Psyllid ID: psy7367

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
Protein Sequence
MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQLQAEDIGLDGDRIRG
Secondary Structure (PSIPRED)
cEEEEEEEEccccccEEEcEEEEEEcccEEEEEccccccHHHHHHHHHcccccccEEEEEEccccHHcHHHHHHHcccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHcccEEEEcccccHHHHHcccEEEEEEccEEEEEccHHHHHHcccccEEEEEEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEccccEEEEEcEEEEEcccEEEEEEccccccHHHHHHHHHccccccccEEEEcccEcccccccccccHHEEEEHEcccccccHHHHHccccccccccHHHHHHHHHHHHHHHcHHHHHHcccHHcccHHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHccEEEEEEccEEEEEEcHHHHHHccccccEEccccccEEEEEEEEcccccEccc
Coil and Loop (DISEMBL)
maiqnlskrfpngklavnglnvnfYEDQITSflghngagktTTISMLMGmlpvssgtakiynhdirTDMTTIRRslgvcpqynaLFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDlgiphkrtsLANTLSGGMQRKLSVAMAFIGgsrtvildeptsgvdpysrRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGklqccgssvflknsfARGYYLSLDMKSAQLQAedigldgdrirg
Flexible Loop (DISEMBL)
maiqnlskrfpngklAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSrtvildeptsgvdpysrrSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMksaqlqaedigldgdrirg
Low Complexity Region (SEG)
MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQLQAEDIGLDGDRIRG
Disordered region (IsUnstruct)
************GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMK******************
Disordered Region (DISOPRED)
MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSL****SGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSA*********DGDRI**
Disordered Region (DISEMBL)
MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQLQAEDIGLDGDRIRG
Disordered Region (DISPRO)
MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQLQAEDIGLDG*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQLQAEDIGLDGDRIRG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	251	2.2.26 [Sep-21-2011]
Q9ESR9	2434	ATP-binding cassette sub-	yes	N/A	0.940	0.096	0.607	3e-86
P41234	2434	ATP-binding cassette sub-	yes	N/A	0.940	0.096	0.607	6e-86
Q9BZC7	2435	ATP-binding cassette sub-	yes	N/A	0.860	0.088	0.632	9e-86
O95477	2261	ATP-binding cassette sub-	no	N/A	0.940	0.104	0.634	2e-85
P41233	2261	ATP-binding cassette sub-	no	N/A	0.940	0.104	0.630	3e-85
O35600	2310	Retinal-specific ATP-bind	no	N/A	0.980	0.106	0.591	5e-83
P78363	2273	Retinal-specific ATP-bind	no	N/A	0.980	0.108	0.595	7e-83
Q7TNJ2	2170	ATP-binding cassette sub-	no	N/A	0.996	0.115	0.561	8e-80
Q91V24	2159	ATP-binding cassette sub-	no	N/A	0.996	0.115	0.561	4e-79
Q8IZY2	2146	ATP-binding cassette sub-	no	N/A	0.916	0.107	0.567	1e-78

>sp|Q9ESR9|ABCA2_RAT ATP-binding cassette sub-family A member 2 OS=Rattus norvegicus GN=Abca2 PE=1 SV=1

 Score =  317 bits (813), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 144/237 (60%), Positives = 195/237 (82%), Gaps = 1/237 (0%)

Query: 1    MAIQNLSKRFPNGK-LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
            + +  L+K + N K LA+N L++N YE+Q+ SFLGHNGAGKTTT+S+L G+ P +SG+A 
Sbjct: 990  VCVDKLTKVYKNDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSAT 1049

Query: 60   IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
            IY HDIRT+M  IR++LG+CPQ+N LFD+LTVEEH+WFYS+LK + ++  + E+  MI D
Sbjct: 1050 IYGHDIRTEMDEIRKNLGMCPQHNVLFDQLTVEEHLWFYSRLKSMAQEEIRKEMDKMIED 1109

Query: 120  LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
            L + +KR SL  TLSGGM+RKLSVA+AF+GGSR +ILDEPT+GVDPY+RR+IW+L++KYK
Sbjct: 1110 LELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILKYK 1169

Query: 180  KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQ 236
             GRT++L+TH+MDEADLLGDRIAII+ GKL+CCGS +FLK ++  GY L+L  + A+
Sbjct: 1170 PGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGAYGDGYRLTLVKRPAE 1226

Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development.
Rattus norvegicus (taxid: 10116)

>sp|P41234|ABCA2_MOUSE ATP-binding cassette sub-family A member 2 OS=Mus musculus GN=Abca2 PE=1 SV=4

 Score =  317 bits (812), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 144/237 (60%), Positives = 194/237 (81%), Gaps = 1/237 (0%)

Query: 1    MAIQNLSKRFPNGK-LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
            + +  L+K + N K LA+N L++N YE+Q+ SFLGHNGAGKTTT+S+L G+ P +SG+A 
Sbjct: 990  VCVDKLTKVYKNDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSAT 1049

Query: 60   IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
            IY HDIRT+M  IR++LG+CPQ+N LFD+LTVEEH+WFYS+LK + ++  + E   MI D
Sbjct: 1050 IYGHDIRTEMDEIRKNLGMCPQHNVLFDRLTVEEHLWFYSRLKSMAQEEIRKETDKMIED 1109

Query: 120  LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
            L + +KR SL  TLSGGM+RKLSVA+AF+GGSR +ILDEPT+GVDPY+RR+IW+L++KYK
Sbjct: 1110 LELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILKYK 1169

Query: 180  KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQ 236
             GRT++L+TH+MDEADLLGDRIAII+ GKL+CCGS +FLK ++  GY L+L  + A+
Sbjct: 1170 PGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGAYGDGYRLTLVKQPAE 1226

Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development.

Mus musculus (taxid: 10090)

>sp|Q9BZC7|ABCA2_HUMAN ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3

 Score =  316 bits (810), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 141/223 (63%), Positives = 188/223 (84%)

Query: 14   KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIR 73
            KLA+N L++N YE+Q+ SFLGHNGAGKTTT+S+L G+ P +SG+A IY HDIRT+M  IR
Sbjct: 1004 KLALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSATIYGHDIRTEMDEIR 1063

Query: 74   RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTL 133
            ++LG+CPQ+N LFD+LTVEEH+WFYS+LK + ++  + E+  MI DL + +KR SL  TL
Sbjct: 1064 KNLGMCPQHNVLFDRLTVEEHLWFYSRLKSMAQEEIRREMDKMIEDLELSNKRHSLVQTL 1123

Query: 134  SGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDE 193
            SGGM+RKLSVA+AF+GGSR +ILDEPT+GVDPY+RR+IW+L++KYK GRT++L+TH+MDE
Sbjct: 1124 SGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILKYKPGRTILLSTHHMDE 1183

Query: 194  ADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQ 236
            ADLLGDRIAII+ GKL+CCGS +FLK ++  GY L+L  + A+
Sbjct: 1184 ADLLGDRIAIISHGKLKCCGSPLFLKGTYGDGYRLTLVKRPAE 1226

Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development.

Homo sapiens (taxid: 9606)

>sp|O95477|ABCA1_HUMAN ATP-binding cassette sub-family A member 1 OS=Homo sapiens GN=ABCA1 PE=1 SV=3

 Score =  315 bits (807), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 151/238 (63%), Positives = 194/238 (81%), Gaps = 2/238 (0%)

Query: 1    MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
            ++IQNL K + +G K+AV+GL +NFYE QITSFLGHNGAGKTTT+S+L G+ P +SGTA 
Sbjct: 899  VSIQNLVKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAY 958

Query: 60   IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
            I   DIR++M+TIR++LGVCPQ+N LFD LTVEEH+WFY++LK + +   + E+  M +D
Sbjct: 959  ILGKDIRSEMSTIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKHVKAEMEQMALD 1018

Query: 120  LGIPH-KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY 178
            +G+P  K  S  + LSGGMQRKLSVA+AF+GGS+ VILDEPT+GVDPYSRR IWELL+KY
Sbjct: 1019 VGLPSSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKY 1078

Query: 179  KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQ 236
            ++GRT+IL+TH+MDEAD+LGDRIAII+ GKL C GSS+FLKN    GYYL+L  K  +
Sbjct: 1079 RQGRTIILSTHHMDEADVLGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVE 1136

cAMP-dependent and sulfonylurea-sensitive anion transporter. Key gatekeeper influencing intracellular cholesterol transport.

Homo sapiens (taxid: 9606)

>sp|P41233|ABCA1_MOUSE ATP-binding cassette sub-family A member 1 OS=Mus musculus GN=Abca1 PE=1 SV=4

 Score =  314 bits (805), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 150/238 (63%), Positives = 194/238 (81%), Gaps = 2/238 (0%)

Query: 1    MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
            ++IQNL K + +G K+AV+GL +NFYE QITSFLGHNGAGKTTT+S+L G+ P +SGTA 
Sbjct: 899  VSIQNLVKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAY 958

Query: 60   IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
            I   DIR++M++IR++LGVCPQ+N LFD LTVEEH+WFY++LK + +   + E+  M +D
Sbjct: 959  ILGKDIRSEMSSIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKHVKAEMEQMALD 1018

Query: 120  LGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY 178
            +G+P  K  S  + LSGGMQRKLSVA+AF+GGS+ VILDEPT+GVDPYSRR IWELL+KY
Sbjct: 1019 VGLPPSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKY 1078

Query: 179  KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQ 236
            ++GRT+IL+TH+MDEAD+LGDRIAII+ GKL C GSS+FLKN    GYYL+L  K  +
Sbjct: 1079 RQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVE 1136

cAMP-dependent and sulfonylurea-sensitive anion transporter. Key gatekeeper influencing intracellular cholesterol transport.

Mus musculus (taxid: 10090)

>sp|O35600|ABCA4_MOUSE Retinal-specific ATP-binding cassette transporter OS=Mus musculus GN=Abca4 PE=2 SV=1

 Score =  307 bits (786), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 146/247 (59%), Positives = 192/247 (77%), Gaps = 1/247 (0%)

Query: 1    MAIQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
            + ++NL K F P+G+ AV+ LN+ FYE+QIT+FLGHNGAGKTTT+S+L G+LP +SGT  
Sbjct: 929  VCVKNLVKVFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVL 988

Query: 60   IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
            I   DI T++  +R+SLG+CPQ+N LF  LTV EH+ FY+QLK    + AQLE+  M+ D
Sbjct: 989  IGGKDIETNLDVVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLED 1048

Query: 120  LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
             G+ HKR   A  LSGGMQRKLSVA+AF+G S+ V+LDEPTSGVDPYSRRSIW+LL+KY+
Sbjct: 1049 TGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDSKVVVLDEPTSGVDPYSRRSIWDLLLKYR 1108

Query: 180  KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQLQA 239
             GRT+I++TH+MDEADLLGDRIAII+ G+L C G+ +FLKN F  G+YL+L  K   +Q+
Sbjct: 1109 SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVRKMKNIQS 1168

Query: 240  EDIGLDG 246
            +  G +G
Sbjct: 1169 QRGGCEG 1175

In the visual cycle, acts as an inward-directed retinoid flipase, retinoid substrates imported by ABCA4 from the extracellular or intradiscal (rod) membrane surfaces to the cytoplasmic membrane surface are all-trans-retinaldehyde (ATR) and N-retinyl-phosphatidyl-ethanolamine (NR-PE). Once transported to the cytoplasmic surface, ATR is reduced to vitamin A by trans-retinol dehydrogenase (tRDH) and then transferred to the retinal pigment epithelium (RPE) where it is converted to 11-cis-retinal. May play a role in photoresponse, removing ATR/NR-PE from the extracellular photoreceptor surfaces during bleach recovery.

Mus musculus (taxid: 10090)

>sp|P78363|ABCA4_HUMAN Retinal-specific ATP-binding cassette transporter OS=Homo sapiens GN=ABCA4 PE=1 SV=3

 Score =  306 bits (785), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 147/247 (59%), Positives = 190/247 (76%), Gaps = 1/247 (0%)

Query: 1    MAIQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
            + ++NL K F P G+ AV+ LN+ FYE+QIT+FLGHNGAGKTTT+S+L G+LP +SGT  
Sbjct: 929  VCVKNLVKIFEPCGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVL 988

Query: 60   IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
            +   DI T +  +R+SLG+CPQ+N LF  LTV EHM FY+QLK   ++ AQLE+  M+ D
Sbjct: 989  VGGRDIETSLDAVRQSLGMCPQHNILFHHLTVAEHMLFYAQLKGKSQEEAQLEMEAMLED 1048

Query: 120  LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
             G+ HKR   A  LSGGMQRKLSVA+AF+G ++ VILDEPTSGVDPYSRRSIW+LL+KY+
Sbjct: 1049 TGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVILDEPTSGVDPYSRRSIWDLLLKYR 1108

Query: 180  KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQLQA 239
             GRT+I++TH+MDEADLLGDRIAIIA G+L C G+ +FLKN F  G YL+L  K   +Q+
Sbjct: 1109 SGRTIIMSTHHMDEADLLGDRIAIIAQGRLYCSGTPLFLKNCFGTGLYLTLVRKMKNIQS 1168

Query: 240  EDIGLDG 246
            +  G +G
Sbjct: 1169 QRKGSEG 1175

In the visual cycle, acts as an inward-directed retinoid flipase, retinoid substrates imported by ABCA4 from the extracellular or intradiscal (rod) membrane surfaces to the cytoplasmic membrane surface are all-trans-retinaldehyde (ATR) and N-retinyl-phosphatidyl-ethanolamine (NR-PE). Once transported to the cytoplasmic surface, ATR is reduced to vitamin A by trans-retinol dehydrogenase (tRDH) and then transferred to the retinal pigment epithelium (RPE) where it is converted to 11-cis-retinal. May play a role in photoresponse, removing ATR/NR-PE from the extracellular photoreceptor surfaces during bleach recovery.

Homo sapiens (taxid: 9606)

>sp|Q7TNJ2|ABCA7_RAT ATP-binding cassette sub-family A member 7 OS=Rattus norvegicus GN=Abca7 PE=1 SV=1

 Score =  296 bits (758), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 141/251 (56%), Positives = 186/251 (74%), Gaps = 1/251 (0%)

Query: 1    MAIQNLSKRFP-NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
            ++I+ L K F  + + A+ GLN++FYE  IT+FLGHNGAGKTTT+S+L G+ P SSG+A 
Sbjct: 805  VSIRGLKKHFRGSPQPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSAS 864

Query: 60   IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
            I  HD++T+M  IR  LG+CPQYN LFD LTVEEH+WFY +LK V       E  ++I D
Sbjct: 865  ILGHDVQTNMAAIRPHLGICPQYNVLFDMLTVEEHVWFYGRLKGVSAAAIDSEQEHLIRD 924

Query: 120  LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
            +G+  KR +    LSGGMQRKLSVA+AF+GGSR VI+DEPT+GVDP SRR IWELL+KY+
Sbjct: 925  VGLIPKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYR 984

Query: 180  KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQLQA 239
            +GRT+IL+TH++DEA+LLGDR+A++A+G L CCGS +FL+     GYYL+L   S  L  
Sbjct: 985  EGRTLILSTHHLDEAELLGDRVAMVASGSLCCCGSPLFLRRHLGCGYYLTLVKSSQSLVT 1044

Query: 240  EDIGLDGDRIR 250
             D+  D +  R
Sbjct: 1045 HDLKGDTEDPR 1055

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Rattus norvegicus (taxid: 10116)

>sp|Q91V24|ABCA7_MOUSE ATP-binding cassette sub-family A member 7 OS=Mus musculus GN=Abca7 PE=1 SV=1

 Score =  294 bits (753), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 141/251 (56%), Positives = 182/251 (72%), Gaps = 1/251 (0%)

Query: 1    MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
            ++I+ L K F    + A+ GLN++FYE  IT+FLGHNGAGKTTT+S+L G+ P SSG+A 
Sbjct: 804  VSIRGLKKHFRGCPQPALQGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGSAS 863

Query: 60   IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
            I  HD++T+M  IR  LG+CPQYN LFD LTVEEH+WFY +LK V       E   +I D
Sbjct: 864  ILGHDVQTNMAAIRPHLGICPQYNVLFDMLTVEEHVWFYGRLKGVSAAAMGPERERLIRD 923

Query: 120  LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
            +G+  KR +    LSGGMQRKLSVA+AF+GGSR VI+DEPT+GVDP SRR IWELL+KY+
Sbjct: 924  VGLTLKRDTQTRHLSGGMQRKLSVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELLLKYR 983

Query: 180  KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQLQA 239
            +GRT+IL+TH++DEA+LLGDR+A++A G L CCGS +FL+     GYYL+L   S  L  
Sbjct: 984  EGRTLILSTHHLDEAELLGDRVAMVAGGSLCCCGSPLFLRRHLGCGYYLTLVKSSQSLVT 1043

Query: 240  EDIGLDGDRIR 250
             D   D +  R
Sbjct: 1044 HDAKGDSEDPR 1054

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Mus musculus (taxid: 10090)

>sp|Q8IZY2|ABCA7_HUMAN ATP-binding cassette sub-family A member 7 OS=Homo sapiens GN=ABCA7 PE=1 SV=3

 Score =  292 bits (748), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 131/231 (56%), Positives = 179/231 (77%), Gaps = 1/231 (0%)

Query: 1    MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
            +++++L KRFP   + A+ GL+++FY+  IT+FLGHNGAGKTTT+S+L G+ P S G+A 
Sbjct: 807  VSVRSLEKRFPGSPQPALRGLSLDFYQGHITAFLGHNGAGKTTTLSILSGLFPPSGGSAF 866

Query: 60   IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
            I  HD+R+ M  IR  LGVCPQYN LFD LTV+EH+WFY +LK +   +   E   ++ D
Sbjct: 867  ILGHDVRSSMAAIRPHLGVCPQYNVLFDMLTVDEHVWFYGRLKGLSAAVVGPEQDRLLQD 926

Query: 120  LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
            +G+  K++     LSGGMQRKLSVA+AF+GGS+ VILDEPT+GVDP SRR IWELL+KY+
Sbjct: 927  VGLVSKQSVQTRHLSGGMQRKLSVAIAFVGGSQVVILDEPTAGVDPASRRGIWELLLKYR 986

Query: 180  KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSL 230
            +GRT+IL+TH++DEA+LLGDR+A++A G+L CCGS +FL+     GYYL+L
Sbjct: 987  EGRTLILSTHHLDEAELLGDRVAVVAGGRLCCCGSPLFLRRHLGSGYYLTL 1037

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
443734953	2255	hypothetical protein CAPTEDRAFT_226736 [	0.916	0.101	0.653	5e-87
126302651	2434	PREDICTED: ATP-binding cassette sub-fami	0.940	0.096	0.624	5e-87
395506504	2507	PREDICTED: ATP-binding cassette sub-fami	0.940	0.094	0.624	7e-87
301608938	2264	PREDICTED: ATP-binding cassette sub-fami	0.916	0.101	0.649	1e-86
327263999	2259	PREDICTED: ATP-binding cassette sub-fami	0.928	0.103	0.645	2e-86
45383826	2260	ATP-binding cassette sub-family A member	0.928	0.103	0.645	3e-86
224088531	2261	PREDICTED: ATP-binding cassette sub-fami	0.928	0.103	0.645	3e-86
395515458	2261	PREDICTED: ATP-binding cassette sub-fami	0.928	0.103	0.641	6e-86
334333485	2255	PREDICTED: ATP-binding cassette sub-fami	0.928	0.103	0.645	7e-86
390357785	2012	PREDICTED: ATP-binding cassette sub-fami	0.936	0.116	0.635	2e-85

>gi|443734953|gb|ELU18808.1| hypothetical protein CAPTEDRAFT_226736 [Capitella teleta]

 Score =  326 bits (836), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 151/231 (65%), Positives = 192/231 (83%), Gaps = 1/231 (0%)

Query: 1    MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
            ++IQ L K +  G K+AV+GLN+NFYE QITSFLGHNGAGKTTT+S+L G+ P + GTA 
Sbjct: 895  VSIQKLCKVYKRGQKVAVDGLNLNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTEGTAV 954

Query: 60   IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
            IY  DIRTD+  IR+SLG+CPQ+N LFD LTVEEH+WFYS LK +P++  + E++ MI+D
Sbjct: 955  IYGQDIRTDINEIRKSLGMCPQHNVLFDHLTVEEHIWFYSSLKGMPEEDIRKEMNAMIMD 1014

Query: 120  LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
            +G+PHKR   +  LSGGM+RKLSVA+AF  GS+ VILDEPT+GVDPY+RRSIW+LL+KY+
Sbjct: 1015 IGLPHKRNEYSAKLSGGMKRKLSVAIAFTAGSKVVILDEPTAGVDPYARRSIWDLLLKYR 1074

Query: 180  KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSL 230
             GRT+IL+TH+MDEAD+LGDRIAII  GKL C GSS+FLK++F  GYYL+L
Sbjct: 1075 AGRTIILSTHFMDEADILGDRIAIINQGKLCCVGSSLFLKSNFGGGYYLTL 1125

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|126302651|ref|XP_001366944.1| PREDICTED: ATP-binding cassette sub-family A member 2 isoform 2 [Monodelphis domestica]

 Score =  326 bits (836), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 148/237 (62%), Positives = 197/237 (83%), Gaps = 1/237 (0%)

Query: 1    MAIQNLSKRFPNGK-LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
            + +  L+K + N K +A+N L++N YE+Q+ SFLGHNGAGKTTT+S+L G+ P +SG+A 
Sbjct: 982  VCVDKLTKVYKNDKKMALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSAT 1041

Query: 60   IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
            IY HDIRT+M  IR++LG+CPQ+N LFDKLTVEEH+WFYSQLK + K+  Q E+  MI D
Sbjct: 1042 IYGHDIRTEMDEIRKNLGMCPQHNVLFDKLTVEEHLWFYSQLKSMAKEEIQKEMDKMIED 1101

Query: 120  LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
            L + +KR SL  TLSGGM+RKLSVA+AF+GGSR +ILDEPT+GVDPY+RR+IW+L++KYK
Sbjct: 1102 LELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILKYK 1161

Query: 180  KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQ 236
             GRT++L+TH+MDEADLLGDRIAII+ GKL+CCGSS+FLK+++  GY L+L  + A+
Sbjct: 1162 PGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSSLFLKSTYGDGYRLTLVKRQAE 1218

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395506504|ref|XP_003757572.1| PREDICTED: ATP-binding cassette sub-family A member 2 [Sarcophilus harrisii]

 Score =  326 bits (835), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 148/237 (62%), Positives = 197/237 (83%), Gaps = 1/237 (0%)

Query: 1    MAIQNLSKRFPNGK-LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
            + +  L+K + N K +A+N L++N YE+Q+ SFLGHNGAGKTTT+S+L G+ P +SG+A 
Sbjct: 1055 VCVDKLTKVYKNDKKMALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSAT 1114

Query: 60   IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
            IY HDIRT+M  IR++LG+CPQ+N LFDKLTVEEH+WFYSQLK + K+  Q E+  MI D
Sbjct: 1115 IYGHDIRTEMDEIRKNLGMCPQHNVLFDKLTVEEHLWFYSQLKSMAKEEIQKEMDKMIED 1174

Query: 120  LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
            L + +KR SL  TLSGGM+RKLSVA+AF+GGSR +ILDEPT+GVDPY+RR+IW+L++KYK
Sbjct: 1175 LELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILKYK 1234

Query: 180  KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQ 236
             GRT++L+TH+MDEADLLGDRIAII+ GKL+CCGSS+FLK+++  GY L+L  + A+
Sbjct: 1235 PGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSSLFLKSTYGDGYRLTLVKRQAE 1291

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301608938|ref|XP_002934028.1| PREDICTED: ATP-binding cassette sub-family A member 1-like [Xenopus (Silurana) tropicalis]

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 150/231 (64%), Positives = 193/231 (83%), Gaps = 1/231 (0%)

Query: 1    MAIQNLSKRFPNGK-LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
            ++IQNL K + NGK +AV+GL +NFYE QITSFLGHNGAGKTTT+S+L G+ P ++GTA 
Sbjct: 905  VSIQNLVKIYRNGKKVAVDGLTLNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTTGTAY 964

Query: 60   IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
            I   DIRT++ +IR++LGVCPQ+N LFD LTVEEH+WFY++LK + ++  + E+  M+ D
Sbjct: 965  IMKKDIRTELNSIRQNLGVCPQHNVLFDALTVEEHIWFYARLKGLSEEKVKAEMEQMVND 1024

Query: 120  LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
            +G+PHK+    + LSGGMQRKLSVA+AF+GGS+ VILDEPT+GVDPYSRR IWELLIKY+
Sbjct: 1025 VGLPHKKKYKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLIKYR 1084

Query: 180  KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSL 230
            +GRT+IL+TH+MDEAD+LGDRIAII+ GKL C GSS+FLKN    GYYL+L
Sbjct: 1085 QGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTL 1135

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327263999|ref|XP_003216804.1| PREDICTED: ATP-binding cassette sub-family A member 1-like [Anolis carolinensis]

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 151/234 (64%), Positives = 194/234 (82%), Gaps = 1/234 (0%)

Query: 1    MAIQNLSKRFPNGK-LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
            ++IQ L K + +GK LA++GL +NFYE QI+SFLGHNGAGKTTT+S+L G+ P +SGTA 
Sbjct: 899  VSIQKLVKVYRDGKKLAIDGLTLNFYEGQISSFLGHNGAGKTTTMSILTGLFPPTSGTAF 958

Query: 60   IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
            I   DIRT+++TIR++LGVCPQ+N LFD+LTVEEH+WFY++LK +   L + E+  M +D
Sbjct: 959  ILGKDIRTELSTIRQNLGVCPQHNVLFDELTVEEHIWFYARLKGLSAKLVKKEMEQMAID 1018

Query: 120  LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
            +G+PHK  S  + LSGGMQRKLSVA+AF+GGS+ VILDEPT+GVDPYSRR IWELL+KY+
Sbjct: 1019 VGLPHKLKSKTSKLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYR 1078

Query: 180  KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMK 233
            +GRT+IL+TH+MDEAD+LGDRIAII+ GKL C GSS+FLKN    GYYL+L  K
Sbjct: 1079 QGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKK 1132

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|45383826|ref|NP_989476.1| ATP-binding cassette sub-family A member 1 [Gallus gallus] gi|18028983|gb|AAL56247.1|AF362377_1 ATP-binding cassette transporter 1 [Gallus gallus]

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 151/234 (64%), Positives = 195/234 (83%), Gaps = 1/234 (0%)

Query: 1    MAIQNLSKRFPNGK-LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
            ++IQNL K + +GK +AV+GL +NFYE QITSFLGHNGAGKTTT+S+L G+ P +SGTA 
Sbjct: 900  VSIQNLVKVYRDGKKVAVDGLTLNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAF 959

Query: 60   IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
            I   DIR++++TIR++LGVCPQ+N LFD LTVEEH+WFY++LK +P+   + E+  M +D
Sbjct: 960  ILGKDIRSELSTIRQNLGVCPQHNVLFDLLTVEEHIWFYARLKGLPEKKVKEEMEQMAMD 1019

Query: 120  LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
            +G+PHK  +  + LSGGMQRKLSVA+AF+GGS+ VILDEPT+GVDPYSRR IWELL+KY+
Sbjct: 1020 VGLPHKLKARTSKLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYR 1079

Query: 180  KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMK 233
            +GRT+IL+TH+MDEAD+LGDRIAII+ GKL C GSS+FLKN    GYYL+L  K
Sbjct: 1080 QGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKK 1133

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|224088531|ref|XP_002190956.1| PREDICTED: ATP-binding cassette sub-family A member 1 [Taeniopygia guttata]

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 151/234 (64%), Positives = 194/234 (82%), Gaps = 1/234 (0%)

Query: 1    MAIQNLSKRFPNGK-LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
            ++IQNL K + +GK +AV+GL +NFYE QITSFLGHNGAGKTTT+S+L G+ P +SGTA 
Sbjct: 900  VSIQNLVKVYRDGKKVAVDGLTLNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAF 959

Query: 60   IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
            I   DIR++++TIR++LGVCPQ+N LFD LTVEEH+WFY++LK +P+   + E+  M  D
Sbjct: 960  ILGKDIRSELSTIRQNLGVCPQHNVLFDLLTVEEHIWFYARLKGLPEKKVKEEMEQMAAD 1019

