7365         191 MQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVL  270 (601)
Q Consensus       191 ~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~  270 (601)
                      ||||+++|||++                                      .+                            
T Consensus       485 q~qr~~iAral~--------------------------------------~~----------------------------  498 (582)
T 3b5x_A          485 QRQRVAIARALL--------------------------------------RD----------------------------  498 (582)
T ss_pred             HHHHHHHHHHHH--------------------------------------cC----------------------------
Confidence            999998655433                                      33                            


Q ss_pred             HhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         271 FAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       271 ~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                             |+++||||||++||+.++..+++.|+++     . +|+|+|++||+++.+. .||++++|++|+++..|+..
T Consensus       499 -------p~illlDEpts~LD~~~~~~i~~~l~~~-----~-~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~  563 (582)
T 3b5x_A          499 -------APVLILDEATSALDTESERAIQAALDEL-----Q-KNKTVLVIAHRLSTIE-QADEILVVDEGEIIERGRHA  563 (582)
T ss_pred             -------CCEEEEECccccCCHHHHHHHHHHHHHH-----c-CCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHH
Confidence                   5899999999999999999999999987     2 4899999999999886 69999999999998877643

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=2.9e-35  Score=300.11  Aligned_cols=202  Identities=20%  Similarity=0.255  Sum_probs=168.1

Q ss_pred             cCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC----------------c
Q psy7365         312 LSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS----------------A  368 (601)
Q Consensus       312 ~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~----------------~  368 (601)
                      +.+..++   +++++...-++.+++++...   +|++++++       +..|..++.+.+...                .
T Consensus        16 y~~~~vl---~~vsl~i~~Ge~~~liG~nG---sGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~   89 (262)
T 1b0u_A           16 YGGHEVL---KGVSLQARAGDVISIIGSSG---SGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLR   89 (262)
T ss_dssp             ETTEEEE---EEEEEEECTTCEEEEECCTT---SSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHH
T ss_pred             ECCEEEE---EeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHH
Confidence            3344554   88999999999999997522   55555432       334455455544421                1


Q ss_pred             ccccccccCCCCcccCCCCCHHHHHHHhH-HhcCCChhHHHHHHHHHHHHcCCCcc-cccccCcCChHHHHHHHHHHHHh
Q psy7365         369 PQKSYIGYCPQFDALNDRLTPREHLEFYS-RVRNLPSVLLNTIVNESLNKFALGHY-SDREVRTLSGGNKRKLSTAIALL  446 (601)
Q Consensus       369 ~~~~~ig~v~Q~~~l~~~lTv~E~L~~~~-~~~g~~~~~~~~~~~~lLe~~~L~~~-~~~~~~~LSgGqkQRl~lA~AL~  446 (601)
                      ..++.+||+||++.+++.+||+||+.+.. ..++.+..+.+++++++++.++|.+. .++++.+|||||||||+||+||+
T Consensus        90 ~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~  169 (262)
T 1b0u_A           90 LLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALA  169 (262)
T ss_dssp             HHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHH
T ss_pred             HHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHh
Confidence            12467999999999999999999999854 44555555556778999999999988 99999999999999999999999


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         447 GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       447 ~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ++|++|||||||+|||+.+++.++++|++++++|+|||++|||++++..+|||+++|++|++++.|+++++.+
T Consensus       170 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  242 (262)
T 1b0u_A          170 MEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFG  242 (262)
T ss_dssp             TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            9999999999999999999999999999998779999999999999999999999999999999999999865

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=3.9e-35  Score=299.43  Aligned_cols=203  Identities=21%  Similarity=0.284  Sum_probs=169.0

Q ss_pred             ccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccC--C---cccccccccCC
Q psy7365         311 SLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMK--S---APQKSYIGYCP  378 (601)
Q Consensus       311 ~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~--~---~~~~~~ig~v~  378 (601)
                      .+.+++++   +++++...-++.+++++...   +|++++++       +..|..++.+.+..  .   ...++++||+|
T Consensus        33 ~y~~~~vL---~~vsl~i~~Gei~~liG~NG---sGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~  106 (263)
T 2olj_A           33 SFGSLEVL---KGINVHIREGEVVVVIGPSG---SGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVF  106 (263)
T ss_dssp             EETTEEEE---EEEEEEECTTCEEEEECCTT---SSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEEC
T ss_pred             EECCEEEE---EeeEEEEcCCCEEEEEcCCC---CcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEe
Confidence            34444555   88999999999999997422   55555433       33445544454432  1   11246799999


Q ss_pred             CCcccCCCCCHHHHHHHhH-HhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECC
Q psy7365         379 QFDALNDRLTPREHLEFYS-RVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEP  457 (601)
Q Consensus       379 Q~~~l~~~lTv~E~L~~~~-~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEP  457 (601)
                      |++.+++.+||+||+.|.. ..++.+..+..++++++++.++|.+..++++.+|||||||||+||+||+.+|++||||||
T Consensus       107 Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEP  186 (263)
T 2olj_A          107 QRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEP  186 (263)
T ss_dssp             SSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred             CCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            9999999999999999864 455655555567789999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         458 TSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       458 TsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      |+|||+.+++.++++|++++++|+|||++|||+++++.+|||+++|++|++++.|+++++.+
T Consensus       187 ts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  248 (263)
T 2olj_A          187 TSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD  248 (263)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            99999999999999999998779999999999999999999999999999999999999865

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=4.7e-35  Score=297.66  Aligned_cols=203  Identities=26%  Similarity=0.352  Sum_probs=170.2

Q ss_pred             CCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC--cccccccccCCCCccc
Q psy7365         313 SGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS--APQKSYIGYCPQFDAL  383 (601)
Q Consensus       313 ~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~--~~~~~~ig~v~Q~~~l  383 (601)
                      .++.++   +++++...-++.+++++...   +|++++++       +..|..++.+.+...  ...++.+||+||++.+
T Consensus        26 ~~~~vl---~~vsl~i~~Gei~~l~G~NG---sGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l   99 (256)
T 1vpl_A           26 GKKEIL---KGISFEIEEGEIFGLIGPNG---AGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGA   99 (256)
T ss_dssp             TTEEEE---EEEEEEECTTCEEEEECCTT---SSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCC
T ss_pred             CCEEEE---EeeEEEEcCCcEEEEECCCC---CCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCC
Confidence            344444   88899889999999997522   56655443       333444444444322  1235679999999999


Q ss_pred             CCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCH
Q psy7365         384 NDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP  463 (601)
Q Consensus       384 ~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~  463 (601)
                      ++.+||+||+.++..+++.+..+.+++++++++.++|.+..++++.+|||||||||+||+||+.+|++|||||||+|||+
T Consensus       100 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~  179 (256)
T 1vpl_A          100 YRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDV  179 (256)
T ss_dssp             CTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCH
T ss_pred             CCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCH
Confidence            99999999999977666666555566789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHh
Q psy7365         464 GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKY  521 (601)
Q Consensus       464 ~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~  521 (601)
                      .+++.++++|++++++|+|||++|||+++++.+|||+++|++|++++.|+++++.+.+
T Consensus       180 ~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  237 (256)
T 1vpl_A          180 LNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY  237 (256)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHhc
Confidence            9999999999999878999999999999999999999999999999999999997654

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=2.4e-35  Score=302.76  Aligned_cols=195  Identities=19%  Similarity=0.279  Sum_probs=166.9

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-----cccccccccCCCCcc-cCCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-----APQKSYIGYCPQFDA-LNDRLT  388 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-----~~~~~~ig~v~Q~~~-l~~~lT  388 (601)
                      +++++...-++.+++++...   +|++++++       +..|..++.|.++..     ...+++|||+||++. .++.+|
T Consensus        25 ~~isl~i~~Ge~~~iiGpnG---sGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~t  101 (275)
T 3gfo_A           25 KGINMNIKRGEVTAILGGNG---VGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSAS  101 (275)
T ss_dssp             EEEEEEEETTSEEEEECCTT---SSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSB
T ss_pred             EeeEEEEcCCCEEEEECCCC---CCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCc
Confidence            89999999999999998522   55555433       344555555554421     123577999999973 445789


Q ss_pred             HHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHH
Q psy7365         389 PREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRF  468 (601)
Q Consensus       389 v~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~  468 (601)
                      |+||+.|....++.+..+..++++++++.++|.+..++++.+|||||||||+||+||+.+|++|||||||+||||.+++.
T Consensus       102 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~  181 (275)
T 3gfo_A          102 VYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSE  181 (275)
T ss_dssp             HHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHH
Confidence            99999998877777777777889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-hCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         469 LWTCIERAV-SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       469 i~~lL~~l~-~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ++++|++++ ++|+|||++|||++++..+||||++|++|++++.|+++++..
T Consensus       182 i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~  233 (275)
T 3gfo_A          182 IMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA  233 (275)
T ss_dssp             HHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred             HHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence            999999997 569999999999999999999999999999999999999854

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=5.8e-35  Score=309.54  Aligned_cols=195  Identities=22%  Similarity=0.341  Sum_probs=167.1

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-cccccccccCCCCcccCCCCCHHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-APQKSYIGYCPQFDALNDRLTPREHL  393 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-~~~~~~ig~v~Q~~~l~~~lTv~E~L  393 (601)
                      +++++...-++.+++++...   +|++++++       +..|+.++.+.++.. .+.++.+||+||++.+|+.+||+||+
T Consensus        32 ~~vsl~i~~Ge~~~llGpnG---sGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni  108 (355)
T 1z47_A           32 RGVSFQIREGEMVGLLGPSG---SGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNV  108 (355)
T ss_dssp             EEEEEEEETTCEEEEECSTT---SSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHH
T ss_pred             eeeEEEECCCCEEEEECCCC---CcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHH
Confidence            77788788888888887522   56665543       334444444444322 23457799999999999999999999


Q ss_pred             HHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHH
Q psy7365         394 EFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCI  473 (601)
Q Consensus       394 ~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL  473 (601)
                      .|....++.+..+.+++++++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||+|||+.+++++++.|
T Consensus       109 ~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l  188 (355)
T 1z47_A          109 SFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFV  188 (355)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            99877777776666788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         474 ERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       474 ~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      +++.++ |+|+|++|||++++..+||||++|++|+++..|+++++.+
T Consensus       189 ~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~  235 (355)
T 1z47_A          189 RQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYE  235 (355)
T ss_dssp             HHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            999765 9999999999999999999999999999999999999864

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=5.8e-35  Score=311.73  Aligned_cols=202  Identities=20%  Similarity=0.328  Sum_probs=171.3

Q ss_pred             cCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-------cccccccccC
Q psy7365         312 LSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-------APQKSYIGYC  377 (601)
Q Consensus       312 ~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-------~~~~~~ig~v  377 (601)
                      +.+.+++   +++++...-++.+++++...   +|++++++       +..|+.++.+.++..       .+.++++||+
T Consensus        13 y~~~~vl---~~vsl~i~~Ge~~~llGpnG---sGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v   86 (372)
T 1g29_1           13 FGEVTAV---REMSLEVKDGEFMILLGPSG---CGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMV   86 (372)
T ss_dssp             ETTEEEE---EEEEEEEETTCEEEEECSTT---SSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEE
T ss_pred             ECCEEEE---eeeEEEEcCCCEEEEECCCC---cHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEE
Confidence            3344555   88999889999999998532   56665443       334444444433321       2235779999


Q ss_pred             CCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECC
Q psy7365         378 PQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEP  457 (601)
Q Consensus       378 ~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEP  457 (601)
                      ||++.+|+++||+||+.|....++.+..+.+++++++++.++|.++.++++.+|||||||||+|||||+.+|++||||||
T Consensus        87 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP  166 (372)
T 1g29_1           87 FQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEP  166 (372)
T ss_dssp             CSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECT
T ss_pred             eCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence            99999999999999999988777777666677899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         458 TSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       458 TsGLD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      |+|||+..+.++++.|+++.++ |+|+|++|||++++..+||||++|++|+++..|+++++.+
T Consensus       167 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~  229 (372)
T 1g29_1          167 LSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD  229 (372)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             CccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence            9999999999999999998765 9999999999999999999999999999999999999864

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=100.00  E-value=1e-35  Score=335.29  Aligned_cols=205  Identities=20%  Similarity=0.305  Sum_probs=165.9

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-  121 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-  121 (601)
                      .+.++||++.|++.  +.++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. 
T Consensus       341 ~i~~~~v~~~y~~~--~~~~l~~v~~~i~~G~~~~ivG~sGs--GKSTL------l~~l~g~~~p~~G~i~~~g~~~~~~  410 (582)
T 3b60_A          341 DLEFRNVTFTYPGR--EVPALRNINLKIPAGKTVALVGRSGS--GKSTI------ASLITRFYDIDEGHILMDGHDLREY  410 (582)
T ss_dssp             CEEEEEEEECSSSS--SCCSEEEEEEEECTTCEEEEEECTTS--SHHHH------HHHHTTTTCCSEEEEEETTEETTTB
T ss_pred             cEEEEEEEEEcCCC--CCccccceeEEEcCCCEEEEECCCCC--CHHHH------HHHHhhccCCCCCeEEECCEEcccc
Confidence            35699999998531  25699999999988      999999  56655      579999999999999999999865 


Q ss_pred             chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCccccCChH
Q psy7365         122 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHK-----------RTSLANTLSGG  190 (601)
Q Consensus       122 ~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG  190 (601)
                      +....|+.+|||||+|.+|+. ||+||+.|+.. .+.+    ++++.++++.+|+.+.           .++...+||||
T Consensus       411 ~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgG  484 (582)
T 3b60_A          411 TLASLRNQVALVSQNVHLFND-TVANNIAYART-EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGG  484 (582)
T ss_dssp             CHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT-SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHH
T ss_pred             CHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC-CCCC----HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHH
Confidence            345677889999999999875 99999998641 1222    2345666777766543           44566899999


Q ss_pred             HHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHH
Q psy7365         191 MQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVL  270 (601)
Q Consensus       191 ~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~  270 (601)
                      ||||+++|||++                                      ++                            
T Consensus       485 q~qrl~iAral~--------------------------------------~~----------------------------  498 (582)
T 3b60_A          485 QRQRIAIARALL--------------------------------------RD----------------------------  498 (582)
T ss_dssp             HHHHHHHHHHHH--------------------------------------HC----------------------------
T ss_pred             HHHHHHHHHHHH--------------------------------------hC----------------------------
Confidence            999998655433                                      33                            


Q ss_pred             HhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         271 FAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       271 ~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                             |+++|||||||+||+.++..+++.|+++.      +|+|+|++||+++.+. .||++++|++|+++..|+..
T Consensus       499 -------p~illlDEpts~LD~~~~~~i~~~l~~~~------~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~  563 (582)
T 3b60_A          499 -------SPILILDEATSALDTESERAIQAALDELQ------KNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHS  563 (582)
T ss_dssp             -------CSEEEEETTTSSCCHHHHHHHHHHHHHHH------TTSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHH
T ss_pred             -------CCEEEEECccccCCHHHHHHHHHHHHHHh------CCCEEEEEeccHHHHH-hCCEEEEEECCEEEEecCHH
Confidence                   48999999999999999999999999872      3899999999999875 69999999999998877653

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=100.00  E-value=1.5e-35  Score=333.80  Aligned_cols=204  Identities=25%  Similarity=0.324  Sum_probs=164.0

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++||++.|++  ...++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. +
T Consensus       340 i~~~~v~~~y~~--~~~~~l~~isl~i~~G~~~~ivG~sGs--GKSTl------l~~l~g~~~p~~G~i~~~g~~~~~~~  409 (578)
T 4a82_A          340 IDIDHVSFQYND--NEAPILKDINLSIEKGETVAFVGMSGG--GKSTL------INLIPRFYDVTSGQILIDGHNIKDFL  409 (578)
T ss_dssp             EEEEEEEECSCS--SSCCSEEEEEEEECTTCEEEEECSTTS--SHHHH------HTTTTTSSCCSEEEEEETTEEGGGSC
T ss_pred             EEEEEEEEEcCC--CCCcceeeeEEEECCCCEEEEECCCCC--hHHHH------HHHHhcCCCCCCcEEEECCEEhhhCC
Confidence            458999999854  345699999999988      999999  56655      579999999999999999999864 4


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCC-----------CcccCCccccCChHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGI-----------PHKRTSLANTLSGGM  191 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgG~  191 (601)
                      ....|+.+|||||+|.+|+. ||+||+.|+...  .+.    +++.++++..++           ....++...+|||||
T Consensus       410 ~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~--~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq  482 (578)
T 4a82_A          410 TGSLRNQIGLVQQDNILFSD-TVKENILLGRPT--ATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQ  482 (578)
T ss_dssp             HHHHHHTEEEECSSCCCCSS-BHHHHHGGGCSS--CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHH
T ss_pred             HHHHhhheEEEeCCCccCcc-cHHHHHhcCCCC--CCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHH
Confidence            45678889999999999876 999999876321  222    234445555544           334456667999999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||+++|||++                                      ++                             
T Consensus       483 ~Qrv~lAral~--------------------------------------~~-----------------------------  495 (578)
T 4a82_A          483 KQRLSIARIFL--------------------------------------NN-----------------------------  495 (578)
T ss_dssp             HHHHHHHHHHH--------------------------------------HC-----------------------------
T ss_pred             HHHHHHHHHHH--------------------------------------cC-----------------------------
Confidence            99998665443                                      33                             


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                            |+++|||||||+||+.+...+.+.++++      .+|+|+|++||+++.+. .||++++|++|+++..|+...
T Consensus       496 ------p~illlDEpts~LD~~~~~~i~~~l~~~------~~~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~e  561 (578)
T 4a82_A          496 ------PPILILDEATSALDLESESIIQEALDVL------SKDRTTLIVAHRLSTIT-HADKIVVIENGHIVETGTHRE  561 (578)
T ss_dssp             ------CSEEEEESTTTTCCHHHHHHHHHHHHHH------TTTSEEEEECSSGGGTT-TCSEEEEEETTEEEEEECHHH
T ss_pred             ------CCEEEEECccccCCHHHHHHHHHHHHHH------cCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHH
Confidence                  4899999999999999999999999887      24789999999999986 599999999999998886543

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=7.3e-35  Score=309.68  Aligned_cols=202  Identities=21%  Similarity=0.325  Sum_probs=171.9

Q ss_pred             cCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc-ccccccccCCCCccc
Q psy7365         312 LSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA-PQKSYIGYCPQFDAL  383 (601)
Q Consensus       312 ~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~-~~~~~ig~v~Q~~~l  383 (601)
                      +.+.+++   +++++...-++.+++++...   +|++++++       +..|+.++.+.++... +.++.+||+||++.+
T Consensus        13 y~~~~vl---~~vsl~i~~Ge~~~llGpnG---sGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l   86 (362)
T 2it1_A           13 FGNFTAL---NNINLKIKDGEFMALLGPSG---SGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWAL   86 (362)
T ss_dssp             SSSSEEE---EEEEEEECTTCEEEEECCTT---SSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCC
T ss_pred             ECCEEEE---EeeEEEECCCCEEEEECCCC---chHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCccc
Confidence            3345555   88999888999999997522   56665543       3344444445444322 235679999999999


Q ss_pred             CCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCH
Q psy7365         384 NDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP  463 (601)
Q Consensus       384 ~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~  463 (601)
                      |+++||+||+.|....++.+..+.+++++++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus        87 ~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~  166 (362)
T 2it1_A           87 YPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA  166 (362)
T ss_dssp             CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCH
T ss_pred             CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH
Confidence            99999999999987777777666677899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         464 GARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       464 ~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ..+.++++.|+++.++ |+|+|++|||++++..+||||++|++|+++..|+++++.+
T Consensus       167 ~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~  223 (362)
T 2it1_A          167 LLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYY  223 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            9999999999999755 9999999999999999999999999999999999999864

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=1.2e-35  Score=334.99  Aligned_cols=208  Identities=24%  Similarity=0.366  Sum_probs=166.2

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++|+++.|+.  .+.++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. +
T Consensus       342 i~~~~v~~~y~~--~~~~~l~~isl~i~~Ge~~~ivG~sGs--GKSTl------l~~l~g~~~~~~G~i~i~g~~i~~~~  411 (587)
T 3qf4_A          342 VSFENVEFRYFE--NTDPVLSGVNFSVKPGSLVAVLGETGS--GKSTL------MNLIPRLIDPERGRVEVDELDVRTVK  411 (587)
T ss_dssp             EEEEEEEECSSS--SSCCSEEEEEEEECTTCEEEEECSSSS--SHHHH------HHTTTTSSCCSEEEEEESSSBGGGBC
T ss_pred             EEEEEEEEEcCC--CCCcceeceEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCccCCCcEEEECCEEcccCC
Confidence            559999999753  345799999999988      999999  56654      579999999999999999999864 3


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHH-----HHHHHHHc--CCCcccCCccccCChHHHhhh
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIGDL--GIPHKRTSLANTLSGGMQRKL  195 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LSgG~~qr~  195 (601)
                      ....|+.+|||||+|.+|+. ||+||+.|+...  .+.++..+.     +.+.++.+  |++...++.+.+||||||||+
T Consensus       412 ~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv  488 (587)
T 3qf4_A          412 LKDLRGHISAVPQETVLFSG-TIKENLKWGRED--ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRL  488 (587)
T ss_dssp             HHHHHHHEEEECSSCCCCSE-EHHHHHTTTCSS--CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHH
T ss_pred             HHHHHhheEEECCCCcCcCc-cHHHHHhccCCC--CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHH
Confidence            45678889999999999865 999999876432  222222211     12233333  556667888999999999999


Q ss_pred             hchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhcc
Q psy7365         196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSF  275 (601)
Q Consensus       196 ~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  275 (601)
                      ++|||++                                      ++                                 
T Consensus       489 ~lARal~--------------------------------------~~---------------------------------  497 (587)
T 3qf4_A          489 SIARALV--------------------------------------KK---------------------------------  497 (587)
T ss_dssp             HHHHHHH--------------------------------------TC---------------------------------
T ss_pred             HHHHHHH--------------------------------------cC---------------------------------
Confidence            8655433                                      33                                 


Q ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       276 ~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                        |+++|||||||+||+.+.+.+.+.|+++      .+|+|+|++||+++.+. .|||+++|++|+++..|+...
T Consensus       498 --p~illlDEpts~LD~~~~~~i~~~l~~~------~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~e  563 (587)
T 3qf4_A          498 --PKVLILDDCTSSVDPITEKRILDGLKRY------TKGCTTFIITQKIPTAL-LADKILVLHEGKVAGFGTHKE  563 (587)
T ss_dssp             --CSEEEEESCCTTSCHHHHHHHHHHHHHH------STTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEECHHH
T ss_pred             --CCEEEEECCcccCCHHHHHHHHHHHHHh------CCCCEEEEEecChHHHH-hCCEEEEEECCEEEEECCHHH
Confidence              4899999999999999999999999886      25899999999999875 899999999999998886543

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=4.7e-35  Score=310.84  Aligned_cols=202  Identities=20%  Similarity=0.330  Sum_probs=169.7

Q ss_pred             cCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc-ccccccccCCCCccc
Q psy7365         312 LSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA-PQKSYIGYCPQFDAL  383 (601)
Q Consensus       312 ~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~-~~~~~ig~v~Q~~~l  383 (601)
                      +.+.+++   +++++...-++.+++++...   +|++++++       +..|+.++.+.++... +.++++||+||++.+
T Consensus        13 y~~~~vl---~~vsl~i~~Ge~~~llGpnG---sGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l   86 (359)
T 2yyz_A           13 FGKVKAV---DGVSFEVKDGEFVALLGPSG---CGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYAL   86 (359)
T ss_dssp             ETTEEEE---EEEEEEECTTCEEEEECSTT---SSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCC
T ss_pred             ECCEEEE---eeeEEEEcCCCEEEEEcCCC---chHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCccc
Confidence            3344555   88999888999999998532   56665543       3345554555444322 235679999999999


Q ss_pred             CCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCH
Q psy7365         384 NDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP  463 (601)
Q Consensus       384 ~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~  463 (601)
                      |+++||+||+.|..+.++.+..+.+++++++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus        87 ~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~  166 (359)
T 2yyz_A           87 YPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA  166 (359)
T ss_dssp             CTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred             CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence            99999999999976665555444556789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         464 GARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       464 ~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ..++.+++.|+++.++ |+|+|++|||++++..+||||++|++|+++..|+++++.+
T Consensus       167 ~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~  223 (359)
T 2yyz_A          167 NLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYD  223 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            9999999999998765 9999999999999999999999999999999999999864

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=1.4e-35  Score=335.18  Aligned_cols=203  Identities=26%  Similarity=0.371  Sum_probs=164.2

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++||++.|++   +.++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. +
T Consensus       355 i~~~~v~~~y~~---~~~~l~~isl~i~~G~~~~ivG~sGs--GKSTl------l~~l~g~~~p~~G~i~~~g~~i~~~~  423 (598)
T 3qf4_B          355 IEFKNVWFSYDK---KKPVLKDITFHIKPGQKVALVGPTGS--GKTTI------VNLLMRFYDVDRGQILVDGIDIRKIK  423 (598)
T ss_dssp             EEEEEEECCSSS---SSCSCCSEEEECCTTCEEEEECCTTS--STTHH------HHHHTTSSCCSEEEEEETTEEGGGSC
T ss_pred             EEEEEEEEECCC---CCccccceEEEEcCCCEEEEECCCCC--cHHHH------HHHHhcCcCCCCeEEEECCEEhhhCC
Confidence            459999999853   35699999999988      999999  67765      579999999999999999999864 4


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccC-----------CccccCChHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRT-----------SLANTLSGGM  191 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG~  191 (601)
                      ....|+.+|||||+|.+|+ .||+||+.|+..  +.+.+    ++.++++.+++.+..+           +...+|||||
T Consensus       424 ~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq  496 (598)
T 3qf4_B          424 RSSLRSSIGIVLQDTILFS-TTVKENLKYGNP--GATDE----EIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQ  496 (598)
T ss_dssp             HHHHHHHEEEECTTCCCCS-SBHHHHHHSSST--TCCTT----HHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHH
T ss_pred             HHHHHhceEEEeCCCcccc-ccHHHHHhcCCC--CCCHH----HHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHH
Confidence            5567889999999999885 599999987632  22222    3445555555544433           3447999999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||+++|||++                                      .+                             
T Consensus       497 ~Qrv~iAral~--------------------------------------~~-----------------------------  509 (598)
T 3qf4_B          497 RQLLAITRAFL--------------------------------------AN-----------------------------  509 (598)
T ss_dssp             HHHHHHHHHHH--------------------------------------TC-----------------------------
T ss_pred             HHHHHHHHHHh--------------------------------------cC-----------------------------
Confidence            99998655433                                      33                             


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                            |+++|||||||+||+.+...+.+.|+++.      +|+|+|++||+++.+.. ||+|++|++|+++..|+...
T Consensus       510 ------p~illlDEpts~LD~~~~~~i~~~l~~~~------~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~  575 (598)
T 3qf4_B          510 ------PKILILDEATSNVDTKTEKSIQAAMWKLM------EGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDE  575 (598)
T ss_dssp             ------CSEEEECCCCTTCCHHHHHHHHHHHHHHH------TTSEEEEESCCTTHHHH-CSEEEEECSSSEEECSCHHH
T ss_pred             ------CCEEEEECCccCCCHHHHHHHHHHHHHHc------CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHH
Confidence                  48999999999999999999999999872      48999999999999865 99999999999998887543

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=4.9e-35  Score=310.37  Aligned_cols=195  Identities=23%  Similarity=0.337  Sum_probs=167.1

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC------cccccccccCCCCcccCCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS------APQKSYIGYCPQFDALNDRLT  388 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~------~~~~~~ig~v~Q~~~l~~~lT  388 (601)
                      +++++...-++.+++++...   +|++++++       +..|+.++.+.++..      .+.++++||+||++.+|+++|
T Consensus        22 ~~vsl~i~~Ge~~~llGpnG---sGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~lt   98 (353)
T 1oxx_K           22 DNVNINIENGERFGILGPSG---AGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLT   98 (353)
T ss_dssp             EEEEEEECTTCEEEEECSCH---HHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSC
T ss_pred             eceEEEECCCCEEEEECCCC---CcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCC
Confidence            78888888899999998532   56665443       334444444433321      234678999999999999999


Q ss_pred             HHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHH
Q psy7365         389 PREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRF  468 (601)
Q Consensus       389 v~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~  468 (601)
                      |+||+.|....++.+..+.+++++++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||+|||+..+.+
T Consensus        99 v~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~  178 (353)
T 1oxx_K           99 AFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS  178 (353)
T ss_dssp             HHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHH
Confidence            99999998766666666667789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         469 LWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       469 i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      +++.|+++.++ |+|+|++|||++++..+||||++|++|+++..|+++++.+
T Consensus       179 l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~  230 (353)
T 1oxx_K          179 ARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD  230 (353)
T ss_dssp             HHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999755 9999999999999999999999999999999999999854

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=1.9e-34  Score=287.48  Aligned_cols=188  Identities=21%  Similarity=0.261  Sum_probs=158.8

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcc------c-ccccccCCCCcccCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAP------Q-KSYIGYCPQFDALNDRL  387 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~------~-~~~ig~v~Q~~~l~~~l  387 (601)
                      +++++...-++.+++++...   +|++++++       +..|+.++.+.+.....      . ++.+||+||++.+++.+
T Consensus        21 ~~vsl~i~~Ge~~~iiG~nG---sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~   97 (224)
T 2pcj_A           21 KGISLSVKKGEFVSIIGASG---SGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPEL   97 (224)
T ss_dssp             EEEEEEEETTCEEEEEECTT---SCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTS
T ss_pred             eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCC
Confidence            88999999999999997522   55555433       33444444454443211      1 25699999999999999


Q ss_pred             CHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHH
Q psy7365         388 TPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARR  467 (601)
Q Consensus       388 Tv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~  467 (601)
                      ||+||+.+....++.+..+..+++.++++.++|.+..++++.+|||||||||+||+||+++|++|||||||+|||+.+++
T Consensus        98 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~  177 (224)
T 2pcj_A           98 TALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTK  177 (224)
T ss_dssp             CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHH
T ss_pred             CHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHH
Confidence            99999998776666655555677899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecC
Q psy7365         468 FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS  513 (601)
Q Consensus       468 ~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~  513 (601)
                      .++++|++++++|+|||++|||++++ .+|||+++|++|++++.|+
T Consensus       178 ~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~  222 (224)
T 2pcj_A          178 RVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT  222 (224)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence            99999999987799999999999998 8999999999999999886

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=9.1e-35  Score=309.97  Aligned_cols=202  Identities=20%  Similarity=0.320  Sum_probs=163.8

Q ss_pred             cCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc-ccccccccCCCCccc
Q psy7365         312 LSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA-PQKSYIGYCPQFDAL  383 (601)
Q Consensus       312 ~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~-~~~~~ig~v~Q~~~l  383 (601)
                      +.+.+++   +++++...-++.+++++...   +|++++++       +..|+.++.+.++... +.++++||+||++.+
T Consensus        21 y~~~~vl---~~vsl~i~~Ge~~~llGpnG---sGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l   94 (372)
T 1v43_A           21 FGNFTAV---NKLNLTIKDGEFLVLLGPSG---CGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAV   94 (372)
T ss_dssp             ETTEEEE---EEEEEEECTTCEEEEECCTT---SSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC----
T ss_pred             ECCEEEE---eeeEEEECCCCEEEEECCCC---ChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCccc
Confidence            3344454   88898888999999997522   56665543       3344444445444322 235779999999999


Q ss_pred             CCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCH
Q psy7365         384 NDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP  463 (601)
Q Consensus       384 ~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~  463 (601)
                      |+++||+||+.|....++.+..+.+++++++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus        95 ~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~  174 (372)
T 1v43_A           95 WPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA  174 (372)
T ss_dssp             --CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred             CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence            99999999999976666666666677899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         464 GARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       464 ~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      ..+.++++.|+++.++ |+|+|++|||++++..+||||++|++|+++..|+++++..
T Consensus       175 ~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~  231 (372)
T 1v43_A          175 KLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL  231 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            9999999999999765 9999999999999999999999999999999999999864

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=1.5e-34  Score=293.97  Aligned_cols=199  Identities=21%  Similarity=0.251  Sum_probs=164.1

Q ss_pred             cCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc----ccccccccCCCC
Q psy7365         312 LSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA----PQKSYIGYCPQF  380 (601)
Q Consensus       312 ~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~----~~~~~ig~v~Q~  380 (601)
                      +.+++++   +++++...-++.+++++...   +|++++++       +..|..++.+.+....    ..++.+||+||+
T Consensus        17 y~~~~vl---~~vsl~i~~Ge~~~liG~nG---sGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~   90 (257)
T 1g6h_A           17 FGEFKAL---DGVSISVNKGDVTLIIGPNG---SGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQT   90 (257)
T ss_dssp             ETTEEEE---EEECCEEETTCEEEEECSTT---SSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCC
T ss_pred             ECCEeeE---eeeEEEEeCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccC
Confidence            3344554   88999999999999997522   56555443       3344444445444321    124579999999


Q ss_pred             cccCCCCCHHHHHHHhHHh--cC-----------CChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhC
Q psy7365         381 DALNDRLTPREHLEFYSRV--RN-----------LPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG  447 (601)
Q Consensus       381 ~~l~~~lTv~E~L~~~~~~--~g-----------~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~  447 (601)
                      +.+++.+||+||+.+....  ++           .+..+.+++++++++.++|.+..++++.+|||||||||+||+||++
T Consensus        91 ~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~  170 (257)
T 1g6h_A           91 PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMT  170 (257)
T ss_dssp             CGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT
T ss_pred             CccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHc
Confidence            9999999999999886433  23           2334455678999999999999999999999999999999999999


Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHH
Q psy7365         448 NTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATH  516 (601)
Q Consensus       448 ~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~  516 (601)
                      +|++|||||||+|||+.+++.++++|++++++|+|||++|||++++..+|||+++|++|++++.|++++
T Consensus       171 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  239 (257)
T 1g6h_A          171 NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE  239 (257)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred             CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence            999999999999999999999999999998779999999999999999999999999999999999988

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=2e-34  Score=289.34  Aligned_cols=193  Identities=19%  Similarity=0.280  Sum_probs=158.2

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcc-------cccccccCCCCcccCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAP-------QKSYIGYCPQFDALNDRL  387 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~-------~~~~ig~v~Q~~~l~~~l  387 (601)
                      +++++...-++.+++++...   +|++++++       +..|+.++.+.+.....       .++.+||+||++.+++.+
T Consensus        22 ~~isl~i~~Ge~~~iiG~nG---sGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~   98 (235)
T 3tif_A           22 KNVNLNIKEGEFVSIMGPSG---SGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL   98 (235)
T ss_dssp             EEEEEEECTTCEEEEECSTT---SSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTS
T ss_pred             EeeeEEEcCCCEEEEECCCC---CcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCC
Confidence            89999999999999998522   56555443       34455555554443221       134699999999999999


Q ss_pred             CHHHHHHHhHHhc---CCChhHHHHHHHHHHHHcCCCcc-cccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCH
Q psy7365         388 TPREHLEFYSRVR---NLPSVLLNTIVNESLNKFALGHY-SDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP  463 (601)
Q Consensus       388 Tv~E~L~~~~~~~---g~~~~~~~~~~~~lLe~~~L~~~-~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~  463 (601)
                      ||+||+.+.....   +.+..+..+++.++++.++|.+. .++++.+|||||||||+||+||+++|++|||||||+|||+
T Consensus        99 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~  178 (235)
T 3tif_A           99 TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDS  178 (235)
T ss_dssp             CHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred             cHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence            9999999866543   34455566788999999999875 4999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHH
Q psy7365         464 GARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  518 (601)
Q Consensus       464 ~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~  518 (601)
                      .++..++++|++++++ |+|||++|||++.+ .+||||++|++|+++..++++++.
T Consensus       179 ~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~~~~~~~  233 (235)
T 3tif_A          179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKLRGFD  233 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEECC---
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEcChhhhc
Confidence            9999999999999765 99999999999965 799999999999999999887754

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=2.9e-34  Score=303.74  Aligned_cols=192  Identities=21%  Similarity=0.363  Sum_probs=164.4

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-cccccccccCCCCcccCCCCCHHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-APQKSYIGYCPQFDALNDRLTPREHL  393 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-~~~~~~ig~v~Q~~~l~~~lTv~E~L  393 (601)
                      +++++...-++.+++++...   +|++++++       +..|+.++.+.++.. .+.++.+||+||++.+|+++||+||+
T Consensus        17 ~~vsl~i~~Ge~~~llGpnG---sGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl   93 (348)
T 3d31_A           17 DNLSLKVESGEYFVILGPTG---AGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNL   93 (348)
T ss_dssp             EEEEEEECTTCEEEEECCCT---HHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHH
T ss_pred             eeeEEEEcCCCEEEEECCCC---ccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHH
Confidence            88899888999999998532   56665543       334444444444432 22357899999999999999999999


Q ss_pred             HHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHH
Q psy7365         394 EFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCI  473 (601)
Q Consensus       394 ~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL  473 (601)
                      .|....++.+..   ++++++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||+|||+..++.+++.|
T Consensus        94 ~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l  170 (348)
T 3d31_A           94 EFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML  170 (348)
T ss_dssp             HHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH
Confidence            998766655433   67899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHh-CCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         474 ERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       474 ~~l~~-~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      +++.+ .|+|+|++|||++++..+||||++|++|+++..|+++++.+
T Consensus       171 ~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~  217 (348)
T 3d31_A          171 SVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE  217 (348)
T ss_dssp             HHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred             HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            99865 49999999999999999999999999999999999999864

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=3e-34  Score=289.10  Aligned_cols=193  Identities=25%  Similarity=0.332  Sum_probs=160.3

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC-cccccccccCCCCcccCCCCCHHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS-APQKSYIGYCPQFDALNDRLTPREHL  393 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~-~~~~~~ig~v~Q~~~l~~~lTv~E~L  393 (601)
                      +++++...- +.+++++...   +|++++++       +..|..++.+.+... ...++++||+||++.+++.+||+||+
T Consensus        16 ~~isl~i~~-e~~~liG~nG---sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl   91 (240)
T 2onk_A           16 LNVDFEMGR-DYCVLLGPTG---AGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNI   91 (240)
T ss_dssp             EEEEEEECS-SEEEEECCTT---SSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHH
T ss_pred             eeeEEEECC-EEEEEECCCC---CCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHH
Confidence            788888888 9999997522   55555433       334444444544322 22356799999999999999999999


Q ss_pred             HHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHH
Q psy7365         394 EFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCI  473 (601)
Q Consensus       394 ~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL  473 (601)
                      .|....++.  ...+++++++++.++|.+..++++.+||||||||++||+||+++|++|||||||+|||+.+++.++++|
T Consensus        92 ~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l  169 (240)
T 2onk_A           92 AYGLRNVER--VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL  169 (240)
T ss_dssp             HTTCTTSCH--HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHH
T ss_pred             HHHHHHcCC--chHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            886543332  222567889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         474 ERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       474 ~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      ++++++ |+|||++|||++++..+|||+++|++|++++.|+++++.+.
T Consensus       170 ~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  217 (240)
T 2onk_A          170 RFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA  217 (240)
T ss_dssp             HHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            999754 99999999999999999999999999999999999998653

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=4.6e-34  Score=287.59  Aligned_cols=201  Identities=20%  Similarity=0.251  Sum_probs=163.6

Q ss_pred             cCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcc----cccccccCCCC
Q psy7365         312 LSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAP----QKSYIGYCPQF  380 (601)
Q Consensus       312 ~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~----~~~~ig~v~Q~  380 (601)
                      +.++.++   +++++...-++.+++++...   +|++++++       +..|+.++.+.+.....    .++.+||+||+
T Consensus        16 y~~~~vl---~~vsl~i~~Ge~~~l~G~nG---sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~   89 (240)
T 1ji0_A           16 YGAIHAI---KGIDLKVPRGQIVTLIGANG---AGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEG   89 (240)
T ss_dssp             ETTEEEE---EEEEEEEETTCEEEEECSTT---SSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSS
T ss_pred             ECCeeEE---eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecC
Confidence            3344444   88999889999999997532   55555443       33444444454443211    13459999999


Q ss_pred             cccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcC-CCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCC
Q psy7365         381 DALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFA-LGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTS  459 (601)
Q Consensus       381 ~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~-L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTs  459 (601)
                      +.+++.+||+||+.++.. ...+..+..+.++++++.++ +.+..++++.+|||||||||+||+||+++|++|||||||+
T Consensus        90 ~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts  168 (240)
T 1ji0_A           90 RRIFPELTVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSL  168 (240)
T ss_dssp             CCCCTTSBHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTT
T ss_pred             CccCCCCcHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence            999999999999988642 22233445567889999995 9888999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         460 GMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       460 GLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      |||+.+++.++++|++++++|+|||++|||++++..+|||+++|++|++++.|+++++.+
T Consensus       169 ~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  228 (240)
T 1ji0_A          169 GLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD  228 (240)
T ss_dssp             TCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence            999999999999999998789999999999999999999999999999999999988753

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=6.7e-34  Score=290.76  Aligned_cols=199  Identities=17%  Similarity=0.244  Sum_probs=165.6

Q ss_pred             cCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc---ccccccccCCCCc
Q psy7365         312 LSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA---PQKSYIGYCPQFD  381 (601)
Q Consensus       312 ~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~---~~~~~ig~v~Q~~  381 (601)
                      +.+++++   +++++...-++.+++++...   +|++++++       +..|..++.|.+....   ..++.+||+||++
T Consensus        21 ~~~~~vL---~~vsl~i~~Ge~~~liG~nG---sGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~   94 (266)
T 4g1u_C           21 VQQQALI---NDVSLHIASGEMVAIIGPNG---AGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYS   94 (266)
T ss_dssp             ETTEEEE---EEEEEEEETTCEEEEECCTT---SCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCC
T ss_pred             eCCeeEE---EeeEEEEcCCCEEEEECCCC---CcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCC
Confidence            3455655   89999999999999998522   55555433       3445555555554322   2346699999999


Q ss_pred             ccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhC------CCCEEEEE
Q psy7365         382 ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG------NTPLIFLD  455 (601)
Q Consensus       382 ~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~------~P~lLlLD  455 (601)
                      .+++.+||+||+.+....+  .....+++++++++.+++.+..++++.+|||||||||+||+||++      +|++||||
T Consensus        95 ~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllD  172 (266)
T 4g1u_C           95 ELAFPFSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLD  172 (266)
T ss_dssp             CCCSCCBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEEC
T ss_pred             ccCCCCCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEe
Confidence            9888899999999875443  233456678999999999999999999999999999999999999      99999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHH
Q psy7365         456 EPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  518 (601)
Q Consensus       456 EPTsGLD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~  518 (601)
                      |||+|||+.++..++++|++++++ |+|||++|||++++..+||||++|++|++++.|+++++.
T Consensus       173 EPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~  236 (266)
T 4g1u_C          173 EPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL  236 (266)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred             CccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence            999999999999999999999765 579999999999999999999999999999999999874

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=1.7e-33  Score=287.63  Aligned_cols=196  Identities=21%  Similarity=0.280  Sum_probs=162.2

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcccccccccCCCCc-ccCCCCCHHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAPQKSYIGYCPQFD-ALNDRLTPREHL  393 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~~~~~ig~v~Q~~-~l~~~lTv~E~L  393 (601)
                      +++++...-++.+++++...   +|++++++       +..|..++.+.+......++.+||+||++ .+++.+||+||+
T Consensus        24 ~~vsl~i~~Ge~~~liG~nG---sGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl  100 (266)
T 2yz2_A           24 ENVSLVINEGECLLVAGNTG---SGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEV  100 (266)
T ss_dssp             EEEEEEECTTCEEEEECSTT---SSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHH
T ss_pred             eeeEEEEcCCCEEEEECCCC---CcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHH
Confidence            88999999999999997532   56555443       33344444444332223456799999996 567779999999


Q ss_pred             HHhHHhcCCChhHHHHHHHHHHHHcCCC--cccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHH
Q psy7365         394 EFYSRVRNLPSVLLNTIVNESLNKFALG--HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT  471 (601)
Q Consensus       394 ~~~~~~~g~~~~~~~~~~~~lLe~~~L~--~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~  471 (601)
                      .++...+ .+..+.+++++++++.++|.  +..++++.+|||||||||+||+||+++|++|||||||+|||+.+++.+++
T Consensus       101 ~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~  179 (266)
T 2yz2_A          101 AFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLR  179 (266)
T ss_dssp             HHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred             HHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHH
Confidence            9865432 33333356788999999999  89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHh
Q psy7365         472 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKY  521 (601)
Q Consensus       472 lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~  521 (601)
                      +|++++++|+|||++|||++++..+|||+++|++|+++..|+++++.+..
T Consensus       180 ~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  229 (266)
T 2yz2_A          180 IVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY  229 (266)
T ss_dssp             HHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHHS
T ss_pred             HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCc
Confidence            99999777999999999999999999999999999999999999987654

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=100.00  E-value=6.9e-34  Score=294.05  Aligned_cols=185  Identities=23%  Similarity=0.312  Sum_probs=134.6

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      ...+++|++.+      ..+++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|      
T Consensus        40 ~l~~~~l~~~~------~~vl~~isl~i~~Ge~~~i~G~NGs--GKSTL------lk~l~Gl~~p~~G~I~~~g------   99 (290)
T 2bbs_A           40 SLSFSNFSLLG------TPVLKDINFKIERGQLLAVAGSTGA--GKTSL------LMMIMGELEPSEGKIKHSG------   99 (290)
T ss_dssp             ----------C------CCSEEEEEEEECTTCEEEEEESTTS--SHHHH------HHHHTTSSCEEEEEEECCS------
T ss_pred             eEEEEEEEEcC------ceEEEeeEEEEcCCCEEEEECCCCC--cHHHH------HHHHhcCCCCCCcEEEECC------
Confidence            35689999852      3589999999988      999999  56655      5799999999999999988      


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCccccCChHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHK-----------RTSLANTLSGGM  191 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~  191 (601)
                            .+||+||++.+|+. ||+||+. +..   .+.    .+..++++.+++.+.           .++.+.+|||||
T Consensus       100 ------~i~~v~Q~~~l~~~-tv~enl~-~~~---~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq  164 (290)
T 2bbs_A          100 ------RISFCSQNSWIMPG-TIKENII-GVS---YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQ  164 (290)
T ss_dssp             ------CEEEECSSCCCCSS-BHHHHHH-TTC---CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHH
T ss_pred             ------EEEEEeCCCccCcc-cHHHHhh-Ccc---cch----HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHH
Confidence                  38999999988875 9999997 321   121    123344555554332           234568999999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||+++||||                                      +++                             
T Consensus       165 ~QRv~lAraL--------------------------------------~~~-----------------------------  177 (290)
T 2bbs_A          165 RARISLARAV--------------------------------------YKD-----------------------------  177 (290)
T ss_dssp             HHHHHHHHHH--------------------------------------HSC-----------------------------
T ss_pred             HHHHHHHHHH--------------------------------------HCC-----------------------------
Confidence            9999865433                                      333                             


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHH-HHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELL-IKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  348 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l-~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~  348 (601)
                            |+++||||||+|||+.++..+++.+ .++      ..|+|||++||+++++. .||++++|.+|+++..+++
T Consensus       178 ------p~lllLDEPts~LD~~~~~~i~~~ll~~~------~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~g~~  242 (290)
T 2bbs_A          178 ------ADLYLLDSPFGYLDVLTEKEIFESCVCKL------MANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTF  242 (290)
T ss_dssp             ------CSEEEEESTTTTCCHHHHHHHHHHCCCCC------TTTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECH
T ss_pred             ------CCEEEEECCcccCCHHHHHHHHHHHHHHh------hCCCEEEEEecCHHHHH-cCCEEEEEECCeEEEeCCH
Confidence                  5899999999999999999999864 333      24899999999999886 5999999999999876654

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=1.4e-32  Score=278.97  Aligned_cols=190  Identities=22%  Similarity=0.320  Sum_probs=158.1

Q ss_pred             CcEEEEEecchhHHHhcCCEEEEecCCccccccCccccccccc-----cccccccccCCcccccccccCCCCcccCCCCC
Q psy7365         314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFA-----RGYYLSLDMKSAPQKSYIGYCPQFDALNDRLT  388 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~~~g-----~g~~igld~~~~~~~~~ig~v~Q~~~l~~~lT  388 (601)
                      ++.++   +++++...-++.+++++...   .|++++++.-.+     .|.+.        .++.+||+||++.+++.+|
T Consensus        17 ~~~vl---~~isl~i~~Ge~~~l~G~nG---sGKSTLl~~l~Gl~~p~~G~I~--------~~~~i~~v~q~~~~~~~~t   82 (253)
T 2nq2_C           17 ENFLF---QQLNFDLNKGDILAVLGQNG---CGKSTLLDLLLGIHRPIQGKIE--------VYQSIGFVPQFFSSPFAYS   82 (253)
T ss_dssp             TTEEE---EEEEEEEETTCEEEEECCSS---SSHHHHHHHHTTSSCCSEEEEE--------ECSCEEEECSCCCCSSCCB
T ss_pred             CCeEE---EEEEEEECCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCcEEE--------EeccEEEEcCCCccCCCCC
Confidence            45555   88999889999999998532   566665542111     11111        3467999999999998999


Q ss_pred             HHHHHHHhHHhc-C---CChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHH
Q psy7365         389 PREHLEFYSRVR-N---LPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG  464 (601)
Q Consensus       389 v~E~L~~~~~~~-g---~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~  464 (601)
                      |+||+.+....+ +   .+.....++++++++.++|.+..++++.+|||||||||+||+||+.+|++|||||||+|||+.
T Consensus        83 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~  162 (253)
T 2nq2_C           83 VLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLA  162 (253)
T ss_dssp             HHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHH
T ss_pred             HHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence            999998864322 2   123344567899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHH
Q psy7365         465 ARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  518 (601)
Q Consensus       465 ~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~  518 (601)
                      +++.++++|++++++ |+|||++|||++++..+|||+++|++|+ ++.|+++++.
T Consensus       163 ~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~  216 (253)
T 2nq2_C          163 NQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL  216 (253)
T ss_dssp             HHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence            999999999999877 9999999999999999999999999999 9999998763

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.98  E-value=4.3e-33  Score=286.64  Aligned_cols=202  Identities=18%  Similarity=0.209  Sum_probs=160.4

Q ss_pred             ccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccC--C---cccccccccCC
Q psy7365         311 SLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMK--S---APQKSYIGYCP  378 (601)
Q Consensus       311 ~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~--~---~~~~~~ig~v~  378 (601)
                      .+.++.++   +++++...-++.+++++...   +|++++++       +..|..++.+.+..  .   ...++.+||+|
T Consensus        30 ~y~~~~vL---~~isl~i~~Ge~~~liG~NG---sGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~  103 (279)
T 2ihy_A           30 MKQGKTIL---KKISWQIAKGDKWILYGLNG---AGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVS  103 (279)
T ss_dssp             EETTEEEE---EEEEEEEETTCEEEEECCTT---SSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEEC
T ss_pred             EECCEEEE---EeeeEEEcCCCEEEEECCCC---CcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEE
Confidence            34444554   88999999999999997522   55555443       33445545554442  1   12356799999


Q ss_pred             CCcccC--CCCCHHHHHHHhHH----hcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEE
Q psy7365         379 QFDALN--DRLTPREHLEFYSR----VRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLI  452 (601)
Q Consensus       379 Q~~~l~--~~lTv~E~L~~~~~----~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lL  452 (601)
                      |++.++  +.+||+||+.+...    +++....+..++++++++.++|.+..++++.+|||||||||+||+||+.+|++|
T Consensus       104 Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lL  183 (279)
T 2ihy_A          104 HSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVL  183 (279)
T ss_dssp             HHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred             cCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEE
Confidence            997643  35699999987431    122223344567889999999999999999999999999999999999999999


Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhCCcEE--EEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHH
Q psy7365         453 FLDEPTSGMDPGARRFLWTCIERAVSEGRCV--ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  518 (601)
Q Consensus       453 lLDEPTsGLD~~~~~~i~~lL~~l~~~G~tV--llsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~  518 (601)
                      ||||||+|||+.+++.++++|++++++|+||  |++|||++++..+|||+++|++|++++.|+++++.
T Consensus       184 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  251 (279)
T 2ihy_A          184 ILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL  251 (279)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHC
T ss_pred             EEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence            9999999999999999999999997669999  99999999999999999999999999999998874

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.98  E-value=1.2e-35  Score=330.86  Aligned_cols=314  Identities=16%  Similarity=0.159  Sum_probs=205.9

Q ss_pred             ccceeecceE-Eeec------ccCCCCCCCccccchhhhHHHh--ccCCCCCCeeEEEEccccCCCchHHhcccEEEEcc
Q psy7365          65 DSYGISDTSL-EEQP------LGPSGITLGLHTLGLEFVSRSM--LMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQ  135 (601)
Q Consensus        65 ~~~~~~~~~~-~~~~------~g~~g~~~g~~~~g~~~~~~~~--l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q  135 (601)
                      +..+|+|+|| .+.+      +|||||  |||||     + ++  ++|+++|++|.|+++|.+........++.+|++||
T Consensus        24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGs--GKSTL-----~-~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q   95 (525)
T 1tf7_A           24 MIEGFDDISHGGLPIGRSTLVSGTSGT--GKTLF-----S-IQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLA   95 (525)
T ss_dssp             CCTTHHHHTTSSEETTSEEEEEESTTS--SHHHH-----H-HHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHH
T ss_pred             CchhHHHhcCCCCCCCeEEEEEcCCCC--CHHHH-----H-HHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChH
Confidence            4679999999 8877      999999  56655     4 45  68999999999999998843233345567999999


Q ss_pred             CCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhh
Q psy7365         136 YNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMN  215 (601)
Q Consensus       136 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~  215 (601)
                      ++....+      +.+    ......   .+..++++.+++.+..++.+.+|||||                        
T Consensus        96 ~~~~~~~------l~~----~~~~~~---~~~~~~l~~~~l~~~~~~~~~~LS~g~------------------------  138 (525)
T 1tf7_A           96 KLVDEGK------LFI----LDASPD---PEGQEVVGGFDLSALIERINYAIQKYR------------------------  138 (525)
T ss_dssp             HHHHTTS------EEE----EECCCC---SSCCSCCSSHHHHHHHHHHHHHHHHHT------------------------
T ss_pred             HhhccCc------EEE----EecCcc---cchhhhhcccCHHHHHHHHHHHHHHcC------------------------
Confidence            8642211      100    001000   001112233333333344444444443                        


Q ss_pred             hhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCC-----CC
Q psy7365         216 AANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTS-----GV  290 (601)
Q Consensus       216 ~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPts-----gL  290 (601)
                                                                                    |++++|||||+     +|
T Consensus       139 --------------------------------------------------------------~~~lilDe~t~~~~~~~l  156 (525)
T 1tf7_A          139 --------------------------------------------------------------ARRVSIDSVTSVFQQYDA  156 (525)
T ss_dssp             --------------------------------------------------------------CSEEEEECSTTTSTTTCC
T ss_pred             --------------------------------------------------------------CCEEEECCHHHHHHhcCC
Confidence                                                                          45788999997     56


Q ss_pred             CHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHH---------HhcCCEEEEecC----Cccccc-------cCcc-
Q psy7365         291 DPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA---------DLLGDRIAIIAA----GKLQCC-------GSSV-  349 (601)
Q Consensus       291 D~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~---------~~l~Drv~vL~~----GkIv~~-------G~~~-  349 (601)
                      |+..++.+++++++++     ..|+|||++||+++++         ..+||+|++|.+    |+....       +... 
T Consensus       157 D~~~~~~l~~ll~~l~-----~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~~~G~~~r~l~~~k~r~~~~~  231 (525)
T 1tf7_A          157 SSVVRRELFRLVARLK-----QIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHM  231 (525)
T ss_dssp             HHHHHHHHHHHHHHHH-----HHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEECSTTCCEEEEEEEEETTSCCC
T ss_pred             HHHHHHHHHHHHHHHH-----HCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEccCCceeEEEEEEECCCCCCC
Confidence            9999999999999984     3589999999999984         566999999987    443211       0000 


Q ss_pred             -----c-cccc--------------------ccccc-----ccccccCC-------------------------ccc-cc
Q psy7365         350 -----F-LKNS--------------------FARGY-----YLSLDMKS-------------------------APQ-KS  372 (601)
Q Consensus       350 -----l-Lk~~--------------------~g~g~-----~igld~~~-------------------------~~~-~~  372 (601)
                           + +...                    ...++     .++..+..                         .+. .+
T Consensus       232 ~~~~~~~i~~~gi~v~p~~~~~~~~~~~~~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~  311 (525)
T 1tf7_A          232 KGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKER  311 (525)
T ss_dssp             CSEEEEEEETTEEEECCTTTCCSCCCCCCCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCC
T ss_pred             CceEEEEEcCCCEEEEeccccccccccccceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCC
Confidence                 0 0000                    00000     00000000                         000 01


Q ss_pred             ccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEE
Q psy7365         373 YIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLI  452 (601)
Q Consensus       373 ~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lL  452 (601)
                      .+.|++|++       ..+ +.-.....++.       .++ +...|+....+.++.+|||||+||+.+|+++..+|+++
T Consensus       312 vi~~~~ee~-------~~~-l~~~~~~~g~~-------~~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~ll  375 (525)
T 1tf7_A          312 AILFAYEES-------RAQ-LLRNAYSWGMD-------FEE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARI  375 (525)
T ss_dssp             EEEEESSSC-------HHH-HHHHHHTTSCC-------HHH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred             EEEEEEeCC-------HHH-HHHHHHHcCCC-------HHH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEE
Confidence            123334432       111 11111112322       112 23456667778899999999999999999999999999


Q ss_pred             EEECCCCCCCHH-----HHHHHHHHHHHHHhCCcEEEEEccCh----------hHHHhhCCEEEEEeCCE
Q psy7365         453 FLDEPTSGMDPG-----ARRFLWTCIERAVSEGRCVILTSHNM----------EECEALCTKLTIMVNGQ  507 (601)
Q Consensus       453 lLDEPTsGLD~~-----~~~~i~~lL~~l~~~G~tVllsTHdl----------~e~~~l~drv~iL~~G~  507 (601)
                      |+| ||+|||+.     .++.++++++.+++.|.|||++||+.          ++++.+||+|++|++|+
T Consensus       376 ilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          376 AID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE  444 (525)
T ss_dssp             EEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred             EEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence            999 99999999     99999999999988899999999999          88899999999999887

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.98  E-value=1.2e-32  Score=335.29  Aligned_cols=208  Identities=23%  Similarity=0.338  Sum_probs=168.2

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++||++.|.. ..+.++|+|+||++++      +|||||  |||||      .++|.|++.|++|+|++||.|+.+ +
T Consensus      1077 I~f~nVsf~Y~~-~~~~~VL~~isl~I~~Ge~vaIVG~SGs--GKSTL------~~lL~rl~~p~~G~I~iDG~di~~i~ 1147 (1321)
T 4f4c_A         1077 VIFKNVRFAYPE-RPEIEILKGLSFSVEPGQTLALVGPSGC--GKSTV------VALLERFYDTLGGEIFIDGSEIKTLN 1147 (1321)
T ss_dssp             EEEEEEEECCTT-SCSSCSEEEEEEEECTTCEEEEECSTTS--STTSH------HHHHTTSSCCSSSEEEETTEETTTBC
T ss_pred             EEEEEEEEeCCC-CCCCccccceeEEECCCCEEEEECCCCC--hHHHH------HHHHhcCccCCCCEEEECCEEhhhCC
Confidence            559999999742 2345799999999998      999999  67776      579999999999999999999976 5


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCccccCChHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPH-----------KRTSLANTLSGGM  191 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgG~  191 (601)
                      ...+|+++|+|||+|.+|. -|++||+.|+......+.    +++.++++..++.+           .......+|||||
T Consensus      1148 ~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gld~~~~sd----~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQ 1222 (1321)
T 4f4c_A         1148 PEHTRSQIAIVSQEPTLFD-CSIAENIIYGLDPSSVTM----AQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQ 1222 (1321)
T ss_dssp             HHHHHTTEEEECSSCCCCS-EEHHHHHSSSSCTTTSCH----HHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHH
T ss_pred             HHHHHhheEEECCCCEeeC-ccHHHHHhccCCCCCCCH----HHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHH
Confidence            6788999999999999995 499999987643333333    34555666666432           2233446799999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||++||||++.|                                                                   
T Consensus      1223 rQriaiARAllr~------------------------------------------------------------------- 1235 (1321)
T 4f4c_A         1223 KQRIAIARALVRN------------------------------------------------------------------- 1235 (1321)
T ss_dssp             HHHHHHHHHHHSC-------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhC-------------------------------------------------------------------
Confidence            9999866544333                                                                   


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  351 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL  351 (601)
                            |++||||||||+||+.+...+.+.|+++      .+|+|+|+++|+++.+. .||||++|++|+|+..|++..+
T Consensus      1236 ------~~ILiLDEaTSaLD~~tE~~Iq~~l~~~------~~~~TvI~IAHRLsTi~-~aD~I~Vld~G~IvE~Gth~eL 1302 (1321)
T 4f4c_A         1236 ------PKILLLDEATSALDTESEKVVQEALDRA------REGRTCIVIAHRLNTVM-NADCIAVVSNGTIIEKGTHTQL 1302 (1321)
T ss_dssp             ------CSEEEEESCCCSTTSHHHHHHHHHHTTT------SSSSEEEEECSSSSTTT-TCSEEEEESSSSEEEEECHHHH
T ss_pred             ------CCEEEEeCccccCCHHHHHHHHHHHHHH------cCCCEEEEeccCHHHHH-hCCEEEEEECCEEEEECCHHHH
Confidence                  4899999999999999999999999875      36899999999998876 6999999999999999987544

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.97  E-value=6.9e-32  Score=273.29  Aligned_cols=200  Identities=16%  Similarity=0.173  Sum_probs=155.0

Q ss_pred             cCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc---------cccccccccccccCCcc----cccccccCC
Q psy7365         312 LSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK---------NSFARGYYLSLDMKSAP----QKSYIGYCP  378 (601)
Q Consensus       312 ~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk---------~~~g~g~~igld~~~~~----~~~~ig~v~  378 (601)
                      +.++.++   +++++...-++.+++++...   +|++++++         +..|..++.+.+.....    .+..++|+|
T Consensus        13 y~~~~vl---~~vsl~i~~Ge~~~l~G~nG---sGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~   86 (250)
T 2d2e_A           13 IDGETIL---KGVNLVVPKGEVHALMGPNG---AGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAF   86 (250)
T ss_dssp             ETTEEEE---EEEEEEEETTCEEEEECSTT---SSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCC
T ss_pred             ECCEEEE---eceEEEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEec
Confidence            3344554   88999999999999997522   45554432         23344444444432211    134589999


Q ss_pred             CCcccCCCCCHHHHHHHhHH-hcC--CChhHHHHHHHHHHHHcCC-CcccccccCc-CChHHHHHHHHHHHHhCCCCEEE
Q psy7365         379 QFDALNDRLTPREHLEFYSR-VRN--LPSVLLNTIVNESLNKFAL-GHYSDREVRT-LSGGNKRKLSTAIALLGNTPLIF  453 (601)
Q Consensus       379 Q~~~l~~~lTv~E~L~~~~~-~~g--~~~~~~~~~~~~lLe~~~L-~~~~~~~~~~-LSgGqkQRl~lA~AL~~~P~lLl  453 (601)
                      |++.+++.+||+||+.+... ..+  .+..+..+++.++++.++| .+..++++.+ |||||||||+||+||+++|++||
T Consensus        87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lll  166 (250)
T 2d2e_A           87 QYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAV  166 (250)
T ss_dssp             CCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEE
T ss_pred             cCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEE
Confidence            99999999999999988643 223  2233445678899999999 5788999999 99999999999999999999999


Q ss_pred             EECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhh-CCEEEEEeCCEEEEecCHHHH
Q psy7365         454 LDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEAL-CTKLTIMVNGQFTCLGSATHL  517 (601)
Q Consensus       454 LDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l-~drv~iL~~G~iv~~G~~~~L  517 (601)
                      |||||+|||+.+++.++++|++++++|+|||++|||++++..+ |||+++|++|++++.|+++..
T Consensus       167 LDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  231 (250)
T 2d2e_A          167 LDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELA  231 (250)
T ss_dssp             EECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHHH
T ss_pred             EeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHHH
Confidence            9999999999999999999999976799999999999999998 599999999999999998843

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.97  E-value=2.3e-32  Score=276.74  Aligned_cols=188  Identities=16%  Similarity=0.245  Sum_probs=157.0

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCC---cccccccccCCCCcccCCCCCHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKS---APQKSYIGYCPQFDALNDRLTPRE  391 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~---~~~~~~ig~v~Q~~~l~~~lTv~E  391 (601)
                      +++++...-++.+++++...   .|+++++       ++. |..++.+.+...   ...++++||+||++.+++.+||+|
T Consensus        17 ~~vsl~i~~Ge~~~liG~NG---sGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e   92 (249)
T 2qi9_C           17 GPLSGEVRAGEILHLVGPNG---AGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWH   92 (249)
T ss_dssp             EEEEEEEETTCEEEEECCTT---SSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHH
T ss_pred             eeeEEEEcCCCEEEEECCCC---CcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHH
Confidence            67788888889999997522   5555543       344 555554544322   123567999999999999999999


Q ss_pred             HHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCC-------EEEEECCCCCCCHH
Q psy7365         392 HLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP-------LIFLDEPTSGMDPG  464 (601)
Q Consensus       392 ~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~-------lLlLDEPTsGLD~~  464 (601)
                      |+.+.. ..+..    +++++++++.++|.+..++++.+||||||||++||+||+.+|+       +|||||||+|||+.
T Consensus        93 ~l~~~~-~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~  167 (249)
T 2qi9_C           93 YLTLHQ-HDKTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA  167 (249)
T ss_dssp             HHHTTC-SSTTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHH
T ss_pred             HHHHhh-ccCCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHH
Confidence            998752 11211    4568899999999999999999999999999999999999999       99999999999999


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHH
Q psy7365         465 ARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  518 (601)
Q Consensus       465 ~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~  518 (601)
                      +++.++++|+++.++|+|||++|||+++++.+|||+++|++|++++.|+++++.
T Consensus       168 ~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  221 (249)
T 2qi9_C          168 QQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL  221 (249)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            999999999999777999999999999999999999999999999999998874

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.97  E-value=8.8e-32  Score=303.93  Aligned_cols=198  Identities=19%  Similarity=0.255  Sum_probs=160.1

Q ss_pred             cchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccC
Q psy7365          46 GAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI  119 (601)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~  119 (601)
                      +..+..++++++.|++.     .++++||++.+      +|||||  |||||      .++|+|+++|++|+|.+     
T Consensus       354 ~~~~l~~~~l~~~~~~~-----~l~~~~~~v~~Gei~~i~G~NGs--GKSTL------lk~l~Gl~~p~~G~I~~-----  415 (607)
T 3bk7_A          354 RETLVEYPRLVKDYGSF-----KLEVEPGEIRKGEVIGIVGPNGI--GKTTF------VKMLAGVEEPTEGKVEW-----  415 (607)
T ss_dssp             CCEEEEECCEEEECSSC-----EEEECCEEEETTCEEEEECCTTS--SHHHH------HHHHHTSSCCSBSCCCC-----
T ss_pred             CceEEEEeceEEEecce-----EEEecccccCCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCceEEEE-----
Confidence            34456689999998642     58888998877      999999  56655      57999999999999976     


Q ss_pred             CCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365         120 RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK  199 (601)
Q Consensus       120 ~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~  199 (601)
                             +..+||+||++.+++.+||.|++.+.... ..   ...+++.++++.+|+.+..++++.+|||||||||+|||
T Consensus       416 -------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~-~~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAr  484 (607)
T 3bk7_A          416 -------DLTVAYKPQYIKAEYEGTVYELLSKIDSS-KL---NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAA  484 (607)
T ss_dssp             -------CCCEEEECSSCCCCCSSBHHHHHHHHHHH-HH---HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHH
T ss_pred             -------eeEEEEEecCccCCCCCcHHHHHHhhhcc-CC---CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence                   24699999999888889999988764110 00   11356788999999999999999999999999998544


Q ss_pred             hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365         200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS  279 (601)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  279 (601)
                      ||                                      +.+                                   |+
T Consensus       485 aL--------------------------------------~~~-----------------------------------p~  491 (607)
T 3bk7_A          485 TL--------------------------------------LRD-----------------------------------AD  491 (607)
T ss_dssp             HH--------------------------------------TSC-----------------------------------CS
T ss_pred             HH--------------------------------------HhC-----------------------------------CC
Confidence            32                                      232                                   58


Q ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecC--CccccccCcc
Q psy7365         280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA--GKLQCCGSSV  349 (601)
Q Consensus       280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~--GkIv~~G~~~  349 (601)
                      +|||||||+|||+.++..++++|+++.    +..|+|||++|||++++..+|||+++|.+  |++...+++.
T Consensus       492 lLlLDEPt~~LD~~~~~~l~~~l~~l~----~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~  559 (607)
T 3bk7_A          492 IYLLDEPSAYLDVEQRLAVSRAIRHLM----EKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPM  559 (607)
T ss_dssp             EEEEECTTTTCCHHHHHHHHHHHHHHH----HHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred             EEEEeCCccCCCHHHHHHHHHHHHHHH----HhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHH
Confidence            999999999999999999999999873    23589999999999999999999999975  6655566553

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.97  E-value=1.1e-31  Score=274.56  Aligned_cols=203  Identities=17%  Similarity=0.195  Sum_probs=160.8

Q ss_pred             ccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc---------cccccccccccccCCcc----cccccccC
Q psy7365         311 SLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK---------NSFARGYYLSLDMKSAP----QKSYIGYC  377 (601)
Q Consensus       311 ~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk---------~~~g~g~~igld~~~~~----~~~~ig~v  377 (601)
                      .+.+++++   +++++...-++.+++++...   +|++++++         +..|+.++.+.+.....    .++.+||+
T Consensus        29 ~y~~~~vl---~~vsl~i~~Ge~~~l~G~NG---sGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v  102 (267)
T 2zu0_C           29 SVEDKAIL---RGLSLDVHPGEVHAIMGPNG---SGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMA  102 (267)
T ss_dssp             EETTEEEE---EEEEEEECTTCEEEEECCTT---SSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEE
T ss_pred             EECCEEEE---EeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEE
Confidence            34445555   89999999999999997522   55555432         22344444444432211    13458999


Q ss_pred             CCCcccCCCCCHHHHHHHhHH-h---cC---CChhHHHHHHHHHHHHcCCC-cccccccC-cCChHHHHHHHHHHHHhCC
Q psy7365         378 PQFDALNDRLTPREHLEFYSR-V---RN---LPSVLLNTIVNESLNKFALG-HYSDREVR-TLSGGNKRKLSTAIALLGN  448 (601)
Q Consensus       378 ~Q~~~l~~~lTv~E~L~~~~~-~---~g---~~~~~~~~~~~~lLe~~~L~-~~~~~~~~-~LSgGqkQRl~lA~AL~~~  448 (601)
                      ||++.+++.+|+.||+.+... .   ++   .+..+..++++++++.++|. +..++++. +|||||||||+||+||+.+
T Consensus       103 ~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~  182 (267)
T 2zu0_C          103 FQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLE  182 (267)
T ss_dssp             CSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHC
T ss_pred             ccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhC
Confidence            999999999999999987431 1   22   23334456788999999996 57889987 5999999999999999999


Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhh-CCEEEEEeCCEEEEecCHHHHHH
Q psy7365         449 TPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEAL-CTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       449 P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l-~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      |++|||||||+|||+.+++.++++|++++++|+|||++|||++++..+ |||+++|++|++++.|+++++..
T Consensus       183 p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  254 (267)
T 2zu0_C          183 PELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQ  254 (267)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHHH
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHhh
Confidence            999999999999999999999999999876799999999999999987 99999999999999999988754

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.97  E-value=3.2e-32  Score=330.85  Aligned_cols=207  Identities=23%  Similarity=0.316  Sum_probs=163.7

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++||++.|++. .+.++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. +
T Consensus      1031 i~~~~v~~~y~~~-~~~~~l~~vsl~i~~Ge~v~ivG~sGs--GKSTl------~~~l~g~~~p~~G~I~i~g~~i~~~~ 1101 (1284)
T 3g5u_A         1031 VQFSGVVFNYPTR-PSIPVLQGLSLEVKKGQTLALVGSSGC--GKSTV------VQLLERFYDPMAGSVFLDGKEIKQLN 1101 (1284)
T ss_dssp             EEEEEEEBCCSCG-GGCCSBSSCCEEECSSSEEEEECSSST--THHHH------HHHHTTSSCCSEEEEESSSSCTTSSC
T ss_pred             EEEEEEEEECCCC-CCCeeecceeEEEcCCCEEEEECCCCC--CHHHH------HHHHhcCcCCCCCEEEECCEEcccCC
Confidence            4599999998532 134699999999988      999999  56654      579999999999999999999975 4


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCccccCChHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHK-----------RTSLANTLSGGM  191 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~  191 (601)
                      ...+|+++|||||+|.+| ..||+||+.++......+.++    +.++++..++.+.           ......+|||||
T Consensus      1102 ~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~~~~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq 1176 (1284)
T 3g5u_A         1102 VQWLRAQLGIVSQEPILF-DCSIAENIAYGDNSRVVSYEE----IVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQ 1176 (1284)
T ss_dssp             HHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSSCCCCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHH
T ss_pred             HHHHHhceEEECCCCccc-cccHHHHHhccCCCCCCCHHH----HHHHHHHhCcHHHHHhCccccccccCCCCCccCHHH
Confidence            566788999999999877 579999998765433334333    3334444443322           334457899999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||+++|||++                                      .+                             
T Consensus      1177 ~Qrv~iARal~--------------------------------------~~----------------------------- 1189 (1284)
T 3g5u_A         1177 KQRIAIARALV--------------------------------------RQ----------------------------- 1189 (1284)
T ss_dssp             HHHHHHHHHHH--------------------------------------HC-----------------------------
T ss_pred             HHHHHHHHHHH--------------------------------------cC-----------------------------
Confidence            99998665433                                      33                             


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                            |++|||||||+|||+.+.+.+++.|+++      ..|+|+|++|||++++. .||||++|++|+++..|++..
T Consensus      1190 ------p~iLiLDEpTs~lD~~~~~~i~~~l~~~------~~~~tvi~isH~l~~i~-~~dri~vl~~G~i~~~g~~~~ 1255 (1284)
T 3g5u_A         1190 ------PHILLLDEATSALDTESEKVVQEALDKA------REGRTCIVIAHRLSTIQ-NADLIVVIQNGKVKEHGTHQQ 1255 (1284)
T ss_dssp             ------CSSEEEESCSSSCCHHHHHHHHHHHHHH------SSSSCEEEECSCTTGGG-SCSEEEEEETBEEEEEECHHH
T ss_pred             ------CCEEEEeCCcccCCHHHHHHHHHHHHHh------CCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHH
Confidence                  5899999999999999999999999875      35899999999999985 599999999999998886543

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.97  E-value=7.3e-32  Score=300.75  Aligned_cols=191  Identities=20%  Similarity=0.219  Sum_probs=155.9

Q ss_pred             cchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccC
Q psy7365          46 GAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI  119 (601)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~  119 (601)
                      +..+..++++++.|++     ..+++.||++.+      +|||||  |||||      .++|+|+++|++|+|.++|   
T Consensus       266 ~~~~l~~~~l~~~~~~-----~~l~~~~~~i~~Gei~~i~G~nGs--GKSTL------l~~l~Gl~~p~~G~i~~~~---  329 (538)
T 3ozx_A          266 LKTKMKWTKIIKKLGD-----FQLVVDNGEAKEGEIIGILGPNGI--GKTTF------ARILVGEITADEGSVTPEK---  329 (538)
T ss_dssp             CCEEEEECCEEEEETT-----EEEEECCEEEETTCEEEEECCTTS--SHHHH------HHHHTTSSCCSBCCEESSC---
T ss_pred             ccceEEEcceEEEECC-----EEEEeccceECCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCcEEEECC---
Confidence            3445668999998865     247777888877      999999  56655      5799999999999998764   


Q ss_pred             CCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365         120 RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK  199 (601)
Q Consensus       120 ~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~  199 (601)
                              ..++|+||++..++..||.||+.+..... ...  ..+.++++++.+|+.+..++++.+|||||||||+|||
T Consensus       330 --------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAr  398 (538)
T 3ozx_A          330 --------QILSYKPQRIFPNYDGTVQQYLENASKDA-LST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAA  398 (538)
T ss_dssp             --------CCEEEECSSCCCCCSSBHHHHHHHHCSST-TCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHH
T ss_pred             --------eeeEeechhcccccCCCHHHHHHHhhhhc-cch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHH
Confidence                    35899999987777899999998743211 111  1345788999999999999999999999999998654


Q ss_pred             hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365         200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS  279 (601)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  279 (601)
                      ||                                      +.+                                   |+
T Consensus       399 aL--------------------------------------~~~-----------------------------------p~  405 (538)
T 3ozx_A          399 TL--------------------------------------AKE-----------------------------------AD  405 (538)
T ss_dssp             HH--------------------------------------HSC-----------------------------------CS
T ss_pred             HH--------------------------------------HcC-----------------------------------CC
Confidence            32                                      233                                   58


Q ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCC
Q psy7365         280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG  340 (601)
Q Consensus       280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~G  340 (601)
                      +|||||||+|||+.++..++++|+++.    +..|+|||++|||++++..+||||++|.++
T Consensus       406 lLlLDEPT~gLD~~~~~~i~~~l~~l~----~~~g~tvi~vsHdl~~~~~~aDri~vl~~~  462 (538)
T 3ozx_A          406 LYVLDQPSSYLDVEERYIVAKAIKRVT----RERKAVTFIIDHDLSIHDYIADRIIVFKGE  462 (538)
T ss_dssp             EEEEESTTTTCCHHHHHHHHHHHHHHH----HHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred             EEEEeCCccCCCHHHHHHHHHHHHHHH----HhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence            999999999999999999999999984    235899999999999999999999999753

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.97  E-value=8.3e-32  Score=300.59  Aligned_cols=198  Identities=20%  Similarity=0.273  Sum_probs=159.2

Q ss_pred             cchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccC
Q psy7365          46 GAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI  119 (601)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~  119 (601)
                      +..+..+++|++.|++     ..++++||++.+      +|||||  |||||      .++|+|+++|++|+|.+     
T Consensus       284 ~~~~l~~~~l~~~~~~-----~~l~~~~~~i~~Ge~~~i~G~NGs--GKSTL------lk~l~Gl~~p~~G~i~~-----  345 (538)
T 1yqt_A          284 RETLVTYPRLVKDYGS-----FRLEVEPGEIKKGEVIGIVGPNGI--GKTTF------VKMLAGVEEPTEGKIEW-----  345 (538)
T ss_dssp             CCEEEEECCEEEEETT-----EEEEECCEEEETTCEEEEECCTTS--SHHHH------HHHHHTSSCCSBCCCCC-----
T ss_pred             CCeEEEEeeEEEEECC-----EEEEeCccccCCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCCeEEEE-----
Confidence            3455668999998754     258888998877      999999  56655      57999999999999975     


Q ss_pred             CCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365         120 RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK  199 (601)
Q Consensus       120 ~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~  199 (601)
                             ...+||+||++..++.+||.|++.+.... +..   ..+++.++++.+|+.+..++++.+|||||||||+|||
T Consensus       346 -------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAr  414 (538)
T 1yqt_A          346 -------DLTVAYKPQYIKADYEGTVYELLSKIDAS-KLN---SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAA  414 (538)
T ss_dssp             -------CCCEEEECSSCCCCCSSBHHHHHHHHHHH-HHT---CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHH
T ss_pred             -------CceEEEEecCCcCCCCCcHHHHHHhhhcc-CCC---HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHH
Confidence                   23699999999877889999888654111 111   1345788999999999999999999999999997544


Q ss_pred             hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365         200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS  279 (601)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  279 (601)
                      ++                                      +.+                                   |+
T Consensus       415 aL--------------------------------------~~~-----------------------------------p~  421 (538)
T 1yqt_A          415 TL--------------------------------------LRD-----------------------------------AD  421 (538)
T ss_dssp             HH--------------------------------------TSC-----------------------------------CS
T ss_pred             HH--------------------------------------HhC-----------------------------------CC
Confidence            32                                      232                                   58


Q ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecC--CccccccCcc
Q psy7365         280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA--GKLQCCGSSV  349 (601)
Q Consensus       280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~--GkIv~~G~~~  349 (601)
                      +|||||||+|||+.++..++++|+++.    +..|.|||++|||++++..+|||+++|.+  |++...+++.
T Consensus       422 lLlLDEPt~~LD~~~~~~i~~~l~~l~----~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~  489 (538)
T 1yqt_A          422 IYLLDEPSAYLDVEQRLAVSRAIRHLM----EKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPM  489 (538)
T ss_dssp             EEEEECTTTTCCHHHHHHHHHHHHHHH----HHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHH----HhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHH
Confidence            999999999999999999999999873    12489999999999999999999999985  6665566553

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.97  E-value=5.3e-31  Score=268.85  Aligned_cols=185  Identities=18%  Similarity=0.260  Sum_probs=153.0

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc------cccccccccccccCCcccccccc-cCCCCcccCCCCCHHHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK------NSFARGYYLSLDMKSAPQKSYIG-YCPQFDALNDRLTPREHLE  394 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk------~~~g~g~~igld~~~~~~~~~ig-~v~Q~~~l~~~lTv~E~L~  394 (601)
                      +++++... ++.+++++...   +|++++++      +..|+.++.+.+......++++| |+||++.+  .+|++||+.
T Consensus        22 ~~vsl~i~-Ge~~~i~G~NG---sGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~   95 (263)
T 2pjz_A           22 ENINLEVN-GEKVIILGPNG---SGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVY   95 (263)
T ss_dssp             EEEEEEEC-SSEEEEECCTT---SSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHHHH
T ss_pred             EeeeEEEC-CEEEEEECCCC---CCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHHHHH
Confidence            88999999 99999997522   45554432      33344433343332111256799 99999877  899999999


Q ss_pred             HhHHhcCCChhHHHHHHHHHHHHcCCC-cccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHH
Q psy7365         395 FYSRVRNLPSVLLNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCI  473 (601)
Q Consensus       395 ~~~~~~g~~~~~~~~~~~~lLe~~~L~-~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL  473 (601)
                      ++..++..    ..++++++++.++|. +..++++.+||||||||++||+||+++|++|||||||+|||+.+++.++++|
T Consensus        96 ~~~~~~~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L  171 (263)
T 2pjz_A           96 LYEELKGL----DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYI  171 (263)
T ss_dssp             HHHHHTCC----CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred             Hhhhhcch----HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHH
Confidence            87654422    235688999999999 8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCcEEEEEccChhHHHhhCC-EEEEEeCCEEEEecCHHHHHH
Q psy7365         474 ERAVSEGRCVILTSHNMEECEALCT-KLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       474 ~~l~~~G~tVllsTHdl~e~~~l~d-rv~iL~~G~iv~~G~~~~L~~  519 (601)
                      +++++   |||++|||++++..+|| |+++|++|++++.|+++++.+
T Consensus       172 ~~~~~---tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~  215 (263)
T 2pjz_A          172 KEYGK---EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE  215 (263)
T ss_dssp             HHSCS---EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred             HHhcC---cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence            98743   99999999999999999 999999999999999999874

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.97  E-value=3.5e-31  Score=271.30  Aligned_cols=197  Identities=16%  Similarity=0.180  Sum_probs=155.0

Q ss_pred             cEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC---cccccccccCCCCcccC
Q psy7365         315 RTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS---APQKSYIGYCPQFDALN  384 (601)
Q Consensus       315 ~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~---~~~~~~ig~v~Q~~~l~  384 (601)
                      +.++   +++++...-++.+++++...   +|++++++       +..|..++.+.++..   ...++.|||+||++.++
T Consensus        32 ~~vl---~~vsl~i~~Ge~~~i~G~nG---sGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~  105 (271)
T 2ixe_A           32 VQVL---QGLTFTLYPGKVTALVGPNG---SGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLF  105 (271)
T ss_dssp             SCCE---EEEEEEECTTCEEEEECSTT---SSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCC
T ss_pred             ceee---EeeEEEECCCCEEEEECCCC---CCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccc
Confidence            4555   88888889999999997522   55555433       334444444444322   12356799999999888


Q ss_pred             CCCCHHHHHHHhHHhcCCChhHH-----HHHHHHHHHHc--CCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECC
Q psy7365         385 DRLTPREHLEFYSRVRNLPSVLL-----NTIVNESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEP  457 (601)
Q Consensus       385 ~~lTv~E~L~~~~~~~g~~~~~~-----~~~~~~lLe~~--~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEP  457 (601)
                      + .||+||+.++..... .....     ...+.++++.+  ++....++++.+|||||||||+|||||+.+|++||||||
T Consensus       106 ~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEP  183 (271)
T 2ixe_A          106 G-RSFRENIAYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNA  183 (271)
T ss_dssp             S-SBHHHHHHTTCSSCC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred             c-ccHHHHHhhhcccCC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence            7 599999987532211 10111     12346678888  788888999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         458 TSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       458 TsGLD~~~~~~i~~lL~~l~~-~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      |+|||+.+++.++++|+++.+ +|+|||++|||++++.. ||||++|++|++++.|+++++...
T Consensus       184 ts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~  246 (271)
T 2ixe_A          184 TSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQGTHLQLMER  246 (271)
T ss_dssp             TTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEEECHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence            999999999999999999864 49999999999999975 999999999999999999998754

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.97  E-value=6.7e-31  Score=265.66  Aligned_cols=192  Identities=18%  Similarity=0.280  Sum_probs=150.5

Q ss_pred             CcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc---ccccccccCCCCccc
Q psy7365         314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA---PQKSYIGYCPQFDAL  383 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~---~~~~~ig~v~Q~~~l  383 (601)
                      ++.++   +++++...-++.+++++...   +|++++++       +..|..++.+.+....   ..++.|||+||++.+
T Consensus        21 ~~~vl---~~vsl~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l   94 (247)
T 2ff7_A           21 SPVIL---DNINLSIKQGEVIGIVGRSG---SGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVL   94 (247)
T ss_dssp             SCEEE---EEEEEEEETTCEEEEECSTT---SSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCC
T ss_pred             Cccee---eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcc
Confidence            35555   88999999999999998522   55555433       3344444555444321   235679999999988


Q ss_pred             CCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCccc-----------ccccCcCChHHHHHHHHHHHHhCCCCEE
Q psy7365         384 NDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYS-----------DREVRTLSGGNKRKLSTAIALLGNTPLI  452 (601)
Q Consensus       384 ~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~-----------~~~~~~LSgGqkQRl~lA~AL~~~P~lL  452 (601)
                      |+ .||+||+.++..  ...    .+++.++++.+++.+..           ++++.+|||||||||+|||||+.+|++|
T Consensus        95 ~~-~tv~enl~~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ll  167 (247)
T 2ff7_A           95 LN-RSIIDNISLANP--GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKIL  167 (247)
T ss_dssp             TT-SBHHHHHTTTCT--TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEE
T ss_pred             cc-ccHHHHHhccCC--CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            86 699999987521  111    23456677777765443           4456899999999999999999999999


Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         453 FLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       453 lLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      ||||||+|||+.+++.++++|+++. +|+|||++|||+++++. |||+++|++|++++.|+++++...
T Consensus       168 lLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~  233 (247)
T 2ff7_A          168 IFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE  233 (247)
T ss_dssp             EECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGTT-SSEEEEEETTEEEEEECHHHHHTS
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence            9999999999999999999999984 69999999999999875 999999999999999999998653

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.96  E-value=9.8e-31  Score=263.68  Aligned_cols=193  Identities=19%  Similarity=0.267  Sum_probs=152.4

Q ss_pred             CcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC---cccccccccCCCCccc
Q psy7365         314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS---APQKSYIGYCPQFDAL  383 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~---~~~~~~ig~v~Q~~~l  383 (601)
                      +.+++   +++++...-++.+++++...   +|++++++       +..|...+.+.+...   ...++.+||+||++.+
T Consensus        14 ~~~vl---~~vsl~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l   87 (243)
T 1mv5_A           14 SEQIL---RDISFEAQPNSIIAFAGPSG---GGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAI   87 (243)
T ss_dssp             SSCSE---EEEEEEECTTEEEEEECCTT---SSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCC
T ss_pred             CCceE---EEeEEEEcCCCEEEEECCCC---CCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcc
Confidence            34555   88888888999999997522   55555433       334444444444322   2346779999999988


Q ss_pred             CCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCccccc-----------ccCcCChHHHHHHHHHHHHhCCCCEE
Q psy7365         384 NDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDR-----------EVRTLSGGNKRKLSTAIALLGNTPLI  452 (601)
Q Consensus       384 ~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~-----------~~~~LSgGqkQRl~lA~AL~~~P~lL  452 (601)
                      |+ .||+||+.++.. ....    .+++.++++.+++.+..++           ++.+|||||||||+|||||+++|++|
T Consensus        88 ~~-~tv~enl~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ll  161 (243)
T 1mv5_A           88 MA-GTIRENLTYGLE-GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKIL  161 (243)
T ss_dssp             CC-EEHHHHTTSCTT-SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred             cc-ccHHHHHhhhcc-CCCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEE
Confidence            87 599999987421 1111    2456788888888766544           46799999999999999999999999


Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         453 FLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       453 lLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      ||||||+|||+.+++.+++.|+++. +|+|||++|||++++. .|||+++|++|+++..|+++++.+.
T Consensus       162 lLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~  227 (243)
T 1mv5_A          162 MLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVAT  227 (243)
T ss_dssp             EEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHHHHH
T ss_pred             EEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCHHHHHhc
Confidence            9999999999999999999999987 6999999999999986 5999999999999999999998653

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.96  E-value=4.2e-30  Score=267.46  Aligned_cols=192  Identities=20%  Similarity=0.290  Sum_probs=150.4

Q ss_pred             CcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc---ccccccccCCCCccc
Q psy7365         314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA---PQKSYIGYCPQFDAL  383 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~---~~~~~ig~v~Q~~~l  383 (601)
                      +..++   +++++...-++.+++++...   +|++++++       +..|..++.+.++...   ..++.||||||++.+
T Consensus        66 ~~~vL---~~isl~i~~Ge~vaivG~sG---sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~l  139 (306)
T 3nh6_A           66 GRETL---QDVSFTVMPGQTLALVGPSG---AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVL  139 (306)
T ss_dssp             TCEEE---EEEEEEECTTCEEEEESSSC---HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCC
T ss_pred             CCcee---eeeeEEEcCCCEEEEECCCC---chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCcc
Confidence            45555   88999999999999998532   56655432       3345555555554432   246789999999988


Q ss_pred             CCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCC-----------cccccccCcCChHHHHHHHHHHHHhCCCCEE
Q psy7365         384 NDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG-----------HYSDREVRTLSGGNKRKLSTAIALLGNTPLI  452 (601)
Q Consensus       384 ~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~-----------~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lL  452 (601)
                      |+ .||+||+.|.....  ..    +++.++++.+++.           ...++...+||||||||++|||||+.+|++|
T Consensus       140 f~-~Tv~eNi~~~~~~~--~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iL  212 (306)
T 3nh6_A          140 FN-DTIADNIRYGRVTA--GN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGII  212 (306)
T ss_dssp             CS-EEHHHHHHTTSTTC--CH----HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred             Cc-ccHHHHHHhhcccC--CH----HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEE
Confidence            85 59999998753221  11    2344445544443           3445566899999999999999999999999


Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         453 FLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       453 lLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      ||||||+|||+.++..+++.|+++. +++|+|++||+++.+.. ||||++|++|+|++.|+++++.+.
T Consensus       213 lLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~el~~~  278 (306)
T 3nh6_A          213 LLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGRHEALLSR  278 (306)
T ss_dssp             EEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHHHHHT-CSEEEEEETTEEEEEECHHHHHHH
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHHhc
Confidence            9999999999999999999999985 47999999999999987 999999999999999999999865

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.96  E-value=4.4e-31  Score=261.58  Aligned_cols=174  Identities=17%  Similarity=0.213  Sum_probs=144.8

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcccccccccCCCCcccCCCCCHHHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLE  394 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~~~~~ig~v~Q~~~l~~~lTv~E~L~  394 (601)
                      +++++...-++.+++++...   +|++++++       +..|..++.+.+..  ..++.+||+||++.+++.+||+||+.
T Consensus        26 ~~vsl~i~~Ge~~~iiG~NG---sGKSTLlk~l~Gl~~p~~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~enl~  100 (214)
T 1sgw_A           26 ERITMTIEKGNVVNFHGPNG---IGKTTLLKTISTYLKPLKGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVEDYLK  100 (214)
T ss_dssp             EEEEEEEETTCCEEEECCTT---SSHHHHHHHHTTSSCCSEEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHHHHH
T ss_pred             eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhcCCCCCCeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHHHHH
Confidence            88888888999999997422   55555443       33344444444433  34677999999999999999999999


Q ss_pred             HhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q psy7365         395 FYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE  474 (601)
Q Consensus       395 ~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~  474 (601)
                      ++...++. ..+ .++++++++.++|.+. ++++.+||||||||++||+||+.+|++|||||||+|||+.+++.++++|+
T Consensus       101 ~~~~~~~~-~~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~  177 (214)
T 1sgw_A          101 AVASLYGV-KVN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSIL  177 (214)
T ss_dssp             HHHHHTTC-CCC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHH
T ss_pred             HHHHhcCC-chH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence            87665543 222 4678899999999988 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCcEEEEEccChhHHHhhCCEEEEE
Q psy7365         475 RAVSEGRCVILTSHNMEECEALCTKLTIM  503 (601)
Q Consensus       475 ~l~~~G~tVllsTHdl~e~~~l~drv~iL  503 (601)
                      +++++|+|||++|||+++++.+|||++++
T Consensus       178 ~~~~~g~tiiivtHd~~~~~~~~d~v~~~  206 (214)
T 1sgw_A          178 EILKEKGIVIISSREELSYCDVNENLHKY  206 (214)
T ss_dssp             HHHHHHSEEEEEESSCCTTSSEEEEGGGG
T ss_pred             HHHhCCCEEEEEeCCHHHHHHhCCEEEEe
Confidence            99767899999999999999999998754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.6e-30  Score=289.63  Aligned_cols=195  Identities=19%  Similarity=0.164  Sum_probs=153.2

Q ss_pred             cccccccccCCCccceeecceEEeec-----------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC
Q psy7365          53 ESLSENRDKLGIDSYGISDTSLEEQP-----------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT  121 (601)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~  121 (601)
                      +++++.|..   ...+++|+||++.+           +|||||  |||||      .++|+|+++|++|+.      +. 
T Consensus       350 ~~~~~~y~~---~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGs--GKSTL------lk~l~Gl~~p~~G~~------~~-  411 (608)
T 3j16_B          350 ASRAFSYPS---LKKTQGDFVLNVEEGEFSDSEILVMMGENGT--GKTTL------IKLLAGALKPDEGQD------IP-  411 (608)
T ss_dssp             SSSCCEECC---EEEECSSCEEEECCEECCTTCEEEEESCTTS--SHHHH------HHHHHTSSCCSBCCC------CC-
T ss_pred             cceeEEecC---cccccCceEEEEecCccccceEEEEECCCCC--cHHHH------HHHHhcCCCCCCCcC------cc-
Confidence            445555432   23478999999854           899999  56655      579999999999962      11 


Q ss_pred             chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhh
Q psy7365         122 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVW  201 (601)
Q Consensus       122 ~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~  201 (601)
                           +..++|+||++..++..||.|++....  .+...  ....+.++++.+||.+..++++.+|||||||||+|||||
T Consensus       412 -----~~~i~~~~q~~~~~~~~tv~e~~~~~~--~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL  482 (608)
T 3j16_B          412 -----KLNVSMKPQKIAPKFPGTVRQLFFKKI--RGQFL--NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLAL  482 (608)
T ss_dssp             -----SCCEEEECSSCCCCCCSBHHHHHHHHC--SSTTT--SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHT
T ss_pred             -----CCcEEEecccccccCCccHHHHHHHHh--hcccc--cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHH
Confidence                 346999999987766789999875432  12111  123567899999999999999999999999999865433


Q ss_pred             cchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEE
Q psy7365         202 FNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTV  281 (601)
Q Consensus       202 ~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~l  281 (601)
                      .                                      ++                                   |++|
T Consensus       483 ~--------------------------------------~~-----------------------------------p~lL  489 (608)
T 3j16_B          483 G--------------------------------------IP-----------------------------------ADIY  489 (608)
T ss_dssp             T--------------------------------------SC-----------------------------------CSEE
T ss_pred             H--------------------------------------hC-----------------------------------CCEE
Confidence            2                                      22                                   5899


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecC--CccccccCcccc
Q psy7365         282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA--GKLQCCGSSVFL  351 (601)
Q Consensus       282 iLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~--GkIv~~G~~~lL  351 (601)
                      ||||||+|||+.++..++++|+++.    +..|+|||++|||++++..+|||+++|.+  |++...|++..+
T Consensus       490 lLDEPT~gLD~~~~~~i~~ll~~l~----~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~  557 (608)
T 3j16_B          490 LIDEPSAYLDSEQRIICSKVIRRFI----LHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESL  557 (608)
T ss_dssp             EECCTTTTCCHHHHHHHHHHHHHHH----HHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEH
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHH----HhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHH
Confidence            9999999999999999999999874    23589999999999999999999999985  888888876543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.96  E-value=1.2e-29  Score=296.94  Aligned_cols=201  Identities=22%  Similarity=0.210  Sum_probs=151.4

Q ss_pred             cchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccC
Q psy7365          46 GAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI  119 (601)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~  119 (601)
                      +..+..++||++.|++  .+.++++|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.  
T Consensus       668 ~~~mL~v~nLs~~Y~g--~~~~iL~dVSl~I~~GeivaIiGpNGS--GKSTL------LklLaGll~P~sG~I~~~~~--  735 (986)
T 2iw3_A          668 QKAIVKVTNMEFQYPG--TSKPQITDINFQCSLSSRIAVIGPNGA--GKSTL------INVLTGELLPTSGEVYTHEN--  735 (986)
T ss_dssp             TSEEEEEEEEEECCTT--CSSCSEEEEEEEEETTCEEEECSCCCH--HHHHH------HHHHTTSSCCSEEEEEECTT--
T ss_pred             CCceEEEEeeEEEeCC--CCceeeeccEEEEcCCCEEEEECCCCC--CHHHH------HHHHhCCCCCCceEEEEcCc--
Confidence            3456779999999853  235689999999988      999999  56654      57999999999999999863  


Q ss_pred             CCchHHhcccEEEEccCCC----CCCCCCHHHHHHHhHhh----------------------------------------
Q psy7365         120 RTDMTTIRRSLGVCPQYNA----LFDKLTVEEHMWFYSQL----------------------------------------  155 (601)
Q Consensus       120 ~~~~~~~~~~ig~v~Q~~~----~~~~~tv~e~l~~~~~~----------------------------------------  155 (601)
                              .++||++|++.    ...+.|+.+++.+..+.                                        
T Consensus       736 --------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~  807 (986)
T 2iw3_A          736 --------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHS  807 (986)
T ss_dssp             --------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEE
T ss_pred             --------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhh
Confidence                    14778877752    12245666666442100                                        


Q ss_pred             -------------------------------------------------------------cCCChHHHHHHHHHHHHHc
Q psy7365         156 -------------------------------------------------------------KQVPKDLAQLEISNMIGDL  174 (601)
Q Consensus       156 -------------------------------------------------------------~~~~~~~~~~~~~~~l~~~  174 (601)
                                                                                   .+..+...+.++.++++.+
T Consensus       808 r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~l  887 (986)
T 2iw3_A          808 RRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSML  887 (986)
T ss_dssp             EEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHT
T ss_pred             hhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHc
Confidence                                                                         0000111235688999999


Q ss_pred             CCCc-c-cCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHH
Q psy7365         175 GIPH-K-RTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMA  252 (601)
Q Consensus       175 gl~~-~-~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  252 (601)
                      ||.. . .++++++|||||||||+|||+|                                      +++          
T Consensus       888 GL~~~~~~~~~~~~LSGGQkQRVaLArAL--------------------------------------~~~----------  919 (986)
T 2iw3_A          888 GLDPEIVSHSRIRGLSGGQKVKLVLAAGT--------------------------------------WQR----------  919 (986)
T ss_dssp             TCCHHHHHHSCGGGCCHHHHHHHHHHHHH--------------------------------------TTC----------
T ss_pred             CCCchhhcCCCccccCHHHHHHHHHHHHH--------------------------------------HhC----------
Confidence            9985 3 6889999999999999754432                                      233          


Q ss_pred             HHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCC
Q psy7365         253 LETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGD  332 (601)
Q Consensus       253 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~D  332 (601)
                                               |++|||||||+|||+.++..+.+.|+++        |.|||++|||++++..+||
T Consensus       920 -------------------------P~LLLLDEPT~gLD~~s~~~L~~~L~~~--------g~tVIiISHD~e~v~~l~D  966 (986)
T 2iw3_A          920 -------------------------PHLIVLDEPTNYLDRDSLGALSKALKEF--------EGGVIIITHSAEFTKNLTE  966 (986)
T ss_dssp             -------------------------CSEEEEECGGGTCCHHHHHHHHHHHHSC--------SSEEEEECSCHHHHTTTCC
T ss_pred             -------------------------CCEEEEECCccCCCHHHHHHHHHHHHHh--------CCEEEEEECCHHHHHHhCC
Confidence                                     5899999999999999999999988642        5699999999999999999


Q ss_pred             EEEEecCCccccccC
Q psy7365         333 RIAIIAAGKLQCCGS  347 (601)
Q Consensus       333 rv~vL~~GkIv~~G~  347 (601)
                      ++++|.+|+++..|.
T Consensus       967 rVivL~~G~Iv~~G~  981 (986)
T 2iw3_A          967 EVWAVKDGRMTPSGH  981 (986)
T ss_dssp             EEECCBTTBCCC---
T ss_pred             EEEEEECCEEEEeCC
Confidence            999999999876653

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.96  E-value=2.6e-29  Score=255.95  Aligned_cols=187  Identities=18%  Similarity=0.232  Sum_probs=146.0

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccccc------ccccccccccccCC---cccccccccCCCCcccCCCCCHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN------SFARGYYLSLDMKS---APQKSYIGYCPQFDALNDRLTPREH  392 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~------~~g~g~~igld~~~---~~~~~~ig~v~Q~~~l~~~lTv~E~  392 (601)
                      +++++...-++.+++++...   +|++++++.      ..|..++.+.+...   ...++.+||+||++.+|+ .||+||
T Consensus        37 ~~vsl~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~en  112 (260)
T 2ghi_A           37 KSINFFIPSGTTCALVGHTG---SGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYN  112 (260)
T ss_dssp             EEEEEEECTTCEEEEECSTT---SSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHH
T ss_pred             EeeEEEECCCCEEEEECCCC---CCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHH
Confidence            88888888999999997522   555554321      13444444444322   123567999999998886 699999


Q ss_pred             HHHhHHhcCCChhHHHHHHHHHHHHcCCCcc-----------cccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCC
Q psy7365         393 LEFYSRVRNLPSVLLNTIVNESLNKFALGHY-----------SDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGM  461 (601)
Q Consensus       393 L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~-----------~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGL  461 (601)
                      +.+...  ...    .+++.++++.+++.+.           .++++.+|||||||||+|||||+++|++|||||||+||
T Consensus       113 l~~~~~--~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~L  186 (260)
T 2ghi_A          113 ILYGKL--DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSL  186 (260)
T ss_dssp             HHTTCT--TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTT
T ss_pred             HhccCC--CCC----HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccC
Confidence            987421  111    2345667777776432           24578899999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         462 DPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       462 D~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      |+.+++.++++|+++.+ |+|||++|||++++. .|||+++|++|+++..|+++++.+.
T Consensus       187 D~~~~~~i~~~l~~l~~-~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~  243 (260)
T 2ghi_A          187 DSKTEYLFQKAVEDLRK-NRTLIIIAHRLSTIS-SAESIILLNKGKIVEKGTHKDLLKL  243 (260)
T ss_dssp             CHHHHHHHHHHHHHHTT-TSEEEEECSSGGGST-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhc
Confidence            99999999999999854 899999999999986 4999999999999999999998654

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.96  E-value=9.1e-30  Score=273.00  Aligned_cols=191  Identities=18%  Similarity=0.247  Sum_probs=154.6

Q ss_pred             CcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc------cccccccccccccCCcc---cccccccCCCCcccC
Q psy7365         314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK------NSFARGYYLSLDMKSAP---QKSYIGYCPQFDALN  384 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk------~~~g~g~~igld~~~~~---~~~~ig~v~Q~~~l~  384 (601)
                      +..++   +++++...-++.+++++...   +|++++++      ...|+.++.+.++...+   .++.+||+||++.+|
T Consensus        33 ~~~~L---~~vsl~i~~Ge~~~llGpsG---sGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf  106 (390)
T 3gd7_A           33 GNAIL---ENISFSISPGQRVGLLGRTG---SGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIF  106 (390)
T ss_dssp             SCCSE---EEEEEEECTTCEEEEEESTT---SSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCC
T ss_pred             CeEEe---eceeEEEcCCCEEEEECCCC---ChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCEEEEcCCcccC
Confidence            34455   88999999999999998522   55555432      13345555555544322   357899999999988


Q ss_pred             CCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCc-----------CChHHHHHHHHHHHHhCCCCEEE
Q psy7365         385 DRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRT-----------LSGGNKRKLSTAIALLGNTPLIF  453 (601)
Q Consensus       385 ~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~-----------LSgGqkQRl~lA~AL~~~P~lLl  453 (601)
                      + +||+||+.++.   ..    .++++.++++.++|.++.++++.+           |||||||||+|||||+.+|++||
T Consensus       107 ~-~tv~enl~~~~---~~----~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLL  178 (390)
T 3gd7_A          107 S-GTFRKNLDPNA---AH----SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILL  178 (390)
T ss_dssp             S-EEHHHHHCTTC---CS----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             c-cCHHHHhhhcc---cc----CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            7 69999996432   11    235678899999999999999988           99999999999999999999999


Q ss_pred             EECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         454 LDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       454 LDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      |||||+|||+..+.++++.|+++. +|+|+|++|||++.+ ..||||++|++|+|+..|+++++.+.
T Consensus       179 LDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~el~~~  243 (390)
T 3gd7_A          179 LDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILELYHY  243 (390)
T ss_dssp             EESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSGGG-TTCSEEEEEETTEEEEESSHHHHHHC
T ss_pred             EeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEECCHHHHHhC
Confidence            999999999999999999998863 589999999998655 56999999999999999999998653

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.95  E-value=1.7e-28  Score=245.26  Aligned_cols=175  Identities=20%  Similarity=0.260  Sum_probs=134.2

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccccc-------ccccccccccccCCcccccccccCCCCcccCCCCCHHHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN-------SFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLE  394 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~-------~~g~g~~igld~~~~~~~~~ig~v~Q~~~l~~~lTv~E~L~  394 (601)
                      +++++...-++.+++++...   +|++++++.       ..|...+          ..++||+||++.+++. ||+||+.
T Consensus        25 ~~vsl~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~p~~G~i~~----------~g~i~~v~q~~~~~~~-tv~enl~   90 (229)
T 2pze_A           25 KDINFKIERGQLLAVAGSTG---AGKTSLLMMIMGELEPSEGKIKH----------SGRISFCSQFSWIMPG-TIKENII   90 (229)
T ss_dssp             EEEEEEEETTCEEEEECCTT---SSHHHHHHHHTTSSCCSEEEEEE----------CSCEEEECSSCCCCSB-CHHHHHH
T ss_pred             eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHhCCCcCCccEEEE----------CCEEEEEecCCcccCC-CHHHHhh
Confidence            88888888999999997532   566665442       2222211          1258999999988875 9999998


Q ss_pred             HhHHhcCCChhHHHHHHHHHHHHcCCCc-----------ccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCH
Q psy7365         395 FYSRVRNLPSVLLNTIVNESLNKFALGH-----------YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP  463 (601)
Q Consensus       395 ~~~~~~g~~~~~~~~~~~~lLe~~~L~~-----------~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~  463 (601)
                      ++..   ...    ....++++.+++.+           ..++++.+||||||||++||+||+++|++|||||||+|||+
T Consensus        91 ~~~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~  163 (229)
T 2pze_A           91 FGVS---YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV  163 (229)
T ss_dssp             TTSC---CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCH
T ss_pred             ccCC---cCh----HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCH
Confidence            7421   111    12233444444432           22345689999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         464 GARRFLWTC-IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       464 ~~~~~i~~l-L~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      .+++.+++. ++++. +|+|||++|||++++. .|||+++|++|+++..|+++++.+
T Consensus       164 ~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~  218 (229)
T 2pze_A          164 LTEKEIFESCVCKLM-ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN  218 (229)
T ss_dssp             HHHHHHHHHCCCCCT-TTSEEEEECCCHHHHH-HCSEEEEEETTEEEEEECHHHHHT
T ss_pred             HHHHHHHHHHHHHhh-CCCEEEEEcCChHHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence            999999997 45554 4899999999999987 499999999999999999999864

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.95  E-value=2.9e-28  Score=244.83  Aligned_cols=179  Identities=20%  Similarity=0.276  Sum_probs=135.9

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccccc-------ccccccccccccCCcccccccccCCCCcccCCCCCHHHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN-------SFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLE  394 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~-------~~g~g~~igld~~~~~~~~~ig~v~Q~~~l~~~lTv~E~L~  394 (601)
                      +++++...-++.+++++...   +|++++++.       ..|+..+.          ..+||+||++.+ +.+||+||+.
T Consensus        22 ~~vsl~i~~Ge~~~i~G~nG---sGKSTLl~~l~Gl~~p~~G~I~~~----------g~i~~v~Q~~~~-~~~tv~enl~   87 (237)
T 2cbz_A           22 NGITFSIPEGALVAVVGQVG---CGKSSLLSALLAEMDKVEGHVAIK----------GSVAYVPQQAWI-QNDSLRENIL   87 (237)
T ss_dssp             EEEEEEECTTCEEEEECSTT---SSHHHHHHHHTTCSEEEEEEEEEC----------SCEEEECSSCCC-CSEEHHHHHH
T ss_pred             eeeEEEECCCCEEEEECCCC---CCHHHHHHHHhcCCCCCCceEEEC----------CEEEEEcCCCcC-CCcCHHHHhh
Confidence            78888888999999998532   566665442       22222111          258999999864 5789999998


Q ss_pred             HhHHhcCCChhHHHHHHHH---HHHHcCCCc-----ccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHH
Q psy7365         395 FYSRVRNLPSVLLNTIVNE---SLNKFALGH-----YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR  466 (601)
Q Consensus       395 ~~~~~~g~~~~~~~~~~~~---lLe~~~L~~-----~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~  466 (601)
                      ++...   .... .+++.+   +++.+++.+     ..++++.+||||||||++||+||+.+|++|||||||+|||+.++
T Consensus        88 ~~~~~---~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~  163 (237)
T 2cbz_A           88 FGCQL---EEPY-YRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG  163 (237)
T ss_dssp             TTSCC---CTTH-HHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHH
T ss_pred             Ccccc---CHHH-HHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence            75321   1111 112222   222333321     35788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH---HHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         467 RFLWTCIE---RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       467 ~~i~~lL~---~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      ..+++.|.   ++ .+|+|||++|||++++. .|||+++|++|++++.|+++++.+.
T Consensus       164 ~~i~~~l~~~~~~-~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~  218 (237)
T 2cbz_A          164 KHIFENVIGPKGM-LKNKTRILVTHSMSYLP-QVDVIIVMSGGKISEMGSYQELLAR  218 (237)
T ss_dssp             HHHHHHTTSTTST-TTTSEEEEECSCSTTGG-GSSEEEEEETTEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHhh-cCCCEEEEEecChHHHH-hCCEEEEEeCCEEEEeCCHHHHhhc
Confidence            99999995   34 35899999999999986 6999999999999999999998654

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.95  E-value=8.1e-28  Score=270.93  Aligned_cols=188  Identities=16%  Similarity=0.269  Sum_probs=149.4

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCC---cccccccccCCCCcccCCCCCHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKS---APQKSYIGYCPQFDALNDRLTPRE  391 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~---~~~~~~ig~v~Q~~~l~~~lTv~E  391 (601)
                      +++++..+.++.+++++...   +|+++++       ++..|+..+.|.+...   ...++++||+||++.+|+. |++|
T Consensus       360 ~~i~l~i~~G~~~~ivG~sG---sGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~e  435 (582)
T 3b5x_A          360 SHVSFSIPQGKTVALVGRSG---SGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIAN  435 (582)
T ss_pred             ccceEEECCCCEEEEECCCC---CCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHH
Confidence            88888888899999997522   5555543       2344555555544432   2346789999999998874 9999


Q ss_pred             HHHHhHHhcCCChhHHHHHHHHHHHHcCCCccccc-----------ccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCC
Q psy7365         392 HLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDR-----------EVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG  460 (601)
Q Consensus       392 ~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~-----------~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsG  460 (601)
                      |+.+... .+.    .++++.++++.+++.+..++           +..+||||||||++|||||+++|++|+|||||+|
T Consensus       436 ni~~~~~-~~~----~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~  510 (582)
T 3b5x_A          436 NIAYAAE-GEY----TREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSA  510 (582)
T ss_pred             HHhccCC-CCC----CHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence            9987431 111    13456777888877655444           4579999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         461 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       461 LD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      ||+.+++.+++.|+++. +|+|+|++||+++.+. .||||++|++|+++..|+++++.+.
T Consensus       511 LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~  568 (582)
T 3b5x_A          511 LDTESERAIQAALDELQ-KNKTVLVIAHRLSTIE-QADEILVVDEGEIIERGRHADLLAQ  568 (582)
T ss_pred             CCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence            99999999999999985 4899999999999987 6999999999999999999998754

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.94  E-value=1.1e-27  Score=269.82  Aligned_cols=188  Identities=16%  Similarity=0.276  Sum_probs=148.6

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCc---ccccccccCCCCcccCCCCCHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSA---PQKSYIGYCPQFDALNDRLTPRE  391 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~---~~~~~ig~v~Q~~~l~~~lTv~E  391 (601)
                      +++++..+.++.+++++...   +|+++++       ++..|+..+.|.+....   ..++++||+||++.+|+. |++|
T Consensus       360 ~~v~~~i~~G~~~~ivG~sG---sGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~e  435 (582)
T 3b60_A          360 RNINLKIPAGKTVALVGRSG---SGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVAN  435 (582)
T ss_dssp             EEEEEEECTTCEEEEEECTT---SSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHH
T ss_pred             cceeEEEcCCCEEEEECCCC---CCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHH
Confidence            77788888888888887522   5555543       23445555555554332   246789999999998874 9999


Q ss_pred             HHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccc-----------cccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCC
Q psy7365         392 HLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSD-----------REVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG  460 (601)
Q Consensus       392 ~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~-----------~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsG  460 (601)
                      |+.+... .+.+    ++++.++++.+++.+..+           ++..+||||||||++|||||+++|++++|||||+|
T Consensus       436 ni~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~  510 (582)
T 3b60_A          436 NIAYART-EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSA  510 (582)
T ss_dssp             HHHTTTT-SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSS
T ss_pred             HHhccCC-CCCC----HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECcccc
Confidence            9987531 1122    345677777777755443           35589999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         461 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       461 LD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      ||+.+++.+++.|+++.+ |+|+|++||+++.+. .||||++|++|++++.|+++++.+.
T Consensus       511 LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~  568 (582)
T 3b60_A          511 LDTESERAIQAALDELQK-NRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQ  568 (582)
T ss_dssp             CCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhC-CCEEEEEeccHHHHH-hCCEEEEEECCEEEEecCHHHHHHc
Confidence            999999999999999864 899999999999986 6999999999999999999999765

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.94  E-value=1.9e-27  Score=267.67  Aligned_cols=187  Identities=20%  Similarity=0.288  Sum_probs=145.0

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC---cccccccccCCCCcccCCCCCHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS---APQKSYIGYCPQFDALNDRLTPRE  391 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~---~~~~~~ig~v~Q~~~l~~~lTv~E  391 (601)
                      |++++..+.++.+++++...   +|++++++       +..|+..+.|.+...   ...++++||+||++.+|+. |++|
T Consensus       358 ~~isl~i~~G~~~~ivG~sG---sGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~e  433 (578)
T 4a82_A          358 KDINLSIEKGETVAFVGMSG---GGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKE  433 (578)
T ss_dssp             EEEEEEECTTCEEEEECSTT---SSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHH
T ss_pred             eeeEEEECCCCEEEEECCCC---ChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHH
Confidence            77888888888998887522   45554432       334455555555432   2246789999999998876 9999


Q ss_pred             HHHHhHHhcCCChhHHHHHHHHHHHHcCCCc-----------ccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCC
Q psy7365         392 HLEFYSRVRNLPSVLLNTIVNESLNKFALGH-----------YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG  460 (601)
Q Consensus       392 ~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~-----------~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsG  460 (601)
                      |+.+...  ...    .+++.+.++..++.+           ..+++..+||||||||++|||||+++|++++|||||+|
T Consensus       434 ni~~~~~--~~~----~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~  507 (578)
T 4a82_A          434 NILLGRP--TAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSA  507 (578)
T ss_dssp             HHGGGCS--SCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred             HHhcCCC--CCC----HHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence            9987421  111    233555566555533           33445578999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         461 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       461 LD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      ||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus       508 LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~el~~~  565 (578)
T 4a82_A          508 LDLESESIIQEALDVLS-KDRTTLIVAHRLSTITH-ADKIVVIENGHIVETGTHRELIAK  565 (578)
T ss_dssp             CCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGTTT-CSEEEEEETTEEEEEECHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence            99999999999999874 57999999999999865 999999999999999999999764

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.94  E-value=1.5e-27  Score=269.01  Aligned_cols=187  Identities=21%  Similarity=0.301  Sum_probs=144.6

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCc---ccccccccCCCCcccCCCCCHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSA---PQKSYIGYCPQFDALNDRLTPRE  391 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~---~~~~~ig~v~Q~~~l~~~lTv~E  391 (601)
                      +++++..+.++.+++++...   +|+++++       ++..|+..+.+.+....   ..++++||+||++.+|+. |++|
T Consensus       360 ~~isl~i~~Ge~~~ivG~sG---sGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~e  435 (587)
T 3qf4_A          360 SGVNFSVKPGSLVAVLGETG---SGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKE  435 (587)
T ss_dssp             EEEEEEECTTCEEEEECSSS---SSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHH
T ss_pred             eceEEEEcCCCEEEEECCCC---CCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHH
Confidence            67777778888888887422   4555443       23345555555554332   246789999999998865 9999


Q ss_pred             HHHHhHHhcCCChhHHHHHHHHHHHHc-----------CCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCC
Q psy7365         392 HLEFYSRVRNLPSVLLNTIVNESLNKF-----------ALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG  460 (601)
Q Consensus       392 ~L~~~~~~~g~~~~~~~~~~~~lLe~~-----------~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsG  460 (601)
                      |+.+...  ....    +++.+.++..           |++...++++.+||||||||++|||||+++|++|||||||++
T Consensus       436 ni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~  509 (587)
T 3qf4_A          436 NLKWGRE--DATD----DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSS  509 (587)
T ss_dssp             HHTTTCS--SCCH----HHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTT
T ss_pred             HHhccCC--CCCH----HHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence            9976421  1111    2223333333           444455678889999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         461 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       461 LD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      ||+.+++.+.+.|+++. +|+|+|++||+++.+. .||||++|++|++++.|+++++.+.
T Consensus       510 LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~el~~~  567 (587)
T 3qf4_A          510 VDPITEKRILDGLKRYT-KGCTTFIITQKIPTAL-LADKILVLHEGKVAGFGTHKELLEH  567 (587)
T ss_dssp             SCHHHHHHHHHHHHHHS-TTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEECHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCCEEEEEecChHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence            99999999999999874 5899999999999986 7999999999999999999999764

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.94  E-value=1.8e-27  Score=268.97  Aligned_cols=187  Identities=19%  Similarity=0.290  Sum_probs=146.3

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc---ccccccccCCCCcccCCCCCHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA---PQKSYIGYCPQFDALNDRLTPRE  391 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~---~~~~~ig~v~Q~~~l~~~lTv~E  391 (601)
                      |++++..+.++.+++++...   +|++++++       +..|+..+.|.+....   ..++++||+||++.+|+ .|++|
T Consensus       372 ~~isl~i~~G~~~~ivG~sG---sGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~e  447 (598)
T 3qf4_B          372 KDITFHIKPGQKVALVGPTG---SGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-TTVKE  447 (598)
T ss_dssp             CSEEEECCTTCEEEEECCTT---SSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-SBHHH
T ss_pred             cceEEEEcCCCEEEEECCCC---CcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-ccHHH
Confidence            77777788888888887522   56665432       3345554555554322   34678999999998886 59999


Q ss_pred             HHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccc-----------cCcCChHHHHHHHHHHHHhCCCCEEEEECCCCC
Q psy7365         392 HLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDRE-----------VRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG  460 (601)
Q Consensus       392 ~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~-----------~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsG  460 (601)
                      |+.+...  +...    +++.++++..++.+..++.           ..+||||||||++|||||+.+|++|||||||++
T Consensus       448 ni~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~  521 (598)
T 3qf4_B          448 NLKYGNP--GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSN  521 (598)
T ss_dssp             HHHSSST--TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTT
T ss_pred             HHhcCCC--CCCH----HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccC
Confidence            9987421  1121    2345566666665444433           478999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         461 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       461 LD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      ||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus       522 LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  579 (598)
T 3qf4_B          522 VDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDELIQK  579 (598)
T ss_dssp             CCHHHHHHHHHHHHHHH-TTSEEEEESCCTTHHHH-CSEEEEECSSSEEECSCHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence            99999999999999985 58999999999999976 999999999999999999999764

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.94  E-value=9e-27  Score=266.44  Aligned_cols=126  Identities=24%  Similarity=0.345  Sum_probs=101.5

Q ss_pred             CCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCc-ccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhh
Q psy7365         142 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPH-KRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNV  220 (601)
Q Consensus       142 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~  220 (601)
                      .+||.||+.|+...     . ...+..+.++.+|+.. ..++++.+|||||||||+|||||+                  
T Consensus       504 ~ltv~e~l~~~~~~-----~-~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~------------------  559 (670)
T 3ux8_A          504 DMTVEDALDFFASI-----P-KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELH------------------  559 (670)
T ss_dssp             TSBHHHHHHHTTTC-----H-HHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHH------------------
T ss_pred             hCCHHHHHHHHHHh-----h-hHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHh------------------
Confidence            57999999886421     1 2245668899999975 568999999999999998655433                  


Q ss_pred             hHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHH
Q psy7365         221 ILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWE  300 (601)
Q Consensus       221 ~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~  300 (601)
                                          ++|                                ..|++|||||||+||||.++..+++
T Consensus       560 --------------------~~p--------------------------------~~p~llllDEPt~~LD~~~~~~i~~  587 (670)
T 3ux8_A          560 --------------------RRS--------------------------------NGRTLYILDEPTTGLHVDDIARLLD  587 (670)
T ss_dssp             --------------------SCC--------------------------------CSCEEEEEESTTTTCCHHHHHHHHH
T ss_pred             --------------------hCC--------------------------------CCCcEEEEeCCCCCCCHHHHHHHHH
Confidence                                333                                1268999999999999999999999


Q ss_pred             HHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEe------cCCccccccCcc
Q psy7365         301 LLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSV  349 (601)
Q Consensus       301 ~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL------~~GkIv~~G~~~  349 (601)
                      +|+++.     .+|+|||++|||++++ ..|||+++|      .+|+++..|++.
T Consensus       588 ~l~~l~-----~~g~tvi~vtHd~~~~-~~~d~i~~l~~~~g~~~G~i~~~g~~~  636 (670)
T 3ux8_A          588 VLHRLV-----DNGDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPE  636 (670)
T ss_dssp             HHHHHH-----HTTCEEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEECHH
T ss_pred             HHHHHH-----HCCCEEEEEeCCHHHH-HhCCEEEEecCCcCCCCCEEEEecCHH
Confidence            999983     3589999999999987 569999999      789998877653

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.93  E-value=9.8e-27  Score=240.49  Aligned_cols=174  Identities=19%  Similarity=0.219  Sum_probs=131.6

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccccc-------ccccccccccccCCcccccccccCCCCcccCCCCCHHHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN-------SFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLE  394 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~-------~~g~g~~igld~~~~~~~~~ig~v~Q~~~l~~~lTv~E~L~  394 (601)
                      +++++...-++.+++++...   +|++++++.       ..|..++          ..++||+||++.+|+. ||+||+.
T Consensus        55 ~~isl~i~~Ge~~~i~G~NG---sGKSTLlk~l~Gl~~p~~G~I~~----------~g~i~~v~Q~~~l~~~-tv~enl~  120 (290)
T 2bbs_A           55 KDINFKIERGQLLAVAGSTG---AGKTSLLMMIMGELEPSEGKIKH----------SGRISFCSQNSWIMPG-TIKENII  120 (290)
T ss_dssp             EEEEEEECTTCEEEEEESTT---SSHHHHHHHHTTSSCEEEEEEEC----------CSCEEEECSSCCCCSS-BHHHHHH
T ss_pred             EeeEEEEcCCCEEEEECCCC---CcHHHHHHHHhcCCCCCCcEEEE----------CCEEEEEeCCCccCcc-cHHHHhh
Confidence            88888888999999998532   566665542       1122211          1258999999988875 9999997


Q ss_pred             HhHHhcCCChhHHHHHHHHHHHHcCCCcc-----------cccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCH
Q psy7365         395 FYSRVRNLPSVLLNTIVNESLNKFALGHY-----------SDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDP  463 (601)
Q Consensus       395 ~~~~~~g~~~~~~~~~~~~lLe~~~L~~~-----------~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~  463 (601)
                       ..   ....    ....++++.+++.+.           .++++.+||||||||++||+||+.+|++|||||||+|||+
T Consensus       121 -~~---~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~  192 (290)
T 2bbs_A          121 -GV---SYDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV  192 (290)
T ss_dssp             -TT---CCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH
T ss_pred             -Cc---ccch----HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCH
Confidence             31   1111    123344455554322           2334689999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-HHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         464 GARRFLWTCI-ERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       464 ~~~~~i~~lL-~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      .++..+++.+ +++. +|+|||++|||++++. .|||+++|++|+++..|+++++..
T Consensus       193 ~~~~~i~~~ll~~~~-~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~  247 (290)
T 2bbs_A          193 LTEKEIFESCVCKLM-ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN  247 (290)
T ss_dssp             HHHHHHHHHCCCCCT-TTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHHHHHHHHhh-CCCEEEEEecCHHHHH-cCCEEEEEECCeEEEeCCHHHHhh
Confidence            9999999974 4553 5899999999999986 599999999999999999999854

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.91  E-value=1e-24  Score=252.93  Aligned_cols=108  Identities=24%  Similarity=0.364  Sum_probs=90.9

Q ss_pred             HHHHHHHHHcCCCc-ccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCC
Q psy7365         165 LEISNMIGDLGIPH-KRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHP  243 (601)
Q Consensus       165 ~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p  243 (601)
                      .++.++++.+||.. ..++++.+|||||||||+||++|..+                                      |
T Consensus       708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~--------------------------------------p  749 (842)
T 2vf7_A          708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRS--------------------------------------G  749 (842)
T ss_dssp             HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSC--------------------------------------C
T ss_pred             HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhC--------------------------------------C
Confidence            46789999999987 46999999999999999865443222                                      1


Q ss_pred             cchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecc
Q psy7365         244 MNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHY  323 (601)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHd  323 (601)
                                                      .+|++|||||||+|||+..+..++++|+++.     ..|.|||++|||
T Consensus       750 --------------------------------~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~-----~~G~tVIvisHd  792 (842)
T 2vf7_A          750 --------------------------------RGGTVYVLDEPTTGLHPADVERLQRQLVKLV-----DAGNTVIAVEHK  792 (842)
T ss_dssp             --------------------------------SSCEEEEEECTTTTCCHHHHHHHHHHHHHHH-----HTTCEEEEECCC
T ss_pred             --------------------------------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-----hCCCEEEEEcCC
Confidence                                            0268999999999999999999999999983     358999999999


Q ss_pred             hhHHHhcCCEEEEe------cCCccccccCc
Q psy7365         324 MDEADLLGDRIAII------AAGKLQCCGSS  348 (601)
Q Consensus       324 l~~~~~l~Drv~vL------~~GkIv~~G~~  348 (601)
                      ++++ ..|||+++|      .+|+++..+++
T Consensus       793 l~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~  822 (842)
T 2vf7_A          793 MQVV-AASDWVLDIGPGAGEDGGRLVAQGTP  822 (842)
T ss_dssp             HHHH-TTCSEEEEECSSSGGGCCSEEEEECH
T ss_pred             HHHH-HhCCEEEEECCCCCCCCCEEEEEcCH
Confidence            9999 789999999      57888877654

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.91  E-value=1.2e-24  Score=253.05  Aligned_cols=125  Identities=25%  Similarity=0.371  Sum_probs=98.7

Q ss_pred             CCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCc-ccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhh
Q psy7365         142 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPH-KRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNV  220 (601)
Q Consensus       142 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~  220 (601)
                      .+||.|++.|+..   .+  . ..++.++++.+||.. ..++++.+|||||||||++|++|.                  
T Consensus       806 ~ltv~e~l~~~~~---~~--~-~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~------------------  861 (972)
T 2r6f_A          806 DMTVEDALDFFAS---IP--K-IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELH------------------  861 (972)
T ss_dssp             TSBHHHHHHHTCS---CH--H-HHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHS------------------
T ss_pred             hcCHHHHHHHHhc---ch--h-HHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHh------------------
Confidence            4678888877532   21  1 234578999999997 789999999999999998654332                  


Q ss_pred             hHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHH
Q psy7365         221 ILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWE  300 (601)
Q Consensus       221 ~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~  300 (601)
                                          .+|                                ..|++|||||||+|||+..+..+++
T Consensus       862 --------------------~~p--------------------------------~~p~lLILDEPTsGLD~~~~~~l~~  889 (972)
T 2r6f_A          862 --------------------RRS--------------------------------NGRTLYILDEPTTGLHVDDIARLLD  889 (972)
T ss_dssp             --------------------SCC--------------------------------CSCEEEEEECTTTTCCHHHHHHHHH
T ss_pred             --------------------cCC--------------------------------CCCCEEEEECCCCCCCHHHHHHHHH
Confidence                                222                                1268999999999999999999999


Q ss_pred             HHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEe------cCCccccccCc
Q psy7365         301 LLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSS  348 (601)
Q Consensus       301 ~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL------~~GkIv~~G~~  348 (601)
                      +|+++.     ..|.|||++|||++++ ..|||+++|      .+|+++..+++
T Consensus       890 lL~~L~-----~~G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~  937 (972)
T 2r6f_A          890 VLHRLV-----DNGDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTP  937 (972)
T ss_dssp             HHHHHH-----HTTCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred             HHHHHH-----hCCCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCH
Confidence            999983     3589999999999987 589999999      46777766543

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.91  E-value=4.4e-24  Score=249.54  Aligned_cols=127  Identities=26%  Similarity=0.352  Sum_probs=102.6

Q ss_pred             CCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCc-ccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhh
Q psy7365         142 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPH-KRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNV  220 (601)
Q Consensus       142 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~  220 (601)
                      .+||.|++.|+...      ....++.++|+.+||.. ..++++.+|||||||||+|||+|..                 
T Consensus       766 ~~tv~eal~f~~~~------~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~-----------------  822 (916)
T 3pih_A          766 DMTVDEALEFFKNI------PSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRK-----------------  822 (916)
T ss_dssp             SSBHHHHHHHTTTC------HHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTS-----------------
T ss_pred             hCCHHHHHHHHhcc------hhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhh-----------------
Confidence            36888888876431      12346778999999985 4689999999999999986554332                 


Q ss_pred             hHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHH
Q psy7365         221 ILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWE  300 (601)
Q Consensus       221 ~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~  300 (601)
                                           +|                                .+|++|||||||+|||+..++.+++
T Consensus       823 ---------------------~p--------------------------------~~p~LLILDEPTsGLD~~~~~~L~~  849 (916)
T 3pih_A          823 ---------------------RD--------------------------------TGRTLYILDEPTVGLHFEDVRKLVE  849 (916)
T ss_dssp             ---------------------CC--------------------------------CSSEEEEEESTTTTCCHHHHHHHHH
T ss_pred             ---------------------CC--------------------------------CCCCEEEEECCCCCCCHHHHHHHHH
Confidence                                 22                                1368999999999999999999999


Q ss_pred             HHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEe------cCCccccccCccc
Q psy7365         301 LLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVF  350 (601)
Q Consensus       301 ~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL------~~GkIv~~G~~~l  350 (601)
                      +|.++.     .+|.|||+||||++++. .||+|++|      .+|+++..|++..
T Consensus       850 lL~~L~-----~~G~TVIvI~HdL~~i~-~ADrIivLgp~gg~~~G~Iv~~Gtpee  899 (916)
T 3pih_A          850 VLHRLV-----DRGNTVIVIEHNLDVIK-NADHIIDLGPEGGKEGGYIVATGTPEE  899 (916)
T ss_dssp             HHHHHH-----HTTCEEEEECCCHHHHT-TCSEEEEEESSSGGGCCEEEEEESHHH
T ss_pred             HHHHHH-----hcCCEEEEEeCCHHHHH-hCCEEEEecCCCCCCCCEEEEEcCHHH
Confidence            999983     35899999999999876 59999999      7899998887654

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.2e-27  Score=261.88  Aligned_cols=187  Identities=13%  Similarity=0.103  Sum_probs=146.5

Q ss_pred             chhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCee-E-EEEcccc
Q psy7365          47 AYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSG-T-AKIYDHD  118 (601)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G-~-v~~~g~~  118 (601)
                      .++..++||++.|+          ++||++.+      +|||||  |||||      .|+|+|+++|++| + |.++|. 
T Consensus       116 ~~mi~~~nl~~~y~----------~vsl~i~~Ge~v~IvGpnGs--GKSTL------lr~L~Gl~~p~~G~~pI~vdg~-  176 (460)
T 2npi_A          116 HTMKYIYNLHFMLE----------KIRMSNFEGPRVVIVGGSQT--GKTSL------SRTLCSYALKFNAYQPLYINLD-  176 (460)
T ss_dssp             CTHHHHHHHHHHHH----------HHHHHSSSCCCEEEEESTTS--SHHHH------HHHHHHTTHHHHCCCCEEEECC-
T ss_pred             cchhhhhhhhehhh----------cCceEeCCCCEEEEECCCCC--CHHHH------HHHHhCcccccCCceeEEEcCC-
Confidence            44567999999985          68888866      999999  56654      5799999999999 9 999982 


Q ss_pred             CCCchHHhcccEEEEccCCCC---CCCCCHHHHHHHhHhh-cCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhh
Q psy7365         119 IRTDMTTIRRSLGVCPQYNAL---FDKLTVEEHMWFYSQL-KQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRK  194 (601)
Q Consensus       119 ~~~~~~~~~~~ig~v~Q~~~~---~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr  194 (601)
                             .++.++++||++.+   +..+|+.||+ |+... .+..   ...++.++++.+|+.+..+  +.+||||||||
T Consensus       177 -------~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~---~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qr  243 (460)
T 2npi_A          177 -------PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSGAT---LLHNKQPMVKNFGLERINE--NKDLYLECISQ  243 (460)
T ss_dssp             -------TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCC---SSCCBCCEECCCCSSSGGG--CHHHHHHHHHH
T ss_pred             -------ccCCeeeeccchhhcccccccchhhhh-cccccccCcc---hHHHHHHHHHHhCCCcccc--hhhhhHHHHHH
Confidence                   26779999999853   4567999998 65442 2211   1234567789999988766  89999999999


Q ss_pred             hhchhh--hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHh
Q psy7365         195 LDNVKV--WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFA  272 (601)
Q Consensus       195 ~~~~~~--~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  272 (601)
                      |++|++  |..+                                                                    
T Consensus       244 lalAra~rL~~~--------------------------------------------------------------------  255 (460)
T 2npi_A          244 LGQVVGQRLHLD--------------------------------------------------------------------  255 (460)
T ss_dssp             HHHHHHHHHHHC--------------------------------------------------------------------
T ss_pred             HHHHHHHHhccC--------------------------------------------------------------------
Confidence            986543  3222                                                                    


Q ss_pred             hccCCCcE----EEEec-CCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchh------HHHhcCCE-----EEE
Q psy7365         273 MSFVPAST----VILDE-PTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMD------EADLLGDR-----IAI  336 (601)
Q Consensus       273 ~~~~~~~~----liLDE-PtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~------~~~~l~Dr-----v~v  336 (601)
                           |++    +|||| ||++||+. +..+.++++++        |+|+|+++|+.+      ++..+|||     +++
T Consensus       256 -----p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--------~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~  321 (460)
T 2npi_A          256 -----PQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--------NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFF  321 (460)
T ss_dssp             -----HHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--------TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEE
T ss_pred             -----cccCcceEEEeCCcccccChh-HHHHHHHHHHh--------CCCEEEEEccCchhhhHHHHHHhcccccCCEEEE
Confidence                 478    99999 99999999 66667666542        689999999988      88899999     999


Q ss_pred             ec-CCccccccCc
Q psy7365         337 IA-AGKLQCCGSS  348 (601)
Q Consensus       337 L~-~GkIv~~G~~  348 (601)
                      |. +|+++ .+++
T Consensus       322 l~k~G~iv-~g~~  333 (460)
T 2npi_A          322 IPKLDGVS-AVDD  333 (460)
T ss_dssp             ECCCTTCC-CCCH
T ss_pred             EeCCCcEE-ECCH
Confidence            99 99988 6654

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.88  E-value=6e-23  Score=220.79  Aligned_cols=59  Identities=20%  Similarity=0.307  Sum_probs=52.7

Q ss_pred             cEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEe----cCCcccc
Q psy7365         279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII----AAGKLQC  344 (601)
Q Consensus       279 ~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL----~~GkIv~  344 (601)
                      ++|||||||+|||+.++..+.+.|+++     . +|.|||+|||+++++ ..||++++|    ++|+++.
T Consensus       317 ~~LlLDEpt~~LD~~~~~~l~~~L~~l-----~-~~~~vi~itH~~~~~-~~~d~i~~l~k~~~~G~~~~  379 (415)
T 4aby_A          317 PSVVFDEVDAGIGGAAAIAVAEQLSRL-----A-DTRQVLVVTHLAQIA-ARAHHHYKVEKQVEDGRTVS  379 (415)
T ss_dssp             SEEEESSTTTTCCHHHHHHHHHHHHHH-----T-TTSEEEEECSCHHHH-TTCSEEEEEEEEEETTEEEE
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHH-----h-CCCEEEEEeCcHHHH-hhcCeEEEEEEeccCCceEE
Confidence            899999999999999999999999987     2 489999999999776 579999999    7787644

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.83  E-value=8.1e-21  Score=202.24  Aligned_cols=62  Identities=19%  Similarity=0.192  Sum_probs=55.6

Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccc
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQC  344 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~  344 (601)
                      +|++|||||||+||||..+..++++|+++.     ..|.|||++|||+++ ...||++++|.+|+++.
T Consensus       303 ~p~~lllDEpt~~LD~~~~~~~~~~l~~l~-----~~g~tvi~itH~~~~-~~~~d~~~~l~~G~i~~  364 (365)
T 3qf7_A          303 RLDAFFIDEGFSSLDTENKEKIASVLKELE-----RLNKVIVFITHDREF-SEAFDRKLRITGGVVVN  364 (365)
T ss_dssp             TCCEEEEESCCTTSCHHHHHHHHHHHHGGG-----GSSSEEEEEESCHHH-HTTCSCEEEEETTEEC-
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHHHHHHH-----hCCCEEEEEecchHH-HHhCCEEEEEECCEEEe
Confidence            469999999999999999999999999873     358999999999998 67899999999999864

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.82  E-value=4.4e-20  Score=172.42  Aligned_cols=83  Identities=36%  Similarity=0.488  Sum_probs=76.2

Q ss_pred             cccccCcCChHHHHHHHHH------HHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhC
Q psy7365         424 SDREVRTLSGGNKRKLSTA------IALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALC  497 (601)
Q Consensus       424 ~~~~~~~LSgGqkQRl~lA------~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~  497 (601)
                      .++++.+||||||||++||      +||+.+|+++||||||+|||+.++..+++.|+++.++|+|||++|||+ ++..+|
T Consensus        51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~  129 (148)
T 1f2t_B           51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAA  129 (148)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGC
T ss_pred             ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhC
Confidence            5788999999999999886      899999999999999999999999999999999877799999999999 578899


Q ss_pred             CEEEEE--eCCE
Q psy7365         498 TKLTIM--VNGQ  507 (601)
Q Consensus       498 drv~iL--~~G~  507 (601)
                      |++++|  ++|.
T Consensus       130 d~ii~l~~~~g~  141 (148)
T 1f2t_B          130 DHVIRISLENGS  141 (148)
T ss_dssp             SEEEEEEEETTE
T ss_pred             CEEEEEEcCCCe
Confidence            999999  4553

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.80  E-value=3.3e-22  Score=196.99  Aligned_cols=140  Identities=20%  Similarity=0.201  Sum_probs=85.2

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCCCCHHHHH-HHhH----
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHM-WFYS----  153 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l-~~~~----  153 (601)
                      +|||||  |||||      .++|+|+ +|++|+|..  .++..+....++.+||+||++        .||+ .|+.    
T Consensus        28 iG~nGs--GKSTL------l~~l~Gl-~p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~--------~enl~~~~~~~~~   88 (208)
T 3b85_A           28 LGPAGS--GKTYL------AMAKAVQ-ALQSKQVSR--IILTRPAVEAGEKLGFLPGTL--------NEKIDPYLRPLHD   88 (208)
T ss_dssp             ECCTTS--STTHH------HHHHHHH-HHHTTSCSE--EEEEECSCCTTCCCCSSCC--------------CTTTHHHHH
T ss_pred             ECCCCC--CHHHH------HHHHhcC-CCcCCeeee--EEecCCchhhhcceEEecCCH--------HHHHHHHHHHHHH
Confidence            999999  67765      6799999 999999943  222211123467899999987        4444 2211    


Q ss_pred             hhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcc
Q psy7365         154 QLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRD  233 (601)
Q Consensus       154 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~  233 (601)
                      ......   ...++.++++. |+             |||||+++||||+.+                             
T Consensus        89 ~~~~~~---~~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~-----------------------------  122 (208)
T 3b85_A           89 ALRDMV---EPEVIPKLMEA-GI-------------VEVAPLAYMRGRTLN-----------------------------  122 (208)
T ss_dssp             HHTTTS---CTTHHHHHHHT-TS-------------EEEEEGGGGTTCCBC-----------------------------
T ss_pred             HHHHhc---cHHHHHHHHHh-CC-------------chHHHHHHHHHHhcC-----------------------------
Confidence            111111   12346667776 54             999999876554332                             


Q ss_pred             hhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccC
Q psy7365         234 DYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLS  313 (601)
Q Consensus       234 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~  313 (601)
                                                                  |++|||||||+|    ++..++++|+++      ..
T Consensus       123 --------------------------------------------p~lllLDEPts~----~~~~l~~~l~~l------~~  148 (208)
T 3b85_A          123 --------------------------------------------DAFVILDEAQNT----TPAQMKMFLTRL------GF  148 (208)
T ss_dssp             --------------------------------------------SEEEEECSGGGC----CHHHHHHHHTTB------CT
T ss_pred             --------------------------------------------CCEEEEeCCccc----cHHHHHHHHHHh------cC
Confidence                                                        589999999999    888889988764      24


Q ss_pred             CcEEEEEecchhHHHhcCCEEEEecCCcc
Q psy7365         314 GRTVILTTHYMDEADLLGDRIAIIAAGKL  342 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkI  342 (601)
                      |+||| +|||++++..    .....+|..
T Consensus       149 g~tii-vtHd~~~~~~----~~~~~~G~~  172 (208)
T 3b85_A          149 GSKMV-VTGDITQVDL----PGGQKSGLR  172 (208)
T ss_dssp             TCEEE-EEEC----------------CCH
T ss_pred             CCEEE-EECCHHHHhC----cCCCCCcHH
Confidence            88999 9999987654    333456654

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.80  E-value=3.4e-20  Score=193.79  Aligned_cols=59  Identities=24%  Similarity=0.256  Sum_probs=50.5

Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEE--EEecCCcc
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRI--AIIAAGKL  342 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv--~vL~~GkI  342 (601)
                      +|+++||||||++||+..+..++++|+++      ..|.|+|++||+. ++...||++  ++|.+|..
T Consensus       241 ~~~~lllDEp~~~LD~~~~~~l~~~l~~~------~~~~~vi~~tH~~-~~~~~~d~~~~v~~~~g~s  301 (322)
T 1e69_A          241 PSPFYVLDEVDSPLDDYNAERFKRLLKEN------SKHTQFIVITHNK-IVMEAADLLHGVTMVNGVS  301 (322)
T ss_dssp             CCSEEEEESCCSSCCHHHHHHHHHHHHHH------TTTSEEEEECCCT-TGGGGCSEEEEEEESSSCE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHh------cCCCeEEEEECCH-HHHhhCceEEEEEEeCCEE
Confidence            46899999999999999999999999986      2478999999996 467789987  77777764

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.79  E-value=1.2e-19  Score=193.13  Aligned_cols=85  Identities=20%  Similarity=0.350  Sum_probs=80.3

Q ss_pred             ccccCcCChHHHHHHHHHHHHh------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCC
Q psy7365         425 DREVRTLSGGNKRKLSTAIALL------GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT  498 (601)
Q Consensus       425 ~~~~~~LSgGqkQRl~lA~AL~------~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~d  498 (601)
                      ++++.+|||||||||+||+||+      ++|++|||||||+||||.++..++++|+++.++|.|||++|||+++ ...||
T Consensus       274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d  352 (365)
T 3qf7_A          274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFD  352 (365)
T ss_dssp             EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCS
T ss_pred             CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCC
Confidence            6789999999999999999999      8999999999999999999999999999998889999999999998 66799


Q ss_pred             EEEEEeCCEEEE
Q psy7365         499 KLTIMVNGQFTC  510 (601)
Q Consensus       499 rv~iL~~G~iv~  510 (601)
                      |+++|++|++++
T Consensus       353 ~~~~l~~G~i~~  364 (365)
T 3qf7_A          353 RKLRITGGVVVN  364 (365)
T ss_dssp             CEEEEETTEEC-
T ss_pred             EEEEEECCEEEe
Confidence            999999999875

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.79  E-value=1.2e-23  Score=205.87  Aligned_cols=177  Identities=10%  Similarity=-0.001  Sum_probs=112.2

Q ss_pred             cCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEc
Q psy7365          61 KLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCP  134 (601)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~  134 (601)
                      ..++.+|++.|  .++.+      +|||||  |||||      .++|+|+++...+.+.+.+.+.   ....++++||+|
T Consensus         4 ~~~~~~~~~~~--~~i~~Gei~~l~GpnGs--GKSTL------l~~l~gl~~~i~~~~~~~~~~~---~~~~~~~i~~~~   70 (207)
T 1znw_A            4 EGPDTKPTARG--QPAAVGRVVVLSGPSAV--GKSTV------VRCLRERIPNLHFSVSATTRAP---RPGEVDGVDYHF   70 (207)
T ss_dssp             -----------------CCCEEEEECSTTS--SHHHH------HHHHHHHSTTCEECCCEESSCC---CTTCCBTTTBEE
T ss_pred             CCCCCCcCCCC--CCCCCCCEEEEECCCCC--CHHHH------HHHHHhhCCceEEcccccccCC---cccccCCCeeEe
Confidence            44556778888  44444      999999  56654      5799999974444333322221   112356799999


Q ss_pred             cCCCCCCCCCHHHHHHHhH------hhcCCChHHHHHHHHHH------HHHcCCCcccCCccccCChHHHhhhhchhhhc
Q psy7365         135 QYNALFDKLTVEEHMWFYS------QLKQVPKDLAQLEISNM------IGDLGIPHKRTSLANTLSGGMQRKLDNVKVWF  202 (601)
Q Consensus       135 Q~~~~~~~~tv~e~l~~~~------~~~~~~~~~~~~~~~~~------l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~  202 (601)
                      |++.+|+.+++.+++.++.      ..++.++.+.++++.+.      ++.+|+...+++++.+||       +      
T Consensus        71 q~~~~~~~~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-------~------  137 (207)
T 1znw_A           71 IDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-------V------  137 (207)
T ss_dssp             CCHHHHHHHHHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-------E------
T ss_pred             cCHHHHHHHHhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-------E------
Confidence            9998888888888774321      33466666666666555      444444444444444444       1      


Q ss_pred             chhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEE
Q psy7365         203 NNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVI  282 (601)
Q Consensus       203 ~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~li  282 (601)
                                                          ++.                                   +|++++
T Consensus       138 ------------------------------------l~~-----------------------------------~p~~~~  146 (207)
T 1znw_A          138 ------------------------------------FLA-----------------------------------PPSWQD  146 (207)
T ss_dssp             ------------------------------------EEE-----------------------------------CSCHHH
T ss_pred             ------------------------------------EEE-----------------------------------CCCHHH
Confidence                                                222                                   257899


Q ss_pred             EecCCCCC----CHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEec
Q psy7365         283 LDEPTSGV----DPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA  338 (601)
Q Consensus       283 LDEPtsgL----D~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~  338 (601)
                      |||||+++    |+..++.+++++++++.    ..|.|+|++|||++++..+|||+++|.
T Consensus       147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~----~~g~tvi~vtHdl~~~~~~~d~i~~l~  202 (207)
T 1znw_A          147 LQARLIGRGTETADVIQRRLDTARIELAA----QGDFDKVVVNRRLESACAELVSLLVGT  202 (207)
T ss_dssp             HHHHHHTTSCSCHHHHHHHHHHHHHHHHG----GGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHhh----hccCcEEEECCCHHHHHHHHHHHHHhc
Confidence            99999998    78899999999998842    358999999999999999999999985

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.77  E-value=4e-21  Score=210.34  Aligned_cols=176  Identities=13%  Similarity=0.144  Sum_probs=132.8

Q ss_pred             chhHHHhcCCEEEEecCCccccccCcccccc-------ccc-c-ccccccccCCcccccccccCCCCcc---cCCCCCHH
Q psy7365         323 YMDEADLLGDRIAIIAAGKLQCCGSSVFLKN-------SFA-R-GYYLSLDMKSAPQKSYIGYCPQFDA---LNDRLTPR  390 (601)
Q Consensus       323 dl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~-------~~g-~-g~~igld~~~~~~~~~ig~v~Q~~~---l~~~lTv~  390 (601)
                      ++++....++++++++...   +|++++++.       ..+ + .++   +.   ..++.++|+||+..   +++.+|++
T Consensus       130 ~vsl~i~~Ge~v~IvGpnG---sGKSTLlr~L~Gl~~p~~G~~pI~v---dg---~~~~~i~~vpq~~~l~~~~~~~tv~  200 (460)
T 2npi_A          130 KIRMSNFEGPRVVIVGGSQ---TGKTSLSRTLCSYALKFNAYQPLYI---NL---DPQQPIFTVPGCISATPISDILDAQ  200 (460)
T ss_dssp             HHHHHSSSCCCEEEEESTT---SSHHHHHHHHHHTTHHHHCCCCEEE---EC---CTTSCSSSCSSCCEEEECCSCCCTT
T ss_pred             cCceEeCCCCEEEEECCCC---CCHHHHHHHHhCcccccCCceeEEE---cC---CccCCeeeeccchhhcccccccchh
Confidence            4666667889999997522   566655442       122 2 222   21   23677999999985   34567999


Q ss_pred             HHHHHhHHh-cCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHH--HhCCCCE----EEEEC-CCCCCC
Q psy7365         391 EHLEFYSRV-RNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA--LLGNTPL----IFLDE-PTSGMD  462 (601)
Q Consensus       391 E~L~~~~~~-~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~A--L~~~P~l----LlLDE-PTsGLD  462 (601)
                      ||+ |.... .+..   ..+++.++++.+|+.+..+  +.+|||||||||++|+|  |+.+|++    ||||| ||+|||
T Consensus       201 eni-~~~~~~~~~~---~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD  274 (460)
T 2npi_A          201 LPT-WGQSLTSGAT---LLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLD  274 (460)
T ss_dssp             CTT-CSCBCBSSCC---SSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSC
T ss_pred             hhh-cccccccCcc---hHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccC
Confidence            988 54332 1211   1234566788999987765  88999999999999999  9999999    99999 999999


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEccChh------HHHhhCCE-----EEEEe-CCEEEEecCHHHHH
Q psy7365         463 PGARRFLWTCIERAVSEGRCVILTSHNME------ECEALCTK-----LTIMV-NGQFTCLGSATHLK  518 (601)
Q Consensus       463 ~~~~~~i~~lL~~l~~~G~tVllsTHdl~------e~~~l~dr-----v~iL~-~G~iv~~G~~~~L~  518 (601)
                      +. ++.+.++++++   |.|++++||+.+      ++..+|||     |++|+ +|+++ .|+++++.
T Consensus       275 ~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~  337 (460)
T 2npi_A          275 EN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR  337 (460)
T ss_dssp             SS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred             hh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence            99 66666666553   789999999988      88999999     99999 99999 99988774

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.76  E-value=1.8e-20  Score=194.75  Aligned_cols=185  Identities=17%  Similarity=0.107  Sum_probs=135.4

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch-
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM-  123 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~-  123 (601)
                      ..+.|.+.++...    +++++||++.+      +|||||  ||||     ++ ++|+|+++|++|+|.+.|.++.... 
T Consensus        76 ~~~~l~~~l~~~~----~~~~l~~~~~~g~vi~lvG~nGs--GKTT-----ll-~~Lag~l~~~~g~V~l~g~d~~r~~a  143 (302)
T 3b9q_A           76 LKESVLEMLAKKN----SKTELQLGFRKPAVIMIVGVNGG--GKTT-----SL-GKLAHRLKNEGTKVLMAAGDTFRAAA  143 (302)
T ss_dssp             HHHHHHHHHCC------CCCSCCCCSSSCEEEEEECCTTS--CHHH-----HH-HHHHHHHHHTTCCEEEECCCCSCHHH
T ss_pred             HHHHHHHHhCCcc----cccccccccCCCcEEEEEcCCCC--CHHH-----HH-HHHHHHHHHcCCeEEEEeecccchhH
Confidence            4566777765432    35678887755      999999  4554     44 6899999999999999999886431 


Q ss_pred             ----HH--hcccEEEEccCCC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhh
Q psy7365         124 ----TT--IRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD  196 (601)
Q Consensus       124 ----~~--~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~  196 (601)
                          ..  .+..++|+||++. +++.++++||+.++.. .+.+        ..+++.+|+.+..++++.+||   |||++
T Consensus       144 ~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~-~~~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~  211 (302)
T 3b9q_A          144 SDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKA  211 (302)
T ss_dssp             HHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHHHH-TTCS--------EEEECCCCCSSCCHHHHHHHH---HHHHH
T ss_pred             HHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHHHH-cCCc--------chHHhcCCCCcchhHHHHHHH---HHHHH
Confidence                11  2457999999998 9999999999987643 2221        135788999888889999999   89987


Q ss_pred             chhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccC
Q psy7365         197 NVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFV  276 (601)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  276 (601)
                      +||++.                                      ++                                  
T Consensus       212 iaral~--------------------------------------~~----------------------------------  219 (302)
T 3b9q_A          212 VGKIVS--------------------------------------GA----------------------------------  219 (302)
T ss_dssp             HHTTST--------------------------------------TC----------------------------------
T ss_pred             HHHhhc--------------------------------------cC----------------------------------
Confidence            544322                                      22                                  


Q ss_pred             CCc--EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEec---------chhHHHhcCCEEEEecCCccc
Q psy7365         277 PAS--TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH---------YMDEADLLGDRIAIIAAGKLQ  343 (601)
Q Consensus       277 ~~~--~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tH---------dl~~~~~l~Drv~vL~~GkIv  343 (601)
                       |+  +|+|| ||+|||+..+.      +++.    +..|.|+|++||         .++.+...+..|.+++.|+..
T Consensus       220 -P~e~lLvLD-ptsglD~~~~~------~~~~----~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~  285 (302)
T 3b9q_A          220 -PNEILLVLD-GNTGLNMLPQA------REFN----EVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV  285 (302)
T ss_dssp             -CSEEEEEEE-GGGGGGGHHHH------HHHH----HHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred             -CCeeEEEEe-CCCCcCHHHHH------HHHH----HhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence             57  99999 99999998652      2221    124899999999         677788888999999998754

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.75  E-value=2.5e-20  Score=179.10  Aligned_cols=141  Identities=12%  Similarity=0.070  Sum_probs=92.9

Q ss_pred             cccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch-HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhc
Q psy7365          78 PLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM-TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK  156 (601)
Q Consensus        78 ~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~-~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~  156 (601)
                      -+|||||  |||||      .++|+|+++     |.++|.+..... ...++.+||++|++.      +.+++ + .. .
T Consensus         5 l~G~nGs--GKTTL------l~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~------~~~~~-~-~~-~   62 (178)
T 1ye8_A            5 ITGEPGV--GKTTL------VKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTE------GKKKI-F-SS-K   62 (178)
T ss_dssp             EECCTTS--SHHHH------HHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETT------CCEEE-E-EE-T
T ss_pred             EECCCCC--CHHHH------HHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCc------HHHHH-H-Hh-h
Confidence            3899999  56654      579999985     455665432111 134568999999862      22222 1 00 0


Q ss_pred             CCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhh-hcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchh
Q psy7365         157 QVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKV-WFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDY  235 (601)
Q Consensus       157 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~-~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~  235 (601)
                      +.+                -....++++.+||||||||+++|++ +.+                                
T Consensus        63 ~~~----------------~~~~~~~~~~~lSgG~~qr~~la~aa~~~--------------------------------   94 (178)
T 1ye8_A           63 FFT----------------SKKLVGSYGVNVQYFEELAIPILERAYRE--------------------------------   94 (178)
T ss_dssp             TCC----------------CSSEETTEEECHHHHHHHHHHHHHHHHHH--------------------------------
T ss_pred             cCC----------------ccccccccccCcCHHHHHHHHHHhhcccc--------------------------------
Confidence            110                0135788899999999999975431 000                                


Q ss_pred             hHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEec--CCCCCCHHHHHHHHHHHHHHhhhccccC
Q psy7365         236 AIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDE--PTSGVDPYSRRSIWELLIKVYYASHSLS  313 (601)
Q Consensus       236 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDE--PtsgLD~~~~~~l~~~l~~l~~~~~~~~  313 (601)
                        +++.                                   .|+++||||  ||++||+..++.+++.+.+        .
T Consensus        95 --~l~~-----------------------------------~p~llilDEigp~~~ld~~~~~~l~~~l~~--------~  129 (178)
T 1ye8_A           95 --AKKD-----------------------------------RRKVIIIDEIGKMELFSKKFRDLVRQIMHD--------P  129 (178)
T ss_dssp             --HHHC-----------------------------------TTCEEEECCCSTTGGGCHHHHHHHHHHHTC--------T
T ss_pred             --cccc-----------------------------------CCCEEEEeCCCCcccCCHHHHHHHHHHHhc--------C
Confidence              0112                                   358999999  9999999999999988853        3


Q ss_pred             CcEEEEEe---cchhHHHhcCCE
Q psy7365         314 GRTVILTT---HYMDEADLLGDR  333 (601)
Q Consensus       314 G~TVI~~t---Hdl~~~~~l~Dr  333 (601)
                      +.|+|+++   |+++++..+|+|
T Consensus       130 ~~~~i~~~H~~h~~~~~~~i~~r  152 (178)
T 1ye8_A          130 NVNVVATIPIRDVHPLVKEIRRL  152 (178)
T ss_dssp             TSEEEEECCSSCCSHHHHHHHTC
T ss_pred             CCeEEEEEccCCCchHHHHHHhc
Confidence            67788888   599999999998

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.74  E-value=2e-20  Score=191.34  Aligned_cols=110  Identities=17%  Similarity=0.178  Sum_probs=66.3

Q ss_pred             eEEeecccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCCCCHHHHHHHh
Q psy7365          73 SLEEQPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFY  152 (601)
Q Consensus        73 ~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~  152 (601)
                      +|.+.-+|||||  |||||      .++|+|+.+|++|+|.++|.++..  ...++.+|++||++.+++.+||.||+.|+
T Consensus         2 ~f~v~lvG~nGa--GKSTL------ln~L~g~~~~~~G~i~~~g~~i~~--~~~~~~i~~v~q~~~~~~~ltv~d~~~~g   71 (270)
T 3sop_A            2 DFNIMVVGQSGL--GKSTL------VNTLFKSQVSRKASSWNREEKIPK--TVEIKAIGHVIEEGGVKMKLTVIDTPGFG   71 (270)
T ss_dssp             EEEEEEEESSSS--SHHHH------HHHHHHHHC------------CCC--CCSCCEEEESCC----CCEEEEECCCC--
T ss_pred             eeEEEEECCCCC--CHHHH------HHHHhCCCCCCCCccccCCcccCc--ceeeeeeEEEeecCCCcCCceEEechhhh
Confidence            566777999999  56655      679999999999999999998733  23356899999999999999999999887