Query: 120  LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
            +G+PHK  +  + LSGGMQRKLSVA+AF+GGS+ VILDEPT+GVDPYSRR IWELL+KY+
Sbjct: 1020 VGLPHKLKARTSKLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYR 1079

Query: 180  KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMK 233
            +GRT+IL+TH+MDEAD+LGDRIAII+ GKL C GSS+FLKN    GYYL+L  K
Sbjct: 1080 QGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKK 1133

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395515458|ref|XP_003761921.1| PREDICTED: ATP-binding cassette sub-family A member 1 [Sarcophilus harrisii]

 Score =  322 bits (826), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 150/234 (64%), Positives = 195/234 (83%), Gaps = 1/234 (0%)

Query: 1    MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
            ++IQNL K + +G K+AV+GL +NFYE QITSFLGHNGAGKTTT+S+L G+ P +SGTA 
Sbjct: 900  VSIQNLVKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAY 959

Query: 60   IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
            I   DIR++++TIR++LGVCPQ+N LFD LTVEEH+WFY++LK + +   + E+  M++D
Sbjct: 960  ILGKDIRSELSTIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKCVKEEMEQMVLD 1019

Query: 120  LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
            +G+PHK  +  + LSGGMQRKLSVA+AF+GGS+ VILDEPT+GVDPYSRR IWELL+KY+
Sbjct: 1020 VGLPHKLKTKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYR 1079

Query: 180  KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMK 233
            +GRT+IL+TH+MDEAD+LGDRIAII+ GKL C GSS+FLKN    GYYL+L  K
Sbjct: 1080 QGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKK 1133

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|334333485|ref|XP_001368140.2| PREDICTED: ATP-binding cassette sub-family A member 1 [Monodelphis domestica]

 Score =  322 bits (826), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 151/234 (64%), Positives = 195/234 (83%), Gaps = 1/234 (0%)

Query: 1    MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
            ++IQNL K + +G K+AV+GL +NFYE QITSFLGHNGAGKTTT+S+L G+ P +SGTA 
Sbjct: 894  VSIQNLVKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAY 953

Query: 60   IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
            I   DIR++++TIR++LGVCPQ+N LFD LTVEEH+WFY++LK + +   + E+  M++D
Sbjct: 954  ILGKDIRSELSTIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKSVKEEMQQMVLD 1013

Query: 120  LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
            +G+PHK  S  + LSGGMQRKLSVA+AF+GGS+ VILDEPT+GVDPYSRR IWELL+KY+
Sbjct: 1014 VGLPHKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYR 1073

Query: 180  KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMK 233
            +GRT+IL+TH+MDEAD+LGDRIAII+ GKL C GSS+FLKN    GYYL+L  K
Sbjct: 1074 QGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKK 1127

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390357785|ref|XP_798273.3| PREDICTED: ATP-binding cassette sub-family A member 2, partial [Strongylocentrotus purpuratus]

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 150/236 (63%), Positives = 194/236 (82%), Gaps = 1/236 (0%)

Query: 1   MAIQNLSKRFPNGK-LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           + I+NL+K +  GK LAVN L +N YE QITSFLGHNGAGKTTT+S+L G+ P +SGTAK
Sbjct: 762 VTIENLTKIYSTGKKLAVNNLCLNLYEGQITSFLGHNGAGKTTTMSVLTGLFPPTSGTAK 821

Query: 60  IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
           IY  DIRTDMT IR+SLG+CPQ+NALFDKLTVE+H+WFY+QLK  P    + E   +I D
Sbjct: 822 IYGQDIRTDMTAIRKSLGMCPQHNALFDKLTVEDHVWFYAQLKGKPTWQIKEETDKLISD 881

Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
           +G+ HKR +  + LSGGM+R+LSVA+AF+GGSRTVILDEPT+GVDP +RR+IW+LL+KYK
Sbjct: 882 IGLTHKRKTAVHRLSGGMKRRLSVAIAFVGGSRTVILDEPTAGVDPCARRAIWDLLLKYK 941

Query: 180 KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSA 235
            GRT++L+TH+MDEAD LGDRIAII+ G+++C GSS+FLK ++  GY+L++  K A
Sbjct: 942 HGRTILLSTHHMDEADFLGDRIAIISHGQVKCAGSSMFLKTTYGDGYHLTVVKKPA 997

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
ZFIN|ZDB-GENE-031006-12	2268	abca1a "ATP-binding cassette,	0.944	0.104	0.641	2.6e-80
UNIPROTKB|E1C619	2225	E1C619 "Uncharacterized protei	0.928	0.104	0.645	1.2e-78
UNIPROTKB|E1C2W8	2255	E1C2W8 "Uncharacterized protei	0.928	0.103	0.645	1.3e-78
UNIPROTKB|H0Y8C9	1066	ABCA2 "ATP-binding cassette su	0.940	0.221	0.603	4.8e-78
UNIPROTKB|F1SP55	1293	ABCA1 "Uncharacterized protein	0.940	0.182	0.634	1.2e-77
UNIPROTKB|G3N055	2108	ABCA2 "Uncharacterized protein	0.940	0.111	0.607	4.4e-77
UNIPROTKB|G3MWN6	2111	ABCA2 "Uncharacterized protein	0.940	0.111	0.607	4.4e-77
UNIPROTKB|H0Y8D6	1441	ABCA2 "ATP-binding cassette su	0.940	0.163	0.603	5.4e-77
UNIPROTKB|F1MG24	2261	ABCA1 "Uncharacterized protein	0.940	0.104	0.634	6.5e-77
RGD|620238	2434	Abca2 "ATP-binding cassette, s	0.940	0.096	0.607	7.4e-77

ZFIN|ZDB-GENE-031006-12 abca1a "ATP-binding cassette, sub-family A (ABC1), member 1A" [Danio rerio (taxid:7955)]

 Score = 821 (294.1 bits), Expect = 2.6e-80, P = 2.6e-80
 Identities = 152/237 (64%), Positives = 193/237 (81%)

Query:     3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
             I+NL K + NGK+AV+GL + FYE QITSFLGHNGAGKTTT+S+L G+ P +SGTA I  
Sbjct:   906 IENLMKIYSNGKVAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYIQG 965

Query:    63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
              DIRTD+  IR++LGVCPQ+N LF  LTVEEH+WFY++LK +  +  + E+  +++DLG+
Sbjct:   966 KDIRTDLNAIRQNLGVCPQHNVLFSMLTVEEHIWFYARLKGLSAEKVKSEMEQIVMDLGL 1025

Query:   123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGR 182
             PHKRTS +N LSGGMQRKLSVA+AF+GGS+ VILDEPT+GVDPY+RR IW+LL+KY++GR
Sbjct:  1026 PHKRTSRSNQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRQGR 1085

Query:   183 TVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQLQA 239
             T+IL+TH+MDEAD+LGDRIAII+ GKL C GSS+FLK     GYYL+L  K   L A
Sbjct:  1086 TIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKKDFDLSA 1142

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E1C619 E1C619 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 805 (288.4 bits), Expect = 1.2e-78, P = 1.2e-78
 Identities = 151/234 (64%), Positives = 195/234 (83%)

Query:     1 MAIQNLSKRFPNGK-LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
             ++IQNL K + +GK +AV+GL +NFYE QITSFLGHNGAGKTTT+S+L G+ P +SGTA 
Sbjct:   902 VSIQNLVKVYRDGKKVAVDGLTLNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAF 961

Query:    60 IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
             I   DIR++++TIR++LGVCPQ+N LFD LTVEEH+WFY++LK +P+   + E+  M +D
Sbjct:   962 ILGKDIRSELSTIRQNLGVCPQHNVLFDLLTVEEHIWFYARLKGLPEKKVKEEMEQMAMD 1021

Query:   120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
             +G+PHK  +  + LSGGMQRKLSVA+AF+GGS+ VILDEPT+GVDPYSRR IWELL+KY+
Sbjct:  1022 VGLPHKLKARTSKLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYR 1081

Query:   180 KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMK 233
             +GRT+IL+TH+MDEAD+LGDRIAII+ GKL C GSS+FLKN    GYYL+L  K
Sbjct:  1082 QGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKK 1135

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E1C2W8 E1C2W8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 805 (288.4 bits), Expect = 1.3e-78, P = 1.3e-78
 Identities = 151/234 (64%), Positives = 195/234 (83%)

Query:     1 MAIQNLSKRFPNGK-LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
             ++IQNL K + +GK +AV+GL +NFYE QITSFLGHNGAGKTTT+S+L G+ P +SGTA 
Sbjct:   902 VSIQNLVKVYRDGKKVAVDGLTLNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAF 961

Query:    60 IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
             I   DIR++++TIR++LGVCPQ+N LFD LTVEEH+WFY++LK +P+   + E+  M +D
Sbjct:   962 ILGKDIRSELSTIRQNLGVCPQHNVLFDLLTVEEHIWFYARLKGLPEKKVKEEMEQMAMD 1021

Query:   120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
             +G+PHK  +  + LSGGMQRKLSVA+AF+GGS+ VILDEPT+GVDPYSRR IWELL+KY+
Sbjct:  1022 VGLPHKLKARTSKLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYR 1081

Query:   180 KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMK 233
             +GRT+IL+TH+MDEAD+LGDRIAII+ GKL C GSS+FLKN    GYYL+L  K
Sbjct:  1082 QGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKK 1135

GO:0016887 "ATPase activity" evidence=IEA

GO:0002790 "peptide secretion" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005548 "phospholipid transporter activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006497 "protein lipidation" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IEA

GO:0007040 "lysosome organization" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0008509 "anion transmembrane transporter activity" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0016197 "endosomal transport" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=IEA

GO:0031267 "small GTPase binding" evidence=IEA

GO:0032367 "intracellular cholesterol transport" evidence=IEA

GO:0032489 "regulation of Cdc42 protein signal transduction" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IEA

GO:0033700 "phospholipid efflux" evidence=IEA

GO:0034186 "apolipoprotein A-I binding" evidence=IEA

GO:0034188 "apolipoprotein A-I receptor activity" evidence=IEA

GO:0034380 "high-density lipoprotein particle assembly" evidence=IEA

GO:0034616 "response to laminar fluid shear stress" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IEA

GO:0043691 "reverse cholesterol transport" evidence=IEA

GO:0045121 "membrane raft" evidence=IEA

GO:0045332 "phospholipid translocation" evidence=IEA

GO:0045335 "phagocytic vesicle" evidence=IEA

GO:0050702 "interleukin-1 beta secretion" evidence=IEA

GO:0055091 "phospholipid homeostasis" evidence=IEA

GO:0055098 "response to low-density lipoprotein particle stimulus" evidence=IEA

GO:0060155 "platelet dense granule organization" evidence=IEA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0071300 "cellular response to retinoic acid" evidence=IEA

UNIPROTKB|H0Y8C9 ABCA2 "ATP-binding cassette sub-family A member 2" [Homo sapiens (taxid:9606)]

 Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
 Identities = 143/237 (60%), Positives = 195/237 (82%)

Query:     1 MAIQNLSKRFPNGK-LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
             + +  L+K + + K LA+N L++N YE+Q+ SFLGHNGAGKTTT+S+L G+ P +SG+A 
Sbjct:   338 VCVDKLTKVYKDDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSAT 397

Query:    60 IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
             IY HDIRT+M  IR++LG+CPQ+N LFD+LTVEEH+WFYS+LK + ++  + E+  MI D
Sbjct:   398 IYGHDIRTEMDEIRKNLGMCPQHNVLFDRLTVEEHLWFYSRLKSMAQEEIRREMDKMIED 457

Query:   120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
             L + +KR SL  TLSGGM+RKLSVA+AF+GGSR +ILDEPT+GVDPY+RR+IW+L++KYK
Sbjct:   458 LELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILKYK 517

Query:   180 KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQ 236
              GRT++L+TH+MDEADLLGDRIAII+ GKL+CCGS +FLK ++  GY L+L  + A+
Sbjct:   518 PGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGTYGDGYRLTLVKRPAE 574

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1SP55 ABCA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 789 (282.8 bits), Expect = 1.2e-77, P = 1.2e-77
 Identities = 151/238 (63%), Positives = 194/238 (81%)

Query:     1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
             ++IQNL K + +G K+AV+GL +NFYE QITSFLGHNGAGKTTT+S+L G+ P +SGTA 
Sbjct:   902 VSIQNLMKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAY 961

Query:    60 IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
             I   DIR++M+TIR++LGVCPQ+N LFD LTVEEH+WFY++LK + +   + E+  M +D
Sbjct:   962 ILGKDIRSEMSTIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKHVKAEMEQMALD 1021

Query:   120 LGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY 178
             +G+P  K  S  + LSGGMQRKLSVA+AF+GGS+ VILDEPT+GVDPYSRR IWELL+KY
Sbjct:  1022 VGLPPSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKY 1081

Query:   179 KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQ 236
             ++GRT+IL+TH+MDEAD+LGDRIAII+ GKL C GSS+FLKN    GYYL+L  K  +
Sbjct:  1082 RQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVE 1139

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|G3N055 ABCA2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 790 (283.2 bits), Expect = 4.4e-77, P = 4.4e-77
 Identities = 144/237 (60%), Positives = 195/237 (82%)

Query:     1 MAIQNLSKRFPNGK-LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
             + +  L+K + N K LA+N L++N YE+Q+ SFLGHNGAGKTTT+S+L G+ P +SG+A 
Sbjct:   957 VCVDKLTKVYKNDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSAT 1016

Query:    60 IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
             IY HDIRT+M  IR++LG+CPQ+N LFD+LTVEEH+WFYS+LK + ++  + E+  MI D
Sbjct:  1017 IYGHDIRTEMDEIRKNLGMCPQHNVLFDRLTVEEHLWFYSRLKSMAQEEIRKEMDKMIED 1076

Query:   120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
             L + +KR SL  TLSGGM+RKLSVA+AF+GGSR +ILDEPT+GVDPY+RR+IW+L++KYK
Sbjct:  1077 LELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILKYK 1136

Query:   180 KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQ 236
              GRT++L+TH+MDEADLLGDRIAII+ GKL+CCGS +FLK ++  GY L+L  + A+
Sbjct:  1137 PGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGAYGDGYRLTLVKRPAE 1193

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|G3MWN6 ABCA2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 790 (283.2 bits), Expect = 4.4e-77, P = 4.4e-77
 Identities = 144/237 (60%), Positives = 195/237 (82%)

Query:     1 MAIQNLSKRFPNGK-LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
             + +  L+K + N K LA+N L++N YE+Q+ SFLGHNGAGKTTT+S+L G+ P +SG+A 
Sbjct:   960 VCVDKLTKVYKNDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSAT 1019

Query:    60 IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
             IY HDIRT+M  IR++LG+CPQ+N LFD+LTVEEH+WFYS+LK + ++  + E+  MI D
Sbjct:  1020 IYGHDIRTEMDEIRKNLGMCPQHNVLFDRLTVEEHLWFYSRLKSMAQEEIRKEMDKMIED 1079

Query:   120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
             L + +KR SL  TLSGGM+RKLSVA+AF+GGSR +ILDEPT+GVDPY+RR+IW+L++KYK
Sbjct:  1080 LELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILKYK 1139

Query:   180 KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQ 236
              GRT++L+TH+MDEADLLGDRIAII+ GKL+CCGS +FLK ++  GY L+L  + A+
Sbjct:  1140 PGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGAYGDGYRLTLVKRPAE 1196

GO:0048545 "response to steroid hormone stimulus" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IEA

GO:0032383 "regulation of intracellular cholesterol transport" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|H0Y8D6 ABCA2 "ATP-binding cassette sub-family A member 2" [Homo sapiens (taxid:9606)]

 Score = 785 (281.4 bits), Expect = 5.4e-77, P = 5.4e-77
 Identities = 143/237 (60%), Positives = 195/237 (82%)

Query:     1 MAIQNLSKRFPNGK-LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
             + +  L+K + + K LA+N L++N YE+Q+ SFLGHNGAGKTTT+S+L G+ P +SG+A 
Sbjct:   341 VCVDKLTKVYKDDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSAT 400

Query:    60 IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
             IY HDIRT+M  IR++LG+CPQ+N LFD+LTVEEH+WFYS+LK + ++  + E+  MI D
Sbjct:   401 IYGHDIRTEMDEIRKNLGMCPQHNVLFDRLTVEEHLWFYSRLKSMAQEEIRREMDKMIED 460

Query:   120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
             L + +KR SL  TLSGGM+RKLSVA+AF+GGSR +ILDEPT+GVDPY+RR+IW+L++KYK
Sbjct:   461 LELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILKYK 520

Query:   180 KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQ 236
              GRT++L+TH+MDEADLLGDRIAII+ GKL+CCGS +FLK ++  GY L+L  + A+
Sbjct:   521 PGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGTYGDGYRLTLVKRPAE 577

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1MG24 ABCA1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 789 (282.8 bits), Expect = 6.5e-77, P = 6.5e-77
 Identities = 151/238 (63%), Positives = 194/238 (81%)

Query:     1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
             ++IQNL K + +G K+AV+GL +NFYE QITSFLGHNGAGKTTT+S+L G+ P +SGTA 
Sbjct:   899 VSIQNLMKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAY 958

Query:    60 IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
             I   DIR++M+TIR++LGVCPQ+N LFD LTVEEH+WFY++LK + +   + E+  M +D
Sbjct:   959 ILGKDIRSEMSTIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKHVKAEMEQMALD 1018

Query:   120 LGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY 178
             +G+P  K  S  + LSGGMQRKLSVA+AF+GGS+ VILDEPT+GVDPYSRR IWELL+KY
Sbjct:  1019 VGLPPSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKY 1078

Query:   179 KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQ 236
             ++GRT+IL+TH+MDEAD+LGDRIAII+ GKL C GSS+FLKN    GYYL+L  K  +
Sbjct:  1079 RQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVE 1136

GO:0071300 "cellular response to retinoic acid" evidence=IEA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0060155 "platelet dense granule organization" evidence=IEA

GO:0055098 "response to low-density lipoprotein particle stimulus" evidence=IEA

GO:0055091 "phospholipid homeostasis" evidence=IEA

GO:0050702 "interleukin-1 beta secretion" evidence=IEA

GO:0045335 "phagocytic vesicle" evidence=IEA

GO:0045332 "phospholipid translocation" evidence=IEA

GO:0045121 "membrane raft" evidence=IEA

GO:0043691 "reverse cholesterol transport" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IEA

GO:0034616 "response to laminar fluid shear stress" evidence=IEA

GO:0034380 "high-density lipoprotein particle assembly" evidence=IEA

GO:0034188 "apolipoprotein A-I receptor activity" evidence=IEA

GO:0034186 "apolipoprotein A-I binding" evidence=IEA

GO:0033700 "phospholipid efflux" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IEA

GO:0032489 "regulation of Cdc42 protein signal transduction" evidence=IEA

GO:0032367 "intracellular cholesterol transport" evidence=IEA

GO:0031267 "small GTPase binding" evidence=IEA

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=IEA

GO:0016197 "endosomal transport" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0008509 "anion transmembrane transporter activity" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007040 "lysosome organization" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IEA

GO:0006497 "protein lipidation" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005548 "phospholipid transporter activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0002790 "peptide secretion" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

RGD|620238 Abca2 "ATP-binding cassette, subfamily A (ABC1), member 2" [Rattus norvegicus (taxid:10116)]

 Score = 789 (282.8 bits), Expect = 7.4e-77, P = 7.4e-77
 Identities = 144/237 (60%), Positives = 195/237 (82%)

Query:     1 MAIQNLSKRFPNGK-LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
             + +  L+K + N K LA+N L++N YE+Q+ SFLGHNGAGKTTT+S+L G+ P +SG+A 
Sbjct:   990 VCVDKLTKVYKNDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSAT 1049

Query:    60 IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
             IY HDIRT+M  IR++LG+CPQ+N LFD+LTVEEH+WFYS+LK + ++  + E+  MI D
Sbjct:  1050 IYGHDIRTEMDEIRKNLGMCPQHNVLFDQLTVEEHLWFYSRLKSMAQEEIRKEMDKMIED 1109

Query:   120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
             L + +KR SL  TLSGGM+RKLSVA+AF+GGSR +ILDEPT+GVDPY+RR+IW+L++KYK
Sbjct:  1110 LELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILKYK 1169

Query:   180 KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQ 236
              GRT++L+TH+MDEADLLGDRIAII+ GKL+CCGS +FLK ++  GY L+L  + A+
Sbjct:  1170 PGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGAYGDGYRLTLVKRPAE 1226

GO:0005524 "ATP binding" evidence=IEA;ISO;ISS;IDA

GO:0005764 "lysosome" evidence=ISO;ISS

GO:0005765 "lysosomal membrane" evidence=ISS

GO:0005768 "endosome" evidence=ISO;ISS

GO:0005815 "microtubule organizing center" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=ISO;ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO;ISS

GO:0006810 "transport" evidence=NAS

GO:0010008 "endosome membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO;ISS

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0016887 "ATPase activity" evidence=IEA;ISO;ISS

GO:0032383 "regulation of intracellular cholesterol transport" evidence=ISO;ISS

GO:0042632 "cholesterol homeostasis" evidence=ISO;ISS

GO:0048545 "response to steroid hormone stimulus" evidence=ISO;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9BZC7	ABCA2_HUMAN	No assigned EC number	0.6322	0.8605	0.0887	yes	N/A
Q84M24	AB1A_ARATH	No assigned EC number	0.5150	0.9163	0.1222	yes	N/A
Q9ESR9	ABCA2_RAT	No assigned EC number	0.6075	0.9402	0.0969	yes	N/A
P41234	ABCA2_MOUSE	No assigned EC number	0.6075	0.9402	0.0969	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	251
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	1e-113
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	1e-101
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	9e-79
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	2e-65
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	6e-64
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	1e-63
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	3e-49
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	1e-45
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	2e-44
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	2e-42
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	7e-42
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	2e-40
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	2e-40
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	3e-40
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	7e-39
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	1e-38
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	2e-38
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	8e-38
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	1e-36
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	2e-36
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	3e-36
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	4e-36
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	4e-36
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	4e-36
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	2e-35
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	2e-35
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	5e-35
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	2e-34
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	3e-34
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	1e-33
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	1e-33
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	8e-33
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	4e-32
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	5e-32
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	9e-32
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	1e-31
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	1e-31
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	3e-31
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	9e-31
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	1e-30
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	1e-30
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	2e-30
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	2e-30
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	3e-29
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	4e-29
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	4e-29
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	6e-29
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	7e-29
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	3e-28
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	6e-28
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	7e-28
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	9e-28
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	1e-27
COG4988	559	COG4988, CydD, ABC-type transport system involved	3e-27
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	5e-27
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	1e-26
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	2e-26
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	3e-26
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	3e-26
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	5e-26
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	9e-26
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	4e-25
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	4e-25
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	8e-25
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	4e-24
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	4e-24
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	6e-24
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	7e-24
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	1e-23
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	1e-23
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	2e-23
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	3e-23
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	3e-23
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	5e-23
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	1e-22
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	2e-22
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	2e-22
pfam00005	119	pfam00005, ABC_tran, ABC transporter	3e-22
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	3e-22
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	4e-22
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	4e-22
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	7e-22
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	7e-22
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	9e-22
COG1123	539	COG1123, COG1123, ATPase components of various ABC	1e-21
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	3e-21
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	3e-21
COG1123	539	COG1123, COG1123, ATPase components of various ABC	5e-21
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	6e-21
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	7e-21
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	8e-21
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	1e-20
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	2e-20
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	2e-20
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	2e-20
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	2e-20
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	3e-20
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	3e-20
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	3e-20
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	4e-20
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	7e-20
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	7e-20
COG4987	573	COG4987, CydC, ABC-type transport system involved	8e-20
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	1e-19
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	1e-19
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	1e-19
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	2e-19
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	2e-19
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	2e-19
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	3e-19
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	3e-19
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	4e-19
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	5e-19
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	6e-19
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	7e-19
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	8e-19
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	1e-18
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	2e-18
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	2e-18
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	3e-18
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	5e-18
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	7e-18
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	9e-18
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	9e-18
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	1e-17
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	1e-17
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	1e-17
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	1e-17
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	1e-17
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	1e-17
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	2e-17
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	2e-17
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	2e-17
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	2e-17
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	2e-17
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	2e-17
COG4133	209	COG4133, CcmA, ABC-type transport system involved	3e-17
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	3e-17
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	3e-17
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	3e-17
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	3e-17
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	4e-17
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	5e-17
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	6e-17
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	6e-17
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	7e-17
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	8e-17
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	8e-17
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	1e-16
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	1e-16
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	2e-16
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	2e-16
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	2e-16
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	2e-16
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	4e-16
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	4e-16
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	7e-16
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	7e-16
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	1e-15
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	1e-15
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	2e-15
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	2e-15
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	2e-15
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	2e-15
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	3e-15
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	3e-15
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	3e-15
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	3e-15
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	4e-15
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	4e-15
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	4e-15
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	4e-15
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	5e-15
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	5e-15
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	6e-15
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	7e-15
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	7e-15
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	1e-14
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	2e-14
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	2e-14
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	3e-14
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	5e-14
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	6e-14
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	7e-14
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	9e-14
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	9e-14
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	1e-13
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	1e-13
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	1e-13
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	1e-13
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	2e-13
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	2e-13
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	2e-13
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	3e-13
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	3e-13
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	3e-13
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	3e-13
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	4e-13
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	4e-13
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	4e-13
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	4e-13
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	4e-13
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	6e-13
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	6e-13
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	6e-13
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	8e-13
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	9e-13
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	1e-12
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	1e-12
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	1e-12
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	2e-12
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	2e-12
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	2e-12
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	3e-12
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	4e-12
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	5e-12
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	5e-12
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	6e-12
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	6e-12
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	6e-12
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	7e-12
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	1e-11
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	1e-11
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	2e-11
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	2e-11
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	2e-11
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	2e-11
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	3e-11
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	3e-11
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	4e-11
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	4e-11
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	7e-11
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	8e-11
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	8e-11
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	8e-11
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	1e-10
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	2e-10
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	3e-10
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	4e-10
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	5e-10
COG4598	256	COG4598, HisP, ABC-type histidine transport system	5e-10
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	5e-10
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	7e-10
PRK13540	200	PRK13540, PRK13540, cytochrome c biogenesis protei	8e-10
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	9e-10
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	9e-10
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	1e-09
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	1e-09
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	1e-09
TIGR01194	555	TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo	1e-09
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	1e-09
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	1e-09
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	1e-09
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	2e-09
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	2e-09
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	3e-09
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	4e-09
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	5e-09
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	5e-09
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	5e-09
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	5e-09
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	7e-09
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	7e-09
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	7e-09
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	8e-09
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	8e-09
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	9e-09
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	9e-09
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	1e-08
PRK09473	330	PRK09473, oppD, oligopeptide transporter ATP-bindi	1e-08
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	2e-08
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	2e-08
PRK10418	254	PRK10418, nikD, nickel transporter ATP-binding pro	2e-08
cd03227	162	cd03227, ABC_Class2, ATP-binding cassette domain o	2e-08
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	2e-08
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	2e-08
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	4e-08
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	8e-08
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	9e-08
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	1e-07
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	1e-07
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	1e-07
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	1e-07
PRK13541	195	PRK13541, PRK13541, cytochrome c biogenesis protei	1e-07
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	2e-07
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	2e-07
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	2e-07
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	2e-07
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	2e-07
PRK10522	547	PRK10522, PRK10522, multidrug transporter membrane	2e-07
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	2e-07
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	2e-07
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	3e-07
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	3e-07
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	3e-07
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	5e-07
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	5e-07
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	8e-07
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	9e-07
pfam13304	256	pfam13304, AAA_21, AAA domain	9e-07
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	1e-06
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	1e-06
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	1e-06
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	2e-06
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	3e-06
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	3e-06
PRK00635	1809	PRK00635, PRK00635, excinuclease ABC subunit A; Pr	3e-06
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	4e-06
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	4e-06
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	5e-06
cd03289	275	cd03289, ABCC_CFTR2, ATP-binding cassette domain 2	7e-06
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	7e-06
COG5265	497	COG5265, ATM1, ABC-type transport system involved	8e-06
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	9e-06
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	1e-05
PRK11022	326	PRK11022, dppD, dipeptide transporter ATP-binding	1e-05
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	1e-05
cd03240	204	cd03240, ABC_Rad50, ATP-binding cassette domain of	1e-05
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	2e-05
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	2e-05
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	2e-05
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	2e-05
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	3e-05
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	3e-05
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	3e-05
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	4e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	5e-05
COG4170	330	COG4170, SapD, ABC-type antimicrobial peptide tran	5e-05
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	9e-05
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	1e-04
PRK15079	331	PRK15079, PRK15079, oligopeptide ABC transporter A	1e-04
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	1e-04
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	3e-04
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	4e-04
COG0178	935	COG0178, UvrA, Excinuclease ATPase subunit [DNA re	4e-04
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	5e-04
smart00382	148	smart00382, AAA, ATPases associated with a variety	5e-04
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	6e-04
cd03271	261	cd03271, ABC_UvrA_II, ATP-binding cassette domain	8e-04
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	8e-04
cd03270	226	cd03270, ABC_UvrA_I, ATP-binding cassette domain I	9e-04
PRK15093	330	PRK15093, PRK15093, antimicrobial peptide ABC tran	0.001
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	0.001
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	0.001
PRK13546	264	PRK13546, PRK13546, teichoic acids export protein	0.001
PRK11650	356	PRK11650, ugpC, glycerol-3-phosphate transporter A	0.002
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	0.002
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	0.003
CHL00131	252	CHL00131, ycf16, sulfate ABC transporter protein;	0.003
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	0.004

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score =  323 bits (830), Expect = e-113
 Identities = 119/218 (54%), Positives = 161/218 (73%), Gaps = 1/218 (0%)

Query: 3   IQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           I+NL+K +  G K AV+ L++N Y+ +I   LGHNGAGKTTT+ ML G L  +SGTA I 
Sbjct: 3   IRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYIN 62

Query: 62  NHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG 121
            + IRTD    R+SLG CPQ++ALFD+LTV EH+ FY++LK +PK   + E+  ++  LG
Sbjct: 63  GYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLG 122

Query: 122 IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKG 181
           +  K    A TLSGGM+RKLS+A+A IGG   ++LDEPTSG+DP SRR+IW+L+++ +KG
Sbjct: 123 LTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKG 182

Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219
           R++ILTTH MDEA+ L DRIAI++ GKL+C GS   LK
Sbjct: 183 RSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score =  321 bits (825), Expect = e-101
 Identities = 144/247 (58%), Positives = 192/247 (77%), Gaps = 1/247 (0%)

Query: 1    MAIQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
            + ++NL K F P+G+ AV+ LN+ FYE+QIT+FLGHNGAGKTTT+S+L G+LP +SGT  
Sbjct: 929  VCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVL 988

Query: 60   IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
            +   DI T++  +R+SLG+CPQ+N LF  LTV EH+ FY+QLK    + AQLE+  M+ D
Sbjct: 989  VGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLED 1048

Query: 120  LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
             G+ HKR   A  LSGGMQRKLSVA+AF+G ++ V+LDEPTSGVDPYSRRSIW+LL+KY+
Sbjct: 1049 TGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR 1108

Query: 180  KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQLQA 239
             GRT+I++TH+MDEADLLGDRIAII+ G+L C G+ +FLKN F  G+YL+L  K   +Q+
Sbjct: 1109 SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVRKMKNIQS 1168

Query: 240  EDIGLDG 246
            +  G +G
Sbjct: 1169 QRGGCEG 1175

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score =  238 bits (610), Expect = 9e-79
 Identities = 86/231 (37%), Positives = 141/231 (61%), Gaps = 2/231 (0%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           ++NL+K++   K A++G++      +I   LG NGAGKTT + +L G+L  +SG   +  
Sbjct: 7   VRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLG 66

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
           +D+  +   +RR +G  PQ  +L+ +LTV E++ F+++L  + K+ A+  I  ++   G+
Sbjct: 67  YDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGL 126

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-- 180
             K      TLSGGM+++LS+A+A +     +ILDEPTSG+DP SRR IWELL +  K  
Sbjct: 127 EDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEG 186

Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLD 231
           G T++L+TH ++EA+ L DR+ I+  GK+   G+   LK  F     + L+
Sbjct: 187 GVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELE 237

Length = 293

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score =  200 bits (512), Expect = 2e-65
 Identities = 71/208 (34%), Positives = 118/208 (56%), Gaps = 38/208 (18%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           ++NLSKR+     A++ +++   + +I   LG NGAGKTT I +++G+L   SG  K+  
Sbjct: 3   VRNLSKRYGKKT-ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLG 61

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
            DI+ +   ++R +G  P+  +L++ LTV E++                           
Sbjct: 62  KDIKKEPEEVKRRIGYLPEEPSLYENLTVRENL--------------------------- 94

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-G 181
                     LSGGM+++L++A A +     +ILDEPTSG+DP SRR  WELL + KK G
Sbjct: 95  ---------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEG 145

Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGKL 209
           +T++L++H ++EA+ L DR+AI+  G++
Sbjct: 146 KTILLSSHILEEAERLCDRVAILNNGRI 173

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score =  198 bits (506), Expect = 6e-64
 Identities = 81/219 (36%), Positives = 129/219 (58%), Gaps = 3/219 (1%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           ++NL K++     AV G++      +I   LG NGAGKTTTI ML  +L  +SG A +  
Sbjct: 3   VENLVKKY-GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAG 61

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
           HD+  +   +RR +G+  Q  ++ D+LT  E+++ +++L  VP    +  I  ++  +G+
Sbjct: 62  HDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGL 121

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-- 180
                 L  T SGGM+R+L +A + +     + LDEPT G+DP +R  +WE + K K+  
Sbjct: 122 LEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEF 181

Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219
           G T++LTTHYM+EA+ L DR+AII  G++   G+   LK
Sbjct: 182 GMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score =  200 bits (511), Expect = 1e-63
 Identities = 94/260 (36%), Positives = 141/260 (54%), Gaps = 18/260 (6%)

Query: 8   KRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT 67
           K +     AV+G+N    E ++  FLG NGAGKTTTI ML  +L  +SGTA++  +D+  
Sbjct: 1   KVY-GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR 59

Query: 68  DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRT 127
           +   +RRS+G+ PQY ++ + LT  E++    +L  +PKD A+     ++    +     
Sbjct: 60  EPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAAD 119

Query: 128 SLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-GRTVIL 186
               T SGGM+R+L +A + I     + LDEPT+G+DP +RR+IW+ +   K+ G T++L
Sbjct: 120 RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILL 179

Query: 187 TTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS-------FARGYYLSLD----MKSA 235
           TTHYM+EAD L DRIAII  G++   G+   LK                SL     M  A
Sbjct: 180 TTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLESRPRDIQSLKVEVSMLIA 239

Query: 236 -----QLQAEDIGLDGDRIR 250
                 L    + +D DRI+
Sbjct: 240 ELGETGLGLLAVTVDSDRIK 259

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score =  173 bits (439), Expect = 3e-49
 Identities = 91/238 (38%), Positives = 142/238 (59%), Gaps = 2/238 (0%)

Query: 1    MAIQNLSKRFP-NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
            + +  L+K +      AV+ L V     +    LG NGAGKTTT  ML G   V+SG A 
Sbjct: 1938 LRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDAT 1997

Query: 60   IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
            +    I T+++ + +++G CPQ++A+ D LT  EH++ Y++L+ VP +  +   +  I  
Sbjct: 1998 VAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQS 2057

Query: 120  LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK-Y 178
            LG+      LA T SGG +RKLS A+A IG    V+LDEPT+G+DP +RR +W  ++   
Sbjct: 2058 LGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSII 2117

Query: 179  KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQ 236
            ++GR V+LT+H M+E + L  R+AI+  G  QC G+   LK+ F  GY +++ +KS +
Sbjct: 2118 REGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTMKIKSPK 2175

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score =  151 bits (384), Expect = 1e-45
 Identities = 66/211 (31%), Positives = 119/211 (56%), Gaps = 2/211 (0%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           ++NL+KR+   + A++G+++      +   LG NGAGKTT + +L  + P SSGT +I  
Sbjct: 3   LENLTKRYGKKR-ALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDG 60

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
            D+      +RR +G  PQ   ++   TV E + + + LK +P    +  +  ++  + +
Sbjct: 61  QDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNL 120

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGR 182
             +      +LSGGM+R++ +A A +G    +I+DEPT+G+DP  R     LL +  + R
Sbjct: 121 GDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDR 180

Query: 183 TVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213
            VIL+TH +++ + L +++A++  GKL   G
Sbjct: 181 IVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score =  150 bits (382), Expect = 2e-44
 Identities = 67/223 (30%), Positives = 118/223 (52%), Gaps = 5/223 (2%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           I+ ++K F + K AV+ ++      +I   LG NGAGKTTT  M++G+L  + G      
Sbjct: 5   IEGVTKSFGD-KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNG 63

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
             +      I+  +G  P+   L+ K+TVE+ + + ++LK +PK   Q ++   +  L I
Sbjct: 64  GPLSQ---EIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEI 120

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KG 181
             K+T     LS G Q+K+    A I     +ILDEP SG+DP +   + + + + K +G
Sbjct: 121 VGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG 180

Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFAR 224
            T+I ++H M+  + L DR+ ++  G+    G+   ++ SF +
Sbjct: 181 ATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGK 223

Length = 300

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score =  145 bits (369), Expect = 2e-42
 Identities = 67/217 (30%), Positives = 114/217 (52%), Gaps = 6/217 (2%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
            +N+SKR+   K AV+ +N+   E +    +G +G+GKTTT+ M+  ++  +SG   I  
Sbjct: 4   FENVSKRY-GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDG 62

Query: 63  HDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI--VD 119
            DI   D   +RR +G   Q   LF  LTV E++    +L    K+  +     ++  V 
Sbjct: 63  EDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVG 122

Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
           L          + LSGG Q+++ VA A       +++DEP   +DP +R+ + E + + +
Sbjct: 123 LDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQ 182

Query: 180 K--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           K  G+T++  TH +DEA  L DRIA++ AG++    +
Sbjct: 183 KELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDT 219

Length = 309

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score =  142 bits (361), Expect = 7e-42
 Identities = 64/213 (30%), Positives = 114/213 (53%), Gaps = 1/213 (0%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           + +L+K + +   AV  ++    E +IT  LG NGAGKTT + M+  +L   SG   I  
Sbjct: 4   VTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDG 63

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
            D   D + +RR +GV      L+ +LT  E++ ++++L  + +   +  I+ +   L +
Sbjct: 64  VDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQL 123

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KG 181
                      S GM++K+++A A +     ++LDEPTSG+D  +RR   + + + K +G
Sbjct: 124 LEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG 183

Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           R VI ++H M E + L DR+ ++  G++   GS
Sbjct: 184 RAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGS 216

Length = 245

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score =  138 bits (349), Expect = 2e-40
 Identities = 62/207 (29%), Positives = 109/207 (52%), Gaps = 5/207 (2%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           ++N++KRF     A++ ++ +  + +I   LG NGAGKTTTI M++G++   SG      
Sbjct: 3   VENVTKRFGR-VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG 61

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
             +       R  +G  P+   L+ K+ V + + + +QLK + K+ A+  I   +  L +
Sbjct: 62  KPLDIA---ARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLEL 118

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KG 181
                     LS G Q+K+    A I     +ILDEP SG+DP +   + +++ +    G
Sbjct: 119 SEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAG 178

Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGK 208
           +TVIL+TH M+  + L DR+ ++  G+
Sbjct: 179 KTVILSTHQMELVEELCDRVLLLNKGR 205

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score =  136 bits (344), Expect = 2e-40
 Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 54/208 (25%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           I+NLS R+     A++ +++     +I + +G NG+GK+T +  + G+L  +SG   I  
Sbjct: 2   IENLSFRYGGRT-ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60

Query: 63  HDI-RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG 121
            DI +  +  +RR +G  PQ                                        
Sbjct: 61  KDIAKLPLEELRRRIGYVPQ---------------------------------------- 80

Query: 122 IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KK 180
                      LSGG ++++++A A +     ++LDEPTSG+DP SR  + ELL +  ++
Sbjct: 81  -----------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE 129

Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGK 208
           GRTVI+ TH  + A+L  DR+ ++  GK
Sbjct: 130 GRTVIIVTHDPELAELAADRVIVLKDGK 157

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score =  137 bits (348), Expect = 3e-40
 Identities = 58/208 (27%), Positives = 109/208 (52%), Gaps = 7/208 (3%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
             +L+K +   K  ++ ++++  + +I  FLG NGAGKTTT+ +++G++   SG     +
Sbjct: 3   TNDLTKTY-GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITF-D 60

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
                      R +G   +    +  LT  E++   ++L  + K     E+ +++     
Sbjct: 61  GKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRID-EVLDVVGLKDS 119

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-G 181
             K+       S GM+++L +A+A +G    +ILDEPT+G+DP   + + EL++  +  G
Sbjct: 120 AKKKVK---GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQG 176

Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGKL 209
            TV++++H + E   + DRI II  GKL
Sbjct: 177 ITVLISSHLLSEIQKVADRIGIINKGKL 204

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score =  135 bits (341), Expect = 7e-39
 Identities = 70/217 (32%), Positives = 117/217 (53%), Gaps = 5/217 (2%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
            +N++KR+  GK AVN LN+   + +    +G +G+GKTTT+ M+  ++  +SG   I  
Sbjct: 3   FENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDG 62

Query: 63  HDIR-TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI--VD 119
            DIR  D   +RR +G   Q   LF  +TVEE++    +L + PK+  +     ++  V 
Sbjct: 63  EDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVG 122

Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
           L          + LSGG Q+++ VA A       +++DEP   +DP +R  + E   + +
Sbjct: 123 LDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQ 182

Query: 180 K--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           +  G+T++  TH +DEA  L DRIAI+  G++   G+
Sbjct: 183 QELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGT 219

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score =  133 bits (337), Expect = 1e-38
 Identities = 63/210 (30%), Positives = 117/210 (55%), Gaps = 4/210 (1%)

Query: 3   IQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           ++NLS  +P+G + A++ +++   + +    +G NG+GK+T + +L G+L  +SG   + 
Sbjct: 2   LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVD 61

Query: 62  NHDIR-TDMTTIRRSLGVCPQY-NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
             D+    +  +RR +G+  Q  +  F   TVEE + F  +   +P++  +  +   +  
Sbjct: 62  GKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALEL 121

Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
           +G+   R     TLSGG ++++++A         ++LDEPT+G+DP  RR + ELL K K
Sbjct: 122 VGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLK 181

Query: 180 K-GRTVILTTHYMDEADLLGDRIAIIAAGK 208
             G+T+I+ TH +D    L DR+ ++  GK
Sbjct: 182 AEGKTIIIVTHDLDLLLELADRVIVLEDGK 211

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score =  133 bits (336), Expect = 2e-38
 Identities = 65/213 (30%), Positives = 112/213 (52%), Gaps = 4/213 (1%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           ++ LSK +     A++ L++     +  + LG +G GKTT + ++ G+    SG   I  
Sbjct: 3   LKGLSKTY-GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDG 61

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
            D+ T +   RR++G+  Q  ALF  LTV E++ F  +L+ VPK   +  +  ++  +G+
Sbjct: 62  RDV-TGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGL 120

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-- 180
                   + LSGG Q+++++A A       ++LDEP S +D   R  + E L + ++  
Sbjct: 121 EGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQREL 180

Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213
           G T I  TH  +EA  L DRIA++  G++   G
Sbjct: 181 GITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score =  131 bits (332), Expect = 8e-38
 Identities = 63/211 (29%), Positives = 113/211 (53%), Gaps = 4/211 (1%)

Query: 3   IQNLSKRFPNGK---LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
              L+KRF + K    AV+G++      ++T  LG NGAGKTTT+ ML G+L   +G A 
Sbjct: 4   ADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT 63

Query: 60  IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
           +   D+  +    RR LG       L+D+LT  E++ +++ L  +  D     +  +   
Sbjct: 64  VDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADR 123

Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
           LG+           S GM++K+++A A +     ++LDEPT+G+D  + R++ E + + +
Sbjct: 124 LGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLR 183

Query: 180 K-GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
             G+ ++ +TH M E + L DR+ ++  G++
Sbjct: 184 ALGKCILFSTHIMQEVERLCDRVVVLHRGRV 214

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score =  131 bits (330), Expect = 1e-36
 Identities = 68/207 (32%), Positives = 121/207 (58%), Gaps = 2/207 (0%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
            +N+ KR+ + KL V+GL+ +    +    LG NGAGKTTT+ ML+G+    +G+  +  
Sbjct: 10  FRNVEKRYGD-KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCG 68

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
             + +     R+ +GV PQ++ L    TV E++  + +   +    A+  +  ++    +
Sbjct: 69  EPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKL 128

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK-YKKG 181
            +K  +    LSGGM+R+L++A A +     ++LDEPT+G+DP +R  +WE L     +G
Sbjct: 129 ENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARG 188

Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGK 208
           +T++LTTH+M+EA+ L DR+ +I  G+
Sbjct: 189 KTILLTTHFMEEAERLCDRLCVIEEGR 215

Length = 306

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score =  130 bits (328), Expect = 2e-36
 Identities = 73/215 (33%), Positives = 121/215 (56%), Gaps = 12/215 (5%)

Query: 1   MAIQ--NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA 58
           +AI    +SK +   K+ VN L+      +    LG NGAGK+T   ML+GM+    G  
Sbjct: 3   VAIDLVGVSKSY-GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61

Query: 59  KIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIV 118
            +    + +     R ++GV PQ++ L  + TV E++  + +       ++  EI  +I 
Sbjct: 62  TVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG----MSTREIEAVIP 117

Query: 119 DLGIPHKRTSLANT----LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
            L    +  S A+     LSGGM+R+L++A A I   + +ILDEPT+G+DP++R  IWE 
Sbjct: 118 SLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER 177

Query: 175 LIK-YKKGRTVILTTHYMDEADLLGDRIAIIAAGK 208
           L     +G+T++LTTH+M+EA+ L DR+ ++ +G+
Sbjct: 178 LRSLLARGKTILLTTHFMEEAERLCDRLCVLESGR 212

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score =  128 bits (323), Expect = 3e-36
 Identities = 76/234 (32%), Positives = 127/234 (54%), Gaps = 11/234 (4%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
            +NL+K +   +  VN +++     +I   LG NGAGKTTT  M++G++   SG   + +
Sbjct: 7   AENLAKSY-KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDD 65

Query: 63  HDIRTDMTTIRRS---LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQ--LEISNMI 117
            DI T +   +R+   +G  PQ  ++F KLTVE+++    ++++     A+   E+  ++
Sbjct: 66  EDI-TKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALL 124

Query: 118 VDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK 177
            +  I H R S A +LSGG +R++ +A A     + ++LDEP +GVDP +   I   +IK
Sbjct: 125 EEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQR-IIK 183

Query: 178 YKKGRT--VILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV-FLKNSFARGYYL 228
           + K R   V++T H + E   + DR  II+ GK+   GS    + N   R  YL
Sbjct: 184 HLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDVRRVYL 237

Length = 243

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  127 bits (322), Expect = 4e-36
 Identities = 61/218 (27%), Positives = 117/218 (53%), Gaps = 7/218 (3%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
            +NLS R+P  K A+  +++   + +    +G NG+GK+T + +L G+L  +SG   +  
Sbjct: 6   AENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDG 65

Query: 63  HDIRT--DMTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIV 118
            D  +   +  +R+ +G+  Q   + LF   TVE+ + F  +   +P++  +  ++  + 
Sbjct: 66  LDTSSEKSLLELRQKVGLVFQNPDDQLFG-PTVEDEVAFGLENLGLPREEIEERVAEALE 124

Query: 119 DLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY 178
            +G+          LSGG ++++++A     G   ++LDEPT+G+DP  RR + ELL K 
Sbjct: 125 LVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKL 184

Query: 179 KK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           K+  G+T+I+ TH ++      DR+ ++  GK+   G 
Sbjct: 185 KEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGD 222

Length = 235

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score =  127 bits (322), Expect = 4e-36
 Identities = 77/231 (33%), Positives = 131/231 (56%), Gaps = 7/231 (3%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
            +NLSKR+   +  VNG++++  + +I   LG NGAGKTTT  M++G++   SG   +  
Sbjct: 3   AENLSKRY-GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDG 61

Query: 63  HDIRTDMTTIRRS-LGVC--PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
            DI T +   +R+ LG+   PQ  ++F KLTVEE++    +++ + K   + ++  ++ +
Sbjct: 62  QDI-TKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEE 120

Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
             I H R S A++LSGG +R++ +A A     + ++LDEP +GVDP + + I +++   K
Sbjct: 121 FHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILK 180

Query: 180 -KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV-FLKNSFARGYYL 228
            +G  V++T H + E   + DR  II  GK+   G+      N   R  YL
Sbjct: 181 DRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANELVRKVYL 231

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score =  130 bits (328), Expect = 4e-36
 Identities = 70/211 (33%), Positives = 118/211 (55%), Gaps = 4/211 (1%)

Query: 1   MAIQ--NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA 58
           +AI    +SK +   K  VNGL+      +    LG NGAGK+T   M++GM    +G  
Sbjct: 40  VAIDLAGVSKSY-GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98

Query: 59  KIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIV 118
            +    +       R  +GV PQ++ L  + TV E++  + +   +     +  I +++ 
Sbjct: 99  TVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLE 158

Query: 119 DLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK- 177
              +  K  +  + LSGGM+R+L++A A I   + +ILDEPT+G+DP++R  IWE L   
Sbjct: 159 FARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSL 218

Query: 178 YKKGRTVILTTHYMDEADLLGDRIAIIAAGK 208
             +G+T++LTTH+M+EA+ L DR+ ++ AG+
Sbjct: 219 LARGKTILLTTHFMEEAERLCDRLCVLEAGR 249

Length = 340

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score =  127 bits (322), Expect = 2e-35
 Identities = 62/207 (29%), Positives = 118/207 (57%), Gaps = 1/207 (0%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           + +L+K +     A++ ++    + +I  FLG NGAGK+TT+ ++ G LP  SG+ ++  
Sbjct: 5   VSSLTKLYGTQN-ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCG 63

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
            D+  +   ++R++G  P++N L+  + V E++ F + +  +   L +  +  MI  +G+
Sbjct: 64  EDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGL 123

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGR 182
             ++      LS G ++++ +A A I   + +ILDEPT+G+DP     I  ++    K +
Sbjct: 124 RPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDK 183

Query: 183 TVILTTHYMDEADLLGDRIAIIAAGKL 209
           T+IL+TH M E + + DR+ II  GK+
Sbjct: 184 TIILSTHIMQEVEAICDRVIIINKGKI 210

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score =  126 bits (319), Expect = 2e-35
 Identities = 57/220 (25%), Positives = 109/220 (49%), Gaps = 16/220 (7%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           + ++NLS  +  GK  ++ L+ +  + +IT  LG NG+GK+T +  L G+L   SG   +
Sbjct: 3   LEVENLSFGY-GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLL 61

Query: 61  YNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEE--------HMWFYSQLKQVPKDLAQL 111
              DI +     + + L   PQ  +    LTV E        H+  + +  +  +++ + 
Sbjct: 62  DGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEE 121

Query: 112 EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI 171
            +  +    G+ H      + LSGG ++++ +A A    +  ++LDEPTS +D   +  +
Sbjct: 122 ALELL----GLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEV 177

Query: 172 WELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
            ELL  +  +KG TV++  H ++ A    D + ++  GK+
Sbjct: 178 LELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKI 217

Length = 258

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score =  124 bits (313), Expect = 5e-35
 Identities = 71/209 (33%), Positives = 116/209 (55%), Gaps = 11/209 (5%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
            +NLSKRF   + AVN +++   ++ +   LG NGAGK+T + M+ G+L  +SG      
Sbjct: 3   TKNLSKRFGK-QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG 61

Query: 63  HD-IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG 121
           H   R D+      +G   +   L++ LT  E++  ++ L  +P      E+ N IVDL 
Sbjct: 62  HPWTRKDL----HKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRID-EVLN-IVDLT 115

Query: 122 IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KK 180
              K+   A   S GM+++L +A+A +   + +ILDEPT+G+DP   + + EL+  + ++
Sbjct: 116 NTGKKK--AKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ 173

Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           G TVIL++H + E   L D I II+ G L
Sbjct: 174 GITVILSSHILSEVQQLADHIGIISEGVL 202

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score =  122 bits (310), Expect = 2e-34
 Identities = 70/229 (30%), Positives = 123/229 (53%), Gaps = 14/229 (6%)

Query: 3   IQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           ++ L+K F  G   V  G++++    +I + +G +G+GK+T + +++G+L   SG   I 
Sbjct: 3   LRGLTKSF--GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLID 60

Query: 62  NHDI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL--EISN 115
             DI      ++  +RR +G+  Q  ALFD LTV E++ F   L++  +   +   EI  
Sbjct: 61  GEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFP--LREHTRLSEEEIREIVL 118

Query: 116 MIVDL-GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
             ++  G+          LSGGM++++++A A       ++ DEPT+G+DP +   I +L
Sbjct: 119 EKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDL 178

Query: 175 LIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221
           +   KK  G T I+ TH +D A  + DRIA++  GK+   G+   L+ S
Sbjct: 179 IRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score =  125 bits (316), Expect = 3e-34
 Identities = 65/222 (29%), Positives = 115/222 (51%), Gaps = 13/222 (5%)

Query: 1   MA---IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
           MA   ++N+ K F + +  +  +N++  + +    LG +G GK+T + M+ G+   +SG 
Sbjct: 1   MAELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59

Query: 58  AKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK---DLAQLEIS 114
             I   D+ TD+   +R + +  Q  AL+  +TV E++ F  +L+ VPK   D    E++
Sbjct: 60  ILIDGRDV-TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118

Query: 115 NMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
            +   LG+ H        LSGG ++++++A A +   +  +LDEP S +D   R  +   
Sbjct: 119 KL---LGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSE 175

Query: 175 LIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           + K  +  G T I  TH   EA  L DRI ++  G++Q  G+
Sbjct: 176 IKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGT 217

Length = 338

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score =  120 bits (304), Expect = 1e-33
 Identities = 57/218 (26%), Positives = 111/218 (50%), Gaps = 11/218 (5%)

Query: 2   AIQNLSKRFPNGKL---AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA 58
            ++NLSK +  G     A+ G++++  + +  + +G +G+GK+T +++L G+   +SG  
Sbjct: 2   ELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEV 61

Query: 59  KIYNHDI----RTDMTTIRR-SLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEI 113
           ++   DI      ++   RR  +G   Q   L   LT  E++     L  VPK   +   
Sbjct: 62  RVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERA 121

Query: 114 SNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
             ++  +G+  +     + LSGG Q+++++A A     + ++ DEPT  +D  + + + E
Sbjct: 122 EELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVME 181

Query: 174 LLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           LL +  K  G T+++ TH  + A+   DRI  +  GK+
Sbjct: 182 LLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  121 bits (307), Expect = 1e-33
 Identities = 70/224 (31%), Positives = 125/224 (55%), Gaps = 17/224 (7%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           ++ ++K F   ++ ++G++++    +I + LG +G+GK+T + +++G+L    G   I  
Sbjct: 11  VRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDG 69

Query: 63  HDI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWF-YSQLKQVPKDLAQLEISNMI 117
            DI      ++  IR+ +GV  Q  ALF  LTV E++ F   +  ++P+ L + E+  M 
Sbjct: 70  EDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIR-ELVLMK 128

Query: 118 VDL-GIP----HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW 172
           ++L G+         S    LSGGM++++++A A       + LDEPTSG+DP S   I 
Sbjct: 129 LELVGLRGAAADLYPS---ELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVID 185

Query: 173 ELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           EL+ +     G TVI+ TH +D    + DR+A++A GK+   G+
Sbjct: 186 ELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGT 229

Length = 263

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score =  118 bits (298), Expect = 8e-33
 Identities = 58/211 (27%), Positives = 112/211 (53%), Gaps = 9/211 (4%)

Query: 1   MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
           + ++N+SK +  G     A+  ++++  E +  + +G +G GK+T + ++ G+   +SG 
Sbjct: 1   LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60

Query: 58  AKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI 117
             +        +T      G   Q +AL   LTV +++    +L+ VPK  A+     ++
Sbjct: 61  VLVDG----EPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELL 116

Query: 118 VDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL-- 175
             +G+     +  + LSGGM++++++A A       ++LDEP S +D  +R  + E L  
Sbjct: 117 ELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLD 176

Query: 176 IKYKKGRTVILTTHYMDEADLLGDRIAIIAA 206
           I  + G+TV+L TH +DEA  L DR+ +++A
Sbjct: 177 IWRETGKTVLLVTHDIDEAVFLADRVVVLSA 207