Q ss_pred             HhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365         153 SQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK  199 (601)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~  199 (601)
                      ....+..   ..+.+.+.++    ....++.+.+||||||||+++||
T Consensus        72 ~~~~~~~---~~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaR  111 (270)
T 3sop_A           72 DQINNEN---CWEPIEKYIN----EQYEKFLKEEVNIARKKRIPDTR  111 (270)
T ss_dssp             CCSBCTT---CSHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCS
T ss_pred             hhcccHH---HHHHHHHHHH----HHHHhhhHHhcCcccchhhhhhe
Confidence            6543311   1122333333    44567788999999999998654

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.74  E-value=1.5e-21  Score=210.56  Aligned_cols=186  Identities=11%  Similarity=0.038  Sum_probs=131.3

Q ss_pred             ccceeecceEEe--------------------------ecccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEcccc
Q psy7365          65 DSYGISDTSLEE--------------------------QPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHD  118 (601)
Q Consensus        65 ~~~~~~~~~~~~--------------------------~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~  118 (601)
                      +..+++|+||++                          .-+||||+  |||||      .|+|+|+++|++|+|.++|.+
T Consensus        35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGa--GKSTL------ln~L~Gl~~p~~GsI~~~g~~  106 (413)
T 1tq4_A           35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGS--GKSSF------INTLRGIGNEEEGAAKTGVVE  106 (413)
T ss_dssp             CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTS--SHHHH------HHHHHTCCTTSTTSCCCCC--
T ss_pred             CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCC--cHHHH------HHHHhCCCCccCceEEECCee
Confidence            456899999965                          23899999  56654      579999999999999999876


Q ss_pred             CCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChH--HHhhhh
Q psy7365         119 IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGG--MQRKLD  196 (601)
Q Consensus       119 ~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG--~~qr~~  196 (601)
                      ++      +  .+++||++ .++.+|+.|++.++.     +    +.++.++++.+++.+.. ..+. ||||  |+||+.
T Consensus       107 ~t------~--~~~v~q~~-~~~~ltv~D~~g~~~-----~----~~~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~  166 (413)
T 1tq4_A          107 VT------M--ERHPYKHP-NIPNVVFWDLPGIGS-----T----NFPPDTYLEKMKFYEYD-FFII-ISATRFKKNDID  166 (413)
T ss_dssp             --------C--CCEEEECS-SCTTEEEEECCCGGG-----S----SCCHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHH
T ss_pred             cc------e--eEEecccc-ccCCeeehHhhcccc-----h----HHHHHHHHHHcCCCccC-CeEE-eCCCCccHHHHH
Confidence            52      2  27899985 577889988875432     1    23467889999988653 3444 9999  999998


Q ss_pred             chhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccC
Q psy7365         197 NVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFV  276 (601)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  276 (601)
                      +|+++.+.                                    ..|                           +.+...
T Consensus       167 la~aL~~~------------------------------------~~p---------------------------~~lV~t  183 (413)
T 1tq4_A          167 IAKAISMM------------------------------------KKE---------------------------FYFVRT  183 (413)
T ss_dssp             HHHHHHHT------------------------------------TCE---------------------------EEEEEC
T ss_pred             HHHHHHhc------------------------------------CCC---------------------------eEEEEe
Confidence            66543321                                    011                           011223


Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhc--c--ccCCcEEEEEecchhH--HHhcCCEEE-EecCCc
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYAS--H--SLSGRTVILTTHYMDE--ADLLGDRIA-IIAAGK  341 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~--~--~~~G~TVI~~tHdl~~--~~~l~Drv~-vL~~Gk  341 (601)
                      .|++++|||||+|||+..+..+++.++++....  .  .....++++++|+++.  +..+||++. .+..|+
T Consensus       184 kpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          184 KVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             CHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             cCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence            468999999999999999999999998874210  0  0123678899999998  888898874 444444

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.71  E-value=3.8e-17  Score=175.48  Aligned_cols=83  Identities=18%  Similarity=0.249  Sum_probs=75.7

Q ss_pred             ccCc-CChHHHHHHHHHHHHhCCC--CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEE
Q psy7365         427 EVRT-LSGGNKRKLSTAIALLGNT--PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM  503 (601)
Q Consensus       427 ~~~~-LSgGqkQRl~lA~AL~~~P--~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL  503 (601)
                      ++.. ||||||||++||++|+.+|  ++|||||||+|||+.++..+.+.|+++. +|+|||++||+++++ .+|||+++|
T Consensus       291 ~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~-~~~d~i~~l  368 (415)
T 4aby_A          291 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIA-ARAHHHYKV  368 (415)
T ss_dssp             BGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHH-TTCSEEEEE
T ss_pred             chhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHH-hhcCeEEEE
Confidence            3444 5999999999999999999  9999999999999999999999999997 689999999999776 579999999


Q ss_pred             ----eCCEEEEe
Q psy7365         504 ----VNGQFTCL  511 (601)
Q Consensus       504 ----~~G~iv~~  511 (601)
                          ++|+++..
T Consensus       369 ~k~~~~G~~~~~  380 (415)
T 4aby_A          369 EKQVEDGRTVSH  380 (415)
T ss_dssp             EEEEETTEEEEE
T ss_pred             EEeccCCceEEE
Confidence                89988754

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.70  E-value=3.8e-19  Score=169.01  Aligned_cols=47  Identities=9%  Similarity=0.104  Sum_probs=40.5

Q ss_pred             CcEEEEecCCCCCCHH----------------HHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHh
Q psy7365         278 ASTVILDEPTSGVDPY----------------SRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADL  329 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~----------------~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~  329 (601)
                      |++++|||||++||+.                .+..+++.|+++.     .+|.|+|++|||++++..
T Consensus       102 p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~-----~~g~tvi~vtH~~~~~~~  164 (171)
T 4gp7_A          102 PVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQ-----REGFRYVYILNSPEEVEE  164 (171)
T ss_dssp             EEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHH-----HHTCSEEEEECSHHHHHH
T ss_pred             EEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHH-----hcCCcEEEEeCCHHHhhh
Confidence            5899999999999999                6688888887763     249999999999999875

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.70  E-value=6.8e-19  Score=186.76  Aligned_cols=184  Identities=16%  Similarity=0.105  Sum_probs=133.6

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch--
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM--  123 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~--  123 (601)
                      .+.|.+.++...    .++.+||++.+      +|||||  ||||     ++ ++|+|+++|++|+|.+.|.++....  
T Consensus       134 ~~~l~~~l~~~~----~~~~l~l~~~~g~vi~lvG~nGs--GKTT-----ll-~~Lag~l~~~~G~V~l~g~D~~r~~a~  201 (359)
T 2og2_A          134 KESVLEMLAKKN----SKTELQLGFRKPAVIMIVGVNGG--GKTT-----SL-GKLAHRLKNEGTKVLMAAGDTFRAAAS  201 (359)
T ss_dssp             HHHHHHHHCCC-------CSCCCCSSSSEEEEEECCTTS--CHHH-----HH-HHHHHHHHHTTCCEEEECCCCSCHHHH
T ss_pred             HHHHHHHhCCcc----cCCCcceecCCCeEEEEEcCCCC--hHHH-----HH-HHHHhhccccCCEEEEecccccccchh
Confidence            445555553321    13467777654      999999  4554     44 6899999999999999999986431  


Q ss_pred             ---H--HhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhc
Q psy7365         124 ---T--TIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDN  197 (601)
Q Consensus       124 ---~--~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~  197 (601)
                         .  ..+..++|+||++. +++..++.|++.++.. .+.+        ..+++.+|+.+..++++.+||   |||+++
T Consensus       202 eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~-~~~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~i  269 (359)
T 2og2_A          202 DQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAV  269 (359)
T ss_dssp             HHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHHHH-TTCS--------EEEEECCCCSSCCHHHHHHHH---HHHHHH
T ss_pred             HHHHHHHHhcCeEEEEecccccChhhhHHHHHHHHHh-CCCH--------HHHHHhcCCChhhhhHHHHHH---HHHHHH
Confidence               1  12457999999998 9999999999987643 1221        135778999888889999999   899865


Q ss_pred             hhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCC
Q psy7365         198 VKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVP  277 (601)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  277 (601)
                      ||++                                      .++                                   
T Consensus       270 aral--------------------------------------~~~-----------------------------------  276 (359)
T 2og2_A          270 GKIV--------------------------------------SGA-----------------------------------  276 (359)
T ss_dssp             HHHS--------------------------------------TTC-----------------------------------
T ss_pred             HHHH--------------------------------------hcC-----------------------------------
Confidence            4332                                      222                                   


Q ss_pred             Cc--EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEec---------chhHHHhcCCEEEEecCCccc
Q psy7365         278 AS--TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTH---------YMDEADLLGDRIAIIAAGKLQ  343 (601)
Q Consensus       278 ~~--~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tH---------dl~~~~~l~Drv~vL~~GkIv  343 (601)
                      |+  +|+|| ||+|||+..+.      +++.    +..|.|+|++||         .++.+...+..|.+++.|+..
T Consensus       277 P~e~lLvLD-pttglD~~~~~------~~~~----~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~  342 (359)
T 2og2_A          277 PNEILLVLD-GNTGLNMLPQA------REFN----EVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV  342 (359)
T ss_dssp             CSEEEEEEE-GGGGGGGHHHH------HHHH----HHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred             CCceEEEEc-CCCCCCHHHHH------HHHH----HhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence            57  99999 99999998653      2221    124899999999         567777888999999988754

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.66  E-value=2.3e-16  Score=147.15  Aligned_cols=56  Identities=30%  Similarity=0.343  Sum_probs=49.9

Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEec
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA  338 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~  338 (601)
                      +|+++||||||+|||+.++..+++.|.++.     ..|+|||++||++ +....||++++|+
T Consensus        81 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-----~~~~tiiivsH~~-~~~~~~d~ii~l~  136 (148)
T 1f2t_B           81 EISLLILDEPTPYLDEERRRKLITIMERYL-----KKIPQVILVSHDE-ELKDAADHVIRIS  136 (148)
T ss_dssp             SCSEEEEESCSCTTCHHHHHHHHHHHHHTG-----GGSSEEEEEESCG-GGGGGCSEEEEEE
T ss_pred             CCCEEEEECCCccCCHHHHHHHHHHHHHHH-----ccCCEEEEEEChH-HHHHhCCEEEEEE
Confidence            368999999999999999999999999873     3489999999999 5678999999994

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.66  E-value=1e-19  Score=198.12  Aligned_cols=189  Identities=12%  Similarity=0.043  Sum_probs=140.1

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccc---c
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDH---D  118 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~---~  118 (601)
                      +...++++++.|++   +..+|+++ |++.+      +|||||  |||||      .++|+|+.+|++|.|.++|.   +
T Consensus       130 ~~l~~~~v~~~~~t---g~~vld~v-l~i~~Gq~~~IvG~sGs--GKSTL------l~~Iag~~~~~~G~i~~~G~r~~e  197 (438)
T 2dpy_A          130 NPLQRTPIEHVLDT---GVRAINAL-LTVGRGQRMGLFAGSGV--GKSVL------LGMMARYTRADVIVVGLIGERGRE  197 (438)
T ss_dssp             CTTTSCCCCSBCCC---SCHHHHHH-SCCBTTCEEEEEECTTS--SHHHH------HHHHHHHSCCSEEEEEEESCCHHH
T ss_pred             CceEEeccceecCC---CceEEeee-EEecCCCEEEEECCCCC--CHHHH------HHHHhcccCCCeEEEEEeceecHH
Confidence            45669999999853   35699999 99988      999999  56654      67999999999999999998   4


Q ss_pred             CCCc------hHHhcccEEEEccC-CCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHH
Q psy7365         119 IRTD------MTTIRRSLGVCPQY-NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGM  191 (601)
Q Consensus       119 ~~~~------~~~~~~~ig~v~Q~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~  191 (601)
                      +...      ....++.++|+||+ ..++++++|.+|+.+.++.++...    .++         .... ..+..||+||
T Consensus       198 v~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~----~~v---------~~~l-d~l~~lS~g~  263 (438)
T 2dpy_A          198 VKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG----QHV---------LLIM-DSLTRYAMAQ  263 (438)
T ss_dssp             HHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT----CEE---------EEEE-ECHHHHHHHH
T ss_pred             HHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC----CCH---------HHHH-HhHHHHHHHH
Confidence            4321      23467789999996 457889999999998776543100    011         1111 2377899999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                       ||+++|                                         +.+                             
T Consensus       264 -qrvslA-----------------------------------------l~~-----------------------------  272 (438)
T 2dpy_A          264 -REIALA-----------------------------------------IGE-----------------------------  272 (438)
T ss_dssp             -HHHHHH-----------------------------------------TTC-----------------------------
T ss_pred             -HHHHHH-----------------------------------------hCC-----------------------------
Confidence             897631                                         122                             


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCc-----EEEEEecchhHHHhcCCEEEEecCCcccccc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGR-----TVILTTHYMDEADLLGDRIAIIAAGKLQCCG  346 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~-----TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G  346 (601)
                            |++      |+||||..+..+.+++.+++... ...|.     ||+++|||++  ..+||++++|.+|+++.++
T Consensus       273 ------p~~------t~glD~~~~~~l~~ll~r~~~~~-~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~  337 (438)
T 2dpy_A          273 ------PPA------TKGYPPSVFAKLPALVERAGNGI-HGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLSR  337 (438)
T ss_dssp             ------CCC------SSSCCTTHHHHHHHHHTTCSCCS-TTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEECH
T ss_pred             ------Ccc------cccCCHHHHHHHHHHHHHHHhcc-CCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEEeC
Confidence                  344      99999999999999998873100 01364     9999999999  7789999999999998776


Q ss_pred             Cc
Q psy7365         347 SS  348 (601)
Q Consensus       347 ~~  348 (601)
                      +.
T Consensus       338 ~~  339 (438)
T 2dpy_A          338 RL  339 (438)
T ss_dssp             HH
T ss_pred             CH
Confidence            43

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.65  E-value=1.2e-16  Score=168.15  Aligned_cols=83  Identities=33%  Similarity=0.432  Sum_probs=75.2

Q ss_pred             CcccccccCcCChHHHH------HHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHH
Q psy7365         421 GHYSDREVRTLSGGNKR------KLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECE  494 (601)
Q Consensus       421 ~~~~~~~~~~LSgGqkQ------Rl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~  494 (601)
                      .+..++++.+|||||||      |+++|++++.+|++|||||||+||||..+..++++|+++.++|.|||++|||. ++.
T Consensus       239 ~~~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~-~~~  317 (339)
T 3qkt_A          239 WEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELK  317 (339)
T ss_dssp             ETTEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGG
T ss_pred             cccCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH-HHH
Confidence            44567899999999999      67888889999999999999999999999999999999877789999999995 567


Q ss_pred             hhCCEEEEEe
Q psy7365         495 ALCTKLTIMV  504 (601)
Q Consensus       495 ~l~drv~iL~  504 (601)
                      .+|||+++|+
T Consensus       318 ~~~d~~~~l~  327 (339)
T 3qkt_A          318 DAADHVIRIS  327 (339)
T ss_dssp             GGCSEEEEEE
T ss_pred             HhCCEEEEEE
Confidence            8999999985

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.64  E-value=2.1e-20  Score=184.77  Aligned_cols=177  Identities=14%  Similarity=0.073  Sum_probs=107.1

Q ss_pred             ceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc--hHHhcccEEEEccCCC
Q psy7365          67 YGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD--MTTIRRSLGVCPQYNA  138 (601)
Q Consensus        67 ~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~--~~~~~~~ig~v~Q~~~  138 (601)
                      ..|+|+||++.+      +|||||  |||||      .++|+|++ |  |+|.+ |.++.+.  ....+++++|+||++.
T Consensus        11 ~~l~~isl~i~~G~~~~lvGpsGs--GKSTL------l~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~   78 (218)
T 1z6g_A           11 SSGLVPRGSMNNIYPLVICGPSGV--GKGTL------IKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKT   78 (218)
T ss_dssp             -----------CCCCEEEECSTTS--SHHHH------HHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHH
T ss_pred             ccccCCceecCCCCEEEEECCCCC--CHHHH------HHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHH
Confidence            368999999977      999999  56654      57999999 5  99999 8776432  1223568999999987


Q ss_pred             CCCCCCH-HHHHH---HhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhc-----hhhhcchhhHHH
Q psy7365         139 LFDKLTV-EEHMW---FYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDN-----VKVWFNNKAWIA  209 (601)
Q Consensus       139 ~~~~~tv-~e~l~---~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~-----~~~~~~~~~~~a  209 (601)
                      +|+.++. .+++.   |....+|.+.    ..++++++...+. ..   ..+|||||+||+++     ++++        
T Consensus        79 ~~~~~~~~~~~l~~~~~~~~~~g~~~----~~i~~~l~~~~~~-il---~~~lsggq~qR~~i~~~~~~~~l--------  142 (218)
T 1z6g_A           79 IFEDKLKNEDFLEYDNYANNFYGTLK----SEYDKAKEQNKIC-LF---EMNINGVKQLKKSTHIKNALYIF--------  142 (218)
T ss_dssp             HHHHHHHTTCEEEEEEETTEEEEEEH----HHHHHHHHTTCEE-EE---EECHHHHHHHTTCSSCCSCEEEE--------
T ss_pred             HHHHhhhccchhhhhhcccccCCCcH----HHHHHHHhCCCcE-EE---EecHHHHHHHHHHhcCCCcEEEE--------
Confidence            7765431 11221   1122344443    2356666664432 11   26899999999875     2221        


Q ss_pred             HHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCC
Q psy7365         210 AVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSG  289 (601)
Q Consensus       210 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsg  289 (601)
                                                    +.                                   +|++++|||||++
T Consensus       143 ------------------------------l~-----------------------------------~~~~~~Lde~~~~  157 (218)
T 1z6g_A          143 ------------------------------IK-----------------------------------PPSTDVLLSRLLT  157 (218)
T ss_dssp             ------------------------------EE-----------------------------------CSCHHHHHHHHHH
T ss_pred             ------------------------------Ee-----------------------------------CcCHHHHHHHHHh
Confidence                                          11                                   3578899999999


Q ss_pred             CCHHHHHHHHHHHHHHhhhcc-c-cCCcEEEEEecchhHHHhcCCEEEE
Q psy7365         290 VDPYSRRSIWELLIKVYYASH-S-LSGRTVILTTHYMDEADLLGDRIAI  336 (601)
Q Consensus       290 LD~~~~~~l~~~l~~l~~~~~-~-~~G~TVI~~tHdl~~~~~l~Drv~v  336 (601)
                      +|..+...+.+.+.++..... . ..+.+.|+++|+++++...+++++.
T Consensus       158 ~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~  206 (218)
T 1z6g_A          158 RNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLL  206 (218)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHH
Confidence            999888888877766532100 0 0346677888888888877766543

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.63  E-value=1.7e-18  Score=180.65  Aligned_cols=96  Identities=10%  Similarity=0.090  Sum_probs=74.4

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCC
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV  158 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~  158 (601)
                      +|||||  ||||     + .++|+|+++|+.|.                +.+++|||++.+++. |+.||+.+.. .+|.
T Consensus        96 ~G~sGs--GKST-----L-~~~L~gll~~~~G~----------------~~v~~v~qd~~~~~~-t~~e~~~~~~-~~g~  149 (312)
T 3aez_A           96 AGSVAV--GKST-----T-ARVLQALLARWDHH----------------PRVDLVTTDGFLYPN-AELQRRNLMH-RKGF  149 (312)
T ss_dssp             ECCTTS--CHHH-----H-HHHHHHHHHTSTTC----------------CCEEEEEGGGGBCCH-HHHHHTTCTT-CTTS
T ss_pred             ECCCCc--hHHH-----H-HHHHHhhccccCCC----------------CeEEEEecCccCCcc-cHHHHHHHHH-hcCC
Confidence            999999  4555     4 46999999997653                468999999988888 9999986532 2455


Q ss_pred             ChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhh
Q psy7365         159 PKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVW  201 (601)
Q Consensus       159 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~  201 (601)
                      +......++.+.++.++ .+..+.++.+|||||+||+++|+++
T Consensus       150 ~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al  191 (312)
T 3aez_A          150 PESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQV  191 (312)
T ss_dssp             GGGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEE
T ss_pred             ChHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHh
Confidence            54444566788899998 6666788999999999999876543

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.63  E-value=3.9e-16  Score=173.28  Aligned_cols=81  Identities=16%  Similarity=0.195  Sum_probs=75.3

Q ss_pred             ccccCcC-ChHHHHHHHHHHHHhCCC--CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEE
Q psy7365         425 DREVRTL-SGGNKRKLSTAIALLGNT--PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLT  501 (601)
Q Consensus       425 ~~~~~~L-SgGqkQRl~lA~AL~~~P--~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~  501 (601)
                      .+++.+| ||||||||+||+||+.+|  ++|||||||+|||+.++..++++|+++++ |.|||++||+++.+. +|||++
T Consensus       391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~-~~d~~~  468 (517)
T 4ad8_A          391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAA-RAHHHY  468 (517)
T ss_dssp             CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHH-HSSEEE
T ss_pred             cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-hCCEEE
Confidence            3678888 999999999999999999  99999999999999999999999999987 899999999999876 699999


Q ss_pred             EEeCCE
Q psy7365         502 IMVNGQ  507 (601)
Q Consensus       502 iL~~G~  507 (601)
                      +|++|.
T Consensus       469 ~~~~~~  474 (517)
T 4ad8_A          469 KVEKQV  474 (517)
T ss_dssp             EEECCE
T ss_pred             EEeccc
Confidence            997653

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.63  E-value=8e-16  Score=160.65  Aligned_cols=84  Identities=25%  Similarity=0.296  Sum_probs=74.6

Q ss_pred             cccccccCcCChHHHHHHHHHHHHh----CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhC
Q psy7365         422 HYSDREVRTLSGGNKRKLSTAIALL----GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALC  497 (601)
Q Consensus       422 ~~~~~~~~~LSgGqkQRl~lA~AL~----~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~  497 (601)
                      +..++++.+||+|||||++||++|+    .+|++|||||||++||+..++.++++|+++. +|+|||++||++ ++..+|
T Consensus       211 ~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~-~~~~~~  288 (322)
T 1e69_A          211 GRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK-IVMEAA  288 (322)
T ss_dssp             TSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT-TGGGGC
T ss_pred             ccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH-HHHhhC
Confidence            4467788999999999999999997    6899999999999999999999999999984 589999999996 467789


Q ss_pred             CEE--EEEeCCE
Q psy7365         498 TKL--TIMVNGQ  507 (601)
Q Consensus       498 drv--~iL~~G~  507 (601)
                      |++  ++|.+|.
T Consensus       289 d~~~~v~~~~g~  300 (322)
T 1e69_A          289 DLLHGVTMVNGV  300 (322)
T ss_dssp             SEEEEEEESSSC
T ss_pred             ceEEEEEEeCCE
Confidence            987  7777774

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.62  E-value=2.5e-19  Score=186.08  Aligned_cols=156  Identities=9%  Similarity=0.050  Sum_probs=111.1

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM  123 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~  123 (601)
                      +.+++|++.|+     .++|+|+||++.+      +|||||  |||||      .++|+|++   +|+|.          
T Consensus       102 i~~~~vs~~y~-----~~vL~~vsl~i~~Ge~vaIvGpsGs--GKSTL------l~lL~gl~---~G~I~----------  155 (305)
T 2v9p_A          102 FNYQNIELITF-----INALKLWLKGIPKKNCLAFIGPPNT--GKSML------CNSLIHFL---GGSVL----------  155 (305)
T ss_dssp             HHHTTCCHHHH-----HHHHHHHHHTCTTCSEEEEECSSSS--SHHHH------HHHHHHHH---TCEEE----------
T ss_pred             EEEEEEEEEcC-----hhhhccceEEecCCCEEEEECCCCC--cHHHH------HHHHhhhc---CceEE----------
Confidence            56999999986     4699999999988      999999  56655      56999998   79883          


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHH-HHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhc
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEE-HMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWF  202 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e-~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~  202 (601)
                             ++++|++.+|. .|+++ |+.|+..   .+ +    .+.+.++.+ |+...+  ..+||||||||   |||++
T Consensus       156 -------~~v~q~~~lf~-~ti~~~ni~~~~~---~~-~----~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll  213 (305)
T 2v9p_A          156 -------SFANHKSHFWL-ASLADTRAALVDD---AT-H----ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQI  213 (305)
T ss_dssp             -------CGGGTTSGGGG-GGGTTCSCEEEEE---EC-H----HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEE
T ss_pred             -------EEecCcccccc-ccHHHHhhccCcc---cc-H----HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHh
Confidence                   45788887775 36776 7765421   11 1    344556654 444444  78999999999   55543


Q ss_pred             chhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEE
Q psy7365         203 NNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVI  282 (601)
Q Consensus       203 ~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~li  282 (601)
                      .+                                                                         |++||
T Consensus       214 ~~-------------------------------------------------------------------------p~iLl  220 (305)
T 2v9p_A          214 KA-------------------------------------------------------------------------PPLLV  220 (305)
T ss_dssp             CC-------------------------------------------------------------------------CCEEE
T ss_pred             CC-------------------------------------------------------------------------CCEEE
Confidence            33                                                                         47888


Q ss_pred             EecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc
Q psy7365         283 LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  351 (601)
Q Consensus       283 LDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL  351 (601)
                          |++||+.+...+..                   +||+++.+ ..||+| +|.+|+++..|+...+
T Consensus       221 ----Ts~LD~~~~~~i~~-------------------ltH~~~~~-~~aD~i-vl~~G~iv~~g~~~el  264 (305)
T 2v9p_A          221 ----TSNIDVQAEDRYLY-------------------LHSRVQTF-RFEQPC-TDESGEQPFNITDADW  264 (305)
T ss_dssp             ----EESSCSTTCGGGGG-------------------GTTTEEEE-ECCCCC-CCC---CCCCCCHHHH
T ss_pred             ----ECCCCHHHHHHHHH-------------------HhCCHHHH-HhCCEE-EEeCCEEEEeCCHHHH
Confidence                99999998877641                   16887654 589999 9999999887765433

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.61  E-value=2.1e-15  Score=144.21  Aligned_cols=80  Identities=16%  Similarity=0.182  Sum_probs=69.7

Q ss_pred             ccccccCcCChHHHHHHHHHHHHh----CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCC
Q psy7365         423 YSDREVRTLSGGNKRKLSTAIALL----GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT  498 (601)
Q Consensus       423 ~~~~~~~~LSgGqkQRl~lA~AL~----~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~d  498 (601)
                      ...+++..||||||||++||++++    ..|+++||||||+|||+.+++.++++|+++.+ +.++|++||+... ..+||
T Consensus        57 ~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~~-~~~ad  134 (173)
T 3kta_B           57 KDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDVM-MANAD  134 (173)
T ss_dssp             SSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHHH-HTTCS
T ss_pred             ccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHHH-HHhCC
Confidence            345678899999999999999997    45799999999999999999999999999864 4689999999765 57899


Q ss_pred             EEEEEe
Q psy7365         499 KLTIMV  504 (601)
Q Consensus       499 rv~iL~  504 (601)
                      +++.+.
T Consensus       135 ~i~~v~  140 (173)
T 3kta_B          135 KIIGVS  140 (173)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            998654

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.60  E-value=5.1e-16  Score=164.77  Aligned_cols=86  Identities=20%  Similarity=0.289  Sum_probs=79.2

Q ss_pred             ccccC-cCChHHHHHHHHHHHHh---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHH
Q psy7365         425 DREVR-TLSGGNKRKLSTAIALL---------GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECE  494 (601)
Q Consensus       425 ~~~~~-~LSgGqkQRl~lA~AL~---------~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~  494 (601)
                      ++++. .||||||||++||++|+         .+|++|||||||++||+..+..+++.|.++.   .|+|++||. ++  
T Consensus       259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~--  332 (359)
T 2o5v_A          259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP--  332 (359)
T ss_dssp             TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--
T ss_pred             CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--
Confidence            56787 89999999999999999         8999999999999999999999999998863   799999994 54  


Q ss_pred             hhCCEEEEEeCCEEEEecCHHHH
Q psy7365         495 ALCTKLTIMVNGQFTCLGSATHL  517 (601)
Q Consensus       495 ~l~drv~iL~~G~iv~~G~~~~L  517 (601)
                       .||++++|++|+++..|+++++
T Consensus       333 -~~~~i~~l~~G~i~~~g~~~~~  354 (359)
T 2o5v_A          333 -GAALTLRAQAGRFTPVADEEMQ  354 (359)
T ss_dssp             -TCSEEEEEETTEEEECCCTTTS
T ss_pred             -cCCEEEEEECCEEEecCCHHHH
Confidence             8999999999999999999876

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.59  E-value=5.6e-17  Score=170.34  Aligned_cols=127  Identities=15%  Similarity=0.096  Sum_probs=94.3

Q ss_pred             eeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCC
Q psy7365          68 GISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFD  141 (601)
Q Consensus        68 ~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~  141 (601)
                      +++++||.+.+      +|||||  |||||      .++|+|+++|++|.|+++|.+... ....++.+++++|      
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~Gs--GKTTl------l~~l~g~~~~~~g~i~i~~~~e~~-~~~~~~~i~~~~g------  224 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGS--GKTTY------IKSIMEFIPKEERIISIEDTEEIV-FKHHKNYTQLFFG------  224 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTS--CHHHH------HHHGGGGSCTTSCEEEEESSCCCC-CSSCSSEEEEECB------
T ss_pred             HHhhhhhhccCCCEEEEECCCCC--CHHHH------HHHHhCCCcCCCcEEEECCeeccc-cccchhEEEEEeC------
Confidence            78999999876      999999  56554      579999999999999999975321 1113445666541      


Q ss_pred             CCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhh
Q psy7365         142 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVI  221 (601)
Q Consensus       142 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~  221 (601)
                                                                     |||+||++++++|                    
T Consensus       225 -----------------------------------------------gg~~~r~~la~aL--------------------  237 (330)
T 2pt7_A          225 -----------------------------------------------GNITSADCLKSCL--------------------  237 (330)
T ss_dssp             -----------------------------------------------TTBCHHHHHHHHT--------------------
T ss_pred             -----------------------------------------------CChhHHHHHHHHh--------------------
Confidence                                                           8999998753322                    


Q ss_pred             HhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHH
Q psy7365         222 LRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWEL  301 (601)
Q Consensus       222 ~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~  301 (601)
                                        ..                                   .|++++|||||+.       ++++.
T Consensus       238 ------------------~~-----------------------------------~p~ilildE~~~~-------e~~~~  257 (330)
T 2pt7_A          238 ------------------RM-----------------------------------RPDRIILGELRSS-------EAYDF  257 (330)
T ss_dssp             ------------------TS-----------------------------------CCSEEEECCCCST-------HHHHH
T ss_pred             ------------------hh-----------------------------------CCCEEEEcCCChH-------HHHHH
Confidence                              22                                   2589999999982       35667


Q ss_pred             HHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcc
Q psy7365         302 LIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKL  342 (601)
Q Consensus       302 l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkI  342 (601)
                      |+.+.     ..+.|+++++|+.+ +...|||+++|.+|..
T Consensus       258 l~~~~-----~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~  292 (330)
T 2pt7_A          258 YNVLC-----SGHKGTLTTLHAGS-SEEAFIRLANMSSSNS  292 (330)
T ss_dssp             HHHHH-----TTCCCEEEEEECSS-HHHHHHHHHHHHHTSG
T ss_pred             HHHHh-----cCCCEEEEEEcccH-HHHHhhhheehhcCCc
Confidence            76652     23458999999999 7889999999988864

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.56  E-value=5.7e-17  Score=168.13  Aligned_cols=123  Identities=17%  Similarity=0.068  Sum_probs=52.5

Q ss_pred             cccccccccCCCccceeecceEEeecccCCCCCCCccccchhhhHHHhccCC-CCCCeeEEEEccccCCCchHHhcccEE
Q psy7365          53 ESLSENRDKLGIDSYGISDTSLEEQPLGPSGITLGLHTLGLEFVSRSMLMGM-LPVSSGTAKIYDHDIRTDMTTIRRSLG  131 (601)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl-~~~~~G~v~~~g~~~~~~~~~~~~~ig  131 (601)
                      .+|++.|++.    .+++|++|.+.-+||||+  |||||      .++|.|. +.|++| +.++|.++....  ..+.++
T Consensus         2 ~~l~~~~~~~----~~l~~~~~~I~lvG~nG~--GKSTL------l~~L~g~~~~~~~g-i~~~g~~~~~t~--~~~~~~   66 (301)
T 2qnr_A            2 SNLPNQVHRK----SVKKGFEFTLMVVGESGL--GKSTL------INSLFLTDLYPERV-ISGAAEKIERTV--QIEAST   66 (301)
T ss_dssp             --------------------CEEEEEEEETTS--SHHHH------HHHHHC---------------------------CE
T ss_pred             CCCcceECCE----EEEcCCCEEEEEECCCCC--CHHHH------HHHHhCCCccCCCC-cccCCcccCCcc--eEeeEE
Confidence            3678888653    499999999999999999  56654      5688898 889999 888888764321  135689


Q ss_pred             EEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhch
Q psy7365         132 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNV  198 (601)
Q Consensus       132 ~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~  198 (601)
                      +++|.+.++..+|++|+..|+.....  .+..+..+..      +.+..++++.++|||||||+.+|
T Consensus        67 ~~~q~~~~~~~ltv~Dt~g~~~~~~~--~e~~~~l~~~------l~~~~~~~~~~~sgg~rqrv~~a  125 (301)
T 2qnr_A           67 VEIEERGVKLRLTVVDTPGYGDAINC--RDCFKTIISY------IDEQFERYLHDESGLNRRHIIDN  125 (301)
T ss_dssp             EEEC---CCEEEEEEEEC-------------CTTHHHH------HHHHHHHHHHHHTSSCCTTCCCC
T ss_pred             EEecCCCcccCcchhhhhhhhhhcCc--HHHHHHHHHH------HHHHHHHHHHHhCHHhhhhhhhh
Confidence            99999888888999998877543210  0100111111      12334678999999999998753

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.54  E-value=1.7e-16  Score=156.15  Aligned_cols=133  Identities=10%  Similarity=0.148  Sum_probs=79.9

Q ss_pred             hcCCEEEEecCCccccccCcccccc------ccccccccccccCCcccccccccCCCCcccCCCCCHHHHH-HHh----H
Q psy7365         329 LLGDRIAIIAAGKLQCCGSSVFLKN------SFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHL-EFY----S  397 (601)
Q Consensus       329 ~l~Drv~vL~~GkIv~~G~~~lLk~------~~g~g~~igld~~~~~~~~~ig~v~Q~~~l~~~lTv~E~L-~~~----~  397 (601)
                      .-++.+++++...   +|++++++.      ..|..............++.+||+||++        +||+ .+.    .
T Consensus        20 ~~Ge~~~liG~nG---sGKSTLl~~l~Gl~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~--------~enl~~~~~~~~~   88 (208)
T 3b85_A           20 DTNTIVFGLGPAG---SGKTYLAMAKAVQALQSKQVSRIILTRPAVEAGEKLGFLPGTL--------NEKIDPYLRPLHD   88 (208)
T ss_dssp             HHCSEEEEECCTT---SSTTHHHHHHHHHHHHTTSCSEEEEEECSCCTTCCCCSSCC--------------CTTTHHHHH
T ss_pred             cCCCEEEEECCCC---CCHHHHHHHHhcCCCcCCeeeeEEecCCchhhhcceEEecCCH--------HHHHHHHHHHHHH
Confidence            4577778886422   566654432      1222211001111122456799999986        3333 221    1


Q ss_pred             HhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q psy7365         398 RVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAV  477 (601)
Q Consensus       398 ~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~  477 (601)
                      .+.....   .++++++++. ++             |||||++||+||+.+|++|||||||+|    ++..++++|+++ 
T Consensus        89 ~~~~~~~---~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-  146 (208)
T 3b85_A           89 ALRDMVE---PEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-  146 (208)
T ss_dssp             HHTTTSC---TTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-
T ss_pred             HHHHhcc---HHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-
Confidence            1111111   2345666765 44             999999999999999999999999999    899999999998 


Q ss_pred             hCCcEEEEEccChhHHHh
Q psy7365         478 SEGRCVILTSHNMEECEA  495 (601)
Q Consensus       478 ~~G~tVllsTHdl~e~~~  495 (601)
                      ++|+||| +|||+++++.
T Consensus       147 ~~g~tii-vtHd~~~~~~  163 (208)
T 3b85_A          147 GFGSKMV-VTGDITQVDL  163 (208)
T ss_dssp             CTTCEEE-EEEC------
T ss_pred             cCCCEEE-EECCHHHHhC
Confidence            6789999 9999998764

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.53  E-value=1.4e-16  Score=168.42  Aligned_cols=187  Identities=17%  Similarity=0.134  Sum_probs=126.8

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT  121 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~  121 (601)
                      ++...+++++.|++   +..+|+++ |++.+      +|||||  |||||      .++|+|+.+|++|.|.+.|.+...
T Consensus        44 ~~i~~~~l~~~~~t---g~~ald~l-l~i~~Gq~~gIiG~nGa--GKTTL------l~~I~g~~~~~~g~i~~~G~~~~e  111 (347)
T 2obl_A           44 DPLLRQVIDQPFIL---GVRAIDGL-LTCGIGQRIGIFAGSGV--GKSTL------LGMICNGASADIIVLALIGERGRE  111 (347)
T ss_dssp             CSTTCCCCCSEECC---SCHHHHHH-SCEETTCEEEEEECTTS--SHHHH------HHHHHHHSCCSEEEEEEESCCHHH
T ss_pred             CCeeecccceecCC---CCEEEEee-eeecCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCEEEEEEecccHHH
Confidence            35668999999862   35699999 99988      999999  56654      679999999999999999975211


Q ss_pred             --------chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCc-ccCCccccCChHHH
Q psy7365         122 --------DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPH-KRTSLANTLSGGMQ  192 (601)
Q Consensus       122 --------~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~  192 (601)
                              .....++.+++++|.+.     ...+.+.......         .+.+.+...|-.- ..-..+..||+|| 
T Consensus       112 v~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~~~---------~~ae~~~~~~~~vl~~ld~~~~lS~g~-  176 (347)
T 2obl_A          112 VNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFTAT---------TIAEYFRDQGKNVLLMMDSVTRYARAA-  176 (347)
T ss_dssp             HHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHHHH---------HHHHHHHTTTCEEEEEEETHHHHHHHH-
T ss_pred             HHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHHHH---------HHHHHHHhccccHHHHHhhHHHHHHHH-
Confidence                    11234566888888632     2233322111100         0111111112000 0114688999999 


Q ss_pred             hhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHh
Q psy7365         193 RKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFA  272 (601)
Q Consensus       193 qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  272 (601)
                      ||+++|                                         +++                              
T Consensus       177 r~v~la-----------------------------------------l~~------------------------------  185 (347)
T 2obl_A          177 RDVGLA-----------------------------------------SGE------------------------------  185 (347)
T ss_dssp             HHHHHH-----------------------------------------TTC------------------------------
T ss_pred             HHHHHH-----------------------------------------cCC------------------------------
Confidence            887631                                         122                              


Q ss_pred             hccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCc-----EEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         273 MSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGR-----TVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       273 ~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~-----TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                           |++      |+||||..+..+++++.++..   ...|.     ||+++|||++  ..+||++++|.+|+++.+++
T Consensus       186 -----p~~------t~Gldp~~~~~l~~ller~~~---~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~~  249 (347)
T 2obl_A          186 -----PDV------RGGFPPSVFSSLPKLLERAGP---APKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTRE  249 (347)
T ss_dssp             -----CCC------BTTBCHHHHHHHHHHHTTCEE---CSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCHH
T ss_pred             -----CCc------ccCCCHHHHHHHHHHHHHHhC---CCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeCC
Confidence                 233      899999999999999988621   03477     8999999999  77899999999999988764


Q ss_pred             c
Q psy7365         348 S  348 (601)
Q Consensus       348 ~  348 (601)
                      .
T Consensus       250 l  250 (347)
T 2obl_A          250 L  250 (347)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.53  E-value=6.3e-16  Score=158.83  Aligned_cols=179  Identities=14%  Similarity=0.081  Sum_probs=109.9

Q ss_pred             cceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCee-EEEEccccCCCchHHhcccEEEEccCCC
Q psy7365          66 SYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSG-TAKIYDHDIRTDMTTIRRSLGVCPQYNA  138 (601)
Q Consensus        66 ~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G-~v~~~g~~~~~~~~~~~~~ig~v~Q~~~  138 (601)
                      ..+|+++++.+.+      +||||+  |||||     + ++|+|.+.|++| .|.+.+.+.  ....+++++..++|...
T Consensus        22 ~~~Ld~i~~~l~~G~~~~i~G~~G~--GKTTl-----~-~~ia~~~~~~~G~~v~~~~~e~--~~~~~~~r~~~~~~~~~   91 (296)
T 1cr0_A           22 CTGINDKTLGARGGEVIMVTSGSGM--GKSTF-----V-RQQALQWGTAMGKKVGLAMLEE--SVEETAEDLIGLHNRVR   91 (296)
T ss_dssp             CTTHHHHHCSBCTTCEEEEEESTTS--SHHHH-----H-HHHHHHHHHTSCCCEEEEESSS--CHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHhcCCCCCeEEEEEeCCCC--CHHHH-----H-HHHHHHHHHHcCCeEEEEeCcC--CHHHHHHHHHHHHcCCC
Confidence            4579999988877      999999  56654     4 588999999888 786655443  23334444555555432


Q ss_pred             CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHH-HhhhhchhhhcchhhHHHHHHHhhhh
Q psy7365         139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGM-QRKLDNVKVWFNNKAWIAAVSFMNAA  217 (601)
Q Consensus       139 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~-~qr~~~~~~~~~~~~~~a~~~~~~~~  217 (601)
                      +    ++.+++..+.    ++.++..+.+.++++..++.  ....+.++|.++ +||+. +                   
T Consensus        92 ~----~~~~~l~~~~----~~~~~~~~~~~~~l~~~~l~--i~~~~~~~~~~~l~~~~~-a-------------------  141 (296)
T 1cr0_A           92 L----RQSDSLKREI----IENGKFDQWFDELFGNDTFH--LYDSFAEAETDRLLAKLA-Y-------------------  141 (296)
T ss_dssp             G----GGCHHHHHHH----HHHTHHHHHHHHHHSSSCEE--EECCCCSCCHHHHHHHHH-H-------------------
T ss_pred             h----hhccccccCC----CCHHHHHHHHHHHhccCCEE--EECCCCCCCHHHHHHHHH-H-------------------
Confidence            1    2233443321    22333444455555443332  223346788888 45532 1                   


Q ss_pred             hhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCC---C---CC
Q psy7365         218 NNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTS---G---VD  291 (601)
Q Consensus       218 ~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPts---g---LD  291 (601)
                                         +++.+                                   +|+++|+||||+   +   +|
T Consensus       142 -------------------~~~~~-----------------------------------~p~llilDept~~~~~~~~~d  167 (296)
T 1cr0_A          142 -------------------MRSGL-----------------------------------GCDVIILDHISIVVSASGESD  167 (296)
T ss_dssp             -------------------HHHTT-----------------------------------CCSEEEEEEEC----------
T ss_pred             -------------------HHHhc-----------------------------------CCCEEEEcCccccCCCCCCCC
Confidence                               01112                                   369999999999   5   45


Q ss_pred             H-HHHHHHHHHHHHHhhhccccCCcEEEEEecch--h--------------------HHHhcCCEEEEecCCcc
Q psy7365         292 P-YSRRSIWELLIKVYYASHSLSGRTVILTTHYM--D--------------------EADLLGDRIAIIAAGKL  342 (601)
Q Consensus       292 ~-~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl--~--------------------~~~~l~Drv~vL~~GkI  342 (601)
                      + .....+.+.|+++.    +..|+|||++||+.  +                    .+...||+|++|..|+.
T Consensus       168 ~~~~~~~i~~~L~~la----~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          168 ERKMIDNLMTKLKGFA----KSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             -CHHHHHHHHHHHHHH----HHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred             HHHHHHHHHHHHHHHH----HHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence            5 66677888888773    23489999999995  5                    67889999999998874

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.53  E-value=6.3e-15  Score=141.33  Aligned_cols=82  Identities=7%  Similarity=-0.047  Sum_probs=71.2

Q ss_pred             cccccccCcCChHHHHHHHHHHH-----HhCCCCEEEEEC--CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEc---cChh
Q psy7365         422 HYSDREVRTLSGGNKRKLSTAIA-----LLGNTPLIFLDE--PTSGMDPGARRFLWTCIERAVSEGRCVILTS---HNME  491 (601)
Q Consensus       422 ~~~~~~~~~LSgGqkQRl~lA~A-----L~~~P~lLlLDE--PTsGLD~~~~~~i~~lL~~l~~~G~tVllsT---Hdl~  491 (601)
                      +..++++.+||||||||++||+|     ++.+|+++||||  ||++||+..++.+++.+++   .+.|+|++|   ||++
T Consensus        68 ~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~~~  144 (178)
T 1ye8_A           68 KLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDVHP  144 (178)
T ss_dssp             SEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCCSH
T ss_pred             ccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCCch
Confidence            35678899999999999999996     999999999999  9999999999999988865   467788888   5999


Q ss_pred             HHHhhCCEEEEEeCCEEEE
Q psy7365         492 ECEALCTKLTIMVNGQFTC  510 (601)
Q Consensus       492 e~~~l~drv~iL~~G~iv~  510 (601)
                      +++.+|+|    .+|+++.
T Consensus       145 ~~~~i~~r----~~~~i~~  159 (178)
T 1ye8_A          145 LVKEIRRL----PGAVLIE  159 (178)
T ss_dssp             HHHHHHTC----TTCEEEE
T ss_pred             HHHHHHhc----CCcEEEE
Confidence            99999998    4455544

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.53  E-value=3e-15  Score=166.42  Aligned_cols=143  Identities=9%  Similarity=0.014  Sum_probs=104.7

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCC
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV  158 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~  158 (601)
                      .||||+  |||||     + ++++|+.+|. |.                +.+.++||++.    ..+.++.    ...++
T Consensus       287 ~G~~Gs--GKSTL-----l-~~l~g~~~~~-G~----------------~vi~~~~ee~~----~~l~~~~----~~~g~  333 (525)
T 1tf7_A          287 TGATGT--GKTLL-----V-SRFVENACAN-KE----------------RAILFAYEESR----AQLLRNA----YSWGM  333 (525)
T ss_dssp             EECTTS--SHHHH-----H-HHHHHHHHTT-TC----------------CEEEEESSSCH----HHHHHHH----HTTSC
T ss_pred             EeCCCC--CHHHH-----H-HHHHHHHHhC-CC----------------CEEEEEEeCCH----HHHHHHH----HHcCC
Confidence            899999  56654     4 5888888874 43                12566777652    0222222    23454


Q ss_pred             ChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHH
Q psy7365         159 PKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIV  238 (601)
Q Consensus       159 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  238 (601)
                      +.+       + +..+|+....+..+.+|||||+||+.+|++                                      
T Consensus       334 ~~~-------~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~--------------------------------------  367 (525)
T 1tf7_A          334 DFE-------E-MERQNLLKIVCAYPESAGLEDHLQIIKSEI--------------------------------------  367 (525)
T ss_dssp             CHH-------H-HHHTTSEEECCCCGGGSCHHHHHHHHHHHH--------------------------------------
T ss_pred             CHH-------H-HHhCCCEEEEEeccccCCHHHHHHHHHHHH--------------------------------------
Confidence            422       1 335777778889999999999999864321                                      


Q ss_pred             hhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHH-----HHHHHHHHHHHHhhhccccC
Q psy7365         239 AINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPY-----SRRSIWELLIKVYYASHSLS  313 (601)
Q Consensus       239 ~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~-----~~~~l~~~l~~l~~~~~~~~  313 (601)
                      +..                                   .|+++|+| ||++||+.     .+..++++++.++     ..
T Consensus       368 l~~-----------------------------------~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~-----~~  406 (525)
T 1tf7_A          368 NDF-----------------------------------KPARIAID-SLSALARGVSNNAFRQFVIGVTGYAK-----QE  406 (525)
T ss_dssp             HTT-----------------------------------CCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHH-----HT
T ss_pred             Hhh-----------------------------------CCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHH-----hC
Confidence            112                                   36999999 99999999     9999999998873     46


Q ss_pred             CcEEEEEecch----------hHHHhcCCEEEEecCCc
Q psy7365         314 GRTVILTTHYM----------DEADLLGDRIAIIAAGK  341 (601)
Q Consensus       314 G~TVI~~tHdl----------~~~~~l~Drv~vL~~Gk  341 (601)
                      |+|+|+++|+.          .++..+||++++|..|+
T Consensus       407 g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          407 EITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE  444 (525)
T ss_dssp             TCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred             CCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence            99999999999          78888999999999876

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.51  E-value=3.7e-15  Score=141.44  Aligned_cols=78  Identities=13%  Similarity=0.061  Sum_probs=67.1

Q ss_pred             cCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHH----------------HHHHHHHHHHHHHhCCc
Q psy7365         418 FALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG----------------ARRFLWTCIERAVSEGR  481 (601)
Q Consensus       418 ~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~----------------~~~~i~~lL~~l~~~G~  481 (601)
                      .+.....+ .....|+|||||++||+|++.+|++|+|||||+|||+.                .+..+++.|++++++|.
T Consensus        72 ~g~~~~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~  150 (171)
T 4gp7_A           72 LGKLTVVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGF  150 (171)
T ss_dssp             TTCCEEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTC
T ss_pred             CCCeEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCC
Confidence            45443333 33456999999999999999999999999999999999                66899999998877799


Q ss_pred             EEEEEccChhHHHhh
Q psy7365         482 CVILTSHNMEECEAL  496 (601)
Q Consensus       482 tVllsTHdl~e~~~l  496 (601)
                      |+|++|||+++++.+
T Consensus       151 tvi~vtH~~~~~~~~  165 (171)
T 4gp7_A          151 RYVYILNSPEEVEEV  165 (171)
T ss_dssp             SEEEEECSHHHHHHE
T ss_pred             cEEEEeCCHHHhhhh
Confidence            999999999999863

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.50  E-value=1.5e-15  Score=152.07  Aligned_cols=109  Identities=15%  Similarity=0.151  Sum_probs=66.1

Q ss_pred             CccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCC
Q psy7365          64 IDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYN  137 (601)
Q Consensus        64 ~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~  137 (601)
                      ++..+|+|+||++.+      +|||||  ||||     ++ ++|+|++    |.+.++         ..++.+++++|++
T Consensus        10 ~~~~~l~~isl~i~~g~iigI~G~~Gs--GKST-----l~-k~L~~~l----G~~~~~---------~~~~~i~~v~~d~   68 (245)
T 2jeo_A           10 GVDLGTENLYFQSMRPFLIGVSGGTAS--GKST-----VC-EKIMELL----GQNEVE---------QRQRKVVILSQDR   68 (245)
T ss_dssp             -------------CCSEEEEEECSTTS--SHHH-----HH-HHHHHHH----TGGGSC---------GGGCSEEEEEGGG
T ss_pred             CCceeecceeccCCCCEEEEEECCCCC--CHHH-----HH-HHHHHHh----chhccc---------ccCCceEEEeCCc
Confidence            356689999999977      999999  4554     44 6888876    444333         2467899999995


Q ss_pred             CCCCCCCHHHHHHHhHhhcCCChH--HHHHHHHHHHHHcCCCcccCCccccCChHHHhhhh
Q psy7365         138 ALFDKLTVEEHMWFYSQLKQVPKD--LAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD  196 (601)
Q Consensus       138 ~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~  196 (601)
                       +|+.+|+.+++.+....++.+..  ....++.+.++.+  .+..++++.+||+||+||++
T Consensus        69 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~  126 (245)
T 2jeo_A           69 -FYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLP  126 (245)
T ss_dssp             -GBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECS
T ss_pred             -CccccCHhHhhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccC
Confidence             77889999999876554443211  1123344555543  45567889999999999985

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.50  E-value=6.6e-14  Score=148.98  Aligned_cols=78  Identities=28%  Similarity=0.362  Sum_probs=69.7

Q ss_pred             cccCcCChHHHHHH------HHHHHHhCC-CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCC
Q psy7365         426 REVRTLSGGNKRKL------STAIALLGN-TPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT  498 (601)
Q Consensus       426 ~~~~~LSgGqkQRl------~lA~AL~~~-P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~d  498 (601)
                      +++..||||||||+      ++|++++.+ |+++||||||+|||+..+..+++.|+++. ++.+||++||+++ +..+||
T Consensus       276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~-~~~~~d  353 (371)
T 3auy_A          276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE-LEDVAD  353 (371)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG-GGGGCS
T ss_pred             cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH-HHhhCC
Confidence            56789999999988      567889999 99999999999999999999999999864 4568999999986 688999


Q ss_pred             EEEEEeC
Q psy7365         499 KLTIMVN  505 (601)
Q Consensus       499 rv~iL~~  505 (601)
                      ++++|++
T Consensus       354 ~~~~l~k  360 (371)
T 3auy_A          354 VIINVKK  360 (371)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9999973

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.50  E-value=6.5e-16  Score=183.33  Aligned_cols=177  Identities=16%  Similarity=0.174  Sum_probs=112.1

Q ss_pred             eeeeecCCCCCC-ccchhhhhcc-----cccccccCCCccceeecceEEee---------c----ccCCCCCCCccccch
Q psy7365          33 EVTYVLPQDPAS-MGAYVSLFES-----LSENRDKLGIDSYGISDTSLEEQ---------P----LGPSGITLGLHTLGL   93 (601)
Q Consensus        33 ~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---------~----~g~~g~~~g~~~~g~   93 (601)
                      +..|+.|..... .......+++     |++.|.   ++.++++|++|++.         .    +||||+  |||||  
T Consensus       733 ~~~~~~P~~~~~~~~~~~l~i~~~rHP~l~~~~~---~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgs--GKSTl--  805 (1022)
T 2o8b_B          733 DGPMCRPVILLPEDTPPFLELKGSRHPCITKTFF---GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMG--GKSTL--  805 (1022)
T ss_dssp             SSCEECCEECCTTTSCCCEEEEEECCCC---------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTS--SHHHH--
T ss_pred             cCCccCCccccCCCCCceEEEEeccccEEEEEec---CCceEeeeeeeccccccccCCCCcEEEEECCCCC--ChHHH--
Confidence            455777765421 1223455888     888872   23569999999873         2    999999  56654  


Q ss_pred             hhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEE-EEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHH
Q psy7365          94 EFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLG-VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIG  172 (601)
Q Consensus        94 ~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig-~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~  172 (601)
                          +|++ |++++                   ..++| ||||++.   .++|.+++.                     .
T Consensus       806 ----Lr~i-Gl~~~-------------------~aqiG~~Vpq~~~---~l~v~d~I~---------------------~  837 (1022)
T 2o8b_B          806 ----MRQA-GLLAV-------------------MAQMGCYVPAEVC---RLTPIDRVF---------------------T  837 (1022)
T ss_dssp             ----HHHH-HHHHH-------------------HHTTTCCEESSEE---EECCCSBEE---------------------E
T ss_pred             ----HHHH-HHHHH-------------------HhheeEEeccCcC---CCCHHHHHH---------------------H
Confidence                5688 99874                   12456 9999863   445555441                     1


Q ss_pred             HcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHH
Q psy7365         173 DLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMA  252 (601)
Q Consensus       173 ~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  252 (601)
                      ++|+.+...+..+++|++|++ ++++                        ++              ++            
T Consensus       838 rig~~d~~~~~~stf~~em~~-~a~a------------------------l~--------------la------------  866 (1022)
T 2o8b_B          838 RLGASDRIMSGESTFFVELSE-TASI------------------------LM--------------HA------------  866 (1022)
T ss_dssp             ECC---------CHHHHHHHH-HHHH------------------------HH--------------HC------------
T ss_pred             HcCCHHHHhhchhhhHHHHHH-HHHH------------------------HH--------------hC------------
Confidence            234444444456788998887 4321                        11              11            


Q ss_pred             HHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHH-HHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcC
Q psy7365         253 LETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSR-RSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLG  331 (601)
Q Consensus       253 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~-~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~  331 (601)
                                             .+|+++|||||++|+|+... ..++++|+++.    +..|.++|++||+++++..++
T Consensus       867 -----------------------~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~----~~~g~~vl~~TH~~el~~~~~  919 (1022)
T 2o8b_B          867 -----------------------TAHSLVLVDELGRGTATFDGTAIANAVVKELA----ETIKCRTLFSTHYHSLVEDYS  919 (1022)
T ss_dssp             -----------------------CTTCEEEEECTTTTSCHHHHHHHHHHHHHHHH----HTSCCEEEEECCCHHHHHHTS
T ss_pred             -----------------------CCCcEEEEECCCCCCChHHHHHHHHHHHHHHH----hcCCCEEEEEeCCHHHHHHhC
Confidence                                   23689999999999999874 55789998873    223899999999999999999


Q ss_pred             CEEEEecCCccc
Q psy7365         332 DRIAIIAAGKLQ  343 (601)
Q Consensus       332 Drv~vL~~GkIv  343 (601)
                      |++.++ +|++.
T Consensus       920 d~~~v~-~g~~~  930 (1022)
T 2o8b_B          920 QNVAVR-LGHMA  930 (1022)
T ss_dssp             SCSSEE-EEEEE
T ss_pred             Ccceee-cCeEE
Confidence            998876 46654

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.47  E-value=1.3e-13  Score=131.83  Aligned_cols=55  Identities=18%  Similarity=0.162  Sum_probs=46.7

Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEec
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA  338 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~  338 (601)
                      ||+++||||||+|||+..+..++++|+++.      .+.++|++||+... ...||+++.+.
T Consensus        86 ~~~~llLDEp~a~LD~~~~~~~~~~l~~~~------~~~~~ivith~~~~-~~~ad~i~~v~  140 (173)
T 3kta_B           86 PAPFYLFDEIDAHLDDANVKRVADLIKESS------KESQFIVITLRDVM-MANADKIIGVS  140 (173)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHHHHHT------TTSEEEEECSCHHH-HTTCSEEEEEE
T ss_pred             CCCEEEECCCccCCCHHHHHHHHHHHHHhc------cCCEEEEEEecHHH-HHhCCEEEEEE
Confidence            468999999999999999999999998872      34689999999754 57899998664

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.46  E-value=1.4e-13  Score=149.11  Aligned_cols=82  Identities=20%  Similarity=0.179  Sum_probs=73.1

Q ss_pred             ccccccCcCChHHHHHHHHHHHHh----CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCC
Q psy7365         423 YSDREVRTLSGGNKRKLSTAIALL----GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT  498 (601)
Q Consensus       423 ~~~~~~~~LSgGqkQRl~lA~AL~----~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~d  498 (601)
                      ...+++..||||||||++||++|+    .+|+++||||||++||+..+..++++|+++.++|.++|++||+.+. ...||
T Consensus       326 ~~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~-~~~~d  404 (430)
T 1w1w_A          326 KRFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTM-FEKSD  404 (430)
T ss_dssp             CCCCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHH-HTTCS
T ss_pred             ccccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHH-HHhCC
Confidence            345678899999999999999999    6899999999999999999999999999986668899999999654 56799


Q ss_pred             EEEEEeC
Q psy7365         499 KLTIMVN  505 (601)
Q Consensus       499 rv~iL~~  505 (601)
                      +++.|..
T Consensus       405 ~~~~~~~  411 (430)
T 1w1w_A          405 ALVGVYR  411 (430)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999863

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.46  E-value=6.6e-14  Score=147.21  Aligned_cols=56  Identities=30%  Similarity=0.343  Sum_probs=49.3

Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEec
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA  338 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~  338 (601)
                      +|++|||||||+||||..+..+++.|.++.     ..|.|||++||+. ++...||++++|.
T Consensus       272 ~p~~lllDEp~~~LD~~~~~~l~~~l~~~~-----~~~~~vi~~sH~~-~~~~~~d~~~~l~  327 (339)
T 3qkt_A          272 EISLLILDEPTPYLDEERRRKLITIMERYL-----KKIPQVILVSHDE-ELKDAADHVIRIS  327 (339)
T ss_dssp             TTCEEEEECCCTTCCHHHHHHHHHHHHHTG-----GGSSEEEEEESCG-GGGGGCSEEEEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHH-----hcCCEEEEEEChH-HHHHhCCEEEEEE
Confidence            368999999999999999999999999872     3478999999995 4678999999985

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.45  E-value=6.2e-15  Score=166.76  Aligned_cols=158  Identities=15%  Similarity=0.096  Sum_probs=101.2

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCC-CeeEEEEccccCCC----chHHhcccEEEEccCCCCCCCCCHHHHHHHhH
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPV-SSGTAKIYDHDIRT----DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYS  153 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~-~~G~v~~~g~~~~~----~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~  153 (601)
                      +|||||  ||||     + .++|+|+..| ++|.|+++|.++..    .....++.+||+||++.+++.+||.||+.+..
T Consensus        51 vG~nGs--GKST-----L-L~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~  122 (608)
T 3szr_A           51 IGDQSS--GKSS-----V-LEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ  122 (608)
T ss_dssp             CCCTTS--CHHH-----H-HHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH
T ss_pred             ECCCCC--hHHH-----H-HHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHH
Confidence            999999  4555     4 5799999988 89999999998621    12345778999999999999999999998754


Q ss_pred             hhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcc
Q psy7365         154 QLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRD  233 (601)
Q Consensus       154 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~  233 (601)
                      ...+..               +         ..+|   ++++.++.                                  
T Consensus       123 ~~~~~~---------------~---------~~~s---~~~i~l~i----------------------------------  141 (608)
T 3szr_A          123 NAIAGE---------------G---------MGIS---HELITLEI----------------------------------  141 (608)
T ss_dssp             HHHHCS---------------S---------SCCC---SCCEEEEE----------------------------------
T ss_pred             HHhcCC---------------c---------cccc---hHHHHHHh----------------------------------
Confidence            332110               0         0111   12222110                                  


Q ss_pred             hhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecC------CCCCCHHHHHHHHHHHHHHhh
Q psy7365         234 DYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEP------TSGVDPYSRRSIWELLIKVYY  307 (601)
Q Consensus       234 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEP------tsgLD~~~~~~l~~~l~~l~~  307 (601)
                          ...                                   ..|+++++|||      |+|||+..+..+++++.++..
T Consensus       142 ----~~~-----------------------------------~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~  182 (608)
T 3szr_A          142 ----SSR-----------------------------------DVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQ  182 (608)
T ss_dssp             ----EES-----------------------------------SSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTT
T ss_pred             ----cCC-----------------------------------CCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHh
Confidence                001                                   12689999999      999999999999999998521


Q ss_pred             hccccCCcEEEEEecchhHH--------Hhc----CCEEEEecCCccccccC
Q psy7365         308 ASHSLSGRTVILTTHYMDEA--------DLL----GDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       308 ~~~~~~G~TVI~~tHdl~~~--------~~l----~Drv~vL~~GkIv~~G~  347 (601)
                         +..+.++++++|+++.+        ..+    +..|+++.++..+..++
T Consensus       183 ---~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~  231 (608)
T 3szr_A          183 ---RQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGT  231 (608)
T ss_dssp             ---SSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSS
T ss_pred             ---cCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCccc
Confidence               34578999999998733        221    34577888877766554

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.44  E-value=3.3e-17  Score=160.01  Aligned_cols=124  Identities=10%  Similarity=-0.039  Sum_probs=99.9

Q ss_pred             ccccccCCCCcccCCCCCHHHHHHH----hH--HhcCCChhHHHHHHHHH------HHHcCCCcccccccCcCChHHHHH
Q psy7365         371 KSYIGYCPQFDALNDRLTPREHLEF----YS--RVRNLPSVLLNTIVNES------LNKFALGHYSDREVRTLSGGNKRK  438 (601)
Q Consensus       371 ~~~ig~v~Q~~~l~~~lTv~E~L~~----~~--~~~g~~~~~~~~~~~~l------Le~~~L~~~~~~~~~~LSgGqkQR  438 (601)
                      ++.++|+||++.+|+.+|+.+++..    +.  .+++.+..+.++++++.      ++.+++.+..++.+..||      
T Consensus        63 ~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS------  136 (207)
T 1znw_A           63 VDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT------  136 (207)
T ss_dssp             CBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE------
T ss_pred             cCCCeeEecCHHHHHHHHhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE------
Confidence            4679999999888888888777642    22  33455555555666665      677777777788888998      


Q ss_pred             HHHHHHHhCCCCEEEEECCCCCC----CHHHHHHHHHHHHHHHh-CCcEEEEEccChhHHHhhCCEEEEEeC
Q psy7365         439 LSTAIALLGNTPLIFLDEPTSGM----DPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVN  505 (601)
Q Consensus       439 l~lA~AL~~~P~lLlLDEPTsGL----D~~~~~~i~~lL~~l~~-~G~tVllsTHdl~e~~~l~drv~iL~~  505 (601)
                           +|+.+|++++|||||+|+    |+..+++++++++++.+ .|.|+|++|||++++..+||||++|..
T Consensus       137 -----~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~~  203 (207)
T 1znw_A          137 -----VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGTA  203 (207)
T ss_dssp             -----EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC---
T ss_pred             -----EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhcc
Confidence                 899999999999999998    78899999999999975 489999999999999999999999853

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.43  E-value=7.5e-16  Score=166.19  Aligned_cols=120  Identities=14%  Similarity=0.022  Sum_probs=97.7

Q ss_pred             ccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChH--HHHHHHHHHHHhC-----
Q psy7365         375 GYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGG--NKRKLSTAIALLG-----  447 (601)
Q Consensus       375 g~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgG--qkQRl~lA~AL~~-----  447 (601)
                      +|++|++ .++.+|++|++.+..     .    +..++++++.+++.+.. ..+. ||+|  ||||+.||++|++     
T Consensus       111 ~~v~q~~-~~~~ltv~D~~g~~~-----~----~~~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~la~aL~~~~~p~  178 (413)
T 1tq4_A          111 RHPYKHP-NIPNVVFWDLPGIGS-----T----NFPPDTYLEKMKFYEYD-FFII-ISATRFKKNDIDIAKAISMMKKEF  178 (413)
T ss_dssp             CEEEECS-SCTTEEEEECCCGGG-----S----SCCHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHHHHHHHHHTTCEE
T ss_pred             EEecccc-ccCCeeehHhhcccc-----h----HHHHHHHHHHcCCCccC-CeEE-eCCCCccHHHHHHHHHHHhcCCCe
Confidence            8899985 577889998875431     1    12467889999987653 3344 9999  9999999999999     


Q ss_pred             -----CCCEEEEECCCCCCCHHHHHHHHHHHHHHH-----hCC----cEEEEEccChhH--HHhhCCEEE-EEeCC
Q psy7365         448 -----NTPLIFLDEPTSGMDPGARRFLWTCIERAV-----SEG----RCVILTSHNMEE--CEALCTKLT-IMVNG  506 (601)
Q Consensus       448 -----~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~-----~~G----~tVllsTHdl~e--~~~l~drv~-iL~~G  506 (601)
                           +|++++|||||+|||+.+++++++.|+++.     +.|    .+|+++||++++  ++.+||++. .|..|
T Consensus       179 ~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg  254 (413)
T 1tq4_A          179 YFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  254 (413)
T ss_dssp             EEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             EEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence                 999999999999999999999999999984     333    678999999998  999999985 45444

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.39  E-value=1.7e-15  Score=147.30  Aligned_cols=138  Identities=13%  Similarity=0.036  Sum_probs=101.5

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCC--CCCCHHHHHHHhHhhc
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALF--DKLTVEEHMWFYSQLK  156 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~--~~~tv~e~l~~~~~~~  156 (601)
                      +|||||  ||||     ++ ++|+|+++|                     .+++++|++.++  ..+++.++..+..   
T Consensus        12 ~G~~Gs--GKST-----l~-~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~---   59 (211)
T 3asz_A           12 AGGTAS--GKTT-----LA-QALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY---   59 (211)
T ss_dssp             EESTTS--SHHH-----HH-HHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT---
T ss_pred             ECCCCC--CHHH-----HH-HHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC---
Confidence            899999  4555     44 699998865                     489999998766  5689998876532   


Q ss_pred             CCChHHHHHHHHHHHHHcCCCcccCCccccCChHHH----hhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCc
Q psy7365         157 QVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQ----RKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSR  232 (601)
Q Consensus       157 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~----qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~  232 (601)
                      +.+......++.++++.+++.+..++++.++|+||+    ||++++++|+.+                            
T Consensus        60 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~----------------------------  111 (211)
T 3asz_A           60 DHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILE----------------------------  111 (211)
T ss_dssp             TSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEE----------------------------
T ss_pred             CChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEe----------------------------
Confidence            222222234567788999988888889999999975    566554433322                            


Q ss_pred             chhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCC-------CCHHHHHHHHHHHHHH
Q psy7365         233 DDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSG-------VDPYSRRSIWELLIKV  305 (601)
Q Consensus       233 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsg-------LD~~~~~~l~~~l~~l  305 (601)
                                                                   |.++++||||++       ||+.....+++.+.+.
T Consensus       112 ---------------------------------------------~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~  146 (211)
T 3asz_A          112 ---------------------------------------------GILVLYPKELRDLMDLKVFVDADADERFIRRLKRD  146 (211)
T ss_dssp             ---------------------------------------------STTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHH
T ss_pred             ---------------------------------------------ehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHH
Confidence                                                         367888999999       8999888888888765


Q ss_pred             hhhccccCCcEEEEEecchh
Q psy7365         306 YYASHSLSGRTVILTTHYMD  325 (601)
Q Consensus       306 ~~~~~~~~G~TVI~~tHdl~  325 (601)
                      .    +..|.|++.++|++.
T Consensus       147 ~----~~~g~t~~~~~~~~~  162 (211)
T 3asz_A          147 V----LERGRSLEGVVAQYL  162 (211)
T ss_dssp             H----HHSCCCHHHHHHHHH
T ss_pred             H----HHhCCCHHHHHHHHH
Confidence            2    235889988899853

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.39  E-value=2e-14  Score=168.92  Aligned_cols=65  Identities=18%  Similarity=0.350  Sum_probs=53.7

Q ss_pred             CCcEEEEecCCCCCCHHHHHHH-HHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccccc
Q psy7365         277 PASTVILDEPTSGVDPYSRRSI-WELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  346 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l-~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G  346 (601)
                      +|+++||||||+|+||.....+ +.++..+.    +..|.|+|++||+.+. ..+||++..+.+|++...+
T Consensus       741 ~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~----~~~g~~vl~aTH~~el-~~lad~~~~v~ng~v~~~~  806 (934)
T 3thx_A          741 KDSLIIIDELGRGTSTYDGFGLAWAISEYIA----TKIGAFCMFATHFHEL-TALANQIPTVNNLHVTALT  806 (934)
T ss_dssp             TTCEEEEESCSCSSCHHHHHHHHHHHHHHHH----HTTCCEEEEEESCGGG-GGGGGTCTTEEEEEEEEEE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH----hcCCCEEEEEcCcHHH-HHHhcccceeEeeEEEEEe
Confidence            4799999999999999988877 77777773    2248999999999654 4699999999999887654

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.37  E-value=6.9e-14  Score=151.20  Aligned_cols=125  Identities=14%  Similarity=0.022  Sum_probs=67.9

Q ss_pred             hhhcccccccccCCCccceeecceEEeecccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhccc
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRS  129 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~  129 (601)
                      +.+++|++.|+.    ..+++|+||++.-+||||+  |||||      .++|+|...|+.|.   +|.++..........
T Consensus        12 l~~~~l~~~y~~----~~vl~~vsf~I~lvG~sGa--GKSTL------ln~L~g~~~~~~~~---~~~~~~~~~t~~~~~   76 (418)
T 2qag_C           12 VGFANLPNQVYR----KSVKRGFEFTLMVVGESGL--GKSTL------INSLFLTDLYSPEY---PGPSHRIKKTVQVEQ   76 (418)
T ss_dssp             ---CCCCCCTTT----TTCC-CCCEEEEEECCTTS--SHHHH------HHHHTTCCCCCCCC---CSCC-----CCEEEE
T ss_pred             EEEEecceeECC----EEEecCCCEEEEEECCCCC--cHHHH------HHHHhCCCCCCCCC---CCcccCCccceeeee
Confidence            448999999864    4599999999999999999  56654      56899998866551   333222111112356


Q ss_pred             EEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcch
Q psy7365         130 LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNN  204 (601)
Q Consensus       130 ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~  204 (601)
                      +++++|.+.+++.+|++|++.|+....+   ......+.+.++            ..++.+++||++++|+++.+
T Consensus        77 i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~------------~~~~~~l~qr~~IaRal~~d  136 (418)
T 2qag_C           77 SKVLIKEGGVQLLLTIVDTPGFGDAVDN---SNCWQPVIDYID------------SKFEDYLNAESRVNRRQMPD  136 (418)
T ss_dssp             EECC------CEEEEEEECC--------------CHHHHHHHH------------HHHHHHTTTSCC-CCCCCCC
T ss_pred             EEEEEecCCcccceeeeechhhhhhccc---hhhHHHHHHHHH------------HHHHHHHHHHHHHHHHhccC
Confidence            8999999988889999999877643211   111112222222            24566788998876654433

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.37  E-value=6.6e-15  Score=152.90  Aligned_cols=101  Identities=16%  Similarity=0.084  Sum_probs=70.2

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch--H---H--hcccEEEEccCCCCCCCCCHHHHHHH
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM--T---T--IRRSLGVCPQYNALFDKLTVEEHMWF  151 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~--~---~--~~~~ig~v~Q~~~~~~~~tv~e~l~~  151 (601)
                      +|||||  ||||     ++ ++|+|+++|++|+|.+.|.++....  .   .  .+..++++||++.++|..++.+|+.+
T Consensus       108 vG~nGs--GKTT-----ll-~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~  179 (304)
T 1rj9_A          108 VGVNGV--GKTT-----TI-AKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA  179 (304)
T ss_dssp             ECSTTS--SHHH-----HH-HHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred             ECCCCC--cHHH-----HH-HHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence            899999  4554     44 6899999999999999999975321  1   1  24579999999999999999999986


Q ss_pred             hHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365         152 YSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK  199 (601)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~  199 (601)
                      ... .+.+        ..+++..|+.+...+.+.+||   +||+++||
T Consensus       180 ~~~-~~~d--------~~llDt~G~~~~~~~~~~eLs---~~r~~iaR  215 (304)
T 1rj9_A          180 MKA-RGYD--------LLFVDTAGRLHTKHNLMEELK---KVKRAIAK  215 (304)
T ss_dssp             HHH-HTCS--------EEEECCCCCCTTCHHHHHHHH---HHHHHHHH
T ss_pred             HHh-CCCC--------EEEecCCCCCCchHHHHHHHH---HHHHHHHH
Confidence            532 1211        013455565554445555555   78876443

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.37  E-value=4.7e-13  Score=148.52  Aligned_cols=56  Identities=20%  Similarity=0.226  Sum_probs=50.4

Q ss_pred             cEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCc
Q psy7365         279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGK  341 (601)
Q Consensus       279 ~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~Gk  341 (601)
                      ++|||||||+|||+.++..+.++|+++.     . |.|||++||+++.+. .||++++|.++.
T Consensus       419 ~~lilDEp~~gld~~~~~~i~~~l~~~~-----~-~~~vi~itH~~~~~~-~~d~~~~~~~~~  474 (517)
T 4ad8_A          419 PSVVFDEVDAGIGGAAAIAVAEQLSRLA-----D-TRQVLVVTHLAQIAA-RAHHHYKVEKQV  474 (517)
T ss_dssp             SEEEECSCSSSCCTHHHHHHHHHHHHHH-----H-HSEEEEECCCHHHHH-HSSEEEEEECCE
T ss_pred             CEEEEeCCcCCCCHHHHHHHHHHHHHHh-----C-CCEEEEEecCHHHHH-hCCEEEEEeccc
Confidence            8999999999999999999999999983     3 789999999998776 699999997653

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.35  E-value=1.6e-14  Score=141.29  Aligned_cols=61  Identities=18%  Similarity=0.137  Sum_probs=43.0

Q ss_pred             CCcEEEEecCCCCCCHH-------H-----HHHHHHHHHHHhhhccccCCcEEEEEecchhH----HHhcCCEEEEecCC
Q psy7365         277 PASTVILDEPTSGVDPY-------S-----RRSIWELLIKVYYASHSLSGRTVILTTHYMDE----ADLLGDRIAIIAAG  340 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~-------~-----~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~----~~~l~Drv~vL~~G  340 (601)
                      .|+++++||||+++|+.       .     ...+++.|.++.    +..|+|||++||.+.+    +...||+++++.+|
T Consensus       125 ~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~----~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~  200 (231)
T 4a74_A          125 PVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLA----NLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG  200 (231)
T ss_dssp             CEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHH----HHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred             ceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHH----HHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence            47999999999999983       2     225566666553    2358999999995554    89999999999876


Q ss_pred             c
Q psy7365         341 K  341 (601)
Q Consensus       341 k  341 (601)
                      +
T Consensus       201 ~  201 (231)
T 4a74_A          201 K  201 (231)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.31  E-value=1.4e-13  Score=158.99  Aligned_cols=131  Identities=18%  Similarity=0.194  Sum_probs=89.4

Q ss_pred             ccceeecceEEeec----ccCCCCCCCccccchhhhHHHhccCCCC-CCeeEEEEccccCCCchHHhcccEEEEccCCCC
Q psy7365          65 DSYGISDTSLEEQP----LGPSGITLGLHTLGLEFVSRSMLMGMLP-VSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNAL  139 (601)
Q Consensus        65 ~~~~~~~~~~~~~~----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~-~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~  139 (601)
                      +.++++|+||+ ..    +||||+  |||||      .|+|+|+.. +..|.+.      .    ..+..+|+++|   +
T Consensus       565 ~~~vl~disl~-g~i~~I~GpNGs--GKSTl------Lr~iagl~~~~~~G~~v------p----a~~~~i~~v~~---i  622 (765)
T 1ewq_A          565 TEFVPNDLEMA-HELVLITGPNMA--GKSTF------LRQTALIALLAQVGSFV------P----AEEAHLPLFDG---I  622 (765)
T ss_dssp             SCCCCEEEEES-SCEEEEESCSSS--SHHHH------HHHHHHHHHHHTTTCCB------S----SSEEEECCCSE---E
T ss_pred             CceEeeeccCC-CcEEEEECCCCC--ChHHH------HHHHHhhhhhcccCcee------e----hhccceeeHHH---h
Confidence            46799999997 44    999999  56654      579999874 6777642      1    11346888877   6


Q ss_pred             CCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhh
Q psy7365         140 FDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANN  219 (601)
Q Consensus       140 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~  219 (601)
                      |+.+++.||+.+                                  .+|+||+|++.+++++                  
T Consensus       623 ~~~~~~~d~l~~----------------------------------g~S~~~~e~~~la~il------------------  650 (765)
T 1ewq_A          623 YTRIGASDDLAG----------------------------------GKSTFMVEMEEVALIL------------------  650 (765)
T ss_dssp             EEECCC----------------------------------------CCSHHHHHHHHHHHHH------------------
T ss_pred             hccCCHHHHHHh----------------------------------cccHHHHHHHHHHHHH------------------
Confidence            777888887643                                  2588999997642210                  


Q ss_pred             hhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecC---CCCCCHHHH-
Q psy7365         220 VILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEP---TSGVDPYSR-  295 (601)
Q Consensus       220 ~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEP---tsgLD~~~~-  295 (601)
                                        ..                                   +.+|+++|||||   |++||+.+. 
T Consensus       651 ------------------~~-----------------------------------a~~p~LlLLDEpgrGTs~lD~~~~~  677 (765)
T 1ewq_A          651 ------------------KE-----------------------------------ATENSLVLLDEVGRGTSSLDGVAIA  677 (765)
T ss_dssp             ------------------HH-----------------------------------CCTTEEEEEESTTTTSCHHHHHHHH
T ss_pred             ------------------Hh-----------------------------------ccCCCEEEEECCCCCCCCcCHHHHH
Confidence                              00                                   234699999999   999999876 


Q ss_pred             HHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcC
Q psy7365         296 RSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLG  331 (601)
Q Consensus       296 ~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~  331 (601)
                      ..+.+.|.+        .|.|+|++||+.++.. ++
T Consensus       678 ~~i~~~L~~--------~g~~vl~~TH~~~l~~-~~  704 (765)
T 1ewq_A          678 TAVAEALHE--------RRAYTLFATHYFELTA-LG  704 (765)
T ss_dssp             HHHHHHHHH--------HTCEEEEECCCHHHHT-CC
T ss_pred             HHHHHHHHh--------CCCEEEEEeCCHHHHH-hh
Confidence            456666654        3789999999987754 44

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.30  E-value=1.4e-13  Score=139.88  Aligned_cols=133  Identities=16%  Similarity=0.123  Sum_probs=82.0

Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccccccccc
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFAR  357 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~~~g~  357 (601)
                      |+++++||||   |+.+...+   ++..      ..|.+|++++|+.+ +...|||++.|......              
T Consensus        99 p~illlDEp~---D~~~~~~~---l~~~------~~g~~vl~t~H~~~-~~~~~dri~~l~~~~~~--------------  151 (261)
T 2eyu_A           99 PDVIFVGEMR---DLETVETA---LRAA------ETGHLVFGTLHTNT-AIDTIHRIVDIFPLNQQ--------------  151 (261)
T ss_dssp             CSEEEESCCC---SHHHHHHH---HHHH------HTTCEEEEEECCSS-HHHHHHHHHHTSCGGGH--------------
T ss_pred             CCEEEeCCCC---CHHHHHHH---HHHH------ccCCEEEEEeCcch-HHHHHHHHhhhcCcccc--------------
Confidence            6999999999   99886543   3322      25899999999987 56788887766431100              


Q ss_pred             ccccccccCCcccccccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHH
Q psy7365         358 GYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKR  437 (601)
Q Consensus       358 g~~igld~~~~~~~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQ  437 (601)
                                                       +.+.+              ...   +  ++.....++...+|+|  |
T Consensus       152 ---------------------------------~~~~~--------------~l~---~--~l~~vi~qrl~~~~~G--~  177 (261)
T 2eyu_A          152 ---------------------------------EQVRI--------------VLS---F--ILQGIISQRLLPKIGG--G  177 (261)
T ss_dssp             ---------------------------------HHHHH--------------HHH---H--HEEEEEEEEEECCSSS--S
T ss_pred             ---------------------------------chHHH--------------HHH---H--HhhEEEEEEeEecCCC--C
Confidence                                             00000              000   0  0000111111224577  8


Q ss_pred             HHHHHHHHhCCCCE--EEEECCCCCCCHHHH--------HHHHHHHHHHHhCCcEEEEEccChhHHHhhC
Q psy7365         438 KLSTAIALLGNTPL--IFLDEPTSGMDPGAR--------RFLWTCIERAVSEGRCVILTSHNMEECEALC  497 (601)
Q Consensus       438 Rl~lA~AL~~~P~l--LlLDEPTsGLD~~~~--------~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~  497 (601)
                      |++++.++..+|++  +|+||.|+.+|...+        +.+.+...++..+|.|.      ++++.+++
T Consensus       178 R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~------~~~a~r~~  241 (261)
T 2eyu_A          178 RVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLIT------LEDAMEAS  241 (261)
T ss_dssp             SEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSC------HHHHHHHC
T ss_pred             EEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCC------HHHHHHHh
Confidence            99999999999999  999999999997642        22334333445668764      45555554

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.27  E-value=7.6e-13  Score=155.12  Aligned_cols=52  Identities=25%  Similarity=0.182  Sum_probs=41.4

Q ss_pred             CCcEEEEecCCCCCCHHHHHHHH-HHHHHHhhhccccCCcEEEEEecchhHHHhcCCE
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIW-ELLIKVYYASHSLSGRTVILTTHYMDEADLLGDR  333 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~-~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Dr  333 (601)
                      +|+++||||||+||||.....+. .++..+.    +..|.|+|++||+++.+ .++|+
T Consensus       752 ~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~----~~~g~tvl~vTH~~el~-~l~~~  804 (918)
T 3thx_B          752 SQSLVILDELGRGTSTHDGIAIAYATLEYFI----RDVKSLTLFVTHYPPVC-ELEKN  804 (918)
T ss_dssp             TTCEEEEESTTTTSCHHHHHHHHHHHHHHHH----HTTCCEEEEECSCGGGG-GHHHH
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH----HhcCCeEEEEeCcHHHH-HHHhh
Confidence            47999999999999999888775 7777763    23589999999998765 45554

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.27  E-value=1.3e-14  Score=140.69  Aligned_cols=48  Identities=25%  Similarity=0.281  Sum_probs=38.1

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCC
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYN  137 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~  137 (601)
                      +|||||  |||||      .++|+|+++ ++| |.++|.++. .....++.+||++|+.
T Consensus         7 ~G~nG~--GKTTl------l~~l~g~~~-~~G-i~~~g~~~~-~~~~~~~~ig~~~~~~   54 (189)
T 2i3b_A            7 TGPPGV--GKTTL------IHKASEVLK-SSG-VPVDGFYTE-EVRQGGRRIGFDVVTL   54 (189)
T ss_dssp             ESCCSS--CHHHH------HHHHHHHHH-HTT-CCCEEEECC-EEETTSSEEEEEEEET
T ss_pred             ECCCCC--hHHHH------HHHHHhhcc-cCC-EEEcCEecc-hhHhhhceEEEEEEec
Confidence            899999  56654      569999999 999 999998773 2234577899999985

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.25  E-value=3.5e-12  Score=135.32  Aligned_cols=61  Identities=18%  Similarity=0.266  Sum_probs=52.7

Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                      .|++|||||||++||+..+..+++.+.++        +.|+|++|| ++.   .||++++|.+|++...+++.
T Consensus       292 ~p~iLLLDEp~s~LD~~~~~~l~~~l~~~--------~qt~i~~th-~~~---~~~~i~~l~~G~i~~~g~~~  352 (359)
T 2o5v_A          292 EDPVLLLDDFTAELDPHRRQYLLDLAASV--------PQAIVTGTE-LAP---GAALTLRAQAGRFTPVADEE  352 (359)
T ss_dssp             SCCEEEECCGGGCCCHHHHHHHHHHHHHS--------SEEEEEESS-CCT---TCSEEEEEETTEEEECCCTT
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHhc--------CcEEEEEEe-ccc---cCCEEEEEECCEEEecCCHH
Confidence            36899999999999999999999999875        269999999 444   89999999999998777543

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.24  E-value=4.2e-11  Score=127.28  Aligned_cols=55  Identities=31%  Similarity=0.376  Sum_probs=48.3

Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecC
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA  339 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~  339 (601)
                      |+++||||||+|||+..+..+.+.|.++     . .+.+||++||+.+ +...||++++|.+
T Consensus       306 ~~~lllDEp~~~LD~~~~~~l~~~l~~~-----~-~~~~vi~~th~~~-~~~~~d~~~~l~k  360 (371)
T 3auy_A          306 VECIILDEPTVYLDENRRAKLAEIFRKV-----K-SIPQMIIITHHRE-LEDVADVIINVKK  360 (371)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHHHHC-----C-SCSEEEEEESCGG-GGGGCSEEEEEEE
T ss_pred             CCeEEEeCCCCcCCHHHHHHHHHHHHHh-----c-cCCeEEEEEChHH-HHhhCCEEEEEEe
Confidence            6899999999999999999999999875     1 3468999999986 6789999999973

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.23  E-value=3.7e-13  Score=139.65  Aligned_cols=163  Identities=12%  Similarity=0.021  Sum_probs=115.5

Q ss_pred             hhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCcc---------cccccccCCCCcc-cCCC
Q psy7365         324 MDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAP---------QKSYIGYCPQFDA-LNDR  386 (601)
Q Consensus       324 l~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~---------~~~~ig~v~Q~~~-l~~~  386 (601)
                      +++...-+..+++++...   .|+++.++       +..++..+.+.|.....         .+..++|++|++. +++.
T Consensus        93 l~~~~~~g~vi~lvG~nG---sGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~  169 (302)
T 3b9q_A           93 LQLGFRKPAVIMIVGVNG---GGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA  169 (302)
T ss_dssp             CCCCSSSCEEEEEECCTT---SCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred             cccccCCCcEEEEEcCCC---CCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence            344344567778887422   45554332       22344444555543211         1346999999988 8888


Q ss_pred             CCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCC--EEEEECCCCCCCHH
Q psy7365         387 LTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP--LIFLDEPTSGMDPG  464 (601)
Q Consensus       387 lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~--lLlLDEPTsGLD~~  464 (601)
                      +|++|++.+... .+..        ..+++.+|+.+..++++.+||   |||++||+|++.+|+  +|+|| ||+|||+.
T Consensus       170 ~~v~e~l~~~~~-~~~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~  236 (302)
T 3b9q_A          170 TVLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNML  236 (302)
T ss_dssp             HHHHHHHHHHHH-TTCS--------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGH
T ss_pred             HHHHHHHHHHHH-cCCc--------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHH
Confidence            999999987532 2211        135678888888889999999   999999999999999  99999 99999998


Q ss_pred             HHHHHHHHHHHHH-hCCcEEEEEcc---------ChhHHHhhCCEEEEEeCCEE
Q psy7365         465 ARRFLWTCIERAV-SEGRCVILTSH---------NMEECEALCTKLTIMVNGQF  508 (601)
Q Consensus       465 ~~~~i~~lL~~l~-~~G~tVllsTH---------dl~e~~~l~drv~iL~~G~i  508 (601)
                      .+      ++++. +.|.|+|++||         .++.+..+++.|.++..|+.
T Consensus       237 ~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~  284 (302)
T 3b9q_A          237 PQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA  284 (302)
T ss_dssp             HH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred             HH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence            65      24454 35899999999         56677788889999998864

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.20  E-value=4.5e-12  Score=150.53  Aligned_cols=119  Identities=13%  Similarity=0.173  Sum_probs=85.3

Q ss_pred             cccc-cCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCC
Q psy7365         372 SYIG-YCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP  450 (601)
Q Consensus       372 ~~ig-~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~  450 (601)
                      .++| ||||+..   .+|+.+++                     +.++|+.+...+..+++|++|++ +++|++++.+|+
T Consensus       816 aqiG~~Vpq~~~---~l~v~d~I---------------------~~rig~~d~~~~~~stf~~em~~-~a~al~la~~~s  870 (1022)
T 2o8b_B          816 AQMGCYVPAEVC---RLTPIDRV---------------------FTRLGASDRIMSGESTFFVELSE-TASILMHATAHS  870 (1022)
T ss_dssp             HTTTCCEESSEE---EECCCSBE---------------------EEECC---------CHHHHHHHH-HHHHHHHCCTTC
T ss_pred             hheeEEeccCcC---CCCHHHHH---------------------HHHcCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCc
Confidence            3566 9999763   34555543                     11234444444556788998886 999999999999


Q ss_pred             EEEEECCCCCCCHHHH-HHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEE--EecCHHH
Q psy7365         451 LIFLDEPTSGMDPGAR-RFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFT--CLGSATH  516 (601)
Q Consensus       451 lLlLDEPTsGLD~~~~-~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv--~~G~~~~  516 (601)
                      ++||||||+|+|+... ..+|++|+.+.++ |.++|++||+++++..+||++.++ +|++.  ..|++++
T Consensus       871 LlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~~~  939 (1022)
T 2o8b_B          871 LVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENECED  939 (1022)
T ss_dssp             EEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-------
T ss_pred             EEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCccc
Confidence            9999999999999984 5589999999876 999999999999999999999887 58887  4566554

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.20  E-value=2.6e-13  Score=143.49  Aligned_cols=66  Identities=15%  Similarity=0.075  Sum_probs=36.4

Q ss_pred             CcEEEEecCCCCCCHHH------------HHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc
Q psy7365         278 ASTVILDEPTSGVDPYS------------RRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  345 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~------------~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~  345 (601)
                      |+++|+||||+++|+..            ...+...|.++.    +..|+|||+++|.........+.......|++...
T Consensus       232 ~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la----~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~  307 (349)
T 1pzn_A          232 VKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLA----NLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAH  307 (349)
T ss_dssp             EEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHH----HHTTCEEEEEEECC---------------CCCCCT
T ss_pred             CCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHH----HHcCcEEEEEcccccccccccCCccccCCcceEee
Confidence            68999999999999852            234444455442    23589999999998755443333445556666655


Q ss_pred             cC
Q psy7365         346 GS  347 (601)
Q Consensus       346 G~  347 (601)
                      +.
T Consensus       308 ~~  309 (349)
T 1pzn_A          308 SA  309 (349)
T ss_dssp             TC
T ss_pred             cC
Confidence            43

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.17  E-value=3.3e-13  Score=137.77  Aligned_cols=117  Identities=11%  Similarity=0.103  Sum_probs=78.8

Q ss_pred             cccccCCcccccccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHH
Q psy7365         361 LSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLS  440 (601)
Q Consensus       361 igld~~~~~~~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~  440 (601)
                      .+.+......++.+||++|++.+++.+||.|++.|.....+..   ..+.+.+.++    ..+.++.+.+||||||||++
T Consensus        36 ~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~---~~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~  108 (270)
T 3sop_A           36 REEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN---CWEPIEKYIN----EQYEKFLKEEVNIARKKRIP  108 (270)
T ss_dssp             ----CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTT---CSHHHHHHHH----HHHHHHHHHHSCTTCCSSCC
T ss_pred             CCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHH---HHHHHHHHHH----HHHHhhhHHhcCcccchhhh
Confidence            3333333334577999999999999999999998765433211   1122333333    34567788899999999999


Q ss_pred             HHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhH
Q psy7365         441 TAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE  492 (601)
Q Consensus       441 lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e  492 (601)
                      +|||++.   +++|||||.|||+..    .++++.+.+. .+||++.|..+.
T Consensus       109 iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K~D~  152 (270)
T 3sop_A          109 DTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAKADT  152 (270)
T ss_dssp             CCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETTGGG
T ss_pred             hheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEecccc
Confidence            9999876   999999999999987    4556666655 888888887653

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.17  E-value=1.4e-12  Score=151.37  Aligned_cols=62  Identities=23%  Similarity=0.364  Sum_probs=48.4

Q ss_pred             CCcEEEEecCCCCCCHHHHHHH-HHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccc
Q psy7365         277 PASTVILDEPTSGVDPYSRRSI-WELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQ  343 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l-~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv  343 (601)
                      +|+++|||||++|+|+.....+ ++++..+.    +..|.++|++||+.+.. .+||++..+.+|++.
T Consensus       686 ~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~----~~~g~~vl~~TH~~el~-~l~d~~~~v~n~~~~  748 (800)
T 1wb9_A          686 EYSLVLMDEIGRGTSTYDGLSLAWACAENLA----NKIKALTLFATHYFELT-QLPEKMEGVANVHLD  748 (800)
T ss_dssp             TTEEEEEESCCCCSSSSHHHHHHHHHHHHHH----HTTCCEEEEECSCGGGG-GHHHHSTTEEEEEEE
T ss_pred             CCCEEEEECCCCCCChhHHHHHHHHHHHHHH----hccCCeEEEEeCCHHHH-HHhhhhhceEEEEEE
Confidence            4799999999999999877665 78888773    22489999999998765 488887666666554

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.16  E-value=5.4e-11  Score=128.78  Aligned_cols=57  Identities=14%  Similarity=0.088  Sum_probs=48.8

Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecC
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA  339 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~  339 (601)
                      +|+++||||||++||+..+..+.+.|.++     ...|.++|++||+.. ....||+++.+..
T Consensus       355 ~~~~lllDEp~~~LD~~~~~~l~~~l~~~-----~~~~~~~ii~th~~~-~~~~~d~~~~~~~  411 (430)
T 1w1w_A          355 PSPFFVLDEVDAALDITNVQRIAAYIRRH-----RNPDLQFIVISLKNT-MFEKSDALVGVYR  411 (430)
T ss_dssp             CCSEEEESSTTTTCCHHHHHHHHHHHHHH-----CBTTBEEEEECSCHH-HHTTCSEEEEEEE
T ss_pred             CCCEEEeCCCcccCCHHHHHHHHHHHHHH-----hcCCCEEEEEECCHH-HHHhCCEEEEEEE
Confidence            46899999999999999999999999886     234789999999965 4568999999853

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.15  E-value=9.1e-13  Score=128.58  Aligned_cols=60  Identities=18%  Similarity=0.155  Sum_probs=48.7

Q ss_pred             CCc--EEEEecCCCCC--CHHHHHHHHHHHHHHhhhccccCCcEEEEEecch--------hHHHhcCCEEEEecCC
Q psy7365         277 PAS--TVILDEPTSGV--DPYSRRSIWELLIKVYYASHSLSGRTVILTTHYM--------DEADLLGDRIAIIAAG  340 (601)
Q Consensus       277 ~~~--~liLDEPtsgL--D~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl--------~~~~~l~Drv~vL~~G  340 (601)
                      .|+  ++|+||||+++  |+..+..+++.|+++.    +..|.|||+++|+.        ..+..+||++++|...
T Consensus       121 ~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~----~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~  192 (235)
T 2w0m_A          121 GYGKARLVIDSVSALFLDKPAMARKISYYLKRVL----NKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM  192 (235)
T ss_dssp             CSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHH----HHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred             CCCceEEEEECchHhhcCCHHHHHHHHHHHHHHH----HhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence            368  99999999887  9988888999988873    23589999999999        5588899999999754

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.14  E-value=3.6e-12  Score=135.15  Aligned_cols=163  Identities=12%  Similarity=0.032  Sum_probs=116.5

Q ss_pred             hhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCcc---------cccccccCCCCcc-cCCC
Q psy7365         324 MDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSAP---------QKSYIGYCPQFDA-LNDR  386 (601)
Q Consensus       324 l~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~~---------~~~~ig~v~Q~~~-l~~~  386 (601)
                      +++...-+..+++++...   .|+++.+       ++..++..+.+.|.....         .+..++|++|++. +++.
T Consensus       150 l~l~~~~g~vi~lvG~nG---sGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~  226 (359)
T 2og2_A          150 LQLGFRKPAVIMIVGVNG---GGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA  226 (359)
T ss_dssp             CCCCSSSSEEEEEECCTT---SCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred             cceecCCCeEEEEEcCCC---ChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence            333344567778886422   4555433       222344444555543211         1356999999988 8888


Q ss_pred             CCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCC--EEEEECCCCCCCHH
Q psy7365         387 LTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP--LIFLDEPTSGMDPG  464 (601)
Q Consensus       387 lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~--lLlLDEPTsGLD~~  464 (601)
                      +++++++.+... .+..        ..+++.+|+.+..++++.+||   |||++||+|++.+|+  +|+|| ||+|+|+.
T Consensus       227 ~tv~e~l~~~~~-~~~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~  293 (359)
T 2og2_A          227 TVLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNML  293 (359)
T ss_dssp             HHHHHHHHHHHH-TTCS--------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGH
T ss_pred             hhHHHHHHHHHh-CCCH--------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHH
Confidence            999999987532 2211        135678898888888999999   999999999999999  99999 99999998


Q ss_pred             HHHHHHHHHHHHHh-CCcEEEEEcc---------ChhHHHhhCCEEEEEeCCEE
Q psy7365         465 ARRFLWTCIERAVS-EGRCVILTSH---------NMEECEALCTKLTIMVNGQF  508 (601)
Q Consensus       465 ~~~~i~~lL~~l~~-~G~tVllsTH---------dl~e~~~l~drv~iL~~G~i  508 (601)
                      ++.      +++.+ .|.|+|++||         .+..+..++..|.++..|+.
T Consensus       294 ~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~  341 (359)
T 2og2_A          294 PQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA  341 (359)
T ss_dssp             HHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred             HHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence            653      34443 4899999999         45677778889999888863

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.14  E-value=2e-12  Score=136.97  Aligned_cols=123  Identities=16%  Similarity=0.132  Sum_probs=89.8

Q ss_pred             eeecceEEeec-----ccCCCCCCCccccchhhhHHHhccCCCC-CCeeEEEEc-cccCCCchHHhcccEEEEccCCCCC
Q psy7365          68 GISDTSLEEQP-----LGPSGITLGLHTLGLEFVSRSMLMGMLP-VSSGTAKIY-DHDIRTDMTTIRRSLGVCPQYNALF  140 (601)
Q Consensus        68 ~~~~~~~~~~~-----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~-~~~G~v~~~-g~~~~~~~~~~~~~ig~v~Q~~~~~  140 (601)
                      +++++++.+..     +||||+  |||||      .++|+|+.+ |++|+|.++ |.+..   ...+..++++||++.++
T Consensus       205 gl~~L~~~~~G~~~~lvG~sG~--GKSTL------ln~L~g~~~~~~~G~I~~~~G~g~~---tt~~~~i~~v~q~~~l~  273 (358)
T 2rcn_A          205 GLKPLEEALTGRISIFAGQSGV--GKSSL------LNALLGLQNEILTNDVSNVSGLGQH---TTTAARLYHFPHGGDVI  273 (358)
T ss_dssp             THHHHHHHHTTSEEEEECCTTS--SHHHH------HHHHHCCSSCCCCC----------------CCCEEEECTTSCEEE
T ss_pred             CHHHHHHhcCCCEEEEECCCCc--cHHHH------HHHHhccccccccCCccccCCCCcc---ceEEEEEEEECCCCEec
Confidence            45666654322     999999  56654      579999999 999999987 76542   23456799999999899


Q ss_pred             CCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhH
Q psy7365         141 DKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAW  207 (601)
Q Consensus       141 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~  207 (601)
                      +.++++|+   .  +.++++++...++.++++.+|+.++.+..+.+|| ||+||+++|++++....+
T Consensus       274 dtpgv~e~---~--l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli~~~R~  334 (358)
T 2rcn_A          274 DSPGVREF---G--LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAIAETRF  334 (358)
T ss_dssp             ECHHHHTC---C--CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSSCHHHH
T ss_pred             CcccHHHh---h--hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCCCHHHH
Confidence            89999984   2  3456777777888899999999999999999999 999999998887766543

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.12  E-value=6.1e-13  Score=128.32  Aligned_cols=28  Identities=11%  Similarity=0.019  Sum_probs=25.0

Q ss_pred             cEEEEecCCCCCCHHHHHHHHHHHHHHh
Q psy7365         279 STVILDEPTSGVDPYSRRSIWELLIKVY  306 (601)
Q Consensus       279 ~~liLDEPtsgLD~~~~~~l~~~l~~l~  306 (601)
                      ..+++|||||++|+.....+++.|.++.
T Consensus       170 ~~~~~~~~~Sal~~~~~~~l~~~l~~~~  197 (210)
T 1pui_A          170 NGDVQVETFSSLKKQGVDKLRQKLDTWF  197 (210)
T ss_dssp             CSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence            5678999999999999999999998863

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.09  E-value=4.7e-11  Score=140.37  Aligned_cols=100  Identities=25%  Similarity=0.298  Sum_probs=77.6

Q ss_pred             HHHHcCCCcccccccCcCChHHHHHHHHHHHH--hCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHhC-CcEEEEEccC
Q psy7365         414 SLNKFALGHYSDREVRTLSGGNKRKLSTAIAL--LGNTPLIFLDEPTSGMDPGARRFL-WTCIERAVSE-GRCVILTSHN  489 (601)
Q Consensus       414 lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL--~~~P~lLlLDEPTsGLD~~~~~~i-~~lL~~l~~~-G~tVllsTHd  489 (601)
                      ++.++|+.   +.....+|+|++++..+|+++  +.+|+++||||||+|+|+..+..+ |.+++.+.++ |+++|++||+
T Consensus       708 i~~~ig~~---d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~  784 (934)
T 3thx_A          708 ILARVGAG---DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF  784 (934)
T ss_dssp             EEEECC------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC
T ss_pred             HHHhcCch---hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc
Confidence            34444543   334556888888888888888  999999999999999999998888 8888888764 9999999999


Q ss_pred             hhHHHhhCCEEEEEeCCEEEEecCHHHH
Q psy7365         490 MEECEALCTKLTIMVNGQFTCLGSATHL  517 (601)
Q Consensus       490 l~e~~~l~drv~iL~~G~iv~~G~~~~L  517 (601)
                      .+.+ .+||++..+.+|++.+.++++++
T Consensus       785 ~el~-~lad~~~~v~ng~v~~~~~~~~l  811 (934)
T 3thx_A          785 HELT-ALANQIPTVNNLHVTALTTEETL  811 (934)
T ss_dssp             GGGG-GGGGTCTTEEEEEEEEEEETTEE
T ss_pred             HHHH-HHhcccceeEeeEEEEEecCCcE
Confidence            6654 68999999999999998887654

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.09  E-value=8.1e-14  Score=145.39  Aligned_cols=109  Identities=12%  Similarity=0.000  Sum_probs=69.9

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCC--------CCCeeEEEEccccCCCc----------------hHHhcccEEEE-
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGML--------PVSSGTAKIYDHDIRTD----------------MTTIRRSLGVC-  133 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~--------~~~~G~v~~~g~~~~~~----------------~~~~~~~ig~v-  133 (601)
                      +|||||  |||||      .++|.|+.        .|+.|+|.++|.++...                ....++.++++ 
T Consensus        10 ~G~~Ga--GKTTl------l~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~   81 (318)
T 1nij_A           10 TGFLGA--GKTTL------LRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL   81 (318)
T ss_dssp             EESSSS--SCHHH------HHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred             EecCCC--CHHHH------HHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence            899999  56655      56888886        78999999999987532                12334568877 


Q ss_pred             --ccCCCCCCCCCHHHHHHHhH--hh---c-CCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhh
Q psy7365         134 --PQYNALFDKLTVEEHMWFYS--QL---K-QVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD  196 (601)
Q Consensus       134 --~Q~~~~~~~~tv~e~l~~~~--~~---~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~  196 (601)
                        +|++.++++.++.|++.++.  ..   + ..+......++..++..+++.+..++.. +||+||+||+.
T Consensus        82 ~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~  151 (318)
T 1nij_A           82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGY  151 (318)
T ss_dssp             HHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHT
T ss_pred             hHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHh
Confidence              78887777888888775431  10   0 0010011112233445566666555444 89999999975

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.09  E-value=1.5e-13  Score=142.63  Aligned_cols=151  Identities=13%  Similarity=0.105  Sum_probs=106.1

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccccccccccccccccCCcccccccccCCCCcccCCCCCHHH-HHHHhHHhc
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPRE-HLEFYSRVR  400 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~~~g~g~~igld~~~~~~~~~ig~v~Q~~~l~~~lTv~E-~L~~~~~~~  400 (601)
                      +++++-...++.+++++.-.   .|++++++--.+  ..   .      -+-++|++|++.+|. .|+++ |+.+..   
T Consensus       117 ~~vsl~i~~Ge~vaIvGpsG---sGKSTLl~lL~g--l~---~------G~I~~~v~q~~~lf~-~ti~~~ni~~~~---  178 (305)
T 2v9p_A          117 KLWLKGIPKKNCLAFIGPPN---TGKSMLCNSLIH--FL---G------GSVLSFANHKSHFWL-ASLADTRAALVD---  178 (305)
T ss_dssp             HHHHHTCTTCSEEEEECSSS---SSHHHHHHHHHH--HH---T------CEEECGGGTTSGGGG-GGGTTCSCEEEE---
T ss_pred             ccceEEecCCCEEEEECCCC---CcHHHHHHHHhh--hc---C------ceEEEEecCcccccc-ccHHHHhhccCc---
Confidence            77888888899999997522   566655442111  01   0      112578899987776 47776 776531   


Q ss_pred             CCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC
Q psy7365         401 NLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEG  480 (601)
Q Consensus       401 g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G  480 (601)
                      ...     ..+.+.++.+ |.+..+  ...||||||||   |||++.+|+|||    |++||+.++..+..         
T Consensus       179 ~~~-----~~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~---------  234 (305)
T 2v9p_A          179 DAT-----HACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY---------  234 (305)
T ss_dssp             EEC-----HHHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG---------
T ss_pred             ccc-----HHHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH---------
Confidence            111     1345556654 444444  77999999999   999999999999    99999999888862         


Q ss_pred             cEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHh
Q psy7365         481 RCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKY  521 (601)
Q Consensus       481 ~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~  521 (601)
                           .||+++.+ ..|||| +|++|+++..|+++++...|
T Consensus       235 -----ltH~~~~~-~~aD~i-vl~~G~iv~~g~~~el~~~y  268 (305)
T 2v9p_A          235 -----LHSRVQTF-RFEQPC-TDESGEQPFNITDADWKSFF  268 (305)
T ss_dssp             -----GTTTEEEE-ECCCCC-CCC---CCCCCCHHHHHHHH
T ss_pred             -----HhCCHHHH-HhCCEE-EEeCCEEEEeCCHHHHHHHH
Confidence                 19998875 589999 99999999999999994433

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.08  E-value=3.3e-14  Score=136.01  Aligned_cols=171  Identities=12%  Similarity=0.051  Sum_probs=99.9

Q ss_pred             cccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcC
Q psy7365          78 PLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ  157 (601)
Q Consensus        78 ~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~  157 (601)
                      -+|||||  ||||     ++ ++|++   |++|.+.++|.++..     ....|+++|....++..++.+++.+.+..+.
T Consensus         7 l~G~~Ga--GKST-----l~-~~L~~---~~~g~~~i~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   70 (189)
T 2bdt_A            7 ITGPAGV--GKST-----TC-KRLAA---QLDNSAYIEGDIINH-----MVVGGYRPPWESDELLALTWKNITDLTVNFL   70 (189)
T ss_dssp             EECSTTS--SHHH-----HH-HHHHH---HSSSEEEEEHHHHHT-----TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCC--cHHH-----HH-HHHhc---ccCCeEEEcccchhh-----hhccccccCccchhHHHHHHHHHHHHHHHHH
Confidence            3899999  4555     44 57765   778999999876532     1235777877655556788888876543321


Q ss_pred             CChHHHHHHHHHHHHHcCCCcccCCccccC--ChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchh
Q psy7365         158 VPKDLAQLEISNMIGDLGIPHKRTSLANTL--SGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDY  235 (601)
Q Consensus       158 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L--SgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~  235 (601)
                      ...      ...+++.+. .....+...++  |+||+|++.++... -++..                            
T Consensus        71 ~~~------~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~-~~~e~----------------------------  114 (189)
T 2bdt_A           71 LAQ------NDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILW-TNREE----------------------------  114 (189)
T ss_dssp             HTT------CEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEE-CCHHH----------------------------
T ss_pred             hcC------CcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEe-CCHHH----------------------------
Confidence            000      000111111 11111222344  88999887653211 11100                            


Q ss_pred             hHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCc
Q psy7365         236 AIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGR  315 (601)
Q Consensus       236 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~  315 (601)
                         ++.+                                   |+...+|+   ++|+..+.. ++.+..++     ..+.
T Consensus       115 ---l~~R-----------------------------------~~~r~~d~---~ld~~~~~~-~~~~~~~~-----~~~~  147 (189)
T 2bdt_A          115 ---LLRR-----------------------------------DALRKKDE---QMGERCLEL-VEEFESKG-----IDER  147 (189)
T ss_dssp             ---HHHH-----------------------------------TTTSCC-------CGGGGHH-HHHHHHTT-----CCTT
T ss_pred             ---HHHH-----------------------------------HHhccccc---cCCHHHHHH-HHHHhhcC-----CCcc
Confidence               1111                                   23334563   899988888 88888762     3478


Q ss_pred             EEEEEecc-hhHHHhcCCEEEEecCCccccccCcc
Q psy7365         316 TVILTTHY-MDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       316 TVI~~tHd-l~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                      ++|.+||. ++++.+.||+|+  .+|+++..|++.
T Consensus       148 ~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~  180 (189)
T 2bdt_A          148 YFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGD  180 (189)
T ss_dssp             SEEECSSSCGGGHHHHHHHHH--HCGGGSCC----
T ss_pred             EEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCC
Confidence            99999999 999999999998  999998887653

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.08  E-value=1.2e-12  Score=129.47  Aligned_cols=56  Identities=16%  Similarity=0.144  Sum_probs=43.6

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCC--CeeEEEEccccCCCchHHhcccEEEEccCCCCCCCCCH
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPV--SSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTV  145 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~--~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv  145 (601)
                      +|||||  |||||      .++|+|+++|  .+|.|.+.+++...   ..+.+++|+||++..|+.+++
T Consensus        22 ~GpsGs--GKSTL------lk~L~g~~~p~~~~g~v~~ttr~~~~---~e~~gi~y~fq~~~~f~~~~~   79 (219)
T 1s96_A           22 SAPSGA--GKSSL------IQALLKTQPLYDTQVSVSHTTRQPRP---GEVHGEHYFFVNHDEFKEMIS   79 (219)
T ss_dssp             ECCTTS--CHHHH------HHHHHHHSCTTTEEECCCEECSCCCT---TCCBTTTBEECCHHHHHHHHH
T ss_pred             ECCCCC--CHHHH------HHHHhccCCCCceEEEEEecCCCCCc---ccccCceEEECCHHHHHHHHh
Confidence            899999  56654      5799999996  79999999887643   235679999999877766655

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.07  E-value=6.5e-13  Score=132.76  Aligned_cols=65  Identities=20%  Similarity=0.172  Sum_probs=49.0

Q ss_pred             cccCCCCCCCccccchhhhHHHhcc---CCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhH
Q psy7365          78 PLGPSGITLGLHTLGLEFVSRSMLM---GMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYS  153 (601)
Q Consensus        78 ~~g~~g~~~g~~~~g~~~~~~~~l~---Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~  153 (601)
                      -+|||||  ||||+     + ++|+   |+..|++|+|.++|.+...   .....++.++|++.+++..++.+++.+..
T Consensus        32 l~G~~Gs--GKSTl-----~-k~La~~lg~~~~~~G~i~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~v~~~l~~~l   99 (246)
T 2bbw_A           32 ILGPPGS--GKGTV-----C-QRIAQNFGLQHLSSGHFLRENIKAST---EVGEMAKQYIEKSLLVPDHVITRLMMSEL   99 (246)
T ss_dssp             EECCTTS--SHHHH-----H-HHHHHHHCCCCEEHHHHHHHHHHTTC---HHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             EECCCCC--CHHHH-----H-HHHHHHhCCeEecHHHHHHHHHhcCC---hHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            3999999  56554     4 6889   9999999999888765422   12334566788888888899999998743

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.06  E-value=6.2e-11  Score=120.66  Aligned_cols=146  Identities=14%  Similarity=0.118  Sum_probs=86.9

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCC
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV  158 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~  158 (601)
                      .||||+  |||||     ++ .++|.+.  .|.+ +.|.++..     ...+.|+..+..      . +.+.-.+...+.
T Consensus        36 ~G~~Gs--GKTtl-----~~-~l~~~~~--~g~~-~~g~~~~~-----~~~v~~~~~e~~------~-~~~~~r~~~~g~   92 (279)
T 1nlf_A           36 VSPGGA--GKSML-----AL-QLAAQIA--GGPD-LLEVGELP-----TGPVIYLPAEDP------P-TAIHHRLHALGA   92 (279)
T ss_dssp             EESTTS--SHHHH-----HH-HHHHHHH--TCCC-TTCCCCCC-----CCCEEEEESSSC------H-HHHHHHHHHHHT
T ss_pred             EcCCCC--CHHHH-----HH-HHHHHHh--cCCC-cCCCccCC-----CccEEEEECCCC------H-HHHHHHHHHHHh
Confidence            899999  56654     44 5555443  4655 33544321     235677654432      1 122111111122


Q ss_pred             ChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHH
Q psy7365         159 PKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIV  238 (601)
Q Consensus       159 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  238 (601)
                      ..+  ..+..++++.+++.+..++.+..||+||+|++.                           +              
T Consensus        93 ~~~--~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i~---------------------------~--------------  129 (279)
T 1nlf_A           93 HLS--AEERQAVADGLLIQPLIGSLPNIMAPEWFDGLK---------------------------R--------------  129 (279)
T ss_dssp             TSC--HHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHH---------------------------H--------------
T ss_pred             hcC--hhhhhhccCceEEeecCCCCcccCCHHHHHHHH---------------------------H--------------
Confidence            111  123566788999988889999999999988752                           0              


Q ss_pred             hhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCC--CCCHHHH---HHHHHHHHHHhhhccccC
Q psy7365         239 AINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTS--GVDPYSR---RSIWELLIKVYYASHSLS  313 (601)
Q Consensus       239 ~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPts--gLD~~~~---~~l~~~l~~l~~~~~~~~  313 (601)
                      ++.                                   .|+++|+||||+  ++|+...   ..+.+.|+++.    +..
T Consensus       130 l~~-----------------------------------~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~----~~~  170 (279)
T 1nlf_A          130 AAE-----------------------------------GRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIA----ADT  170 (279)
T ss_dssp             HHT-----------------------------------TCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHH----HHH
T ss_pred             hcC-----------------------------------CCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHH----HHc
Confidence            111                                   268999999999  9998544   66667776662    235


Q ss_pred             CcEEEEEecchhHHHh
Q psy7365         314 GRTVILTTHYMDEADL  329 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~  329 (601)
                      |+|||+++|+......
T Consensus       171 g~tvi~i~H~~~~~~~  186 (279)
T 1nlf_A          171 GCSIVFLHHASKGAAM  186 (279)
T ss_dssp             CCEEEEEEEC------
T ss_pred             CCEEEEEecCCCcccc
Confidence            8999999999876643

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.05  E-value=3.3e-10  Score=116.06  Aligned_cols=98  Identities=13%  Similarity=0.084  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHcCCCcccccccCcCChHH-HHHHHHHHHHhCCCCEEEEECCCC---C---CCH-HHHHHHHHHHHHHHhC
Q psy7365         408 NTIVNESLNKFALGHYSDREVRTLSGGN-KRKLSTAIALLGNTPLIFLDEPTS---G---MDP-GARRFLWTCIERAVSE  479 (601)
Q Consensus       408 ~~~~~~lLe~~~L~~~~~~~~~~LSgGq-kQRl~lA~AL~~~P~lLlLDEPTs---G---LD~-~~~~~i~~lL~~l~~~  479 (601)
                      .+.++++++..++.  ....+..+|.++ +||+. |+++.++|+++|+||||+   +   +|+ .....+++.|++++++
T Consensus       109 ~~~~~~~l~~~~l~--i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~  185 (296)
T 1cr0_A          109 DQWFDELFGNDTFH--LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKS  185 (296)
T ss_dssp             HHHHHHHHSSSCEE--EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCEE--EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            34455555433332  233446788888 66776 999999999999999999   5   566 6778899999998765


Q ss_pred             -CcEEEEEccCh--h--------------------HHHhhCCEEEEEeCCEE
Q psy7365         480 -GRCVILTSHNM--E--------------------ECEALCTKLTIMVNGQF  508 (601)
Q Consensus       480 -G~tVllsTHdl--~--------------------e~~~l~drv~iL~~G~i  508 (601)
                       |+|||++||+.  +                    .++.+||+|++|++|+.
T Consensus       186 ~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          186 TGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             HCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred             hCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence             99999999995  5                    78999999999999875

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.04  E-value=4.8e-12  Score=131.10  Aligned_cols=110  Identities=11%  Similarity=0.098  Sum_probs=75.3

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEE---ccccCCCchHHhc-ccEEEEccCCCC-----CCCCCHHHHH
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKI---YDHDIRTDMTTIR-RSLGVCPQYNAL-----FDKLTVEEHM  149 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~---~g~~~~~~~~~~~-~~ig~v~Q~~~~-----~~~~tv~e~l  149 (601)
                      +||||+  |||||      .++|+ +++|++|+|.+   +|++++......+ +.+|++||.|.+     |+++|+ ||+
T Consensus       171 ~G~sG~--GKSTL------ln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l  240 (302)
T 2yv5_A          171 AGPSGV--GKSSI------LSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-REV  240 (302)
T ss_dssp             ECSTTS--SHHHH------HHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GGG
T ss_pred             ECCCCC--CHHHH------HHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HHH
Confidence            999999  56554      46888 99999999999   9988765432223 368999999854     378899 888


Q ss_pred             --HHh------HhhcC-CChHHHHHHHHHHHHHcCCCc-ccCCccccCChHHHhhhhch
Q psy7365         150 --WFY------SQLKQ-VPKDLAQLEISNMIGDLGIPH-KRTSLANTLSGGMQRKLDNV  198 (601)
Q Consensus       150 --~~~------~~~~~-~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qr~~~~  198 (601)
                        .|+      +...+ ....+...++.++++.+||.+ ..++++..|||..++++++|
T Consensus       241 ~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~  299 (302)
T 2yv5_A          241 RNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELC  299 (302)
T ss_dssp             GGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHS
T ss_pred             HHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence              454      12223 233344567899999999996 78999999999666666544

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.01  E-value=2.1e-11  Score=129.21  Aligned_cols=50  Identities=20%  Similarity=0.146  Sum_probs=38.7

Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCC
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG  340 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~G  340 (601)
                      |+++++||||   |+.+...+.    ++.     ..|.++++++|+.+.+ ..+||++.|..|
T Consensus       197 PdvillDEp~---d~e~~~~~~----~~~-----~~G~~vl~t~H~~~~~-~~~dRli~l~~~  246 (356)
T 3jvv_A          197 PDIILVGEMR---DLETIRLAL----TAA-----ETGHLVFGTLHTTSAA-KTIDRVVDVFPA  246 (356)
T ss_dssp             CSEEEESCCC---SHHHHHHHH----HHH-----HTTCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred             cCEEecCCCC---CHHHHHHHH----HHH-----hcCCEEEEEEccChHH-HHHHHHhhhcCc
Confidence            5999999999   665544333    331     3599999999999988 789999998665

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.01  E-value=6.1e-14  Score=148.76  Aligned_cols=58  Identities=21%  Similarity=0.072  Sum_probs=41.8

Q ss_pred             CCcEEEEec---CC------CCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecC
Q psy7365         277 PASTVILDE---PT------SGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA  339 (601)
Q Consensus       277 ~~~~liLDE---Pt------sgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~  339 (601)
                      .|++++|||   |+      .++|+..+..+.+.|.++.    +..|.++++++|. ++..++++++.++++
T Consensus       277 ~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~----~~~~~~ililde~-~~~~r~~~~i~~i~~  343 (365)
T 1lw7_A          277 PFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLL----DKYKVPYIEIESP-SYLDRYNQVKAVIEK  343 (365)
T ss_dssp             CCSEEEEEECCCC-----------CCSHHHHHHHHHHHH----HGGGCCCEEEECS-SHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHH----HHcCCCEEEeCCC-CHHHHHHHHHHHHHH
Confidence            368999999   65      5899999999999998763    2247899999975 577778888777653

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.98  E-value=6e-13  Score=144.79  Aligned_cols=124  Identities=13%  Similarity=0.114  Sum_probs=98.0

Q ss_pred             cccccccCCCC-cccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCC
Q psy7365         370 QKSYIGYCPQF-DALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGN  448 (601)
Q Consensus       370 ~~~~ig~v~Q~-~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~  448 (601)
                      .++.++|++|+ ..+++.+++.+|+.+.+.+++...             -......+ .+..||+|| ||++||   +.+
T Consensus       211 l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~-------------~~v~~~ld-~l~~lS~g~-qrvslA---l~~  272 (438)
T 2dpy_A          211 RARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG-------------QHVLLIMD-SLTRYAMAQ-REIALA---IGE  272 (438)
T ss_dssp             HHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT-------------CEEEEEEE-CHHHHHHHH-HHHHHH---TTC
T ss_pred             cCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC-------------CCHHHHHH-hHHHHHHHH-HHHHHH---hCC
Confidence            35679999995 556778899999887654432100             00111122 367899999 999999   889


Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHHh---C-Cc-----EEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         449 TPLIFLDEPTSGMDPGARRFLWTCIERAVS---E-GR-----CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       449 P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~---~-G~-----tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      |++      |+|||+..+..++++++++.+   + |.     ||+++|||++  +.+||++++|.+|+++.+++++++..
T Consensus       273 p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~~~~~~~~  344 (438)
T 2dpy_A          273 PPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLSRRLAEAGH  344 (438)
T ss_dssp             CCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEECHHHHHTTC
T ss_pred             Ccc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEEeCCHHHccC
Confidence            998      999999999999999999865   3 74     9999999999  78999999999999999999988754

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.97  E-value=5.5e-11  Score=118.86  Aligned_cols=170  Identities=9%  Similarity=0.083  Sum_probs=106.1

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccccccccc-ccccccccCCcccccccccCCCCcccCCCCCHHHHHHHhHHhc
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFAR-GYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVR  400 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~~~g~-g~~igld~~~~~~~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~  400 (601)
                      +++++...-+..+++.+.-   .+|++++.+.-.+. +.. .++    ..++.++|++|+. +++.+|+.+++.+....+
T Consensus        16 ~~isl~i~~g~iigI~G~~---GsGKSTl~k~L~~~lG~~-~~~----~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~   86 (245)
T 2jeo_A           16 ENLYFQSMRPFLIGVSGGT---ASGKSTVCEKIMELLGQN-EVE----QRQRKVVILSQDR-FYKVLTAEQKAKALKGQY   86 (245)
T ss_dssp             -------CCSEEEEEECST---TSSHHHHHHHHHHHHTGG-GSC----GGGCSEEEEEGGG-GBCCCCHHHHHHHHTTCC
T ss_pred             cceeccCCCCEEEEEECCC---CCCHHHHHHHHHHHhchh-ccc----ccCCceEEEeCCc-CccccCHhHhhhhhccCC
Confidence            8888888888888888642   25666554421110 111 111    2456799999984 788899999987765443


Q ss_pred             CCCh--hHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Q psy7365         401 NLPS--VLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVS  478 (601)
Q Consensus       401 g~~~--~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~  478 (601)
                      +...  ....+.+.+.|+.+  .+..++++..||+||+||+.+ ++++.+|+++|||||....|..    +    .++  
T Consensus        87 ~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~----l----~~~--  153 (245)
T 2jeo_A           87 NFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE----I----RDM--  153 (245)
T ss_dssp             CTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH----H----HTT--
T ss_pred             CCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH----H----HHh--
Confidence            3321  11123345555543  455678899999999999988 5888999999999999888764    2    222  


Q ss_pred             CCcEEEEEccChhHH-HhhCCEEEEEeCCEEEEecCHHHHHHHh
Q psy7365         479 EGRCVILTSHNMEEC-EALCTKLTIMVNGQFTCLGSATHLKSKY  521 (601)
Q Consensus       479 ~G~tVllsTHdl~e~-~~l~drv~iL~~G~iv~~G~~~~L~~~~  521 (601)
                      .+.+|+++||+...+ ..+|+++   ++|+     +++++.+++
T Consensus       154 ~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~~~  189 (245)
T 2jeo_A          154 FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILTQY  189 (245)
T ss_dssp             CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHHHH
T ss_pred             cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHHHH
Confidence            378999999975444 5556555   6674     678877654

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.92  E-value=7.5e-10  Score=129.91  Aligned_cols=96  Identities=11%  Similarity=0.085  Sum_probs=70.5

Q ss_pred             HHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHh-CCcEEEEEccCh
Q psy7365         413 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW-TCIERAVS-EGRCVILTSHNM  490 (601)
Q Consensus       413 ~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~-~lL~~l~~-~G~tVllsTHdl  490 (601)
                      +++.++++.+...+..+++|+||+|++.++++ +.+|+++||||||+|+||..+..+. .+++.+.+ .|.|+|++|||+
T Consensus       718 ~i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~  796 (918)
T 3thx_B          718 GIFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP  796 (918)
T ss_dssp             EEEEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred             HHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH
Confidence            45666777777778889999999999999999 8999999999999999999988886 78888865 599999999998


Q ss_pred             hHHHhhCCEEEE-EeCCEEEE
Q psy7365         491 EECEALCTKLTI-MVNGQFTC  510 (601)
Q Consensus       491 ~e~~~l~drv~i-L~~G~iv~  510 (601)
                      +.+ .+||+.-- +.++++.+
T Consensus       797 el~-~l~~~~~~~v~n~~~~~  816 (918)
T 3thx_B          797 PVC-ELEKNYSHQVGNYHMGF  816 (918)
T ss_dssp             GGG-GHHHHTTTTEEEEEEEE
T ss_pred             HHH-HHHhhcccceEEEEEEE
Confidence            766 46766532 44555544

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.91  E-value=1.1e-11  Score=129.12  Aligned_cols=125  Identities=6%  Similarity=0.005  Sum_probs=90.4

Q ss_pred             cccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCE
Q psy7365         372 SYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPL  451 (601)
Q Consensus       372 ~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~l  451 (601)
                      ++++|++|++.+++. |+.||+.+.. .++.+.....+.+.++|+.++ .+..+.++.+|||||+||+++|++++.+|+|
T Consensus       121 ~~v~~v~qd~~~~~~-t~~e~~~~~~-~~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~i  197 (312)
T 3aez_A          121 PRVDLVTTDGFLYPN-AELQRRNLMH-RKGFPESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDI  197 (312)
T ss_dssp             CCEEEEEGGGGBCCH-HHHHHTTCTT-CTTSGGGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSE
T ss_pred             CeEEEEecCccCCcc-cHHHHHHHHH-hcCCChHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCE
Confidence            568999999888887 9999986532 235444444566788899888 6666788899999999999999999999999


Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHH-HhhCCEEEEEeCCE
Q psy7365         452 IFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC-EALCTKLTIMVNGQ  507 (601)
Q Consensus       452 LlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~-~~l~drv~iL~~G~  507 (601)
                      ||||||+..+|+.. ..    +.++  -+. .|+++|+.+.. +++++|.+.+.+|+
T Consensus       198 lIlDep~~~~d~~~-~~----l~~~--~D~-~I~V~a~~~~~~~R~i~R~~~~rd~~  246 (312)
T 3aez_A          198 LILEGLNVLQTGPT-LM----VSDL--FDF-SLYVDARIEDIEQWYVSRFLAMRTTA  246 (312)
T ss_dssp             EEEECTTTTCCCSS-CC----GGGG--CSE-EEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred             EEECCccccCCcch-HH----HHHh--cCc-EEEEECCHHHHHHHHHHHHHHHHhcc
Confidence            99999999998621 11    1111  133 46667777654 44566665555543

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.86  E-value=3.7e-10  Score=119.73  Aligned_cols=61  Identities=20%  Similarity=0.095  Sum_probs=44.4

Q ss_pred             eecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEc-cCCC
Q psy7365          69 ISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCP-QYNA  138 (601)
Q Consensus        69 ~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~-Q~~~  138 (601)
                      ++++||.+.+      +|||||  |||||      .++|+|+++|++|.|+++|..-. .....++.+++++ |++.
T Consensus       165 ~~~l~~~i~~G~~i~ivG~sGs--GKSTl------l~~l~~~~~~~~g~I~ie~~~e~-~~~~~~~~v~~v~~q~~~  232 (361)
T 2gza_A          165 MSFLRRAVQLERVIVVAGETGS--GKTTL------MKALMQEIPFDQRLITIEDVPEL-FLPDHPNHVHLFYPSEAK  232 (361)
T ss_dssp             HHHHHHHHHTTCCEEEEESSSS--CHHHH------HHHHHTTSCTTSCEEEEESSSCC-CCTTCSSEEEEECC----
T ss_pred             HHHHHHHHhcCCEEEEECCCCC--CHHHH------HHHHHhcCCCCceEEEECCcccc-CccccCCEEEEeecCccc
Confidence            3999999987      999999  56554      57999999999999999985321 1222467899999 7654

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.86  E-value=1.7e-12  Score=136.63  Aligned_cols=82  Identities=11%  Similarity=0.043  Sum_probs=64.2

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      ++.++++++.|+.    ..+++++||++.+      +||||+  |||||      .++|+|+++|++|+|.+.|.++.+.
T Consensus        29 ~ie~~~~~~~~~~----~~~l~~i~~~~~~g~~v~i~G~~Ga--GKSTL------l~~l~g~~~~~~g~v~i~~~d~~~~   96 (337)
T 2qm8_A           29 LAESRRADHRAAV----RDLIDAVLPQTGRAIRVGITGVPGV--GKSTT------IDALGSLLTAAGHKVAVLAVDPSST   96 (337)
T ss_dssp             HHTCSSHHHHHHH----HHHHHHHGGGCCCSEEEEEECCTTS--CHHHH------HHHHHHHHHHTTCCEEEEEECGGGG
T ss_pred             HHeeCCcccccCh----HHHHHhCCcccCCCeEEEEECCCCC--CHHHH------HHHHHHhhhhCCCEEEEEEEcCccc
Confidence            4567888888753    4589999998876      999999  56654      5699999999999999999887432


Q ss_pred             h-----HHhcccEEEEccCCCCCCC
Q psy7365         123 M-----TTIRRSLGVCPQYNALFDK  142 (601)
Q Consensus       123 ~-----~~~~~~ig~v~Q~~~~~~~  142 (601)
                      .     ...+.++|++||++.+|..
T Consensus        97 ~~~~~~~~~~~~i~~v~q~~~~~~~  121 (337)
T 2qm8_A           97 RTGGSILGDKTRMARLAIDRNAFIR  121 (337)
T ss_dssp             SSCCCSSCCGGGSTTGGGCTTEEEE
T ss_pred             ccccchHHHhhhheeeccCcccccc
Confidence            1     2346679999999988754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.85  E-value=4.6e-11  Score=123.52  Aligned_cols=99  Identities=12%  Similarity=0.155  Sum_probs=67.0

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEE---ccccCCCchHHhc-ccEEEEccCCC----------------
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKI---YDHDIRTDMTTIR-RSLGVCPQYNA----------------  138 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~---~g~~~~~~~~~~~-~~ig~v~Q~~~----------------  138 (601)
                      +||||+  |||||      .++|+|+.+|++|+|.+   +|++++......+ +.+|++||.|.                
T Consensus       175 ~G~sG~--GKSTl------l~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~  246 (301)
T 1u0l_A          175 AGLSGV--GKSSL------LNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKH  246 (301)
T ss_dssp             ECSTTS--SHHHH------HHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGG
T ss_pred             ECCCCC--cHHHH------HHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHH
Confidence            999999  56654      57999999999999999   8988764322222 36899999984                


Q ss_pred             CCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC-cccCCccccCCh
Q psy7365         139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP-HKRTSLANTLSG  189 (601)
Q Consensus       139 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSg  189 (601)
                      +|+++|+ ||+.|.. +..  ..+...++.++++.+||+ +..++++.+||+
T Consensus       247 l~~~~~~-~n~~~~~-~~~--~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse  294 (301)
T 1u0l_A          247 YFKEFGD-KQCFFSD-CNH--VDEPECGVKEAVENGEIAESRYENYVKMFYE  294 (301)
T ss_dssp             GSTTSSS-CCCSSTT-CCS--SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             HHHhccc-ccCcCCC-CcC--CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            5889999 9998863 221  233456788999999996 778899999985

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.84  E-value=5e-11  Score=124.98  Aligned_cols=67  Identities=15%  Similarity=0.016  Sum_probs=53.1

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch--H-----HhcccEEEEccCCCCCCCCCHHHHHHH
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM--T-----TIRRSLGVCPQYNALFDKLTVEEHMWF  151 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~--~-----~~~~~ig~v~Q~~~~~~~~tv~e~l~~  151 (601)
                      +|||||  ||||     ++ ++|+|+++|++|+|.+.|.++....  .     ..+.++.+++|.+.++|.++|++|+.+
T Consensus       135 vG~nGa--GKTT-----ll-~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~  206 (328)
T 3e70_C          135 VGFNGS--GKTT-----TI-AKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH  206 (328)
T ss_dssp             ECCTTS--SHHH-----HH-HHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred             ECCCCC--CHHH-----HH-HHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence            999999  4554     44 6899999999999999999985421  1     123356799999999999999999987


Q ss_pred             hH
Q psy7365         152 YS  153 (601)
Q Consensus       152 ~~  153 (601)
                      +.
T Consensus       207 ~~  208 (328)
T 3e70_C          207 AK  208 (328)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.84  E-value=6.8e-13  Score=130.83  Aligned_cols=168  Identities=9%  Similarity=0.030  Sum_probs=103.0

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccccc---c-ccccccccccCCc----ccccccccCCCCcccCCCCCH-HHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS---F-ARGYYLSLDMKSA----PQKSYIGYCPQFDALNDRLTP-REH  392 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~~---~-g~g~~igld~~~~----~~~~~ig~v~Q~~~l~~~lTv-~E~  392 (601)
                      +++++...-+..+++++...   .|++++++.-   . +..++ +.+....    ..++.++|+||++.+|+.++. .++
T Consensus        14 ~~isl~i~~G~~~~lvGpsG---sGKSTLl~~L~g~~pG~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   89 (218)
T 1z6g_A           14 LVPRGSMNNIYPLVICGPSG---VGKGTLIKKLLNEFPNYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDF   89 (218)
T ss_dssp             --------CCCCEEEECSTT---SSHHHHHHHHHHHSTTTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred             cCCceecCCCCEEEEECCCC---CCHHHHHHHHHhhCCCcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccch
Confidence            67888888889999997421   4555443211   1 22222 3332211    134679999999876654431 111


Q ss_pred             H---HHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHH-----HHHHhCCCCEEEEECCCCCCCHH
Q psy7365         393 L---EFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST-----AIALLGNTPLIFLDEPTSGMDPG  464 (601)
Q Consensus       393 L---~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~l-----A~AL~~~P~lLlLDEPTsGLD~~  464 (601)
                      +   .+....++.+.    ..++++++...+. ..+   .+|||||+||+++     +++++.+|++++|||||+++|..
T Consensus        90 l~~~~~~~~~~g~~~----~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~  161 (218)
T 1z6g_A           90 LEYDNYANNFYGTLK----SEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTE  161 (218)
T ss_dssp             EEEEEETTEEEEEEH----HHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCC
T ss_pred             hhhhhcccccCCCcH----HHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCC
Confidence            1   11222333332    3456667654432 122   5799999999999     88999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh-------CCcEEEEEccChhHHHhhCCEEE
Q psy7365         465 ARRFLWTCIERAVS-------EGRCVILTSHNMEECEALCTKLT  501 (601)
Q Consensus       465 ~~~~i~~lL~~l~~-------~G~tVllsTHdl~e~~~l~drv~  501 (601)
                      +...+.+.+.++.+       .+.+.|+++||++++...+++++
T Consensus       162 ~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii  205 (218)
T 1z6g_A          162 NQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYL  205 (218)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHH
Confidence            88888888876532       45677888888888887776654

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.84  E-value=2.3e-11  Score=114.46  Aligned_cols=82  Identities=18%  Similarity=0.110  Sum_probs=64.9

Q ss_pred             hcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHH
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTT  125 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~  125 (601)
                      .+++++.|++    ..+++++||++.+      +|||||  |||||      .++|+|++ |++|+|.++|.++.... .
T Consensus        10 ~~~~~~~~g~----~~~l~~vsl~i~~Ge~v~L~G~nGa--GKTTL------lr~l~g~l-~~~G~V~~~g~~i~~~~-~   75 (158)
T 1htw_A           10 DEFSMLRFGK----KFAEILLKLHTEKAIMVYLNGDLGA--GKTTL------TRGMLQGI-GHQGNVKSPTYTLVEEY-N   75 (158)
T ss_dssp             SHHHHHHHHH----HHHHHHHHHCCSSCEEEEEECSTTS--SHHHH------HHHHHHHT-TCCSCCCCCTTTCEEEE-E
T ss_pred             CHHHHHHHHH----HHHHhccccccCCCCEEEEECCCCC--CHHHH------HHHHHHhC-CCCCeEEECCEeeeeec-c
Confidence            4567777753    4589999999987      999999  56655      57999999 99999999999874321 1


Q ss_pred             hcccEEEEccCCCCCCCCCHHHHHHH
Q psy7365         126 IRRSLGVCPQYNALFDKLTVEEHMWF  151 (601)
Q Consensus       126 ~~~~ig~v~Q~~~~~~~~tv~e~l~~  151 (601)
                      .+ +  ++||++.+| .+||.||+.+
T Consensus        76 ~~-~--~~~q~~~l~-~ltv~e~l~~   97 (158)
T 1htw_A           76 IA-G--KMIYHFDLY-RLADPEELEF   97 (158)
T ss_dssp             ET-T--EEEEEEECT-TCSCTTHHHH
T ss_pred             CC-C--cceeccccc-cCCcHHHHHH
Confidence            12 2  799999999 9999999965

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.84  E-value=6.3e-11  Score=131.20  Aligned_cols=46  Identities=20%  Similarity=0.185  Sum_probs=38.2

Q ss_pred             ccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEcccc
Q psy7365          65 DSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHD  118 (601)
Q Consensus        65 ~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~  118 (601)
                      +..+++++++.+..      +|||||  ||||     + .++|+|+++|++|.|+++|.+
T Consensus       246 ~~~~l~~l~~~v~~g~~i~I~GptGS--GKTT-----l-L~aL~~~i~~~~giitied~~  297 (511)
T 2oap_1          246 PSGVLAYLWLAIEHKFSAIVVGETAS--GKTT-----T-LNAIMMFIPPDAKVVSIEDTR  297 (511)
T ss_dssp             CHHHHHHHHHHHHTTCCEEEEESTTS--SHHH-----H-HHHHGGGSCTTCCEEEEESSC
T ss_pred             CHHHHHHHHHHHhCCCEEEEECCCCC--CHHH-----H-HHHHHhhCCCCCCEEEEcCcc
Confidence            45678899998866      999999  4554     4 469999999999999999875

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.83  E-value=3.1e-10  Score=111.74  Aligned_cols=61  Identities=16%  Similarity=0.210  Sum_probs=37.2

Q ss_pred             CCcEEEEecCCCCCCHH-------H-----HHHHHHHHHHHhhhccccCCcEEEEEecchhHHHh---------------
Q psy7365         277 PASTVILDEPTSGVDPY-------S-----RRSIWELLIKVYYASHSLSGRTVILTTHYMDEADL---------------  329 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~-------~-----~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~---------------  329 (601)
                      .|+++|+|||++.+|+.       .     ...++..|.++.    +..|.|||+++|.......               
T Consensus       119 ~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~----~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~  194 (243)
T 1n0w_A          119 RYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLA----DEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGN  194 (243)
T ss_dssp             CEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHH----HHHCCEEEEEC-----------------------
T ss_pred             CceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHH----HHcCCEEEEEeeeeecCCCccccCCCcccCCccC
Confidence            36899999999999985       3     233444444442    2348999999997765443               


Q ss_pred             ----cCCEEEEecCCc
Q psy7365         330 ----LGDRIAIIAAGK  341 (601)
Q Consensus       330 ----l~Drv~vL~~Gk  341 (601)
                          +||++++|..|+
T Consensus       195 ~~~~~~d~vi~l~~~~  210 (243)
T 1n0w_A          195 IIAHASTTRLYLRKGR  210 (243)
T ss_dssp             --CCTTCEEEEEEECS
T ss_pred             hhhhcCcEEEEEEEcC
Confidence                789999998653

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.83  E-value=3.4e-09  Score=103.05  Aligned_cols=78  Identities=10%  Similarity=0.002  Sum_probs=66.5

Q ss_pred             cCChHHHHHHHHHHHHhCCCC--EEEEECCCCCC--CHHHHHHHHHHHHHHHh-CCcEEEEEccCh--------hHHHhh
Q psy7365         430 TLSGGNKRKLSTAIALLGNTP--LIFLDEPTSGM--DPGARRFLWTCIERAVS-EGRCVILTSHNM--------EECEAL  496 (601)
Q Consensus       430 ~LSgGqkQRl~lA~AL~~~P~--lLlLDEPTsGL--D~~~~~~i~~lL~~l~~-~G~tVllsTHdl--------~e~~~l  496 (601)
                      ..|.++.++...+.+..++|+  ++++||||+++  |+..++++++.|+++++ .|.|||++||+.        ..++.+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~  182 (235)
T 2w0m_A          103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV  182 (235)
T ss_dssp             SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence            348899988888888888999  99999999887  99999999999999864 599999999999        569999


Q ss_pred             CCEEEEEeCCE
Q psy7365         497 CTKLTIMVNGQ  507 (601)
Q Consensus       497 ~drv~iL~~G~  507 (601)
                      ||+|++|++..
T Consensus       183 ~d~vi~l~~~~  193 (235)
T 2w0m_A          183 ADGIIRFRRMI  193 (235)
T ss_dssp             CSEEEEEEEEE
T ss_pred             eeEEEEEEEEe
Confidence            99999998754

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.83  E-value=4.4e-11  Score=113.95  Aligned_cols=103  Identities=14%  Similarity=0.084  Sum_probs=62.3

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCCC---eeEEEEccccCCCc----hHHhc-ccEE----EEccCCCCCCCCCHH
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVS---SGTAKIYDHDIRTD----MTTIR-RSLG----VCPQYNALFDKLTVE  146 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~---~G~v~~~g~~~~~~----~~~~~-~~ig----~v~Q~~~~~~~~tv~  146 (601)
                      +|||||  ||||     ++ ++|+|+++|+   +|+|.++|.++...    ....| +.+|    +++|++.+|.    .
T Consensus         8 vG~SGs--GKST-----L~-~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i----~   75 (171)
T 2f1r_A            8 VGTSDS--GKTT-----LI-TRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI----R   75 (171)
T ss_dssp             EESCHH--HHHH-----HH-HHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE----E
T ss_pred             ECCCCC--CHHH-----HH-HHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE----e
Confidence            899999  4554     44 6899999998   99999999985431    22334 3456    8899877651    0


Q ss_pred             HHHHHhHhhcCCChHHHHHHHHHHHHH-cCCCcccCCccccCChHHHhhhhchhhhcchhh
Q psy7365         147 EHMWFYSQLKQVPKDLAQLEISNMIGD-LGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKA  206 (601)
Q Consensus       147 e~l~~~~~~~~~~~~~~~~~~~~~l~~-~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~  206 (601)
                      +         + + .+....+.++++. +.  ..-......|||||+||+++||+++.+|.
T Consensus        76 ~---------~-~-~~~~a~l~~~i~~~l~--g~dt~i~EglSgGq~qri~lARall~~p~  123 (171)
T 2f1r_A           76 R---------V-S-EEEGNDLDWIYERYLS--DYDLVITEGFSKAGKDRIVVVKKPEEVEH  123 (171)
T ss_dssp             E---------C-C-HHHHTCHHHHHHHHTT--TCSEEEEESCGGGCCCEEEECSSGGGGGG
T ss_pred             c---------C-C-hhhhhCHHHHHHhhCC--CCCEEEECCcCCCCCcEEEEEecccCCCc
Confidence            0         0 1 1111234555655 43  22222333599999999999999999875

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.83  E-value=2e-10  Score=125.94  Aligned_cols=78  Identities=13%  Similarity=0.077  Sum_probs=61.7

Q ss_pred             eecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc-------hHHhcccEEEEcc
Q psy7365          69 ISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD-------MTTIRRSLGVCPQ  135 (601)
Q Consensus        69 ~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~-------~~~~~~~ig~v~Q  135 (601)
                      -+++||++.+      +|||||  ||||     + .++|+|+++|++|+|.+.|.++...       .+..+++++|++|
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGS--GKTT-----L-l~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q  354 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGV--GKTT-----T-IGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQ  354 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTS--SHHH-----H-HHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECC
T ss_pred             CCCceeeccCCeEEEEECCCcc--cHHH-----H-HHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEec
Confidence            4678888765      999999  4554     4 4689999999999999998877542       1123567999999


Q ss_pred             CCCCCCCCCHHHHHHHhHh
Q psy7365         136 YNALFDKLTVEEHMWFYSQ  154 (601)
Q Consensus       136 ~~~~~~~~tv~e~l~~~~~  154 (601)
                      ++.+++.+++.+|+.++..
T Consensus       355 ~~~~~p~~tV~e~l~~a~~  373 (503)
T 2yhs_A          355 HTGADSASVIFDAIQAAKA  373 (503)
T ss_dssp             STTCCHHHHHHHHHHHHHH
T ss_pred             ccCcCHHHHHHHHHHHHHh
Confidence            9988889999999988643

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.82  E-value=5.4e-10  Score=129.10  Aligned_cols=76  Identities=21%  Similarity=0.162  Sum_probs=61.6

Q ss_pred             CChHHHHHHHHHHHH--hCCCCEEEEECC---CCCCCHHHH-HHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEe
Q psy7365         431 LSGGNKRKLSTAIAL--LGNTPLIFLDEP---TSGMDPGAR-RFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMV  504 (601)
Q Consensus       431 LSgGqkQRl~lA~AL--~~~P~lLlLDEP---TsGLD~~~~-~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~  504 (601)
                      +|+||++++.+++++  +.+|+++|||||   |++||+.+. ..+.+.|.+   .|.|+|++||+.+++. +|  .-.+.
T Consensus       636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~~-~~--~~~v~  709 (765)
T 1ewq_A          636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELTA-LG--LPRLK  709 (765)
T ss_dssp             CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHHT-CC--CTTEE
T ss_pred             ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHH-hh--hhcce
Confidence            689999999999999  999999999999   999999886 467777765   5899999999998865 55  33345


Q ss_pred             CCEEEEec
Q psy7365         505 NGQFTCLG  512 (601)
Q Consensus       505 ~G~iv~~G  512 (601)
                      ++++.+..
T Consensus       710 n~~~~~~~  717 (765)
T 1ewq_A          710 NLHVAARE  717 (765)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEE
Confidence            56665554

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.78  E-value=3e-09  Score=111.00  Aligned_cols=41  Identities=17%  Similarity=0.226  Sum_probs=35.9

Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchh
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMD  325 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~  325 (601)
                      |+++|+|||++ ||+.++..+++.+.+.      ..+.++|++||+.+
T Consensus       135 ~~vlilDE~~~-L~~~~~~~L~~~le~~------~~~~~~Il~t~~~~  175 (354)
T 1sxj_E          135 YKCVIINEANS-LTKDAQAALRRTMEKY------SKNIRLIMVCDSMS  175 (354)
T ss_dssp             CEEEEEECTTS-SCHHHHHHHHHHHHHS------TTTEEEEEEESCSC
T ss_pred             CeEEEEeCccc-cCHHHHHHHHHHHHhh------cCCCEEEEEeCCHH
Confidence            68999999999 9999999999999874      24789999999865

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.77  E-value=8.2e-11  Score=122.17  Aligned_cols=173  Identities=13%  Similarity=0.169  Sum_probs=89.3

Q ss_pred             cchhHHHHHHhhccccccccccCCeeeeecC-CCCCCccchhhhhcccccccccCCCccceee---cce----EEeec--
Q psy7365           9 VRYDVTQLIRSFLPAANIHKISGSEVTYVLP-QDPASMGAYVSLFESLSENRDKLGIDSYGIS---DTS----LEEQP--   78 (601)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~--   78 (601)
                      |.++.. .|..||-.+   +..|.++..++- .|-......-..++++.+.|...+.++..++   +.+    +++.+  
T Consensus        99 p~~~~~-~i~r~L~~~---~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~~~~G~  174 (307)
T 1t9h_A           99 PSFSTA-LLDRFLVLV---EANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDK  174 (307)
T ss_dssp             TTCCHH-HHHHHHHHH---HTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGGGTTS
T ss_pred             CCCCHH-HHHHHHHHH---HHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHhhcCCC
Confidence            555554 666666432   234555554433 3322221100114455566644444444333   222    33322  


Q ss_pred             ----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEE---ccccCCCchHHhcccEEEEccCCCCCC----CCCHHH
Q psy7365          79 ----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKI---YDHDIRTDMTTIRRSLGVCPQYNALFD----KLTVEE  147 (601)
Q Consensus        79 ----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~---~g~~~~~~~~~~~~~ig~v~Q~~~~~~----~~tv~e  147 (601)
                          +||||+  ||||     + .++|+|+.+|++|+|.+   +|+.++......+..+|+++|.|.++.    ++|+ |
T Consensus       175 ~~~lvG~sG~--GKST-----L-ln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e  245 (307)
T 1t9h_A          175 TTVFAGQSGV--GKSS-----L-LNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-E  245 (307)
T ss_dssp             EEEEEESHHH--HHHH-----H-HHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred             EEEEECCCCC--CHHH-----H-HHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-H
Confidence                999999  4555     4 56999999999999999   888775432222223799999997654    6899 8


Q ss_pred             HHH--HhH-h-h------cC-CChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhh
Q psy7365         148 HMW--FYS-Q-L------KQ-VPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRK  194 (601)
Q Consensus       148 ~l~--~~~-~-~------~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr  194 (601)
                      |+.  |.. . .      .+ ....+...++.++++.++|.+.+.+...+|+.||+||
T Consensus       246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~  303 (307)
T 1t9h_A          246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR  303 (307)
T ss_dssp             HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence            883  321 1 1      11 1222334568899999999987777777888889885

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.77  E-value=6.2e-10  Score=116.72  Aligned_cols=91  Identities=15%  Similarity=0.031  Sum_probs=70.0

Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEE-e
Q psy7365         433 GGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTC-L  511 (601)
Q Consensus       433 gGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~-~  511 (601)
                      |||+||++||+||..+|++++|||||+       .++++.|+.+...+.|++++||+++ +...|||+++|.+|+... .
T Consensus       225 gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~~~~~  296 (330)
T 2pt7_A          225 GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSNSAARN  296 (330)
T ss_dssp             TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTSGGGTT
T ss_pred             CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhcCCCEEEEEEcccH-HHHHhhhheehhcCCcccCC
Confidence            899999999999999999999999998       2467788877644458999999999 888999999998885432 2


Q ss_pred             cCHHHHHHHhCCceEEEEEe
Q psy7365         512 GSATHLKSKYGQGYSVKVRC  531 (601)
Q Consensus       512 G~~~~L~~~~~~~~~l~i~~  531 (601)
                      -+.+.+.+.......+.+.+
T Consensus       297 ~~~~~i~~~i~~~id~vv~~  316 (330)
T 2pt7_A          297 IKFESLIEGFKDLIDMIVHI  316 (330)
T ss_dssp             SCHHHHHHHHHTTCCEEEEE
T ss_pred             CCHHHHHHHHHHhCCEEEEE
Confidence            23445555554444444544

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.77  E-value=7.1e-09  Score=105.34  Aligned_cols=82  Identities=10%  Similarity=0.027  Sum_probs=65.9

Q ss_pred             HHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCC--CCCHHHH---HHHHHHHHHHH-hCCcEE
Q psy7365         410 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTS--GMDPGAR---RFLWTCIERAV-SEGRCV  483 (601)
Q Consensus       410 ~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTs--GLD~~~~---~~i~~lL~~l~-~~G~tV  483 (601)
                      ...++++.+.+.+..++++..||+||+|++   ++++.+|+++|+||||+  ++|+...   ..+++.|++++ +.|+||
T Consensus        98 ~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tv  174 (279)
T 1nlf_A           98 ERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSI  174 (279)
T ss_dssp             HHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred             hhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEE
Confidence            356678888888888889999999998865   58888999999999999  9998544   78888888886 459999


Q ss_pred             EEEccChhHHH
Q psy7365         484 ILTSHNMEECE  494 (601)
Q Consensus       484 llsTHdl~e~~  494 (601)
                      |++||+....+
T Consensus       175 i~i~H~~~~~~  185 (279)
T 1nlf_A          175 VFLHHASKGAA  185 (279)
T ss_dssp             EEEEEC-----
T ss_pred             EEEecCCCccc
Confidence            99999998765

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.76  E-value=2.8e-10  Score=122.91  Aligned_cols=181  Identities=11%  Similarity=0.073  Sum_probs=97.9

Q ss_pred             hcccccccccCCCccceeecceEEeec--------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          52 FESLSENRDKLGIDSYGISDTSLEEQP--------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +++ ++.|++    .+ ++|+||++.+        +||||+  |||||      .++|+|+.        ++|.++.. .
T Consensus        19 ~~~-~~~y~~----~~-L~~vsl~i~~Gei~~vaLvG~nGa--GKSTL------ln~L~G~~--------l~g~~~~~~~   76 (427)
T 2qag_B           19 LAG-HVGFDS----LP-DQLVNKSVSQGFCFNILCVGETGL--GKSTL------MDTLFNTK--------FEGEPATHTQ   76 (427)
T ss_dssp             CCC-CC-CC------C-HHHHHHSCC-CCEEEEEEECSTTS--SSHHH------HHHHHTSC--------C-------CC
T ss_pred             Eee-EEEECC----ee-cCCCceEecCCCeeEEEEECCCCC--CHHHH------HHHHhCcc--------ccCCcCCCCC
Confidence            455 666643    33 8899988755        799999  67765      67999984        33443321 1


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCCh--------HHHHHHHHHHHHHc-CCCcccCCccccCChHHHh
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK--------DLAQLEISNMIGDL-GIPHKRTSLANTLSGGMQR  193 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~--------~~~~~~~~~~l~~~-gl~~~~~~~~~~LSgG~~q  193 (601)
                      ....++.+||++|++.+++.+||.||+.|+..   .+.        +.+..+..++++.. ++.       .+|++....
T Consensus        77 ~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~---~~~~~~~~~i~~~i~~q~~~~L~e~~~i~-------r~l~~~~d~  146 (427)
T 2qag_B           77 PGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQ---INKEDSYKPIVEFIDAQFEAYLQEELKIR-------RVLHTYHDS  146 (427)
T ss_dssp             SSCEEEEEEEEEEC--CEEEEEEEEEECCCC----CCHHHHSHHHHHHHHHHHHHHHHHC--CC-------CCCCCSCC-
T ss_pred             ccceEeeEEEEeecCccccccchhhhhhhhhc---cccchhhhHHHHHHHHHHHHHHHHHHhhh-------hhhcccccc
Confidence            12234579999999999889999999877542   111        12233445555554 433       223333333


Q ss_pred             hhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhh
Q psy7365         194 KLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAM  273 (601)
Q Consensus       194 r~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  273 (601)
                      |+..+-.++.|.                                   .++  +..  ..              +.++-++
T Consensus       147 rVh~~v~fI~d~-----------------------------------~~~--l~~--~D--------------ieilk~L  173 (427)
T 2qag_B          147 RIHVCLYFIAPT-----------------------------------GHS--LKS--LD--------------LVTMKKL  173 (427)
T ss_dssp             -CCEEEEEECCC-----------------------------------C-----CH--HH--------------HHHHHHT
T ss_pred             cccEEEEEEeCC-----------------------------------CCC--CCH--HH--------------HHHHHHH
Confidence            432110011110                                   000  000  00              1122222


Q ss_pred             ccCCCcEEEEecCCCCCCHHHHHHHHHHHHH-HhhhccccCCcEEEEEecc
Q psy7365         274 SFVPASTVILDEPTSGVDPYSRRSIWELLIK-VYYASHSLSGRTVILTTHY  323 (601)
Q Consensus       274 ~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~-l~~~~~~~~G~TVI~~tHd  323 (601)
                      . ..++++++|||+..|.+.....+.+.+.+ +     ...|.+|+.+|.+
T Consensus       174 ~-~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L-----~~~gi~I~~is~~  218 (427)
T 2qag_B          174 D-SKVNIIPIIAKADAISKSELTKFKIKITSEL-----VSNGVQIYQFPTD  218 (427)
T ss_dssp             C-SCSEEEEEESCGGGSCHHHHHHHHHHHHHHH-----BTTBCCCCCCC--
T ss_pred             h-hCCCEEEEEcchhccchHHHHHHHHHHHHHH-----HHcCCcEEecCCC
Confidence            2 34679999999999999999888888886 5     3578999988764

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.71  E-value=6.1e-11  Score=128.19  Aligned_cols=115  Identities=17%  Similarity=0.137  Sum_probs=78.2

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch-----HHhcccEEEEc---------cCCCC--CCC
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM-----TTIRRSLGVCP---------QYNAL--FDK  142 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~-----~~~~~~ig~v~---------Q~~~~--~~~  142 (601)
                      +||||+  ||||     + .++|+|+++|++|+|.+.|.++....     ..+++.+|+.|         |+|.+  +..
T Consensus       173 ~GpnGS--GKTT-----l-L~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgE  244 (418)
T 1p9r_A          173 TGPTGS--GKST-----T-LYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGE  244 (418)
T ss_dssp             ECSTTS--CHHH-----H-HHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESC
T ss_pred             ECCCCC--CHHH-----H-HHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcC
Confidence            999999  4554     4 46899999999999999998874211     12344566766         99874  344


Q ss_pred             ----CCHHHHHHHhHhhc----CCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhh
Q psy7365         143 ----LTVEEHMWFYSQLK----QVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKA  206 (601)
Q Consensus       143 ----~tv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~  206 (601)
                          .|+.+++.+...-+    .+....... +.+.|..+|+....  .+.+|||||+||  +|++++.+|.
T Consensus       245 iRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~~~~LSgg~~QR--LaraL~~~p~  311 (418)
T 1p9r_A          245 IRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--ISSSLLGVLAQR--LVRTLCPDCK  311 (418)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--HHHHEEEEEEEE--EEEEECTTTC
T ss_pred             cCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--HHHHHHHHHHHH--hhhhhcCCCC
Confidence                58888887753211    011111112 23357788988653  789999999999  7888888764

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.69  E-value=3.1e-10  Score=119.83  Aligned_cols=81  Identities=20%  Similarity=0.316  Sum_probs=74.0

Q ss_pred             cccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCc-----EEEEEccChhHHHhhCC
Q psy7365         426 REVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVS--EGR-----CVILTSHNMEECEALCT  498 (601)
Q Consensus       426 ~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~--~G~-----tVllsTHdl~e~~~l~d  498 (601)
                      ..+..||+|| ||+++|   +++|++      |+|+||..+..++++++++.+  +|.     ||+++|||++  +.+||
T Consensus       167 d~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d  234 (347)
T 2obl_A          167 DSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGD  234 (347)
T ss_dssp             ETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHH
T ss_pred             hhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--Chhhh
Confidence            4688999999 899999   688888      999999999999999999864  487     9999999999  78999