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score =  116 bits (294), Expect = 4e-32
 Identities = 54/221 (24%), Positives = 113/221 (51%), Gaps = 14/221 (6%)

Query: 3   IQNLSKRFPNGKL---AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           ++NLS  FP G     A++ ++ +  + +    +G +G+GK+T    ++G+L  +SG+  
Sbjct: 4   VKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSII 63

Query: 60  IYNHDI----RTDMTTIRRSLGVCPQ--YNALFDKLTVEEHMW--FYSQLKQVPKDLAQL 111
               D+    R      R+ + +  Q   ++L  ++T+ E +        K   K+  + 
Sbjct: 64  FDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKE 123

Query: 112 EISNMIVDLGIPHKR-TSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
            +  ++V +G+P +      + LSGG ++++++A A     + +I DEPTS +D   +  
Sbjct: 124 AVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQ 183

Query: 171 IWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           I +LL  ++ + G T++  TH +     + DR+A++ AGK+
Sbjct: 184 ILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score =  116 bits (294), Expect = 5e-32
 Identities = 61/222 (27%), Positives = 106/222 (47%), Gaps = 16/222 (7%)

Query: 2   AIQNLSKRFPNGKL-AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
            ++ L+KRF  G L A++ ++ +    +I   +G NGAGKTT  +++ G L  +SG+   
Sbjct: 2   EVRGLTKRF--GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLF 59

Query: 61  YNHDIRTDMTTIRRSLGVCP--QYNALFDKLTVEE------HMW---FYSQLKQVPKDLA 109
              DI          LG+    Q   LF +LTV E                 +   ++  
Sbjct: 60  DGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREERE 119

Query: 110 QLEISNMIVD-LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR 168
             E +  +++ +G+       A  LS G QR+L +A A     + ++LDEP +G++P   
Sbjct: 120 ARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEET 179

Query: 169 RSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
             + EL+ + + +G TV+L  H MD    L DR+ ++  G++
Sbjct: 180 EELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRV 221

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score =  114 bits (288), Expect = 9e-32
 Identities = 65/211 (30%), Positives = 107/211 (50%), Gaps = 40/211 (18%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           ++N+SKR+   K  +N +++N    +I + LG +G+GK+T +  + G+    SG+  I  
Sbjct: 3   LKNVSKRY-GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDG 61

Query: 63  HDI---RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
            D+     ++  +RR +G+  Q  ALF  LTV E                        + 
Sbjct: 62  EDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLE-----------------------NIA 98

Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IK 177
           LG           LSGG Q+++++A A       ++LDEPTS +DP +RR +  LL  ++
Sbjct: 99  LG-----------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQ 147

Query: 178 YKKGRTVILTTHYMDEADLLGDRIAIIAAGK 208
            + G TV+L TH +DEA  L DR+ ++  GK
Sbjct: 148 AQLGITVVLVTHDLDEAARLADRVVVLRDGK 178

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score =  116 bits (292), Expect = 1e-31
 Identities = 65/209 (31%), Positives = 111/209 (53%), Gaps = 5/209 (2%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           ++NLSK +   KL    L V   +  +   LG  G+GK+  +  + G +   SG   +  
Sbjct: 3   VENLSKDWKEFKLKNVSLEVERGDYFV--ILGPTGSGKSVLLETIAGFIKPDSGKILLNG 60

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
            DI T++   +R +   PQ  ALF  +TV +++ +  + ++V K   + ++  +   LGI
Sbjct: 61  KDI-TNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGI 119

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-- 180
            H       TLSGG Q+++++A A +   + ++LDEP S +D  ++  + E L K +K  
Sbjct: 120 DHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEF 179

Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           G TV+  TH  +EA  L D++AI+  GKL
Sbjct: 180 GVTVLHVTHDFEEAWALADKVAIMLNGKL 208

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score =  114 bits (287), Expect = 1e-31
 Identities = 54/215 (25%), Positives = 95/215 (44%), Gaps = 38/215 (17%)

Query: 2   AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
            ++NLS  +  G+  ++ L+++    +I   LG NGAGK+T +  L G+L  SSG   + 
Sbjct: 1   EVENLSVGY-GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLD 59

Query: 62  NHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
             D+ +     + R +   PQ   L                                  L
Sbjct: 60  GKDLASLSPKELARKIAYVPQALEL----------------------------------L 85

Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
           G+ H      N LSGG ++++ +A A       ++LDEPTS +D   +  + ELL +  +
Sbjct: 86  GLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR 145

Query: 181 --GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213
             G+TV++  H ++ A    DR+ ++  G++   G
Sbjct: 146 ERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score =  114 bits (287), Expect = 3e-31
 Identities = 62/211 (29%), Positives = 108/211 (51%), Gaps = 5/211 (2%)

Query: 4   QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
            N++K +PNG  A++G+N++    +    +G +GAGK+T + ++      +SGT ++   
Sbjct: 4   INVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQ 63

Query: 64  DI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
           D+       +  +RR +GV  Q   L     V E++ F  ++  VP    +  +   +  
Sbjct: 64  DVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALEL 123

Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY- 178
           +G+ HK  +L   LSGG Q+++++A A +     +I DEPT  +DP +   I  LL K  
Sbjct: 124 VGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKIN 183

Query: 179 KKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           K G TV++ TH  +  D    R+  +  GKL
Sbjct: 184 KAGTTVVVATHAKELVDTTRHRVIALERGKL 214

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  114 bits (287), Expect = 9e-31
 Identities = 51/207 (24%), Positives = 105/207 (50%), Gaps = 7/207 (3%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           I+ +SK F   +  +  +N++  + +  + LG +G GK+T + ++ G+   +SG   +  
Sbjct: 6   IEGVSKSFGGVE-VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDG 64

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
             +    T     +G   Q +AL   LTV +++    +L+   K  A+     ++  +G+
Sbjct: 65  RPV----TGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGL 120

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKK 180
                   + LSGGM++++++A A     + ++LDEP   +D  +R  + + L  +  + 
Sbjct: 121 AGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEET 180

Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAG 207
            +TV+L TH +DEA  L DR+ +++  
Sbjct: 181 RKTVLLVTHDVDEAVYLADRVVVLSNR 207

Length = 248

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score =  113 bits (285), Expect = 1e-30
 Identities = 56/209 (26%), Positives = 107/209 (51%), Gaps = 4/209 (1%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           +  LS R+   + A++ ++      +  + LG NGAGK+T  S+L  +     G   +  
Sbjct: 4   VAGLSFRY-GARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAG 62

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
           HD+R         LGV  Q   L   L+V +++ +++ L  + +  A+  I+ ++  LG+
Sbjct: 63  HDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGL 122

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKK 180
             +       L+GG +R++ +A A +     ++LDEPT G+DP SR +I   +  +   +
Sbjct: 123 AERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQ 182

Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           G +V+  TH +DE +   DR+ ++  G++
Sbjct: 183 GLSVLWATHLVDEIE-ADDRLVVLHRGRV 210

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score =  112 bits (283), Expect = 1e-30
 Identities = 60/211 (28%), Positives = 107/211 (50%), Gaps = 5/211 (2%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
             N+SK +P G  A++ ++++  + +     G +GAGKTT + +L G L  S G  +I  
Sbjct: 4   FHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAG 63

Query: 63  HDIRT----DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIV 118
            D+       +  +RR +GV  Q   L    TV E++    +++   +   Q  +   + 
Sbjct: 64  EDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALR 123

Query: 119 DLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY 178
            +G+ HK  +    LSGG Q+++++A A +     ++ DEPT  +DP     I +LL + 
Sbjct: 124 QVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRL 183

Query: 179 -KKGRTVILTTHYMDEADLLGDRIAIIAAGK 208
            K+G TVI+ TH +   D +  R+ I+  G+
Sbjct: 184 NKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score =  110 bits (279), Expect = 2e-30
 Identities = 51/208 (24%), Positives = 93/208 (44%), Gaps = 41/208 (19%)

Query: 3   IQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
            +N+S  +P   K  +  +++     +  + +G +G+GK+T + +L+ +   +SG   I 
Sbjct: 3   FKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILID 62

Query: 62  NHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
             D+R  D+ ++R+++   PQ   LF   T+ E                           
Sbjct: 63  GVDLRDLDLESLRKNIAYVPQDPFLFSG-TIRE--------------------------- 94

Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
                     N LSGG ++++++A A +     +ILDE TS +DP +   I E L    K
Sbjct: 95  ----------NILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK 144

Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGK 208
           G+TVI+  H +       DRI ++  G+
Sbjct: 145 GKTVIVIAHRLSTIR-DADRIIVLDDGR 171

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score =  112 bits (282), Expect = 2e-30
 Identities = 64/202 (31%), Positives = 107/202 (52%), Gaps = 16/202 (7%)

Query: 16  AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTT---I 72
            + G+++   E +I + LG NGAGKTT +  +MG+LP  SG+ +    DI T +      
Sbjct: 15  ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDI-TGLPPHERA 73

Query: 73  RRSLGVCPQYNALFDKLTVEE--HMWFYSQLKQVPKDLAQLEISNMIVDLGIP---HKRT 127
           R  +G  P+   +F +LTVEE   +  Y++ +   K  A+LE    + +L  P    +R 
Sbjct: 74  RAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRK--ARLE---RVYEL-FPRLKERRK 127

Query: 128 SLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-GRTVIL 186
            LA TLSGG Q+ L++A A +   + ++LDEP+ G+ P     I+E + + +  G T++L
Sbjct: 128 QLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILL 187

Query: 187 TTHYMDEADLLGDRIAIIAAGK 208
                  A  + DR  ++  G+
Sbjct: 188 VEQNARFALEIADRAYVLERGR 209

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score =  109 bits (275), Expect = 3e-29
 Identities = 66/217 (30%), Positives = 123/217 (56%), Gaps = 10/217 (4%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           ++N+SK +  G +A++G++++  E +  + LG +G GKTT + ++ G    +SG   +  
Sbjct: 3   LENVSKFY-GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDG 61

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI--VDL 120
            DI T++   +R +    Q  ALF  LTV E++ F  +LK++PK   +  ++  +  V L
Sbjct: 62  KDI-TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQL 120

Query: 121 -GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IK 177
            G  +++ S    LSGG Q+++++A A +   + ++LDEP   +D   R+ +   L  ++
Sbjct: 121 EGYANRKPS---QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQ 177

Query: 178 YKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
            + G T +  TH  +EA  + DRIA++  GK+Q  G+
Sbjct: 178 KELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score =  109 bits (274), Expect = 4e-29
 Identities = 54/212 (25%), Positives = 108/212 (50%), Gaps = 5/212 (2%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
            +N+SK +P G+ A+  ++ +  + +     G +GAGK+T + ++ G    + G   +  
Sbjct: 4   FENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNG 63

Query: 63  HDI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIV 118
           HD+      ++  +RR +GV  Q   L    TV E++    ++   P    +  +S ++ 
Sbjct: 64  HDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLD 123

Query: 119 DLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY 178
            +G+ HK  +L + LSGG Q+++++A A +     ++ DEPT  +DP     I  L  + 
Sbjct: 124 LVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183

Query: 179 -KKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
            + G TV++ TH ++  + +  R+  +  G+L
Sbjct: 184 NRLGTTVLMATHDLELVNRMRHRVLALEDGRL 215

Length = 223

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  110 bits (276), Expect = 4e-29
 Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 26/226 (11%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           ++NLSK +P G  A+  +N+   + ++ + +G +GAGK+T +  L G++  +SG      
Sbjct: 6   VKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNG 65

Query: 63  HDIRT----DMTTIRRSLGVCPQYNALFDKLTVEE---------HMWFYSQLKQVPKD-- 107
             I      ++  +RR +G+  Q   L  +L+V E            + S      K+  
Sbjct: 66  VQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDK 125

Query: 108 ---LAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD 164
              L  LE       +GI  K    A+TLSGG Q+++++A A +   + ++ DEP + +D
Sbjct: 126 AQALDALE------RVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLD 179

Query: 165 PYSRRSIWELLIKY--KKGRTVILTTHYMDEADLLGDRIAIIAAGK 208
           P S + + ++L     + G TVI+  H +D A    DRI  + AG+
Sbjct: 180 PESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGR 225

Length = 258

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score =  109 bits (274), Expect = 6e-29
 Identities = 64/230 (27%), Positives = 100/230 (43%), Gaps = 29/230 (12%)

Query: 2   AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
            ++ LSKRF  G  AVN +++     +I   +G NGAGKTT  +++ G    SSGT    
Sbjct: 6   EVRGLSKRF-GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFR 64

Query: 62  NHDIRTDMTTIRRSLGVCP--QYNALFDKLTVEEHM------------------WFYSQL 101
             DI          LG+    Q   LF  LTV E++                      + 
Sbjct: 65  GRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEER 124

Query: 102 KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTS 161
           +   +    LE       +G+       A  LS G QR+L +A A     + ++LDEP +
Sbjct: 125 EARERARELLEF------VGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAA 178

Query: 162 GVDPYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           G++P     + EL+ + +   G T++L  H M     L DRI ++  G++
Sbjct: 179 GLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEV 228

Length = 250

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score =  108 bits (273), Expect = 7e-29
 Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 26/226 (11%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           ++NLSK +PNGK A+  ++++    +  + +G +GAGK+T +  L G++  +SG+  I  
Sbjct: 3   VENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDG 62

Query: 63  HDIRT----DMTTIRRSLGVCPQYNALFDKLTVEE---------HMWFYSQLKQVPKD-- 107
            DI       +  +RR +G+  Q   L ++L+V E            + S     PK+  
Sbjct: 63  TDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEK 122

Query: 108 ---LAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD 164
              LA LE       +G+  K    A+ LSGG Q+++++A A +   + ++ DEP + +D
Sbjct: 123 QRALAALE------RVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLD 176

Query: 165 PYSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGK 208
           P S R + +LL  I  ++G TVI++ H +D A    DRI  +  G+
Sbjct: 177 PASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGR 222

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score =  109 bits (275), Expect = 3e-28
 Identities = 64/217 (29%), Positives = 117/217 (53%), Gaps = 5/217 (2%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           + I+N+SK F     AV+ ++++  + +  + LG +G GKTT + M+ G    SSG   +
Sbjct: 6   LEIRNVSKSF-GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILL 64

Query: 61  YNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWF-YSQLKQVPKDLAQLEISNMIVD 119
              DI TD+   +R +G+  Q  ALF  +TVEE++ F     K++ K   +  +   +  
Sbjct: 65  DGEDI-TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALEL 123

Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY- 178
           +G+        + LSGG Q+++++A A +   + ++LDEP S +D   R  + + L +  
Sbjct: 124 VGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQ 183

Query: 179 -KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
            + G T +  TH  +EA  + DRIA++  G+++  G+
Sbjct: 184 RELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGT 220

Length = 352

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score =  109 bits (273), Expect = 6e-28
 Identities = 56/205 (27%), Positives = 107/205 (52%), Gaps = 9/205 (4%)

Query: 13  GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72
           GK  VN  ++   + +I   +G +G+GK+TT+ ML  ++  ++G   I   +I    + +
Sbjct: 5   GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENI-MKQSPV 63

Query: 73  ------RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKR 126
                 R+ +G+  Q  ALF  +T+ ++     +L   P+   + +   ++  +G+    
Sbjct: 64  ELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYE 123

Query: 127 TSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK--GRTV 184
               + LSGGMQ+++ +A A       +++DE  S +DP  R S+ + L K +    +T+
Sbjct: 124 HRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTI 183

Query: 185 ILTTHYMDEADLLGDRIAIIAAGKL 209
           +  TH +DEA  +GDRI I+ AG++
Sbjct: 184 VFITHDLDEAIRIGDRIVIMKAGEI 208

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score =  105 bits (265), Expect = 7e-28
 Identities = 54/221 (24%), Positives = 110/221 (49%), Gaps = 12/221 (5%)

Query: 1   MAIQNLSKRFPNGKL---AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
           + ++N+SK +  G     A+  +N+     +  + +G +G+GK+T +++L G+   +SG 
Sbjct: 2   IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61

Query: 58  AKIYNHDIRT----DMTTIRRS-LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE 112
             I   D+      ++  +RR  +G   Q   L   LTV E++     +        +  
Sbjct: 62  VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121

Query: 113 ISNMIVDLGIPHKRTS-LANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI 171
              ++  LG+  +      + LSGG Q+++++A A I   + ++ DEPT  +D  + + +
Sbjct: 122 AEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEV 181

Query: 172 WELLIKY--KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
            ELL +   ++G+T+I+ TH  + A    DR+  +  GK++
Sbjct: 182 LELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKIE 221

Length = 226

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score =  106 bits (266), Expect = 9e-28
 Identities = 55/224 (24%), Positives = 114/224 (50%), Gaps = 21/224 (9%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           ++NL+  +   +  +  ++++  + +IT+ +G NGAGK+T +  ++G+L  SSG  KI+ 
Sbjct: 7   VENLTVSY-GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFG 65

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDK---LTVEE--------HMWFYSQLKQVPKDLAQL 111
             +R     +R  +G  PQ  +  D+   +TV++           ++ +L +  K+    
Sbjct: 66  KPVRKRRKRLR--IGYVPQ-KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE---- 118

Query: 112 EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI 171
           ++   +  +G+   R      LSGG ++++ +A A       ++LDEP +GVD   ++ I
Sbjct: 119 KVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEI 178

Query: 172 WELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           ++LL + ++ G+TV++ TH +       DR+  +    L   G 
Sbjct: 179 YDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGP 221

Length = 254

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score =  104 bits (263), Expect = 1e-27
 Identities = 58/224 (25%), Positives = 109/224 (48%), Gaps = 21/224 (9%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SS 55
           + +++L+  +   K A+  ++++  + +IT+ +G +G GK+T + +L  +  +       
Sbjct: 1   IELRDLNVYY-GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE 59

Query: 56  GTAKIYNHDIRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWF-----YSQLKQVPKD 107
           G   +   DI     D+  +RR +G+  Q    F   ++ +++ +       +LK+   +
Sbjct: 60  GEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPG-SIYDNVAYGLRLHGIKLKEELDE 118

Query: 108 LAQ--LEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDP 165
             +  L        L    K    A  LSGG Q++L +A A       ++LDEPTS +DP
Sbjct: 119 RVEEALRK----AALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDP 174

Query: 166 YSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
            S   I EL+ + KK  T+++ TH M +A  + DR A +  G+L
Sbjct: 175 ISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRL 218

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score =  108 bits (273), Expect = 3e-27
 Identities = 59/218 (27%), Positives = 106/218 (48%), Gaps = 13/218 (5%)

Query: 5   NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD 64
           NLS R+P+GK A++ LN+     Q+T+ +G +GAGK+T +++L+G L  + G  ++   D
Sbjct: 325 NLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGID 384

Query: 65  IRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFY------SQLKQVPKDLAQLEISNMI 117
           +R       R+ +    Q N      T+ E++          ++         LE     
Sbjct: 385 LRDLSPEAWRKQISWVSQ-NPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVP-- 441

Query: 118 VDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK 177
              G+          LSGG  ++L++A A +  +  ++LDEPT+ +D  + + I + L +
Sbjct: 442 KPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQE 501

Query: 178 YKKGRTVILTTHYMDEADLLG-DRIAIIAAGKLQCCGS 214
             K +TV++ TH     D    DRI ++  G+L   G+
Sbjct: 502 LAKQKTVLVITH--RLEDAADADRIVVLDNGRLVEQGT 537

Length = 559

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score =  103 bits (259), Expect = 5e-27
 Identities = 50/222 (22%), Positives = 107/222 (48%), Gaps = 27/222 (12%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           +++L+  +  G   +  ++      +  + +G NGAGK+T +  ++G+L  +SG+ +++ 
Sbjct: 2   VEDLTVSY-GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDK---LTVEE--------HMWFYSQLKQVPKDLAQL 111
             +  +    R+ +G  PQ     D+   ++V +        H   + +L +  K     
Sbjct: 61  KPLEKE----RKRIGYVPQ-RRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVD- 114

Query: 112 EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI 171
                +  +G+          LSGG Q+++ +A A +     ++LDEP +GVDP ++  I
Sbjct: 115 ---EALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDI 171

Query: 172 WELLIKYK-KGRTVILTTHYMDEADLLGDRIA-----IIAAG 207
           +ELL + + +G T+++ TH +       DR+      ++A+G
Sbjct: 172 YELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVVASG 213

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score =  105 bits (263), Expect = 1e-26
 Identities = 66/240 (27%), Positives = 113/240 (47%), Gaps = 3/240 (1%)

Query: 2   AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           ++ +   R      AV  ++    + +I  FLG NGAGK+TT+ ML G+L  +SG  ++ 
Sbjct: 25  SLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVN 84

Query: 62  NHDIRTDMTTIRRSLG-VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
             D         RS+G V  Q   L+  L   + +     + ++P D     +  +   L
Sbjct: 85  GKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEIL 144

Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-- 178
            +          LS G + +  +A A +   + + LDEPT G+D  ++ +I E L +Y  
Sbjct: 145 DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNE 204

Query: 179 KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQLQ 238
           ++  TV+LTTH  D+   L DR+ +I  G+L   G+   L+  F      S+++K A+  
Sbjct: 205 ERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFSVELKQAKSL 264

Length = 325

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  103 bits (258), Expect = 2e-26
 Identities = 70/239 (29%), Positives = 125/239 (52%), Gaps = 10/239 (4%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           + ++ L+  + +G  A+ G+N+N  + ++T+ LG NGAGK+T    L G+L  SSG    
Sbjct: 6   LKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILF 65

Query: 61  YNHDI---RTDMTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISN 115
               I   R  +  +R S+G+  Q   N LF   +V + + F +   ++P+D  +  + N
Sbjct: 66  DGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSA-SVYQDVSFGAVNLKLPEDEVRKRVDN 124

Query: 116 MIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
            +   GI H +    + LS G ++++++A   +   + ++LDEPT+G+DP     I +LL
Sbjct: 125 ALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLL 184

Query: 176 IKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGK--LQCCGSSVFLKNSFARGYYLSL 230
           ++ +K  G T+I+ TH +D   L  D + ++  G+  LQ     VF +    R   L L
Sbjct: 185 VEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLRL 243

Length = 283

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score =  101 bits (254), Expect = 3e-26
 Identities = 66/214 (30%), Positives = 115/214 (53%), Gaps = 12/214 (5%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           ++N++KRF N   A++ LN++  + +    LG +G GKTTT+ M+ G+   +SG   I  
Sbjct: 3   LENVTKRFGN-VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGG 61

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD--- 119
            D+ TD+    R + +  Q  AL+  +TV +++ F  +L++VPKD    EI   + +   
Sbjct: 62  RDV-TDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKD----EIDERVREVAE 116

Query: 120 -LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY 178
            L I H        LSGG ++++++  A +   +  ++DEP S +D   R  +   L + 
Sbjct: 117 LLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRL 176

Query: 179 KK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
           ++  G T I  TH   EA  + DRIA++  G++Q
Sbjct: 177 QQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score =  103 bits (259), Expect = 3e-26
 Identities = 59/229 (25%), Positives = 111/229 (48%), Gaps = 22/229 (9%)

Query: 3   IQNLSKRFPNGK---LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VS 54
           ++NLS  FP       AV+G++    + +I   +G +G+GK+     +MG+LP     + 
Sbjct: 4   VKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIV 63

Query: 55  SGTAKIYNHDI----RTDMTTIRRS-LGVCPQY--NALFDKLTVEEHMW--FYSQLKQVP 105
            G       D+      ++  IR   + +  Q    +L   +T+ + +        K + 
Sbjct: 64  GGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLS 123

Query: 106 KDLAQLEISNMIVDLGIPHKRTSL---ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSG 162
           K  A+     ++  +GIP     L    + LSGGM++++ +AMA     + +I DEPT+ 
Sbjct: 124 KKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTA 183

Query: 163 VDPYSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           +D   +  I +LL  ++ +KG  +IL TH +     + DR+A++ AG++
Sbjct: 184 LDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRI 232

Length = 316

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score =  101 bits (254), Expect = 5e-26
 Identities = 57/200 (28%), Positives = 101/200 (50%), Gaps = 10/200 (5%)

Query: 16  AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTT---I 72
           A+ G+++     +I + LG NGAGKTT +  +MG++   SG       DI T +      
Sbjct: 18  ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDI-TGLPPHERA 76

Query: 73  RRSLGVCPQYNALFDKLTVEEH--MWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLA 130
           R  +   P+   +F +LTVEE+  +  Y++  +  ++    E+  +   L    +R   A
Sbjct: 77  RLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLK--ERRNQRA 134

Query: 131 NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK--GRTVILTT 188
            TLSGG Q+ L++A A +   + ++LDEP+ G+ P     I+E + + +K  G T++L  
Sbjct: 135 GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVE 194

Query: 189 HYMDEADLLGDRIAIIAAGK 208
                A  + DR  ++  G+
Sbjct: 195 QNARFALEIADRGYVLENGR 214

Length = 237

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score =  100 bits (251), Expect = 9e-26
 Identities = 57/216 (26%), Positives = 114/216 (52%), Gaps = 9/216 (4%)

Query: 3   IQNLSKRFPNGKL---AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           ++N+SK F +      A+  ++++  + +I   +G +GAGK+T I  + G+   +SG+  
Sbjct: 4   LKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVL 63

Query: 60  IYNHDI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISN 115
           +   D+      ++   RR +G+  Q+  L    TV E++    ++  VPK   +  +  
Sbjct: 64  VDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLE 123

Query: 116 MIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
           ++  +G+  K  +    LSGG ++++ +A A     + ++ DE TS +DP + +SI  LL
Sbjct: 124 LLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALL 183

Query: 176 --IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
             I  + G T++L TH M+    + DR+A++  G++
Sbjct: 184 RDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEV 219

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 99.2 bits (247), Expect = 4e-25
 Identities = 63/215 (29%), Positives = 115/215 (53%), Gaps = 5/215 (2%)

Query: 4   QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
           +NL+K +  G+  V  +++     +I   LG NGAGKTTT  M++G++P  +G   I + 
Sbjct: 7   KNLAKAY-KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDE 65

Query: 64  DIR--TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ-VPKDLAQLEISNMIVDL 120
           DI         RR +G  PQ  ++F +L+V +++    Q++  +  +  +   + ++ + 
Sbjct: 66  DISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEF 125

Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK- 179
            I H R S+  +LSGG +R++ +A A     + ++LDEP +GVDP S   I  ++   + 
Sbjct: 126 HIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD 185

Query: 180 KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
            G  V++T H + E   + +R  I++ G L   G+
Sbjct: 186 SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGT 220

Length = 241

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 98.1 bits (245), Expect = 4e-25
 Identities = 60/211 (28%), Positives = 108/211 (51%), Gaps = 12/211 (5%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           I+N+S  +  G   ++ L+++ Y  +I +  G NGAGKTT   +L G++  SSG+  +  
Sbjct: 2   IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL-- 59

Query: 63  HDIRTDMTTIRRSLGVCPQ---YNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
           +         R+S+G   Q   Y    D  +V E +     LK++     Q     ++ D
Sbjct: 60  NGKPIKAKERRKSIGYVMQDVDYQLFTD--SVREEL--LLGLKELDAGNEQ--AETVLKD 113

Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK-Y 178
           L +   +     +LSGG +++L++A A + G   +I DEPTSG+D  +   + EL+ +  
Sbjct: 114 LDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELA 173

Query: 179 KKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
            +G+ VI+ TH  +    + DR+ ++A G +
Sbjct: 174 AQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 97.7 bits (244), Expect = 8e-25
 Identities = 56/216 (25%), Positives = 106/216 (49%), Gaps = 13/216 (6%)

Query: 8   KRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP---VSSGTAKIYNHD 64
           K +      +N ++++    Q+ + LG +G+GKTT +  + G +     +SG        
Sbjct: 14  KNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQP 73

Query: 65  IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIV---DL 120
            + D    ++ +    Q + L   LTV E + + + L+       A  +     V   DL
Sbjct: 74  RKPD--QFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL 131

Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-K 179
            +     +L   +SGG +R++S+A+  +   + +ILDEPTSG+D ++  ++   L +  +
Sbjct: 132 ALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR 191

Query: 180 KGRTVILTTHYMDEADL--LGDRIAIIAAGKLQCCG 213
           + R VILT H    +DL  L DRI ++++G++   G
Sbjct: 192 RNRIVILTIH-QPRSDLFRLFDRILLLSSGEIVYSG 226

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 99.9 bits (250), Expect = 4e-24
 Identities = 53/218 (24%), Positives = 106/218 (48%), Gaps = 12/218 (5%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           + ++ +SK F  G  A++G+++     ++ + LG NGAGK+T + +L G+ P  SG   I
Sbjct: 9   LELRGISKSFG-GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGE--I 65

Query: 61  YNHDIRTDMTTIRRSL----GVCPQYNALFDKLTVEEHMWFYSQLKQVPK--DLAQLEI- 113
                    ++ R +L        Q  +L   L+V E+++   +  +     D   +   
Sbjct: 66  LIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR 125

Query: 114 -SNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW 172
              ++  LG+     +L   LS   ++ + +A A    +R +ILDEPT+ +       ++
Sbjct: 126 ARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLF 185

Query: 173 ELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           +L+ + K +G  +I  +H +DE   + DRI ++  G++
Sbjct: 186 DLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRV 223

Length = 500

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 98.1 bits (245), Expect = 4e-24
 Identities = 58/217 (26%), Positives = 118/217 (54%), Gaps = 10/217 (4%)

Query: 3   IQNLSKRFPNGK----LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA 58
           ++N+SK F         A++ +++   + +I   +G++GAGK+T + ++  +   +SG+ 
Sbjct: 4   LENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV 63

Query: 59  KIYNHDI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEIS 114
            +   D+      ++  +R+ +G+  Q+  L    TV E++ F  +L  VPK   +  ++
Sbjct: 64  FVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVA 123

Query: 115 NMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
            ++  +G+  K       LSGG ++++++A A     + ++ DE TS +DP + +SI EL
Sbjct: 124 ELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILEL 183

Query: 175 L--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           L  I  + G T++L TH M+    + DR+A++  G+L
Sbjct: 184 LKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRL 220

Length = 339

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score =   99 bits (250), Expect = 6e-24
 Identities = 59/237 (24%), Positives = 111/237 (46%), Gaps = 15/237 (6%)

Query: 3   IQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
            +N+S R+ P+    +  L++     +  + +G +G+GK+T + +L+G+     G   + 
Sbjct: 474 FENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLD 533

Query: 62  NHDI-RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWF------YSQLKQVPKDL-AQLEI 113
             D+   D+ ++RR +G   Q   LF   ++ E++          ++ +  +   A   I
Sbjct: 534 GVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFI 592

Query: 114 SNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
            N+   +G           LSGG +++L++A A +   + ++LDE TS +DP +   I +
Sbjct: 593 ENL--PMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQ 650

Query: 174 LLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSL 230
            L++  +GRTVI+  H         DRI ++  GK+   GS   L      G Y  L
Sbjct: 651 NLLQILQGRTVIIIAHR-LSTIRSADRIIVLDQGKIVEQGSHEELLAQ--GGLYARL 704

Length = 709

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 95.5 bits (238), Expect = 7e-24
 Identities = 58/212 (27%), Positives = 104/212 (49%), Gaps = 3/212 (1%)

Query: 2   AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           ++++L KR      A+ G++    + +I  F+G NGAGKTTT+ +L G+L  +SG  ++ 
Sbjct: 22  SLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVA 81

Query: 62  NHDIRTDMTTIRRSLG-VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
                       R +G V  Q   L+  L V +  +  + +  +P    +  +  +   L
Sbjct: 82  GLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELL 141

Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
            +     +    LS G + +  +A A +     + LDEPT G+D  ++ +I   L +Y +
Sbjct: 142 DLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNR 201

Query: 181 GR--TVILTTHYMDEADLLGDRIAIIAAGKLQ 210
            R  TV+LT+HYM + + L  R+ +I  G+L 
Sbjct: 202 ERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 95.4 bits (238), Expect = 1e-23
 Identities = 59/234 (25%), Positives = 115/234 (49%), Gaps = 12/234 (5%)

Query: 3   IQNLSKRFPNGKL---AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           ++NLS  +  GK    A+N +++     +    +G +G+GK+T   +L G+   SSG+  
Sbjct: 6   VRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSIL 65

Query: 60  IYNHDI--RTDMTTIRRSLGVCPQ--YNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISN 115
           +    +  +       R + +  Q  Y++L  + TV   +     L+      +Q  I+ 
Sbjct: 66  LDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL--SEPLRPHGLSKSQQRIAE 123

Query: 116 MIVDLGIPHK-RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
           ++  +G+P        + LSGG ++++++A A I   + +ILDEPTS +D   +  I  L
Sbjct: 124 LLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNL 183

Query: 175 LIKYKKGR--TVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGY 226
           L++ KK R  T +  +H +   + + DRIA++  G++   G +  L +  +  Y
Sbjct: 184 LLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHPY 237

Length = 252

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 95.1 bits (237), Expect = 1e-23
 Identities = 65/229 (28%), Positives = 117/229 (51%), Gaps = 30/229 (13%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           ++NLSK +PNGK A+  +N+N    +  + +G +GAGK+T +  +  ++  SSG+  +  
Sbjct: 4   VENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEG 63

Query: 63  HDI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHM----------------WFYSQLK 102
            DI       +  +RR +G+  Q+  L ++LTV E++                 F  + K
Sbjct: 64  TDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDK 123

Query: 103 QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSG 162
           +  + L+ LE       +G+  K    A+ LSGG Q+++++A A       ++ DEP + 
Sbjct: 124 E--RALSALE------RVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIAS 175

Query: 163 VDPYSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           +DP + + + + L  I  + G TVI+  H +D A    DRI  + AG++
Sbjct: 176 LDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEI 224

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 96.5 bits (240), Expect = 2e-23
 Identities = 65/216 (30%), Positives = 117/216 (54%), Gaps = 9/216 (4%)

Query: 3   IQNLSKRFPNGKLAVNGL-NVNFY--EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           + N++K F  G   +  L NV+ +    QI   +G +GAGK+T I  +  +   +SG+  
Sbjct: 4   LSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVI 63

Query: 60  IYNHDIRT----DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISN 115
           +   D+ T    ++T  RR +G+  Q+  L    TV  ++    +L   PKD  + +++ 
Sbjct: 64  VDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTE 123

Query: 116 MIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
           ++  +G+  K  S  + LSGG ++++++A A     + ++ DE TS +DP + +SI ELL
Sbjct: 124 LLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELL 183

Query: 176 --IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
             I  + G T++L TH MD    + D +A+I+ G+L
Sbjct: 184 KEINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 95.1 bits (237), Expect = 3e-23
 Identities = 62/214 (28%), Positives = 111/214 (51%), Gaps = 11/214 (5%)

Query: 11  PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI----- 65
           P  + A+  +NV+       + +GH G+GK+T +  L G+L  +SGT  I    I     
Sbjct: 17  PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKK 76

Query: 66  RTDMTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP 123
              +  +R+ +G+  Q+  + LF++ TVE+ + F      V ++ A+ +   MI  +G+P
Sbjct: 77  NKKLKPLRKKVGIVFQFPEHQLFEE-TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLP 135

Query: 124 HK-RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY--KK 180
            +        LSGG  R++++A         ++LDEPT+G+DP  R+ + E+  K   +K
Sbjct: 136 EELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEK 195

Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           G T +L TH M++A    D+I ++  G +   G+
Sbjct: 196 GLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGT 229

Length = 290

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 94.7 bits (236), Expect = 3e-23
 Identities = 67/228 (29%), Positives = 117/228 (51%), Gaps = 28/228 (12%)

Query: 3   IQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           ++N+S  +PN    A+  ++    E +  + LGHNG+GK+T   +L G+L   SG  KI 
Sbjct: 10  VENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKID 69

Query: 62  NHDIRTD-MTTIRRSLGVCPQY-NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
              I  + +  IR+ +G+  Q  +  F   TVE+ + F  + K+VP      ++ ++I D
Sbjct: 70  GITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPK----KMKDIIDD 125

Query: 120 L----GI-------PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR 168
           L    G+       P         LSGG ++++++A         +I DE TS +DP  +
Sbjct: 126 LAKKVGMEDYLDKEPQN-------LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGK 178

Query: 169 RSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           R I +++  ++  + +T+I  TH MDEA +L D++ + + GKL   G 
Sbjct: 179 REIKKIMVDLRKTRKKTLISITHDMDEA-ILADKVIVFSEGKLIAQGK 225

Length = 271

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 93.3 bits (233), Expect = 5e-23
 Identities = 62/223 (27%), Positives = 117/223 (52%), Gaps = 17/223 (7%)

Query: 3   IQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           I+NLSK F  G   V  G++++  + ++   +G +G+GK+T +  L G+    SG+  + 
Sbjct: 5   IKNLSKSF--GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVD 62

Query: 62  NHDI--RTDMTTIRRSLGVCPQ-YNALFDKLTVEEH-----MWFYSQLKQVPKDLAQLEI 113
             D+  + D+  +RR +G+  Q +N LF  LTV E+     +     +K++ K  A+ + 
Sbjct: 63  GEDVGDKKDILKLRRKVGMVFQQFN-LFPHLTVLENVTLAPVK----VKKLSKAEAREKA 117

Query: 114 SNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
             ++  +G+  K  +    LSGG Q+++++A A     + ++ DEPTS +DP     + +
Sbjct: 118 LELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD 177

Query: 174 LLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 215
           ++    + G T+I+ TH M  A  + DR+  +  GK+   G  
Sbjct: 178 VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPP 220

Length = 240

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 93.2 bits (232), Expect = 1e-22
 Identities = 60/211 (28%), Positives = 111/211 (52%), Gaps = 7/211 (3%)

Query: 5   NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD 64
           +L   +P+G  A+ G+N    + ++ + LG NGAGK+T      G+L  +SG   I    
Sbjct: 6   DLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEP 65

Query: 65  IRTD---MTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
           I+ D   +  +R+++G+  Q   + LF   TVEE + F      + K+  +  +   +  
Sbjct: 66  IKYDKKSLLEVRKTVGIVFQNPDDQLFAP-TVEEDVAFGPLNLGLSKEEVEKRVKEALKA 124

Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY- 178
           +G+        + LSGG ++++++A         ++LDEPTSG+DP     I +LL    
Sbjct: 125 VGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLN 184

Query: 179 KKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           K+G T+I++TH +D   +  D++ +++ GK+
Sbjct: 185 KEGITIIISTHDVDLVPVYADKVYVMSDGKI 215

Length = 275

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 90.7 bits (226), Expect = 2e-22
 Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 30/184 (16%)

Query: 7   SKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR 66
           S    +GK  +  ++      ++T+ +G +GAGK+T ++ L G       + ++  +   
Sbjct: 15  SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRP 74

Query: 67  TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKR 126
            D  + R+ +G  PQ + L   LTV E + F ++L+                        
Sbjct: 75  LDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRG----------------------- 111

Query: 127 TSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVI 185
                 LSGG ++++S+A+  +     + LDEPTSG+D  S   +  LL +    GRT+I
Sbjct: 112 ------LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTII 165

Query: 186 LTTH 189
            + H
Sbjct: 166 CSIH 169

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 95.3 bits (238), Expect = 2e-22
 Identities = 60/213 (28%), Positives = 110/213 (51%), Gaps = 7/213 (3%)

Query: 2   AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI- 60
            ++ ++KRFP G +A + ++++  + +I + LG NGAGK+T + +L G+    SG  ++ 
Sbjct: 6   EMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVD 64

Query: 61  -YNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK-DLAQL--EISNM 116
                I++    IR  +G+  Q+  L   LTV E++    +  +    D  Q    I  +
Sbjct: 65  GKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKEL 124

Query: 117 IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI 176
               G+P    +    LS G Q+++ +  A   G+R +ILDEPT+ + P     ++E+L 
Sbjct: 125 SERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILR 184

Query: 177 KYKK-GRTVILTTHYMDEADLLGDRIAIIAAGK 208
           +    G+T+I  TH + E   + DR+ ++  GK
Sbjct: 185 RLAAEGKTIIFITHKLKEVMAIADRVTVLRRGK 217

Length = 501

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 88.1 bits (219), Expect = 3e-22
 Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 8/124 (6%)

Query: 41  TTTISMLMGMLPVSSGTAKIYNHDIRTDMTT--IRRSLGVCPQYNALFDKLTVEEHMWFY 98
           +T + ++ G+L  +SGT  +   D     +   +R+ +GV  Q   LF +LTV E+++F 
Sbjct: 1   STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60

Query: 99  SQLKQVPKDLAQLEISNMIVDLGIPHKR-TSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157
                +    A       +  +G+P         TLSGG ++++++A A +   + ++LD
Sbjct: 61  -----LRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLD 115

Query: 158 EPTS 161
           EPT+
Sbjct: 116 EPTA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 91.0 bits (227), Expect = 3e-22
 Identities = 59/204 (28%), Positives = 107/204 (52%), Gaps = 22/204 (10%)

Query: 16  AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTT---I 72
            + G+++   + ++T  LG NG GKTT +  LMG+LPV SG+ ++   DI T +      
Sbjct: 15  ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDI-TKLPPHERA 73

Query: 73  RRSLGVCPQYNALFDKLTVEEHMW-----FYSQLKQVPKDLAQL--EISNMIVDLGIPHK 125
           R  +   PQ   +F +LTVEE++         + +++P ++ +L   +  M+       +
Sbjct: 74  RAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEML------GR 127

Query: 126 RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKGRT 183
           R      LSGG Q++L++A A +   + ++LDEPT G+ P   + I  ++  ++ + G  
Sbjct: 128 R---GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMA 184

Query: 184 VILTTHYMDEADLLGDRIAIIAAG 207
           ++L   Y+D A  L DR  ++  G
Sbjct: 185 ILLVEQYLDFARELADRYYVMERG 208

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 91.0 bits (226), Expect = 4e-22
 Identities = 65/203 (32%), Positives = 105/203 (51%), Gaps = 7/203 (3%)

Query: 10  FPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-D 68
              GK  +  ++V F    I + +G +GAGK+T I ++  ++  + G+  I   DI+T D
Sbjct: 12  SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTID 71

Query: 69  MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTS 128
           +  +RR +G+  Q   LF+  TV++++ +   LK   +    +E    IV L   +  T 
Sbjct: 72  VIDLRRKIGMVFQQPHLFEG-TVKDNIEYGPMLKG--EKNVDVEYYLSIVGLNKEY-ATR 127

Query: 129 LANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI--KYKKGRTVIL 186
               LSGG  +++S+A         ++LDEPTS +DP S   I EL++  K K   TVI 
Sbjct: 128 DVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIW 187

Query: 187 TTHYMDEADLLGDRIAIIAAGKL 209
            TH M++A  +GD  A +  G L
Sbjct: 188 ITHNMEQAKRIGDYTAFLNKGIL 210

Length = 241

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 93.2 bits (232), Expect = 4e-22
 Identities = 56/207 (27%), Positives = 107/207 (51%), Gaps = 7/207 (3%)

Query: 15  LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI----RTDMT 70
           + VN  +++  E +I   +G +G+GK+T + +L  ++  + G   +   DI      ++ 
Sbjct: 42  VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELR 101

Query: 71  TIRR-SLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSL 129
            +RR  + +  Q  AL    TV E++ F  +++ VPK   +      +  +G+       
Sbjct: 102 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKY 161

Query: 130 ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK--GRTVILT 187
            N LSGGMQ+++ +A A       +++DE  S +DP  R  + + L++ +    +T++  
Sbjct: 162 PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFI 221

Query: 188 THYMDEADLLGDRIAIIAAGKLQCCGS 214
           TH +DEA  +GDRIAI+  G++   G+
Sbjct: 222 THDLDEALRIGDRIAIMKDGEIVQVGT 248

Length = 386

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 90.8 bits (226), Expect = 7e-22
 Identities = 61/207 (29%), Positives = 112/207 (54%), Gaps = 9/207 (4%)

Query: 15  LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI----RTDMT 70
           + VN ++++  E +I   +G +G+GK+T +  +  ++  +SG   I   DI    R ++ 
Sbjct: 38  VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELR 97

Query: 71  TIRR-SLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL-GIPHKRTS 128
            +RR  + +  Q  AL    TV E++ F  +++ VP+   + E +   ++L G+      
Sbjct: 98  ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPR-AEREERAAEALELVGLEGWEHK 156

Query: 129 LANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY--KKGRTVIL 186
             + LSGGMQ+++ +A A       +++DE  S +DP  RR + + L++   +  +T++ 
Sbjct: 157 YPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVF 216

Query: 187 TTHYMDEADLLGDRIAIIAAGKLQCCG 213
            TH +DEA  LGDRIAI+  G+L   G
Sbjct: 217 ITHDLDEALRLGDRIAIMKDGRLVQVG 243

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 90.4 bits (225), Expect = 7e-22
 Identities = 63/233 (27%), Positives = 115/233 (49%), Gaps = 37/233 (15%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTT---TISMLMGMLPVSSGT 57
           + I+NL+  +   K A+  +N++  ++Q+T+ +G +G GK+T   +++ +  ++P     
Sbjct: 2   IEIENLNLFY-GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIE 60

Query: 58  AKIY--NHDI---RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE 112
            K+     DI   + D+  +RR +G+  Q    F   ++ +++ +  +L  + KD  +L+
Sbjct: 61  GKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPM-SIYDNIAYGPRLHGI-KDKKELD 118

Query: 113 ISNMIVDLGIPHKRTSL----------------ANTLSGGMQRKLSVAMAFIGGSRTVIL 156
               IV         SL                A  LSGG Q++L +A A       ++L
Sbjct: 119 ---EIV-------EESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLL 168

Query: 157 DEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           DEPTS +DP +   I EL+ + KK  T+++ TH M +A  + DR A    G+L
Sbjct: 169 DEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGEL 221

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 90.2 bits (224), Expect = 9e-22
 Identities = 66/233 (28%), Positives = 116/233 (49%), Gaps = 25/233 (10%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISML--MGML--PVSSG 56
           + + +LS  + N K A+N ++++FY ++IT+ +G +G+GK+T +  +  M  L   V+  
Sbjct: 6   LQVSDLSVYY-NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTIT 64

Query: 57  TAKIYN-HDI---RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK---------- 102
            + +YN H+I   RTD   +R+ +G+  Q    F  +++ E++ +  +LK          
Sbjct: 65  GSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPF-PMSIYENVVYGLRLKGIKDKQVLDE 123

Query: 103 QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSG 162
            V K L    I + + D     +    A  LSGG Q+++ +A       + ++LDEPTS 
Sbjct: 124 AVEKSLKGASIWDEVKD-----RLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSA 178

Query: 163 VDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 215
           +DP S   I E L+  K   T++L T  M +A  + DR      G L     +
Sbjct: 179 LDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDT 231

Length = 252

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 93.0 bits (232), Expect = 1e-21
 Identities = 57/243 (23%), Positives = 117/243 (48%), Gaps = 19/243 (7%)

Query: 3   IQNLSKRFPNGKLAVNGL-NVNF--YEDQITSFLGHNGAGKTTTISMLMGMLP----VSS 55
           ++NL+  F      V  + +V+F     +I   +G +G+GK+T    LMG+LP    ++S
Sbjct: 8   VENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITS 67

Query: 56  GTAKIYNHDI----RTDMTTIR-RSLGVCPQ--YNALFDKLTVEEHMWFYSQLKQ-VPKD 107
           G   +   D+      +M  +R + + +  Q    +L   +T+ + +    +L     + 
Sbjct: 68  GEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRA 127

Query: 108 LAQLEISNMIVDLGIPHK--RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDP 165
            A+     ++  +G+P    R    + LSGGM++++ +AMA     + +I DEPT+ +D 
Sbjct: 128 EARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDV 187

Query: 166 YSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFA 223
            ++  I +LL  ++ + G  V+  TH +     L DR+ ++  G++   G +  + ++  
Sbjct: 188 TTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQ 247

Query: 224 RGY 226
             Y
Sbjct: 248 HPY 250

Length = 539

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 88.7 bits (220), Expect = 3e-21
 Identities = 57/214 (26%), Positives = 113/214 (52%), Gaps = 4/214 (1%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           I N+SKRF + + A++ +N+      + + LG +G+GK+T + ++ G+    SG  ++  
Sbjct: 3   IANISKRFGSFQ-ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNG 61

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
            D  T +    R +G   Q+ ALF  LTV +++ F  ++++ PK   +  +  ++  + +
Sbjct: 62  QDA-TRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQL 120

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI--WELLIKYKK 180
                   N LSGG ++++++A A     + ++LDEP   +D   R+ +  W   +  + 
Sbjct: 121 EGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEV 180

Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
             T +  TH  +EA  + DRI +++ GK++  GS
Sbjct: 181 HVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGS 214

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 86.7 bits (216), Expect = 3e-21
 Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 51/208 (24%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           ++ ++KRF   K A++G++++    ++ + LG NGAGK+T + +L G+    SG   I  
Sbjct: 3   LRGITKRFGGVK-ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGE--ILV 59

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
                   + R +                                             GI
Sbjct: 60  DGKEVSFASPRDAR------------------------------------------RAGI 77

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-G 181
                ++   LS G ++ + +A A    +R +ILDEPT+ + P     +++++ + +  G
Sbjct: 78  -----AMVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQG 132

Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGKL 209
             VI  +H +DE   + DR+ ++  G++
Sbjct: 133 VAVIFISHRLDEVFEIADRVTVLRDGRV 160

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 91.1 bits (227), Expect = 5e-21
 Identities = 58/241 (24%), Positives = 109/241 (45%), Gaps = 37/241 (15%)

Query: 3   IQNLSKRFPNGK----------LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP 52
           ++NLSKR+ + K           AV+ ++ +  E +    +G +G+GK+T   +L G+LP
Sbjct: 283 VRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP 342

Query: 53  VSSGTAKIYNHDIRTDMTTIR-RSLGVCPQ------YNALFDKLTVEE---------HMW 96
            SSG+      D   D+T    R L    Q      Y++L  ++TV +            
Sbjct: 343 PSSGSIIFDGQD--LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG 400

Query: 97  FYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL 156
             ++ +    +L +L      V L          + LSGG ++++++A A     + +IL
Sbjct: 401 SGAERRARVAELLEL------VGLPPEF-LDRYPHELSGGQRQRVAIARALALEPKLLIL 453

Query: 157 DEPTSGVDPYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           DEP S +D   +  +  LL   ++  G T +  +H +     + DR+A++  G++   G 
Sbjct: 454 DEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGP 513

Query: 215 S 215
           +
Sbjct: 514 T 514

Length = 539

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 88.1 bits (219), Expect = 6e-21
 Identities = 58/216 (26%), Positives = 109/216 (50%), Gaps = 10/216 (4%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           + I+N+SK +   K+ ++ ++++  +  ITS +G NGAGK+T +SM+  +L   SG   I
Sbjct: 2   ITIENVSKSY-GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITI 60

Query: 61  YNHDI-RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWF----YSQLKQVPKDLAQLEISN 115
              ++  T    + + L +  Q N +  +LTV + + F    YSQ +   +D  +  I+ 
Sbjct: 61  DGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKED--RRIINE 118

Query: 116 MIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
            I  L +        + LSGG +++  +AM     +  V+LDEP + +D      I ++L
Sbjct: 119 AIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKIL 178

Query: 176 IKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
            +     G+T+++  H ++ A    D I  +  GK+
Sbjct: 179 RRLADELGKTIVVVLHDINFASCYSDHIVALKNGKV 214

Length = 252

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 90.8 bits (226), Expect = 7e-21
 Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 20/190 (10%)

Query: 2   AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
             +N+SK +  G+L +  L+         + +G NGAGK+T + +L G L   SGT K+ 
Sbjct: 323 EFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVG 382

Query: 62  NHDIRTDMTTIRRSLGVCPQ-YNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
                         +G   Q  + L    TV E +       +   D  + E+   +   
Sbjct: 383 ET----------VKIGYFDQHRDELDPDKTVLEELS------EGFPDGDEQEVRAYLGRF 426

Query: 121 GIPHKR-TSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
           G   +        LSGG + +L +A   +     ++LDEPT+ +D  S  ++ E L+ + 
Sbjct: 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF- 485

Query: 180 KGRTVILTTH 189
           +G TV+L +H
Sbjct: 486 EG-TVLLVSH 494

Length = 530

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 90.6 bits (225), Expect = 8e-21
 Identities = 61/226 (26%), Positives = 115/226 (50%), Gaps = 20/226 (8%)

Query: 3   IQNLSKRF---PNGKL-AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA 58
           ++N+SKR+     G + AV+ +++   E +I   +G +GAGKTT   ++ G+L  +SG  
Sbjct: 282 VRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEV 341

Query: 59  KIYNHDIRTDMTTIR--------RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQ 110
            +   D   DMT           R +G+  Q   L+   TV +++     L ++P +LA+
Sbjct: 342 NVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELAR 400

Query: 111 LEISNMIVDLGIPHKRT-----SLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDP 165
           ++    +  +G   ++         + LS G + ++++A   I   R VILDEPT  +DP
Sbjct: 401 MKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDP 460

Query: 166 YSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
            ++  +   ++K ++   +T I+ +H MD    + DR A++  GK+
Sbjct: 461 ITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKI 506

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 90.2 bits (224), Expect = 1e-20
 Identities = 54/215 (25%), Positives = 104/215 (48%), Gaps = 8/215 (3%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           +  +N+S  +P  K  +  ++ +    +  + +G +G+GK+T I +L+ +   +SG   I
Sbjct: 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388

Query: 61  YNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWF---YSQLKQVPKDLAQLEISNM 116
              DIR   + ++R+ +G+  Q   LF   T+ E++      +  +++ + L        
Sbjct: 389 DGIDIRDISLDSLRKRIGIVSQDPLLFSG-TIRENIALGRPDATDEEIEEALKLANAHEF 447

Query: 117 IVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
           I +L  G           LSGG +++L++A A +     +ILDE TS +D  +   I + 
Sbjct: 448 IANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDA 507

Query: 175 LIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           L K  KGRT ++  H +       DRI ++  G++
Sbjct: 508 LKKLLKGRTTLIIAHRLSTI-KNADRIIVLDNGRI 541

Length = 567

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 86.9 bits (215), Expect = 2e-20
 Identities = 55/214 (25%), Positives = 117/214 (54%), Gaps = 14/214 (6%)

Query: 16  AVNGLNVNFYEDQITSFLGHNGAGKTT---TISMLMGMLPVSSGTAKI-YNHD----IRT 67
           A+  +N++  E+++T+ +G +G GK+T   T+++++ M+P    T ++ YN       + 
Sbjct: 27  ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86

Query: 68  DMTTIRRSLGVC-----PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
           D+  +R+++G+      P   ++FD +     +      K++ +++ +  + ++ +   +
Sbjct: 87  DLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKL-QEIVEKSLKDVALWDEV 145

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGR 182
             +  + A +LSGG Q++L +A A       +++DEPTS +DP S R I EL++K K+  
Sbjct: 146 KDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKY 205

Query: 183 TVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV 216
           T+++ TH M +A  + D+ A    G+L  C  + 
Sbjct: 206 TIVIVTHNMQQAARVSDQTAFFYMGELVECNDTN 239

Length = 259

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 87.5 bits (217), Expect = 2e-20
 Identities = 61/244 (25%), Positives = 117/244 (47%), Gaps = 22/244 (9%)

Query: 11  PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG---------TAKIY 61
           P    A++ +N  F + +  + +G  G+GK+T I  +  +L  ++G         T K  
Sbjct: 17  PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTK 76

Query: 62  NHDIRTDMTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
           +  IR     +R+ +G+  Q+  + LF+  TVE  + F  +  ++  D  +     +++D
Sbjct: 77  DKYIRP----VRKRIGMVFQFPESQLFED-TVEREIIFGPKNFKMNLDEVKNYAHRLLMD 131

Query: 120 LGIPHKRTSLAN-TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--I 176
           LG      S +   +SGG  RK+++          ++LDEPT+G+DP S+R +  LL  +
Sbjct: 132 LGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSL 191

Query: 177 KYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL--QCCGSSVFLKNSFARGYYLSLDMKS 234
           +  + +T+IL +H M+E     D + ++  G +  Q     +F        +++ L  + 
Sbjct: 192 QTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKLADWHIGLP-EI 250

Query: 235 AQLQ 238
            QLQ
Sbjct: 251 VQLQ 254

Length = 286

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 85.2 bits (211), Expect = 2e-20
 Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 7/191 (3%)

Query: 10  FPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI---R 66
           +P G   + GLN      ++ + LG NGAGK+T +  L G+L   SG   I    +   R
Sbjct: 1   YPGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSR 60