Q ss_pred             EEEEEeCCEEEEecCHHHHH
Q psy7365         499 KLTIMVNGQFTCLGSATHLK  518 (601)
Q Consensus       499 rv~iL~~G~iv~~G~~~~L~  518 (601)
                      ++++|.+|+++.+++++++.
T Consensus       235 ~v~~i~dG~Ivl~~~l~~~~  254 (347)
T 2obl_A          235 EVRSILDGHIVLTRELAEEN  254 (347)
T ss_dssp             HHHHHCSEEEEBCHHHHTTT
T ss_pred             heEEeeCcEEEEeCCHHHcC
Confidence            99999999999999998875

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.68  E-value=1.1e-11  Score=118.23  Aligned_cols=107  Identities=9%  Similarity=-0.026  Sum_probs=62.6

Q ss_pred             cccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcC
Q psy7365          78 PLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ  157 (601)
Q Consensus        78 ~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~  157 (601)
                      -+|||||  ||||     ++ ++|+|.  |+.|.|.++|.++.... ..+..++|++|++.  +..+|.+|+.+......
T Consensus        14 l~G~~Gs--GKST-----l~-~~La~~--~~~g~i~i~~d~~~~~~-~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~   80 (191)
T 1zp6_A           14 LSGHPGS--GKST-----IA-EALANL--PGVPKVHFHSDDLWGYI-KHGRIDPWLPQSHQ--QNRMIMQIAADVAGRYA   80 (191)
T ss_dssp             EEECTTS--CHHH-----HH-HHHHTC--SSSCEEEECTTHHHHTC-CSSCCCTTSSSHHH--HHHHHHHHHHHHHHHHH
T ss_pred             EECCCCC--CHHH-----HH-HHHHhc--cCCCeEEEcccchhhhh-hcccccCCccchhh--hhHHHHHHHHHHHHHHh
Confidence            3899999  4555     44 589998  78899999998752111 11234678888654  46789999877543220


Q ss_pred             CChHHHHHHHHHHHHHcCCCccc--CCccccCChHHHhhhhchh
Q psy7365         158 VPKDLAQLEISNMIGDLGIPHKR--TSLANTLSGGMQRKLDNVK  199 (601)
Q Consensus       158 ~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~LSgG~~qr~~~~~  199 (601)
                      ...  ....++.++..+++....  +..+..+|+|++|++.++|
T Consensus        81 ~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R  122 (191)
T 1zp6_A           81 KEG--YFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIER  122 (191)
T ss_dssp             HTS--CEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHH
T ss_pred             ccC--CeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHH
Confidence            000  000011111122232222  4557789999999987543

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.68  E-value=8.3e-09  Score=99.85  Aligned_cols=59  Identities=12%  Similarity=0.023  Sum_probs=43.9

Q ss_pred             CcEEEEecCCCCCCHHHH-----HH---HHHHHHHHhhhccccCCcEEEEEecchh-------------HHHhcCCEEEE
Q psy7365         278 ASTVILDEPTSGVDPYSR-----RS---IWELLIKVYYASHSLSGRTVILTTHYMD-------------EADLLGDRIAI  336 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~-----~~---l~~~l~~l~~~~~~~~G~TVI~~tHdl~-------------~~~~l~Drv~v  336 (601)
                      |+++|+||||+.+|+...     ..   +.+.|+++.    +..|.|+|+++|...             .+...||++++
T Consensus       106 ~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~----~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~  181 (220)
T 2cvh_A          106 FALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIA----RKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILR  181 (220)
T ss_dssp             EEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHH----HHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEE
T ss_pred             CCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHH----HHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEE
Confidence            689999999999997432     33   344455542    234899999999876             56789999999


Q ss_pred             ecCC
Q psy7365         337 IAAG  340 (601)
Q Consensus       337 L~~G  340 (601)
                      |...
T Consensus       182 l~~~  185 (220)
T 2cvh_A          182 LDKL  185 (220)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            9754

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.65  E-value=3.4e-11  Score=116.77  Aligned_cols=116  Identities=13%  Similarity=0.118  Sum_probs=93.1

Q ss_pred             ccccCCCCcccC--CCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHH----HHHHHHHHHh
Q psy7365         373 YIGYCPQFDALN--DRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNK----RKLSTAIALL  446 (601)
Q Consensus       373 ~ig~v~Q~~~l~--~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqk----QRl~lA~AL~  446 (601)
                      .++|++|++.++  ..+|+.++..+..   +.+.....+.+.+.++.+++.+..++++.++|+|++    ||+++|++++
T Consensus        33 ~i~~v~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li  109 (211)
T 3asz_A           33 RVALLPMDHYYKDLGHLPLEERLRVNY---DHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVI  109 (211)
T ss_dssp             GEEEEEGGGCBCCCTTSCHHHHHHSCT---TSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEE
T ss_pred             CeEEEecCccccCcccccHHHhcCCCC---CChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEE
Confidence            578999988765  5678888865532   222222345677888888888888889999999974    6889999999


Q ss_pred             CCCCEEEEECCCCC-------CCHHHHHHHHHHHHHH-HhCCcEEEEEccChh
Q psy7365         447 GNTPLIFLDEPTSG-------MDPGARRFLWTCIERA-VSEGRCVILTSHNME  491 (601)
Q Consensus       447 ~~P~lLlLDEPTsG-------LD~~~~~~i~~lL~~l-~~~G~tVllsTHdl~  491 (601)
                      .+|+++++||||++       ||+.....+++.+++. .++|.|++.++|++.
T Consensus       110 ~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~  162 (211)
T 3asz_A          110 LEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYL  162 (211)
T ss_dssp             EESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             EeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            99999999999999       9999999999998875 456999999999853

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.62  E-value=1.3e-08  Score=118.13  Aligned_cols=93  Identities=16%  Similarity=0.191  Sum_probs=68.1

Q ss_pred             CCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHhC-CcEEEEEccChhHHHhh
Q psy7365         419 ALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFL-WTCIERAVSE-GRCVILTSHNMEECEAL  496 (601)
Q Consensus       419 ~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i-~~lL~~l~~~-G~tVllsTHdl~e~~~l  496 (601)
                      +..+......+++|++|++ +..+...+.+|+++||||||+|+|+.....+ +.+++.+.++ |.++|++||+.+.+ .+
T Consensus       658 ~~~d~l~~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l  735 (800)
T 1wb9_A          658 GAADDLASGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QL  735 (800)
T ss_dssp             C-----------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GH
T ss_pred             CHHHHHHhhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HH
Confidence            3333334445677888765 4555567999999999999999999887775 8899998874 99999999999776 48


Q ss_pred             CCEEEEEeCCEEEEecC
Q psy7365         497 CTKLTIMVNGQFTCLGS  513 (601)
Q Consensus       497 ~drv~iL~~G~iv~~G~  513 (601)
                      ||++..+.+|++.+...
T Consensus       736 ~d~~~~v~n~~~~~~~~  752 (800)
T 1wb9_A          736 PEKMEGVANVHLDALEH  752 (800)
T ss_dssp             HHHSTTEEEEEEEEEEE
T ss_pred             hhhhhceEEEEEEEEEc
Confidence            99988889998877643

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.62  E-value=2.2e-09  Score=110.50  Aligned_cols=98  Identities=11%  Similarity=0.005  Sum_probs=60.9

Q ss_pred             eecccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhH--
Q psy7365          76 EQPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYS--  153 (601)
Q Consensus        76 ~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~--  153 (601)
                      +.-.|||||  ||||     ++ ++|.+++++. |      ..        ++.+.+|+|++.+|+ .+..+|+.+..  
T Consensus        34 i~I~G~sGs--GKST-----la-~~L~~~l~~~-g------~~--------~~~~~iv~~D~f~~~-~~~~~~l~~~~~~   89 (290)
T 1odf_A           34 IFFSGPQGS--GKSF-----TS-IQIYNHLMEK-Y------GG--------EKSIGYASIDDFYLT-HEDQLKLNEQFKN   89 (290)
T ss_dssp             EEEECCTTS--SHHH-----HH-HHHHHHHHHH-H------GG--------GSCEEEEEGGGGBCC-HHHHHHHHHHTTT
T ss_pred             EEEECCCCC--CHHH-----HH-HHHHHHhhhc-C------CC--------CceEEEeccccccCC-hHHHHHHhccccc
Confidence            344899999  4554     45 5788888763 2      10        334566699987775 48889988752  


Q ss_pred             ----hhcCCChHHHHHHHHHHHHHcCCC--------cccCCccccCChHHHhhhhc
Q psy7365         154 ----QLKQVPKDLAQLEISNMIGDLGIP--------HKRTSLANTLSGGMQRKLDN  197 (601)
Q Consensus       154 ----~~~~~~~~~~~~~~~~~l~~~gl~--------~~~~~~~~~LSgG~~qr~~~  197 (601)
                          ...|.+.........+.++.+.-.        .....+...+||||+||+++
T Consensus        90 ~~l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~  145 (290)
T 1odf_A           90 NKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPT  145 (290)
T ss_dssp             CGGGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSS
T ss_pred             cchhhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCcccccccc
Confidence                223344322233455666666432        12345678999999999864

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.59  E-value=7.7e-08  Score=92.96  Aligned_cols=79  Identities=11%  Similarity=0.024  Sum_probs=62.1

Q ss_pred             cCcCChHH--HHHHHHHHHHhCC-CCEEEEECCCCCCCHHH--------HHHHHHHHHHHHhC-CcEEEEEccChh----
Q psy7365         428 VRTLSGGN--KRKLSTAIALLGN-TPLIFLDEPTSGMDPGA--------RRFLWTCIERAVSE-GRCVILTSHNME----  491 (601)
Q Consensus       428 ~~~LSgGq--kQRl~lA~AL~~~-P~lLlLDEPTsGLD~~~--------~~~i~~lL~~l~~~-G~tVllsTHdl~----  491 (601)
                      +..+|+++  +|++..+++++.+ |+++++||||+++|+..        ..++++.|++++++ |.|||+++|...    
T Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~  161 (220)
T 2cvh_A           82 LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRT  161 (220)
T ss_dssp             EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTT
T ss_pred             EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCC
Confidence            34556665  4678888899986 99999999999999743        24455557777654 899999999876    


Q ss_pred             ---------HHHhhCCEEEEEeCC
Q psy7365         492 ---------ECEALCTKLTIMVNG  506 (601)
Q Consensus       492 ---------e~~~l~drv~iL~~G  506 (601)
                               .++.+||++++|++.
T Consensus       162 ~~~~p~~~~~~~~~~d~vi~l~~~  185 (220)
T 2cvh_A          162 EMTKPVAEQTLGYRCKDILRLDKL  185 (220)
T ss_dssp             SSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred             CccccCCCcceeecCcEEEEEEEe
Confidence                     678899999999865

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.58  E-value=4.4e-09  Score=111.96  Aligned_cols=58  Identities=10%  Similarity=0.126  Sum_probs=40.6

Q ss_pred             CChHHHHHHHHHHHHhCCCCE--EEEECCCCCCCHHH---H-----HHHHHHHHHHHhCCcEEEEEccCh
Q psy7365         431 LSGGNKRKLSTAIALLGNTPL--IFLDEPTSGMDPGA---R-----RFLWTCIERAVSEGRCVILTSHNM  490 (601)
Q Consensus       431 LSgGqkQRl~lA~AL~~~P~l--LlLDEPTsGLD~~~---~-----~~i~~lL~~l~~~G~tVllsTHdl  490 (601)
                      +|+|  ||++++.++..+|++  +|+||.|+.+|...   .     +.+.+...++..+|.|.+.+.|.+
T Consensus       284 ~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~  351 (372)
T 2ewv_A          284 KIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEA  351 (372)
T ss_dssp             CSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSS
T ss_pred             cCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHH
Confidence            3678  889999999999999  99999999988641   1     223333334445687765555543

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.56  E-value=7.2e-10  Score=115.96  Aligned_cols=107  Identities=22%  Similarity=0.288  Sum_probs=68.3

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCC----CCCeeEEEEccccCCCchHHh-cccEEEEccCCCCCCCCCHHHHHHHhH
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGML----PVSSGTAKIYDHDIRTDMTTI-RRSLGVCPQYNALFDKLTVEEHMWFYS  153 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~----~~~~G~v~~~g~~~~~~~~~~-~~~ig~v~Q~~~~~~~~tv~e~l~~~~  153 (601)
                      .||||+  |||||      .++|+|.+    ++++|.+..++.++....... +..|++++|.+.+++  ++.|++....
T Consensus        57 ~Gp~G~--GKTTL------a~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~  126 (334)
T 1in4_A           57 AGPPGL--GKTTL------AHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK--AVEELLYSAI  126 (334)
T ss_dssp             ESSTTS--SHHHH------HHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHH
T ss_pred             ECCCCC--cHHHH------HHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH--HHHHHHHHHH
Confidence            899999  56654      46889887    778888877766543211122 457999999887765  7888886555


Q ss_pred             hhcCCC----hHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhh
Q psy7365         154 QLKQVP----KDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD  196 (601)
Q Consensus       154 ~~~~~~----~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~  196 (601)
                      +.++.+    .....+.+...+..+++.. .++.+..||+|++||++
T Consensus       127 ~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~  172 (334)
T 1in4_A          127 EDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFG  172 (334)
T ss_dssp             HTSCCCC---------------CCCEEEE-EESCGGGSCHHHHTTCS
T ss_pred             HhcccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcC
Confidence            544432    2222344556677777765 67788999999999975

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.52  E-value=6.3e-08  Score=94.16  Aligned_cols=61  Identities=16%  Similarity=0.111  Sum_probs=46.1

Q ss_pred             CCCCEEEEECCCCCCCHH-------H-----HHHHHHHHHHHHh-CCcEEEEEccChhH----HHhhCCEEEEEeCCE
Q psy7365         447 GNTPLIFLDEPTSGMDPG-------A-----RRFLWTCIERAVS-EGRCVILTSHNMEE----CEALCTKLTIMVNGQ  507 (601)
Q Consensus       447 ~~P~lLlLDEPTsGLD~~-------~-----~~~i~~lL~~l~~-~G~tVllsTHdl~e----~~~l~drv~iL~~G~  507 (601)
                      .+|+++++||||+++|+.       .     ..++++.|.++++ .|+|||++||++++    ++.+||++++|++|+
T Consensus       124 ~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~  201 (231)
T 4a74_A          124 RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK  201 (231)
T ss_dssp             SCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred             CceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence            499999999999999984       2     2367777777754 49999999996666    999999999998753

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.50  E-value=2.4e-08  Score=107.34  Aligned_cols=61  Identities=13%  Similarity=0.077  Sum_probs=41.5

Q ss_pred             CCcEEEEecCCCCCCHHHH------------HHHHHHHHHHhhhccccCCcEEEEEecch-------------------h
Q psy7365         277 PASTVILDEPTSGVDPYSR------------RSIWELLIKVYYASHSLSGRTVILTTHYM-------------------D  325 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~------------~~l~~~l~~l~~~~~~~~G~TVI~~tHdl-------------------~  325 (601)
                      .|+++|+|||++.+|+...            ..+.+.|+++.    +..|.|||+++|..                   .
T Consensus       273 ~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~la----ke~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~  348 (400)
T 3lda_A          273 RFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLA----DQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGN  348 (400)
T ss_dssp             CEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHH----HHHCCEEEEEEEC--------------------C
T ss_pred             CCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHH----HHcCCEEEEEEeecccCCccccccCCCccCCchh
Confidence            4689999999999986432            44555666653    23589999999983                   2


Q ss_pred             HHHhcCCEEEEecCCc
Q psy7365         326 EADLLGDRIAIIAAGK  341 (601)
Q Consensus       326 ~~~~l~Drv~vL~~Gk  341 (601)
                      .+...+|.+++|..++
T Consensus       349 ~l~~~ad~vl~L~~~~  364 (400)
T 3lda_A          349 IMAYSSTTRLGFKKGK  364 (400)
T ss_dssp             HHHHHCSEEEEEEECS
T ss_pred             HHHHhcceEEEEEecC
Confidence            2466778888887653

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.41  E-value=5.9e-08  Score=91.62  Aligned_cols=44  Identities=23%  Similarity=0.350  Sum_probs=37.5

Q ss_pred             CcEEEEecCCC-CCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhH
Q psy7365         278 ASTVILDEPTS-GVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDE  326 (601)
Q Consensus       278 ~~~liLDEPts-gLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~  326 (601)
                      |++||||||++ ++|+..+..+++++.+.+     .+|+++|++||....
T Consensus       101 ~~llilDE~~~~~~~~~~~~~l~~ll~~~~-----~~~~~ii~tsn~~~~  145 (180)
T 3ec2_A          101 SPVLVLDDLGSERLSDWQRELISYIITYRY-----NNLKSTIITTNYSLQ  145 (180)
T ss_dssp             CSEEEEETCSSSCCCHHHHHHHHHHHHHHH-----HTTCEEEEECCCCSC
T ss_pred             CCEEEEeCCCCCcCCHHHHHHHHHHHHHHH-----HcCCCEEEEcCCChh
Confidence            58999999985 999999999999998763     358999999998654

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.39  E-value=3.8e-10  Score=115.13  Aligned_cols=119  Identities=13%  Similarity=0.044  Sum_probs=82.5

Q ss_pred             eeecceEEeec----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc-hHHhcccEEEEccCC-CCCC
Q psy7365          68 GISDTSLEEQP----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD-MTTIRRSLGVCPQYN-ALFD  141 (601)
Q Consensus        68 ~~~~~~~~~~~----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~-~~~~~~~ig~v~Q~~-~~~~  141 (601)
                      +++++++++..    .|||||  |||||      .++|+|.+.+  |.|.++|.++... .....+.++++||.+ ..++
T Consensus        35 ~l~~~~l~~~~GvlL~Gp~Gt--GKTtL------akala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p  104 (274)
T 2x8a_A           35 QFKALGLVTPAGVLLAGPPGC--GKTLL------AKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAP  104 (274)
T ss_dssp             HHHHTTCCCCSEEEEESSTTS--CHHHH------HHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHcCCCCCCeEEEECCCCC--cHHHH------HHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCC
Confidence            67777777655    999999  56654      4699999877  7999999887542 233455688999986 4667


Q ss_pred             CCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHH
Q psy7365         142 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWI  208 (601)
Q Consensus       142 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~  208 (601)
                      .+++.||+.+.....+.      ...    +  .+....++.+.+|||||+||+.+++++.|+|..+
T Consensus       105 ~i~~~Deid~~~~~r~~------~~~----~--~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L  159 (274)
T 2x8a_A          105 CVIFFDEVDALCPRRSD------RET----G--ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII  159 (274)
T ss_dssp             EEEEEETCTTTCC---------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS
T ss_pred             CeEeeehhhhhhcccCC------Ccc----h--HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC
Confidence            77777777543221110      000    0  1334456778899999999999999999998653

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.36  E-value=3.5e-08  Score=102.22  Aligned_cols=141  Identities=11%  Similarity=0.045  Sum_probs=86.8

Q ss_pred             CCEEEEecCCccccccCcccc-------ccccccccccccccCCcc---------cccccccCCCCcccCCCCCHHHHHH
Q psy7365         331 GDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSAP---------QKSYIGYCPQFDALNDRLTPREHLE  394 (601)
Q Consensus       331 ~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~~---------~~~~ig~v~Q~~~l~~~lTv~E~L~  394 (601)
                      +..+++++.+.   +|+++.+       ++..++..+.+.|.....         .+..++|++|++.+++.+++++++.
T Consensus       102 g~vi~lvG~nG---sGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~  178 (304)
T 1rj9_A          102 GRVVLVVGVNG---VGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ  178 (304)
T ss_dssp             SSEEEEECSTT---SSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred             CeEEEEECCCC---CcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence            56677776432   5555433       223344444454443211         1356999999998888889999987


Q ss_pred             HhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q psy7365         395 FYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE  474 (601)
Q Consensus       395 ~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~  474 (601)
                      +... .+..        ..+++..|+.+..++.+.+||   +||++||||++.+|+.++|     .||+.+...+++.++
T Consensus       179 ~~~~-~~~d--------~~llDt~G~~~~~~~~~~eLs---~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~  241 (304)
T 1rj9_A          179 AMKA-RGYD--------LLFVDTAGRLHTKHNLMEELK---KVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAK  241 (304)
T ss_dssp             HHHH-HTCS--------EEEECCCCCCTTCHHHHHHHH---HHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHH
T ss_pred             HHHh-CCCC--------EEEecCCCCCCchHHHHHHHH---HHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHH
Confidence            6421 1111        013344455444444455555   8999999999999994443     344444455666677


Q ss_pred             HHHhC-CcEEEEEccChh
Q psy7365         475 RAVSE-GRCVILTSHNME  491 (601)
Q Consensus       475 ~l~~~-G~tVllsTHdl~  491 (601)
                      ++.+. |.|+|++||+.+
T Consensus       242 ~~~~~~~~t~iivTh~d~  259 (304)
T 1rj9_A          242 KFHEAVGLTGVIVTKLDG  259 (304)
T ss_dssp             HHHHHHCCSEEEEECTTS
T ss_pred             HHHHHcCCcEEEEECCcc
Confidence            76654 899999999854

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.35  E-value=5.5e-11  Score=113.48  Aligned_cols=134  Identities=16%  Similarity=0.090  Sum_probs=86.7

Q ss_pred             ccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcC--ChHHHHHHHHHH------H
Q psy7365         373 YIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTL--SGGNKRKLSTAI------A  444 (601)
Q Consensus       373 ~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~L--SgGqkQRl~lA~------A  444 (601)
                      ..|+++|....++..++++++.+....+....      ...+++.+. .....+...++  |+||+|++.++.      +
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~  114 (189)
T 2bdt_A           42 VGGYRPPWESDELLALTWKNITDLTVNFLLAQ------NDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREE  114 (189)
T ss_dssp             CTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT------CEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHH
T ss_pred             ccccccCccchhHHHHHHHHHHHHHHHHHhcC------CcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHH
Confidence            46788886655555678888776543221000      000111111 11111223345  899999988888      8


Q ss_pred             HhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccC-hhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         445 LLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN-MEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       445 L~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHd-l~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      +..+|+...+|+   |+|+..++. ++.+..+.+.+.++|.+||. +++++++||+|+  ++|++++.|+++-+..
T Consensus       115 l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~~  184 (189)
T 2bdt_A          115 LLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLEH  184 (189)
T ss_dssp             HHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC--------
T ss_pred             HHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchhh
Confidence            999998888884   899999888 99998886668899999999 999999999999  9999999999987643

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.32  E-value=1.1e-08  Score=115.56  Aligned_cols=122  Identities=10%  Similarity=0.139  Sum_probs=83.8

Q ss_pred             ccccccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCC
Q psy7365         369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGN  448 (601)
Q Consensus       369 ~~~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~  448 (601)
                      ..++.+||+||++.+++.+||++++.+.....+...             -++..              +++.++.+..+.
T Consensus        94 ~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~-------------~~~s~--------------~~i~l~i~~~~~  146 (608)
T 3szr_A           94 KWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG-------------MGISH--------------ELITLEISSRDV  146 (608)
T ss_dssp             CCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS-------------SCCCS--------------CCEEEEEEESSS
T ss_pred             cceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc-------------cccch--------------HHHHHHhcCCCC
Confidence            346789999999999999999999977543221100             01110              112222333458


Q ss_pred             CCEEEEECC------CCCCCHHHHHHHHHHHHHHHhC--CcEEEEEccChhHH--------Hhh----CCEEEEEeCCEE
Q psy7365         449 TPLIFLDEP------TSGMDPGARRFLWTCIERAVSE--GRCVILTSHNMEEC--------EAL----CTKLTIMVNGQF  508 (601)
Q Consensus       449 P~lLlLDEP------TsGLD~~~~~~i~~lL~~l~~~--G~tVllsTHdl~e~--------~~l----~drv~iL~~G~i  508 (601)
                      |+++++|||      |+|||+..+..++++++++..+  +.+++++||+++.+        ..+    +..|+++.++.+
T Consensus       147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl  226 (608)
T 3szr_A          147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL  226 (608)
T ss_dssp             CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred             CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence            999999999      9999999999999999997543  77899999998633        222    467899999988


Q ss_pred             EEecCHHHH
Q psy7365         509 TCLGSATHL  517 (601)
Q Consensus       509 v~~G~~~~L  517 (601)
                      +..|+.+++
T Consensus       227 v~~g~~~~~  235 (608)
T 3szr_A          227 VDKGTEDKV  235 (608)
T ss_dssp             SSSSSTTCC
T ss_pred             cCcccHHHH
Confidence            888876543

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.29  E-value=2.3e-09  Score=114.78  Aligned_cols=62  Identities=15%  Similarity=0.019  Sum_probs=52.1

Q ss_pred             cEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEE-EecCC-cccccc
Q psy7365         279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIA-IIAAG-KLQCCG  346 (601)
Q Consensus       279 ~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~-vL~~G-kIv~~G  346 (601)
                      ++.++|||+.++|+..++..++.+.++.    ...|.|++  +|.+.....+|+++. +|.+| +++..+
T Consensus       143 di~ildeel~~~D~~~~~k~~~~l~~~~----~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~  206 (392)
T 1ni3_A          143 DLSIIVDELLIKDAEFVEKHLEGLRKIT----SRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKG  206 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTT----CCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGS
T ss_pred             hhhhchhhhHHHHHHHHHHHHHHHHHHH----HhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecC
Confidence            7888999999999999999999888751    23577754  999999999999999 89999 776554

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.29  E-value=4.3e-07  Score=84.04  Aligned_cols=40  Identities=15%  Similarity=0.331  Sum_probs=31.9

Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcE-EEEEecc
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRT-VILTTHY  323 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~T-VI~~tHd  323 (601)
                      |++|++|||++ +++..++.+++++.+++     .+|++ +|++||.
T Consensus        84 ~~lLilDE~~~-~~~~~~~~l~~li~~~~-----~~g~~~iiits~~  124 (149)
T 2kjq_A           84 AEYLAVDQVEK-LGNEEQALLFSIFNRFR-----NSGKGFLLLGSEY  124 (149)
T ss_dssp             CSEEEEESTTC-CCSHHHHHHHHHHHHHH-----HHTCCEEEEEESS
T ss_pred             CCEEEEeCccc-cChHHHHHHHHHHHHHH-----HcCCcEEEEECCC
Confidence            48999999998 66666888999998874     34677 8888885

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.24  E-value=6e-09  Score=107.70  Aligned_cols=105  Identities=12%  Similarity=0.099  Sum_probs=66.9

Q ss_pred             ccccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCC
Q psy7365         371 KSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP  450 (601)
Q Consensus       371 ~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~  450 (601)
                      .+.+++++|.+.++..+|++|+..+......  .+..+.....+      .+..++++.++|||||||+.+|+|++    
T Consensus        62 ~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~--~e~~~~l~~~l------~~~~~~~~~~~sgg~rqrv~~ara~~----  129 (301)
T 2qnr_A           62 IEASTVEIEERGVKLRLTVVDTPGYGDAINC--RDCFKTIISYI------DEQFERYLHDESGLNRRHIIDNRVHC----  129 (301)
T ss_dssp             ---CEEEEC---CCEEEEEEEEC-------------CTTHHHHH------HHHHHHHHHHHTSSCCTTCCCCCCCE----
T ss_pred             EeeEEEEecCCCcccCcchhhhhhhhhhcCc--HHHHHHHHHHH------HHHHHHHHHHhCHHhhhhhhhhhhhh----
Confidence            3457899998888788899988766432210  00001111111      23346788999999999998888875    


Q ss_pred             EEEEECCCC-CCCHHHHHHHHHHHHHHHhC-CcEEEEEccChh
Q psy7365         451 LIFLDEPTS-GMDPGARRFLWTCIERAVSE-GRCVILTSHNME  491 (601)
Q Consensus       451 lLlLDEPTs-GLD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~  491 (601)
                      ++++||||+ |||+...    ++++++.++ +.++++++||+.
T Consensus       130 ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          130 CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL  168 (301)
T ss_dssp             EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred             eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence            999999998 5999873    566666544 789999999985

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.23  E-value=1.6e-07  Score=101.41  Aligned_cols=107  Identities=17%  Similarity=0.100  Sum_probs=56.7

Q ss_pred             eecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCC
Q psy7365          69 ISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDK  142 (601)
Q Consensus        69 ~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~  142 (601)
                      .++++|++..      +||||+  |||||      +++|+|..+      .+.+.+.++    +...+|+++++..  ..
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gA--GKSTL------L~~Lsg~~~------~i~~~~ftT----l~p~~G~V~~~~~--~~  206 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNA--GKSSL------LAAMTRAHP------KIAPYPFTT----LSPNLGVVEVSEE--ER  206 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGG--CHHHH------HHHHCSSCC------EECCCTTCS----SCCEEEEEECSSS--CE
T ss_pred             EeeeeeEEcCCCEEEEECCCCC--cHHHH------HHHHHcCCc------cccCcccce----ecceeeEEEecCc--ce
Confidence            5789999876      999999  56654      568899854      334444322    1234566655430  00


Q ss_pred             CCHHHHHHH---hHhhcCCChHHHH--HHHHHHHHHcCCCcccCCccccCChHHHhhhhch
Q psy7365         143 LTVEEHMWF---YSQLKQVPKDLAQ--LEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNV  198 (601)
Q Consensus       143 ~tv~e~l~~---~~~~~~~~~~~~~--~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~  198 (601)
                      +++.+..-+   ..+..++.....+  ++++.++..++++   ++++.+||+||+|++.++
T Consensus       207 ~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la  264 (416)
T 1udx_A          207 FTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYD  264 (416)
T ss_dssp             EEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHC
T ss_pred             EEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHh
Confidence            011110000   0111122221111  1233445555665   677899999999998643

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=98.20  E-value=1.7e-07  Score=103.54  Aligned_cols=176  Identities=14%  Similarity=0.090  Sum_probs=98.0

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCC-CCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCCC--CHHHHHHHhHhh
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGM-LPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKL--TVEEHMWFYSQL  155 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl-~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~--tv~e~l~~~~~~  155 (601)
                      .|++|+       ||||+++.++.++ ..++.|++.+.+.|.....          ++....+|++  +|.++.......
T Consensus       173 aG~TGS-------GKSt~L~~li~sLl~~~~p~~v~l~liDpK~~e----------l~~~~~lPhl~~~Vvtd~~~a~~~  235 (512)
T 2ius_A          173 AGTTGS-------GASVGVNAMILSMLYKAQPEDVRFIMIDPKMLE----------LSVYEGIPHLLTEVVTDMKDAANA  235 (512)
T ss_dssp             ECCTTS-------SHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSG----------GGGGTTCTTBSSSCBCSHHHHHHH
T ss_pred             ECCCCC-------CHHHHHHHHHHHHHHhCCCceEEEEEECCchhh----------hhhhccCCcccceeecCHHHHHHH
Confidence            899999       5555666666555 4556788888887764311          2221112222  222333333333


Q ss_pred             cCCChHHHHHHHHHHHHHcCCCcccC---CccccCChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCc
Q psy7365         156 KQVPKDLAQLEISNMIGDLGIPHKRT---SLANTLSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSR  232 (601)
Q Consensus       156 ~~~~~~~~~~~~~~~l~~~gl~~~~~---~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~  232 (601)
                      .+....++++|. +++...|+.+..+   +....+|+||+|+...   |-  |    ....     ..++++        
T Consensus       236 L~~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~---~~--p----g~~~-----~~~a~~--------  292 (512)
T 2ius_A          236 LRWCVNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPY---WK--P----GDSM-----DAQHPV--------  292 (512)
T ss_dssp             HHHHHHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTT---C--------------------CCB--------
T ss_pred             HHHHHHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccc---cc--c----ccch-----hccccc--------
Confidence            333346677764 7889999876532   2335789999987421   10  0    0000     000000        


Q ss_pred             chhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc-EEEEecCCCCCCHHHHHHHHHHHHHHhhhccc
Q psy7365         233 DDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS-TVILDEPTSGVDPYSRRSIWELLIKVYYASHS  311 (601)
Q Consensus       233 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~  311 (601)
                            +                                   ...|. ++++||+++-++.. ...+.+.+.++.+.. .
T Consensus       293 ------l-----------------------------------~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~g-R  329 (512)
T 2ius_A          293 ------L-----------------------------------KKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKA-R  329 (512)
T ss_dssp             ------C-----------------------------------CCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHC-G
T ss_pred             ------c-----------------------------------ccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHh-h
Confidence                  0                                   01256 78899999888743 344555555553322 2


Q ss_pred             cCCcEEEEEecchh-------HHHhcCCEEEEe
Q psy7365         312 LSGRTVILTTHYMD-------EADLLGDRIAII  337 (601)
Q Consensus       312 ~~G~TVI~~tHdl~-------~~~~l~Drv~vL  337 (601)
                      ..|.++|++||+.+       ....++.|+++-
T Consensus       330 a~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lr  362 (512)
T 2ius_A          330 AAGIHLVLATQRPSVDVITGLIKANIPTRIAFT  362 (512)
T ss_dssp             GGTEEEEEEESCCCTTTSCHHHHHHCCEEEEEC
T ss_pred             hCCcEEEEEecCCccccccHHHHhhcCCeEEEE
Confidence            34999999999987       455677777664

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.19  E-value=5.7e-07  Score=94.81  Aligned_cols=80  Identities=15%  Similarity=0.075  Sum_probs=48.8

Q ss_pred             ChHHHHHHHHHHHHh-------CCCCEEEEECCCCCCCHHH------------HHHHHHHHHHHHh-CCcEEEEEccChh
Q psy7365         432 SGGNKRKLSTAIALL-------GNTPLIFLDEPTSGMDPGA------------RRFLWTCIERAVS-EGRCVILTSHNME  491 (601)
Q Consensus       432 SgGqkQRl~lA~AL~-------~~P~lLlLDEPTsGLD~~~------------~~~i~~lL~~l~~-~G~tVllsTHdl~  491 (601)
                      |.+++|++.++++++       .+|+++|+||||+++|+..            .++++..|+++++ .|+|||+++|...
T Consensus       208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~  287 (349)
T 1pzn_A          208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA  287 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred             hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence            345666666666666       7999999999999999862            3556666666654 4999999999988


Q ss_pred             HHHhhCCEEEEEeCCEEEEe
Q psy7365         492 ECEALCTKLTIMVNGQFTCL  511 (601)
Q Consensus       492 e~~~l~drv~iL~~G~iv~~  511 (601)
                      .....++.......|+++..
T Consensus       288 ~~~~~~~~~~~~~~G~~l~~  307 (349)
T 1pzn_A          288 RPDAFFGDPTRPIGGHILAH  307 (349)
T ss_dssp             --------------CCCCCT
T ss_pred             ccccccCCccccCCcceEee
Confidence            77655555555566665544

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.18  E-value=9.8e-08  Score=94.21  Aligned_cols=98  Identities=14%  Similarity=0.149  Sum_probs=70.6

Q ss_pred             ccccccCCCCcccCCCCCH----HHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHh
Q psy7365         371 KSYIGYCPQFDALNDRLTP----REHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL  446 (601)
Q Consensus       371 ~~~ig~v~Q~~~l~~~lTv----~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~  446 (601)
                      +..++|+||++.+|+.+++    .|++.++..++|.+.    +.+++++                               
T Consensus        61 ~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~yg~~~----~~v~~~l-------------------------------  105 (219)
T 1s96_A           61 VHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGTSR----EAIEQVL-------------------------------  105 (219)
T ss_dssp             CBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH----HHHHHHH-------------------------------
T ss_pred             ccCceEEECCHHHHHHHHhcCHHHHHHHHHhccCCCCH----HHHHHHH-------------------------------
Confidence            4569999998877766666    455444333333221    1233333                               


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHh
Q psy7365         447 GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKY  521 (601)
Q Consensus       447 ~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~  521 (601)
                      ..++++|||     ||+.+++.+++.+.    ++.||+++||++++++.   |+  +.+|    .++++++.+++
T Consensus       106 ~~G~illLD-----LD~~~~~~i~~~l~----~~~tI~i~th~~~~l~~---Rl--~~rG----~~~~e~i~~rl  162 (219)
T 1s96_A          106 ATGVDVFLD-----IDWQGAQQIRQKMP----HARSIFILPPSKIELDR---RL--RGRG----QDSEEVIAKRM  162 (219)
T ss_dssp             TTTCEEEEE-----CCHHHHHHHHHHCT----TCEEEEEECSSHHHHHH---HH--HTTS----CSCHHHHHHHH
T ss_pred             hcCCeEEEE-----ECHHHHHHHHHHcc----CCEEEEEECCCHHHHHH---HH--HHcC----CCCHHHHHHHH
Confidence            336999999     99999999999876    58999999999999887   43  6777    68999988765

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.14  E-value=6.2e-07  Score=90.79  Aligned_cols=60  Identities=17%  Similarity=0.131  Sum_probs=50.8

Q ss_pred             HHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeC
Q psy7365         438 KLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVN  505 (601)
Q Consensus       438 Rl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~  505 (601)
                      |++||++|..+|+++++||||   |+.+...+   ++. ...|.+|+++||+.+ +...|||+++|..
T Consensus        88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~-~~~g~~vl~t~H~~~-~~~~~dri~~l~~  147 (261)
T 2eyu_A           88 ADALRAALREDPDVIFVGEMR---DLETVETA---LRA-AETGHLVFGTLHTNT-AIDTIHRIVDIFP  147 (261)
T ss_dssp             HHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHH-HHTTCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred             HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHH-HccCCEEEEEeCcch-HHHHHHHHhhhcC
Confidence            799999999999999999999   99886544   443 356999999999988 6788999988754

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.12  E-value=6.9e-08  Score=99.92  Aligned_cols=89  Identities=13%  Similarity=0.092  Sum_probs=68.5

Q ss_pred             hhhcccccccccCCCccceeecceEEe-------------------ec------ccCCCCCCCccccchhhhHHHhccCC
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEE-------------------QP------LGPSGITLGLHTLGLEFVSRSMLMGM  104 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl  104 (601)
                      +.+++|++.|+      ++++++||.+                   .+      +|||||  ||||     ++ ++|+|+
T Consensus        38 i~~~~v~~~y~------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~Gs--GKST-----l~-~~L~~~  103 (308)
T 1sq5_A           38 LSLEEVAEIYL------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAV--GKST-----TA-RVLQAL  103 (308)
T ss_dssp             CCHHHHHHTHH------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTS--SHHH-----HH-HHHHHH
T ss_pred             cchHhHHHHHH------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCC--CHHH-----HH-HHHHHH
Confidence            45899999983      4788888876                   32      999999  4554     44 699999


Q ss_pred             CC--CCeeEEEE---ccccCCCchHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhc
Q psy7365         105 LP--VSSGTAKI---YDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK  156 (601)
Q Consensus       105 ~~--~~~G~v~~---~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~  156 (601)
                      ++  |++|+|.+   +|....  . ..++.+|++ |...+++.+++.+++.+...+.
T Consensus       104 l~~~~~~G~i~vi~~d~~~~~--~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~  156 (308)
T 1sq5_A          104 LSRWPEHRRVELITTDGFLHP--N-QVLKERGLM-KKKGFPESYDMHRLVKFVSDLK  156 (308)
T ss_dssp             HTTSTTCCCEEEEEGGGGBCC--H-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred             HhhCCCCCeEEEEecCCccCc--H-HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence            98  99999999   887642  1 234567888 8888888899999998865543

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.11  E-value=3.4e-09  Score=107.54  Aligned_cols=133  Identities=9%  Similarity=-0.018  Sum_probs=87.7

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      ....++++.+.|+..    .+++++++++.+    +||||+  |||||      .++|+|.++  .|.|.++|.++.. .
T Consensus        48 ~~~~l~~l~~~~~~~----~~l~~~~~~~~~gvll~Gp~Gt--GKTtl------~~~i~~~~~--~~~i~~~~~~~~~~~  113 (278)
T 1iy2_A           48 AKEELKEIVEFLKNP----SRFHEMGARIPKGVLLVGPPGV--GKTHL------ARAVAGEAR--VPFITASGSDFVEMF  113 (278)
T ss_dssp             HHHHHHHHHHHHHCH----HHHHHTTCCCCCEEEEECCTTS--SHHHH------HHHHHHHTT--CCEEEEEHHHHHHST
T ss_pred             HHHHHHHHHHHHHCH----HHHHHcCCCCCCeEEEECCCcC--hHHHH------HHHHHHHcC--CCEEEecHHHHHHHH
Confidence            344567777776543    478889888865    999999  56654      468888875  7999999876532 1


Q ss_pred             hHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcC----CChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhc
Q psy7365         123 MTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQ----VPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDN  197 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~  197 (601)
                      ....++.++++||... .++.+++.|++.......+    ...++....+.++             ..+|||||+||+.+
T Consensus       114 ~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l-------------l~~lsgg~~~~~~i  180 (278)
T 1iy2_A          114 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-------------LVEMDGFEKDTAIV  180 (278)
T ss_dssp             TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHH-------------HHHHTTCCTTCCEE
T ss_pred             hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHH-------------HHHHhCCCCCCCEE
Confidence            1122345788999864 6777888888853322111    1122223333333             35689999999999


Q ss_pred             hhhhcchhhH
Q psy7365         198 VKVWFNNKAW  207 (601)
Q Consensus       198 ~~~~~~~~~~  207 (601)
                      +++..++|..
T Consensus       181 ~~a~t~~p~~  190 (278)
T 1iy2_A          181 VMAATNRPDI  190 (278)
T ss_dssp             EEEEESCTTS
T ss_pred             EEEecCCchh
Confidence            9998888764

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=98.08  E-value=3.2e-07  Score=90.03  Aligned_cols=59  Identities=25%  Similarity=0.191  Sum_probs=40.6

Q ss_pred             CCcEEEEecCCCCC--CHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhH--------HHhcCCEEEEecC
Q psy7365         277 PASTVILDEPTSGV--DPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDE--------ADLLGDRIAIIAA  339 (601)
Q Consensus       277 ~~~~liLDEPtsgL--D~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~--------~~~l~Drv~vL~~  339 (601)
                      +|+++++|+|++.+  |+..++.+...+.++.    +..|.|||+++|....        +...||.++.+..
T Consensus       128 ~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~----~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          128 NAKRVVVDSVTTLYINKPAMARSIILQLKRVL----AGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             TCCEEEEETSGGGTTTCGGGHHHHHHHHHHHH----HHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             CCCEEEECCchHhhcCCHHHHHHHHHHHHHHH----HHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            36899999999887  6543333433344332    2458999999998776        4578899999864

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.07  E-value=8.6e-09  Score=102.88  Aligned_cols=133  Identities=9%  Similarity=-0.018  Sum_probs=86.9

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      ....++++.+.|+..    .+++++++++.+    +||||+  |||||      .++|+|.+.  .|.+.++|.++.. .
T Consensus        24 ~~~~l~~l~~~~~~~----~~~~~~~~~~~~g~ll~G~~G~--GKTtl------~~~i~~~~~--~~~i~~~~~~~~~~~   89 (254)
T 1ixz_A           24 AKEELKEIVEFLKNP----SRFHEMGARIPKGVLLVGPPGV--GKTHL------ARAVAGEAR--VPFITASGSDFVEMF   89 (254)
T ss_dssp             HHHHHHHHHHHHHCH----HHHHHTTCCCCSEEEEECCTTS--SHHHH------HHHHHHHTT--CCEEEEEHHHHHHSC
T ss_pred             HHHHHHHHHHHHHCH----HHHHHcCCCCCCeEEEECCCCC--CHHHH------HHHHHHHhC--CCEEEeeHHHHHHHH
Confidence            344577787776543    478888888765    999999  56654      468888875  7999999876521 1


Q ss_pred             hHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcC----CChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhc
Q psy7365         123 MTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQ----VPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDN  197 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~  197 (601)
                      ....++.++++||... .++.+++.|++.......+    ...++..+.+.++             ..+|||||+||+.+
T Consensus        90 ~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~l-------------l~~l~g~~~~~~~i  156 (254)
T 1ixz_A           90 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-------------LVEMDGFEKDTAIV  156 (254)
T ss_dssp             TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHH-------------HHHHHTCCTTCCEE
T ss_pred             hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHH-------------HHHHhCCCCCCCEE
Confidence            1122345788899864 6677888888843322111    1122222333333             34688999999999


Q ss_pred             hhhhcchhhH
Q psy7365         198 VKVWFNNKAW  207 (601)
Q Consensus       198 ~~~~~~~~~~  207 (601)
                      +++..++|..
T Consensus       157 ~~a~t~~p~~  166 (254)
T 1ixz_A          157 VMAATNRPDI  166 (254)
T ss_dssp             EEEEESCGGG
T ss_pred             EEEccCCchh
Confidence            9999988764

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.02  E-value=1.2e-07  Score=91.47  Aligned_cols=78  Identities=10%  Similarity=-0.016  Sum_probs=54.1

Q ss_pred             ccccCcCChHHHHHH-HHHH---HHhCCCCEEEEEC--CCCCCCHHHHHHHHHHHHHHHhCCcEEEE----EccCh--hH
Q psy7365         425 DREVRTLSGGNKRKL-STAI---ALLGNTPLIFLDE--PTSGMDPGARRFLWTCIERAVSEGRCVIL----TSHNM--EE  492 (601)
Q Consensus       425 ~~~~~~LSgGqkQRl-~lA~---AL~~~P~lLlLDE--PTsGLD~~~~~~i~~lL~~l~~~G~tVll----sTHdl--~e  492 (601)
                      .++...+|+|||+++ ++++   |++++|+++||||  |+..+|+...+.+.+++.    +..++|+    +||+.  .+
T Consensus        78 ~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~~~~~ilgti~vsh~~~~~~  153 (189)
T 2i3b_A           78 GQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----TPGTIILGTIPVPKGKPLAL  153 (189)
T ss_dssp             SSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----CSSCCEEEECCCCCSSCCTT
T ss_pred             ceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----CCCcEEEEEeecCCCCchHH
Confidence            445567999999888 4444   5799999999999  899999976666655554    4445553    34986  55


Q ss_pred             HHhhCCEEEEEeCCEEEE
Q psy7365         493 CEALCTKLTIMVNGQFTC  510 (601)
Q Consensus       493 ~~~l~drv~iL~~G~iv~  510 (601)
                      ++++|+    +.+|+++.
T Consensus       154 vd~i~~----~~~~~i~~  167 (189)
T 2i3b_A          154 VEEIRN----RKDVKVFN  167 (189)
T ss_dssp             HHHHHT----TCCSEEEE
T ss_pred             HHHHee----cCCcEEEE
Confidence            555444    46666654

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.01  E-value=1.2e-05  Score=78.56  Aligned_cols=60  Identities=17%  Similarity=0.249  Sum_probs=41.1

Q ss_pred             CCCCEEEEECCCCCCCHH-------H-----HHHHHHHHHHHHhC-CcEEEEEccChhHHHh------------------
Q psy7365         447 GNTPLIFLDEPTSGMDPG-------A-----RRFLWTCIERAVSE-GRCVILTSHNMEECEA------------------  495 (601)
Q Consensus       447 ~~P~lLlLDEPTsGLD~~-------~-----~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~------------------  495 (601)
                      ++|+++++|||++.+|+.       +     ...++..|++++++ |+|||+++|...+.+.                  
T Consensus       118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~  197 (243)
T 1n0w_A          118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA  197 (243)
T ss_dssp             SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------C
T ss_pred             CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhh
Confidence            689999999999999985       3     34556666666544 9999999998876654                  


Q ss_pred             -hCCEEEEEeCC
Q psy7365         496 -LCTKLTIMVNG  506 (601)
Q Consensus       496 -l~drv~iL~~G  506 (601)
                       +||++++|++|
T Consensus       198 ~~~d~vi~l~~~  209 (243)
T 1n0w_A          198 HASTTRLYLRKG  209 (243)
T ss_dssp             CTTCEEEEEEEC
T ss_pred             hcCcEEEEEEEc
Confidence             89999999875

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.97  E-value=3.9e-06  Score=80.28  Aligned_cols=70  Identities=13%  Similarity=-0.035  Sum_probs=56.6

Q ss_pred             HHHHHcCCCcc-cccccCcCChHHHHH-HHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcE
Q psy7365         413 ESLNKFALGHY-SDREVRTLSGGNKRK-LSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC  482 (601)
Q Consensus       413 ~lLe~~~L~~~-~~~~~~~LSgGqkQR-l~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~t  482 (601)
                      ++++..++... ...++..+|+||+|| +..+++++.+|+++++|||||++|+.+..++++.|.++..+|.|
T Consensus       131 ~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~  202 (210)
T 1pui_A          131 EWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP  202 (210)
T ss_dssp             HHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred             HHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence            44556666543 356788899999999 89999999999999999999999999999999999998766644

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.97  E-value=1.6e-06  Score=91.74  Aligned_cols=59  Identities=17%  Similarity=0.135  Sum_probs=49.7

Q ss_pred             HHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCC
Q psy7365         440 STAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG  506 (601)
Q Consensus       440 ~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G  506 (601)
                      +||+||.++|++|++||||   |++.    ++.+.++++.|.+|++|+|+.+.+ ..|||++.|..|
T Consensus       188 ~La~aL~~~PdvillDEp~---d~e~----~~~~~~~~~~G~~vl~t~H~~~~~-~~~dRli~l~~~  246 (356)
T 3jvv_A          188 ALRSALREDPDIILVGEMR---DLET----IRLALTAAETGHLVFGTLHTTSAA-KTIDRVVDVFPA  246 (356)
T ss_dssp             HHHHHTTSCCSEEEESCCC---SHHH----HHHHHHHHHTTCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred             HHHHHhhhCcCEEecCCCC---CHHH----HHHHHHHHhcCCEEEEEEccChHH-HHHHHHhhhcCc
Confidence            9999999999999999999   6555    444445567799999999999988 779999988554

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.87  E-value=2.7e-05  Score=80.10  Aligned_cols=57  Identities=16%  Similarity=0.163  Sum_probs=42.2

Q ss_pred             hhhcccccccccCCCccceeecceEEeec-----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP-----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT  121 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~  121 (601)
                      ..++++++.|+...      ++++|+ .+     +||||+       ||||++ ..|+|++++..|+|.+.|.++..
T Consensus        77 ~~~~~l~~~~~~~~------~~i~~~-~~~~i~i~g~~G~-------GKTT~~-~~la~~~~~~~~~v~l~~~d~~~  138 (295)
T 1ls1_A           77 TVYEALKEALGGEA------RLPVLK-DRNLWFLVGLQGS-------GKTTTA-AKLALYYKGKGRRPLLVAADTQR  138 (295)
T ss_dssp             HHHHHHHHHTTSSC------CCCCCC-SSEEEEEECCTTT-------THHHHH-HHHHHHHHHTTCCEEEEECCSSC
T ss_pred             HHHHHHHHHHCCCC------ceeecC-CCeEEEEECCCCC-------CHHHHH-HHHHHHHHHcCCeEEEecCCccc
Confidence            45788888875421      667776 33     899999       445555 47899999999999999888743

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.85  E-value=6.8e-08  Score=95.15  Aligned_cols=58  Identities=12%  Similarity=0.060  Sum_probs=23.7

Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEE
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRI  334 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv  334 (601)
                      +|+..+++|++.+.|..+...+.+.|.+......+......+++.|+++++....+++
T Consensus       148 ~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~  205 (231)
T 3lnc_A          148 PPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNI  205 (231)
T ss_dssp             CSCHHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHH
Confidence            4556678888888887777666665554322111122345666777777666554443

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.84  E-value=8.9e-06  Score=76.49  Aligned_cols=47  Identities=19%  Similarity=0.221  Sum_probs=42.1

Q ss_pred             CCCCEEEEECCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHH
Q psy7365         447 GNTPLIFLDEPTS-GMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC  493 (601)
Q Consensus       447 ~~P~lLlLDEPTs-GLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~  493 (601)
                      .+|++|+||||++ ++|+..+..+++++.+..++|+++|++||...+.
T Consensus        99 ~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~  146 (180)
T 3ec2_A           99 LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR  146 (180)
T ss_dssp             HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred             cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence            4899999999985 9999999999999998888899999999987543

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.81  E-value=1.4e-08  Score=98.29  Aligned_cols=50  Identities=16%  Similarity=0.083  Sum_probs=33.9

Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecC
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA  339 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~  339 (601)
                      +|++++|||||+++|..+.+.+.+.|.+...      +.   ...|  + . ..+|+++++++
T Consensus       124 ~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~------~~---~~a~--~-~-~~~D~iivnd~  173 (198)
T 1lvg_A          124 PPSLDVLEQRLRLRNTETEESLAKRLAAART------DM---ESSK--E-P-GLFDLVIINDD  173 (198)
T ss_dssp             CSCHHHHHHHHHHHTCSCHHHHHHHHHHHHH------HT---TGGG--S-T-TTCSEEEECSS
T ss_pred             CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH------HH---HHhh--c-c-CCceEEEECCC
Confidence            4678889999999999888888887776521      11   1224  1 1 56888877653

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.71  E-value=3.3e-07  Score=88.85  Aligned_cols=33  Identities=21%  Similarity=0.303  Sum_probs=24.7

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCC---CeeEEEEccccC
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPV---SSGTAKIYDHDI  119 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~---~~G~v~~~g~~~  119 (601)
                      +|||||  |||||      .++|+|+++|   +.|.|.++|..+
T Consensus        28 ~G~sGs--GKSTl------~~~l~~~~~~~g~~~g~v~~d~~~~   63 (208)
T 3c8u_A           28 SGAPGS--GKSTL------SNPLAAALSAQGLPAEVVPMDGFHL   63 (208)
T ss_dssp             ECCTTS--CTHHH------HHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred             ECCCCC--CHHHH------HHHHHHHHhhcCCceEEEecCCCcC
Confidence            899999  56654      4699999986   467777766654

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.68  E-value=2.1e-05  Score=81.02  Aligned_cols=63  Identities=17%  Similarity=0.146  Sum_probs=40.6

Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEE-EecchhHHHhcCCEEEEecCCcccc
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVIL-TTHYMDEADLLGDRIAIIAAGKLQC  344 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~-~tHdl~~~~~l~Drv~vL~~GkIv~  344 (601)
                      ++++|+|  |+|+|+.....+.++.+-+. . ....+..+++ ++|..+.+.+.++++..++.+.++.
T Consensus       183 ~dlvIiD--T~G~~~~~~~~~~el~~~l~-~-~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl  246 (296)
T 2px0_A          183 YDHVFVD--TAGRNFKDPQYIDELKETIP-F-ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF  246 (296)
T ss_dssp             SSEEEEE--CCCCCTTSHHHHHHHHHHSC-C-CTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred             CCEEEEe--CCCCChhhHHHHHHHHHHHh-h-cCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence            6999999  89999887766665544321 0 0112334444 3899888888888876555555443

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.68  E-value=2.9e-06  Score=93.03  Aligned_cols=74  Identities=20%  Similarity=0.247  Sum_probs=56.7

Q ss_pred             ccccCcCChHHHHHHHHHHHHh--C---------------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEc
Q psy7365         425 DREVRTLSGGNKRKLSTAIALL--G---------------NTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS  487 (601)
Q Consensus       425 ~~~~~~LSgGqkQRl~lA~AL~--~---------------~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsT  487 (601)
                      ++..+.+||||+|-.-+|++.+  .               .=.+++|||. +-+|....+..+++++++   |.=+|++|
T Consensus       374 s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiat  449 (483)
T 3euj_A          374 RAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAA  449 (483)
T ss_dssp             ECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEE
T ss_pred             ecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEEC
Confidence            3457899999999655554432  1               2368999999 999999999999999987   77788888


Q ss_pred             cChhHHHhhCCEEEEEe
Q psy7365         488 HNMEECEALCTKLTIMV  504 (601)
Q Consensus       488 Hdl~e~~~l~drv~iL~  504 (601)
                      =+  .+..++|.++.+.
T Consensus       450 P~--~i~p~v~~~~~~~  464 (483)
T 3euj_A          450 PE--NISPERGTTYKLV  464 (483)
T ss_dssp             SS--SCCCSSSEEEECC
T ss_pred             cc--hhhhccCceEEEE
Confidence            77  5666677776553

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.66  E-value=2.6e-07  Score=91.93  Aligned_cols=100  Identities=11%  Similarity=0.041  Sum_probs=69.9

Q ss_pred             cccccCCCCcccCCCCCHHHHHHHhHH--------hcCCChhHHHHHHHHHHH--HcC------------CCcccccccC
Q psy7365         372 SYIGYCPQFDALNDRLTPREHLEFYSR--------VRNLPSVLLNTIVNESLN--KFA------------LGHYSDREVR  429 (601)
Q Consensus       372 ~~ig~v~Q~~~l~~~lTv~E~L~~~~~--------~~g~~~~~~~~~~~~lLe--~~~------------L~~~~~~~~~  429 (601)
                      ..+++++|+..+++..++.+++.....        +.+.+...  ..++.+.+  .++            +....++++.
T Consensus        74 ~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~  151 (246)
T 2bbw_A           74 EMAKQYIEKSLLVPDHVITRLMMSELENRRGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIH  151 (246)
T ss_dssp             HHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEE
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCc
Confidence            345566777777888889998876321        22333222  12233322  233            3334578889


Q ss_pred             cCChHHHHHHHHHHHH-hCCCCEEEEE----CCCCCCCHHHHHHHHHHHHHHHhCC
Q psy7365         430 TLSGGNKRKLSTAIAL-LGNTPLIFLD----EPTSGMDPGARRFLWTCIERAVSEG  480 (601)
Q Consensus       430 ~LSgGqkQRl~lA~AL-~~~P~lLlLD----EPTsGLD~~~~~~i~~lL~~l~~~G  480 (601)
                      +|||    |+   +|+ +.+|++++||    |||+|+|+.++..+++.++++.+++
T Consensus       152 ~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~  200 (246)
T 2bbw_A          152 PPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA  200 (246)
T ss_dssp             TTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred             CCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence            9999    66   677 9999999999    9999999999999999999887654

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.60  E-value=1.1e-06  Score=99.27  Aligned_cols=62  Identities=10%  Similarity=0.201  Sum_probs=45.7

Q ss_pred             CccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCe-eEEEEccccCCCchHHhcccEEEEccC
Q psy7365          64 IDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSS-GTAKIYDHDIRTDMTTIRRSLGVCPQY  136 (601)
Q Consensus        64 ~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~-G~v~~~g~~~~~~~~~~~~~ig~v~Q~  136 (601)
                      +...+++++++.+..      +||||+  ||||     +. ++|+|++++.. |.+.+++.+...    ....++++|+.
T Consensus        45 G~~~~l~~l~~~i~~g~~vll~Gp~Gt--GKTt-----la-r~ia~~l~~~~~~~~~~~~~~~~~----~~p~i~~~p~g  112 (604)
T 3k1j_A           45 GQEHAVEVIKTAANQKRHVLLIGEPGT--GKSM-----LG-QAMAELLPTETLEDILVFPNPEDE----NMPRIKTVPAC  112 (604)
T ss_dssp             SCHHHHHHHHHHHHTTCCEEEECCTTS--SHHH-----HH-HHHHHTSCCSSCEEEEEECCTTCT----TSCEEEEEETT
T ss_pred             CchhhHhhccccccCCCEEEEEeCCCC--CHHH-----HH-HHHhccCCcccCCeEEEeCCcccc----cCCcEEEEecc
Confidence            345578888887765      999999  4554     44 69999999887 888888876532    24468888875


Q ss_pred             C
Q psy7365         137 N  137 (601)
Q Consensus       137 ~  137 (601)
                      .
T Consensus       113 ~  113 (604)
T 3k1j_A          113 Q  113 (604)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.60  E-value=2.6e-07  Score=88.49  Aligned_cols=63  Identities=16%  Similarity=0.104  Sum_probs=45.0

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch-HHhcccEEEEccCCCCCCCCCHHHHHHHhH
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM-TTIRRSLGVCPQYNALFDKLTVEEHMWFYS  153 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~-~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~  153 (601)
                      +|||||  ||||     + .++|+|+++    .+.+.|.++.... ...+.+++|+||++..|+.+++.+++.+..
T Consensus        13 ~Gp~Gs--GKST-----l-~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (205)
T 3tr0_A           13 SAPSGA--GKTS-----L-VRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA   76 (205)
T ss_dssp             ECCTTS--CHHH-----H-HHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred             ECcCCC--CHHH-----H-HHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence            899999  5555     4 469999975    5777777664322 223567999999998888888777765433

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.56  E-value=3.6e-06  Score=90.88  Aligned_cols=101  Identities=11%  Similarity=0.030  Sum_probs=58.4

Q ss_pred             ccccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCC
Q psy7365         371 KSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTP  450 (601)
Q Consensus       371 ~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~  450 (601)
                      ...+++++|++.++..+|++|++.+.....+   ......+.+.++            ..++.+++||++||++++.+|+
T Consensus        74 ~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~------------~~~~~~l~qr~~IaRal~~d~~  138 (418)
T 2qag_C           74 VEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN---SNCWQPVIDYID------------SKFEDYLNAESRVNRRQMPDNR  138 (418)
T ss_dssp             EEEEECC------CEEEEEEECC--------------CHHHHHHHH------------HHHHHHTTTSCC-CCCCCCCC-
T ss_pred             eeeEEEEEecCCcccceeeeechhhhhhccc---hhhHHHHHHHHH------------HHHHHHHHHHHHHHHHhccCCC
Confidence            3568999999888888999999876433211   111111222222            1466778899999999999999


Q ss_pred             ---EEEEECCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEccChh
Q psy7365         451 ---LIFLDEPT-SGMDPGARRFLWTCIERAVSEGRCVILTSHNME  491 (601)
Q Consensus       451 ---lLlLDEPT-sGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~  491 (601)
                         +|++|||| .|||+...    ++++.+.. +.+||++.|-.+
T Consensus       139 ~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~D  178 (418)
T 2qag_C          139 VQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKAD  178 (418)
T ss_dssp             CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEESTT
T ss_pred             eeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEccc
Confidence               99999999 69999873    44455543 677777777554

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.51  E-value=6.2e-05  Score=79.51  Aligned_cols=70  Identities=13%  Similarity=0.030  Sum_probs=57.3

Q ss_pred             cccccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHH
Q psy7365         370 QKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL  445 (601)
Q Consensus       370 ~~~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL  445 (601)
                      ..+.++++||+..+++..+++++     .+++.+..+..+.+.++++.+++.++.++++.+|| ||+||++||+++
T Consensus       259 ~~~~i~~v~q~~~l~dtpgv~e~-----~l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl  328 (358)
T 2rcn_A          259 TAARLYHFPHGGDVIDSPGVREF-----GLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA  328 (358)
T ss_dssp             CCCEEEECTTSCEEEECHHHHTC-----CCCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred             EEEEEEEECCCCEecCcccHHHh-----hhcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence            34578999999888888888884     23455555666778889999999999999999999 999999999764

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.51  E-value=6.7e-07  Score=94.50  Aligned_cols=91  Identities=7%  Similarity=-0.097  Sum_probs=66.3

Q ss_pred             ccccCcCChHHHHHHHHHHHHh-CCCCEEEEEC---CC------CCCCHHHHHHHHHHHHHHHh-CCcEEEEEccChhHH
Q psy7365         425 DREVRTLSGGNKRKLSTAIALL-GNTPLIFLDE---PT------SGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEEC  493 (601)
Q Consensus       425 ~~~~~~LSgGqkQRl~lA~AL~-~~P~lLlLDE---PT------sGLD~~~~~~i~~lL~~l~~-~G~tVllsTHdl~e~  493 (601)
                      ++.+..+|+|++|+..+++++. .+|++++|||   |+      .++|+..+..+++.|+++.+ .|.+|++++|. .+.
T Consensus       253 ~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~  331 (365)
T 1lw7_A          253 TTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYL  331 (365)
T ss_dssp             HHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHH
Confidence            3445567788888888888774 6999999999   65      58999999999999988754 48999999976 688


Q ss_pred             HhhCCEEEEEeCCEEEEecCHHHHH
Q psy7365         494 EALCTKLTIMVNGQFTCLGSATHLK  518 (601)
Q Consensus       494 ~~l~drv~iL~~G~iv~~G~~~~L~  518 (601)
                      +++|+++.+|++  ++..+++++|+
T Consensus       332 ~r~~~~i~~i~~--~l~~~~~~~~~  354 (365)
T 1lw7_A          332 DRYNQVKAVIEK--VLNEEEISELQ  354 (365)
T ss_dssp             HHHHHHHHHHHH--HTSCCCCSSCC
T ss_pred             HHHHHHHHHHHH--HhcccchhHhh
Confidence            888888877754  44445555543

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=97.50  E-value=6.3e-06  Score=81.76  Aligned_cols=50  Identities=10%  Similarity=-0.000  Sum_probs=32.0

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC---------chHHhcccEEEEccC
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT---------DMTTIRRSLGVCPQY  136 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~---------~~~~~~~~ig~v~Q~  136 (601)
                      +|||||  ||||     + .++|+|+++|++|.|.++|.++..         .....+..++++||+
T Consensus        33 ~GpnGs--GKST-----l-l~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~   91 (227)
T 1qhl_A           33 SGGNGA--GKST-----T-MAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD   91 (227)
T ss_dssp             HSCCSH--HHHH-----H-HHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred             ECCCCC--CHHH-----H-HHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence            899999  4554     4 579999999999999999988732         122245689999984

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.44  E-value=4.4e-05  Score=78.95  Aligned_cols=33  Identities=18%  Similarity=0.210  Sum_probs=26.7

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccC
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI  119 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~  119 (601)
                      +||||+       ||||++ ..|+|.+++..|+|.+.+.|+
T Consensus       110 vG~~Gs-------GKTTl~-~~LA~~l~~~g~kV~lv~~D~  142 (306)
T 1vma_A          110 VGVNGT-------GKTTSC-GKLAKMFVDEGKSVVLAAADT  142 (306)
T ss_dssp             ECCTTS-------SHHHHH-HHHHHHHHHTTCCEEEEEECT
T ss_pred             EcCCCC-------hHHHHH-HHHHHHHHhcCCEEEEEcccc
Confidence            999999       455555 478899999999999988775

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.42  E-value=1.3e-07  Score=98.25  Aligned_cols=115  Identities=10%  Similarity=-0.039  Sum_probs=74.5

Q ss_pred             ccccccC---CCCcccCCCCCHHHHHHHhH------HhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHH
Q psy7365         371 KSYIGYC---PQFDALNDRLTPREHLEFYS------RVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST  441 (601)
Q Consensus       371 ~~~ig~v---~Q~~~l~~~lTv~E~L~~~~------~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~l  441 (601)
                      ++.++++   +|+..++++.++.|+..+..      .++..+......+++.++..+++.+..++.. +||+||+||+..
T Consensus        74 ~~~l~~l~~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~a  152 (318)
T 1nij_A           74 EDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYA  152 (318)
T ss_dssp             HHHHHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTC
T ss_pred             HHHHHHHHhHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhC
Confidence            4557777   67766666777777654320      0000000000011223345556665555544 799999999988


Q ss_pred             HHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCC
Q psy7365         442 AIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT  498 (601)
Q Consensus       442 A~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~d  498 (601)
                      +++++++|+++  |||         +.+.+.|++++ .+.+|+++||+..+++.+.|
T Consensus       153 d~ill~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~~~~l~~  197 (318)
T 1nij_A          153 DRILLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDIDLGLLFN  197 (318)
T ss_dssp             SEEEEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCCCGGGGSC
T ss_pred             CEEEEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCCCHHHHhC
Confidence            88888888887  888         78888888874 58999999998766666654

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.25  E-value=8.2e-05  Score=68.55  Aligned_cols=44  Identities=14%  Similarity=0.243  Sum_probs=37.7

Q ss_pred             HhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcE-EEEEccC
Q psy7365         445 LLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHN  489 (601)
Q Consensus       445 L~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~t-VllsTHd  489 (601)
                      ++.+|++|++|||++ +|+..++.+++++.++.++|++ +|++||.
T Consensus        80 ~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~  124 (149)
T 2kjq_A           80 AAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY  124 (149)
T ss_dssp             GGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred             HHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence            467899999999998 6666689999999998888888 8899985

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.24  E-value=9.6e-06  Score=83.27  Aligned_cols=90  Identities=18%  Similarity=0.131  Sum_probs=58.4

Q ss_pred             cccCCCCcccCCCCCHHHHHHHhH------HhcCCChhHHHHHHHHHHHHcCCC------c--ccccccCcCChHHHHHH
Q psy7365         374 IGYCPQFDALNDRLTPREHLEFYS------RVRNLPSVLLNTIVNESLNKFALG------H--YSDREVRTLSGGNKRKL  439 (601)
Q Consensus       374 ig~v~Q~~~l~~~lTv~E~L~~~~------~~~g~~~~~~~~~~~~lLe~~~L~------~--~~~~~~~~LSgGqkQRl  439 (601)
                      +.+|+|++.+++ .+.++|+.+..      ..+|.+.........+.++.+.-.      .  ........+||||+||+
T Consensus        65 ~~iv~~D~f~~~-~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~  143 (290)
T 1odf_A           65 IGYASIDDFYLT-HEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRC  143 (290)
T ss_dssp             EEEEEGGGGBCC-HHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEEC
T ss_pred             EEEeccccccCC-hHHHHHHhccccccchhhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCcccccc
Confidence            445588876654 47788887642      112334332334456666665432      1  12344568999999999


Q ss_pred             HHHHHHhCCCCEEEEECCCCCCCHH
Q psy7365         440 STAIALLGNTPLIFLDEPTSGMDPG  464 (601)
Q Consensus       440 ~lA~AL~~~P~lLlLDEPTsGLD~~  464 (601)
                      .+|++..-+|+|+|+||||+|+|+.
T Consensus       144 ~~a~~~~~~~~IlIlEG~~~~ld~~  168 (290)
T 1odf_A          144 PTGQKIKLPVDIFILEGWFLGFNPI  168 (290)
T ss_dssp             SSCEEEESSCSEEEEEESSTTCCCC
T ss_pred             ccccceEcCCCEEEEeCccccCCcc
Confidence            9873332289999999999999985

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.20  E-value=0.0006  Score=73.03  Aligned_cols=61  Identities=15%  Similarity=0.148  Sum_probs=46.7

Q ss_pred             CCCCEEEEECCCCCCCHHHH------------HHHHHHHHHHHhC-CcEEEEEccCh-------------------hHHH
Q psy7365         447 GNTPLIFLDEPTSGMDPGAR------------RFLWTCIERAVSE-GRCVILTSHNM-------------------EECE  494 (601)
Q Consensus       447 ~~P~lLlLDEPTsGLD~~~~------------~~i~~lL~~l~~~-G~tVllsTHdl-------------------~e~~  494 (601)
                      .+|+++++||||+.+|+...            .++++.|++++++ |.|||+++|..                   ..++
T Consensus       272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~  351 (400)
T 3lda_A          272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA  351 (400)
T ss_dssp             SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred             cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence            67999999999999997532            5677888888755 99999999983                   2357


Q ss_pred             hhCCEEEEEeCCE
Q psy7365         495 ALCTKLTIMVNGQ  507 (601)
Q Consensus       495 ~l~drv~iL~~G~  507 (601)
                      .+||.+++|++++
T Consensus       352 ~~ad~vl~L~~~~  364 (400)
T 3lda_A          352 YSSTTRLGFKKGK  364 (400)
T ss_dssp             HHCSEEEEEEECS
T ss_pred             HhcceEEEEEecC
Confidence            7789999998763

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.12  E-value=0.0013  Score=71.47  Aligned_cols=98  Identities=9%  Similarity=0.034  Sum_probs=69.6

Q ss_pred             HHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHh--CCCCEEEEECCCCCCCH--------HHHHHHHHHHHHHHh
Q psy7365         409 TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL--GNTPLIFLDEPTSGMDP--------GARRFLWTCIERAVS  478 (601)
Q Consensus       409 ~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~--~~P~lLlLDEPTsGLD~--------~~~~~i~~lL~~l~~  478 (601)
                      .++.+.++.++..+..-.....+|.++.+  ..++.+.  ++|+++++|+|+...++        ....++.+.|+.+++
T Consensus       274 ~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAk  351 (454)
T 2r6a_A          274 GKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALAR  351 (454)
T ss_dssp             HHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            34455555554444333345679999887  4555555  78999999999987743        334667777787765


Q ss_pred             C-CcEEEEEcc---------C--hh--------HHHhhCCEEEEEeCCEE
Q psy7365         479 E-GRCVILTSH---------N--ME--------ECEALCTKLTIMVNGQF  508 (601)
Q Consensus       479 ~-G~tVllsTH---------d--l~--------e~~~l~drv~iL~~G~i  508 (601)
                      + |.+||+++|         +  +.        .++..||.|++|+.++.
T Consensus       352 e~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~  401 (454)
T 2r6a_A          352 ELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY  401 (454)
T ss_dssp             HHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred             HhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence            5 999999999         3  22        57889999999988764

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.10  E-value=0.00042  Score=72.87  Aligned_cols=65  Identities=17%  Similarity=0.133  Sum_probs=40.7

Q ss_pred             CcEEEEecCCCCC----------CH---HHHHHHHHHHHHHhhhccccCCcEEEEEecchhH----------------HH
Q psy7365         278 ASTVILDEPTSGV----------DP---YSRRSIWELLIKVYYASHSLSGRTVILTTHYMDE----------------AD  328 (601)
Q Consensus       278 ~~~liLDEPtsgL----------D~---~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~----------------~~  328 (601)
                      |+++|+|||++.+          |+   ...+.+.+.++++.... +..|.|||+++|....                +.
T Consensus       140 ~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a-~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~  218 (349)
T 2zr9_A          140 LDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL-NNSGTTAIFINELREKIGVMFGSPETTTGGKALK  218 (349)
T ss_dssp             CSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHH-HHHTCEEEEEEECC-----------CCSSHHHHH
T ss_pred             CCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHH-HHhCCEEEEEeccccccCcccCCCcccCCchHhh
Confidence            6899999999988          33   22234455555553211 2358999999996541                45


Q ss_pred             hcCCEEEEecCCccc
Q psy7365         329 LLGDRIAIIAAGKLQ  343 (601)
Q Consensus       329 ~l~Drv~vL~~GkIv  343 (601)
                      ..||.++.+..+++.
T Consensus       219 ~~ad~~l~lrr~~~~  233 (349)
T 2zr9_A          219 FYASVRLDVRRIETL  233 (349)
T ss_dssp             HHCSEEEEEEEEEEE
T ss_pred             hccceEEEEEEeeee
Confidence            678877777665543

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.09  E-value=3.5e-05  Score=73.06  Aligned_cols=25  Identities=12%  Similarity=0.319  Sum_probs=22.2

Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHH
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIK  304 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~  304 (601)
                      |+++++|  ||++|+.....+++.|.+
T Consensus       164 ~~~~~ld--~Sald~~~v~~l~~~l~~  188 (191)
T 1oix_A          164 NGLSFIE--TSALDSTNVEAAFQTILT  188 (191)
T ss_dssp             TTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred             cCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence            5789999  999999999999998865

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.06  E-value=1.9e-06  Score=81.58  Aligned_cols=104  Identities=11%  Similarity=-0.037  Sum_probs=63.9

Q ss_pred             cccccCCCCcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCccc--ccccCcCChHHHHHHHHHHHHhCCC
Q psy7365         372 SYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYS--DREVRTLSGGNKRKLSTAIALLGNT  449 (601)
Q Consensus       372 ~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~--~~~~~~LSgGqkQRl~lA~AL~~~P  449 (601)
                      +.++|++|+..  +..++.+++.+...........  ..++.+++.+++....  +.++..+|+|++||+.++|++..+|
T Consensus        53 ~~~~~~~~~~~--~~~~v~~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~  128 (191)
T 1zp6_A           53 RIDPWLPQSHQ--QNRMIMQIAADVAGRYAKEGYF--VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGG  128 (191)
T ss_dssp             CCCTTSSSHHH--HHHHHHHHHHHHHHHHHHTSCE--EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCT
T ss_pred             cccCCccchhh--hhHHHHHHHHHHHHHHhccCCe--EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCC
Confidence            44789998754  4568888887654321000000  0011111122222222  4456789999999999999999999


Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEc
Q psy7365         450 PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS  487 (601)
Q Consensus       450 ~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsT  487 (601)
                      +++        +|+..++.+++.+..+...+..+|.++
T Consensus       129 ~~l--------ld~~~~~~~~~~~~~l~~~~~~~i~t~  158 (191)
T 1zp6_A          129 DSL--------SDPLVVADLHSQFADLGAFEHHVLPVS  158 (191)
T ss_dssp             TSC--------CCHHHHHHHHHHTTCCGGGGGGEEECT
T ss_pred             Ccc--------CCHHHHHHHHHHHhccCcccccEEECC
Confidence            876        699988888888877644333444444

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.99  E-value=5.3e-05  Score=81.79  Aligned_cols=162  Identities=14%  Similarity=0.114  Sum_probs=98.2

Q ss_pred             cchhHHHhcCCE--EEEecCCccccccCccccccccccccccccccC---CcccccccccCCCCcccCCCCCHHHHHHHh
Q psy7365         322 HYMDEADLLGDR--IAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMK---SAPQKSYIGYCPQFDALNDRLTPREHLEFY  396 (601)
Q Consensus       322 Hdl~~~~~l~Dr--v~vL~~GkIv~~G~~~lLk~~~g~g~~igld~~---~~~~~~~ig~v~Q~~~l~~~lTv~E~L~~~  396 (601)
                      +++++...-+..  ++++|...   .|++++++.-.+.. +.+.+..   ....++.++|++|++.+++.+|+.|++.|.
T Consensus        31 ~~vsl~i~~Gei~~vaLvG~nG---aGKSTLln~L~G~~-l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g  106 (427)
T 2qag_B           31 QLVNKSVSQGFCFNILCVGETG---LGKSTLMDTLFNTK-FEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG  106 (427)
T ss_dssp             HHHHHSCC-CCEEEEEEECSTT---SSSHHHHHHHHTSC-C-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred             CCCceEecCCCeeEEEEECCCC---CCHHHHHHHHhCcc-ccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence            677777888888  88887522   56666655322221 1111111   112345799999999888889999988654


Q ss_pred             HHhcC-CChh----HHHHHHHHHHHHc-CCCc----ccccc----c-------CcCChHHHHHHHHHHHHhCCCCEEEEE
Q psy7365         397 SRVRN-LPSV----LLNTIVNESLNKF-ALGH----YSDRE----V-------RTLSGGNKRKLSTAIALLGNTPLIFLD  455 (601)
Q Consensus       397 ~~~~g-~~~~----~~~~~~~~lLe~~-~L~~----~~~~~----~-------~~LSgGqkQRl~lA~AL~~~P~lLlLD  455 (601)
                      ..... ..+.    .....+.++|+.. ++..    ..+.+    +       ..|+-..   +.++++|..+++++++|
T Consensus       107 ~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi  183 (427)
T 2qag_B          107 DQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPII  183 (427)
T ss_dssp             C-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEE
T ss_pred             hccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEE
Confidence            22100 0011    1233455566654 4431    12222    1       1455554   78999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHH-HHhCCcEEEEEccCh
Q psy7365         456 EPTSGMDPGARRFLWTCIER-AVSEGRCVILTSHNM  490 (601)
Q Consensus       456 EPTsGLD~~~~~~i~~lL~~-l~~~G~tVllsTHdl  490 (601)
                      |||..|.+.....+.+.|++ +...|.+|+.+|.|-
T Consensus       184 ~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d  219 (427)
T 2qag_B          184 AKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD  219 (427)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred             cchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence            99999999999999999986 777899999998763

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=96.96  E-value=6.6e-07  Score=95.78  Aligned_cols=114  Identities=14%  Similarity=0.074  Sum_probs=85.0

Q ss_pred             cCCCCcccCCCCCHHHHH--HHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCC--CE
Q psy7365         376 YCPQFDALNDRLTPREHL--EFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNT--PL  451 (601)
Q Consensus       376 ~v~Q~~~l~~~lTv~E~L--~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P--~l  451 (601)
                      ++++.++++...+..|++  .|...++...         .++..++..  .+..+..+|+++            +|  ++
T Consensus        88 ~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d---------~il~Vvd~~--~d~~i~~v~~~~------------dP~~di  144 (392)
T 1ni3_A           88 TVFDIAGLTKGASTGVGLGNAFLSHVRAVD---------AIYQVVRAF--DDAEIIHVEGDV------------DPIRDL  144 (392)
T ss_dssp             EEECTGGGCCCCCSSSSSCHHHHHHHTTCS---------EEEEEEECC--CTTCSSCCSSSS------------CHHHHH
T ss_pred             EEEeccccccCCcHHHHHHHHHHHHHHHHH---------HHHHHHhcc--ccceeeeecccc------------Ccchhh
Confidence            566777777777766655  4444443321         122233332  245566677764            99  99


Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEccChhHHHhhCCEEE-EEeCC-EEEEecCH
Q psy7365         452 IFLDEPTSGMDPGARRFLWTCIERA-VSEGRCVILTSHNMEECEALCTKLT-IMVNG-QFTCLGSA  514 (601)
Q Consensus       452 LlLDEPTsGLD~~~~~~i~~lL~~l-~~~G~tVllsTHdl~e~~~l~drv~-iL~~G-~iv~~G~~  514 (601)
                      +++|||+.++|+..++..++.++.+ .+.|.||+  +|++.+++.+|+++. +|++| +++..|+.
T Consensus       145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~  208 (392)
T 1ni3_A          145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW  208 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred             hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence            9999999999999999999999998 66687864  999999999999999 99999 88876654

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.95  E-value=0.00037  Score=75.64  Aligned_cols=62  Identities=11%  Similarity=-0.037  Sum_probs=43.0

Q ss_pred             CCcEEEEecCCCCCCH--------HHHHHHHHHHHHHhhhccccCCcEEEEEec---------c--hh--------HHHh
Q psy7365         277 PASTVILDEPTSGVDP--------YSRRSIWELLIKVYYASHSLSGRTVILTTH---------Y--MD--------EADL  329 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~--------~~~~~l~~~l~~l~~~~~~~~G~TVI~~tH---------d--l~--------~~~~  329 (601)
                      +|+++|+|+++.-.++        .....+...|+.+.    +..|++||+++|         +  ..        .+..
T Consensus       313 ~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lA----ke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~  388 (454)
T 2r6a_A          313 GLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALA----RELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQ  388 (454)
T ss_dssp             CCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHH----HHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHH
T ss_pred             CCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHH----HHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHh
Confidence            3689999999977642        23345555565552    235899999999         2  22        4677


Q ss_pred             cCCEEEEecCCcc
Q psy7365         330 LGDRIAIIAAGKL  342 (601)
Q Consensus       330 l~Drv~vL~~GkI  342 (601)
                      .||.|+++..++.
T Consensus       389 ~aD~vi~l~r~~~  401 (454)
T 2r6a_A          389 DADIVAFLYRDDY  401 (454)
T ss_dssp             HCSEEEEEEETTC
T ss_pred             hCCEEEEEecccc
Confidence            8999999987664

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.93  E-value=0.00083  Score=69.48  Aligned_cols=46  Identities=17%  Similarity=0.255  Sum_probs=38.6

Q ss_pred             HhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhH
Q psy7365         445 LLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE  492 (601)
Q Consensus       445 L~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e  492 (601)
                      +..+|+++|+|||++ ||+.++..+++.+.+.. .+.++|++||+.+.
T Consensus       131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~t~~~~~  176 (354)
T 1sxj_E          131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSP  176 (354)
T ss_dssp             ---CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCS
T ss_pred             cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEEeCCHHH
Confidence            788999999999999 99999999999998863 46899999999764

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.93  E-value=2.1e-05  Score=75.52  Aligned_cols=61  Identities=13%  Similarity=0.038  Sum_probs=42.6

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCCCCCCCHHHHHHH
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWF  151 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~  151 (601)
                      +|||||  ||||+     + ++|+|.+    |.+.++|.++.......+...|++||++..++.+++.+++..
T Consensus        35 ~G~~Gs--GKSTl-----~-~~L~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   95 (200)
T 4eun_A           35 MGVSGS--GKTTI-----A-HGVADET----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD   95 (200)
T ss_dssp             ECCTTS--CHHHH-----H-HHHHHHH----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             ECCCCC--CHHHH-----H-HHHHHhh----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence            899999  55554     4 5788876    899999988764333333456889998766656666666544

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=96.90  E-value=4.5e-05  Score=80.76  Aligned_cols=108  Identities=14%  Similarity=0.181  Sum_probs=55.8

Q ss_pred             eecccCCCCCCCccccchhhhHHHhccCCCC-----------CCeeEEEEccccCCCchHHhcccEEEEccCCCCC-CC-
Q psy7365          76 EQPLGPSGITLGLHTLGLEFVSRSMLMGMLP-----------VSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNALF-DK-  142 (601)
Q Consensus        76 ~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~-----------~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~~-~~-  142 (601)
                      +.-+|++|+  |||||     . +.++|...           |++|.+.++|.++.     +....|++.|.|... .. 
T Consensus       182 V~lvG~~na--GKSTL-----l-n~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~-----l~DT~G~i~~lp~~lve~f  248 (364)
T 2qtf_A          182 IGIVGYTNS--GKTSL-----F-NSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM-----LVDTVGFIRGIPPQIVDAF  248 (364)
T ss_dssp             EEEECBTTS--SHHHH-----H-HHHHCC-----------CCSCEEEEEETTEEEE-----EEECCCBCSSCCGGGHHHH
T ss_pred             EEEECCCCC--CHHHH-----H-HHHHCCCccccCCcccccCCEEEEEEECCEEEE-----EEeCCCchhcCCHHHHHHH
Confidence            445999999  56554     4 57777755           57899999886541     112345555433210 00 


Q ss_pred             CCHHHHHHHh---HhhcCC--Ch---HHHHHHHHHHHHHcCCCccc----CCccccCChHHHhhhh
Q psy7365         143 LTVEEHMWFY---SQLKQV--PK---DLAQLEISNMIGDLGIPHKR----TSLANTLSGGMQRKLD  196 (601)
Q Consensus       143 ~tv~e~l~~~---~~~~~~--~~---~~~~~~~~~~l~~~gl~~~~----~~~~~~LSgG~~qr~~  196 (601)
                      .+..+++.-.   ......  +.   .+....+.++++.+++.+..    ..++..+|+|++|++.
T Consensus       249 ~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~  314 (364)
T 2qtf_A          249 FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLD  314 (364)
T ss_dssp             HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHH
T ss_pred             HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHH
Confidence            0011111000   000111  11   12223456778888876544    5567888989888765

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.86  E-value=0.00028  Score=74.81  Aligned_cols=59  Identities=19%  Similarity=0.148  Sum_probs=47.5

Q ss_pred             HHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEe
Q psy7365         438 KLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMV  504 (601)
Q Consensus       438 Rl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~  504 (601)
                      +.+|+.+|..+|+++++|||+   |+...   +..++. ...|.+|+.++|+.+ +...|||++.|.
T Consensus       199 ~~~l~~~L~~~pd~illdE~~---d~e~~---~~~l~~-~~~g~~vi~t~H~~~-~~~~~~rl~~l~  257 (372)
T 2ewv_A          199 ADALRAALREDPDVIFVGEMR---DLETV---ETALRA-AETGHLVFGTLHTNT-AIDTIHRIVDIF  257 (372)
T ss_dssp             HHHHHHHTTSCCSEEEESCCC---SHHHH---HHHHHH-HTTTCEEEECCCCCS-HHHHHHHHHHTS
T ss_pred             HHHHHHHhhhCcCEEEECCCC---CHHHH---HHHHHH-HhcCCEEEEEECcch-HHHHHHHHHHhc
Confidence            469999999999999999999   77653   344544 356899999999966 888899987664

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.72  E-value=0.0025  Score=61.91  Aligned_cols=59  Identities=17%  Similarity=0.117  Sum_probs=44.4

Q ss_pred             CCCCEEEEECCCCCC--CHHHHHHHHHHHHHH-HhCCcEEEEEccChhH--------HHhhCCEEEEEeC
Q psy7365         447 GNTPLIFLDEPTSGM--DPGARRFLWTCIERA-VSEGRCVILTSHNMEE--------CEALCTKLTIMVN  505 (601)
Q Consensus       447 ~~P~lLlLDEPTsGL--D~~~~~~i~~lL~~l-~~~G~tVllsTHdl~e--------~~~l~drv~iL~~  505 (601)
                      .+|+++++|+|++.+  |+..++++...+.++ ++.|.||++++|...+        ++.+||.|+.|+.
T Consensus       127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            379999999999988  664444444444444 5669999999999876        5788999999975

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.66  E-value=3.7e-05  Score=84.73  Aligned_cols=134  Identities=9%  Similarity=-0.003  Sum_probs=85.1

Q ss_pred             chhhhhcccccccccCCCccceeecceEEeec----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          47 AYVSLFESLSENRDKLGIDSYGISDTSLEEQP----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      .....++++.+.++.+    ..++++++.+..    .||+|+  |||||     . +.|+|...  .|.+.++|.++...
T Consensus        38 ~~k~~l~~lv~~l~~~----~~~~~lg~~ip~GvLL~GppGt--GKTtL-----a-raIa~~~~--~~~i~i~g~~~~~~  103 (499)
T 2dhr_A           38 EAKEELKEIVEFLKNP----SRFHEMGARIPKGVLLVGPPGV--GKTHL-----A-RAVAGEAR--VPFITASGSDFVEM  103 (499)
T ss_dssp             HHHHHHHHHHHHHHCG----GGTTTTSCCCCSEEEEECSSSS--SHHHH-----H-HHHHHHTT--CCEEEEEGGGGTSS
T ss_pred             HHHHHHHHHHHHhhch----hhhhhccCCCCceEEEECCCCC--CHHHH-----H-HHHHHHhC--CCEEEEehhHHHHh
Confidence            3445567776665443    267788887765    999999  56654     4 68888875  78999999876432


Q ss_pred             -hHHhcccEEEEccCCC-CCCCCCHHHHHHHhHhhcC----CChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhh
Q psy7365         123 -MTTIRRSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQ----VPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLD  196 (601)
Q Consensus       123 -~~~~~~~ig~v~Q~~~-~~~~~tv~e~l~~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~  196 (601)
                       .....+.++.+||... ..+.+.+.|++.......+    ...++....+.+++.             .||||++|+..
T Consensus       104 ~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~-------------~Ldg~~~~~~v  170 (499)
T 2dhr_A          104 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-------------EMDGFEKDTAI  170 (499)
T ss_dssp             CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH-------------HGGGCCSSCCC
T ss_pred             hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH-------------HhcccccCccE
Confidence             2222345677888864 5666677777743221111    122333334444443             57899999988


Q ss_pred             chhhhcchhhH
Q psy7365         197 NVKVWFNNKAW  207 (601)
Q Consensus       197 ~~~~~~~~~~~  207 (601)
                      ++.+..|+|..
T Consensus       171 iviAatn~p~~  181 (499)
T 2dhr_A          171 VVMAATNRPDI  181 (499)
T ss_dssp             EEEECCSCGGG
T ss_pred             EEEEecCChhh
Confidence            88888888754

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.63  E-value=3.4e-05  Score=73.40  Aligned_cols=26  Identities=12%  Similarity=0.249  Sum_probs=22.2

Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHH
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKV  305 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l  305 (601)
                      |++.++|  ||++|+.....+++.|.+.
T Consensus       140 ~~~~~~d--~Sal~~~~i~~l~~~l~~~  165 (199)
T 2f9l_A          140 NNLSFIE--TSALDSTNVEEAFKNILTE  165 (199)
T ss_dssp             TTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred             cCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence            4788999  9999999999998887654

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=96.38  E-value=0.00048  Score=74.18  Aligned_cols=82  Identities=21%  Similarity=0.129  Sum_probs=58.9

Q ss_pred             HHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEE-EccCh
Q psy7365         412 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL-TSHNM  490 (601)
Q Consensus       412 ~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVll-sTHdl  490 (601)
                      +.++..+++.   ++++.+||+|++|++.+|++|+..|.++++    +++|+..+..+.++.+.+.+.|.++++ |+|.-
T Consensus       237 ~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g  309 (416)
T 1udx_A          237 RVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVSALTG  309 (416)
T ss_dssp             SEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTC
T ss_pred             HhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEECCCc
Confidence            3345555665   667889999999999999999999999999    999998773333333444455766655 55666


Q ss_pred             hHHHhhCCEE
Q psy7365         491 EECEALCTKL  500 (601)
Q Consensus       491 ~e~~~l~drv  500 (601)
                      +.++.+++.+
T Consensus       310 ~gi~eL~~~i  319 (416)
T 1udx_A          310 AGLPALKEAL  319 (416)
T ss_dssp             TTHHHHHHHH
T ss_pred             cCHHHHHHHH
Confidence            6666665544

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.32  E-value=0.0082  Score=62.96  Aligned_cols=75  Identities=15%  Similarity=0.111  Sum_probs=52.4

Q ss_pred             HHHHHHHhC--CCCEEEEECCCCCC----------CH---HHHHHHHHHHHHH----HhCCcEEEEEccChhH-------
Q psy7365         439 LSTAIALLG--NTPLIFLDEPTSGM----------DP---GARRFLWTCIERA----VSEGRCVILTSHNMEE-------  492 (601)
Q Consensus       439 l~lA~AL~~--~P~lLlLDEPTsGL----------D~---~~~~~i~~lL~~l----~~~G~tVllsTHdl~e-------  492 (601)
                      +.++.+++.  +|+++++|||++.+          |+   ...+.+.+.++++    ++.|+|||+++|....       
T Consensus       128 l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~  207 (349)
T 2zr9_A          128 LEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGS  207 (349)
T ss_dssp             HHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------
T ss_pred             HHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCC
Confidence            446777764  49999999999998          33   2223445555554    4559999999997642       


Q ss_pred             ---------HHhhCCEEEEEeCCEEEEecC
Q psy7365         493 ---------CEALCTKLTIMVNGQFTCLGS  513 (601)
Q Consensus       493 ---------~~~l~drv~iL~~G~iv~~G~  513 (601)
                               ++.+||.++.++++++...|+
T Consensus       208 p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~  237 (349)
T 2zr9_A          208 PETTTGGKALKFYASVRLDVRRIETLKDGT  237 (349)
T ss_dssp             --CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred             CcccCCchHhhhccceEEEEEEeeeeecCc
Confidence                     567899999999887765554

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.28  E-value=0.0011  Score=69.08  Aligned_cols=135  Identities=9%  Similarity=-0.043  Sum_probs=80.3

Q ss_pred             cCCEEEEecCCccccccCccccc-------cccccccccccccCCcc-------cccccc--cCCCCcccCCCCCHHHHH
Q psy7365         330 LGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSAP-------QKSYIG--YCPQFDALNDRLTPREHL  393 (601)
Q Consensus       330 l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~~-------~~~~ig--~v~Q~~~l~~~lTv~E~L  393 (601)
                      -+..+++++...   .|+++.++       +..++..+.+.|.....       .++++|  |++|...+++.+++++++
T Consensus       128 ~g~vi~lvG~nG---aGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l  204 (328)
T 3e70_C          128 KPYVIMFVGFNG---SGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI  204 (328)
T ss_dssp             SSEEEEEECCTT---SSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred             CCeEEEEECCCC---CCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence            456677776422   45554332       22334444444443211       123444  899998888889999999


Q ss_pred             HHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHH
Q psy7365         394 EFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCI  473 (601)
Q Consensus       394 ~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL  473 (601)
                      .+.... +...        -+++..|..+..+..+.+||+       +++++..++.+++||.+| |      +.+.+.+
T Consensus       205 ~~~~~~-~~d~--------vliDtaG~~~~~~~l~~eL~~-------i~ral~~de~llvLDa~t-~------~~~~~~~  261 (328)
T 3e70_C          205 QHAKAR-GIDV--------VLIDTAGRSETNRNLMDEMKK-------IARVTKPNLVIFVGDALA-G------NAIVEQA  261 (328)
T ss_dssp             HHHHHH-TCSE--------EEEEECCSCCTTTCHHHHHHH-------HHHHHCCSEEEEEEEGGG-T------THHHHHH
T ss_pred             HHHHhc-cchh--------hHHhhccchhHHHHHHHHHHH-------HHHHhcCCCCEEEEecHH-H------HHHHHHH
Confidence            764321 1110        023444554444455555553       889999999999999555 4      3555566


Q ss_pred             HHHHh-CCcEEEEEccCh
Q psy7365         474 ERAVS-EGRCVILTSHNM  490 (601)
Q Consensus       474 ~~l~~-~G~tVllsTHdl  490 (601)
                      +.+.+ .+.|+|++||.-
T Consensus       262 ~~~~~~~~it~iilTKlD  279 (328)
T 3e70_C          262 RQFNEAVKIDGIILTKLD  279 (328)
T ss_dssp             HHHHHHSCCCEEEEECGG
T ss_pred             HHHHHhcCCCEEEEeCcC
Confidence            66653 489999999953

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.18  E-value=0.00093  Score=69.40  Aligned_cols=72  Identities=10%  Similarity=-0.004  Sum_probs=49.6

Q ss_pred             ecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch-----HHh-----cccEEEE
Q psy7365          70 SDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM-----TTI-----RRSLGVC  133 (601)
Q Consensus        70 ~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~-----~~~-----~~~ig~v  133 (601)
                      ++++|++.+      +||||+       ||||++. .|++.+.+..|+|.+.+.|+....     ...     +..++++
T Consensus        96 ~~l~~~~~~~~vI~ivG~~G~-------GKTT~~~-~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vi  167 (320)
T 1zu4_A           96 YRIDFKENRLNIFMLVGVNGT-------GKTTSLA-KMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLV  167 (320)
T ss_dssp             CCCCCCTTSCEEEEEESSTTS-------SHHHHHH-HHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEE
T ss_pred             cCccccCCCCeEEEEECCCCC-------CHHHHHH-HHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEE
Confidence            577776544      899999       4555554 778999999999999998886432     122     5679999


Q ss_pred             -ccCCCCCCCCCHHHHH
Q psy7365         134 -PQYNALFDKLTVEEHM  149 (601)
Q Consensus       134 -~Q~~~~~~~~tv~e~l  149 (601)
                       +|....++..++.+++
T Consensus       168 p~~~~~~~p~~~~~~~l  184 (320)
T 1zu4_A          168 KANKLNADPASVVFDAI  184 (320)
T ss_dssp             CCSSTTCCHHHHHHHHH
T ss_pred             eCCCCCCCHHHHHHHHH
Confidence             7765555443444444

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.11  E-value=0.00036  Score=71.77  Aligned_cols=70  Identities=6%  Similarity=-0.022  Sum_probs=52.3

Q ss_pred             ccccCCCCcccC-----CCCCHHHHH--HHh------HHhcC-CChhHHHHHHHHHHHHcCCCc-ccccccCcCChHHHH
Q psy7365         373 YIGYCPQFDALN-----DRLTPREHL--EFY------SRVRN-LPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKR  437 (601)
Q Consensus       373 ~ig~v~Q~~~l~-----~~lTv~E~L--~~~------~~~~g-~~~~~~~~~~~~lLe~~~L~~-~~~~~~~~LSgGqkQ  437 (601)
                      .+||++|.|.+.     +.+|+ |++  .|.      +++++ .+..+...++.++++.++|.+ ..++++..|||.++|
T Consensus       216 ~~g~v~d~pg~~~~~l~~~lt~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R  294 (302)
T 2yv5_A          216 KGSFVGDTPGFSKVEATMFVKP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEE  294 (302)
T ss_dssp             TTEEEESSCCCSSCCGGGTSCG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTT
T ss_pred             CCcEEEECcCcCcCcccccCCH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            689999998654     67899 777  332      12333 233334457899999999986 788999999998889


Q ss_pred             HHHHHH
Q psy7365         438 KLSTAI  443 (601)
Q Consensus       438 Rl~lA~  443 (601)
                      ++.||+
T Consensus       295 ~~~~~~  300 (302)
T 2yv5_A          295 IKELCR  300 (302)
T ss_dssp             HHHHSS
T ss_pred             HHHHhc
Confidence            998875

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.05  E-value=0.0078  Score=57.28  Aligned_cols=43  Identities=19%  Similarity=0.284  Sum_probs=30.6

Q ss_pred             CCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHH--HhcCCEEEEecC
Q psy7365         290 VDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA--DLLGDRIAIIAA  339 (601)
Q Consensus       290 LD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~--~~l~Drv~vL~~  339 (601)
                      ++|..+..+++.+...       .+.++|+.+|.+.+.  ...||+++++..
T Consensus        88 ~~p~v~~~~~~~~~~~-------~~~~vv~~~~~l~e~~~~~~~d~vi~l~~  132 (206)
T 1jjv_A           88 LHPAIRERMKQKLAEQ-------TAPYTLFVVPLLIENKLTALCDRILVVDV  132 (206)
T ss_dssp             HHHHHHHHHHHHHHTC-------CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred             cCHHHHHHHHHHHHhc-------CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence            4577777777666432       355888888988776  678899888864

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=95.97  E-value=0.0026  Score=73.73  Aligned_cols=77  Identities=12%  Similarity=0.118  Sum_probs=63.3

Q ss_pred             ccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEE-ccChhHHHhhCCEEE
Q psy7365         425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTS-GMDPGARRFLWTCIERAVSEGRCVILT-SHNMEECEALCTKLT  501 (601)
Q Consensus       425 ~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTs-GLD~~~~~~i~~lL~~l~~~G~tVlls-THdl~e~~~l~drv~  501 (601)
                      +.++.-+|.|+.+|..++..++.+++++|+|||.. ++|......+++.+.....+..+|++| ||+.+.+..+++...
T Consensus       185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~  263 (773)
T 2xau_A          185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAP  263 (773)
T ss_dssp             TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCC
T ss_pred             CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCCC
Confidence            45677899999999999999999999999999996 999887777776666654456788886 999998888877533

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=95.88  E-value=0.016  Score=60.69  Aligned_cols=41  Identities=10%  Similarity=0.118  Sum_probs=31.7

Q ss_pred             cEEEEe-cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEe--cchh
Q psy7365         279 STVILD-EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTT--HYMD  325 (601)
Q Consensus       279 ~~liLD-EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~t--Hdl~  325 (601)
                      -++++| +|..++|......+++.+.+..      .++++|++.  ||+.
T Consensus       250 illV~D~s~~~~~~~~~~~~~~~~i~~~~------~~~piilV~NK~Dl~  293 (357)
T 2e87_A          250 IIYIFDPSEHCGFPLEEQIHLFEEVHGEF------KDLPFLVVINKIDVA  293 (357)
T ss_dssp             EEEEECTTCTTSSCHHHHHHHHHHHHHHT------TTSCEEEEECCTTTC
T ss_pred             EEEEEeCCccccCCHHHHHHHHHHHHHhc------CCCCEEEEEECcccC
Confidence            478899 9999999998887777776641      267888888  7764

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=95.82  E-value=6.9e-05  Score=78.78  Aligned_cols=60  Identities=20%  Similarity=0.198  Sum_probs=38.5

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec---ccCCCCCCCccccchhhhHHHhccC--CCCCCeeEEEEccc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP---LGPSGITLGLHTLGLEFVSRSMLMG--MLPVSSGTAKIYDH  117 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~g~~~g~~~~g~~~~~~~~l~G--l~~~~~G~v~~~g~  117 (601)
                      +..++++.+.++..+ ...+|+++++++..   +|++|+  |||     |++ +.|+|  ++|+.+|.++-.+.
T Consensus         8 ~~~l~~~~~~~~~~~-~~~~l~~i~~~lp~I~vvG~~~s--GKS-----SLl-n~l~g~~~lp~~~~~vT~~p~   72 (360)
T 3t34_A            8 VNKIQRACTALGDHG-DSSALPTLWDSLPAIAVVGGQSS--GKS-----SVL-ESIVGKDFLPRGSGIVTRRPL   72 (360)
T ss_dssp             HHHTTTTTTSCSSCC-SSCCC----CCCCEEEEECBTTS--SHH-----HHH-HHHHTSCCSCCCSSSCCCSCE
T ss_pred             HHHHHHHHHhhCccc-cccccccccccCCEEEEECCCCC--cHH-----HHH-HHHhCCCcCCCCCCcccCcce
Confidence            335667777776543 34589999998877   999999  455     555 57788  67888887764443

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=95.81  E-value=0.00035  Score=77.04  Aligned_cols=97  Identities=9%  Similarity=0.031  Sum_probs=65.9

Q ss_pred             hHHHHHHHHHHHHcCCCcccc---cccCcCChHHHHHH----------HHHHHHhCCCC-EEEEECCCCCCCHHHHHHHH
Q psy7365         405 VLLNTIVNESLNKFALGHYSD---REVRTLSGGNKRKL----------STAIALLGNTP-LIFLDEPTSGMDPGARRFLW  470 (601)
Q Consensus       405 ~~~~~~~~~lLe~~~L~~~~~---~~~~~LSgGqkQRl----------~lA~AL~~~P~-lLlLDEPTsGLD~~~~~~i~  470 (601)
                      .+.+++. +++...|+.+..+   +....+|+||+|+.          .+++++...|. ++++||++.-+|.. ...+.
T Consensus       241 ~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~  318 (512)
T 2ius_A          241 NEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVE  318 (512)
T ss_dssp             HHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHH
T ss_pred             HHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHH
Confidence            3445553 6788888865433   23346899998753          34556677898 89999999988833 34555


Q ss_pred             HHHHHHHh----CCcEEEEEccChh-------HHHhhCCEEEEE
Q psy7365         471 TCIERAVS----EGRCVILTSHNME-------ECEALCTKLTIM  503 (601)
Q Consensus       471 ~lL~~l~~----~G~tVllsTHdl~-------e~~~l~drv~iL  503 (601)
                      +.|.++.+    -|.++|++||..+       ....+.+||.+-
T Consensus       319 ~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lr  362 (512)
T 2ius_A          319 ELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFT  362 (512)
T ss_dssp             HHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEEC
T ss_pred             HHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEE
Confidence            66655532    2789999999987       456777888763

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=95.77  E-value=2.2e-05  Score=86.91  Aligned_cols=110  Identities=13%  Similarity=0.156  Sum_probs=71.0

Q ss_pred             CCCCc--ccCCCCCHHHHHHHhHHhc-CCC------hhHHHHHHHHHHHH-cCCCc----ccc---cccCcCChHHHHHH
Q psy7365         377 CPQFD--ALNDRLTPREHLEFYSRVR-NLP------SVLLNTIVNESLNK-FALGH----YSD---REVRTLSGGNKRKL  439 (601)
Q Consensus       377 v~Q~~--~l~~~lTv~E~L~~~~~~~-g~~------~~~~~~~~~~lLe~-~~L~~----~~~---~~~~~LSgGqkQRl  439 (601)
                      +.|+|  .++..++..|.+.++.... |..      .....+.+.++... +++..    ..+   .....+|+||+||+
T Consensus       330 LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~R~  409 (511)
T 2oap_1          330 LRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRLRR  409 (511)
T ss_dssp             GGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEEEE
T ss_pred             hccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCceEE
Confidence            44544  3567788888776655443 421      11222222222211 22221    122   34456899999998


Q ss_pred             HHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEE--EccChhHHHhhCC
Q psy7365         440 STAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL--TSHNMEECEALCT  498 (601)
Q Consensus       440 ~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVll--sTHdl~e~~~l~d  498 (601)
                      +++.          + | |+||||.+++.+++.|.++..+|.|+++  +||++++++..|+
T Consensus       410 ~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g  458 (511)
T 2oap_1          410 TKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG  458 (511)
T ss_dssp             EEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred             EEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence            7652          1 7 9999999998888888888777899985  9999999999885

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=95.64  E-value=0.0098  Score=68.86  Aligned_cols=51  Identities=16%  Similarity=0.136  Sum_probs=36.0

Q ss_pred             CcEEEEecCCC-CCCHHHHHHHHHHHHHHhhhccccCCcEEEEE-ecchhHHHhcCCE
Q psy7365         278 ASTVILDEPTS-GVDPYSRRSIWELLIKVYYASHSLSGRTVILT-THYMDEADLLGDR  333 (601)
Q Consensus       278 ~~~liLDEPts-gLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~-tHdl~~~~~l~Dr  333 (601)
                      ++++|+|||.. +||......+++.+.+.     ....++++++ ||+.+.+..+.+.
T Consensus       209 ~~~lIlDEah~R~ld~d~~~~~l~~l~~~-----~~~~~iIl~SAT~~~~~l~~~~~~  261 (773)
T 2xau_A          209 YSCIILDEAHERTLATDILMGLLKQVVKR-----RPDLKIIIMSATLDAEKFQRYFND  261 (773)
T ss_dssp             EEEEEECSGGGCCHHHHHHHHHHHHHHHH-----CTTCEEEEEESCSCCHHHHHHTTS
T ss_pred             CCEEEecCccccccchHHHHHHHHHHHHh-----CCCceEEEEeccccHHHHHHHhcC
Confidence            58999999996 99987665555555443     2245677775 9998877666653

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=95.59  E-value=0.00091  Score=66.69  Aligned_cols=54  Identities=26%  Similarity=0.223  Sum_probs=41.6

Q ss_pred             eecccCCCCCCCccccchhhhHHHhcc---CCCCCCeeEEE--------EccccCCC--chHHhcccEEEEccCC
Q psy7365          76 EQPLGPSGITLGLHTLGLEFVSRSMLM---GMLPVSSGTAK--------IYDHDIRT--DMTTIRRSLGVCPQYN  137 (601)
Q Consensus        76 ~~~~g~~g~~~g~~~~g~~~~~~~~l~---Gl~~~~~G~v~--------~~g~~~~~--~~~~~~~~ig~v~Q~~  137 (601)
                      +.-.|||||  ||||     ++ ++|+   |+..+++|.+.        .+|.++..  ....+++.+|++||.+
T Consensus        30 I~I~G~~Gs--GKST-----l~-k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   96 (252)
T 4e22_A           30 ITVDGPSGA--GKGT-----LC-KALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ   96 (252)
T ss_dssp             EEEECCTTS--SHHH-----HH-HHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred             EEEECCCCC--CHHH-----HH-HHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence            334899999  4554     44 5888   99999999999        88988743  3455677899999864

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.54  E-value=0.0049  Score=63.19  Aligned_cols=69  Identities=14%  Similarity=0.254  Sum_probs=49.2

Q ss_pred             HHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH---hCCcEEEE-EccChhHHHhhCCEEEEEeCCEEEE
Q psy7365         438 KLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAV---SEGRCVIL-TSHNMEECEALCTKLTIMVNGQFTC  510 (601)
Q Consensus       438 Rl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~---~~G~tVll-sTHdl~e~~~l~drv~iL~~G~iv~  510 (601)
                      +.+++  .+.+|+++|+|  |+|+|+..+..++++.+-+.   ..+.++++ +||..+++.++|+++..+..+.++.
T Consensus       174 ~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl  246 (296)
T 2px0_A          174 QQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF  246 (296)
T ss_dssp             HHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred             HHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence            44555  45999999999  99999987766666554432   12334555 4999999999999876666666654

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=95.51  E-value=0.00032  Score=73.32  Aligned_cols=52  Identities=21%  Similarity=0.339  Sum_probs=43.7

Q ss_pred             cccc-ccCcCChHHHHHHHHHHHHhC------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Q psy7365         423 YSDR-EVRTLSGGNKRKLSTAIALLG------NTPLIFLDEPTSGMDPGARRFLWTCIERAVS  478 (601)
Q Consensus       423 ~~~~-~~~~LSgGqkQRl~lA~AL~~------~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~  478 (601)
                      ..|. ....+|+|++|++..+++++.      +|++++    ||++|+.+..++++.|.++..
T Consensus       202 K~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          202 KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred             chhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence            3453 346789999999999999987      688887    999999999999999988654

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.47  E-value=0.00066  Score=70.53  Aligned_cols=104  Identities=14%  Similarity=0.071  Sum_probs=68.2

Q ss_pred             cccccCCCCcccCCCCCHHHHHHHhHHhcCCC----hhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhC
Q psy7365         372 SYIGYCPQFDALNDRLTPREHLEFYSRVRNLP----SVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG  447 (601)
Q Consensus       372 ~~ig~v~Q~~~l~~~lTv~E~L~~~~~~~g~~----~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~  447 (601)
                      ..|+|++|...+.+  ++.|++......++..    .....+.+...++.+++.. ..+++..||+|++||+.++     
T Consensus       103 ~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l~-----  174 (334)
T 1in4_A          103 GDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFGII-----  174 (334)
T ss_dssp             TCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGGGSCHHHHTTCSEE-----
T ss_pred             CCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcCce-----
Confidence            45888888776654  6778775433322221    1122334556677777755 6778899999999998655     


Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCE
Q psy7365         448 NTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTK  499 (601)
Q Consensus       448 ~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~dr  499 (601)
                                 .+|||.+..++.++|++.++. |     ++|+.+.+..+|++
T Consensus       175 -----------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~~  211 (334)
T 1in4_A          175 -----------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAKR  211 (334)
T ss_dssp             -----------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHT
T ss_pred             -----------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHh
Confidence                       788898999999999887643 4     36898888888875

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.10  E-value=0.0025  Score=69.87  Aligned_cols=148  Identities=10%  Similarity=0.026  Sum_probs=83.4

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCCc---------ccccccccCCCCcccCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKSA---------PQKSYIGYCPQFDALND  385 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~~---------~~~~~ig~v~Q~~~l~~  385 (601)
                      +++++...-+..+++++...   +|++++++       ...++..+.+.+....         ..+++++|++|+..+++
T Consensus       284 ~~Isl~i~~GeVI~LVGpNG---SGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p  360 (503)
T 2yhs_A          284 EPLNVEGKAPFVILMVGVNG---VGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS  360 (503)
T ss_dssp             CCCCCCSCTTEEEEEECCTT---SSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred             CCceeeccCCeEEEEECCCc---ccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence            45555455667777886422   45554432       2223333333443221         12567999999988888


Q ss_pred             CCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHh-CCCC-EEEEECCCCCCCH
Q psy7365         386 RLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL-GNTP-LIFLDEPTSGMDP  463 (601)
Q Consensus       386 ~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~-~~P~-lLlLDEPTsGLD~  463 (601)
                      .+++++++.+... .+...        -+++..|..+.......+|    +|++.+++++. ..|. +||...||+|.|.
T Consensus       361 ~~tV~e~l~~a~~-~~~Dv--------VLIDTaGrl~~~~~lm~EL----~kiv~iar~l~~~~P~evLLvLDattGq~a  427 (503)
T 2yhs_A          361 ASVIFDAIQAAKA-RNIDV--------LIADTAGRLQNKSHLMEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNA  427 (503)
T ss_dssp             HHHHHHHHHHHHH-TTCSE--------EEECCCCSCCCHHHHHHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHH
T ss_pred             HHHHHHHHHHHHh-cCCCE--------EEEeCCCccchhhhHHHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHH
Confidence            8899999987543 22210        0223333322222222233    47888888763 4573 5555559998665


Q ss_pred             HHHHHHHHHHHHHHh-CCcEEEEEccChhH
Q psy7365         464 GARRFLWTCIERAVS-EGRCVILTSHNMEE  492 (601)
Q Consensus       464 ~~~~~i~~lL~~l~~-~G~tVllsTHdl~e  492 (601)
                      .      +.++.+.+ -|.|.+++|| ++.
T Consensus       428 l------~~ak~f~~~~~itgvIlTK-LD~  450 (503)
T 2yhs_A          428 V------SQAKLFHEAVGLTGITLTK-LDG  450 (503)
T ss_dssp             H------HHHHHHHHHTCCSEEEEEC-GGG
T ss_pred             H------HHHHHHHhhcCCCEEEEEc-CCC
Confidence            4      33444543 3889999999 555

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=94.97  E-value=0.00048  Score=73.25  Aligned_cols=122  Identities=13%  Similarity=0.126  Sum_probs=67.2

Q ss_pred             cceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCC-
Q psy7365          66 SYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA-  138 (601)
Q Consensus        66 ~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~-  138 (601)
                      ..+++++|+.+.+      .||||+  |||||     + ++|+|.   .+|.+....  ....  ....++|++||.+. 
T Consensus       156 ~~~l~~~~~~i~~~~~i~l~G~~Gs--GKSTl-----~-~~l~~~---~~g~~~~~~--~~~~--~~~~~lg~~~q~~~~  220 (377)
T 1svm_A          156 YDFLKCMVYNIPKKRYWLFKGPIDS--GKTTL-----A-AALLEL---CGGKALNVN--LPLD--RLNFELGVAIDQFLV  220 (377)
T ss_dssp             HHHHHHHHHCCTTCCEEEEECSTTS--SHHHH-----H-HHHHHH---HCCEEECCS--SCTT--THHHHHGGGTTCSCE
T ss_pred             HHHHHhcccccCCCCEEEEECCCCC--CHHHH-----H-HHHHhh---cCCcEEEEe--ccch--hHHHHHHHhcchhHH
Confidence            3578888888876      999999  56554     4 577774   467776511  1111  11224778888764 


Q ss_pred             CCCCCCHHHHHHHhHhhcCCCh-HH--HHHHHHHHHHH---cCCC-------------cccCCccccCChHHHhhhhchh
Q psy7365         139 LFDKLTVEEHMWFYSQLKQVPK-DL--AQLEISNMIGD---LGIP-------------HKRTSLANTLSGGMQRKLDNVK  199 (601)
Q Consensus       139 ~~~~~tv~e~l~~~~~~~~~~~-~~--~~~~~~~~l~~---~gl~-------------~~~~~~~~~LSgG~~qr~~~~~  199 (601)
                      ++.+.+...++     ..+... ..  ....+.+.++.   +.+.             ...+.....+++|++||+..++
T Consensus       221 l~dd~~~~~~~-----~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~  295 (377)
T 1svm_A          221 VFEDVKGTGGE-----SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQI  295 (377)
T ss_dssp             EETTCCCSTTT-----TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEE
T ss_pred             HHHHHHHHHHH-----HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhh
Confidence            34444332221     111110 00  01223334431   1111             2345677889999999998776


Q ss_pred             hhcchhhH
Q psy7365         200 VWFNNKAW  207 (601)
Q Consensus       200 ~~~~~~~~  207 (601)
                      ++...|..
T Consensus       296 ~l~~~pDL  303 (377)
T 1svm_A          296 DFRPKDYL  303 (377)
T ss_dssp             ECCCCHHH
T ss_pred             ccCCCCCe
Confidence            66666654

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=94.90  E-value=0.0016  Score=65.34  Aligned_cols=47  Identities=21%  Similarity=0.212  Sum_probs=24.3

Q ss_pred             hhhhhccc-ccccccCCCccceeecceEEeec---------ccCCCCCCCccccchhhhHHHhccCCC
Q psy7365          48 YVSLFESL-SENRDKLGIDSYGISDTSLEEQP---------LGPSGITLGLHTLGLEFVSRSMLMGML  105 (601)
Q Consensus        48 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------~g~~g~~~g~~~~g~~~~~~~~l~Gl~  105 (601)
                      ++..+++| ++.|+   .+..+|+|+||++.+         +|||||  ||||+     + ++|++.+
T Consensus        16 ~~l~~~~~~~~~~~---~~~~~l~~~~~~i~~~l~g~~i~l~G~~Gs--GKSTl-----~-~~La~~l   72 (250)
T 3nwj_A           16 ALLETGSLLHSPFD---EEQQILKKKAEEVKPYLNGRSMYLVGMMGS--GKTTV-----G-KIMARSL   72 (250)
T ss_dssp             -------------------CHHHHHHHHTTHHHHTTCCEEEECSTTS--CHHHH-----H-HHHHHHH
T ss_pred             CceEEcceeeEEec---CcchhhhhhhhhhhhhcCCCEEEEECCCCC--CHHHH-----H-HHHHHhc
Confidence            35678999 99982   345799999999874         899999  56554     4 4676644

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=94.82  E-value=0.0028  Score=59.09  Aligned_cols=113  Identities=14%  Similarity=0.127  Sum_probs=60.2

Q ss_pred             ecceEEeec-----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccc--c-CCCch----HHhcccEEEEccCC
Q psy7365          70 SDTSLEEQP-----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDH--D-IRTDM----TTIRRSLGVCPQYN  137 (601)
Q Consensus        70 ~~~~~~~~~-----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~--~-~~~~~----~~~~~~ig~v~Q~~  137 (601)
                      +++++++.+     +|||||  ||||+      .++|.+++.+++|...-.+.  + +....    ...+..|.++||++
T Consensus        18 ~~~~~~~~~g~~~i~G~NGs--GKStl------l~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~   89 (182)
T 3kta_A           18 KKVVIPFSKGFTAIVGANGS--GKSNI------GDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE   89 (182)
T ss_dssp             SCEEEECCSSEEEEEECTTS--SHHHH------HHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred             ccEEEecCCCcEEEECCCCC--CHHHH------HHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence            567777766     999999  56554      46888888877665322221  1 11110    01345799999987


Q ss_pred             CC-CC----CCCHHHHHHH-hH---hhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhh
Q psy7365         138 AL-FD----KLTVEEHMWF-YS---QLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL  195 (601)
Q Consensus       138 ~~-~~----~~tv~e~l~~-~~---~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~  195 (601)
                      .- ++    .+++...+.- +.   ..-+.+  ....++.++++.+++....   ..-++.|+.+++
T Consensus        90 ~~~~~~~~~~~~i~r~~~~~~~~~~~i~g~~--~~~~~~~~~l~~~~l~~~~---~~~~~qg~~~~l  151 (182)
T 3kta_A           90 DRGFPIDEDEVVIRRRVYPDGRSSYWLNGRR--ATRSEILDILTAAMISPDG---YNIVLQGDITKF  151 (182)
T ss_dssp             TCCSSSSSSEEEEEEEECTTSCEEEEETTEE--ECHHHHHHHHHHTTCCTTC---TTEECTTCTTHH
T ss_pred             CcccccCCcEEEEEEEEEeCCcEEEEECCeE--cCHHHHHHHHHHcCCCCCC---CEEEEcccHHHH
Confidence            42 21    1222211100 00   011111  1235677888999987532   234677777765

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=94.81  E-value=0.00072  Score=64.60  Aligned_cols=33  Identities=30%  Similarity=0.398  Sum_probs=25.6

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCCCeeEE--EEccccCC
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTA--KIYDHDIR  120 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v--~~~g~~~~  120 (601)
                      +|||||  ||||     ++ ++|++.++ ..|.+  .++|.++.
T Consensus        31 ~G~sGs--GKST-----l~-~~La~~l~-~~G~~~~~~d~d~~~   65 (200)
T 3uie_A           31 TGLSGS--GKST-----LA-CALNQMLY-QKGKLCYILDGDNVR   65 (200)
T ss_dssp             ECSTTS--SHHH-----HH-HHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred             ECCCCC--CHHH-----HH-HHHHHHHH-hcCceEEEecCchhh
Confidence            899999  4555     44 58899887 77888  88887663

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=94.73  E-value=0.0032  Score=59.58  Aligned_cols=49  Identities=18%  Similarity=0.150  Sum_probs=28.6

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCCCee-EEEEccccCCCchHHhcccEEEEccCCC
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSG-TAKIYDHDIRTDMTTIRRSLGVCPQYNA  138 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G-~v~~~g~~~~~~~~~~~~~ig~v~Q~~~  138 (601)
                      +|||||  ||||     ++ ++|+|.+.|+.| .+..   ....+......+++++||++.
T Consensus        12 ~G~~Gs--GKST-----l~-~~L~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~   61 (207)
T 2j41_A           12 SGPSGV--GKGT-----VR-KRIFEDPSTSYKYSISM---TTRQMREGEVDGVDYFFKTRD   61 (207)
T ss_dssp             ECSTTS--CHHH-----HH-HHHHHCTTCCEECCCCE---ECSCCCTTCCBTTTBEECCHH
T ss_pred             ECCCCC--CHHH-----HH-HHHHHhhCCCeEEeccc---ccCCCCCCccCCCceEEcCHH
Confidence            899999  4554     44 689999977766 3322   221111111234778887653

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=94.70  E-value=0.018  Score=59.78  Aligned_cols=50  Identities=12%  Similarity=0.009  Sum_probs=34.4

Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhc
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLL  330 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l  330 (601)
                      |.++++||+... |+.....+...+.+....  ...+.++|+++|+.+....+
T Consensus       126 ~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~--~~~~~~iI~~~~~~~~~~~l  175 (389)
T 1fnn_A          126 YMFLVLDDAFNL-APDILSTFIRLGQEADKL--GAFRIALVIVGHNDAVLNNL  175 (389)
T ss_dssp             CEEEEEETGGGS-CHHHHHHHHHHTTCHHHH--SSCCEEEEEEESSTHHHHTS
T ss_pred             eEEEEEECcccc-chHHHHHHHHHHHhCCCC--CcCCEEEEEEECCchHHHHh
Confidence            579999999875 887777777766543100  01477899999998755444

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=94.65  E-value=0.00074  Score=62.70  Aligned_cols=47  Identities=17%  Similarity=0.096  Sum_probs=28.6

Q ss_pred             cccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccC
Q psy7365          78 PLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQY  136 (601)
Q Consensus        78 ~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~  136 (601)
                      -+|||||  ||||+     + ++|++.+    |.+.+++.++.......+...|+.+|+
T Consensus        13 l~G~~Gs--GKSTl-----~-~~l~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~   59 (175)
T 1knq_A           13 LMGVSGS--GKSAV-----A-SEVAHQL----HAAFLDGDFLHPRRNIEKMASGEPLND   59 (175)
T ss_dssp             EECSTTS--CHHHH-----H-HHHHHHH----TCEEEEGGGGCCHHHHHHHHTTCCCCH
T ss_pred             EEcCCCC--CHHHH-----H-HHHHHhh----CcEEEeCccccchHHHHHhhcCcCCCc
Confidence            3899999  56554     4 4677654    788999887754211111134555554

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=94.53  E-value=0.0074  Score=68.68  Aligned_cols=40  Identities=20%  Similarity=0.380  Sum_probs=29.6

Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHH
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA  327 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~  327 (601)
                      +-++++| |+.|+++.++. ++..+.+        .|.++|++.|.++..
T Consensus       100 ~~ilVvD-~~~g~~~qt~~-~~~~~~~--------~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A          100 AALVAVS-AEAGVQVGTER-AWTVAER--------LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             EEEEEEE-TTTCSCHHHHH-HHHHHHH--------TTCCEEEEEECGGGC
T ss_pred             cEEEEEc-CCcccchhHHH-HHHHHHH--------ccCCEEEEecCCchh
Confidence            3578889 99999988774 4444443        378888899998764

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=94.39  E-value=0.011  Score=64.74  Aligned_cols=49  Identities=22%  Similarity=0.212  Sum_probs=30.9

Q ss_pred             CcEEEEecC----------CCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHH
Q psy7365         278 ASTVILDEP----------TSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA  327 (601)
Q Consensus       278 ~~~liLDEP----------tsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~  327 (601)
                      |.+|++||+          ++|.|+...+.+.+++..+... ....+..||.+||+.+.+
T Consensus       109 p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~-~~~~~viVIaaTn~~~~L  167 (476)
T 2ce7_A          109 PCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGF-DSKEGIIVMAATNRPDIL  167 (476)
T ss_dssp             SEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHS-CGGGTEEEEEEESCGGGS
T ss_pred             CCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhcc-CCCCCEEEEEecCChhhh
Confidence            689999999          3467777777677777665211 123477889999997654

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.35  E-value=0.0001  Score=76.59  Aligned_cols=40  Identities=20%  Similarity=0.323  Sum_probs=30.2

Q ss_pred             CCChHHHHHHHHHHH--HHcCCCcccCCccccCChHHHhhhh
Q psy7365         157 QVPKDLAQLEISNMI--GDLGIPHKRTSLANTLSGGMQRKLD  196 (601)
Q Consensus       157 ~~~~~~~~~~~~~~l--~~~gl~~~~~~~~~~LSgG~~qr~~  196 (601)
                      ..+.++...++.+.+  +.+++++...+.+.++|||+.|++.
T Consensus       168 ~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~  209 (340)
T 1sxj_C          168 PLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVL  209 (340)
T ss_dssp             CCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence            355667777787777  4556777777888999999999963

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=94.04  E-value=0.062  Score=58.77  Aligned_cols=46  Identities=13%  Similarity=0.085  Sum_probs=40.4

Q ss_pred             ceeecceEEeec-----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCC
Q psy7365          67 YGISDTSLEEQP-----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIR  120 (601)
Q Consensus        67 ~~~~~~~~~~~~-----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~  120 (601)
                      .+++|+||++.+     +|||||  |||||      .++|+|+++|++|+|.++|.++.
T Consensus        18 ~~l~~vsl~i~~e~~~liG~nGs--GKSTL------l~~l~Gl~~p~~G~I~~~g~~~~   68 (483)
T 3euj_A           18 NGFFARTFDFDELVTTLSGGNGA--GKSTT------MAGFVTALIPDLTLLNFRNTTEA   68 (483)
T ss_dssp             TTEEEEEEECCSSEEEEECCTTS--SHHHH------HHHHHHHHCCCTTTCCCCCTTSC
T ss_pred             ccccceEEEEccceEEEECCCCC--cHHHH------HHHHhcCCCCCCCEEEECCEEcc
Confidence            489999999976     999999  56654      57999999999999999999875

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=94.03  E-value=0.00048  Score=76.80  Aligned_cols=83  Identities=18%  Similarity=0.187  Sum_probs=48.3

Q ss_pred             ecccCCCCCCCccccchhhhHHHhccCCCCCCee-EEE-EccccCCC-----------chHHhcccEEEEccCCCCCCCC
Q psy7365          77 QPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSG-TAK-IYDHDIRT-----------DMTTIRRSLGVCPQYNALFDKL  143 (601)
Q Consensus        77 ~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G-~v~-~~g~~~~~-----------~~~~~~~~ig~v~Q~~~~~~~~  143 (601)
                      .-+|||||  |||     |++ ++|+|.+.|++| ++. ++|.++..           ......+.+++++|+.      
T Consensus       373 ~LiG~sGS--GKS-----TLa-r~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l------  438 (552)
T 3cr8_A          373 FFTGLSGA--GKS-----TLA-RALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI------  438 (552)
T ss_dssp             EEEESSCH--HHH-----HHH-HHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH------
T ss_pred             EEECCCCC--hHH-----HHH-HHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH------
Confidence            33999999  455     444 599999999987 785 88876521           0011223456666642      


Q ss_pred             CHHHHHHHhHhhcCCChHHHHHHHHHHHHHcC
Q psy7365         144 TVEEHMWFYSQLKQVPKDLAQLEISNMIGDLG  175 (601)
Q Consensus       144 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g  175 (601)
                      ++.+++.+..  .+.+....++++.++++.+|
T Consensus       439 ~~~~~ivi~~--~~~~~~~~r~~~r~lL~~~g  468 (552)
T 3cr8_A          439 TKNRGIAICA--PIAPYRQTRRDVRAMIEAVG  468 (552)
T ss_dssp             HHTTCEEEEC--CCCCCHHHHHHHHHHHHTTS
T ss_pred             HhcCCEEEEe--cCCccHHHHHHHHHHHHHcC
Confidence            2222222111  11233455667888899888

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=94.02  E-value=0.048  Score=57.31  Aligned_cols=59  Identities=19%  Similarity=0.119  Sum_probs=32.1

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCCCeeEE-EEccccCCCchHHhcccEEEEccCCCCCCCCCHHH
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTA-KIYDHDIRTDMTTIRRSLGVCPQYNALFDKLTVEE  147 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v-~~~g~~~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e  147 (601)
                      .||+|+  |||||     +. .+++...+..|.| ++++.......  ..+++|+.+|+..+....++.+
T Consensus        67 ~GppGs--GKSTL-----al-~la~~~~~~gg~VlyId~E~s~~~~--ra~rlgv~~~~l~i~~~~~~e~  126 (356)
T 3hr8_A           67 FGQESS--GKTTL-----AL-HAIAEAQKMGGVAAFIDAEHALDPV--YAKNLGVDLKSLLISQPDHGEQ  126 (356)
T ss_dssp             EESTTS--SHHHH-----HH-HHHHHHHHTTCCEEEEESSCCCCHH--HHHHHTCCGGGCEEECCSSHHH
T ss_pred             ECCCCC--CHHHH-----HH-HHHHHHHhcCCeEEEEecccccchH--HHHHcCCchhhhhhhhccCHHH
Confidence            799999  56554     54 4455555566765 55555432221  3345666666654443444443

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=93.86  E-value=0.0093  Score=56.71  Aligned_cols=27  Identities=22%  Similarity=0.260  Sum_probs=9.4

Q ss_pred             CCccceeecceEEeec------ccCCCCCCCcccc
Q psy7365          63 GIDSYGISDTSLEEQP------LGPSGITLGLHTL   91 (601)
Q Consensus        63 ~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~   91 (601)
                      +...++++|+||++.+      +||+||  ||||+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~i~l~G~~Gs--GKsTl   41 (199)
T 3vaa_A            9 SGVDLGTENLYFQSNAMVRIFLTGYMGA--GKTTL   41 (199)
T ss_dssp             ---------------CCCEEEEECCTTS--CHHHH
T ss_pred             CCCCCCCCceeEecCCCCEEEEEcCCCC--CHHHH
Confidence            3456789999999876      899999  56655

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=93.64  E-value=0.073  Score=55.50  Aligned_cols=72  Identities=15%  Similarity=0.203  Sum_probs=55.4

Q ss_pred             CcccccccCcCChHHHHHHHHHHHHhCCCCEEEEE-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEc--cChhHHH
Q psy7365         421 GHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLD-EPTSGMDPGARRFLWTCIERAVSEGRCVILTS--HNMEECE  494 (601)
Q Consensus       421 ~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLD-EPTsGLD~~~~~~i~~lL~~l~~~G~tVllsT--Hdl~e~~  494 (601)
                      ....+.++..+|+|++|++. +.+...++-++++| +|+.|+|......+++.+.+... +..++++.  ||+....
T Consensus       222 ~G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~  296 (357)
T 2e87_A          222 PGLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEE  296 (357)
T ss_dssp             TTTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHH
T ss_pred             CCccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChH
Confidence            33345567789999998876 55556788899999 99999999998888887776543 67888887  8886443

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=93.48  E-value=0.0022  Score=60.47  Aligned_cols=52  Identities=15%  Similarity=0.104  Sum_probs=36.4

Q ss_pred             cCChHHHHHHHHHHHHhCCCCEE-------EEECCCCC---CCHHHHHHHHHHHHHHHhCCc
Q psy7365         430 TLSGGNKRKLSTAIALLGNTPLI-------FLDEPTSG---MDPGARRFLWTCIERAVSEGR  481 (601)
Q Consensus       430 ~LSgGqkQRl~lA~AL~~~P~lL-------lLDEPTsG---LD~~~~~~i~~lL~~l~~~G~  481 (601)
                      .|||||+||++||||++.+|++.       +=|.|..+   +|......+.++|.+...+|.
T Consensus       103 glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~~~~  164 (171)
T 2f1r_A          103 GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLREGG  164 (171)
T ss_dssp             SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred             CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHhccC
Confidence            49999999999999999999773       22444322   344556778888877666654

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=93.35  E-value=0.087  Score=57.51  Aligned_cols=62  Identities=18%  Similarity=0.157  Sum_probs=46.9

Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEECC----------CCCCCHHHHHHHHHHHHHHH----hCCcEEEEEccChhHHH
Q psy7365         433 GGNKRKLSTAIALLGNTPLIFLDEP----------TSGMDPGARRFLWTCIERAV----SEGRCVILTSHNMEECE  494 (601)
Q Consensus       433 gGqkQRl~lA~AL~~~P~lLlLDEP----------TsGLD~~~~~~i~~lL~~l~----~~G~tVllsTHdl~e~~  494 (601)
                      +++++|-.++.|....|.+||+||+          +.|.|+...+.+.+++..+.    ..+..||.+||..+.+.
T Consensus        93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld  168 (476)
T 2ce7_A           93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD  168 (476)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred             cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence            6778888999999999999999999          45778877777777777763    34678999999986543

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=93.34  E-value=0.068  Score=55.77  Aligned_cols=35  Identities=11%  Similarity=0.045  Sum_probs=21.8

Q ss_pred             cEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccC-CcEEEEEec
Q psy7365         279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLS-GRTVILTTH  322 (601)
Q Consensus       279 ~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~-G~TVI~~tH  322 (601)
                      +++|.|+|...++     .+...+++++.    .. |..+|++.|
T Consensus       129 ~l~I~d~~~~si~-----~i~~~ir~l~~----~~gg~~lIVIDy  164 (338)
T 4a1f_A          129 KLFFYDKSYVRIE-----QIRLQLRKLKS----QHKELGIAFIDY  164 (338)
T ss_dssp             CEEEECCTTCCHH-----HHHHHHHHHHH----HCTTEEEEEEEE
T ss_pred             CeEEeCCCCCcHH-----HHHHHHHHHHH----hcCCCCEEEEec
Confidence            6999999875433     45555555532    23 678877654

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=92.08  E-value=0.0047  Score=64.18  Aligned_cols=32  Identities=16%  Similarity=0.230  Sum_probs=21.3

Q ss_pred             ecccCCCCCCCccccchhhhHHHhccCCCC--CCeeEEEEcc
Q psy7365          77 QPLGPSGITLGLHTLGLEFVSRSMLMGMLP--VSSGTAKIYD  116 (601)
Q Consensus        77 ~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~--~~~G~v~~~g  116 (601)
                      .-.|||||  |||     |++ ++|+|++.  |++|.|.+-+
T Consensus        96 gI~GpsGS--GKS-----Tl~-~~L~~ll~~~~~~~~v~~i~  129 (321)
T 3tqc_A           96 GIAGSVAV--GKS-----TTS-RVLKALLSRWPDHPNVEVIT  129 (321)
T ss_dssp             EEECCTTS--SHH-----HHH-HHHHHHHTTSTTCCCEEEEE
T ss_pred             EEECCCCC--CHH-----HHH-HHHHHHhcccCCCCeEEEEe
Confidence            33999999  455     455 58889887  4566654433

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=91.95  E-value=0.13  Score=52.74  Aligned_cols=57  Identities=12%  Similarity=0.158  Sum_probs=41.4

Q ss_pred             HHHHHHcCCCcccccccCcCChHHHHHH---HHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q psy7365         412 NESLNKFALGHYSDREVRTLSGGNKRKL---STAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERA  476 (601)
Q Consensus       412 ~~lLe~~~L~~~~~~~~~~LSgGqkQRl---~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l  476 (601)
                      ..+++.+++.-     +..+|+|+.+++   ++++++..+|+++|+|||..   ......+++.++++
T Consensus       152 ~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l  211 (306)
T 1vma_A          152 KIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKV  211 (306)
T ss_dssp             HHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHH
T ss_pred             HHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHH
Confidence            34556666642     336789999999   89999999999999999974   33445555555554

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=91.27  E-value=0.024  Score=53.07  Aligned_cols=30  Identities=20%  Similarity=0.297  Sum_probs=21.2

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCC-CeeEEEEcc
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPV-SSGTAKIYD  116 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~-~~G~v~~~g  116 (601)
                      +|||||  |||||      .++|+|.+++ ..|.|....
T Consensus        11 ~GpsGs--GKSTL------~~~L~~~~~~~~~~~i~~tt   41 (180)
T 1kgd_A           11 LGAHGV--GRRHI------KNTLITKHPDRFAYPIPHTT   41 (180)
T ss_dssp             ECCTTS--SHHHH------HHHHHHHCTTTEECCCCEEC
T ss_pred             ECCCCC--CHHHH------HHHHHhhCCccEEEeeeccC
Confidence            899999  56554      4688888874 567665543

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=91.12  E-value=0.0083  Score=66.60  Aligned_cols=62  Identities=13%  Similarity=0.114  Sum_probs=32.0

Q ss_pred             eeecceEEeec-----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-chHHhcccEEEEccCC
Q psy7365          68 GISDTSLEEQP-----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DMTTIRRSLGVCPQYN  137 (601)
Q Consensus        68 ~~~~~~~~~~~-----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~~~~~~~ig~v~Q~~  137 (601)
                      ++.++++++..     +||||+  ||||     +. ++|++.+.+..|.|.+.|..... .....+..+|+++|..
T Consensus        98 ~l~~~~~~~~g~~vll~Gp~Gt--GKTt-----la-r~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~  165 (543)
T 3m6a_A           98 AVQKLTKSLKGPILCLAGPPGV--GKTS-----LA-KSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRI  165 (543)
T ss_dssp             HHHHHSSSCCSCEEEEESSSSS--SHHH-----HH-HHHHHHHTCEEEEECCCC--------------------CH
T ss_pred             HHHHhcccCCCCEEEEECCCCC--CHHH-----HH-HHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHH
Confidence            56666665533     899999  4554     44 68999999999999888754321 1122345677777653

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=91.10  E-value=0.019  Score=54.66  Aligned_cols=35  Identities=20%  Similarity=0.106  Sum_probs=27.1

Q ss_pred             ecccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccC
Q psy7365          77 QPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI  119 (601)
Q Consensus        77 ~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~  119 (601)
                      .-+|||||  ||||     ++ ++|++.+++..|.|.+.+.+.
T Consensus        26 ~i~G~~Gs--GKst-----l~-~~l~~~~~~~~~~v~~~~~d~   60 (201)
T 1rz3_A           26 GIDGLSRS--GKTT-----LA-NQLSQTLREQGISVCVFHMDD   60 (201)
T ss_dssp             EEEECTTS--SHHH-----HH-HHHHHHHHHTTCCEEEEEGGG
T ss_pred             EEECCCCC--CHHH-----HH-HHHHHHHhhcCCeEEEeccCc
Confidence            33899999  4554     44 588999988899998887665

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=90.86  E-value=0.29  Score=49.80  Aligned_cols=42  Identities=21%  Similarity=0.087  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHhCCCCEEEEECC-CCCCCHHHHHHHHHHHHHH
Q psy7365         435 NKRKLSTAIALLGNTPLIFLDEP-TSGMDPGARRFLWTCIERA  476 (601)
Q Consensus       435 qkQRl~lA~AL~~~P~lLlLDEP-TsGLD~~~~~~i~~lL~~l  476 (601)
                      +.+|.+++.+...+++++|+||| +.|+|.....++.++.+.+
T Consensus       167 ~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~  209 (295)
T 1ls1_A          167 SIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL  209 (295)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence            44688999988899999999999 9999999999998887765

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=90.81  E-value=0.0098  Score=57.25  Aligned_cols=54  Identities=24%  Similarity=0.240  Sum_probs=36.7

Q ss_pred             eecccCCCCCCCccccchhhhHHHhccCCC---CCCeeEEEE--------ccccCCC--chHHhcccEEEEccCC
Q psy7365          76 EQPLGPSGITLGLHTLGLEFVSRSMLMGML---PVSSGTAKI--------YDHDIRT--DMTTIRRSLGVCPQYN  137 (601)
Q Consensus        76 ~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~---~~~~G~v~~--------~g~~~~~--~~~~~~~~ig~v~Q~~  137 (601)
                      +.-+|||||  ||||+     + ++|++.+   .+++|.+..        .|.++..  ....+++.+|++||++
T Consensus         8 i~i~G~~Gs--GKSTl-----~-~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   74 (227)
T 1cke_A            8 ITIDGPSGA--GKGTL-----C-KAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST   74 (227)
T ss_dssp             EEEECCTTS--SHHHH-----H-HHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred             EEEECCCCC--CHHHH-----H-HHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence            444899999  55554     4 4666544   788999887        6776643  2334567789999875

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=90.11  E-value=0.23  Score=51.68  Aligned_cols=54  Identities=13%  Similarity=0.145  Sum_probs=43.1

Q ss_pred             CcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-CcEEEEEc
Q psy7365         429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVS-E-GRCVILTS  487 (601)
Q Consensus       429 ~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~-~-G~tVllsT  487 (601)
                      +.||.++.+|+..|...+.+++++|.|+|...     ..++...++++.+ . |..+|++-
T Consensus       108 g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVID  163 (338)
T 4a1f_A          108 GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFID  163 (338)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEEe
Confidence            47999999999999999999999999998654     3366666666654 4 67888873

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=89.96  E-value=0.51  Score=50.78  Aligned_cols=33  Identities=15%  Similarity=0.152  Sum_probs=23.9

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccC
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI  119 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~  119 (601)
                      +||+|+       ||||++. .|++.+.+..++|.+-+.|+
T Consensus       103 vG~~Gs-------GKTTt~~-kLA~~l~~~G~kVllv~~D~  135 (433)
T 3kl4_A          103 VGVQGS-------GKTTTAG-KLAYFYKKRGYKVGLVAADV  135 (433)
T ss_dssp             CCCTTS-------CHHHHHH-HHHHHHHHTTCCEEEEEECC
T ss_pred             ECCCCC-------CHHHHHH-HHHHHHHHcCCeEEEEecCc
Confidence            899999       5555665 56677778888887766554

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=89.85  E-value=0.055  Score=56.81  Aligned_cols=91  Identities=18%  Similarity=0.054  Sum_probs=62.3

Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEE-
Q psy7365         432 SGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTC-  510 (601)
Q Consensus       432 SgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~-  510 (601)
                      +++..++-.|+.++..+|+.+++|||+.       .+++++|+.+.....|++.++|..+ +...|||+..+..|.... 
T Consensus       236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~~~~~  307 (361)
T 2gza_A          236 NAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGS-CELTFERLALMVLQNRQGR  307 (361)
T ss_dssp             ---CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTSTTGG
T ss_pred             ccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhcccccc
Confidence            3455688899999999999999999986       3567778777544457899999965 888999999998764321 


Q ss_pred             ecCHHHHHHHhCCceEEEEE
Q psy7365         511 LGSATHLKSKYGQGYSVKVR  530 (601)
Q Consensus       511 ~G~~~~L~~~~~~~~~l~i~  530 (601)
                      ..+.+.+...+.....+.+.
T Consensus       308 ~~~~~~i~~~l~~~~~~vv~  327 (361)
T 2gza_A          308 QLPYEIIRRLLYLVVDVVVH  327 (361)
T ss_dssp             GSCHHHHHHHHHHHCCEEEE
T ss_pred             CCCHHHHHHHHHHHcCEEEE
Confidence            23344454444333333333

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=89.75  E-value=0.029  Score=57.74  Aligned_cols=51  Identities=24%  Similarity=0.178  Sum_probs=27.7

Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhc
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLL  330 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l  330 (601)
                      |.++++||+....+......+..++..+..  ....+.++|+++|+.+....+
T Consensus       129 ~~vlilDE~~~l~~~~~~~~l~~l~~~~~~--~~~~~~~~I~~~~~~~~~~~~  179 (386)
T 2qby_A          129 QVVIVLDEIDAFVKKYNDDILYKLSRINSE--VNKSKISFIGITNDVKFVDLL  179 (386)
T ss_dssp             CEEEEEETHHHHHHSSCSTHHHHHHHHHHS--CCC--EEEEEEESCGGGGGGC
T ss_pred             eEEEEEcChhhhhccCcCHHHHHHhhchhh--cCCCeEEEEEEECCCChHhhh
Confidence            579999999865422112233333332210  023467899999988654443

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=89.33  E-value=0.12  Score=55.59  Aligned_cols=70  Identities=14%  Similarity=0.149  Sum_probs=36.1

Q ss_pred             EEeecccCCCCCCCccccchhhhHHHhccCCCC------------CCeeEEEEccccCCC-chHHhcccEEEEccCCCCC
Q psy7365          74 LEEQPLGPSGITLGLHTLGLEFVSRSMLMGMLP------------VSSGTAKIYDHDIRT-DMTTIRRSLGVCPQYNALF  140 (601)
Q Consensus        74 ~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~------------~~~G~v~~~g~~~~~-~~~~~~~~ig~v~Q~~~~~  140 (601)
                      +.+.-+|+||+  ||||     +. +.|+|...            +.+|.+.++|.++.- +....++..++.+|....|
T Consensus       181 ~kvaivG~~gv--GKST-----Ll-n~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~  252 (439)
T 1mky_A          181 IKVAIVGRPNV--GKST-----LF-NAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKY  252 (439)
T ss_dssp             EEEEEECSTTS--SHHH-----HH-HHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCS
T ss_pred             ceEEEECCCCC--CHHH-----HH-HHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHH
Confidence            55666999999  4554     44 56777643            568999999986421 1111233445556666666


Q ss_pred             CCCCHHHHHHH
Q psy7365         141 DKLTVEEHMWF  151 (601)
Q Consensus       141 ~~~tv~e~l~~  151 (601)
                      ..+++.+++..
T Consensus       253 ~~~~~~~~i~~  263 (439)
T 1mky_A          253 SNYRVVDSIEK  263 (439)
T ss_dssp             CCHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            65566555543

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=89.18  E-value=0.07  Score=51.91  Aligned_cols=32  Identities=13%  Similarity=0.055  Sum_probs=24.0

Q ss_pred             eecccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccC
Q psy7365          76 EQPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI  119 (601)
Q Consensus        76 ~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~  119 (601)
                      +.-.|||||  ||||+      .++|+|+    .|+|.+.|.+.
T Consensus        23 i~i~G~~Gs--GKSTl------~~~L~~~----~g~v~~~~~~~   54 (230)
T 2vp4_A           23 VLIEGNIGS--GKTTY------LNHFEKY----KNDICLLTEPV   54 (230)
T ss_dssp             EEEECSTTS--CHHHH------HHTTGGG----TTTEEEECCTH
T ss_pred             EEEECCCCC--CHHHH------HHHHHhc----cCCeEEEecCH
Confidence            344899999  56554      4688887    78899988764

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=89.10  E-value=0.068  Score=57.57  Aligned_cols=44  Identities=11%  Similarity=0.280  Sum_probs=37.6

Q ss_pred             CCCCEEEEECCCCCCCH-HHHHHHHHHHHHHHhCCcEEEEEccCh
Q psy7365         447 GNTPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVILTSHNM  490 (601)
Q Consensus       447 ~~P~lLlLDEPTsGLD~-~~~~~i~~lL~~l~~~G~tVllsTHdl  490 (601)
                      .+|++|++||+..-.+. ..+..++..+..+.+.|+.||++||+.
T Consensus       193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~  237 (440)
T 2z4s_A          193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE  237 (440)
T ss_dssp             TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence            48999999999876654 678889999998888899999999973

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=88.40  E-value=0.069  Score=56.00  Aligned_cols=57  Identities=18%  Similarity=0.146  Sum_probs=31.9

Q ss_pred             chhhhhcccccccccCCCccceeecceEEeecccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEcc
Q psy7365          47 AYVSLFESLSENRDKLGIDSYGISDTSLEEQPLGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYD  116 (601)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g  116 (601)
                      .|+. +.+|++.|+.    ..+.++++|.+.-+|+||+  ||||     ++ +.|.|...+..|.+...+
T Consensus        16 ~~v~-~~~l~~~~~~----k~~~~~~~~~I~vvG~~g~--GKST-----Ll-n~L~~~~~~~~~~~~~~~   72 (361)
T 2qag_A           16 GYVG-FANLPNQVHR----KSVKKGFEFTLMVVGESGL--GKST-----LI-NSLFLTDLYPERVIPGAA   72 (361)
T ss_dssp             ------CCHHHHHHT----HHHHHCCEECEEECCCTTS--CHHH-----HH-HHHTTCCC----------
T ss_pred             ceEE-eccchHHhCC----eeecCCCCEEEEEEcCCCC--CHHH-----HH-HHHhCCCCCCCCcccCCC
Confidence            3444 8889888754    3478999999999999999  4554     44 466666555555554444

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=87.57  E-value=0.37  Score=49.35  Aligned_cols=11  Identities=18%  Similarity=0.114  Sum_probs=9.1

Q ss_pred             cCChHHHhhhh
Q psy7365         186 TLSGGMQRKLD  196 (601)
Q Consensus       186 ~LSgG~~qr~~  196 (601)
                      .||.++++|+.
T Consensus       133 ~l~~~~~~~l~  143 (315)
T 3bh0_A          133 DFASEDWGKLS  143 (315)
T ss_dssp             HHCSSCHHHHH
T ss_pred             CCCHHHHHHHH
Confidence            38999999975

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=87.39  E-value=0.012  Score=63.31  Aligned_cols=72  Identities=11%  Similarity=-0.000  Sum_probs=47.2

Q ss_pred             CCCCccc--CCC----CCHHHHHHHhHHhc----CCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHh
Q psy7365         377 CPQFDAL--NDR----LTPREHLEFYSRVR----NLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL  446 (601)
Q Consensus       377 v~Q~~~l--~~~----lTv~E~L~~~~~~~----g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~  446 (601)
                      ++|++.+  +..    .|+.+++.+...-+    ........+.+ ..|..+++.+.  ..+.+|||||+||  ||++|+
T Consensus       233 Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i-~rL~~lgl~~~--~~~~~LSgg~~QR--LaraL~  307 (418)
T 1p9r_A          233 LRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAV-TRLRDMGIEPF--LISSSLLGVLAQR--LVRTLC  307 (418)
T ss_dssp             GGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHH-HHHHHHTCCHH--HHHHHEEEEEEEE--EEEEEC
T ss_pred             hccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHH-HHHHHcCCcHH--HHHHHHHHHHHHH--hhhhhc
Confidence            4577754  343    58888887643110    01111122223 35677888764  3788999999999  999999


Q ss_pred             CCCCEEE
Q psy7365         447 GNTPLIF  453 (601)
Q Consensus       447 ~~P~lLl  453 (601)
                      .+|++..
T Consensus       308 ~~p~~~~  314 (418)
T 1p9r_A          308 PDCKEPY  314 (418)
T ss_dssp             TTTCEEE
T ss_pred             CCCCccC
Confidence            9999876

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=86.81  E-value=1.2  Score=45.74  Aligned_cols=51  Identities=14%  Similarity=0.037  Sum_probs=40.7

Q ss_pred             hCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCcEEEEEccChhHHHhhC
Q psy7365         446 LGNTPLIFLDEPTSGMDPGARRFLWTCIERAVS---EGRCVILTSHNMEECEALC  497 (601)
Q Consensus       446 ~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~---~G~tVllsTHdl~e~~~l~  497 (601)
                      ..+|.+|++||+... |+.....+.+++.++..   .+.++|++||+.+....+.
T Consensus       123 ~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~  176 (389)
T 1fnn_A          123 RDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD  176 (389)
T ss_dssp             TTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred             cCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence            356889999999876 98888888888876655   5789999999987655543

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=86.78  E-value=0.12  Score=53.28  Aligned_cols=48  Identities=19%  Similarity=0.221  Sum_probs=27.5

Q ss_pred             CCcEEEEecCCCCCCH--------HHH-HHHHHHHHHHhhhccccCCcEEEEEecchh
Q psy7365         277 PASTVILDEPTSGVDP--------YSR-RSIWELLIKVYYASHSLSGRTVILTTHYMD  325 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~--------~~~-~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~  325 (601)
                      +++++|+|+.++-...        ..+ ..+.+.+.++.... +..|.+||++.|-..
T Consensus       203 ~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la-~~~~~~Vi~~nq~~~  259 (324)
T 2z43_A          203 SIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLA-EVYDIAVIITNQVMA  259 (324)
T ss_dssp             TEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHH-HHHTCEEEEEEEC--
T ss_pred             CCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHH-HHhCCEEEEEcceee
Confidence            3689999999865432        121 23444444443221 234899999988654

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=86.74  E-value=0.08  Score=50.98  Aligned_cols=20  Identities=30%  Similarity=0.657  Sum_probs=13.9

Q ss_pred             ccCCCCCCCccccchhhhHHHhccCCCC
Q psy7365          79 LGPSGITLGLHTLGLEFVSRSMLMGMLP  106 (601)
Q Consensus        79 ~g~~g~~~g~~~~g~~~~~~~~l~Gl~~  106 (601)
                      +||||+  |||||     . +.|.+..+
T Consensus        25 ~GPSGa--GKsTL-----~-~~L~~~~~   44 (197)
T 3ney_A           25 IGASGV--GRSHI-----K-NALLSQNP   44 (197)
T ss_dssp             ECCTTS--SHHHH-----H-HHHHHHCT
T ss_pred             ECcCCC--CHHHH-----H-HHHHhhCC
Confidence            899999  56554     4 46666665

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=86.68  E-value=0.13  Score=49.14  Aligned_cols=29  Identities=24%  Similarity=0.272  Sum_probs=19.9

Q ss_pred             cccCCCCCCCccccchhhhHHHhccCCCCC-CeeEEEE
Q psy7365          78 PLGPSGITLGLHTLGLEFVSRSMLMGMLPV-SSGTAKI  114 (601)
Q Consensus        78 ~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~-~~G~v~~  114 (601)
                      -+||||+  ||||     ++ ++|++.+++ ..+.+..
T Consensus        13 l~GpsGs--GKsT-----l~-~~L~~~~~~~~~~~~~~   42 (208)
T 3tau_A           13 LSGPSGV--GKGT-----VR-EAVFKDPETSFDYSISM   42 (208)
T ss_dssp             EECCTTS--CHHH-----HH-HHHHHSTTCCCEECCCE
T ss_pred             EECcCCC--CHHH-----HH-HHHHhhCCCcEEEEEec
Confidence            3899999  4554     44 588899887 4444444

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=86.51  E-value=0.13  Score=55.27  Aligned_cols=57  Identities=16%  Similarity=0.140  Sum_probs=41.7

Q ss_pred             hhcccccccccCCCccceeecceEEeec-----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP-----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      ..++|.+.|+...      ++++|+ .+     +||+|+       ||||++. .|++.+.+..|+|.+.+.|+..+
T Consensus        78 v~~~L~~~~~~~~------~~i~l~-~~~vi~i~G~~Gs-------GKTT~~~-~LA~~l~~~g~~Vllvd~D~~r~  139 (425)
T 2ffh_A           78 VYEALKEALGGEA------RLPVLK-DRNLWFLVGLQGS-------GKTTTAA-KLALYYKGKGRRPLLVAADTQRP  139 (425)
T ss_dssp             HHHHHHHHTTSSC------CCCCCC-SSEEEEEECCTTS-------SHHHHHH-HHHHHHHTTTCCEEEEECCSSCH
T ss_pred             HHHHHHHHhCCCc------ccccCC-CCeEEEEECCCCC-------CHHHHHH-HHHHHHHHcCCeEEEeeccccCc
Confidence            4677888876432      567776 33     899999       4555554 77899999999999998887553

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=86.19  E-value=0.14  Score=48.40  Aligned_cols=94  Identities=10%  Similarity=0.132  Sum_probs=61.5

Q ss_pred             HHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccCh
Q psy7365         411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM  490 (601)
Q Consensus       411 ~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl  490 (601)
                      +.++.+.+|....       .|.|+.+|..++..+..+|+.+..+  ++.++|..++.+++.+...  .+.++|+.+|.+
T Consensus        47 ~~~i~~~~g~~~~-------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l  115 (206)
T 1jjv_A           47 LSKIVEHFGAQIL-------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLL  115 (206)
T ss_dssp             HHHHHHHHCTTCC-------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTT
T ss_pred             HHHHHHHhCHHHh-------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechh
Confidence            4455666665322       3678899999999888887644332  4567788777777766543  356899999999


Q ss_pred             hHH--HhhCCEEEEEeCCEEEEecCHHHHHHHhC
Q psy7365         491 EEC--EALCTKLTIMVNGQFTCLGSATHLKSKYG  522 (601)
Q Consensus       491 ~e~--~~l~drv~iL~~G~iv~~G~~~~L~~~~~  522 (601)
                      .+.  ...||++++++       .+++.+.++..
T Consensus       116 ~e~~~~~~~d~vi~l~-------~~~e~~~~Rl~  142 (206)
T 1jjv_A          116 IENKLTALCDRILVVD-------VSPQTQLARSA  142 (206)
T ss_dssp             TTTTCGGGCSEEEEEE-------CCHHHHHHHHC
T ss_pred             hhcCcHhhCCEEEEEE-------CCHHHHHHHHH
Confidence            887  77899998874       46777766654

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=85.88  E-value=0.026  Score=58.74  Aligned_cols=45  Identities=11%  Similarity=-0.048  Sum_probs=31.6

Q ss_pred             eeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCC
Q psy7365          68 GISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIR  120 (601)
Q Consensus        68 ~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~  120 (601)
                      +++++++++..      +|++|+  |||     |++ +.|+|.+.+..|+|.+-+.++.
T Consensus        45 ~~~~l~~~~~~~~~i~i~G~~g~--GKS-----Tl~-~~l~~~~~~~~~~v~v~~~d~~   95 (341)
T 2p67_A           45 LLDAIMPYCGNTLRLGVTGTPGA--GKS-----TFL-EAFGMLLIREGLKVAVIAVDPS   95 (341)
T ss_dssp             HHHHHGGGCSCSEEEEEEECTTS--CHH-----HHH-HHHHHHHHHTTCCEEEEEECCC
T ss_pred             HHHhCCcccCCCEEEEEEcCCCC--CHH-----HHH-HHHHHHHHhcCCeEEEEeecCC
Confidence            55566654433      899999  455     444 5788998888888888776653

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=85.19  E-value=0.1  Score=53.24  Aligned_cols=58  Identities=16%  Similarity=0.150  Sum_probs=39.8

Q ss_pred             hhhcccccccccCCCccceeec-ceEEeec-----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC
Q psy7365          50 SLFESLSENRDKLGIDSYGISD-TSLEEQP-----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT  121 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~  121 (601)
                      +..++|.+.|+...      ++ ++|+..+     +||+|+  ||||     ++. .|++.+.+..|+|.+.+.++..
T Consensus        75 ~~~~~l~~~~~~~~------~~~i~~~~~~~vi~i~G~~G~--GKTT-----~~~-~la~~~~~~g~~v~l~~~D~~r  138 (297)
T 1j8m_F           75 IVYDELSNLFGGDK------EPKVIPDKIPYVIMLVGVQGT--GKTT-----TAG-KLAYFYKKKGFKVGLVGADVYR  138 (297)
T ss_dssp             HHHHHHHHHTTCSC------CCCCSCSSSSEEEEEECSSCS--STTH-----HHH-HHHHHHHHTTCCEEEEECCCSS
T ss_pred             HHHHHHHHHhcccc------ccccccCCCCeEEEEECCCCC--CHHH-----HHH-HHHHHHHHCCCeEEEEecCCCC
Confidence            35778888876432      34 5554322     899999  4554     454 6788888888999998877643