Query: 67  TDMTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH 124
             +   R+ +G+  Q   + LF    V++ + F      + +   +  +   +  +G   
Sbjct: 61  KGLLERRQRVGLVFQDPDDQLFAA-DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASG 119

Query: 125 KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRT 183
            R    + LSGG ++++++A A       ++LDEPT+G+DP  R  +  +L + + +G T
Sbjct: 120 LRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMT 179

Query: 184 VILTTHYMDEA 194
           V+++TH +D A
Sbjct: 180 VVISTHDVDLA 190

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 87.4 bits (217), Expect = 2e-20
 Identities = 72/236 (30%), Positives = 120/236 (50%), Gaps = 28/236 (11%)

Query: 3   IQNLS----KRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA 58
           I+NL+    +  P  K A++ +N+   + +    +GH G+GK+T I  L G+L  +SG  
Sbjct: 5   IENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI 64

Query: 59  KIYNHDI---RTDMTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDL--AQL 111
            I   DI   +  ++ IR+ +G+  QY    LF++ T+E+ + F       P +L  ++ 
Sbjct: 65  IIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE-TIEKDIAFG------PINLGLSEE 117

Query: 112 EISN-----M-IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDP 165
           EI N     M IV L     +      LSGG +R++++A       + +ILDEPT+G+DP
Sbjct: 118 EIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDP 177

Query: 166 YSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG--SSVF 217
             R  I   +  +  +   T+IL +H M++   L DRI ++  GK +  G    VF
Sbjct: 178 KGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233

Length = 287

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 88.1 bits (218), Expect = 3e-20
 Identities = 59/230 (25%), Positives = 112/230 (48%), Gaps = 9/230 (3%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           I +L   +      ++ L++     ++ + +G +G GKTT +  + G +  +  T +I  
Sbjct: 8   IDHLRVAY-GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAI 66

Query: 63  HDIRTDMTTI---RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
            D   D+T     +R L +  Q  ALF  L VE+++ F  + +++PK      +++ +  
Sbjct: 67  AD--RDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKL 124

Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
           +G+      L   LSGGMQ+++++A A       ++LDEP S +D   R ++ E +    
Sbjct: 125 VGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALH 184

Query: 180 K---GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGY 226
           +     T++  TH  D+A  L D+  I+  G+L   G    L ++ A G+
Sbjct: 185 EELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGF 234

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 84.4 bits (210), Expect = 3e-20
 Identities = 43/179 (24%), Positives = 73/179 (40%), Gaps = 38/179 (21%)

Query: 37  GAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC-----PQYNALFDKLTV 91
           G G+T     L G+ P +SG   +    +           G+       +   L   L+V
Sbjct: 36  GNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSV 95

Query: 92  EEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGS 151
            E++                                +L++ LSGG Q+K+ +A       
Sbjct: 96  AENI--------------------------------ALSSLLSGGNQQKVVLARWLARDP 123

Query: 152 RTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           R +ILDEPT GVD  ++  I+ L+ +    G+ V+L +  +DE   L DRI ++  G++
Sbjct: 124 RVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 85.0 bits (211), Expect = 3e-20
 Identities = 59/215 (27%), Positives = 103/215 (47%), Gaps = 13/215 (6%)

Query: 5   NLSKRFPNGKLAVNGLNVNF-YEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
            L       +L    L ++F   +++T   G +GAGK+T +  + G+     GT  + N 
Sbjct: 1   MLCVDI-EKRLPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVL-NG 58

Query: 64  ------DIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI 117
                   + ++   +R +G+  Q  ALF  L V E++ F  + K+  +D   ++   ++
Sbjct: 59  TVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVD--ELL 116

Query: 118 VDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK 177
             LG+ H        LSGG ++++++A A       ++LDEP S +D   R  +   L +
Sbjct: 117 DLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQ 176

Query: 178 YKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
            KK     VI  TH + EA+ L DRI ++  G+LQ
Sbjct: 177 IKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 85.5 bits (212), Expect = 4e-20
 Identities = 59/222 (26%), Positives = 118/222 (53%), Gaps = 10/222 (4%)

Query: 1   MAIQ--NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA 58
           M+I+  N+SKRF +   A++ ++++    ++ + LG +G+GKTT + ++ G+    SGT 
Sbjct: 1   MSIEVRNVSKRFGDFV-ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59

Query: 59  KIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIV 118
                D  TD+    R++G   Q+ ALF  +TV +++ F  ++K   +   + EI   + 
Sbjct: 60  LFGGEDA-TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVH 118

Query: 119 DLGIPHKRTSLAN----TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI--W 172
           +L    +   LA+     LSGG ++++++A A     + ++LDEP   +D   R+ +  W
Sbjct: 119 ELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRW 178

Query: 173 ELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
              +  +   T +  TH  +EA  + DR+ ++  G+++  G+
Sbjct: 179 LRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 85.5 bits (212), Expect = 7e-20
 Identities = 59/226 (26%), Positives = 112/226 (49%), Gaps = 23/226 (10%)

Query: 3   IQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA 58
           + N +K F  G    K A+NGL++   E    + +G NGAGK+T ++ + G L  +SG  
Sbjct: 4   LSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQI 63

Query: 59  KIYNHDIRTDMTTIRRSLGVCPQYN----ALFDKLTVEEHM----------WFYSQLKQV 104
            I   D+ T  +  +R+  +   +         +LT+EE++             S L + 
Sbjct: 64  LIDGVDV-TKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNER 122

Query: 105 PKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD 164
            +   +  ++   + LG+ ++ +     LSGG ++ LS+ MA +   + ++LDE T+ +D
Sbjct: 123 RRSSFRERLA--RLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALD 180

Query: 165 PYSRRSIWELLIKY--KKGRTVILTTHYMDEADLLGDRIAIIAAGK 208
           P +   + EL  K   +   T ++ TH M++A   G+R+ ++ +GK
Sbjct: 181 PKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGK 226

Length = 263

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 87.1 bits (216), Expect = 7e-20
 Identities = 62/217 (28%), Positives = 114/217 (52%), Gaps = 23/217 (10%)

Query: 15  LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD-----IRTDM 69
           L V+  +++  E +I   +G +G+GK+T +  + G+ PVS G+  + + D        D 
Sbjct: 38  LGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDA 97

Query: 70  TTIRR----SLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK----DLA--QLEISNMIVD 119
            T+RR     + +  Q  AL    TVEE++ F  +++ +PK         QLE+      
Sbjct: 98  ATLRRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLEL------ 151

Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
           +G+          LSGGMQ+++ +A AF   +  +++DEP S +DP  R  + + L++ +
Sbjct: 152 VGLAQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQ 211

Query: 180 K--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
               +T++  +H +DEA  +G+RIAI+  G++   G+
Sbjct: 212 SKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGT 248

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 87.8 bits (218), Expect = 8e-20
 Identities = 52/215 (24%), Positives = 110/215 (51%), Gaps = 9/215 (4%)

Query: 2   AIQNLSKRFPNGK-LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
            ++N+S  +P  +  A+   N+   + +  + LG +G+GK+T + +L G      G+  +
Sbjct: 338 ELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITL 397

Query: 61  YNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ---LKQVPKDLAQLEISNM 116
              +I + D   +R ++ V  Q   LF   T+ +++   +     +++   L Q+ +  +
Sbjct: 398 NGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLANPDASDEELWAALQQVGLEKL 456

Query: 117 IVDLGIP-HKRTSLAN-TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
           +       +         LSGG +R+L++A A +  +   +LDEPT G+DP + R +  L
Sbjct: 457 LESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLAL 516

Query: 175 LIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           L ++ +G+T+++ TH +   + + DRI ++  GK+
Sbjct: 517 LFEHAEGKTLLMVTHRLRGLERM-DRIIVLDNGKI 550

Length = 573

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 85.2 bits (211), Expect = 1e-19
 Identities = 64/236 (27%), Positives = 118/236 (50%), Gaps = 27/236 (11%)

Query: 16  AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-----DMT 70
           A+  +N+   +   T+F+GH G+GK+T + +L G+   + G+ ++ +  I +     D+ 
Sbjct: 22  ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81

Query: 71  TIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTS 128
            IR+ +G+  Q+  + LF++ TV + + F  Q   V ++ A+      +  +GI     S
Sbjct: 82  QIRKKVGLVFQFPESQLFEE-TVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE---S 137

Query: 129 LANT----LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK-YKKGRT 183
           L       LSGG  R++++A       + ++LDEPT+G+DP  R+ +  L  K ++ G T
Sbjct: 138 LFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMT 197

Query: 184 VILTTHYMDEADLLGDRIAIIAAGKLQCCG--SSVFLKNSFARGYYLSLDMKSAQL 237
           ++L TH MD+     D + ++  GKL   G    +F    F         ++  QL
Sbjct: 198 IVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQDVDF---------LEEKQL 244

Length = 280

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 84.4 bits (210), Expect = 1e-19
 Identities = 59/225 (26%), Positives = 103/225 (45%), Gaps = 18/225 (8%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
            +NLS R   G+  ++ +++     ++ + LG NGAGK+T +  L G L   SG  ++  
Sbjct: 5   ARNLSVRL-GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNG 63

Query: 63  HDIRTDMTTIR--RSLGVCPQYNAL-FDKLTVEE--HMWFYSQLKQVPKDLAQLEISNMI 117
             +  D +     R   V PQ+++L F   TVEE   M           +   L ++  +
Sbjct: 64  RPL-ADWSPAELARRRAVLPQHSSLSFP-FTVEEVVAMGRAP-HGLSRAEDDAL-VAAAL 119

Query: 118 VDLGIPHKRTSLANTLSGGMQRKLSVAMAFI------GGSRTVILDEPTSGVDPYSRRSI 171
             + + H        LSGG Q+++ +A          G  R ++LDEPTS +D   +  +
Sbjct: 120 AQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHV 179

Query: 172 WELLIKY--KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
             L  +   ++G  VI+  H ++ A    DRI ++  G+L   G+
Sbjct: 180 LRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGT 224

Length = 258

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 85.9 bits (213), Expect = 1e-19
 Identities = 56/221 (25%), Positives = 113/221 (51%), Gaps = 13/221 (5%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           I N+ KRF     A++ ++++    ++ + LG +GAGK+T + ++ G+    +G     N
Sbjct: 5   INNVKKRFGAFG-ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI-RLN 62

Query: 63  HDIRTDMTTIR---RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
             +  D++ +    R +G   Q+ ALF  +TV +++ F  ++++     A  EI   + +
Sbjct: 63  GRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEA--EIRARVEE 120

Query: 120 LGIPHKRTSLANT----LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI--WE 173
           L    +   LA+     LSGG ++++++A A     + ++LDEP   +D   R+ +  W 
Sbjct: 121 LLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWL 180

Query: 174 LLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
             +  + G T +  TH  +EA  L DR+ ++  G+++  G 
Sbjct: 181 RKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGP 221

Length = 345

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 85.9 bits (213), Expect = 2e-19
 Identities = 57/216 (26%), Positives = 112/216 (51%), Gaps = 4/216 (1%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           ++I N+ KRF     A+  ++++  + +    LG +G GKTT + ++ G+   ++GT   
Sbjct: 5   LSIDNIRKRF-GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQ 63

Query: 61  YNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
              DI T +   +R  G+  Q  ALF  LTV +++ +  + + + +      ++ ++  +
Sbjct: 64  GGRDI-TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV 122

Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI-WELL-IKY 178
           G+P         LSGG Q+++++A A       ++LDEP S +D   R  +  E+  ++ 
Sbjct: 123 GLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR 182

Query: 179 KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           + G T I+ TH  +EA  + DRI ++  G ++  G+
Sbjct: 183 RLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGT 218

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 85.2 bits (211), Expect = 2e-19
 Identities = 58/187 (31%), Positives = 99/187 (52%), Gaps = 7/187 (3%)

Query: 33  LGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE 92
           LG +G GKTT + +L G     SG+  +   D+ T++    R + +  Q  ALF  +TVE
Sbjct: 2   LGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV-TNVPPHLRHINMVFQSYALFPHMTVE 60

Query: 93  EHMWFYSQLKQVPKDLAQLEISNMI--VDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGG 150
           E++ F  ++++VP+   +  +   +  V L     R    + LSGG Q+++++A A +  
Sbjct: 61  ENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRK--PHQLSGGQQQRVALARALVFK 118

Query: 151 SRTVILDEPTSGVDPYSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGK 208
            + ++LDEP S +D   R  +   L  I+ + G T +  TH  +EA  + DRIAI+  GK
Sbjct: 119 PKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGK 178

Query: 209 LQCCGSS 215
           +   G+ 
Sbjct: 179 IAQIGTP 185

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 83.7 bits (208), Expect = 2e-19
 Identities = 57/221 (25%), Positives = 112/221 (50%), Gaps = 14/221 (6%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML-PVSS---- 55
           + +++L+  +   K A+  +N++  ++++T+ +G +G GK+T +  L  M   +      
Sbjct: 8   IEVRDLNL-YYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVE 66

Query: 56  GTAKIYNHDI---RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQL 111
           G   +   +I   + D+  +RR +G+  Q    F   ++ +++ +  +L  +  K+L ++
Sbjct: 67  GEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPM-SIYDNVAYGLRLHGIKDKELDEI 125

Query: 112 -EISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR 168
            E S     L   +  +    A  LSGG Q++L +A A       +++DEPTS +DP S 
Sbjct: 126 VESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPIST 185

Query: 169 RSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
             I EL+ + KK  T+++ TH M +A  + D  A    G+L
Sbjct: 186 LKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGEL 226

Length = 253

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 86.2 bits (214), Expect = 3e-19
 Identities = 46/196 (23%), Positives = 95/196 (48%), Gaps = 13/196 (6%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
              +S  +P  + A+  ++      +  + +G +GAGK+T +++L+G +  + G+  +  
Sbjct: 324 FSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNG 383

Query: 63  HDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFY------SQLKQVPKDLAQLEISN 115
             +   D  + R  +   PQ+  LF   T+ E++         +++++    L +  +  
Sbjct: 384 VPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARPDASDAEIREA---LERAGLDE 439

Query: 116 MIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
            +  L  G+          LSGG  ++L++A AF+  +  ++LDEPT+ +D  +   + E
Sbjct: 440 FVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLE 499

Query: 174 LLIKYKKGRTVILTTH 189
            L    +GRTV+L TH
Sbjct: 500 ALRALAQGRTVLLVTH 515

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 83.7 bits (207), Expect = 3e-19
 Identities = 54/208 (25%), Positives = 105/208 (50%), Gaps = 7/208 (3%)

Query: 3   IQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           + +LS  +    + A+  +++     ++   LG +G GKTT ++++ G +  S G+ ++ 
Sbjct: 6   VSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQL- 64

Query: 62  NHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG 121
            +  R +     R  GV  Q  AL   L V +++ F  QL+ + K   +     M+  +G
Sbjct: 65  -NGRRIEGPGAER--GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVG 121

Query: 122 IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK- 180
           +          LSGGM++++ +A A     + ++LDEP   +D  +R  + ELL+   + 
Sbjct: 122 LEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQE 181

Query: 181 -GRTVILTTHYMDEADLLGDRIAIIAAG 207
            G+ V+L TH ++EA  L  R+ +++ G
Sbjct: 182 TGKQVLLITHDIEEALFLATRLVVLSPG 209

Length = 259

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 82.6 bits (205), Expect = 4e-19
 Identities = 58/227 (25%), Positives = 106/227 (46%), Gaps = 39/227 (17%)

Query: 5   NLSKRFPNGK-LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
           N+S  +PN +  A++ +++     +  + +G  G+GK+T + +L G+   +SG+  +   
Sbjct: 7   NVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGT 66

Query: 64  DIRT-DMTTIRRSLGVCPQYNALF-----DKLTVEEHMWFYSQLKQVPKDLAQLEISNMI 117
           DIR  D   +RR++G  PQ   LF     D +T+            +  D   L  + + 
Sbjct: 67  DIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLG---------APLADDERILRAAELA 117

Query: 118 VDLGIPHKRTSLANT---------------LSGGMQRKLSVAMAFIGGSRTVILDEPTSG 162
              G+    T   N                LSGG ++ +++A A +     ++LDEPTS 
Sbjct: 118 ---GV----TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSA 170

Query: 163 VDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           +D  S   + E L +    +T+I+ TH     DL+ DRI ++ +G++
Sbjct: 171 MDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLV-DRIIVMDSGRI 216

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 84.9 bits (210), Expect = 5e-19
 Identities = 67/216 (31%), Positives = 121/216 (56%), Gaps = 16/216 (7%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           + I+NL+K F +G+ AV+ +++  Y+ +I + LG +G GK+T + ML G    ++G   +
Sbjct: 20  LEIRNLTKSF-DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIML 78

Query: 61  YNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD- 119
              D+ + +   +R + +  Q  ALF  +TVE+++ F   LKQ    L + EI++ + + 
Sbjct: 79  DGVDL-SHVPPYQRPINMMFQSYALFPHMTVEQNIAF--GLKQ--DKLPKAEIASRVNEM 133

Query: 120 LGIPH-----KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR-RSIWE 173
           LG+ H     KR    + LSGG ++++++A +     + ++LDEP   +D   R R   E
Sbjct: 134 LGLVHMQEFAKRKP--HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLE 191

Query: 174 LL-IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGK 208
           ++ I  + G T ++ TH  +EA  +  RIAI+  GK
Sbjct: 192 VVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGK 227

Length = 377

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 82.3 bits (204), Expect = 6e-19
 Identities = 53/193 (27%), Positives = 89/193 (46%), Gaps = 7/193 (3%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
            +N++  +   K  +  +N +    +  + +G  GAGKTT I++LM       G   I  
Sbjct: 5   FENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDG 64

Query: 63  HDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWF---YSQLKQVPKDLAQLEISNMIV 118
            DIR     ++R  +GV  Q   LF   T+ E++      +  ++V +   +    + I+
Sbjct: 65  IDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIM 123

Query: 119 DL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI 176
            L  G           LS G ++ L++A A +   + +ILDE TS +D  + + I E L 
Sbjct: 124 KLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALE 183

Query: 177 KYKKGRTVILTTH 189
           K  KGRT I+  H
Sbjct: 184 KLMKGRTSIIIAH 196

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 81.8 bits (203), Expect = 7e-19
 Identities = 56/218 (25%), Positives = 111/218 (50%), Gaps = 18/218 (8%)

Query: 3   IQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           I+NL K F  G   V  G+++   + ++   +G +G+GK+T +  +  +    SGT  I 
Sbjct: 3   IKNLHKSF--GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60

Query: 62  NHDI---RTDMTTIRRSLG-VCPQYNALFDKLTVEEH-----MWFYSQLKQVPKDLAQLE 112
              +   + ++  +R+ +G V  Q+N LF  LTV E+     +     +K + K  A+  
Sbjct: 61  GLKLTDDKKNINELRQKVGMVFQQFN-LFPHLTVLENITLAPIK----VKGMSKAEAEER 115

Query: 113 ISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW 172
              ++  +G+  K  +    LSGG Q+++++A A     + ++ DEPTS +DP     + 
Sbjct: 116 ALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVL 175

Query: 173 ELLIKY-KKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           +++    ++G T+++ TH M  A  + DR+  +  G++
Sbjct: 176 DVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 82.9 bits (204), Expect = 8e-19
 Identities = 62/234 (26%), Positives = 120/234 (51%), Gaps = 15/234 (6%)

Query: 11  PNGKLAVNGL---NVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI-- 65
           PN   A   L   ++   +   T+ +GH G+GK+T +  L G+L  + G   + +  +  
Sbjct: 13  PNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSS 72

Query: 66  ---RTDMTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
              + ++  +R+ +GV  Q+  + LF++ TV + + F  Q   +PK+ A+   +  +  +
Sbjct: 73  TSKQKEIKPVRKKVGVVFQFPESQLFEE-TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMV 131

Query: 121 GIPHKRTSLAN-TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK-Y 178
           G+  +    +   LSGG  R++++A         ++LDEPT+G+DP +R  + +L    +
Sbjct: 132 GLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIH 191

Query: 179 KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG--SSVFLKNSFARGYYLSL 230
           + G+TV+L TH MD+     D + ++  G +  CG  S VF +  F + + L +
Sbjct: 192 QSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGV 245

Length = 288

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 83.0 bits (205), Expect = 1e-18
 Identities = 55/238 (23%), Positives = 106/238 (44%), Gaps = 24/238 (10%)

Query: 1   MAIQNLSKRF----PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG 56
           + ++NL   F     N  +A+N ++  F +++I   +G++G+GK+T ++   G++    G
Sbjct: 22  LRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYG 81

Query: 57  TAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNM 116
           T ++ +  I               +    F +L     M F     Q+ KD  + +I   
Sbjct: 82  TIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFG 141

Query: 117 IVDLGIP----HKRTS-------LANT--------LSGGMQRKLSVAMAFIGGSRTVILD 157
            V LG+      K          L ++        LSGG +R++++A         +I D
Sbjct: 142 PVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFD 201

Query: 158 EPTSGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           EPT+G+DP     + +L++  K   +TV + TH M+    + D + ++  GK+   G+
Sbjct: 202 EPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGT 259

Length = 320

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 81.7 bits (202), Expect = 2e-18
 Identities = 52/199 (26%), Positives = 100/199 (50%), Gaps = 5/199 (2%)

Query: 15  LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIR 73
             +  ++ N  + Q TS +GHNG+GK+T   +++G+  V SG     N  I   +   +R
Sbjct: 23  FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLR 82

Query: 74  RSLGVCPQY-NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANT 132
           + +G+  Q  +  F    V+  + F  +   VP D     +S  +  + +  +     N 
Sbjct: 83  KHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNA 142

Query: 133 LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKGRTVILTTHY 190
           LSGG ++++++A         +ILDE TS +DP +R+++ +L+  +K +   T+I  TH 
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202

Query: 191 MDEADLLGDRIAIIAAGKL 209
           + EA +  D + ++  G +
Sbjct: 203 LSEA-MEADHVIVMNKGTV 220

Length = 269

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 81.1 bits (201), Expect = 2e-18
 Identities = 52/224 (23%), Positives = 100/224 (44%), Gaps = 15/224 (6%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           ++ LS  F +G  A+N L++     ++   +G NGAGKTT + ++ G      G+     
Sbjct: 5   LEGLSVSF-DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGG 63

Query: 63  HDI-RTDMTTIRRSLGVCPQYNA--LFDKLTVEEHM---------WFYSQLKQVPKDLAQ 110
            D+       I R  G+  ++    +F+ LTV E++          F S   ++  +   
Sbjct: 64  TDLTGLPEHQIAR-AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKD 122

Query: 111 LEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
             I  ++  +G+  +   LA  LS G ++ L + M  +   + ++LDEP +G+       
Sbjct: 123 -RIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEK 181

Query: 171 IWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
             ELL       +V++  H M+    + D++ ++  G +   GS
Sbjct: 182 TAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGS 225

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 82.8 bits (205), Expect = 3e-18
 Identities = 52/202 (25%), Positives = 98/202 (48%), Gaps = 25/202 (12%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           +++LS  +P     ++G++++    +  + LG +G+GK+T ++ L G+L    G   +  
Sbjct: 337 LRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDG 396

Query: 63  HDIRT-DMTTIRRSLGVCPQYNALFDKLTV------------EEHMWFYSQLKQVPKDLA 109
             + + D   +RR + VC Q   LFD  TV            +E +W           L 
Sbjct: 397 VPVSSLDQDEVRRRVSVCAQDAHLFDT-TVRENLRLARPDATDEELW---------AALE 446

Query: 110 QLEISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS 167
           ++ +++ +  L  G+          LSGG +++L++A A +  +  ++LDEPT  +D  +
Sbjct: 447 RVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAET 506

Query: 168 RRSIWELLIKYKKGRTVILTTH 189
              + E L+    GRTV+L TH
Sbjct: 507 ADELLEDLLAALSGRTVVLITH 528

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 80.1 bits (198), Expect = 5e-18
 Identities = 55/224 (24%), Positives = 99/224 (44%), Gaps = 15/224 (6%)

Query: 4   QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
           +NLS     G+  ++G++++    ++ + LG NGAGK+T +  L G L   SG   +   
Sbjct: 5   ENLSYSL-AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGV 63

Query: 64  DIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWF----YSQLKQVPKDLAQLEISNMIV 118
            + +     + R   V PQ ++L    TV+E +      +   ++  +D      +    
Sbjct: 64  PLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAAT 123

Query: 119 DLGIPHKRTSLANTLSGGMQRKLSVAMAF------IGGSRTVILDEPTSGVDPYSRRSIW 172
           DL           TLSGG Q+++ +A         +   R + LDEPTS +D   +    
Sbjct: 124 DLS--GLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTL 181

Query: 173 ELLIKY-KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 215
            L  +  ++G  V+   H ++ A    DRI ++  G++   GS 
Sbjct: 182 RLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSP 225

Length = 259

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 79.4 bits (196), Expect = 7e-18
 Identities = 52/217 (23%), Positives = 99/217 (45%), Gaps = 19/217 (8%)

Query: 3   IQNLSKRF----PNGKL--AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG 56
           +++LSK F      G     +  +++     +  +  G +GAGK+T +  L       SG
Sbjct: 4   VEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSG 63

Query: 57  TAKIYNHDIRTDMTTI---------RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD 107
              + +     D+            R+++G   Q+  +  +++  E +      + VP++
Sbjct: 64  RILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPRE 123

Query: 108 LAQLEISNMIVDLGIPHKRTSLA-NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
            A+     ++  L IP +   L   T SGG Q+++++A  FI     ++LDEPT+ +D  
Sbjct: 124 AARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAA 183

Query: 167 SRRSIWELLIKYKKGRTVILTTHYMDEA--DLLGDRI 201
           +R+ + E LI   K R   L   + DE   +L+ DR+
Sbjct: 184 NRQVVVE-LIAEAKARGAALIGIFHDEEVRELVADRV 219

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 78.9 bits (195), Expect = 9e-18
 Identities = 56/222 (25%), Positives = 114/222 (51%), Gaps = 19/222 (8%)

Query: 2   AIQNLSKRFPNGKL---AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA 58
           +I+NL+  + +G L    +  +N+     +I    G +G+GKTT ++++ G+  V  G+ 
Sbjct: 3   SIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSL 62

Query: 59  KIYNHDI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ--VPKDLAQLE 112
           K+   ++      ++  +RR++G   Q + L   LT  +++    +L+     ++  +  
Sbjct: 63  KVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERA 122

Query: 113 ISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW 172
            + M+  +G+        + LSGG ++++++A A +   + V+ DEPT+ +D  S R + 
Sbjct: 123 RA-MLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVV 181

Query: 173 ELLIKYKK--GRTVILTTH---YMDEADLLGDRIAIIAAGKL 209
           EL+ K  +  G T+++ TH    +D A    DRI  +  GKL
Sbjct: 182 ELMQKLAREQGCTILIVTHDNRILDVA----DRIVHMEDGKL 219

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 79.3 bits (196), Expect = 9e-18
 Identities = 50/233 (21%), Positives = 101/233 (43%), Gaps = 20/233 (8%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           +  +S  F  G  A+N L+ +    ++   +G NGAGKTT + ++ G      G      
Sbjct: 8   LDGVSVSF-GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDG 66

Query: 63  HDIRTDMTTIRRS-LGVCPQYNA--LFDKLTVEEHM----------W--FYSQLKQVPKD 107
               T +   R +  G+  ++    +F+ LTV E++          +   +++L+   + 
Sbjct: 67  DTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERR 126

Query: 108 LAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS 167
                I  ++  +G+  +R  LA  LS G ++ L + M      + ++LDEP +G+    
Sbjct: 127 ----RIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAE 182

Query: 168 RRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220
                ELL       ++++  H M     + D++ ++  G +   GS   ++N
Sbjct: 183 TEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQN 235

Length = 249

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 79.3 bits (196), Expect = 1e-17
 Identities = 49/213 (23%), Positives = 90/213 (42%), Gaps = 16/213 (7%)

Query: 12  NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI-RTDMT 70
           NGK  +  L+      +  + +G NGAGKTT +S+L G  P SSG   +      + +  
Sbjct: 42  NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETI 101

Query: 71  -TIRRSLGVCPQYNALFDKLTVEEHM-------WFYSQ--LKQVPKDLAQLEISNMIVDL 120
             +R+ +G+    + L ++  V E +       +F S    ++            ++  L
Sbjct: 102 FELRKRIGLVS--SELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELL 159

Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-- 178
           G  H       +LS G QR++ +A A +     +ILDEP  G+D  +R  +   L +   
Sbjct: 160 GAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAA 219

Query: 179 -KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
                 ++  TH+ +E         ++  G++ 
Sbjct: 220 SPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252

Length = 257

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 78.3 bits (193), Expect = 1e-17
 Identities = 50/194 (25%), Positives = 98/194 (50%), Gaps = 7/194 (3%)

Query: 20  LNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC 79
            ++ F + +IT+ +G +G+GK+T ++++ G     SG   I   D+ T      R + + 
Sbjct: 17  FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDV-TAAPPADRPVSML 75

Query: 80  PQYNALFDKLTVEEH--MWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGM 137
            Q N LF  LTVE++  +     LK   +D  +  I   +  +G+      L   LSGG 
Sbjct: 76  FQENNLFAHLTVEQNVGLGLSPGLKLTAED--RQAIEVALARVGLAGLEKRLPGELSGGE 133

Query: 138 QRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY--KKGRTVILTTHYMDEAD 195
           ++++++A   +     ++LDEP + +DP  R  + +L++    +   TV++ TH  ++A 
Sbjct: 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAK 193

Query: 196 LLGDRIAIIAAGKL 209
            L  R+  +  G++
Sbjct: 194 RLAQRVVFLDNGRI 207

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 80.8 bits (199), Expect = 1e-17
 Identities = 62/240 (25%), Positives = 121/240 (50%), Gaps = 12/240 (5%)

Query: 15  LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR----TDMT 70
           L V   ++   E +I   +G +G+GK+T + +L  ++  + G   I   DI      ++ 
Sbjct: 42  LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELR 101

Query: 71  TIRRS-LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSL 129
            +RR  + +  Q  AL   +TV ++  F  +L  +  +  + +  + +  +G+ +   S 
Sbjct: 102 EVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSY 161

Query: 130 ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY--KKGRTVILT 187
            + LSGGM++++ +A A       +++DE  S +DP  R  + + L+K   K  RT++  
Sbjct: 162 PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFI 221

Query: 188 THYMDEADLLGDRIAIIAAGKLQCCGSSVFL----KNSFARGYYLSLDMKSAQLQAEDIG 243
           +H +DEA  +GDRIAI+  G++   G+   +     N + R ++  +D+ S    A+DI 
Sbjct: 222 SHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGVDI-SQVFSAKDIA 280

Length = 400

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 79.1 bits (195), Expect = 1e-17
 Identities = 59/233 (25%), Positives = 111/233 (47%), Gaps = 25/233 (10%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM---LPVSSGT 57
           M  + LS  +     A++ +++ F ++Q+T+ +G +G GK+T +  L  M   +P +   
Sbjct: 7   MEARGLSFFY-GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVE 65

Query: 58  AKIY-----NHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK---------- 102
            +I       +D   D+  +RR +G+  Q    F K ++ E++ +  ++           
Sbjct: 66  GEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNGVKDKAYLAE 124

Query: 103 QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSG 162
           +V + L    + + + D     +    A  LSGG Q++L +A A       +++DEP S 
Sbjct: 125 RVERSLRHAALWDEVKD-----RLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASA 179

Query: 163 VDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 215
           +DP + + I EL+ + K   T+I+ TH M +A  + D  A    GKL   G +
Sbjct: 180 LDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPT 232

Length = 253

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 79.5 bits (196), Expect = 1e-17
 Identities = 60/214 (28%), Positives = 103/214 (48%), Gaps = 19/214 (8%)

Query: 11  PNGKLAVNGL-NVNF--YEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT 67
           P   +   GL N++F   E    + +GH G+GK+T +     +L  SSGT  I  + I  
Sbjct: 14  PGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITP 73

Query: 68  D-----MTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
           +     +  +R+ + +  Q+    LF+  TV + + F  +     +D A+ +    +  +
Sbjct: 74  ETGNKNLKKLRKKVSLVFQFPEAQLFEN-TVLKDVEFGPKNFGFSEDEAKEKALKWLKKV 132

Query: 121 GIPHKRTSLANT----LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI 176
           G+      L +     LSGG  R++++A         + LDEP +G+DP  R+ + +L  
Sbjct: 133 GLS---EDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFK 189

Query: 177 KYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
            Y+K G TVIL TH MD+     D + ++  GKL
Sbjct: 190 DYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKL 223

Length = 287

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 78.4 bits (193), Expect = 1e-17
 Identities = 50/192 (26%), Positives = 104/192 (54%), Gaps = 5/192 (2%)

Query: 20  LNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC 79
           LNV   + +I + +G +GAGK+T ++++ G +  +SG+ K+ +    T +   +R + + 
Sbjct: 19  LNVA--DGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH-TGLAPYQRPVSML 75

Query: 80  PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQR 139
            Q N LF  LTV +++              Q ++ +    +GI      L   LSGG ++
Sbjct: 76  FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQ 135

Query: 140 KLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY--KKGRTVILTTHYMDEADLL 197
           ++++A   +  +  ++LDEP S +DP  R  +  L+ +   ++ RT+++ TH++ +A  +
Sbjct: 136 RVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAI 195

Query: 198 GDRIAIIAAGKL 209
             +IA+++ GK+
Sbjct: 196 ASQIAVVSQGKI 207

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 79.0 bits (195), Expect = 2e-17
 Identities = 63/208 (30%), Positives = 107/208 (51%), Gaps = 16/208 (7%)

Query: 12  NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT---- 67
             KLA++ +N+   + +    LG NG+GK+T    +  +L  S G  K+Y   + T    
Sbjct: 21  TEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEG--KVYVDGLDTSDEE 78

Query: 68  DMTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK 125
           ++  IR   G+  Q   N +   + VEE + F  +   +P +  +  +   +  +G+   
Sbjct: 79  NLWDIRNKAGMVFQNPDNQIVATI-VEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEY 137

Query: 126 RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRR----SIWELLIKYKKG 181
           R    + LSGG ++++++A         +I DEPT+ +DP  RR    +I EL  KY  G
Sbjct: 138 RRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKY--G 195

Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGKL 209
            T+IL THYM+EA +  DRI ++ +GK+
Sbjct: 196 ITIILITHYMEEA-VEADRIIVMDSGKV 222

Length = 280

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 78.2 bits (193), Expect = 2e-17
 Identities = 49/199 (24%), Positives = 97/199 (48%), Gaps = 7/199 (3%)

Query: 20  LNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC 79
            ++     +I + LG +GAGK+T ++++ G    +SG   I   D  T      R + + 
Sbjct: 18  FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDH-TASPPAERPVSML 76

Query: 80  PQYNALFDKLTVEEHMWF--YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGM 137
            Q N LF  LTV +++       LK   +   + ++      +G+      L   LSGG 
Sbjct: 77  FQENNLFAHLTVAQNIGLGLSPGLKLNAEQ--REKVEAAAAQVGLAGFLKRLPGELSGGQ 134

Query: 138 QRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY--KKGRTVILTTHYMDEAD 195
           ++++++A   +     ++LDEP S +DP  R  +  L+ +   ++  T+++ TH+ ++A 
Sbjct: 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAA 194

Query: 196 LLGDRIAIIAAGKLQCCGS 214
            + DR+  +  G++   GS
Sbjct: 195 RIADRVVFLDNGRIAAQGS 213

Length = 231

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 79.1 bits (195), Expect = 2e-17
 Identities = 59/234 (25%), Positives = 117/234 (50%), Gaps = 8/234 (3%)

Query: 4   QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
           ++L   +   K A+N +N     +   + +G NGAGK+T      G+L  +SG+  I   
Sbjct: 7   RDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGE 66

Query: 64  DI-RTDMTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
            I + ++  +R+ +G+  Q   + +F   TVE+ + F      + ++     +S+ +  L
Sbjct: 67  PITKENIREVRKFVGLVFQNPDDQIFSP-TVEQDIAFGPINLGLDEETVAHRVSSALHML 125

Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
           G+   R  + + LSGG ++++++A       + ++LDEPT+G+DP   + + + L    +
Sbjct: 126 GLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPE 185

Query: 181 --GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS--SVFLKNSFARGYYLSL 230
             G TVI +TH +D    + D I ++  G++   G+   +FL+       +L L
Sbjct: 186 TYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLARVHLDL 239

Length = 277

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 78.5 bits (193), Expect = 2e-17
 Identities = 58/214 (27%), Positives = 104/214 (48%), Gaps = 26/214 (12%)

Query: 16  AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA----------KIYNHDI 65
           A+N +N+   ++ IT+ +G +G GK+T +  L  M  +  G             IY+++ 
Sbjct: 22  ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF 81

Query: 66  RTDMTTIRRSLGVC-----PQYNALFDKLTVEEHMWFYSQLKQ----VPKDLAQLEISNM 116
             D+  +RR +G+      P   +++D ++    +      K+    V + L +  + N 
Sbjct: 82  --DILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNE 139

Query: 117 IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI 176
           + D     K  + A +LSGG Q++L +A         +++DEPTS +DP S   I EL+I
Sbjct: 140 VKD-----KLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELII 194

Query: 177 KYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
             K+  T+I+ TH M +A  + DR A    G ++
Sbjct: 195 NLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIE 228

Length = 254

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 77.0 bits (190), Expect = 2e-17
 Identities = 50/214 (23%), Positives = 91/214 (42%), Gaps = 45/214 (21%)

Query: 1   MAIQNLSKRFP-NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           ++I N+S  +P   +  +  L++   + +  + LG +G+GK+T + +L G L    G   
Sbjct: 1   LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60

Query: 60  IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
           +    +      +   + V  Q   LFD  T+                           +
Sbjct: 61  LDGVPVSDLEKALSSLISVLNQRPYLFDT-TLRN-------------------------N 94

Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
           LG            SGG +++L++A   +  +  V+LDEPT G+DP + R +  L+ +  
Sbjct: 95  LGRR---------FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL 145

Query: 180 KGRTVILTTHYMDEADLLG----DRIAIIAAGKL 209
           K +T+I  TH+     L G    D+I  +  GK+
Sbjct: 146 KDKTLIWITHH-----LTGIEHMDKILFLENGKI 174

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 78.2 bits (193), Expect = 2e-17
 Identities = 55/209 (26%), Positives = 99/209 (47%), Gaps = 11/209 (5%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           I +L   +  GK A+  +N+     ++   LG +G GKTT ++++ G +P   G+  +  
Sbjct: 4   ISHLYADYG-GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDG 62

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI--VDL 120
                +     R  GV  Q   L     V++++ F  QL  V K         M+  V L
Sbjct: 63  --KPVEGPGAER--GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGL 118

Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK--Y 178
               KR      LSGG ++++ +A A     + ++LDEP   +D ++R  +  LL+K   
Sbjct: 119 EGAEKRYIW--QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQ 176

Query: 179 KKGRTVILTTHYMDEADLLGDRIAIIAAG 207
           + G+ V+L TH ++EA  +   + +++ G
Sbjct: 177 ETGKQVLLITHDIEEAVFMATELVLLSPG 205

Length = 255

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 77.3 bits (191), Expect = 3e-17
 Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 10/176 (5%)

Query: 18  NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLG 77
           + L+      +     G NGAGKTT + +L G+L   +G        I+    +  ++L 
Sbjct: 19  SDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALL 78

Query: 78  VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI--VDL-GIPHKRTSLANTLS 134
                  +  +LT  E++ F+ +            I   +  V L G+          LS
Sbjct: 79  YLGHQPGIKTELTALENLHFWQRFHG---SGNAATIWEALAQVGLAGLEDL---PVGQLS 132

Query: 135 GGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI-KYKKGRTVILTTH 189
            G QR++++A  ++  +   ILDEP + +D      +  L+     +G  V+LTTH
Sbjct: 133 AGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTH 188

Length = 209

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 79.6 bits (197), Expect = 3e-17
 Identities = 61/228 (26%), Positives = 109/228 (47%), Gaps = 32/228 (14%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           ++ +SK F +GK  ++ L++     +  + LG +G GKTT + ++ G     SG   +  
Sbjct: 17  LRGISKSF-DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDG 75

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD-----------LAQL 111
            DI T +    R +    Q  ALF  +TV E++ F  ++++ P             + QL
Sbjct: 76  QDI-THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQL 134

Query: 112 EISNMIVDLG--IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRR 169
           E      +     PH+       LSGG Q+++++A A +   + ++LDE  S +D Y  R
Sbjct: 135 E------EFAQRKPHQ-------LSGGQQQRVAIARAVVNKPKVLLLDESLSALD-YKLR 180

Query: 170 SIWELLIKY---KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
              +  +K    K G T +  TH  +EA  + DRI ++  G+++  G+
Sbjct: 181 KQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGT 228

Length = 375

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 77.5 bits (192), Expect = 3e-17
 Identities = 56/229 (24%), Positives = 103/229 (44%), Gaps = 30/229 (13%)

Query: 3   IQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
            +N+S R+ PN    +  ++ +    +    +G  G+GK++ +  L  ++ +SSG+  I 
Sbjct: 5   FKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILID 64

Query: 62  NHDIRT-DMTTIRRSLGVCPQYNALFDKLTV-----------EEHMWFYSQLKQVPKDLA 109
             DI    +  +R  + + PQ   LF   T+           +E +W    L++V     
Sbjct: 65  GVDISKIGLHDLRSRISIIPQDPVLFSG-TIRSNLDPFGEYSDEELW--QALERV----- 116

Query: 110 QL--EISNMIVDLGIPHKRTSLANTLSGGMQRKL-SVAMAFIGGSRTVILDEPTSGVDPY 166
            L   + ++    G+          LS G QR+L  +A A +  S+ ++LDE T+ VDP 
Sbjct: 117 GLKEFVESL--PGGLDTVVEEGGENLSVG-QRQLLCLARALLRKSKILVLDEATASVDPE 173

Query: 167 SRRSIWELLIKYKKGRTVILTTHYMDE-ADLLGDRIAIIAAGKLQCCGS 214
           +   I + + +  K  TV+   H +D   D   DRI ++  G++    S
Sbjct: 174 TDALIQKTIREAFKDCTVLTIAHRLDTIIDS--DRILVLDKGRVVEFDS 220

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 78.1 bits (192), Expect = 3e-17
 Identities = 56/207 (27%), Positives = 105/207 (50%), Gaps = 14/207 (6%)

Query: 16  AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM---LP--VSSGTAKIYNHDI---RT 67
           A++G++++F E ++T+ +G +G GK+T +  L  M   +     +G  K    +I   + 
Sbjct: 19  ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78

Query: 68  DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIVDLGI-PHK 125
           D+  +R+ +G+  Q    F   +V +++ +  ++  V  K+L    +   +    I    
Sbjct: 79  DLVELRKEVGMVFQQPTPF-PFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET 137

Query: 126 RTSL---ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGR 182
           + +L   A   SGG Q+++ +A A     + V+LDEPTS +DP S   I E L++ K   
Sbjct: 138 KDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQY 197

Query: 183 TVILTTHYMDEADLLGDRIAIIAAGKL 209
           T I+ TH + +A  + D+ A +  G L
Sbjct: 198 TFIMVTHNLQQAGRISDQTAFLMNGDL 224

Length = 251

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 77.6 bits (191), Expect = 3e-17
 Identities = 63/228 (27%), Positives = 119/228 (52%), Gaps = 20/228 (8%)

Query: 13  GKL-AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTT 71
           GK+ A++ ++++  + +I + +G NGAGKTT +  L G    +SG       DI TD  T
Sbjct: 16  GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDI-TDWQT 74

Query: 72  ---IRRSLGVCPQYNALFDKLTVEEHM---WFYSQLKQVPKDLAQLEISNMIVDL--GIP 123
              +R ++ + P+   +F ++TVEE++    F+++  Q  + +        + +L   + 
Sbjct: 75  AKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKW------VYELFPRLH 128

Query: 124 HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGR 182
            +R   A T+SGG Q+ L++  A +   R ++LDEP+ G+ P   + I++ + + + +G 
Sbjct: 129 ERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGM 188

Query: 183 TVILTTHYMDEADLLGDRIAIIAAGK--LQCCGSSVFLKNSFARGYYL 228
           T+ L     ++A  L DR  ++  G   L+  G ++ L N   R  YL
Sbjct: 189 TIFLVEQNANQALKLADRGYVLENGHVVLEDTGDAL-LANEAVRSAYL 235

Length = 237

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 78.3 bits (193), Expect = 4e-17
 Identities = 65/222 (29%), Positives = 117/222 (52%), Gaps = 9/222 (4%)

Query: 3   IQNLSKRFPNGKL-AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML-PVSSGTAKI 60
            +++S  +P+ K  A+N ++ +      T+ +GHNG+GK+T   ++ G+L P  +  +KI
Sbjct: 8   FKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKI 67

Query: 61  YNHDIRTDMTT---IRRSLGVCPQY-NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNM 116
               I     T   IR  +G+  Q  +  F   TV + + F  + + VP+      + ++
Sbjct: 68  TVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDV 127

Query: 117 IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL- 175
           + D+G+     S    LSGG ++++++A       + +ILDE TS +DP  +  I +L+ 
Sbjct: 128 LADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIR 187

Query: 176 -IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV 216
            +K K   TVI  TH +DEA+ + D++ ++  GKL   GS V
Sbjct: 188 KLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPV 228

Length = 282

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 78.1 bits (192), Expect = 5e-17
 Identities = 55/222 (24%), Positives = 109/222 (49%), Gaps = 18/222 (8%)

Query: 7   SKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR 66
           +K+ P    A+N  ++ F ++++T  +G  G+GK+T I +  G++   +G   + ++ I 
Sbjct: 17  AKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIP 76

Query: 67  TDMTTI------RRSLGVC---PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI 117
            ++  I      R+ +G+    P+Y    +  T+E+ + F        K  A  ++  ++
Sbjct: 77  ANLKKIKEVKRLRKEIGLVFQFPEYQLFQE--TIEKDIAFGPVNLGENKQEAYKKVPELL 134

Query: 118 VDLGIPH---KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
             + +P    KR+     LSGG +R++++A        T++LDEPT G+DP        L
Sbjct: 135 KLVQLPEDYVKRSPF--ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINL 192

Query: 175 LIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
             +  K   + +I+ TH MD+   + D + ++  GK+   GS
Sbjct: 193 FERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234

Length = 289

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 77.4 bits (190), Expect = 6e-17
 Identities = 62/213 (29%), Positives = 109/213 (51%), Gaps = 13/213 (6%)

Query: 16  AVNGLNVNFYEDQITSFLGHNGAGKTT---TISMLMGMLPVSSGTAKIY-----NHDIRT 67
           AV  ++++F E+ +T+ +G +G GK+T   +I+ +  ++P +  T KI       +D   
Sbjct: 19  AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78

Query: 68  DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK-QVPKDLAQ--LEISNMIVDL--GI 122
           D  +IRR +G+  Q    F  +++ +++    +L  +V +  A   +E S   V L   +
Sbjct: 79  DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV 138

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGR 182
             +  S A  LSGG Q++L +A         +++DEP S +DP S   I EL+ + K+  
Sbjct: 139 KDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKY 198

Query: 183 TVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 215
           T+I+ TH M +A  + D  A    G L  CG +
Sbjct: 199 TIIIVTHNMQQAARVSDYTAFFYMGDLVECGET 231

Length = 252

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 77.3 bits (190), Expect = 6e-17
 Identities = 53/207 (25%), Positives = 102/207 (49%), Gaps = 14/207 (6%)

Query: 16  AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM---LPVSSGTAKIY--NHDI---RT 67
           A+ G++++F +++IT+ +G +G GK+T +  L  M   +P  + T  +     +I     
Sbjct: 20  ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNE 79

Query: 68  DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL-----KQVPKDLAQLEISNMIVDLGI 122
           D+  +R+ +G+  Q    F   ++ E++ +  +L     K V  +  +  +    +   +
Sbjct: 80  DVVQLRKQVGMVFQQPNPF-PFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV 138

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGR 182
                  A +LSGG Q+++ +A         ++LDEPTS +DP S   I  +L++ +   
Sbjct: 139 KDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQY 198

Query: 183 TVILTTHYMDEADLLGDRIAIIAAGKL 209
           T+IL TH M +A  + D+ A    G L
Sbjct: 199 TIILVTHSMHQASRISDKTAFFLTGNL 225

Length = 252

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 77.5 bits (191), Expect = 7e-17
 Identities = 55/226 (24%), Positives = 112/226 (49%), Gaps = 13/226 (5%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           +++L  R+ +G  A+ GL+++  E   T+ LG NGAGK+T +  L G+     G  K+  
Sbjct: 7   VEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMG 66

Query: 63  HDI-RTDMTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
            ++   +   +R  +G+  Q   + +F   TV + + F      V   L + E+   + +
Sbjct: 67  REVNAENEKWVRSKVGLVFQDPDDQVFSS-TVWDDVAF----GPVNMGLDKDEVERRVEE 121

Query: 120 ----LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
               + +   R      LS G ++++++A         ++LDEP + +DP  + ++ E+L
Sbjct: 122 ALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEIL 181

Query: 176 IK-YKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220
            + + +G+TVI+ TH +D A    D++ ++  G++   G    L +
Sbjct: 182 DRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTD 227

Length = 274

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 78.7 bits (195), Expect = 8e-17
 Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 12/185 (6%)

Query: 37  GAGKTTTISMLMGMLPVSSGTAKIYNH--DIRTDMTTIRRSLGVCP---QYNALFDKLTV 91
           GAG+T     L G  P SSG   +      IR+    I+  +   P   +   L   +++
Sbjct: 295 GAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSI 354

Query: 92  EEHMWF-----YSQLKQVPKDLAQLEISNMIVDLGI-PHKRTSLANTLSGGMQRKLSVAM 145
            E++       +S+   + +   +      I  L I          TLSGG Q+K+ +A 
Sbjct: 355 AENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLAR 414

Query: 146 AFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTHYMDEADLLGDRIAII 204
                 + +ILDEPT G+D  ++  I+ L+ +   +G+ +++ +  + E   L DRI ++
Sbjct: 415 WLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVM 474

Query: 205 AAGKL 209
             G++
Sbjct: 475 REGRI 479

Length = 500

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 77.4 bits (191), Expect = 8e-17
 Identities = 64/224 (28%), Positives = 119/224 (53%), Gaps = 26/224 (11%)

Query: 1   MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           + ++++S R+P+    A+  ++ + YE +  + +GHNG+GK+T   +L G+L   +GT  
Sbjct: 6   IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65

Query: 60  IYNHDIRTDMTT--IRRSLGVCPQY-NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNM 116
           +    + ++ T   +RR +G+  Q  +  F   TV++ + F  +   VP++     +   
Sbjct: 66  V-GGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQA 124

Query: 117 IVDLGI-------PHKRTSLANTLSGGMQRKLSVAMAFIGGSR--TVILDEPTSGVDPYS 167
           +  +G+       PH+       LSGG  +K  VA+A +   +   +ILDE TS +DP  
Sbjct: 125 LRQVGMEDFLNREPHR-------LSGG--QKQRVAIAGVLALQPDIIILDEATSMLDPRG 175

Query: 168 RRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           RR + E +  +K +KG TV+  TH +DEA    DR+ ++  G++
Sbjct: 176 RREVLETVRQLKEQKGITVLSITHDLDEA-AQADRVIVMNKGEI 218

Length = 279

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 77.9 bits (193), Expect = 1e-16
 Identities = 73/223 (32%), Positives = 112/223 (50%), Gaps = 23/223 (10%)

Query: 3   IQNLSKRFPNGKLAVNGL-NVNFY--EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           ++N+SK FP G   ++ L NV+ +    +I   +G +GAGK+T I  +  +   +SG   
Sbjct: 4   LKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVL 63

Query: 60  IYNHDI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISN 115
           +   D+      ++   RR +G+  Q+  L    TV +++    +L   PK     EI  
Sbjct: 64  VDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKA----EIKA 119

Query: 116 MIVDL----GIPHKRTSLANTLSGGM-QRKLSVAMAFIGGSRTVIL--DEPTSGVDPYSR 168
            + +L    G+  K       LSGG  QR   VA+A    S   +L  DE TS +DP + 
Sbjct: 120 RVTELLELVGLSDKADRYPAQLSGGQKQR---VAIARALASNPKVLLCDEATSALDPATT 176

Query: 169 RSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           RSI ELL  I  + G T++L TH MD    + DR+A+I AG+L
Sbjct: 177 RSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRL 219

Length = 343

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 78.2 bits (193), Expect = 1e-16
 Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 23/174 (13%)

Query: 33  LGHNGAGKTTTISMLMGMLP---VSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKL 89
           +G +GAGKTT ++ L    P     SG+  +    I      +R       Q +     L
Sbjct: 57  MGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKE--MRAISAYVQQDDLFIPTL 114

Query: 90  TVEEHMWFYSQLK---QVPKDLAQLEISNMIVDLGIPHKRTSLANT----------LSGG 136
           TV EH+ F + L+   +V K   +  +  ++  LG+       ANT          LSGG
Sbjct: 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGL----RKCANTRIGVPGRVKGLSGG 170

Query: 137 MQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTH 189
            +++L+ A   +     +  DEPTSG+D +   S+ ++L    +KG+T+I T H
Sbjct: 171 ERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIH 224

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 76.2 bits (187), Expect = 2e-16
 Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 13/209 (6%)

Query: 14  KLAVNGLNVNFYEDQITSFLGHNGAGKTT---TISMLMGMLPVSSGTAKIY--NHDI--- 65
           K AV  +N++     + + +G +G GKTT    I+ +  + P +  T +I     DI   
Sbjct: 17  KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGP 76

Query: 66  RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK-----DLAQLEISNMIVDL 120
           R D   +RR +G+  Q    F  ++V +++    +L  +       ++A+  +    +  
Sbjct: 77  RVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWD 136

Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
            +  +  + A  LSGG Q++L +A A       +++DEPTS +DP S   I +L+   KK
Sbjct: 137 EVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK 196

Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
             T+I+ TH M +A  + D  +    G L
Sbjct: 197 VTTIIIVTHNMHQAARVSDTTSFFLVGDL 225

Length = 252

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 75.8 bits (187), Expect = 2e-16
 Identities = 62/231 (26%), Positives = 105/231 (45%), Gaps = 28/231 (12%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           +++  L  RF  G LAVN +N+   E +I S +G NGAGKTT  + L G    + GT  +
Sbjct: 6   LSVSGLMMRF-GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILL 64

Query: 61  YNHDI--RTDMTTIRRSLGVCPQYNALFDKLTVEEHMW----------FYSQLKQVP--- 105
               I         R  +    Q+  LF ++TV E++            +S L + P   
Sbjct: 65  RGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFR 124

Query: 106 -KDLAQLEISNMIVD-LGIPHKRTSLAN----TLSGGMQRKLSVAMAFIGGSRTVILDEP 159
             +   L+ +   ++ +G+       AN     L+ G QR+L +A   +     ++LDEP
Sbjct: 125 RAESEALDRAATWLERVGL----LEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEP 180

Query: 160 TSGVDPYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGK 208
            +G++P   + + EL+ + +     TV+L  H M     + DRI ++  G 
Sbjct: 181 AAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231

Length = 255

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 75.8 bits (186), Expect = 2e-16
 Identities = 60/217 (27%), Positives = 110/217 (50%), Gaps = 30/217 (13%)

Query: 14  KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT----------AKIYNH 63
           K A+N +N+  YE++IT+ +G +G GK+T +  L  M  + S              IY+ 
Sbjct: 17  KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDK 76

Query: 64  DIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP 123
           D+  D+  +R+ +G+  Q    F  +++ +++ +  ++  + KD  +L+    IV+  + 
Sbjct: 77  DV--DVVELRKRVGMVFQKPNPF-PMSIYDNVAYGPRIHGI-KDKKELD---KIVEWAL- 128

Query: 124 HKRTSL-----------ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW 172
            K+ +L           A  LSGG Q++L +A         +++DEPTS +DP S   I 
Sbjct: 129 -KKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIE 187

Query: 173 ELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           +L+++ KK  T+++ TH M +A  + D  A    G L
Sbjct: 188 DLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDL 224

Length = 251

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 77.6 bits (192), Expect = 2e-16
 Identities = 53/240 (22%), Positives = 98/240 (40%), Gaps = 65/240 (27%)

Query: 12  NGKLAVNGLNVNFYEDQITS---------------FLGHNGAGKTTTISMLMGMLPVSSG 56
            G++    ++  +   +  +                +G  G+GK+T + +L+G+   + G
Sbjct: 461 QGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG 520