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=82.91  E-value=0.26  Score=51.14  Aligned_cols=49  Identities=14%  Similarity=0.118  Sum_probs=27.9

Q ss_pred             CCcEEEEecCCCCCCHH--------HH-HHHHHHHHHHhhhccccCCcEEEEEecchhH
Q psy7365         277 PASTVILDEPTSGVDPY--------SR-RSIWELLIKVYYASHSLSGRTVILTTHYMDE  326 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~--------~~-~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~  326 (601)
                      .++++|+|+.++-....        .+ ..+.+.+..+.... +..|.+||++.|-...
T Consensus       219 ~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la-~~~~~~Vi~~nq~~~~  276 (343)
T 1v5w_A          219 IFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKIS-EEYNVAVFVTNQMTAD  276 (343)
T ss_dssp             SEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHH-HHHTCEEEEEECC---
T ss_pred             CccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH-HHhCCEEEEEeeceec
Confidence            36899999999765432        11 12444444433221 2358999999986543

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=82.45  E-value=0.013  Score=64.65  Aligned_cols=71  Identities=13%  Similarity=0.016  Sum_probs=55.2

Q ss_pred             HHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHH--HhhCCEEEEEeCCEEEEe-cCHHHHH
Q psy7365         443 IALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEEC--EALCTKLTIMVNGQFTCL-GSATHLK  518 (601)
Q Consensus       443 ~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~--~~l~drv~iL~~G~iv~~-G~~~~L~  518 (601)
                      +||..| ++||+ ||++.+|| .+..+..   ++.++ +.++.++||+|+++  .++++++..+..+.++.. ++++++.
T Consensus        28 ralt~d-dvlLm-p~~s~~~p-~~v~l~~---eLt~~~~~~iP~vsa~md~~t~~~la~~ia~~gg~gii~~~~t~e~~~  101 (514)
T 1jcn_A           28 DDLTYN-DFLIL-PGFIDFIA-DEVDLTS---ALTRKITLKTPLISSPMDTVTEADMAIAMALMGGIGFIHHNCTPEFQA  101 (514)
T ss_dssp             SCCCGG-GEEEC-CCCCCSCG-GGCBCCE---ESSSSCEESSCEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHHHH
T ss_pred             cccccC-cEEec-cCccCCCc-ceeEEEe---eccCCeeEeceEEEEehhhhhhhhHHHHHHhcCCeeEEecCCCHHHHH
Confidence            788889 99999 99999999 4444332   33333 67889999999999  888999999888877754 6888764


Q ss_pred             H
Q psy7365         519 S  519 (601)
Q Consensus       519 ~  519 (601)
                      +
T Consensus       102 ~  102 (514)
T 1jcn_A          102 N  102 (514)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=82.14  E-value=0.39  Score=45.31  Aligned_cols=23  Identities=26%  Similarity=0.237  Sum_probs=15.9

Q ss_pred             eecccCCCCCCCccccchhhhHHHhccCCCC
Q psy7365          76 EQPLGPSGITLGLHTLGLEFVSRSMLMGMLP  106 (601)
Q Consensus        76 ~~~~g~~g~~~g~~~~g~~~~~~~~l~Gl~~  106 (601)
                      +.-+|||||  ||||     ++ ++|++.++
T Consensus        24 i~i~G~~Gs--GKST-----l~-~~L~~~~~   46 (207)
T 2qt1_A           24 IGISGVTNS--GKTT-----LA-KNLQKHLP   46 (207)
T ss_dssp             EEEEESTTS--SHHH-----HH-HHHHTTST
T ss_pred             EEEECCCCC--CHHH-----HH-HHHHHhcC
Confidence            334899999  4554     45 58888764

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=81.91  E-value=1  Score=43.19  Aligned_cols=69  Identities=14%  Similarity=0.107  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHh--CCCCEEEEECCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEEccCh-hHHHhhCCEEEEEeC
Q psy7365         436 KRKLSTAIALL--GNTPLIFLDEPTS--GMDPGARRFLWTCIERAVSEGRCVILTSHNM-EECEALCTKLTIMVN  505 (601)
Q Consensus       436 kQRl~lA~AL~--~~P~lLlLDEPTs--GLD~~~~~~i~~lL~~l~~~G~tVllsTHdl-~e~~~l~drv~iL~~  505 (601)
                      +..+..++..+  .+.+++||||.+.  .++.....++.++|.+ +-+...||+|+.+. +++.++||-|.-|..
T Consensus       106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~  179 (196)
T 1g5t_A          106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVSELRP  179 (196)
T ss_dssp             HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCCcHHHHHhCcceeeecc
Confidence            45556666666  6789999999865  2344445667877764 23468899999876 578889999988864

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=80.99  E-value=1.5  Score=44.69  Aligned_cols=54  Identities=15%  Similarity=0.318  Sum_probs=42.3

Q ss_pred             cCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CcE--EEEEcc
Q psy7365         430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRC--VILTSH  488 (601)
Q Consensus       430 ~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~-G~t--VllsTH  488 (601)
                      .||.++++|+..|...+.++++++.|+|...     ..++...++++.++ |..  +|++-|
T Consensus       133 ~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVID~  189 (315)
T 3bh0_A          133 DFASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMIDY  189 (315)
T ss_dssp             HHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence            3999999999999999999999999998643     34566667776554 666  887755

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=80.54  E-value=0.29  Score=48.15  Aligned_cols=75  Identities=17%  Similarity=0.230  Sum_probs=47.0

Q ss_pred             HHHhCCCCEEEEECCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEcc-----ChhHH----------H-------hhCCE
Q psy7365         443 IALLGNTPLIFLDEPTS-GMDPGARRFLWTCIERAVSEGRCVILTSH-----NMEEC----------E-------ALCTK  499 (601)
Q Consensus       443 ~AL~~~P~lLlLDEPTs-GLD~~~~~~i~~lL~~l~~~G~tVllsTH-----dl~e~----------~-------~l~dr  499 (601)
                      .++...|+++|+|||-. ..+.......|+.+.+....|..|+.++|     .++++          +       ..||.
T Consensus        79 ~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~  158 (228)
T 2r8r_A           79 ALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFD  158 (228)
T ss_dssp             HHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSE
T ss_pred             HHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCe
Confidence            33445899999999753 23433334456666666678889999998     44444          1       23444


Q ss_pred             EEEEeCCEEEEecCHHHHHHHhCCc
Q psy7365         500 LTIMVNGQFTCLGSATHLKSKYGQG  524 (601)
Q Consensus       500 v~iL~~G~iv~~G~~~~L~~~~~~~  524 (601)
                      |.++       +-+|++|.+++..+
T Consensus       159 v~lv-------D~~p~~l~~rl~~g  176 (228)
T 2r8r_A          159 LVLI-------DLPPRELLERLRDG  176 (228)
T ss_dssp             EEEB-------CCCHHHHHHHHHTT
T ss_pred             EEEe-------cCCHHHHHHHHHCC
Confidence            4333       45788887776554

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=80.51  E-value=0.18  Score=52.51  Aligned_cols=41  Identities=12%  Similarity=0.114  Sum_probs=31.6

Q ss_pred             hCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHH
Q psy7365         446 LGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECE  494 (601)
Q Consensus       446 ~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~  494 (601)
                      ..+|+++.    +|++|..+..++++.|.++...    +..||.+.+..
T Consensus       250 ~~~~~vi~----iSA~~g~Gi~~L~~~I~~~~~~----~~~~~~~~~~R  290 (349)
T 2www_A          250 VWKPKVIR----ISARSGEGISEMWDKMKDFQDL----MLASGELTAKR  290 (349)
T ss_dssp             -CCCEEEE----CCTTTCTTHHHHHHHHHHHHHH----HHHHSHHHHHH
T ss_pred             CCCceEEE----EecCCCCCHHHHHHHHHHHHHH----HhhCchHHHHH
Confidence            34677665    9999999999999999987643    35688887763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	601
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	4e-31
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	2e-13
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	2e-12
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	3e-29
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	8e-15
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	9e-15
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	2e-24
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	9e-15
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	2e-10
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	3e-24
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	3e-11
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	7e-06
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	7e-24
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	4e-12
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	5e-09
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	5e-23
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	2e-09
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	6e-08
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	2e-22
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	2e-12
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	8e-06
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	7e-22
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	6e-10
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	6e-08
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	3e-19
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	4e-10
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	3e-09
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	5e-19
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	2e-11
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	2e-06
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	7e-18
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	6e-09
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	4e-17
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	2e-11
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	3e-05
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	8e-17
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	1e-09
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	6e-08
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	1e-16
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	7e-10
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	3e-15
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	3e-11
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	2e-07
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	1e-12
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	2e-08
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	7e-05
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	2e-12
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	1e-08
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	2e-11
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	3e-06
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	5e-05
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	2e-11
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	1e-07
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	1e-05
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	2e-09
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	7e-07
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	6e-05
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	2e-09
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	1e-05
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	8e-08
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	1e-06
d1w1wa_	427	c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac	3e-04
d1w1wa_	427	c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac	4e-04

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score =  119 bits (299), Expect = 4e-31
 Identities = 48/158 (30%), Positives = 73/158 (46%)

Query: 365 MKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYS 424
            +    +  I Y P+       +   E+L F +      S  +  +V  +     LG   
Sbjct: 68  EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI 127

Query: 425 DREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 484
              V T S G  RKL  A AL+ N  L  LDEPTSG+D    R +   +++A  EG  ++
Sbjct: 128 KDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL 187

Query: 485 LTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYG 522
           ++SHNM E E LC ++ ++ NG     G+   LK +Y 
Sbjct: 188 VSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 225

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 67.7 bits (165), Expect = 2e-13
 Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 8/130 (6%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
           +GP+G   G  T         ++  ++  SSG   ++  ++  +   +R+ +   P+   
Sbjct: 34  IGPNGA--GKTTTL------RIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAG 85

Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNV 198
            +  +   E++ F +          +  +       G+  K     +T S GM RKL   
Sbjct: 86  AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIA 145

Query: 199 KVWFNNKAWI 208
           +    N    
Sbjct: 146 RALMVNPRLA 155

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 65.0 bits (158), Expect = 2e-12
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 6/89 (6%)

Query: 269 VLFAMSFVP-ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA 327
           +L A + +      ILDEPTSG+D  + R + ++L +      S  G T+++++H M E 
Sbjct: 142 LLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ-----ASQEGLTILVSSHNMLEV 196

Query: 328 DLLGDRIAIIAAGKLQCCGSSVFLKNSFA 356
           + L DRIA+I  G +   G+   LK  + 
Sbjct: 197 EFLCDRIALIHNGTIVETGTVEELKERYK 225

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  113 bits (285), Expect = 3e-29
 Identities = 32/150 (21%), Positives = 68/150 (45%), Gaps = 1/150 (0%)

Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV 428
           P+   I    Q  A+   +T  E++ F  +++  P   ++  V  +     +    +R  
Sbjct: 75  PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP 134

Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTS 487
             LSGG +++++ A A++    ++ +DEP S +D   R  +   I++   +     I  +
Sbjct: 135 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 194

Query: 488 HNMEECEALCTKLTIMVNGQFTCLGSATHL 517
           H+  E   +  ++ +M  GQ   +GS T +
Sbjct: 195 HDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 224

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 72.1 bits (177), Expect = 8e-15
 Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 12/171 (7%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
           LGPSG   G  T         M+ G+   + G     D D  T +    R++ +  Q  A
Sbjct: 38  LGPSGC--GKTTTL------RMIAGLEEPTEGRIYFGDRD-VTYLPPKDRNISMVFQSYA 88

Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNV 198
           ++  +TV E++ F  ++K+ PKD     +      L I          LSGG ++++   
Sbjct: 89  VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVA 148

Query: 199 KVWFNNKAWIAA---VSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNL 246
           +        +     +S ++A   V +RA +     +     + + H    
Sbjct: 149 RAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVE 199

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 71.7 bits (176), Expect = 9e-15
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 269 VLFAMSFVP-ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA 327
           V  A + V     +++DEP S +D   R ++   + K+          T I  TH   EA
Sbjct: 145 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKL----QQKLKVTTIYVTHDQVEA 200

Query: 328 DLLGDRIAIIAAGKLQCCGS 347
             +GDRIA++  G+L   GS
Sbjct: 201 MTMGDRIAVMNRGQLLQIGS 220

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score =  100 bits (250), Expect = 2e-24
 Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 1/155 (0%)

Query: 364 DMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHY 423
           + +    +  IG   Q   L    T   ++     + N P   +   V E L+   LG  
Sbjct: 74  ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK 133

Query: 424 SDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRC 482
            D     LSGG K++++ A AL  N  ++  DE TS +DP   R +   ++      G  
Sbjct: 134 HDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLT 193

Query: 483 VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
           ++L +H M+  + +C  + ++ NG+     + + +
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 228

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 71.8 bits (176), Expect = 9e-15
 Identities = 35/175 (20%), Positives = 73/175 (41%), Gaps = 15/175 (8%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI----RTDMTTIRRSLGVCP 134
           +G SG   G  TL         +  +   + G+  +   ++     +++T  RR +G+  
Sbjct: 37  IGASGA--GKSTLI------RCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIF 88

Query: 135 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRK 194
           Q+  L    TV  ++    +L   PKD  +  ++ ++  +G+  K  S  + LSGG +++
Sbjct: 89  QHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQR 148

Query: 195 LDNVKVWFNNKAWIAA---VSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNL 246
           +   +   +N   +      S ++ A    +   L     R    I+ I H M++
Sbjct: 149 VAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDV 203

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 58.7 bits (142), Expect = 2e-10
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 5/80 (6%)

Query: 269 VLFAMSFVPASTVI-LDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA 327
           V  A +      V+  DE TS +DP + RSI EL        +   G T++L TH MD  
Sbjct: 149 VAIARALASNPKVLLCDEATSALDPATTRSILEL----LKDINRRLGLTILLITHEMDVV 204

Query: 328 DLLGDRIAIIAAGKLQCCGS 347
             + D +A+I+ G+L    +
Sbjct: 205 KRICDCVAVISNGELIEQDT 224

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 99.6 bits (248), Expect = 3e-24
 Identities = 31/145 (21%), Positives = 56/145 (38%)

Query: 375 GYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGG 434
              P+   +   LT  E+L   +  R     +   +         L     +   TLSGG
Sbjct: 84  ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGG 143

Query: 435 NKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECE 494
            ++ L+   AL+    L+ +DEP+ G+ P     ++  I++   EG  ++L   N     
Sbjct: 144 EQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGAL 203

Query: 495 ALCTKLTIMVNGQFTCLGSATHLKS 519
            +     ++  GQ    G A+ L  
Sbjct: 204 KVAHYGYVLETGQIVLEGKASELLD 228

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 61.5 bits (149), Expect = 3e-11
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           +++DEP+ G+ P     ++E++ K      +  G T++L       A  +     ++  G
Sbjct: 161 LMMDEPSLGLAPILVSEVFEVIQK-----INQEGTTILLVEQNALGALKVAHYGYVLETG 215

Query: 341 KLQCCGS-SVFLKNSFARGYYL 361
           ++   G  S  L N   R  YL
Sbjct: 216 QIVLEGKASELLDNEMVRKAYL 237

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 45.3 bits (107), Expect = 7e-06
 Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 10/119 (8%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIR--RSLGVCPQY 136
           +G +G   G  T        S + G++    G       DI      +     + + P+ 
Sbjct: 38  IGANGA--GKTTTL------SAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEG 89

Query: 137 NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKL 195
             +F +LTV E++   +  ++  + + +           +  +   L  TLSGG Q+ L
Sbjct: 90  RRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQML 148

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 98.8 bits (246), Expect = 7e-24
 Identities = 35/193 (18%), Positives = 75/193 (38%), Gaps = 6/193 (3%)

Query: 339 AGKLQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREH-LEFYS 397
            G +   G ++ L         ++   +    ++ +    Q   L   +T  E+ +E   
Sbjct: 56  EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPI 115

Query: 398 RVRNLPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDE 456
           +V  L          + L K  +      +    LSGG ++++S A AL     ++  DE
Sbjct: 116 QVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDE 175

Query: 457 PTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA-- 514
           PTS +DP     +   +++   EG+ +++ +H M     + + +  +  G+    G    
Sbjct: 176 PTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQ 235

Query: 515 --THLKSKYGQGY 525
              + +S   Q +
Sbjct: 236 VFGNPQSPRLQQF 248

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 64.5 bits (157), Expect = 4e-12
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA 339
            ++ DEPTS +DP     +            +  G+T+++ TH M  A  +   +  +  
Sbjct: 170 VLLFDEPTSALDPELVGEVLR-----IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQ 224

Query: 340 GKLQCCGS 347
           GK++  G 
Sbjct: 225 GKIEEEGD 232

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 55.2 bits (133), Expect = 5e-09
 Identities = 29/187 (15%), Positives = 63/187 (33%), Gaps = 28/187 (14%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI--------------RTDMT 124
           +G SG   G  T          +  +   S G   +   +I              +  + 
Sbjct: 34  IGSSGS--GKSTFL------RCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLR 85

Query: 125 TIRRSLGVCPQYNALFDKLTVEEHMWFYS-QLKQVPKDLAQLEISNMIGDLGIPHK-RTS 182
            +R  L +  Q+  L+  +TV E++     Q+  + K  A+      +  +GI  + +  
Sbjct: 86  LLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGK 145

Query: 183 LANTLSGGMQRKLDNVKVWFNNKAWIAA---VSFMNAANNVILRASLPSNVSRDDYAIVA 239
               LSGG Q+++   +        +      S ++      +   +    + +   +V 
Sbjct: 146 YPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQL-AEEGKTMVV 204

Query: 240 INHPMNL 246
           + H M  
Sbjct: 205 VTHEMGF 211

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 95.8 bits (238), Expect = 5e-23
 Identities = 35/182 (19%), Positives = 74/182 (40%), Gaps = 3/182 (1%)

Query: 337 IAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFY 396
           + AG  +     +++ +           +   P+   I    Q  AL   +T  +++ F 
Sbjct: 48  MIAGLEEPSRGQIYIGDKLV--ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFP 105

Query: 397 SRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDE 456
            ++R +P   ++  V E      L    +R+ R LSGG +++++   A++    +  +DE
Sbjct: 106 LKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDE 165

Query: 457 PTSGMDPGARRFLWT-CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 515
           P S +D   R  +     +     G   I  +H+  E   +  ++ +M  G    +GS  
Sbjct: 166 PLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPD 225

Query: 516 HL 517
            +
Sbjct: 226 EV 227

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 56.5 bits (136), Expect = 2e-09
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
            ++DEP S +D   R  +   L K+        G T I  TH   EA  +GDRIA++  G
Sbjct: 161 FLMDEPLSNLDAKLRVRMRAELKKL----QRQLGVTTIYVTHDQVEAMTMGDRIAVMNRG 216

Query: 341 KLQCCGS 347
            LQ  GS
Sbjct: 217 VLQQVGS 223

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 51.9 bits (124), Expect = 6e-08
 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 13/122 (10%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI-----RTDMTTIRRSLGVC 133
           LGPSG   G  T         M+ G+   S G   I D  +        +    R + + 
Sbjct: 35  LGPSGC--GKTTTL------RMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMV 86

Query: 134 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQR 193
            Q  AL+  +TV +++ F  +L++VP+      +  +   LG+          LSGG ++
Sbjct: 87  FQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQ 146

Query: 194 KL 195
           ++
Sbjct: 147 RV 148

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 94.7 bits (235), Expect = 2e-22
 Identities = 27/104 (25%), Positives = 46/104 (44%)

Query: 411 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLW 470
             + L    L H  DR+   LSGG  + +    AL+ N  +I +DEP +G+ PG    ++
Sbjct: 131 AFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 190

Query: 471 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 514
             +    ++G   ++  H ++        L +M NGQ    G  
Sbjct: 191 NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 234

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 65.4 bits (159), Expect = 2e-12
 Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA 339
            +++DEP +GV P     I+  ++++        G T ++  H +D      D + ++  
Sbjct: 171 MIVMDEPIAGVAPGLAHDIFNHVLEL-----KAKGITFLIIEHRLDIVLNYIDHLYVMFN 225

Query: 340 GKLQCCGS 347
           G++   G 
Sbjct: 226 GQIIAEGR 233

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 45.3 bits (107), Expect = 8e-06
 Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 23/145 (15%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVC--PQY 136
           +GP+G   G  TL       +++ G L    G     + DI           G+    Q 
Sbjct: 36  IGPNGS--GKSTLI------NVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQT 87

Query: 137 NALFDKLTVEEHMWFYSQL------------KQVPKDLAQLE-ISNMIGDLGIPHKRTSL 183
                ++TV E++                  K +PK+   +E    ++  L + H     
Sbjct: 88  PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK 147

Query: 184 ANTLSGGMQRKLDNVKVWFNNKAWI 208
           A  LSGG  + ++  +    N   I
Sbjct: 148 AGELSGGQMKLVEIGRALMTNPKMI 172

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 92.7 bits (230), Expect = 7e-22
 Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 1/150 (0%)

Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV 428
           P +  +G   Q  AL   L+  E++ F  ++      ++N  VN+      L H  DR+ 
Sbjct: 69  PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP 128

Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVILTS 487
           + LSGG +++++    L+    +  LDEP S +D   R  +   I R     GR +I  +
Sbjct: 129 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 188

Query: 488 HNMEECEALCTKLTIMVNGQFTCLGSATHL 517
           H+  E   L  K+ ++  G+   +G    L
Sbjct: 189 HDQVEAMTLADKIVVLDAGRVAQVGKPLEL 218

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 57.7 bits (139), Expect = 6e-10
 Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 9/140 (6%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
           +GPSG   G  TL        M+ G+  ++SG   I +     D     R +G+  Q  A
Sbjct: 32  VGPSGC--GKSTLL------RMIAGLETITSGDLFIGEKR-MNDTPPAERGVGMVFQSYA 82

Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNV 198
           L+  L+V E+M F  +L    K++    ++ +   L + H        LSGG ++++   
Sbjct: 83  LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIG 142

Query: 199 KVWFNNKAWIAAVSFMNAAN 218
           +      +       ++  +
Sbjct: 143 RTLVAEPSVFLLDEPLSNLD 162

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 51.5 bits (123), Expect = 6e-08
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 269 VLFAMSFVPASTVIL-DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEA 327
           V    + V   +V L DEP S +D   R  +   + ++    H   GRT+I  TH   EA
Sbjct: 139 VAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRL----HKRLGRTMIYVTHDQVEA 194

Query: 328 DLLGDRIAIIAAGKLQCCGS 347
             L D+I ++ AG++   G 
Sbjct: 195 MTLADKIVVLDAGRVAQVGK 214

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 85.1 bits (210), Expect = 3e-19
 Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 1/151 (0%)

Query: 368 APQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDRE 427
            P+   IG   Q  AL   LT  E++ F      +    +   V E      + H  +  
Sbjct: 78  PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF 137

Query: 428 VRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILT 486
            R LSG  +++++ A AL+ +  L+ LDEP S +D   R        E     G  +++ 
Sbjct: 138 PRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVV 197

Query: 487 SHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
           SH+  +  A+  ++ ++V G+   +G    L
Sbjct: 198 SHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 58.2 bits (140), Expect = 4e-10
 Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 15/175 (8%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI----RTDMTTIRRSLGVCP 134
           LGPSG   G  T         ++ G+   S+G     D  +    +  +    R +G+  
Sbjct: 37  LGPSGA--GKTTFM------RIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVF 88

Query: 135 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRK 194
           Q  AL+  LT  E++ F     ++ K+  +  +  +   L I H        LSG  Q++
Sbjct: 89  QTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQR 148

Query: 195 LDNVKVWFNNKAWIA---AVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNL 246
           +   +    + + +      S ++A      RA +    SR    ++ ++H    
Sbjct: 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD 203

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 55.9 bits (134), Expect = 3e-09
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA 339
            ++LDEP S +D   R S   L+ +V     S  G T+++ +H   +   + DR+ ++  
Sbjct: 161 LLLLDEPFSNLDARMRDSARALVKEV----QSRLGVTLLVVSHDPADIFAIADRVGVLVK 216

Query: 340 GKLQCCGS 347
           GKL   G 
Sbjct: 217 GKLVQVGK 224

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 84.1 bits (208), Expect = 5e-19
 Identities = 30/152 (19%), Positives = 68/152 (44%), Gaps = 6/152 (3%)

Query: 361 LSLDMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFAL 420
           L  D  +  ++  IG+  Q   L   LT  E++E     +   ++        +L    +
Sbjct: 72  LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131

Query: 421 ----GHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERA 476
                 +++ +   LSGG +++++ A AL  N P+I  D+PT  +D      +   +++ 
Sbjct: 132 AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKL 191

Query: 477 VSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 507
             E G+ V++ +H++        ++  + +G+
Sbjct: 192 NEEDGKTVVVVTHDINVAR-FGERIIYLKDGE 222

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 61.4 bits (149), Expect = 2e-11
 Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 5/63 (7%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           ++ D+PT  +D  +   I +LL K+    +   G+TV++ TH ++ A   G+RI  +  G
Sbjct: 167 ILADQPTGALDSKTGEKIMQLLKKL----NEEDGKTVVVVTHDINVAR-FGERIIYLKDG 221

Query: 341 KLQ 343
           +++
Sbjct: 222 EVE 224

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 30/180 (16%), Positives = 60/180 (33%), Gaps = 20/180 (11%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI-----RTDMTTIRRSLGVC 133
           +GPSG   G  T+       +++  +   + G   I +               R  +G  
Sbjct: 37  MGPSGS--GKSTML------NIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFV 88

Query: 134 PQYNALFDKLTVEEHMWF---YSQLKQVPKDLAQLEISNMIGDLGIPHK-RTSLANTLSG 189
            Q   L   LT  E++     +     +  +  +      +    +  +      N LSG
Sbjct: 89  FQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSG 148

Query: 190 GMQRKLDNVKVWFNNKAWIAA---VSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNL 246
           G Q+++   +   NN   I A      +++     +   L      D   +V + H +N+
Sbjct: 149 GQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV 208

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 80.0 bits (197), Expect = 7e-18
 Identities = 29/170 (17%), Positives = 66/170 (38%), Gaps = 14/170 (8%)

Query: 331 GDRIAIIA---AGK---LQCCGSSVFLKNSFARGYYLSLDMKSAPQKSYIGYCPQFDALN 384
           G+ +        GK   L+   +  +LK       Y  + +     K  I + P+   + 
Sbjct: 27  GNVVNFHGPNGIGKTTLLKTIST--YLKPLKGEIIYNGVPITKVKGK--IFFLPEEIIVP 82

Query: 385 DRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA 444
            +++  ++L+  + +  +        + ++L    +     + +  LS G  R++  A  
Sbjct: 83  RKISVEDYLKAVASLYGVKVN--KNEIMDALESVEVLDLKKK-LGELSQGTIRRVQLAST 139

Query: 445 LLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEEC 493
           LL N  +  LD+P   +D  ++  +   I   + E G  +I +   +  C
Sbjct: 140 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYC 189

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 53.8 bits (129), Expect = 6e-09
 Identities = 24/168 (14%), Positives = 57/168 (33%), Gaps = 24/168 (14%)

Query: 181 TSLANTLSGGMQRKLDNVKV----WFNNKAWIAAVS-------FMNAANNVILRASLPSN 229
           T+L  T+S  ++     +          K  I  +         ++  + +   ASL   
Sbjct: 41  TTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLY-G 99

Query: 230 VSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSG 289
           V  +   I+     + +   +  L  L + GT   V +     ++       +LD+P   
Sbjct: 100 VKVNKNEIMDALESVEVLDLKKKLGELSQ-GTIRRVQLASTLLVNA---EIYVLDDPVVA 155

Query: 290 VDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII 337
           +D  S+  + + ++++        G  +I +   +       D    +
Sbjct: 156 IDEDSKHKVLKSILEI----LKEKGIVIISSREELSYC----DVNENL 195

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 78.4 bits (193), Expect = 4e-17
 Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 12/152 (7%)

Query: 373 YIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLS 432
           +  Y  Q            +L  +   +         ++N+     AL     R    LS
Sbjct: 73  HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTE-----LLNDVAGALALDDKLGRSTNQLS 127

Query: 433 GGNKRKLSTAIALLGNTP-------LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 485
           GG  +++  A  +L  TP       L+ LDEP + +D   +  L   +     +G  +++
Sbjct: 128 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVM 187

Query: 486 TSHNMEECEALCTKLTIMVNGQFTCLGSATHL 517
           +SH++        +  ++  G+    G    +
Sbjct: 188 SSHDLNHTLRHAHRAWLLKGGKMLASGRREEV 219

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 61.9 bits (150), Expect = 2e-11
 Identities = 12/67 (17%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           ++LDEP + +D   + ++ ++L  +        G  +++++H ++       R  ++  G
Sbjct: 154 LLLDEPMNSLDVAQQSALDKILSALCQ-----QGLAIVMSSHDLNHTLRHAHRAWLLKGG 208

Query: 341 KLQCCGS 347
           K+   G 
Sbjct: 209 KMLASGR 215

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 43.8 bits (103), Expect = 3e-05
 Identities = 25/138 (18%), Positives = 45/138 (32%), Gaps = 21/138 (15%)

Query: 65  DSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHD 118
           +S  +   S E +       +GP+G   G  TL       + + GM     G+ +     
Sbjct: 11  ESTRLGPLSGEVRAGEILHLVGPNGA--GKSTLL------ARMAGMTS-GKGSIQFAGQP 61

Query: 119 IRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP 177
           +     T +        Q         V  ++  +   K   + L       + G L + 
Sbjct: 62  LEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLND-----VAGALALD 116

Query: 178 HKRTSLANTLSGGMQRKL 195
            K     N LSGG  +++
Sbjct: 117 DKLGRSTNQLSGGEWQRV 134

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 77.8 bits (191), Expect = 8e-17
 Identities = 35/153 (22%), Positives = 71/153 (46%), Gaps = 4/153 (2%)

Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV 428
           P+K  I +  Q  +L   +  +++LEF  R++ +        V ++     + H  DR  
Sbjct: 69  PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD---PKRVLDTARDLKIEHLLDRNP 125

Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTS 487
            TLSGG +++++ A AL+ N  ++ LDEP S +DP  +                 V+  +
Sbjct: 126 LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHIT 185

Query: 488 HNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 520
           H+  E   +  ++ ++++G+   +G    +  K
Sbjct: 186 HDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 56.6 bits (136), Expect = 1e-09
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIA 338
             ++LDEP S +DP ++ +  E+L  +    H  +  TV+  TH   EA ++ DRIA++ 
Sbjct: 147 KILLLDEPLSALDPRTQENAREMLSVL----HKKNKLTVLHITHDQTEARIMADRIAVVM 202

Query: 339 AGKLQCCGS 347
            GKL   G 
Sbjct: 203 DGKLIQVGK 211

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 51.6 bits (123), Expect = 6e-08
 Identities = 34/171 (19%), Positives = 65/171 (38%), Gaps = 15/171 (8%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
           LGP+G   G            ++ G     SG   +   D  TD++  +  +    Q  +
Sbjct: 32  LGPTGA--GKTLFL------ELIAGFHVPDSGRILLDGKD-VTDLSPEKHDIAFVYQNYS 82

Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNV 198
           LF  + V++++ F  ++K++      L+      DL I H       TLSGG Q+++   
Sbjct: 83  LFPHMNVKKNLEFGMRMKKIKDPKRVLD---TARDLKIEHLLDRNPLTLSGGEQQRVALA 139

Query: 199 KVWFNNKAWIAA---VSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNL 246
           +    N   +     +S ++       R  L     ++   ++ I H    
Sbjct: 140 RALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTE 190

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.4 bits (193), Expect = 1e-16
 Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 6/151 (3%)

Query: 374 IGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV----R 429
           + +C QF  +    T +E++ F           +        +        +  +     
Sbjct: 99  VSFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 157

Query: 430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 489
           TLSGG + ++S A A+  +  L  LD P   +D      ++      +   +  IL +  
Sbjct: 158 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 217

Query: 490 MEECEALCTKLTIMVNGQFTCLGSATHLKSK 520
           ME       K+ I+  G     G+ + L+S 
Sbjct: 218 MEHLR-KADKILILHQGSSYFYGTFSELQSL 247

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.0 bits (140), Expect = 7e-10
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
            +LD P   +D ++   ++E  +        ++ +T IL T  M E     D+I I+  G
Sbjct: 180 YLLDSPFGYLDVFTEEQVFESCVC-----KLMANKTRILVTSKM-EHLRKADKILILHQG 233

Query: 341 KLQCCGS 347
                G+
Sbjct: 234 SSYFYGT 240

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 73.5 bits (180), Expect = 3e-15
 Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 3/150 (2%)

Query: 369 PQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREV 428
           P++  IG+ PQ  AL   L+   ++ +   +RN+  V  +  V E   K  + H  DR+ 
Sbjct: 67  PERRGIGFVPQDYALFPHLSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKP 124

Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTS 487
             LSGG +++++ A AL+    L+ LDEP S +D   +  L              ++  +
Sbjct: 125 ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184

Query: 488 HNMEECEALCTKLTIMVNGQFTCLGSATHL 517
           H++ E   L  ++ +M+NG+    G    L
Sbjct: 185 HDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 61.6 bits (149), Expect = 3e-11
 Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 14/171 (8%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNA 138
           LGP+G   G            ++ G++    G  ++   DI T +   RR +G  PQ  A
Sbjct: 30  LGPTGA--GKSVFL------ELIAGIVKPDRGEVRLNGADI-TPLPPERRGIGFVPQDYA 80

Query: 139 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNV 198
           LF  L+V  ++ +  +   V +      +  M   LGI H        LSGG ++++   
Sbjct: 81  LFPHLSVYRNIAYGLR--NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALA 138

Query: 199 KVWFNNKAWIAAV---SFMNAANNVILRASLPSNVSRDDYAIVAINHPMNL 246
           +        +      S ++     +L   L       D  I+ + H +  
Sbjct: 139 RALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 50.0 bits (119), Expect = 2e-07
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA 339
            ++LDEP S VD  ++  + E L  V           ++  TH + EA +L D +A++  
Sbjct: 147 LLLLDEPLSAVDLKTKGVLMEELRFV----QREFDVPILHVTHDLIEAAMLADEVAVMLN 202

Query: 340 GKLQCCGS 347
           G++   G 
Sbjct: 203 GRIVEKGK 210

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 65.7 bits (160), Expect = 1e-12
 Identities = 30/168 (17%), Positives = 70/168 (41%), Gaps = 8/168 (4%)

Query: 364 DMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFAL--- 420
                  +  +G   Q + L +R +  +++   +   ++  V+    +  + +  +    
Sbjct: 69  LADPNWLRRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELRE 127

Query: 421 --GHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVS 478
                   +   LSGG +++++ A AL+ N  ++  DE TS +D  +   +   +   + 
Sbjct: 128 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKIC 186

Query: 479 EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQGYS 526
           +GR VI+ +H +   +    ++ +M  G+    G    L S+    YS
Sbjct: 187 KGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKELLSEPESLYS 233

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 53.0 bits (127), Expect = 2e-08
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 10/84 (11%)

Query: 264 LVAVTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHY 323
            +A+      +      +I DE TS +D  S   I   + K+        GRTVI+  H 
Sbjct: 147 RIAIARALVNNP---KILIFDEATSALDYESEHVIMRNMHKI------CKGRTVIIIAHR 197

Query: 324 MDEADLLGDRIAIIAAGKLQCCGS 347
           +       DRI ++  GK+   G 
Sbjct: 198 LSTVK-NADRIIVMEKGKIVEQGK 220

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 42.2 bits (99), Expect = 7e-05
 Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 13/135 (9%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DMTTIRRSLGVCPQYN 137
           +G SG   G  TL        ++       +G   I  HD+   D   +RR +GV  Q N
Sbjct: 35  VGRSGS--GKSTLT------KLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDN 86

Query: 138 ALFDKLTVEEHMWF--YSQLKQVPKDLAQLEISNMIGDL--GIPHKRTSLANTLSGGMQR 193
            L ++  ++          +++V          + I +L  G           LSGG ++
Sbjct: 87  VLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQ 146

Query: 194 KLDNVKVWFNNKAWI 208
           ++   +   NN   +
Sbjct: 147 RIAIARALVNNPKIL 161

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 64.9 bits (158), Expect = 2e-12
 Identities = 29/164 (17%), Positives = 68/164 (41%), Gaps = 7/164 (4%)

Query: 364 DMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSV---LLNTIVNESLNKFAL 420
           +   A  ++ +    Q   L +           +   +   +          + +NK   
Sbjct: 81  EYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDN 140

Query: 421 G--HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVS 478
           G           LSGG +++++ A ALL ++P++ LDE TS +D  + R +   ++    
Sbjct: 141 GLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-Q 199

Query: 479 EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYG 522
           + R  ++ +H +   E    ++ ++ +G     G+ + L +++G
Sbjct: 200 KNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQHG 242

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           +ILDE TS +D  S R+I   L ++         RT ++  H +   +   D I ++  G
Sbjct: 174 LILDEATSALDTESERAIQAALDEL------QKNRTSLVIAHRLSTIE-QADEIVVVEDG 226

Query: 341 KLQCCGS 347
            +   G+
Sbjct: 227 IIVERGT 233

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 62.2 bits (151), Expect = 2e-11
 Identities = 33/165 (20%), Positives = 64/165 (38%), Gaps = 9/165 (5%)

Query: 364 DMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG-- 421
           ++     +S IG+  Q  A+    T RE+L +          L   +       F     
Sbjct: 68  NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMP 126

Query: 422 ----HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAV 477
                        +SGG +++L+ A A L N  ++ LDE T+ +D  +   +   ++  +
Sbjct: 127 DQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS-L 185

Query: 478 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYG 522
            +GR  ++ +H +        K+  +  GQ T  G    L + + 
Sbjct: 186 MKGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVATHP 229

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           ++LDE T+ +D  S   + + L  +      + GRT ++  H +    +  D+I  I  G
Sbjct: 161 LMLDEATASLDSESESMVQKALDSL------MKGRTTLVIAHRLSTI-VDADKIYFIEKG 213

Query: 341 KLQCCGS 347
           ++   G 
Sbjct: 214 QITGSGK 220

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 14/123 (11%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DMTTIRRSLGVCPQYN 137
            GPSG   G  T+       S+L      ++G   I    I    +   R  +G   Q +
Sbjct: 34  AGPSGG--GKSTIF------SLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDS 85

Query: 138 ALFDKLTVEEHMWF-----YSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQ 192
           A+      E   +        +      DLA            +  +       +SGG +
Sbjct: 86  AIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQR 145

Query: 193 RKL 195
           ++L
Sbjct: 146 QRL 148

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 62.5 bits (152), Expect = 2e-11
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 429 RTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 488
             LSGG K++LS A   L N P++ LDE TS +D  +   +   ++  +S+ R  ++ +H
Sbjct: 153 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAH 211

Query: 489 NMEECEALCTKLTIMVNGQFTCLGSATHLKSKYG 522
            +        K+ ++ NG     G+   L +K G
Sbjct: 212 RLSTI-THADKIVVIENGHIVETGTHRELIAKQG 244

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           +ILDE TS +D  S   I E L  +         RT ++  H +       D+I +I  G
Sbjct: 176 LILDEATSALDLESESIIQEALDVL------SKDRTTLIVAHRLSTI-THADKIVVIENG 228

Query: 341 KLQCCGS 347
            +   G+
Sbjct: 229 HIVETGT 235

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 15/123 (12%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DMTTIRRSLGVCPQYN 137
           +G SG   G  TL       +++     V+SG   I  H+I+     ++R  +G+  Q N
Sbjct: 50  VGMSGG--GKSTLI------NLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDN 101

Query: 138 ALFDKLTVEEHMWF---YSQLKQVPKDLAQLEISNMIGDL--GIPHKRTSLANTLSGGMQ 192
            LF   TV+E++      +  ++V +        + I +L  G   +       LSGG +
Sbjct: 102 ILFS-DTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQK 160

Query: 193 RKL 195
           ++L
Sbjct: 161 QRL 163

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 28/166 (16%), Positives = 60/166 (36%), Gaps = 9/166 (5%)

Query: 364 DMKSAPQKSYIGYCPQFDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALG-- 421
             +       +    Q   +  R + +E++ +    +     +    V    + F  G  
Sbjct: 80  QYEHRYLHRQVAAVGQEPQVFGR-SLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLP 138

Query: 422 ----HYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAV 477
                  D     LSGG ++ ++ A AL+    ++ LD+ TS +D  ++  +   +  + 
Sbjct: 139 QGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESP 198

Query: 478 SE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYG 522
               R V+L + ++   E     +  +  G     G+   L  K G
Sbjct: 199 ERYSRSVLLITQHLSLVE-QADHILFLEGGAIREGGTHQQLMEKKG 243

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (116), Expect = 7e-07
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 281 VILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAG 340
           +ILD+ TS +D  S+  + +LL +          R+V+L T ++   +   D I  +  G
Sbjct: 173 LILDDATSALDANSQLQVEQLLYES----PERYSRSVLLITQHLSLVE-QADHILFLEGG 227

Query: 341 KLQCCGS 347
            ++  G+
Sbjct: 228 AIREGGT 234

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (100), Expect = 6e-05
 Identities = 24/178 (13%), Positives = 65/178 (36%), Gaps = 19/178 (10%)

Query: 79  LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DMTTIRRSLGVCPQYN 137
           +GP+G   G  T+       ++L  +   + G   +    +   +   + R +    Q  
Sbjct: 46  VGPNGS--GKSTVA------ALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEP 97

Query: 138 ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDL------GIPHKRTSLANTLSGGM 191
            +F   +++E++ +    K   +++    + +           G   +     + LSGG 
Sbjct: 98  QVFG-RSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQ 156

Query: 192 QRKLDNVKVWFNNKA---WIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNL 246
           ++ +   +             A S ++A + + +   L  +  R   +++ I   ++L
Sbjct: 157 RQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSL 214

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 244 MNLTHKQMALETLKKAGTSILVAVTVLFAMSFV-PASTVILDEPTSGVDPYSRRSIWELL 302
                K+         G   + A+ +LFA++   P+   +LDE  + +D  + + I   +
Sbjct: 320 ATPPLKRFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYI 379

Query: 303 IKVYYASHSLSGRTVILTTH---YMDEADLL 330
            +     H       I+ +      +++D L
Sbjct: 380 RR-----HRNPDLQFIVISLKNTMFEKSDAL 405

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.5 bits (93), Expect = 4e-04
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 439 LSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN---MEECEA 495
           L  AI     +P   LDE  + +D    + +   I R  +     I+ S      E+ +A
Sbjct: 345 LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDA 404

Query: 496 L 496
           L
Sbjct: 405 L 405

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	601
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.97
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.97
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.97
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.97
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.97
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.97
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.96
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.93
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.58
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.32
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.27
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.06
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.92
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	98.75
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	98.53
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.24
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.05
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.69
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.94
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.3
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	94.51
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	94.25
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	94.01
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	91.83
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	80.78

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.2e-51  Score=411.45  Aligned_cols=213  Identities=25%  Similarity=0.310  Sum_probs=182.3

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT  121 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~  121 (601)
                      ..+.++||+|.||+    ..||+|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|+++..
T Consensus         5 ~~I~v~nlsk~yg~----~~al~~vsl~v~~Ge~~~liGpsGa--GKSTL------l~~i~Gl~~p~sG~I~i~g~~i~~   72 (239)
T d1v43a3           5 VEVKLENLTKRFGN----FTAVNKLNLTIKDGEFLVLLGPSGC--GKTTT------LRMIAGLEEPTEGRIYFGDRDVTY   72 (239)
T ss_dssp             CCEEEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTS--SHHHH------HHHHHTSSCCSEEEEEETTEECTT
T ss_pred             CeEEEEEEEEEECC----EEEEcceeEEECCCCEEEEECCCCC--hHHHH------HHHHHcCCCCCCCEEEEcceeccc
Confidence            34669999999974    5699999999988      999999  56654      579999999999999999999965


Q ss_pred             chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhh
Q psy7365         122 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVW  201 (601)
Q Consensus       122 ~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~  201 (601)
                      ... .+++||||||++.+|+++||+||++|++..++++++++++++.++++.+||++.+++++++|||||||||+|||||
T Consensus        73 ~~~-~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL  151 (239)
T d1v43a3          73 LPP-KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAI  151 (239)
T ss_dssp             SCG-GGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHH
T ss_pred             CCc-ccceEEEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhh
Confidence            332 3568999999999999999999999999999999999999999999999999999999999999999999865543


Q ss_pred             cchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEE
Q psy7365         202 FNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTV  281 (601)
Q Consensus       202 ~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~l  281 (601)
                                                            +++                                   |++|
T Consensus       152 --------------------------------------~~~-----------------------------------P~iL  158 (239)
T d1v43a3         152 --------------------------------------VVE-----------------------------------PDVL  158 (239)
T ss_dssp             --------------------------------------TTC-----------------------------------CSEE
T ss_pred             --------------------------------------ccC-----------------------------------CCce
Confidence                                                  333                                   5899


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       282 iLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                      ||||||+||||.+++.++++|++++    +..|+|+|++|||++++.++|||+++|.+|+++..|++..
T Consensus       159 llDEPts~LD~~~~~~i~~ll~~l~----~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~e  223 (239)
T d1v43a3         159 LMDEPLSNLDAKLRVAMRAEIKKLQ----QKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTE  223 (239)
T ss_dssp             EEESTTTTSCHHHHHHHHHHHHHHH----HHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             eecCCcccCCHHHHHHHHHHHHHHH----HhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            9999999999999999999999984    2359999999999999999999999999999999987643

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.6e-51  Score=407.61  Aligned_cols=216  Identities=25%  Similarity=0.331  Sum_probs=192.6

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc-
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD-  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~-  122 (601)
                      +.++||+|.|++.+....||+|+||++.+      +|||||  |||||      .+||+|+++|++|+|.++|+++... 
T Consensus         2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGs--GKSTL------l~~i~Gl~~p~sG~I~~~g~~i~~~~   73 (240)
T d3dhwc1           2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGA--GKSTL------IRCVNLLERPTEGSVLVDGQELTTLS   73 (240)
T ss_dssp             EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTS--SHHHH------HHHHTTSSCCSEEEEEETTEEECTTC
T ss_pred             EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCC--CHHHH------HHHHcCCccccCCceEEcCeEeeeCC
Confidence            45899999998766667899999999988      999999  56654      5799999999999999999998642 


Q ss_pred             ---hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchh
Q psy7365         123 ---MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVK  199 (601)
Q Consensus       123 ---~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~  199 (601)
                         ...+|+.+|||||++.+|+.+||+||++|++.+.+++++++++++.++|+.+||++.+++++++|||||||||+|||
T Consensus        74 ~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAr  153 (240)
T d3dhwc1          74 ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIAR  153 (240)
T ss_dssp             HHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHH
T ss_pred             hhhhhhhhccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhh
Confidence               23456789999999999999999999999999999999999999999999999999999999999999999998654


Q ss_pred             hhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCc
Q psy7365         200 VWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPAS  279 (601)
Q Consensus       200 ~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  279 (601)
                      |                                      ++++                                   |+
T Consensus       154 a--------------------------------------L~~~-----------------------------------P~  160 (240)
T d3dhwc1         154 A--------------------------------------LASN-----------------------------------PK  160 (240)
T ss_dssp             H--------------------------------------HHTC-----------------------------------CS
T ss_pred             h--------------------------------------hccC-----------------------------------CC
Confidence            3                                      3333                                   58


Q ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         280 TVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       280 ~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                      +|||||||+||||.++..++++|+++.    +..|+|+|++|||++++..+|||+++|.+|+++..|++..
T Consensus       161 lLllDEPt~~LD~~~~~~i~~~l~~l~----~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~e  227 (240)
T d3dhwc1         161 VLLCDEATSALDPATTRSILELLKDIN----RRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSE  227 (240)
T ss_dssp             EEEEESGGGSSCHHHHHHHHHHHHHHH----HHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTT
T ss_pred             eEEeccccccCCHHHhhHHHHHHHHHH----hccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            999999999999999999999999984    2359999999999999999999999999999999987654

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=4.7e-51  Score=407.52  Aligned_cols=213  Identities=27%  Similarity=0.330  Sum_probs=189.0

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      .+.++||+|.||+    ..||+|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++...
T Consensus         3 ~i~v~nl~k~yg~----~~al~~vsl~i~~Ge~~~liG~sGa--GKSTl------l~~i~gl~~p~sG~I~~~g~~i~~~   70 (240)
T d1g2912           3 GVRLVDVWKVFGE----VTAVREMSLEVKDGEFMILLGPSGC--GKTTT------LRMIAGLEEPSRGQIYIGDKLVADP   70 (240)
T ss_dssp             EEEEEEEEEEETT----EEEEEEEEEEEETTCEEEEECSTTS--SHHHH------HHHHHTSSCCSEEEEEETTEEEEEG
T ss_pred             cEEEEeEEEEECC----EEEEcceeeEEcCCCEEEEECCCCC--hHHHH------HHHHhcCCCCCCCEEEECCEEeccc
Confidence            3568999999975    5599999999988      999999  56554      5799999999999999999998542


Q ss_pred             h-----HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhc
Q psy7365         123 M-----TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDN  197 (601)
Q Consensus       123 ~-----~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~  197 (601)
                      .     ...++.||||||+|.+|+++||+||++|+...++.++++.++++.++++.+||++..++++++||||||||++|
T Consensus        71 ~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~I  150 (240)
T d1g2912          71 EKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVAL  150 (240)
T ss_dssp             GGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHH
T ss_pred             chhhhcccccccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence            2     22367899999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             hhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCC
Q psy7365         198 VKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVP  277 (601)
Q Consensus       198 ~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  277 (601)
                      ||||                                      +++                                   
T Consensus       151 AraL--------------------------------------~~~-----------------------------------  157 (240)
T d1g2912         151 GRAI--------------------------------------VRK-----------------------------------  157 (240)
T ss_dssp             HHHH--------------------------------------HTC-----------------------------------
T ss_pred             HHHH--------------------------------------hcC-----------------------------------
Confidence            5443                                      343                                   


Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                      |++|||||||+||||.++..++++|+++.    +..|+|||++|||++++..+|||+++|.+|+++..|++..
T Consensus       158 P~iLllDEPt~~LD~~~~~~i~~~l~~l~----~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~e  226 (240)
T d1g2912         158 PQVFLMDEPLSNLDAKLRVRMRAELKKLQ----RQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE  226 (240)
T ss_dssp             CSEEEEECTTTTSCHHHHHHHHHHHHHHH----HHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             CCEEEecCCCcccCHHHHHHHHHHHHHHH----hccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            48999999999999999999999999984    2349999999999999999999999999999999987643

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.5e-51  Score=407.57  Aligned_cols=210  Identities=26%  Similarity=0.374  Sum_probs=147.0

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchH
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMT  124 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~  124 (601)
                      .++||+|.|+.    ..+|+|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|+++.... 
T Consensus         2 ev~nv~k~yg~----~~~l~~isl~i~~Gei~~liGpsGs--GKSTL------l~~i~Gl~~p~sG~I~i~g~~i~~~~-   68 (232)
T d2awna2           2 QLQNVTKAWGE----VVVSKDINLDIHEGEFVVFVGPSGC--GKSTL------LRMIAGLETITSGDLFIGEKRMNDTP-   68 (232)
T ss_dssp             EEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTS--SHHHH------HHHHHTSSCCSEEEEEESSSCCTTSC-
T ss_pred             EEEEEEEEECC----EEEEeeeEEEEcCCCEEEEECCCCC--hHHHH------HHHHhcCCCCCCCEEEECCEECCCCc-
Confidence            48999999964    5699999999988      999999  56654      57999999999999999999986432 


Q ss_pred             HhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcch
Q psy7365         125 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNN  204 (601)
Q Consensus       125 ~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~  204 (601)
                      ..++.||||||+|.+|+++||+||+.|+....++++++.++++.++++.+||.+..++++++|||||||||+|||||   
T Consensus        69 ~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL---  145 (232)
T d2awna2          69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTL---  145 (232)
T ss_dssp             GGGTCEEEECSSCCC---------------------CHHHHHHHHHHHHC---------------------CHHHHH---
T ss_pred             hhhceeeeeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHH---
Confidence            33578999999999999999999999999999999999999999999999999999999999999999999865543   


Q ss_pred             hhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEe
Q psy7365         205 KAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILD  284 (601)
Q Consensus       205 ~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLD  284 (601)
                                                         +++                                   |++||||
T Consensus       146 -----------------------------------~~~-----------------------------------P~illlD  155 (232)
T d2awna2         146 -----------------------------------VAE-----------------------------------PSVFLLD  155 (232)
T ss_dssp             -----------------------------------HTC-----------------------------------CSEEEEE
T ss_pred             -----------------------------------hcC-----------------------------------CCEEEEc
Confidence                                               333                                   4899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         285 EPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       285 EPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                      |||+||||.++..++++|+++.    +..|+|+|++|||++++..+|||+++|.+|+++..|++..
T Consensus       156 EPts~LD~~~~~~i~~~l~~l~----~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~e  217 (232)
T d2awna2         156 EPLSNLDAALRVQMRIEISRLH----KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE  217 (232)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHH----HHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence            9999999999999999999984    3469999999999999999999999999999999987643

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=5.5e-51  Score=406.97  Aligned_cols=215  Identities=24%  Similarity=0.315  Sum_probs=190.0

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD  122 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~  122 (601)
                      .+.++||+|.|++  +..+||+|+||++.+      +|||||  ||||     + .+||+|+++|++|+|.++|+++...
T Consensus         3 ~i~v~nlsk~y~~--g~~~aL~~vsl~i~~Ge~~~iiG~sGs--GKST-----l-l~~i~gl~~p~~G~I~~~g~~i~~~   72 (242)
T d1oxxk2           3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGA--GKTT-----F-MRIIAGLDVPSTGELYFDDRLVASN   72 (242)
T ss_dssp             CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHH--HHHH-----H-HHHHHTSSCCSEEEEEETTEEEEET
T ss_pred             EEEEEeEEEEECC--CCEEEEeceEEEECCCCEEEEECCCCC--cHHH-----H-HHHHHcCcCCCCceEEECCEEeecC
Confidence            3558999999853  357899999999988      999999  4554     4 5799999999999999999998532


Q ss_pred             ----hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhch
Q psy7365         123 ----MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNV  198 (601)
Q Consensus       123 ----~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~  198 (601)
                          ....|++||||||++.+||++||+||++|++..++++++++++++.++++.+||++..++++++|||||||||+||
T Consensus        73 ~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiA  152 (242)
T d1oxxk2          73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALA  152 (242)
T ss_dssp             TEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred             chhhcchhhccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHH
Confidence                2334678999999999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             hhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCC
Q psy7365         199 KVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPA  278 (601)
Q Consensus       199 ~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  278 (601)
                      |||+                                      ++                                   |
T Consensus       153 RaL~--------------------------------------~~-----------------------------------P  159 (242)
T d1oxxk2         153 RALV--------------------------------------KD-----------------------------------P  159 (242)
T ss_dssp             HHHT--------------------------------------TC-----------------------------------C
T ss_pred             hHHh--------------------------------------hc-----------------------------------c
Confidence            5433                                      33                                   5


Q ss_pred             cEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         279 STVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       279 ~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                      ++|||||||+||||.++..++++|+++.    ++.|+|+|++|||++++..+|||+++|.+|+++..|++..
T Consensus       160 ~llllDEPt~~LD~~~~~~i~~~i~~l~----~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~e  227 (242)
T d1oxxk2         160 SLLLLDEPFSNLDARMRDSARALVKEVQ----SRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPED  227 (242)
T ss_dssp             SEEEEESTTTTSCGGGHHHHHHHHHHHH----HHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             cceeecCCccCCCHHHHHHHHHHHHHHH----hccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            8999999999999999999999999984    2359999999999999999999999999999999987643

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=1e-49  Score=394.93  Aligned_cols=207  Identities=26%  Similarity=0.382  Sum_probs=182.3

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM  123 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~  123 (601)
                      +.++||+|.|++     .+|+|+||++.+      +|||||  ||||     + .++|+|+++|++|+|.++|+++....
T Consensus         2 i~v~nlsk~y~~-----~aL~~vs~~i~~Ge~~~liGpsGa--GKST-----l-l~~l~Gl~~p~sG~I~~~G~~i~~~~   68 (229)
T d3d31a2           2 IEIESLSRKWKN-----FSLDNLSLKVESGEYFVILGPTGA--GKTL-----F-LELIAGFHVPDSGRILLDGKDVTDLS   68 (229)
T ss_dssp             EEEEEEEEECSS-----CEEEEEEEEECTTCEEEEECCCTH--HHHH-----H-HHHHHTSSCCSEEEEEETTEECTTSC
T ss_pred             EEEEEEEEEeCC-----EEEeeeEEEECCCCEEEEECCCCC--cHHH-----H-HHHHhcCcCCCCCEEEEccEeccccc
Confidence            458999999964     389999999988      999999  4554     4 57999999999999999999996533


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcc
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFN  203 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~  203 (601)
                       ..++.+|||||++.+|+++||+||++|+....+.+..   +++.++++.+|+.+..++++++|||||||||+||||++ 
T Consensus        69 -~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~-  143 (229)
T d3d31a2          69 -PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALV-  143 (229)
T ss_dssp             -HHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTT-
T ss_pred             -hhHhcceeeccccccCccccHHHHHHHHHhhccccHH---HHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhh-
Confidence             2366899999999999999999999999999888653   47899999999999999999999999999998655433 


Q ss_pred             hhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEE
Q psy7365         204 NKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVIL  283 (601)
Q Consensus       204 ~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liL  283 (601)
                                                           ++                                   |++|||
T Consensus       144 -------------------------------------~~-----------------------------------P~iLll  151 (229)
T d3d31a2         144 -------------------------------------TN-----------------------------------PKILLL  151 (229)
T ss_dssp             -------------------------------------SC-----------------------------------CSEEEE
T ss_pred             -------------------------------------cc-----------------------------------CCceee
Confidence                                                 33                                   589999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       284 DEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                      ||||+||||.++..++++|+++.    +..|.|||++|||++++..+|||+++|.+|++++.|++..
T Consensus       152 DEPts~LD~~~~~~i~~~l~~l~----~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~e  214 (229)
T d3d31a2         152 DEPLSALDPRTQENAREMLSVLH----KKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEE  214 (229)
T ss_dssp             ESSSTTSCHHHHHHHHHHHHHHH----HHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHH
T ss_pred             cCCCcCCCHHHHHHHHHHHHHHH----hcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99999999999999999999984    3469999999999999999999999999999999997654

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=4.2e-49  Score=391.25  Aligned_cols=212  Identities=20%  Similarity=0.268  Sum_probs=182.7

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc-
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD-  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~-  122 (601)
                      +.++||+|.|+......+||+|+||++.+      +|||||  |||||      .+||+|+++|++|+|.++|+++... 
T Consensus         2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGs--GKSTL------l~~i~gl~~p~sG~I~~~g~~i~~~~   73 (230)
T d1l2ta_           2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGS--GKSTM------LNIIGCLDKPTEGEVYIDNIKTNDLD   73 (230)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTS--SHHHH------HHHHTTSSCCSEEEEEETTEECTTCC
T ss_pred             EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCC--Ccchh------hHhccCCCCCCcceeEECCEEcCcCC
Confidence            45899999998766667899999999988      999999  56654      5799999999999999999999652 


Q ss_pred             hH---H-hcccEEEEccCCCCCCCCCHHHHHHHhHhhc---CCChHHHHHHHHHHHHHcCCCc-ccCCccccCChHHHhh
Q psy7365         123 MT---T-IRRSLGVCPQYNALFDKLTVEEHMWFYSQLK---QVPKDLAQLEISNMIGDLGIPH-KRTSLANTLSGGMQRK  194 (601)
Q Consensus       123 ~~---~-~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qr  194 (601)
                      ..   . .++.||||||+|.+|+++||+||++|+....   +.+.++..+++.++++.+||.+ ..+++|.+||||||||
T Consensus        74 ~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQR  153 (230)
T d1l2ta_          74 DDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQR  153 (230)
T ss_dssp             HHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHH
T ss_pred             hhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHH
Confidence            22   2 2457999999999999999999999988754   4567788889999999999987 5799999999999999


Q ss_pred             hhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhc
Q psy7365         195 LDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMS  274 (601)
Q Consensus       195 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  274 (601)
                      |+||||+                                      +++                                
T Consensus       154 vaIAraL--------------------------------------~~~--------------------------------  163 (230)
T d1l2ta_         154 VAIARAL--------------------------------------ANN--------------------------------  163 (230)
T ss_dssp             HHHHHHH--------------------------------------TTC--------------------------------
T ss_pred             HHHHhhh--------------------------------------hcC--------------------------------
Confidence            9865443                                      333                                


Q ss_pred             cCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         275 FVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       275 ~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                         |++|||||||+||||.++..++++|+++.    +..|+|+|++|||++++ ++|||+++|.+|+|+.+++
T Consensus       164 ---P~lLllDEPTs~LD~~~~~~i~~~l~~l~----~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~~g~  228 (230)
T d1l2ta_         164 ---PPIILADQPTGALDSKTGEKIMQLLKKLN----EEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEK  228 (230)
T ss_dssp             ---CSEEEEESTTTTSCHHHHHHHHHHHHHHH----HTTCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred             ---CCEEEecCCccccCHHHHHHHHHHHHHHH----HhhCCEEEEECCCHHHH-HhCCEEEEEECCEEEEecc
Confidence               58999999999999999999999999984    34699999999999987 6999999999999988764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4e-47  Score=379.72  Aligned_cols=213  Identities=24%  Similarity=0.355  Sum_probs=192.4

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM  123 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~  123 (601)
                      +.++||+|.||+.    ++|+|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|+++....
T Consensus         3 I~v~nl~k~yg~~----~vl~~vs~~v~~Gei~glvG~nGa--GKSTL------l~~l~G~~~p~~G~i~i~G~~i~~~~   70 (238)
T d1vpla_           3 VVVKDLRKRIGKK----EILKGISFEIEEGEIFGLIGPNGA--GKTTT------LRIISTLIKPSSGIVTVFGKNVVEEP   70 (238)
T ss_dssp             EEEEEEEEEETTE----EEEEEEEEEECTTCEEEEECCTTS--SHHHH------HHHHTTSSCCSEEEEEETTEETTTCH
T ss_pred             EEEEeEEEEECCE----EEEccceeEEcCCCEEEEECCCCC--CHHHH------HHHHhcCCCCCCCEEEECcEecccCh
Confidence            3489999999765    499999999988      999999  56665      68999999999999999999998777


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcc
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFN  203 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~  203 (601)
                      ...++.+|||||.+.+|+++|+.||+.|+...++.+.++.+++++++++.+++.+..++++++||||||||+++||||  
T Consensus        71 ~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al--  148 (238)
T d1vpla_          71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARAL--  148 (238)
T ss_dssp             HHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHH--
T ss_pred             HHHHhhEeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHH--
Confidence            788889999999999999999999999999999999998999999999999999999999999999999999865433  


Q ss_pred             hhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEE
Q psy7365         204 NKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVIL  283 (601)
Q Consensus       204 ~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liL  283 (601)
                                                          +++                                   |+++||
T Consensus       149 ------------------------------------~~~-----------------------------------p~illL  157 (238)
T d1vpla_         149 ------------------------------------MVN-----------------------------------PRLAIL  157 (238)
T ss_dssp             ------------------------------------TTC-----------------------------------CSEEEE
T ss_pred             ------------------------------------hcC-----------------------------------CCEEEe
Confidence                                                333                                   589999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccccc
Q psy7365         284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  352 (601)
Q Consensus       284 DEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk  352 (601)
                      ||||+||||.+++.++++|+++.     .+|+|||++||+++++..+|||+++|.+|+++..|++..+.
T Consensus       158 DEPt~gLD~~~~~~i~~~i~~~~-----~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~  221 (238)
T d1vpla_         158 DEPTSGLDVLNAREVRKILKQAS-----QEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELK  221 (238)
T ss_dssp             ESTTTTCCHHHHHHHHHHHHHHH-----HTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHH-----hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            99999999999999999999973     46999999999999999999999999999999998775443

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=2.7e-47  Score=385.13  Aligned_cols=211  Identities=21%  Similarity=0.284  Sum_probs=183.9

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCc-
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTD-  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~-  122 (601)
                      ..++||+|.||+    ..||+||||++.+      +|||||  |||||      .++|+|+++|++|+|.++|+++... 
T Consensus         3 Lev~nl~k~yg~----~~al~~vs~~i~~GEi~~iiG~sGs--GKSTL------l~~i~Gl~~p~~G~I~~~G~~i~~~~   70 (258)
T d1b0ua_           3 LHVIDLHKRYGG----HEVLKGVSLQARAGDVISIIGSSGS--GKSTF------LRCINFLEKPSEGAIIVNGQNINLVR   70 (258)
T ss_dssp             EEEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTS--SHHHH------HHHHTTSSCCSEEEEEETTEECCEEE
T ss_pred             EEEEEEEEEECC----EEEEcceeeEEcCCCEEEEECCCCC--cHHHH------HHHHHcCccCCCCCEEECCEEeccCC
Confidence            358999999964    4699999999988      999999  56654      5799999999999999999998521 


Q ss_pred             -------------hHHhcccEEEEccCCCCCCCCCHHHHHHHhH-hhcCCChHHHHHHHHHHHHHcCCCcc-cCCccccC
Q psy7365         123 -------------MTTIRRSLGVCPQYNALFDKLTVEEHMWFYS-QLKQVPKDLAQLEISNMIGDLGIPHK-RTSLANTL  187 (601)
Q Consensus       123 -------------~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~L  187 (601)
                                   ....++++|||||+|.+|+.+||.||+.|+. ...+.++.+.++++.++++.+||.+. .+++|.+|
T Consensus        71 ~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~L  150 (258)
T d1b0ua_          71 DKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHL  150 (258)
T ss_dssp             CTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGS
T ss_pred             ccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccc
Confidence                         2245678999999999999999999999874 56788888999999999999999874 68899999


Q ss_pred             ChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHH
Q psy7365         188 SGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAV  267 (601)
Q Consensus       188 SgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~  267 (601)
                      ||||||||+|||||                                      +.+                         
T Consensus       151 SGG~~QRv~iAraL--------------------------------------~~~-------------------------  167 (258)
T d1b0ua_         151 SGGQQQRVSIARAL--------------------------------------AME-------------------------  167 (258)
T ss_dssp             CHHHHHHHHHHHHH--------------------------------------HTC-------------------------
T ss_pred             cHHHHHHHHHHHHH--------------------------------------hcC-------------------------
Confidence            99999999865443                                      233                         


Q ss_pred             HHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccC
Q psy7365         268 TVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  347 (601)
Q Consensus       268 ~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~  347 (601)
                                |++|||||||+||||.++..++++|+++.     .+|+|||++|||++++..+||||++|.+|+++..|+
T Consensus       168 ----------P~llilDEPT~gLD~~~~~~i~~ll~~l~-----~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~  232 (258)
T d1b0ua_         168 ----------PDVLLFDEPTSALDPELVGEVLRIMQQLA-----EEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD  232 (258)
T ss_dssp             ----------CSEEEEESTTTTSCHHHHHHHHHHHHHHH-----HTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred             ----------CCEEEeccccccCCHHHHHHHHHhhhhhc-----ccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence                      58999999999999999999999999983     358999999999999999999999999999999987


Q ss_pred             ccc
Q psy7365         348 SVF  350 (601)
Q Consensus       348 ~~l  350 (601)
                      +..
T Consensus       233 ~~e  235 (258)
T d1b0ua_         233 PEQ  235 (258)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=4.1e-47  Score=380.18  Aligned_cols=214  Identities=20%  Similarity=0.289  Sum_probs=183.1

Q ss_pred             cchhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccC
Q psy7365          46 GAYVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDI  119 (601)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~  119 (601)
                      ..++..++||+|.||+    ..||+|+||++.+      +|||||  |||||      .++|+|+++|++|+|+++|+++
T Consensus         3 sd~~Lev~~l~k~yg~----~~al~~vs~~i~~Gei~~liGpnGa--GKSTl------~~~i~Gl~~p~~G~I~~~G~~i   70 (240)
T d1ji0a_           3 SDIVLEVQSLHVYYGA----IHAIKGIDLKVPRGQIVTLIGANGA--GKTTT------LSAIAGLVRAQKGKIIFNGQDI   70 (240)
T ss_dssp             CSEEEEEEEEEEEETT----EEEEEEEEEEEETTCEEEEECSTTS--SHHHH------HHHHTTSSCCSEEEEEETTEEC
T ss_pred             cceEEEEeeEEEEECC----EEEEeeeeEEECCCCEEEEECCCCC--cHHHH------HHHHhCCCCCCccEEEeccccc
Confidence            3456779999999975    4599999999988      999999  56654      5799999999999999999999


Q ss_pred             CCch--HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHc-CCCcccCCccccCChHHHhhhh
Q psy7365         120 RTDM--TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDL-GIPHKRTSLANTLSGGMQRKLD  196 (601)
Q Consensus       120 ~~~~--~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~LSgG~~qr~~  196 (601)
                      ....  ...|.+++|+||++.+|+++||+||+.++..... +++..+++++++++.+ ++.+..++++++|||||||||+
T Consensus        71 ~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~  149 (240)
T d1ji0a_          71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK-DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLA  149 (240)
T ss_dssp             TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC-CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHH
T ss_pred             ccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHH
Confidence            7532  2335579999999999999999999988775543 4555667778888887 7899999999999999999998


Q ss_pred             chhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccC
Q psy7365         197 NVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFV  276 (601)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  276 (601)
                      ||||                                      ++++                                  
T Consensus       150 iAra--------------------------------------L~~~----------------------------------  157 (240)
T d1ji0a_         150 IGRA--------------------------------------LMSR----------------------------------  157 (240)
T ss_dssp             HHHH--------------------------------------HTTC----------------------------------
T ss_pred             HHHH--------------------------------------HHhC----------------------------------
Confidence            6543                                      3333                                  


Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                       |++|||||||+||||.++.+++++|++++     .+|+|||++|||++++.++|||+++|.+|++++.|++..
T Consensus       158 -P~lLllDEPt~gLD~~~~~~i~~~i~~l~-----~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~e  225 (240)
T d1ji0a_         158 -PKLLMMDEPSLGLAPILVSEVFEVIQKIN-----QEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASE  225 (240)
T ss_dssp             -CSEEEEECTTTTCCHHHHHHHHHHHHHHH-----HTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred             -CCEeeecCCCcCCCHHHHHHHHHHHHHHH-----hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence             58999999999999999999999999983     359999999999999999999999999999999987644

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=5.7e-47  Score=377.10  Aligned_cols=203  Identities=24%  Similarity=0.358  Sum_probs=175.6

Q ss_pred             ccccccccCCCccceeecceEEeec-----ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcc
Q psy7365          54 SLSENRDKLGIDSYGISDTSLEEQP-----LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRR  128 (601)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~  128 (601)
                      ++.|.||...     + |+||++..     +|||||  |||||      .++|+|+++|++|+|.++|.++.... ..++
T Consensus         6 ~~~k~~g~~~-----~-~vs~~~~~e~~~liGpnGa--GKSTl------l~~i~Gl~~p~~G~I~~~G~~i~~~~-~~~r   70 (240)
T d2onka1           6 RAEKRLGNFR-----L-NVDFEMGRDYCVLLGPTGA--GKSVF------LELIAGIVKPDRGEVRLNGADITPLP-PERR   70 (240)
T ss_dssp             EEEEEETTEE-----E-EEEEEECSSEEEEECCTTS--SHHHH------HHHHHTSSCCSEEEEEETTEECTTSC-TTTS
T ss_pred             EEEEEECCEE-----E-EEEEEeCCEEEEEECCCCC--hHHHH------HHHHHcCCCCCceEEEECCEECCcCC-HHHc
Confidence            4567777654     3 79999864     999999  56654      57999999999999999999996532 3367


Q ss_pred             cEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcchhhHH
Q psy7365         129 SLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFNNKAWI  208 (601)
Q Consensus       129 ~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~  208 (601)
                      +||||||++.+|+++||+||+.|++.  +.++.+.++++.++++.+||++.+++++++|||||||||+|||||       
T Consensus        71 ~ig~v~Q~~~l~~~ltV~enl~~~l~--~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral-------  141 (240)
T d2onka1          71 GIGFVPQDYALFPHLSVYRNIAYGLR--NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARAL-------  141 (240)
T ss_dssp             CCBCCCSSCCCCTTSCHHHHHHTTCT--TSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHH-------
T ss_pred             CceeeccchhhcccchhhHhhhhhhc--ccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHH-------
Confidence            89999999999999999999999754  567788888999999999999999999999999999999865543       


Q ss_pred             HHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCC
Q psy7365         209 AAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTS  288 (601)
Q Consensus       209 a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPts  288 (601)
                                                     +++                                   |++|||||||+
T Consensus       142 -------------------------------~~~-----------------------------------P~illlDEPts  155 (240)
T d2onka1         142 -------------------------------VIQ-----------------------------------PRLLLLDEPLS  155 (240)
T ss_dssp             -------------------------------TTC-----------------------------------CSSBEEESTTS
T ss_pred             -------------------------------hcc-----------------------------------CCceEecCccc
Confidence                                           343                                   48999999999


Q ss_pred             CCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         289 GVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       289 gLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                      ||||.++..+++.|+++.    +..|+|+|++|||++++..+|||+++|.+|++++.|++..
T Consensus       156 ~LD~~~~~~i~~~i~~l~----~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~e  213 (240)
T d2onka1         156 AVDLKTKGVLMEELRFVQ----REFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKE  213 (240)
T ss_dssp             SCCHHHHHHHHHHHHHHH----HHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             cCCHHHHHHHHHHHHHHH----HhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHH
Confidence            999999999999999984    2358999999999999999999999999999999987643

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.9e-46  Score=378.50  Aligned_cols=212  Identities=18%  Similarity=0.257  Sum_probs=181.7

Q ss_pred             hhhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC
Q psy7365          48 YVSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT  121 (601)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~  121 (601)
                      .+..++||+|.||+    ..||+||||++.+      +|||||  |||||      .++|+|+++|++|+|.++|+++..
T Consensus         3 ~iL~v~nlsk~yg~----~~aL~~vs~~v~~Gei~~liG~nGa--GKSTL------l~~i~Gl~~p~~G~I~~~g~~i~~   70 (254)
T d1g6ha_           3 EILRTENIVKYFGE----FKALDGVSISVNKGDVTLIIGPNGS--GKSTL------INVITGFLKADEGRVYFENKDITN   70 (254)
T ss_dssp             EEEEEEEEEEEETT----EEEEEEECCEEETTCEEEEECSTTS--SHHHH------HHHHTTSSCCSEEEEEETTEECTT
T ss_pred             ceEEEEEEEEEECC----eEEEcceEEEECCCCEEEEECCCCC--cHHHH------HHHHHCCCcCCCcEEEECCEeccc
Confidence            35679999999975    4599999999988      999999  56654      579999999999999999999964


Q ss_pred             -c-hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcC-------------CChHHHHHHHHHHHHHcCCCcccCCcccc
Q psy7365         122 -D-MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ-------------VPKDLAQLEISNMIGDLGIPHKRTSLANT  186 (601)
Q Consensus       122 -~-~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~-------------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~  186 (601)
                       + ....+.+|||+||+|.+|+++||+||+.++....+             ...++..+++.++++.+++.+..++++.+
T Consensus        71 ~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  150 (254)
T d1g6ha_          71 KEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE  150 (254)
T ss_dssp             CCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred             hhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhh
Confidence             2 33345679999999999999999999988643221             23345667888999999999999999999


Q ss_pred             CChHHHhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHH
Q psy7365         187 LSGGMQRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVA  266 (601)
Q Consensus       187 LSgG~~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a  266 (601)
                      |||||||||++||||                                      +++                        
T Consensus       151 LSgG~~Qrv~iAraL--------------------------------------~~~------------------------  168 (254)
T d1g6ha_         151 LSGGQMKLVEIGRAL--------------------------------------MTN------------------------  168 (254)
T ss_dssp             SCHHHHHHHHHHHHH--------------------------------------HTC------------------------
T ss_pred             CCcHHHHHHHHHHHH--------------------------------------HhC------------------------
Confidence            999999999865433                                      333                        


Q ss_pred             HHHHHhhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCcccccc
Q psy7365         267 VTVLFAMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  346 (601)
Q Consensus       267 ~~~~~~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G  346 (601)
                                 |++|||||||+||||.++..++++|++++     .+|+|||++|||++++..+||||++|.+|++++.|
T Consensus       169 -----------P~llilDEPt~gLD~~~~~~i~~~i~~l~-----~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g  232 (254)
T d1g6ha_         169 -----------PKMIVMDEPIAGVAPGLAHDIFNHVLELK-----AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG  232 (254)
T ss_dssp             -----------CSEEEEESTTTTCCHHHHHHHHHHHHHHH-----HTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEE
T ss_pred             -----------cCchhhcCCcccCCHHHHHHHHHHHHHHH-----HCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEe
Confidence                       58999999999999999999999999983     46999999999999999999999999999999988


Q ss_pred             Ccc
Q psy7365         347 SSV  349 (601)
Q Consensus       347 ~~~  349 (601)
                      ++.
T Consensus       233 ~~~  235 (254)
T d1g6ha_         233 RGE  235 (254)
T ss_dssp             ESH
T ss_pred             cHH
Confidence            764

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=8e-42  Score=340.11  Aligned_cols=204  Identities=19%  Similarity=0.310  Sum_probs=172.3

Q ss_pred             ccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc-------cccccccccccccccCC-cccccccccCCCCcc
Q psy7365         311 SLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF-------LKNSFARGYYLSLDMKS-APQKSYIGYCPQFDA  382 (601)
Q Consensus       311 ~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l-------Lk~~~g~g~~igld~~~-~~~~~~ig~v~Q~~~  382 (601)
                      ++.+..++   +++++...-++.+++++...   +|++++       .+++.|+.++.+.++.. .+.+++||||||++.
T Consensus        15 ~yg~~~al---~~vsl~v~~Ge~~~liGpsG---aGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~   88 (239)
T d1v43a3          15 RFGNFTAV---NKLNLTIKDGEFLVLLGPSG---CGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYA   88 (239)
T ss_dssp             EETTEEEE---EEEEEEECTTCEEEEECCTT---SSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC---
T ss_pred             EECCEEEE---cceeEEECCCCEEEEECCCC---ChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeechh
Confidence            34455555   89999999999999998522   555543       34556666666666543 234567999999999


Q ss_pred             cCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCC
Q psy7365         383 LNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD  462 (601)
Q Consensus       383 l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD  462 (601)
                      +|+.+||+||+.|+...++.++++.+++++++|+.++|.++.++++.+|||||||||+|||||+++|++|||||||+|||
T Consensus        89 l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD  168 (239)
T d1v43a3          89 VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD  168 (239)
T ss_dssp             ---CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred             hcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCC
Confidence            99999999999999988999988899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         463 PGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       463 ~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      |.++.+++++|++++++ |+|||++|||++++.++||||++|++|+|++.|+|+++.++
T Consensus       169 ~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~  227 (239)
T d1v43a3         169 AKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR  227 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            99999999999999765 99999999999999999999999999999999999999765

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-42  Score=345.55  Aligned_cols=213  Identities=19%  Similarity=0.290  Sum_probs=170.0

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++||++.|++. .+.++|+|+||++.+      +|||||  |||||      .++|+|+++|++|+|+++|.++.. +
T Consensus        12 I~~~nvsf~Y~~~-~~~~vL~~isl~i~~Ge~vaivG~sGs--GKSTL------l~li~gl~~p~~G~I~i~g~~i~~~~   82 (251)
T d1jj7a_          12 VQFQDVSFAYPNR-PDVLVLQGLTFTLRPGEVTALVGPNGS--GKSTV------AALLQNLYQPTGGQLLLDGKPLPQYE   82 (251)
T ss_dssp             EEEEEEEECCTTS-TTCCSEEEEEEEECTTCEEEEECSTTS--SHHHH------HHHHTTSSCCSEEEEEETTEEGGGBC
T ss_pred             EEEEEEEEECCCC-CCCEeEeceEEEEcCCCEEEEECCCCC--cHHHH------HHHHhcccCCCcCEEEECCEecchhh
Confidence            5699999998532 356799999999988      999999  56655      579999999999999999999865 4


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHH-----HHHHHHHHHc--CCCcccCCccccCChHHHhhh
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQ-----LEISNMIGDL--GIPHKRTSLANTLSGGMQRKL  195 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qr~  195 (601)
                      ....|+.+|||||+|.+|+ .||+||+.|+..... ......     ....+.++.+  |+....++.+.+||||||||+
T Consensus        83 ~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRv  160 (251)
T d1jj7a_          83 HRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQKP-TMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAV  160 (251)
T ss_dssp             HHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSSCC-CHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHH
T ss_pred             hHHHHHHhhhccccccccC-cchhhhhhhhhcccc-hHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEE
Confidence            5567889999999999884 699999988743221 111111     1223455655  566667888999999999999


Q ss_pred             hchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhcc
Q psy7365         196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSF  275 (601)
Q Consensus       196 ~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  275 (601)
                      +||||++                                      ++                                 
T Consensus       161 aiARal~--------------------------------------~~---------------------------------  169 (251)
T d1jj7a_         161 ALARALI--------------------------------------RK---------------------------------  169 (251)
T ss_dssp             HHHHHHT--------------------------------------TC---------------------------------
T ss_pred             EEeeccc--------------------------------------cC---------------------------------
Confidence            8655433                                      33                                 


Q ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc
Q psy7365         276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  351 (601)
Q Consensus       276 ~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL  351 (601)
                        |+++|||||||+||+.+...+++.|.++.    +..|+|+|++|||++.+ ..||||++|.+|+++..|++..+
T Consensus       170 --p~ililDEpTs~LD~~~~~~i~~~l~~l~----~~~~~Tvi~itH~l~~~-~~aDrI~vl~~G~iv~~Gt~~eL  238 (251)
T d1jj7a_         170 --PCVLILDDATSALDANSQLQVEQLLYESP----ERYSRSVLLITQHLSLV-EQADHILFLEGGAIREGGTHQQL  238 (251)
T ss_dssp             --CSEEEEESTTTTCCHHHHHHHHHHHHTCG----GGGGCEEEEECSCHHHH-HTCSEEEEEETTEEEEEECHHHH
T ss_pred             --CcEEEecCcCcccChhhHHHHHHHHHHHh----hhcCCEEEEEeCCHHHH-HhCCEEEEEECCEEEEECCHHHH
Confidence              48999999999999999999999998873    23589999999999877 46999999999999999976543

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=2.9e-41  Score=336.49  Aligned_cols=197  Identities=21%  Similarity=0.324  Sum_probs=173.8

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCC-------cccccccccCCCCcccCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKS-------APQKSYIGYCPQFDALNDRL  387 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~-------~~~~~~ig~v~Q~~~l~~~l  387 (601)
                      +++++-.+-++.+++++...   +|+++++       +++.|+.++.+.++..       ...+++||||||++.+|+.+
T Consensus        20 ~~vsl~i~~Ge~~~liG~sG---aGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~l   96 (240)
T d1g2912          20 REMSLEVKDGEFMILLGPSG---CGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHM   96 (240)
T ss_dssp             EEEEEEEETTCEEEEECSTT---SSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTS
T ss_pred             cceeeEEcCCCEEEEECCCC---ChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcchh
Confidence            88999999999999997522   4555433       3445555555544321       12356799999999999999


Q ss_pred             CHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHH
Q psy7365         388 TPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARR  467 (601)
Q Consensus       388 Tv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~  467 (601)
                      ||+||+.|...+++.++++.++++.++++.++|.+..+++|.+|||||||||+|||||+++|++|||||||+||||.++.
T Consensus        97 tV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~  176 (240)
T d1g2912          97 TVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV  176 (240)
T ss_dssp             CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHH
T ss_pred             hhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHH
Confidence            99999999999999998899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHh
Q psy7365         468 FLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKY  521 (601)
Q Consensus       468 ~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~  521 (601)
                      .++++|+++.++ |+|||++|||++++..+||||++|++|+|++.|+++++..+.
T Consensus       177 ~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~P  231 (240)
T d1g2912         177 RMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKP  231 (240)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             HHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence            999999999766 999999999999999999999999999999999999997653

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-41  Score=339.62  Aligned_cols=207  Identities=24%  Similarity=0.327  Sum_probs=164.2

Q ss_pred             hhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-ch
Q psy7365          51 LFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-DM  123 (601)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~~  123 (601)
                      .|+||++.|.  +...++|+|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. +.
T Consensus         3 ~~~nvsf~Y~--~~~~~vL~~isl~i~~Ge~vaIvG~sGs--GKSTL------l~ll~gl~~p~~G~I~i~g~~i~~~~~   72 (241)
T d2pmka1           3 TFRNIRFRYK--PDSPVILDNINLSIKQGEVIGIVGRSGS--GKSTL------TKLIQRFYIPENGQVLIDGHDLALADP   72 (241)
T ss_dssp             EEEEEEEESS--TTSCEEEEEEEEEEETTCEEEEECSTTS--SHHHH------HHHHTTSSCCSEEEEEETTEETTTSCH
T ss_pred             EEEEEEEEeC--CCCcceEeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHHhcCCCCCCEEEECCEEecccch
Confidence            4899999974  3456799999999988      999999  56655      579999999999999999999975 46


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHH-----HHHHHHc--CCCcccCCccccCChHHHhhhh
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEI-----SNMIGDL--GIPHKRTSLANTLSGGMQRKLD  196 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LSgG~~qr~~  196 (601)
                      ..+|+.+|||||+|.+| ..||+||+.|+...  .+.++..+..     .+.++.+  |+....++.+.+|||||||||+
T Consensus        73 ~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRva  149 (241)
T d2pmka1          73 NWLRRQVGVVLQDNVLL-NRSIIDNISLANPG--MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIA  149 (241)
T ss_dssp             HHHHHHEEEECSSCCCT-TSBHHHHHCTTSTT--CCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHH
T ss_pred             hhhhceEEEEecccccC-CccccccccccCcc--ccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHh
Confidence            67888999999999887 56999999886543  2333222211     1222222  2233456678899999999998


Q ss_pred             chhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccC
Q psy7365         197 NVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFV  276 (601)
Q Consensus       197 ~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  276 (601)
                      |||||+                                      .+                                  
T Consensus       150 lARal~--------------------------------------~~----------------------------------  157 (241)
T d2pmka1         150 IARALV--------------------------------------NN----------------------------------  157 (241)
T ss_dssp             HHHHHT--------------------------------------TC----------------------------------
T ss_pred             hhhhhh--------------------------------------cc----------------------------------
Confidence            655433                                      32                                  


Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                       |++||||||||+||+.+.+.+++.|+++.      +|+|+|++||+++.+ ..||||++|++|+|+..|++..
T Consensus       158 -p~ililDEpts~LD~~~~~~i~~~l~~l~------~~~Tvi~itH~l~~~-~~~D~i~vl~~G~Iv~~G~~~e  223 (241)
T d2pmka1         158 -PKILIFDEATSALDYESEHVIMRNMHKIC------KGRTVIIIAHRLSTV-KNADRIIVMEKGKIVEQGKHKE  223 (241)
T ss_dssp             -CSEEEECCCCSCCCHHHHHHHHHHHHHHH------TTSEEEEECSSGGGG-TTSSEEEEEETTEEEEEECHHH
T ss_pred             -cchhhhhCCccccCHHHHHHHHHHHHHHh------CCCEEEEEECCHHHH-HhCCEEEEEECCEEEEECCHHH
Confidence             58999999999999999999999999872      489999999999877 5799999999999999987643

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.8e-41  Score=336.32  Aligned_cols=204  Identities=23%  Similarity=0.340  Sum_probs=137.9

Q ss_pred             ccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCc-ccccccccCCCCcc
Q psy7365         311 SLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSA-PQKSYIGYCPQFDA  382 (601)
Q Consensus       311 ~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~-~~~~~ig~v~Q~~~  382 (601)
                      ++.+.+++   +++++...-++.+++++...   +|+++++       +++.|..++.+.++... +.+++||||||++.
T Consensus         9 ~yg~~~~l---~~isl~i~~Gei~~liGpsG---sGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~   82 (232)
T d2awna2           9 AWGEVVVS---KDINLDIHEGEFVVFVGPSG---CGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYA   82 (232)
T ss_dssp             EETTEEEE---EEEEEEECTTCEEEEECCTT---SSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCC
T ss_pred             EECCEEEE---eeeEEEEcCCCEEEEECCCC---ChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccccc
Confidence            44455555   89999999999999997522   4555443       44556666666665433 34577999999999


Q ss_pred             cCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCC
Q psy7365         383 LNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMD  462 (601)
Q Consensus       383 l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD  462 (601)
                      +|+.+||+||+.|+...++.++++.++++.++++.++|.+..++++.+|||||||||+|||||+++|++|||||||+|||
T Consensus        83 l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD  162 (232)
T d2awna2          83 LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD  162 (232)
T ss_dssp             C---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTTTTSC
T ss_pred             cccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence            99999999999999888888888888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh-CCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         463 PGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       463 ~~~~~~i~~lL~~l~~-~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      |.+++++++.|+++.+ .|+|||++|||++++..+||||++|++|+|++.|+|+++.+.
T Consensus       163 ~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~  221 (232)
T d2awna2         163 AALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY  221 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence            9999999999999864 599999999999999999999999999999999999999764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=1.1e-40  Score=332.18  Aligned_cols=196  Identities=23%  Similarity=0.329  Sum_probs=173.1

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCC------cccccccccCCCCcccCCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKS------APQKSYIGYCPQFDALNDRLT  388 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~------~~~~~~ig~v~Q~~~l~~~lT  388 (601)
                      +++++-.+-++.+++++...   +|+++++       +++.|+.++.+.++..      ...+++||||||++.+|+.+|
T Consensus        22 ~~vsl~i~~Ge~~~iiG~sG---sGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~lt   98 (242)
T d1oxxk2          22 DNVNINIENGERFGILGPSG---AGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLT   98 (242)
T ss_dssp             EEEEEEECTTCEEEEECSCH---HHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSC
T ss_pred             eceEEEECCCCEEEEECCCC---CcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEecccccccccc
Confidence            88999999999999998532   5555443       3445555555544422      223567999999999999999


Q ss_pred             HHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHH
Q psy7365         389 PREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRF  468 (601)
Q Consensus       389 v~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~  468 (601)
                      |+||+.|....++.++++.++++.++++.++|.+..+++|.+|||||||||+|||||+++|++|||||||+||||.++.+
T Consensus        99 v~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~  178 (242)
T d1oxxk2          99 AFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS  178 (242)
T ss_dssp             HHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHH
T ss_pred             HHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHH
Confidence            99999999888899988889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         469 LWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       469 i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      ++++|+++.++ |+|||++|||++++.++||||++|++|+|++.|+|+++.+.
T Consensus       179 i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~  231 (242)
T d1oxxk2         179 ARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN  231 (242)
T ss_dssp             HHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            99999999665 99999999999999999999999999999999999999764

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=2.2e-41  Score=338.86  Aligned_cols=204  Identities=21%  Similarity=0.283  Sum_probs=161.6

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      ++++||++.|++   ..++|+|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. +
T Consensus         2 le~knvsf~Y~~---~~~vL~~isl~i~~Ge~vaivG~sGs--GKSTL------l~ll~gl~~p~~G~I~i~g~~i~~~~   70 (242)
T d1mv5a_           2 LSARHVDFAYDD---SEQILRDISFEAQPNSIIAFAGPSGG--GKSTI------FSLLERFYQPTAGEITIDGQPIDNIS   70 (242)
T ss_dssp             EEEEEEEECSSS---SSCSEEEEEEEECTTEEEEEECCTTS--SHHHH------HHHHTTSSCCSBSCEEETTEESTTTS
T ss_pred             EEEEEEEEECCC---CCceeeeeEEEEcCCCEEEEECCCCC--CHHHH------HHHHHHhhCCCCCEEEECCEEecccc
Confidence            458999999853   34699999999988      999999  56654      579999999999999999999975 4


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCccccCChHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHK-----------RTSLANTLSGGM  191 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~  191 (601)
                      ...+|+.||||||+|.+|+. |++||+.++.... .+...    +.+.++..++...           ....+.+|||||
T Consensus        71 ~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGq  144 (242)
T d1mv5a_          71 LENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGD-YTDED----LWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQ  144 (242)
T ss_dssp             CSCCTTTCCEECCSSCCCCE-EHHHHTTSCTTSC-SCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHH
T ss_pred             HHHHHhheEEEccccccCCc-chhhheecccccc-cchhh----HHHHHHHHHhhhhhccCcccccccccCCCCCCCHHH
Confidence            45678899999999999876 9999998764322 22222    2233333333221           233456799999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||+++||||+                                      .+                             
T Consensus       145 kQRv~iARal~--------------------------------------~~-----------------------------  157 (242)
T d1mv5a_         145 RQRLAIARAFL--------------------------------------RN-----------------------------  157 (242)
T ss_dssp             HHHHHHHHHHH--------------------------------------HC-----------------------------
T ss_pred             HHHHHHHHHHh--------------------------------------cC-----------------------------
Confidence            99998665543                                      33                             


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                            |++||||||||+||+.++..+++.|+++.      +|+|+|++||+++.+. .||||++|++|+++..|++..
T Consensus       158 ------p~ililDEpts~LD~~~~~~i~~~l~~l~------~~~Tvi~itH~l~~~~-~~D~i~vl~~G~iv~~G~~~e  223 (242)
T d1mv5a_         158 ------PKILMLDEATASLDSESESMVQKALDSLM------KGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNE  223 (242)
T ss_dssp             ------CSEEEEECCSCSSCSSSCCHHHHHHHHHH------TTSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHH
T ss_pred             ------CCEEEecCCccccCHHHHHHHHHHHHHHc------CCCEEEEEECCHHHHH-hCCEEEEEECCEEEEECCHHH
Confidence                  48999999999999999999999999872      4899999999999886 599999999999999997643

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=3.2e-40  Score=332.41  Aligned_cols=209  Identities=21%  Similarity=0.338  Sum_probs=168.2

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++||++.|+  +...++|+|+||++.+      +|||||  |||||      .++|+|+++|++|+|+++|.++.. +
T Consensus        14 I~~~nvsf~Y~--~~~~~~L~~isl~i~~Ge~iaivG~sGs--GKSTL------l~ll~gl~~p~~G~I~i~g~~i~~~~   83 (253)
T d3b60a1          14 LEFRNVTFTYP--GREVPALRNINLKIPAGKTVALVGRSGS--GKSTI------ASLITRFYDIDEGHILMDGHDLREYT   83 (253)
T ss_dssp             EEEEEEEECSS--SSSCCSEEEEEEEECTTCEEEEEECTTS--SHHHH------HHHHTTTTCCSEEEEEETTEETTTBC
T ss_pred             EEEEEEEEEeC--CCCCceeeceEEEEcCCCEEEEECCCCC--hHHHH------HHHHhcccCCCccEEEECCcccchhh
Confidence            45999999975  3456799999999988      999999  56654      579999999999999999999975 4


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHH-----HHHHHHHc--CCCcccCCccccCChHHHhhh
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIGDL--GIPHKRTSLANTLSGGMQRKL  195 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LSgG~~qr~  195 (601)
                      ...+|+.+|||||+|.+| ..|+.+|+.|+. ....+.++..+.     +.+.++.+  |+....++.+.+|||||||||
T Consensus        84 ~~~~r~~i~~v~Q~~~l~-~~ti~~n~~~~~-~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRv  161 (253)
T d3b60a1          84 LASLRNQVALVSQNVHLF-NDTVANNIAYAR-TEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRI  161 (253)
T ss_dssp             HHHHHHTEEEECSSCCCC-SSBHHHHHHTTT-TSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHH
T ss_pred             hhhhhheEEEEeeccccC-CcchhhhhhhcC-cccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHH
Confidence            566788999999999887 569999998763 223344433321     12344444  455666778899999999999


Q ss_pred             hchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhcc
Q psy7365         196 DNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSF  275 (601)
Q Consensus       196 ~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  275 (601)
                      +|||||+.+                                                                       
T Consensus       162 aiARal~~~-----------------------------------------------------------------------  170 (253)
T d3b60a1         162 AIARALLRD-----------------------------------------------------------------------  170 (253)
T ss_dssp             HHHHHHHHC-----------------------------------------------------------------------
T ss_pred             HHHHHHhcC-----------------------------------------------------------------------
Confidence            876554332                                                                       


Q ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         276 VPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       276 ~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                        |++||||||||+||+.++..+++.|+++.      +++|+|++|||++.+ ..||+|++|++|+|+..|++..
T Consensus       171 --p~ililDEpts~LD~~~~~~i~~~l~~l~------~~~Tvi~itH~l~~~-~~~D~v~vl~~G~Iv~~G~~~e  236 (253)
T d3b60a1         171 --SPILILDEATSALDTESERAIQAALDELQ------KNRTSLVIAHRLSTI-EQADEIVVVEDGIIVERGTHSE  236 (253)
T ss_dssp             --CSEEEEETTTSSCCHHHHHHHHHHHHHHH------TTSEEEEECSCGGGT-TTCSEEEEEETTEEEEEECHHH
T ss_pred             --CCEEEeccccccCCHHHHHHHHHHHHHhc------cCCEEEEEECCHHHH-HhCCEEEEEECCEEEEECCHHH
Confidence              48999999999999999999999999983      489999999999877 5799999999999999997654

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.1e-40  Score=330.30  Aligned_cols=197  Identities=21%  Similarity=0.296  Sum_probs=173.9

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCcc------cccccccCCCCcccCCCCC
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSAP------QKSYIGYCPQFDALNDRLT  388 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~~------~~~~ig~v~Q~~~l~~~lT  388 (601)
                      +++++-..-++.+++++...   +|+++++       +++.|+.++.|.++....      .|++||||||++.+++.+|
T Consensus        22 ~~vsl~i~~Ge~~~iiG~sG---sGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~t   98 (240)
T d3dhwc1          22 NNVSLHVPAGQIYGVIGASG---AGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRT   98 (240)
T ss_dssp             EEEEEEECSSCEEEEEESTT---SSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSB
T ss_pred             eceeEEEcCCCEEEEECCCC---CCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCcc
Confidence            89999999999999998522   4555433       345566656665553221      2467999999999999999


Q ss_pred             HHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHH
Q psy7365         389 PREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRF  468 (601)
Q Consensus       389 v~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~  468 (601)
                      |+||+.+...+++.+.++.++++.++|+.+||.+..+++|.+|||||||||+|||||+++|++|||||||+||||.++.+
T Consensus        99 v~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~  178 (240)
T d3dhwc1          99 VFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS  178 (240)
T ss_dssp             HHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhH
Confidence            99999999998999888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHh
Q psy7365         469 LWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKY  521 (601)
Q Consensus       469 i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~  521 (601)
                      ++++|+++.++ |+|||++|||++++..+||||++|++|+|++.|+++++.++.
T Consensus       179 i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~~P  232 (240)
T d3dhwc1         179 ILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHP  232 (240)
T ss_dssp             HHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTCSS
T ss_pred             HHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence            99999999776 999999999999999999999999999999999999986543

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=3.2e-40  Score=332.41  Aligned_cols=204  Identities=25%  Similarity=0.326  Sum_probs=164.5

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-c
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-D  122 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-~  122 (601)
                      +.++||++.|+  +...++|+|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|.++.. +
T Consensus        17 I~~~nvsf~Y~--~~~~~vL~~isl~i~~Ge~vaivG~sGs--GKSTL------l~ll~gl~~p~~G~I~i~g~~i~~~~   86 (255)
T d2hyda1          17 IDIDHVSFQYN--DNEAPILKDINLSIEKGETVAFVGMSGG--GKSTL------INLIPRFYDVTSGQILIDGHNIKDFL   86 (255)
T ss_dssp             EEEEEEEECSC--SSSCCSEEEEEEEECTTCEEEEECSTTS--SHHHH------HTTTTTSSCCSEEEEEETTEEGGGSC
T ss_pred             EEEEEEEEEeC--CCCCcceeceEEEEcCCCEEEEECCCCC--cHHHH------HHHHHhcCCccccccccCCEEcccCC
Confidence            55999999974  3456799999999988      999999  56655      579999999999999999999864 4


Q ss_pred             hHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCC-----------cccCCccccCChHH
Q psy7365         123 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIP-----------HKRTSLANTLSGGM  191 (601)
Q Consensus       123 ~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgG~  191 (601)
                      ...+|+.+|||||+|.+| ..||+||+.|+...  ...+    ++.++++..++.           ........+|||||
T Consensus        87 ~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~g~~~--~~~~----~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq  159 (255)
T d2hyda1          87 TGSLRNQIGLVQQDNILF-SDTVKENILLGRPT--ATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQ  159 (255)
T ss_dssp             HHHHHHTEEEECSSCCCC-SSBHHHHHGGGCSS--CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHH
T ss_pred             HHHhhheeeeeeccccCC-CCCHHHHHhccCcC--CCHH----HHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHH
Confidence            567889999999999888 46999999886432  2222    334445554432           23445667899999


Q ss_pred             HhhhhchhhhcchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHH
Q psy7365         192 QRKLDNVKVWFNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLF  271 (601)
Q Consensus       192 ~qr~~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~  271 (601)
                      |||++|||||+.+                                                                   
T Consensus       160 ~QRi~iARal~~~-------------------------------------------------------------------  172 (255)
T d2hyda1         160 KQRLSIARIFLNN-------------------------------------------------------------------  172 (255)
T ss_dssp             HHHHHHHHHHHHC-------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcC-------------------------------------------------------------------
Confidence            9999876554333                                                                   


Q ss_pred             hhccCCCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCccc
Q psy7365         272 AMSFVPASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  350 (601)
Q Consensus       272 ~~~~~~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~l  350 (601)
                            |+++|||||||+||+.+...+++.|.++      .+++|+|++||+++.+ ..||||++|++|+++..|++..
T Consensus       173 ------p~ililDEpts~LD~~t~~~i~~~l~~l------~~~~TvI~itH~~~~~-~~~D~ii~l~~G~iv~~G~~~e  238 (255)
T d2hyda1         173 ------PPILILDEATSALDLESESIIQEALDVL------SKDRTTLIVAHRLSTI-THADKIVVIENGHIVETGTHRE  238 (255)
T ss_dssp             ------CSEEEEESTTTTCCHHHHHHHHHHHHHH------TTTSEEEEECSSGGGT-TTCSEEEEEETTEEEEEECHHH
T ss_pred             ------CCEEEEeCccccCCHHHHHHHHHHHHHH------hcCCEEEEEeCCHHHH-HhCCEEEEEECCEEEEECCHHH
Confidence                  4899999999999999999999999987      2488999999999976 5799999999999999987644

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=8.9e-40  Score=323.33  Aligned_cols=193  Identities=22%  Similarity=0.360  Sum_probs=169.8

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCc-ccccccccCCCCcccCCCCCHHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSA-PQKSYIGYCPQFDALNDRLTPREHL  393 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~-~~~~~ig~v~Q~~~l~~~lTv~E~L  393 (601)
                      +++++...-++.+++++...   +|+++++       +++.|+.++.|.++... +.+++|||+||++.+|+++||+||+
T Consensus        17 ~~vs~~i~~Ge~~~liGpsG---aGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl   93 (229)
T d3d31a2          17 DNLSLKVESGEYFVILGPTG---AGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNL   93 (229)
T ss_dssp             EEEEEEECTTCEEEEECCCT---HHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHH
T ss_pred             eeeEEEECCCCEEEEECCCC---CcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeeccccccCccccHHHHH
Confidence            89999999999999998522   5555543       34556666666666432 3467899999999999999999999


Q ss_pred             HHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHH
Q psy7365         394 EFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCI  473 (601)
Q Consensus       394 ~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL  473 (601)
                      .|....++.+.   .+++.++++.+++.++.++++.+|||||||||+|||||+++|++|||||||+||||.++.+++++|
T Consensus        94 ~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l  170 (229)
T d3d31a2          94 EFGMRMKKIKD---PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML  170 (229)
T ss_dssp             HHHHHHHCCCC---HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHH
T ss_pred             HHHHhhccccH---HHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHH
Confidence            99998888754   357889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHh-CCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         474 ERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       474 ~~l~~-~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      +++.+ .|.|||++|||++++..+||||++|++|++++.|+|+++.++
T Consensus       171 ~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~  218 (229)
T d3d31a2         171 SVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK  218 (229)
T ss_dssp             HHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred             HHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            99865 599999999999999999999999999999999999999764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=6.7e-39  Score=319.86  Aligned_cols=207  Identities=26%  Similarity=0.350  Sum_probs=181.3

Q ss_pred             ccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCc--ccccccccCCCCc
Q psy7365         311 SLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSA--PQKSYIGYCPQFD  381 (601)
Q Consensus       311 ~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~--~~~~~ig~v~Q~~  381 (601)
                      ++.+++++   +++++-..-++.+++++...   .|+++++       +++.|+..+.+.++...  ..++.+||+||++
T Consensus        11 ~yg~~~vl---~~vs~~v~~Gei~glvG~nG---aGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~   84 (238)
T d1vpla_          11 RIGKKEIL---KGISFEIEEGEIFGLIGPNG---AGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEA   84 (238)
T ss_dssp             EETTEEEE---EEEEEEECTTCEEEEECCTT---SSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTC
T ss_pred             EECCEEEE---ccceeEEcCCCEEEEECCCC---CCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEeeecc
Confidence            44456666   99999999999999997421   4555433       34455555556554332  2467899999999


Q ss_pred             ccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCC
Q psy7365         382 ALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGM  461 (601)
Q Consensus       382 ~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGL  461 (601)
                      .+|+.+|+.||+.|+..+++.+..+..+.++++++.++|.+..++++++||||||||++||+||+++|++|||||||+||
T Consensus        85 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gL  164 (238)
T d1vpla_          85 GAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGL  164 (238)
T ss_dssp             CCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTC
T ss_pred             ccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCC
Confidence            99999999999999999999888888888999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHhCC
Q psy7365         462 DPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYGQ  523 (601)
Q Consensus       462 D~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~~~  523 (601)
                      ||.++++++++|++++++|+|||++|||+++++.+||||++|++|++++.|+|+++++++..
T Consensus       165 D~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~~  226 (238)
T d1vpla_         165 DVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKA  226 (238)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhccCC
Confidence            99999999999999999999999999999999999999999999999999999999988754

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=1.4e-38  Score=316.38  Aligned_cols=192  Identities=27%  Similarity=0.358  Sum_probs=162.4

Q ss_pred             chhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCc-ccccccccCCCCcccCCCCCHHHHHH
Q psy7365         323 YMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSA-PQKSYIGYCPQFDALNDRLTPREHLE  394 (601)
Q Consensus       323 dl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~-~~~~~ig~v~Q~~~l~~~lTv~E~L~  394 (601)
                      |+++-.. .+.+++++...   +|+++++       +++.|+.++.|.++... +.+++||||||++.+|+++||+||+.
T Consensus        17 ~vs~~~~-~e~~~liGpnG---aGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~   92 (240)
T d2onka1          17 NVDFEMG-RDYCVLLGPTG---AGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA   92 (240)
T ss_dssp             EEEEEEC-SSEEEEECCTT---SSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred             EEEEEeC-CEEEEEECCCC---ChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhh
Confidence            3443332 36778887422   5555543       44556666666665432 34678999999999999999999999


Q ss_pred             HhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q psy7365         395 FYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIE  474 (601)
Q Consensus       395 ~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~  474 (601)
                      |..  ++.+..+.++++.++++.+||.+..+++|.+|||||||||+|||||+++|++|||||||+||||.++..+++.|+
T Consensus        93 ~~l--~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~  170 (240)
T d2onka1          93 YGL--RNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR  170 (240)
T ss_dssp             TTC--TTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHH
T ss_pred             hhh--cccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHH
Confidence            864  456667777889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         475 RAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       475 ~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      ++.++ |+|||++|||++++.++||||++|++|++++.|+++++.+.
T Consensus       171 ~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~  217 (240)
T d2onka1         171 FVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA  217 (240)
T ss_dssp             HHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcC
Confidence            99765 99999999999999999999999999999999999999753

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=9.9e-38  Score=314.77  Aligned_cols=205  Identities=20%  Similarity=0.248  Sum_probs=171.6

Q ss_pred             ccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCC----------------
Q psy7365         311 SLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKS----------------  367 (601)
Q Consensus       311 ~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~----------------  367 (601)
                      .+.+..++   +++++-..-++.+++++...   +|+++++       +++.|+.++.|.++..                
T Consensus        11 ~yg~~~al---~~vs~~i~~GEi~~iiG~sG---sGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~   84 (258)
T d1b0ua_          11 RYGGHEVL---KGVSLQARAGDVISIIGSSG---SGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQL   84 (258)
T ss_dssp             EETTEEEE---EEEEEEECTTCEEEEECCTT---SSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHH
T ss_pred             EECCEEEE---cceeeEEcCCCEEEEECCCC---CcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHH
Confidence            34455555   89999999999999997421   4444432       3344555444444321                


Q ss_pred             cccccccccCCCCcccCCCCCHHHHHHHhH-HhcCCChhHHHHHHHHHHHHcCCCc-ccccccCcCChHHHHHHHHHHHH
Q psy7365         368 APQKSYIGYCPQFDALNDRLTPREHLEFYS-RVRNLPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIAL  445 (601)
Q Consensus       368 ~~~~~~ig~v~Q~~~l~~~lTv~E~L~~~~-~~~g~~~~~~~~~~~~lLe~~~L~~-~~~~~~~~LSgGqkQRl~lA~AL  445 (601)
                      ...+++||||||++.+++.+||.||+.+.. ...+.+..+.++++.++++.++|.+ ..+++|.+|||||||||+|||||
T Consensus        85 ~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL  164 (258)
T d1b0ua_          85 RLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARAL  164 (258)
T ss_dssp             HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHH
T ss_pred             HHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHH
Confidence            113567999999999999999999998863 5567777888889999999999986 45788999999999999999999


Q ss_pred             hCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHh
Q psy7365         446 LGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKY  521 (601)
Q Consensus       446 ~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~  521 (601)
                      +.+|++|||||||+||||.++.+++++|++++++|+|||++|||++++..+||||++|++|+|++.|+|+++.+..
T Consensus       165 ~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~~~P  240 (258)
T d1b0ua_         165 AMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNP  240 (258)
T ss_dssp             HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             hcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence            9999999999999999999999999999999989999999999999999999999999999999999999997653

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.2e-38  Score=313.07  Aligned_cols=208  Identities=18%  Similarity=0.261  Sum_probs=169.4

Q ss_pred             hhhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCC-
Q psy7365          49 VSLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRT-  121 (601)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~-  121 (601)
                      +..++|++++        ++|+++||+|.+      +|||||  |||||      .++|+|+. |++|+|.++|+++.. 
T Consensus         3 il~~~dv~~~--------~~l~~isl~I~~Gei~~iiG~nGa--GKSTL------l~~l~Gl~-~~~G~I~~~g~~i~~~   65 (231)
T d1l7vc_           3 VMQLQDVAES--------TRLGPLSGEVRAGEILHLVGPNGA--GKSTL------LARMAGMT-SGKGSIQFAGQPLEAW   65 (231)
T ss_dssp             EEEEEEECCT--------TTSCSEEEEEETTCEEECBCCTTS--SHHHH------HHHHHTSC-CCSSEEEESSSBGGGS
T ss_pred             EEEEECcccC--------ceecCEEEEEcCCCEEEEECCCCC--cHHHH------HHHHhCCC-CCceEEEECCEECCcC
Confidence            3457888766        379999999988      999999  56654      57999976 589999999999854 


Q ss_pred             chHHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhh
Q psy7365         122 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVW  201 (601)
Q Consensus       122 ~~~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~  201 (601)
                      ....++...+|++|+....+..++++++.++...     ....+++.++++.+++.+..++++++||||||||+++||++
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al  140 (231)
T d1l7vc_          66 SATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD-----KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVV  140 (231)
T ss_dssp             CHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSC-----TTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHH
T ss_pred             CHHHHHhhceeeeccccCCccccHHHHhhhccch-----hhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHH
Confidence            3445666789999998777788999998775431     22345678899999999999999999999999999876554


Q ss_pred             cchhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEE
Q psy7365         202 FNNKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTV  281 (601)
Q Consensus       202 ~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~l  281 (601)
                      ++.+-                                 ..+|                                 .|+++
T Consensus       141 ~~~~p---------------------------------~~~p---------------------------------~p~ll  154 (231)
T d1l7vc_         141 LQITP---------------------------------QANP---------------------------------AGQLL  154 (231)
T ss_dssp             HHHCT---------------------------------TTCT---------------------------------TCCEE
T ss_pred             HhhCc---------------------------------ccCC---------------------------------CCCEE
Confidence            32100                                 0111                                 26899


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcc
Q psy7365         282 ILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  349 (601)
Q Consensus       282 iLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~  349 (601)
                      ||||||+||||.++..++++|+++.     .+|+|||++|||++++.++|||+++|.+|++++.|++.
T Consensus       155 llDEPt~gLD~~~~~~i~~~i~~l~-----~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~  217 (231)
T d1l7vc_         155 LLDEPMNSLDVAQQSALDKILSALC-----QQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRRE  217 (231)
T ss_dssp             EESSCSTTCCHHHHHHHHHHHHHHH-----HTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHH
T ss_pred             EEcCCCCCCCHHHHHHHHHHHHHHH-----hCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHH
Confidence            9999999999999999999999983     46999999999999999999999999999999998754

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=2.2e-37  Score=306.66  Aligned_cols=194  Identities=20%  Similarity=0.310  Sum_probs=163.0

Q ss_pred             EEEEecchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCcc-------cccccccCCCCcc
Q psy7365         317 VILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSAP-------QKSYIGYCPQFDA  382 (601)
Q Consensus       317 VI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~~-------~~~~ig~v~Q~~~  382 (601)
                      .+.+=+++++...-++.+++++...   +|+++++       +++.|..++.+.++....       .+++||||||++.
T Consensus        17 ~~~al~~isl~i~~Ge~~~iiG~sG---sGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~   93 (230)
T d1l2ta_          17 IIYALKNVNLNIKEGEFVSIMGPSG---SGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN   93 (230)
T ss_dssp             EEEEEEEEEEEECTTCEEEEECSTT---SSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCC
T ss_pred             eEEEEeceEEEEcCCCEEEEECCCC---CCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchh
Confidence            3334489999999999999998532   5555543       345566666666654322       1356999999999


Q ss_pred             cCCCCCHHHHHHHhHHhc---CCChhHHHHHHHHHHHHcCCCc-ccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCC
Q psy7365         383 LNDRLTPREHLEFYSRVR---NLPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPT  458 (601)
Q Consensus       383 l~~~lTv~E~L~~~~~~~---g~~~~~~~~~~~~lLe~~~L~~-~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPT  458 (601)
                      +++.+||+||+.+...+.   +.+..+..+++.++|+.++|.+ ..+++|.+|||||||||+|||||+++|++|||||||
T Consensus        94 l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPT  173 (230)
T d1l2ta_          94 LIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPT  173 (230)
T ss_dssp             CCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             hCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCc
Confidence            999999999999877654   3455666778999999999976 589999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCH
Q psy7365         459 SGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA  514 (601)
Q Consensus       459 sGLD~~~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~  514 (601)
                      +||||.++.+++++|+++.++ |+|||++|||++++ ++||||++|++|+|+.+|++
T Consensus       174 s~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~~g~~  229 (230)
T d1l2ta_         174 GALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKL  229 (230)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEEC
T ss_pred             cccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEECCEEEEeccC
Confidence            999999999999999999765 99999999999987 69999999999999999875

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=1.9e-37  Score=309.71  Aligned_cols=202  Identities=21%  Similarity=0.256  Sum_probs=168.3

Q ss_pred             ccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCccc----ccccccCCC
Q psy7365         311 SLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSAPQ----KSYIGYCPQ  379 (601)
Q Consensus       311 ~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~~~----~~~ig~v~Q  379 (601)
                      .+.+..++   |++++-..-++.+++++...   .|+++++       +++.|+.++.|.++...+.    +..++|+||
T Consensus        15 ~yg~~~al---~~vs~~i~~Gei~~liGpnG---aGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q   88 (240)
T d1ji0a_          15 YYGAIHAI---KGIDLKVPRGQIVTLIGANG---AGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPE   88 (240)
T ss_dssp             EETTEEEE---EEEEEEEETTCEEEEECSTT---SSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECS
T ss_pred             EECCEEEE---eeeeEEECCCCEEEEECCCC---CcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCc
Confidence            34455555   99999999999999997422   4555433       3455666666666544331    345889999


Q ss_pred             CcccCCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHc-CCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCC
Q psy7365         380 FDALNDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKF-ALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPT  458 (601)
Q Consensus       380 ~~~l~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~-~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPT  458 (601)
                      ++.+|+.+||+||+.+....+. .....++.++++++.+ ++.+..++++++|||||||||+|||||+++|++|||||||
T Consensus        89 ~~~l~~~ltv~en~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt  167 (240)
T d1ji0a_          89 GRRIFPELTVYENLMMGAYNRK-DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPS  167 (240)
T ss_dssp             SCCCCTTSBHHHHHHGGGTTCC-CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTT
T ss_pred             ccccCCcccHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCC
Confidence            9999999999999987665443 3344556677788877 6888999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHH
Q psy7365         459 SGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS  519 (601)
Q Consensus       459 sGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~  519 (601)
                      +||||.++++++++|++++++|+|||++|||++++.++||||++|++|+++++|+++++.+
T Consensus       168 ~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~  228 (240)
T d1ji0a_         168 LGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD  228 (240)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred             cCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence            9999999999999999999899999999999999999999999999999999999999864

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=5.4e-37  Score=309.06  Aligned_cols=204  Identities=21%  Similarity=0.233  Sum_probs=169.0

Q ss_pred             ccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCcc----cccccccCCC
Q psy7365         311 SLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSAP----QKSYIGYCPQ  379 (601)
Q Consensus       311 ~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~~----~~~~ig~v~Q  379 (601)
                      .+.+..++   +++++...-++.+++++...   .|+++++       +++.|+.++.+.++....    .+..|+|+||
T Consensus        13 ~yg~~~aL---~~vs~~v~~Gei~~liG~nG---aGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q   86 (254)
T d1g6ha_          13 YFGEFKAL---DGVSISVNKGDVTLIIGPNG---SGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQ   86 (254)
T ss_dssp             EETTEEEE---EEECCEEETTCEEEEECSTT---SSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCC
T ss_pred             EECCeEEE---cceEEEECCCCEEEEECCCC---CcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCC
Confidence            34455665   99999999999999998421   4554433       344566666666554322    2345999999


Q ss_pred             CcccCCCCCHHHHHHHhHHh-------------cCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHh
Q psy7365         380 FDALNDRLTPREHLEFYSRV-------------RNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL  446 (601)
Q Consensus       380 ~~~l~~~lTv~E~L~~~~~~-------------~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~  446 (601)
                      ++.+++.+||+||+.+....             +....++..+++.++++.+++.+..++++++|||||||||+|||||+
T Consensus        87 ~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~  166 (254)
T d1g6ha_          87 TPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALM  166 (254)
T ss_dssp             CCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH
T ss_pred             ccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHH
Confidence            99999999999999874321             11233445567889999999999999999999999999999999999


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         447 GNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       447 ~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      ++|++|||||||+||||.++++++++|++++++|+|||++|||++++.++||||++|++|+++++|+++++.+.
T Consensus       167 ~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~~~  240 (254)
T d1g6ha_         167 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN  240 (254)
T ss_dssp             TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHHHHH
T ss_pred             hCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecHHHHhhc
Confidence            99999999999999999999999999999998999999999999999999999999999999999999987553

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=7.3e-36  Score=290.59  Aligned_cols=189  Identities=19%  Similarity=0.230  Sum_probs=154.7

Q ss_pred             hhhcccccccccCCCccceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCch
Q psy7365          50 SLFESLSENRDKLGIDSYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDM  123 (601)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~  123 (601)
                      .+++||++.|++     ++++|+||++++      +|||||  |||||      .++|+|+++|++|+|.++|.++.   
T Consensus         3 lev~~ls~~y~~-----~vl~~is~~i~~Gei~~l~G~NGs--GKSTL------l~~i~gl~~p~~G~I~~~g~~i~---   66 (200)
T d1sgwa_           3 LEIRDLSVGYDK-----PVLERITMTIEKGNVVNFHGPNGI--GKTTL------LKTISTYLKPLKGEIIYNGVPIT---   66 (200)
T ss_dssp             EEEEEEEEESSS-----EEEEEEEEEEETTCCEEEECCTTS--SHHHH------HHHHTTSSCCSEEEEEETTEEGG---
T ss_pred             EEEEEEEEEeCC-----eEEeceEEEEcCCCEEEEECCCCC--hHHHH------HHHHhcccccCCCEEEECCEehh---
Confidence            358999999853     589999999998      999999  56665      67999999999999999999874   


Q ss_pred             HHhcccEEEEccCCCCCCCCCHHHHHHHhHhhcCCChHHHHHHHHHHHHHcCCCcccCCccccCChHHHhhhhchhhhcc
Q psy7365         124 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIGDLGIPHKRTSLANTLSGGMQRKLDNVKVWFN  203 (601)
Q Consensus       124 ~~~~~~ig~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr~~~~~~~~~  203 (601)
                       ..+.+++|+||++.++..+|+.|++.+....++....  +.++.++++.+++.+. ++++++||||||||+++||++  
T Consensus        67 -~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~--~~~~~~~l~~~~~~~~-~~~~~~LSgG~~qrv~ia~al--  140 (200)
T d1sgwa_          67 -KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTL--  140 (200)
T ss_dssp             -GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCC--HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHT--
T ss_pred             -HhcCcEEEEeecccCCCCcCHHHHHHHHHHhcCCccC--HHHHHHHHHHcCCccc-ccccCcCCCcHHHHHHHHHHH--
Confidence             3467899999999999999999999998888876433  2446678899988664 567999999999999854432  


Q ss_pred             hhhHHHHHHHhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEE
Q psy7365         204 NKAWIAAVSFMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVIL  283 (601)
Q Consensus       204 ~~~~~a~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liL  283 (601)
                                                          +++                                   |+++||
T Consensus       141 ------------------------------------~~~-----------------------------------~~llll  149 (200)
T d1sgwa_         141 ------------------------------------LVN-----------------------------------AEIYVL  149 (200)
T ss_dssp             ------------------------------------TSC-----------------------------------CSEEEE
T ss_pred             ------------------------------------hcC-----------------------------------CCEEEE
Confidence                                                233                                   589999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecC
Q psy7365         284 DEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAA  339 (601)
Q Consensus       284 DEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~  339 (601)
                      ||||+|||+.++..+++.|.++.    +..|.++|.++|++    .+||++.+|..
T Consensus       150 DEPt~gLD~~~~~~i~~~l~~~~----~~~~~~ii~~~~~l----~~~D~~~~l~~  197 (200)
T d1sgwa_         150 DDPVVAIDEDSKHKVLKSILEIL----KEKGIVIISSREEL----SYCDVNENLHK  197 (200)
T ss_dssp             ESTTTTSCTTTHHHHHHHHHHHH----HHHSEEEEEESSCC----TTSSEEEEGGG
T ss_pred             cCcccccCHHHHHHHHHHHHHHH----hCCCEEEEEEechh----hhcchhhheee
Confidence            99999999999999999999874    23466676666765    47999988853

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.8e-36  Score=305.52  Aligned_cols=183  Identities=20%  Similarity=0.283  Sum_probs=138.9

Q ss_pred             cceeecceEEeec------ccCCCCCCCccccchhhhHHHhccCCCCCCeeEEEEccccCCCchHHhcccEEEEccCCCC
Q psy7365          66 SYGISDTSLEEQP------LGPSGITLGLHTLGLEFVSRSMLMGMLPVSSGTAKIYDHDIRTDMTTIRRSLGVCPQYNAL  139 (601)
Q Consensus        66 ~~~~~~~~~~~~~------~g~~g~~~g~~~~g~~~~~~~~l~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ig~v~Q~~~~  139 (601)
                      .++|+|+||++.+      +|||||  |||||      .++|+|+++|++|+|.++|            +++|+||++.+
T Consensus        49 ~pvL~~isl~i~~Ge~vaivG~nGs--GKSTL------l~~i~Gl~~p~~G~I~~~g------------~i~~v~Q~~~l  108 (281)
T d1r0wa_          49 NPVLKNINLNIEKGEMLAITGSTGS--GKTSL------LMLILGELEASEGIIKHSG------------RVSFCSQFSWI  108 (281)
T ss_dssp             CEEEEEEEEEECTTCEEEEEESTTS--SHHHH------HHHHHTSSCCSEEEEECCS------------CEEEECSSCCC
T ss_pred             CeEEeCeEEEEcCCCEEEEECCCCC--hHHHH------HHHHhCCCcCCCcEEEECC------------EEEEEeccccc
Confidence            5699999999998      999999  56654      5799999999999999988            38999999998


Q ss_pred             CCCCCHHHHHHHhHhhcCCChHHHHHHHH---HHHHHcCCCc----ccCCccccCChHHHhhhhchhhhcchhhHHHHHH
Q psy7365         140 FDKLTVEEHMWFYSQLKQVPKDLAQLEIS---NMIGDLGIPH----KRTSLANTLSGGMQRKLDNVKVWFNNKAWIAAVS  212 (601)
Q Consensus       140 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~---~~l~~~gl~~----~~~~~~~~LSgG~~qr~~~~~~~~~~~~~~a~~~  212 (601)
                      |+. ||+||+.|+...   +....+..+.   .......+.+    ..++.+.+|||||||||++||||+          
T Consensus       109 ~~~-tv~eni~~~~~~---~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~----------  174 (281)
T d1r0wa_         109 MPG-TIKENIIFGVSY---DEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVY----------  174 (281)
T ss_dssp             CSE-EHHHHHTTTSCC---CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHH----------
T ss_pred             cCc-eeeccccccccc---cchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHH----------
Confidence            865 999999876432   2221111111   0111122222    234566789999999998655443          


Q ss_pred             HhhhhhhhhHhhcCCCCCCcchhhHHhhcCCcchhhHHHHHHHHhhhcchhHHHHHHHHhhccCCCcEEEEecCCCCCCH
Q psy7365         213 FMNAANNVILRASLPSNVSRDDYAIVAINHPMNLTHKQMALETLKKAGTSILVAVTVLFAMSFVPASTVILDEPTSGVDP  292 (601)
Q Consensus       213 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~liLDEPtsgLD~  292 (601)
                                                  ++                                   |++|||||||++||+
T Consensus       175 ----------------------------~~-----------------------------------p~illLDEPts~LD~  191 (281)
T d1r0wa_         175 ----------------------------KD-----------------------------------ADLYLLDSPFGYLDV  191 (281)
T ss_dssp             ----------------------------SC-----------------------------------CSEEEEESCCCSSCH
T ss_pred             ----------------------------hC-----------------------------------ccchhhcCccccCCH
Confidence                                        33                                   489999999999999


Q ss_pred             HHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc
Q psy7365         293 YSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  351 (601)
Q Consensus       293 ~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL  351 (601)
                      .++..+++.+.+.     ...|+|+|++||+++.+ ..||||++|.+|+++..|++..+
T Consensus       192 ~~~~~i~~~~~~~-----~~~~~tvi~itH~~~~l-~~aDrI~vl~~G~i~~~Gt~~eL  244 (281)
T d1r0wa_         192 FTEEQVFESCVCK-----LMANKTRILVTSKMEHL-RKADKILILHQGSSYFYGTFSEL  244 (281)
T ss_dssp             HHHHHHHHHCCCC-----CTTTSEEEEECSCHHHH-HTCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHHHHHHHH-----hhCCCEEEEEechHHHH-HhCCEEEEEECCEEEEECCHHHH
Confidence            9999998764332     23589999999999765 68999999999999999976543

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.4e-32  Score=273.22  Aligned_cols=194  Identities=14%  Similarity=0.146  Sum_probs=150.6

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCc---ccccccccCCCCcccCCCCCHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSA---PQKSYIGYCPQFDALNDRLTPRE  391 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~---~~~~~ig~v~Q~~~l~~~lTv~E  391 (601)
                      +++++-...++.+++++.-.   +|+++++       ++..|+.++.+.++...   ..+++++||||++.+|+ .|++|
T Consensus        31 ~~isl~i~~Ge~vaivG~sG---sGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~e  106 (251)
T d1jj7a_          31 QGLTFTLRPGEVTALVGPNG---SGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQE  106 (251)
T ss_dssp             EEEEEEECTTCEEEEECSTT---SSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHH
T ss_pred             eceEEEEcCCCEEEEECCCC---CcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHhhhccccccccC-cchhh
Confidence            89999999999999997522   5555543       34455666666555432   34678999999998875 69999


Q ss_pred             HHHHhHHhcCCChhHHH-----HHHHHHHHHc--CCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHH
Q psy7365         392 HLEFYSRVRNLPSVLLN-----TIVNESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG  464 (601)
Q Consensus       392 ~L~~~~~~~g~~~~~~~-----~~~~~lLe~~--~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~  464 (601)
                      |+.+..... .......     ....+.++.+  ++....++.+.+|||||||||+|||||+++|++|||||||++||+.
T Consensus       107 ni~~g~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~  185 (251)
T d1jj7a_         107 NIAYGLTQK-PTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN  185 (251)
T ss_dssp             HHHCSCSSC-CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHH
T ss_pred             hhhhhhccc-chHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChh
Confidence            998753211 1111111     1122344444  4455567778899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHh
Q psy7365         465 ARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKY  521 (601)
Q Consensus       465 ~~~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~  521 (601)
                      ++.++++.|+++.++ |+|||++|||++.+. .||||++|++|+|++.|++++|.++-
T Consensus       186 ~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~-~aDrI~vl~~G~iv~~Gt~~eLl~~~  242 (251)
T d1jj7a_         186 SQLQVEQLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAIREGGTHQQLMEKK  242 (251)
T ss_dssp             HHHHHHHHHHTCGGGGGCEEEEECSCHHHHH-TCSEEEEEETTEEEEEECHHHHHHHT
T ss_pred             hHHHHHHHHHHHhhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhCC
Confidence            999999999998654 899999999999875 59999999999999999999998763

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=4.3e-32  Score=270.71  Aligned_cols=193  Identities=18%  Similarity=0.249  Sum_probs=148.9

Q ss_pred             CcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCc---ccccccccCCCCccc
Q psy7365         314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSA---PQKSYIGYCPQFDAL  383 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~---~~~~~ig~v~Q~~~l  383 (601)
                      +..++   |++++....++.+++++.-.   +|+++++       .+..|+.++.|.++...   ..++++|||||++.+
T Consensus        15 ~~~vL---~~isl~i~~Ge~vaIvG~sG---sGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~l   88 (241)
T d2pmka1          15 SPVIL---DNINLSIKQGEVIGIVGRSG---SGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVL   88 (241)
T ss_dssp             SCEEE---EEEEEEEETTCEEEEECSTT---SSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCC
T ss_pred             CcceE---eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEEEeccccc
Confidence            44565   99999999999999998522   5555543       34445555666655432   346789999999987


Q ss_pred             CCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCC-----------CcccccccCcCChHHHHHHHHHHHHhCCCCEE
Q psy7365         384 NDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFAL-----------GHYSDREVRTLSGGNKRKLSTAIALLGNTPLI  452 (601)
Q Consensus       384 ~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L-----------~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lL  452 (601)
                      |+ .|++||+.+...  ....++    +.+.++..++           .......+..|||||||||+|||||+.+|++|
T Consensus        89 f~-~Ti~eNi~~~~~--~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~il  161 (241)
T d2pmka1          89 LN-RSIIDNISLANP--GMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKIL  161 (241)
T ss_dssp             TT-SBHHHHHCTTST--TCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEE
T ss_pred             CC-ccccccccccCc--cccHHH----HHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchh
Confidence            75 699999987532  122222    2222222222           22344567899999999999999999999999


Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHh
Q psy7365         453 FLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKY  521 (601)
Q Consensus       453 lLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~  521 (601)
                      |||||||+||+.+++.+++.|+++. +|+|+|++||+++.+ ..||||++|++|+|++.|++++|.++.
T Consensus       162 ilDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~-~~~D~i~vl~~G~Iv~~G~~~ell~~~  228 (241)
T d2pmka1         162 IFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTV-KNADRIIVMEKGKIVEQGKHKELLSEP  228 (241)
T ss_dssp             EECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGG-TTSSEEEEEETTEEEEEECHHHHHHST
T ss_pred             hhhCCccccCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHH-HhCCEEEEEECCEEEEECCHHHHHhCC
Confidence            9999999999999999999999985 489999999999987 469999999999999999999997653

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.97  E-value=2.2e-32  Score=273.19  Aligned_cols=193  Identities=19%  Similarity=0.254  Sum_probs=148.3

Q ss_pred             CcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCC---cccccccccCCCCccc
Q psy7365         314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKS---APQKSYIGYCPQFDAL  383 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~---~~~~~~ig~v~Q~~~l  383 (601)
                      ++.++   +++++...-++.+++++.-.   +|+++++       ++..|+.++.+.++..   ...+++||||||++.+
T Consensus        14 ~~~vL---~~isl~i~~Ge~vaivG~sG---sGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l   87 (242)
T d1mv5a_          14 SEQIL---RDISFEAQPNSIIAFAGPSG---GGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAI   87 (242)
T ss_dssp             SSCSE---EEEEEEECTTEEEEEECCTT---SSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCC
T ss_pred             CCcee---eeeEEEEcCCCEEEEECCCC---CCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEcccccc
Confidence            34555   89999999999999997522   4555433       3455666666655543   3457889999999988


Q ss_pred             CCCCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCc-------ccc----cccCcCChHHHHHHHHHHHHhCCCCEE
Q psy7365         384 NDRLTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGH-------YSD----REVRTLSGGNKRKLSTAIALLGNTPLI  452 (601)
Q Consensus       384 ~~~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~-------~~~----~~~~~LSgGqkQRl~lA~AL~~~P~lL  452 (601)
                      |+. |++||+.+.... ....    +.+.+.++..++.+       ..+    ....+|||||||||+|||||+.+|++|
T Consensus        88 f~~-ti~eNi~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~il  161 (242)
T d1mv5a_          88 MAG-TIRENLTYGLEG-DYTD----EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKIL  161 (242)
T ss_dssp             CCE-EHHHHTTSCTTS-CSCH----HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred             CCc-chhhheeccccc-ccch----hhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            876 999999764221 1111    22333444433322       222    234579999999999999999999999


Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         453 FLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       453 lLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      |||||||+||+.+++.+++.|+++. +|+|||++||+++.+. .||||++|++|+|++.|++++|.+.
T Consensus       162 ilDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~-~~D~i~vl~~G~iv~~G~~~eLl~~  227 (242)
T d1mv5a_         162 MLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVAT  227 (242)
T ss_dssp             EEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHHHHH
T ss_pred             EecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence            9999999999999999999999986 5899999999999886 5999999999999999999999864

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=7.9e-32  Score=267.52  Aligned_cols=189  Identities=15%  Similarity=0.218  Sum_probs=152.3

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc------cccccccccccccCCcc---cccccccCCCCcccCCCCCHHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK------NSFARGYYLSLDMKSAP---QKSYIGYCPQFDALNDRLTPREH  392 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk------~~~g~g~~igld~~~~~---~~~~ig~v~Q~~~l~~~lTv~E~  392 (601)
                      |++++-.+-++.+++++...   .|++++++      +..+...+.|.++....   .+...+|++|+.......+++++
T Consensus        16 ~~isl~I~~Gei~~iiG~nG---aGKSTLl~~l~Gl~~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   92 (231)
T d1l7vc_          16 GPLSGEVRAGEILHLVGPNG---AGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHY   92 (231)
T ss_dssp             CSEEEEEETTCEEECBCCTT---SSHHHHHHHHHTSCCCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHH
T ss_pred             cCEEEEEcCCCEEEEECCCC---CcHHHHHHHHhCCCCCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHH
Confidence            66777778888888887421   44444332      22344444444443322   23457899998776677899998


Q ss_pred             HHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhC-------CCCEEEEECCCCCCCHHH
Q psy7365         393 LEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG-------NTPLIFLDEPTSGMDPGA  465 (601)
Q Consensus       393 L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~-------~P~lLlLDEPTsGLD~~~  465 (601)
                      +.++..     .....+.++++++.+++.+..++++.+|||||||||+||+||++       +|++|||||||+||||.+
T Consensus        93 ~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~  167 (231)
T d1l7vc_          93 LTLHQH-----DKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQ  167 (231)
T ss_dssp             HHHHCS-----CTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHH
T ss_pred             hhhccc-----hhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHH
Confidence            876432     12234568889999999999999999999999999999999997       779999999999999999


Q ss_pred             HHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHH
Q psy7365         466 RRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK  518 (601)
Q Consensus       466 ~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~  518 (601)
                      +..++++|++++++|+|||++|||++++..+|||+++|++|++++.|+++++.
T Consensus       168 ~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~  220 (231)
T d1l7vc_         168 QSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL  220 (231)
T ss_dssp             HHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHS
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHh
Confidence            99999999999999999999999999999999999999999999999999884

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.97  E-value=6.2e-31  Score=264.24  Aligned_cols=194  Identities=18%  Similarity=0.286  Sum_probs=148.3

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCc---ccccccccCCCCcccCCCCCHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSA---PQKSYIGYCPQFDALNDRLTPRE  391 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~---~~~~~ig~v~Q~~~l~~~lTv~E  391 (601)
                      +++++...-++.+++++.-.   +|+++++       ++..|+.++.+.+....   ..+++++|+||++.+|. .|+++
T Consensus        32 ~~isl~i~~Ge~iaivG~sG---sGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~  107 (253)
T d3b60a1          32 RNINLKIPAGKTVALVGRSG---SGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-DTVAN  107 (253)
T ss_dssp             EEEEEEECTTCEEEEEECTT---SSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-SBHHH
T ss_pred             eceEEEEcCCCEEEEECCCC---ChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEEEEeeccccCC-cchhh
Confidence            88999999999999997522   5555543       34445565666555432   34678999999998775 58999


Q ss_pred             HHHHhHHhcCCChhHHHHH-----HHHHHHHc--CCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHH
Q psy7365         392 HLEFYSRVRNLPSVLLNTI-----VNESLNKF--ALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPG  464 (601)
Q Consensus       392 ~L~~~~~~~g~~~~~~~~~-----~~~lLe~~--~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~  464 (601)
                      |+.+.. ......++..+.     +.+.++.+  |+.....+.+.+|||||||||+|||||+.+|++||||||||+||+.
T Consensus       108 n~~~~~-~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~  186 (253)
T d3b60a1         108 NIAYAR-TEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE  186 (253)
T ss_dssp             HHHTTT-TSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHH
T ss_pred             hhhhcC-cccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHH
Confidence            997642 122222222111     12233333  3444556677899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHhC
Q psy7365         465 ARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKYG  522 (601)
Q Consensus       465 ~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~~  522 (601)
                      +++.+++.|+++. +++|||++||+++.+. .||||++|++|+|++.|++++|.++.+
T Consensus       187 ~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~-~~D~v~vl~~G~Iv~~G~~~eLl~~~~  242 (253)
T d3b60a1         187 SERAIQAALDELQ-KNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQHG  242 (253)
T ss_dssp             HHHHHHHHHHHHH-TTSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHHTS
T ss_pred             HHHHHHHHHHHhc-cCCEEEEEECCHHHHH-hCCEEEEEECCEEEEECCHHHHHhCCc
Confidence            9999999999986 4899999999999885 699999999999999999999987643

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.97  E-value=6.8e-31  Score=263.95  Aligned_cols=188  Identities=20%  Similarity=0.275  Sum_probs=146.3

Q ss_pred             cchhHHHhcCCEEEEecCCccccccCccccc-------cccccccccccccCC---cccccccccCCCCcccCCCCCHHH
Q psy7365         322 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLK-------NSFARGYYLSLDMKS---APQKSYIGYCPQFDALNDRLTPRE  391 (601)
Q Consensus       322 Hdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk-------~~~g~g~~igld~~~---~~~~~~ig~v~Q~~~l~~~lTv~E  391 (601)
                      +++++-..-++++++++.-.   +|++++++       +..|...+.+.++..   ...|++++||||++.+|+ .|++|
T Consensus        35 ~~isl~i~~Ge~vaivG~sG---sGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~e  110 (255)
T d2hyda1          35 KDINLSIEKGETVAFVGMSG---GGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS-DTVKE  110 (255)
T ss_dssp             EEEEEEECTTCEEEEECSTT---SSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCS-SBHHH
T ss_pred             eceEEEEcCCCEEEEECCCC---CcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheeeeeeccccCCC-CCHHH
Confidence            88999999999999997522   45554433       334455555554432   235788999999998775 69999


Q ss_pred             HHHHhHHhcCCChhHHHHHHHHHHHHcCCCc-----------ccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCC
Q psy7365         392 HLEFYSRVRNLPSVLLNTIVNESLNKFALGH-----------YSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSG  460 (601)
Q Consensus       392 ~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~-----------~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsG  460 (601)
                      |+.|+..  ...    .+++.++++..++.+           .......+||||||||++|||||+.+|++||||||||+
T Consensus       111 Ni~~g~~--~~~----~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~  184 (255)
T d2hyda1         111 NILLGRP--TAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSA  184 (255)
T ss_dssp             HHGGGCS--SCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred             HHhccCc--CCC----HHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence            9986421  111    233455566555532           22334567999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHHh
Q psy7365         461 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKY  521 (601)
Q Consensus       461 LD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~~  521 (601)
                      ||+.++..+++.|+++. +++|+|++||+++.+. .||||++|++|+|++.|++++|.++.
T Consensus       185 LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~~~~-~~D~ii~l~~G~iv~~G~~~eLl~~~  243 (255)
T d2hyda1         185 LDLESESIIQEALDVLS-KDRTTLIVAHRLSTIT-HADKIVVIENGHIVETGTHRELIAKQ  243 (255)
T ss_dssp             CCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGTT-TCSEEEEEETTEEEEEECHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhCC
Confidence            99999999999999875 4799999999999875 69999999999999999999998753

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=8.7e-30  Score=259.55  Aligned_cols=183  Identities=20%  Similarity=0.243  Sum_probs=138.1

Q ss_pred             CCcEEEEEecchhHHHhcCCEEEEecCCccccccCcccccc-------ccccccccccccCCcccccccccCCCCcccCC
Q psy7365         313 SGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN-------SFARGYYLSLDMKSAPQKSYIGYCPQFDALND  385 (601)
Q Consensus       313 ~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lLk~-------~~g~g~~igld~~~~~~~~~ig~v~Q~~~l~~  385 (601)
                      .|..|+   +++++-..-++.+++++...   +|++++++-       +.|...          ...+++|+||++.+++
T Consensus        47 ~g~pvL---~~isl~i~~Ge~vaivG~nG---sGKSTLl~~i~Gl~~p~~G~I~----------~~g~i~~v~Q~~~l~~  110 (281)
T d1r0wa_          47 VGNPVL---KNINLNIEKGEMLAITGSTG---SGKTSLLMLILGELEASEGIIK----------HSGRVSFCSQFSWIMP  110 (281)
T ss_dssp             TTCEEE---EEEEEEECTTCEEEEEESTT---SSHHHHHHHHHTSSCCSEEEEE----------CCSCEEEECSSCCCCS
T ss_pred             CCCeEE---eCeEEEEcCCCEEEEECCCC---ChHHHHHHHHhCCCcCCCcEEE----------ECCEEEEEeccccccC
Confidence            577887   99999999999999998522   566655442       112111          1236999999998876


Q ss_pred             CCCHHHHHHHhHHhcCCChhHHHHHHHHHHHHc-------CCCc----ccccccCcCChHHHHHHHHHHHHhCCCCEEEE
Q psy7365         386 RLTPREHLEFYSRVRNLPSVLLNTIVNESLNKF-------ALGH----YSDREVRTLSGGNKRKLSTAIALLGNTPLIFL  454 (601)
Q Consensus       386 ~lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~-------~L~~----~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlL  454 (601)
                       .|++||+.|...   ....    ....+++..       .+.+    ...+...+|||||||||+|||||+++|++|||
T Consensus       111 -~tv~eni~~~~~---~~~~----~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illL  182 (281)
T d1r0wa_         111 -GTIKENIIFGVS---YDEY----RYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLL  182 (281)
T ss_dssp             -EEHHHHHTTTSC---CCHH----HHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred             -ceeecccccccc---ccch----HHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhh
Confidence             499999976432   1111    122222222       2222    23345667999999999999999999999999


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEEEEeCCEEEEecCHHHHHHH
Q psy7365         455 DEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK  520 (601)
Q Consensus       455 DEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~iL~~G~iv~~G~~~~L~~~  520 (601)
                      ||||+|||+.+++.+++.+.....+|+|+|++||+++.+ +.||||++|++|++++.|++++|.+.
T Consensus       183 DEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l-~~aDrI~vl~~G~i~~~Gt~~eL~~~  247 (281)
T d1r0wa_         183 DSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHL-RKADKILILHQGSSYFYGTFSELQSL  247 (281)
T ss_dssp             ESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHH-HTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred             cCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHH-HhCCEEEEEECCEEEEECCHHHHhcc
Confidence            999999999999999986544345689999999999876 57999999999999999999999763

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.93  E-value=2.3e-26  Score=223.07  Aligned_cols=177  Identities=16%  Similarity=0.246  Sum_probs=141.8

Q ss_pred             CcEEEEEecchhHHHhcCCEEEEecCCccccccCcccc-------ccccccccccccccCCcccccccccCCCCcccCCC
Q psy7365         314 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL-------KNSFARGYYLSLDMKSAPQKSYIGYCPQFDALNDR  386 (601)
Q Consensus       314 G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~G~~~lL-------k~~~g~g~~igld~~~~~~~~~ig~v~Q~~~l~~~  386 (601)
                      ++.|+   +++++...-++.+++++...   +|+++++       ++..|+..+.+.++.  ..+.+++|+||+..+++.
T Consensus        13 ~~~vl---~~is~~i~~Gei~~l~G~NG---sGKSTLl~~i~gl~~p~~G~I~~~g~~i~--~~~~~i~~~~~~~~~~~~   84 (200)
T d1sgwa_          13 DKPVL---ERITMTIEKGNVVNFHGPNG---IGKTTLLKTISTYLKPLKGEIIYNGVPIT--KVKGKIFFLPEEIIVPRK   84 (200)
T ss_dssp             SSEEE---EEEEEEEETTCCEEEECCTT---SSHHHHHHHHTTSSCCSEEEEEETTEEGG--GGGGGEEEECSSCCCCTT
T ss_pred             CCeEE---eceEEEEcCCCEEEEECCCC---ChHHHHHHHHhcccccCCCEEEECCEehh--HhcCcEEEEeecccCCCC
Confidence            45665   89999999999999998422   5665543       344555555555443  346779999999999999


Q ss_pred             CCHHHHHHHhHHhcCCChhHHHHHHHHHHHHcCCCcccccccCcCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHH
Q psy7365         387 LTPREHLEFYSRVRNLPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGAR  466 (601)
Q Consensus       387 lTv~E~L~~~~~~~g~~~~~~~~~~~~lLe~~~L~~~~~~~~~~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~  466 (601)
                      +|+.+++.+...+++....  ++++.+.++.+++.+. ++++++||||||||++||+||+++|+++||||||+|||+.++
T Consensus        85 ~t~~~~l~~~~~~~~~~~~--~~~~~~~l~~~~~~~~-~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~  161 (200)
T d1sgwa_          85 ISVEDYLKAVASLYGVKVN--KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK  161 (200)
T ss_dssp             SBHHHHHHHHHHHTTCCCC--HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTH
T ss_pred             cCHHHHHHHHHHhcCCccC--HHHHHHHHHHcCCccc-ccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHH
Confidence            9999999998888876433  3456778888888653 567899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhC-CcEEEEEccChhHHHhhCCEEEEEeC
Q psy7365         467 RFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVN  505 (601)
Q Consensus       467 ~~i~~lL~~l~~~-G~tVllsTHdl~e~~~l~drv~iL~~  505 (601)
                      ..+++.|.++.++ |.+||.++|+++    +||++.+|++
T Consensus       162 ~~i~~~l~~~~~~~~~~ii~~~~~l~----~~D~~~~l~~  197 (200)
T d1sgwa_         162 HKVLKSILEILKEKGIVIISSREELS----YCDVNENLHK  197 (200)
T ss_dssp             HHHHHHHHHHHHHHSEEEEEESSCCT----TSSEEEEGGG
T ss_pred             HHHHHHHHHHHhCCCEEEEEEechhh----hcchhhheee
Confidence            9999999998654 667777777763    7999998864

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.06  E-value=7.6e-13  Score=122.20  Aligned_cols=61  Identities=16%  Similarity=0.126  Sum_probs=41.2

Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEecCCccccc
Q psy7365         278 ASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  345 (601)
Q Consensus       278 ~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL~~GkIv~~  345 (601)
                      |+++++|||....  .....+++.+.++.    +..+.++|+++|+.+ ...+|+++..+.+|++...
T Consensus       100 ~~vlllDE~~~~~--~~~~~~~~~l~~~l----~~~~~~il~~~h~~~-~~~~~~~i~~~~~~~i~~v  160 (178)
T d1ye8a1         100 RKVIIIDEIGKME--LFSKKFRDLVRQIM----HDPNVNVVATIPIRD-VHPLVKEIRRLPGAVLIEL  160 (178)
T ss_dssp             TCEEEECCCSTTG--GGCHHHHHHHHHHH----TCTTSEEEEECCSSC-CSHHHHHHHTCTTCEEEEC
T ss_pred             CCceeecCCCccc--hhhHHHHHHHHHHh----ccCCCEEEEEEccHH-HHHhhceEEEEeCCEEEEE
Confidence            6899999985433  22334445555442    235889999999864 4567888888888877543

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.75  E-value=1e-08  Score=106.07  Aligned_cols=78  Identities=22%  Similarity=0.235  Sum_probs=64.6

Q ss_pred             ccccCcCChHHHHHHHHHHHH----hCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEE
Q psy7365         425 DREVRTLSGGNKRKLSTAIAL----LGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKL  500 (601)
Q Consensus       425 ~~~~~~LSgGqkQRl~lA~AL----~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv  500 (601)
                      .++...||||||.++++|..+    ..++++++||||+++||+..+..+.++|+++...+.-+|++||+...++ .||++
T Consensus       327 ~~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~-~ad~~  405 (427)
T d1w1wa_         327 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFE-KSDAL  405 (427)
T ss_dssp             CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHT-TCSEE
T ss_pred             hhhhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHH-hcccE
Confidence            346678999999998776543    5678899999999999999999999999988655666999999988655 57987


Q ss_pred             EEE
Q psy7365         501 TIM  503 (601)
Q Consensus       501 ~iL  503 (601)
                      +.+
T Consensus       406 ~~V  408 (427)
T d1w1wa_         406 VGV  408 (427)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            755

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.53  E-value=1.3e-07  Score=97.42  Aligned_cols=55  Identities=15%  Similarity=0.147  Sum_probs=45.0

Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEe
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII  337 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL  337 (601)
                      ++++++||||+++||+..+..+.++|.++     ...+..+|++||+...+. .+|+.+.+
T Consensus       354 ~~pililDE~d~~Ld~~~~~~~~~~l~~~-----~~~~~Q~I~iTH~~~~~~-~ad~~~~V  408 (427)
T d1w1wa_         354 PSPFFVLDEVDAALDITNVQRIAAYIRRH-----RNPDLQFIVISLKNTMFE-KSDALVGV  408 (427)
T ss_dssp             CCSEEEESSTTTTCCHHHHHHHHHHHHHH-----CBTTBEEEEECSCHHHHT-TCSEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHH-----hCCCCEEEEEeCCHHHHH-hcccEEEE
Confidence            34699999999999999999999999886     234567999999976554 68997655

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.24  E-value=7.1e-08  Score=87.93  Aligned_cols=80  Identities=10%  Similarity=-0.027  Sum_probs=64.3

Q ss_pred             cCChHHHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEccChhHHHhhCCEEEEEeCCEE
Q psy7365         430 TLSGGNKRKLSTAIALLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVS-EGRCVILTSHNMEECEALCTKLTIMVNGQF  508 (601)
Q Consensus       430 ~LSgGqkQRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~-~G~tVllsTHdl~e~~~l~drv~iL~~G~i  508 (601)
                      .+|+|+++|.++++++..+|+++++|||...  ......+++.+.++.+ .+.++|+++|+.+ ...+|+++..+.+|++
T Consensus        81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~--~~~~~~~~~~l~~~l~~~~~~il~~~h~~~-~~~~~~~i~~~~~~~i  157 (178)
T d1ye8a1          81 EELAIPILERAYREAKKDRRKVIIIDEIGKM--ELFSKKFRDLVRQIMHDPNVNVVATIPIRD-VHPLVKEIRRLPGAVL  157 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCEEEECCCSTT--GGGCHHHHHHHHHHHTCTTSEEEEECCSSC-CSHHHHHHHTCTTCEE
T ss_pred             hhhhhhhHHHHHHHHHhcCCCceeecCCCcc--chhhHHHHHHHHHHhccCCCEEEEEEccHH-HHHhhceEEEEeCCEE
Confidence            4889999999999999999999999998443  3345566677766554 4899999999875 4668899988999988


Q ss_pred             EEec
Q psy7365         509 TCLG  512 (601)
Q Consensus       509 v~~G  512 (601)
                      +..+
T Consensus       158 ~~v~  161 (178)
T d1ye8a1         158 IELT  161 (178)
T ss_dssp             EECC
T ss_pred             EEEC
Confidence            7654

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.05  E-value=7.3e-06  Score=80.92  Aligned_cols=76  Identities=22%  Similarity=0.242  Sum_probs=64.1

Q ss_pred             cccCcCChHHHHHHHHHHH----HhCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEccChhHHHhhCCEEE
Q psy7365         426 REVRTLSGGNKRKLSTAIA----LLGNTPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLT  501 (601)
Q Consensus       426 ~~~~~LSgGqkQRl~lA~A----L~~~P~lLlLDEPTsGLD~~~~~~i~~lL~~l~~~G~tVllsTHdl~e~~~l~drv~  501 (601)
                      .....+|+|+|+...++..    ....|.++++|||-++|+|...+.+.+.|++..+ +.=||++||..+.++ .+|++.
T Consensus       215 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~~~~-~~d~~~  292 (308)
T d1e69a_         215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKIVME-AADLLH  292 (308)
T ss_dssp             CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTTGGG-GCSEEE
T ss_pred             chhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHH-hcccEE
Confidence            4577899999998877665    3557899999999999999999999999998754 577999999988875 579886


Q ss_pred             EE
Q psy7365         502 IM  503 (601)
Q Consensus       502 iL  503 (601)
                      .+
T Consensus       293 ~v  294 (308)
T d1e69a_         293 GV  294 (308)
T ss_dssp             EE
T ss_pred             EE
Confidence            63

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.69  E-value=9.2e-05  Score=72.67  Aligned_cols=57  Identities=25%  Similarity=0.258  Sum_probs=47.0

Q ss_pred             CCcEEEEecCCCCCCHHHHHHHHHHHHHHhhhccccCCcEEEEEecchhHHHhcCCEEEEe--cCC
Q psy7365         277 PASTVILDEPTSGVDPYSRRSIWELLIKVYYASHSLSGRTVILTTHYMDEADLLGDRIAII--AAG  340 (601)
Q Consensus       277 ~~~~liLDEPtsgLD~~~~~~l~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~~l~Drv~vL--~~G  340 (601)
                      ++.++++|||-++|+|.+.+.+.+.|++.      .....+|++||....+ +.+|+++.+  .+|
T Consensus       241 ~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~------~~~~QviitTHsp~~~-~~~d~~~~v~~~~g  299 (308)
T d1e69a_         241 PSPFYVLDEVDSPLDDYNAERFKRLLKEN------SKHTQFIVITHNKIVM-EAADLLHGVTMVNG  299 (308)
T ss_dssp             CCSEEEEESCCSSCCHHHHHHHHHHHHHH------TTTSEEEEECCCTTGG-GGCSEEEEEEESSS
T ss_pred             cCchhhhhhccccCCHHHHHHHHHHHHHh------ccCCEEEEEECCHHHH-HhcccEEEEEEeCC
Confidence            36799999999999999999999999986      2467899999998666 477988664  444

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=94.51  E-value=0.054  Score=50.86  Aligned_cols=59  Identities=14%  Similarity=0.151  Sum_probs=44.4

Q ss_pred             HHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHhCCcEEEEEccChhHHHh
Q psy7365         437 RKLSTAIALLGNTPLIFLDEPTSGMDPGARRFL-WTCIERAVSEGRCVILTSHNMEECEA  495 (601)
Q Consensus       437 QRl~lA~AL~~~P~lLlLDEPTsGLD~~~~~~i-~~lL~~l~~~G~tVllsTHdl~e~~~  495 (601)
                      +++.-..--+.+..++|+||+..|=|+.....+ +.+++.+.+.+..++++||..+....
T Consensus       103 ~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~l  162 (224)
T d1ewqa2         103 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTAL  162 (224)
T ss_dssp             HHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTC
T ss_pred             HHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhhh
Confidence            334444444567789999999999999877665 55667777778899999999776543

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.25  E-value=0.028  Score=53.27  Aligned_cols=45  Identities=24%  Similarity=0.435  Sum_probs=33.2

Q ss_pred             cEEEEecCCCCCCHHHHHHH-HHHHHHHhhhccccCCcEEEEEecchhHH
Q psy7365         279 STVILDEPTSGVDPYSRRSI-WELLIKVYYASHSLSGRTVILTTHYMDEA  327 (601)
Q Consensus       279 ~~liLDEPtsgLD~~~~~~l-~~~l~~l~~~~~~~~G~TVI~~tHdl~~~  327 (601)
                      .++|+||+..|=+|.....+ +.++..+.    ...+..++++||..+..
T Consensus       122 sLvliDE~~~gT~~~eg~~l~~a~l~~l~----~~~~~~~i~tTH~~~l~  167 (234)
T d1wb9a2         122 SLVLMDEIGRGTSTYDGLSLAWACAENLA----NKIKALTLFATHYFELT  167 (234)
T ss_dssp             EEEEEESCCCCSSSSHHHHHHHHHHHHHH----HTTCCEEEEECSCGGGG
T ss_pred             cEEeecccccCCChhhhhHHHHHhhhhhh----ccccceEEEecchHHHh
Confidence            68999999999999877666 55666663    22456788899976543

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=94.01  E-value=0.063  Score=50.35  Aligned_cols=45  Identities=22%  Similarity=0.276  Sum_probs=33.6

Q ss_pred             cEEEEecCCCCCCHHHHHHH-HHHHHHHhhhccccCCcEEEEEecchhHHH
Q psy7365         279 STVILDEPTSGVDPYSRRSI-WELLIKVYYASHSLSGRTVILTTHYMDEAD  328 (601)
Q Consensus       279 ~~liLDEPtsgLD~~~~~~l-~~~l~~l~~~~~~~~G~TVI~~tHdl~~~~  328 (601)
                      .++++||+..|=||.....+ +.++..+.     ..+..++++||..+...
T Consensus       116 sLvliDE~~~gT~~~eg~ala~aile~L~-----~~~~~~i~tTH~~eL~~  161 (224)
T d1ewqa2         116 SLVLLDEVGRGTSSLDGVAIATAVAEALH-----ERRAYTLFATHYFELTA  161 (224)
T ss_dssp             EEEEEESTTTTSCHHHHHHHHHHHHHHHH-----HHTCEEEEECCCHHHHT
T ss_pred             cEEeecccccCcchhhhcchHHHHHHHHh-----hcCcceEEeeechhhhh
Confidence            68999999999999876555 55566653     23678899999876543

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.83  E-value=0.15  Score=47.99  Aligned_cols=50  Identities=20%  Similarity=0.355  Sum_probs=38.9

Q ss_pred             HhCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHhC-CcEEEEEccChhHHH
Q psy7365         445 LLGNTPLIFLDEPTSGMDPGARRFL-WTCIERAVSE-GRCVILTSHNMEECE  494 (601)
Q Consensus       445 L~~~P~lLlLDEPTsGLD~~~~~~i-~~lL~~l~~~-G~tVllsTHdl~e~~  494 (601)
                      -+.+..++|+||+..|=+|.....+ +.+++.+..+ +..++++||..+...
T Consensus       117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~  168 (234)
T d1wb9a2         117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ  168 (234)
T ss_dssp             HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred             hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHhh
Confidence            4556679999999999999988776 5567777655 567899999876543

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=80.78  E-value=0.13  Score=43.39  Aligned_cols=14  Identities=43%  Similarity=0.755  Sum_probs=9.7

Q ss_pred             ecccCCCCCCCccccc
Q psy7365          77 QPLGPSGITLGLHTLG   92 (601)
Q Consensus        77 ~~~g~~g~~~g~~~~g   92 (601)
                      .-+||+|+  ||||+|
T Consensus         6 ~l~G~~Gs--GKSTva   19 (169)
T d1kaga_           6 FLVGPMGA--GKSTIG   19 (169)
T ss_dssp             EEECCTTS--CHHHHH
T ss_pred             EEECCCCC--CHHHHH
Confidence            34799999  566553