Query: 57  TAKIYNHDIRT-DMTTIRRSLGVCPQYNALF-----DKLT-----VEEHMWFYSQLKQVP 105
           +  +   DIR  D   +RR++G  PQ   LF     D +       ++            
Sbjct: 521 SVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEI--------- 571

Query: 106 KDLAQLEISNMIVDLGIPHKRTSLANT---------------LSGGMQRK-LSVAMAFIG 149
             L   E++      G+    T                    LSGG QR+ +++A A + 
Sbjct: 572 --LRAAELA------GV----TEFVRRHPDGLDMQIGERGRSLSGG-QRQAVALARALLR 618

Query: 150 GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
               ++LDEPTS +D  S     + L ++  G+T++L TH     DL+ DRI ++  G++
Sbjct: 619 DPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLV-DRIIVMDNGRI 677

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 74.9 bits (184), Expect = 4e-16
 Identities = 55/230 (23%), Positives = 110/230 (47%), Gaps = 31/230 (13%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML-----PVSS 55
           + I++L   F   ++ ++G+N+   ++ IT+ +G +G+GK+T + +   ++        S
Sbjct: 4   IEIRDLKVSFGQVEV-LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVS 62

Query: 56  GTAKIYNHDI-RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL--- 111
           G   +   DI + D+  +RR + +  Q       L++ E++    +L ++ K   +L   
Sbjct: 63  GEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQER 122

Query: 112 ------------EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP 159
                       E+ +    L  P      A  LSGG Q++L +A A       ++ DEP
Sbjct: 123 VRWALEKAQLWDEVKDR---LDAP------AGKLSGGQQQRLCIARALAFQPEVLLADEP 173

Query: 160 TSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           T+ +DP +   I  L ++ KK  T++L TH+  +A  + D +A +  G++
Sbjct: 174 TANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQI 223

Length = 250

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 73.9 bits (182), Expect = 4e-16
 Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 5/157 (3%)

Query: 34  GHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEE 93
           G NG GKTT + +L G+L   SG  +     +        R++        L  +L+  E
Sbjct: 33  GPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALE 92

Query: 94  HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRT 153
           ++ F++ +       AQ  I + +  +G+       A  LS G QR+L++A  ++  +  
Sbjct: 93  NLHFWAAIHGG----AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPL 148

Query: 154 VILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTH 189
            ILDEPT+ +D      +  LL  +  +G  V+LTTH
Sbjct: 149 WILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTH 185

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 74.7 bits (183), Expect = 7e-16
 Identities = 56/197 (28%), Positives = 104/197 (52%), Gaps = 5/197 (2%)

Query: 17  VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MTTIRRS 75
           +NG++ +  + +  S +G NG+GK+TT  ++ G+     G  KI    +  + +  +RR 
Sbjct: 23  LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82

Query: 76  LGVCPQY-NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLS 134
           +G+  Q  +  F   TVE+ + F  + + +P++     +   ++ + +   +T     LS
Sbjct: 83  IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLS 142

Query: 135 GGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKGRTVILTTHYMD 192
           GG +++++VA         +ILDE TS +DP  R+ I  ++  IK K   TV+  TH +D
Sbjct: 143 GGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD 202

Query: 193 EADLLGDRIAIIAAGKL 209
           EA    DRI ++ AG++
Sbjct: 203 EA-ASSDRILVMKAGEI 218

Length = 277

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 74.6 bits (183), Expect = 7e-16
 Identities = 57/221 (25%), Positives = 109/221 (49%), Gaps = 13/221 (5%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTT---TISMLMGMLPVSSGT 57
           + +++LS  +   K AVN ++++  +  +T+ +G +G GK+T   +I+ +  ++P +   
Sbjct: 22  LEVKDLSIYYGE-KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSE 80

Query: 58  AKIYNH-----DIRTDMTTIRRSLGVCPQYNALFDKLTVEE--HMWFYS--QLKQVPKDL 108
            +I        D   ++  +RR +G+  Q    F K       H   Y+  + K V  ++
Sbjct: 81  GEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEI 140

Query: 109 AQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR 168
            +  ++   +   +  +  S A +LSGG Q++L +A         ++LDEP S +DP S 
Sbjct: 141 VEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISN 200

Query: 169 RSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
             I EL+ + K+  ++I+ TH M +A  + DR A    G L
Sbjct: 201 AKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDL 241

Length = 268

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 74.7 bits (184), Expect = 1e-15
 Identities = 61/228 (26%), Positives = 106/228 (46%), Gaps = 40/228 (17%)

Query: 3   IQNLSKRFPNGKL-----AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
           ++N+ K F N KL     A++ ++V   + +  + +G  G+GKTT I  L  +L   +GT
Sbjct: 5   VKNIVKIF-NKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGT 63

Query: 58  AKIYNHDIRTDMTT-------------------------IRRSLGVCPQYN--ALFDKLT 90
            +    D +    T                         IRR +GV  Q+    LF++ T
Sbjct: 64  IEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ-T 122

Query: 91  VEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH---KRTSLANTLSGGMQRKLSVAMAF 147
           +E+ + F      V K+ A+   +  I  +G+     +R+     LSGG +R++++A   
Sbjct: 123 IEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFE--LSGGQKRRVALAGIL 180

Query: 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIK-YKKGRTVILTTHYMDEA 194
                 ++ DEPT+G+DP   + I E+     K+G+T+IL TH +D  
Sbjct: 181 AMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNV 228

Length = 305

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 73.3 bits (180), Expect = 1e-15
 Identities = 53/237 (22%), Positives = 108/237 (45%), Gaps = 11/237 (4%)

Query: 1   MAIQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           +  +++  R+ P+G + ++ +++     ++   +G +G+GK+T   ++       +G   
Sbjct: 1   ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60

Query: 60  IYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISN--- 115
           +  HD+   D   +RR +GV  Q N LF++ ++ +++        + + +   +++    
Sbjct: 61  VDGHDLALADPAWLRRQVGVVLQENVLFNR-SIRDNIALADPGMSMERVIEAAKLAGAHD 119

Query: 116 --MIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
               +  G           LSGG ++++++A A I   R +I DE TS +D  S  +I  
Sbjct: 120 FISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMR 179

Query: 174 LLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSL 230
            +     GRTVI+  H +       DRI ++  G++   GS   L      G Y  L
Sbjct: 180 NMHDICAGRTVIIIAHRL-STVKNADRIIVMEKGRIVEQGSHDELLAE--NGLYAYL 233

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 73.5 bits (180), Expect = 2e-15
 Identities = 59/214 (27%), Positives = 103/214 (48%), Gaps = 16/214 (7%)

Query: 5   NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS-----SGTAK 59
            L K F    +AV   +V   +++IT F+G +G GK+T +  L  M  +       G   
Sbjct: 12  KLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVH 71

Query: 60  IYNHDIR---TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQ-----L 111
               D+     D   +RR +G+  Q    F  +++ +++ F  +L +   DL       L
Sbjct: 72  FLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYKGDLGDRVKHAL 130

Query: 112 EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI 171
           + + +  ++    K + L  +LSGG Q++L +A A       ++LDEP S +DP + R +
Sbjct: 131 QGAALWDEVKDKLKVSGL--SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRV 188

Query: 172 WELLIKYKKGRTVILTTHYMDEADLLGDRIAIIA 205
            EL+++ KK  T+ L TH M +A  + D  A  +
Sbjct: 189 EELMVELKKDYTIALVTHNMQQAIRVADTTAFFS 222

Length = 261

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 52/205 (25%), Positives = 105/205 (51%), Gaps = 8/205 (3%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           ++N+SK+F   K+ ++ LN+   + ++ + +G +G+GK+T ++++  +    SG   +  
Sbjct: 1   LKNISKKF-GDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNG 59

Query: 63  HDIRT-----DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI 117
            +             R  LG   Q  AL +  TVEE++    + K++ K   + +    +
Sbjct: 60  QETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEAL 119

Query: 118 VDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK 177
             +G+  K       LSGG Q+++++A A +     ++ DEPT  +DP +R  + +LL++
Sbjct: 120 EKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE 179

Query: 178 YKK-GRTVILTTHYMDEADLLGDRI 201
               G+T+I+ TH  + A    DR+
Sbjct: 180 LNDEGKTIIIVTHDPEVAK-QADRV 203

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 73.0 bits (179), Expect = 2e-15
 Identities = 61/224 (27%), Positives = 113/224 (50%), Gaps = 23/224 (10%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTT---TISMLMGMLPVSSGTAK 59
           I+N S  +   K AV  + +  +++QIT+ +G +G GKTT   +I+ +   +P      K
Sbjct: 6   IENFSA-YYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGK 64

Query: 60  IYN-----HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEIS 114
           IY      +D + D+T  R+ +G+  Q    F  +++ +++ F  ++  V K   +L   
Sbjct: 65  IYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPF-PMSIYDNVAFGPRIHGV-KSKHKL--- 119

Query: 115 NMIVDLG---------IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDP 165
           + IV+           +  +       LSGG Q++L +A A       ++LDEPTS +DP
Sbjct: 120 DRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDP 179

Query: 166 YSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
            + + I +LL +  +  T+++ TH + +A  + D IA +  G+L
Sbjct: 180 IATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGEL 223

Length = 250

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 73.1 bits (179), Expect = 2e-15
 Identities = 57/211 (27%), Positives = 105/211 (49%), Gaps = 5/211 (2%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           ++N+S  +P+G  A+  +N+   + +    +G NG+GK+T    L G+L    G   +  
Sbjct: 4   LENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSG 63

Query: 63  HDI--RTDMTTIRRSLGVCPQY-NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
            D    + +  IR+ +G+  Q     F   TVEE + F  +   +P    +  +   + +
Sbjct: 64  IDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAE 123

Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK-Y 178
           +G+   R     TLSGG  + +++A         +I DE TS +DP S  ++ E + K +
Sbjct: 124 IGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLH 183

Query: 179 KKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           +KG+T++  TH ++E     DRI ++  GK+
Sbjct: 184 EKGKTIVYITHNLEELH-DADRIIVMDRGKI 213

Length = 274

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 71.8 bits (177), Expect = 3e-15
 Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 9/180 (5%)

Query: 12  NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR-TDMT 70
            G++  +GL+      +     G NG+GKTT + ++ G+LP ++GT K+   DI   D+ 
Sbjct: 13  GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVA 72

Query: 71  TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLA 130
                LG     NA+   LTV E++ F++          +L+I+  +  +G+        
Sbjct: 73  EACHYLG---HRNAMKPALTVAENLEFWAAF----LGGEELDIAAALEAVGLAPLAHLPF 125

Query: 131 NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL-IKYKKGRTVILTTH 189
             LS G +R++++A   +      ILDEPT+ +D  +     EL+     +G  VI  TH
Sbjct: 126 GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATH 185

Length = 207

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 72.3 bits (178), Expect = 3e-15
 Identities = 51/192 (26%), Positives = 97/192 (50%), Gaps = 9/192 (4%)

Query: 5   NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD 64
           N++  +  G+  +  ++      +  + +G +G+GK+T + +L     VSSG+  I   D
Sbjct: 5   NVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQD 64

Query: 65  IRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD--LG 121
           IR   + ++RR++GV PQ   LF+  T+  ++  Y +     +++ +   +  I D  + 
Sbjct: 65  IREVTLDSLRRAIGVVPQDTVLFND-TIGYNI-RYGRPDATDEEVIEAAKAAQIHDKIMR 122

Query: 122 IPHK-RTSLAN---TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK 177
            P    T +      LSGG ++++++A A +     ++LDE TS +D ++ R I   L  
Sbjct: 123 FPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRD 182

Query: 178 YKKGRTVILTTH 189
             KGRT I+  H
Sbjct: 183 VSKGRTTIVIAH 194

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 72.2 bits (178), Expect = 3e-15
 Identities = 49/180 (27%), Positives = 93/180 (51%), Gaps = 11/180 (6%)

Query: 18  NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSL 76
            GL++     +  + +G +G GK+T +S+L      +SG   +   DIR  ++  +R  +
Sbjct: 20  KGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQI 79

Query: 77  GVCPQYNALFDKLTVEEHMWF---YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSL---- 129
           G+  Q   LFD  T+ E++ +    +  ++V +   +  I + I+ L  P    +L    
Sbjct: 80  GLVSQEPVLFDG-TIAENIRYGKPDATDEEVEEAAKKANIHDFIMSL--PDGYDTLVGER 136

Query: 130 ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTH 189
            + LSGG ++++++A A +   + ++LDE TS +D  S + + E L +  KGRT I+  H
Sbjct: 137 GSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAH 196

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 72.7 bits (178), Expect = 3e-15
 Identities = 61/264 (23%), Positives = 120/264 (45%), Gaps = 36/264 (13%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML---PVSSGTAK 59
           ++ L+K F   + A++ +++N +  ++ + LG +G+GK+T +  L G++     +    +
Sbjct: 7   VEKLAKTFNQHQ-ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIE 65

Query: 60  IYNHDIRT------DMTTIRRSLGVCPQYNALFDKLTVEEHM----------------WF 97
           +    ++       D+   R + G   Q   L ++L+V E++                WF
Sbjct: 66  LLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWF 125

Query: 98  YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157
             + KQ             +  +G+ H      +TLSGG Q+++++A A +  ++ ++ D
Sbjct: 126 TREQKQ--------RALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILAD 177

Query: 158 EPTSGVDPYSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 215
           EP + +DP S R + + L  I    G TV++T H +D A    +RI  +  G +   GSS
Sbjct: 178 EPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSS 237

Query: 216 VFLKNSFARGYYLSLDMKSAQLQA 239
               N      Y S++      +A
Sbjct: 238 QQFDNERFDHLYRSINRVEENAKA 261

Length = 262

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 71.6 bits (176), Expect = 4e-15
 Identities = 51/215 (23%), Positives = 108/215 (50%), Gaps = 11/215 (5%)

Query: 5   NLSKRFPNGKLAV---NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           NL KR+  GKL      G++++  + +I + +G +G+GK+T + +L G+   +SG     
Sbjct: 6   NLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFN 65

Query: 62  NHDIRT----DMTTIR-RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNM 116
              +      +   +R + LG   Q++ L    T  E++     + +     A+     M
Sbjct: 66  GQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEM 125

Query: 117 IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI 176
           +  +G+ H+     + LSGG ++++++A A +     V+ DEPT  +D  + + I++L++
Sbjct: 126 LEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLML 185

Query: 177 KYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           +  +    + ++ TH ++ A  L DR+  +  G+L
Sbjct: 186 ELNRELNTSFLVVTHDLELAKKL-DRVLEMKDGQL 219

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 72.2 bits (177), Expect = 4e-15
 Identities = 53/212 (25%), Positives = 105/212 (49%), Gaps = 24/212 (11%)

Query: 17  VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS-----SGTAKIYNHDI---RTD 68
           + G+++   ++ + + +G +G GK+T +     +L ++      G  +++  +I     D
Sbjct: 20  IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVD 79

Query: 69  MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTS 128
              +RR +G+  QY   F  LT+ +++    +L  + K   +L+     V+  +  K+ +
Sbjct: 80  PIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELD---ERVEWAL--KKAA 134

Query: 129 L-----------ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK 177
           L            + LSGG +++L +A A     + +++DEPT+ +DP     I ELL +
Sbjct: 135 LWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE 194

Query: 178 YKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
            KK  T++L TH   +A  + D +A +  GKL
Sbjct: 195 LKKEYTIVLVTHSPAQAARVSDYVAFLYLGKL 226

Length = 253

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 72.4 bits (177), Expect = 4e-15
 Identities = 59/216 (27%), Positives = 108/216 (50%), Gaps = 11/216 (5%)

Query: 10  FPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM---LPVSSGTAKIYNHDIR 66
           F   K A+  +N+   +++IT+ +G +G GK+T +     M   +    G  +I   D++
Sbjct: 11  FYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVK 70

Query: 67  T-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV--PKDLAQLEISNMIVDLG-- 121
             D+  +R+++G+  Q   +F K ++ E++ +  +L  +   KD  +  + + +  +G  
Sbjct: 71  NQDVVALRKNVGMVFQQPNVFVK-SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLF 129

Query: 122 --IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
             +  K    A  LSGG Q++L +A A     + ++LDEPTS +DP S   I ELL +  
Sbjct: 130 EEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS 189

Query: 180 KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 215
              ++I+ TH M +   + D  A    G+L   G S
Sbjct: 190 HNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGES 225

Length = 246

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 72.5 bits (178), Expect = 4e-15
 Identities = 61/219 (27%), Positives = 110/219 (50%), Gaps = 19/219 (8%)

Query: 31  SFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MTTIRRSLGVCPQY-NALFDK 88
           S +GHNG+GK+TT+ ++ G+L   SG   I    +  + +  IR  +G+  Q  +  F  
Sbjct: 37  SIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVG 96

Query: 89  LTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI 148
            TVE+ + F  + K +P +  +  ++  +  +G+   +      LSGG ++++++A A  
Sbjct: 97  ATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVA 156

Query: 149 GGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAA 206
              + +ILDE TS +DP  R  + + +  I+     TVI  TH +DE   L DR+ ++  
Sbjct: 157 MRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKN 215

Query: 207 GKLQCCGSSVFLKNSFARGYYLSLDMKSAQLQAEDIGLD 245
           G+++   S+   +  F+RG  L             +GLD
Sbjct: 216 GQVE---STSTPRELFSRGNDL-----------LQLGLD 240

Length = 279

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 71.4 bits (175), Expect = 5e-15
 Identities = 45/183 (24%), Positives = 86/183 (46%), Gaps = 13/183 (7%)

Query: 34  GHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVE 92
           G +G GK+T + ++  ++  +SGT      D+ T      R+ +  C Q  ALF   TVE
Sbjct: 36  GPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TVE 94

Query: 93  EHMWFYSQL---KQVPKDLAQLEISNMIVDLGIPHKR-TSLANTLSGGMQRKLSVAMAFI 148
           +++ F  Q+   +        L     +    +P    T     LSGG ++++++     
Sbjct: 95  DNLIFPWQIRNRRPDRAAALDL-----LARFALPDSILTKNITELSGGEKQRIALIRNLQ 149

Query: 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKY--KKGRTVILTTHYMDEADLLGDRIAIIAA 206
              + ++LDE TS +D  ++R+I E++ +Y  ++   V+  TH  D+A    D++  +  
Sbjct: 150 FMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQP 209

Query: 207 GKL 209
           G  
Sbjct: 210 GHA 212

Length = 223

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 71.7 bits (176), Expect = 5e-15
 Identities = 53/195 (27%), Positives = 99/195 (50%), Gaps = 8/195 (4%)

Query: 17  VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSL 76
           + G+N+   + +  S +GH+G GK+T ++++ G+   +SG   +    I T+    R   
Sbjct: 1   LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQI-TEPGPDRM-- 57

Query: 77  GVCPQYNALFDKLTVEEHMWFY--SQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLS 134
            V  Q  +L   LTV E++       L  + K   +  +   I  +G+          LS
Sbjct: 58  -VVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLS 116

Query: 135 GGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY--KKGRTVILTTHYMD 192
           GGM++++++A A     + ++LDEP   +D  +R ++ E L++   +   TV++ TH +D
Sbjct: 117 GGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVD 176

Query: 193 EADLLGDRIAIIAAG 207
           EA LL DR+ ++  G
Sbjct: 177 EALLLSDRVVMLTNG 191

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 73.3 bits (181), Expect = 6e-15
 Identities = 65/248 (26%), Positives = 108/248 (43%), Gaps = 34/248 (13%)

Query: 1   MAIQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           + + N+S  +P+    V  GL++     +  + LG  G GK+T + +L        G   
Sbjct: 339 LTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL 398

Query: 60  IYNHDIRT-DMTTIRRSLGVCPQYNALF-----DKLTVEEHMWFYSQLKQVPKDLAQLEI 113
           +    I       +R+++ V  Q   LF     D L +         L +V   L Q+ +
Sbjct: 399 LNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEV---LQQVGL 455

Query: 114 SNMIVD-------LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
             ++ D       LG           LSGG QR+L +A A +  +  ++LDEPT G+D  
Sbjct: 456 EKLLEDDKGLNAWLG------EGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAE 509

Query: 167 SRRSIWELLIKYKKGRTVILTTHYMDEADLLG----DRIAIIAAGKLQCCGSSVFLKNSF 222
           + R I ELL ++ + +TV++ TH      L G    DRI ++  G++   G+   L    
Sbjct: 510 TERQILELLAEHAQNKTVLMITH-----RLTGLEQFDRICVMDNGQIIEQGTHQELLA-- 562

Query: 223 ARGYYLSL 230
            +G Y  L
Sbjct: 563 QQGRYYQL 570

Length = 574

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 73.1 bits (180), Expect = 7e-15
 Identities = 46/209 (22%), Positives = 86/209 (41%), Gaps = 28/209 (13%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           ++NLS  + +  L +  +++     +    +G NGAGK+T + +L G L   SG      
Sbjct: 6   LENLSLAYGDRPL-LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK 64

Query: 63  ---------HDIRTDMTTIRRSL--GVCPQYNAL--FDKLTVEEHMWFYSQLKQVPKDLA 109
                            T+   +  G       L   ++            L ++   L 
Sbjct: 65  GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLE 124

Query: 110 QL-------EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSG 162
           +L            ++ LG P +   ++ +LSGG +R++++A A +     ++LDEPT+ 
Sbjct: 125 ELDGWTLEARAEEALLGLGFPDEDRPVS-SLSGGWRRRVALARALLEEPDLLLLDEPTNH 183

Query: 163 VDPYSRRSIW--ELLIKYKKGRTVILTTH 189
           +D  S    W  + L +Y    TVI+ +H
Sbjct: 184 LDLESIE--WLEDYLKRYP--GTVIVVSH 208

Length = 530

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 71.6 bits (175), Expect = 7e-15
 Identities = 48/219 (21%), Positives = 111/219 (50%), Gaps = 14/219 (6%)

Query: 10  FPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI------YNH 63
           + N K  +  + +    + I   +G +G+GK+T + +L  ++ +     K+      +  
Sbjct: 19  YINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGK 78

Query: 64  DI-RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE--ISNMIVDL 120
           DI + D   +R+ +G+  Q    F  L++ +++ +  +   + K+  +++  +   +  +
Sbjct: 79  DIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGI-KEKREIKKIVEECLRKV 137

Query: 121 GI---PHKR-TSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI 176
           G+    + R  S A+ LSGG Q++L++A A     + +++DEPTS +D  + ++I +L+ 
Sbjct: 138 GLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLIT 197

Query: 177 KYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 215
           + K    +++ +H   +   + D +A +  G+L   GSS
Sbjct: 198 ELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSS 236

Length = 257

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 71.6 bits (175), Expect = 1e-14
 Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 24/212 (11%)

Query: 8   KRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN----- 62
           K F  G LA+  +++     +I +F+G +G GK+T +     M  +  G AK+       
Sbjct: 27  KVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPG-AKVEGRLLYR 85

Query: 63  ----HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL--------KQVPKDLAQ 110
               +D + +   +RR +G+  Q    F K ++ E++ F  +         + V   L +
Sbjct: 86  DRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRR 144

Query: 111 LEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
             I   + D     K       LSGG Q++L +A A       +++DEP S +DP S R 
Sbjct: 145 AAIWEEVKD-----KLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQ 199

Query: 171 IWELLIKYKKGRTVILTTHYMDEADLLGDRIA 202
           + EL ++ K+  T+I+ TH M +A  + D  A
Sbjct: 200 VEELCLELKEQYTIIMVTHNMQQASRVADWTA 231

Length = 274

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 70.4 bits (172), Expect = 2e-14
 Identities = 52/212 (24%), Positives = 104/212 (49%), Gaps = 24/212 (11%)

Query: 16  AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM---LPVS--SGTAKIYNHDIRT--- 67
           A+ G+++   E  + +F+G +G GK+T + +   M   +P +   G  +I   +I     
Sbjct: 18  ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV 77

Query: 68  DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL----------KQVPKDLAQLEISNMI 117
            +  +R+++G+  Q    F K ++ E++ +  ++          ++V + L    + + +
Sbjct: 78  QVDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV 136

Query: 118 VDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK 177
            D     K    A  LSGG Q++L +A A       +++DEP S +DP S   + EL+ +
Sbjct: 137 KD-----KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE 191

Query: 178 YKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
            KK  T+++ TH M +A  + D+ A    G++
Sbjct: 192 LKKDYTIVIVTHNMQQAARVSDKTAFFYMGEM 223

Length = 250

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 70.9 bits (173), Expect = 2e-14
 Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 44/243 (18%)

Query: 14  KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA--------------- 58
           K  ++ LN++   +++T+F+G +G GK+T +  L  +  +  GT+               
Sbjct: 95  KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154

Query: 59  KIYNHDIRTDM-----------TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD 107
           KI + ++RT +            +I  ++   P+ N + D+  +E         K V K 
Sbjct: 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILE---------KIVEKS 205

Query: 108 LAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS 167
           L    + + + D           N LSGG Q++L +A A       +++DEPTS +DP +
Sbjct: 206 LKSAALWDEVKD-----DLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIA 260

Query: 168 RRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS--SVFL--KNSFA 223
              I EL+++ KK  ++I+ TH M +A  + D       G ++  G   ++F+  KN   
Sbjct: 261 TAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPKNKRT 320

Query: 224 RGY 226
           + Y
Sbjct: 321 KDY 323

Length = 329

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 69.7 bits (171), Expect = 3e-14
 Identities = 62/218 (28%), Positives = 102/218 (46%), Gaps = 36/218 (16%)

Query: 16  AVNGLNVNFYEDQITSFLGHNGAGKTTTISML--MGMLPVS---SGTAKIYNHDI---RT 67
           A+  +N++  E+Q+T+ +G +G GK+T +  L  M  L  S    G   +   DI     
Sbjct: 18  ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77

Query: 68  DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-----KDLAQLEISNMIVDLGI 122
           D+  +R+ +G+  Q    F        M  Y  +   P     KD  +L   + IV+  +
Sbjct: 78  DVNQLRKRVGMVFQQPNPFP-------MSIYDNVAYGPRTHGIKDKKKL---DEIVEKSL 127

Query: 123 PHKRTSL-----------ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI 171
             K  +L           A  LSGG Q++L +A A       +++DEPTS +DP S   I
Sbjct: 128 --KGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKI 185

Query: 172 WELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
            EL+ + KK  T+++ TH M +A  + D+ A    G++
Sbjct: 186 EELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEI 223

Length = 250

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 69.1 bits (169), Expect = 5e-14
 Identities = 59/233 (25%), Positives = 100/233 (42%), Gaps = 33/233 (14%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           + +  LSK +  GK     ++ + Y  ++   +G +G+GK+T +  L G L    GTA  
Sbjct: 4   LQVSGLSKSYGGGK-GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATY 62

Query: 61  YNHDIRT-DMTTI----RRSL-----GVCPQYNALFDKLTV-------EEHMWF----YS 99
                   ++  +    RR L     G   Q      ++ V       E  M      Y 
Sbjct: 63  IMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYG 122

Query: 100 QLKQVPKD-LAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158
            ++   +D L ++EI    +D         L    SGGMQ++L +A   +   R V +DE
Sbjct: 123 NIRATAQDWLEEVEIDPTRID--------DLPRAFSGGMQQRLQIARNLVTRPRLVFMDE 174

Query: 159 PTSGVDPYSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           PT G+D   +  + +LL  +    G  VI+ TH +  A LL  R+ ++  G++
Sbjct: 175 PTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRV 227

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 70.5 bits (173), Expect = 6e-14
 Identities = 57/242 (23%), Positives = 116/242 (47%), Gaps = 26/242 (10%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           I ++S  +  G   ++ +++    +  T+ +G +G+GK+T   +L+G     SG   +  
Sbjct: 476 INDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNG 535

Query: 63  HDIRT-DMTTIRRSLGVCPQYNALFD-------------KLTVEEHMWFYSQLKQVPKDL 108
             ++  D  T+R+ +   PQ   +F               ++ +E +W   ++ ++  D 
Sbjct: 536 FSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDE-IWAACEIAEIKDD- 593

Query: 109 AQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR 168
               I NM   LG   + +   +++SGG ++++++A A +  S+ +ILDE TS +D  + 
Sbjct: 594 ----IENM--PLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITE 647

Query: 169 RSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYL 228
           + I   L+  +  +T+I   H +  A    D+I ++  GK+   GS   L +    G+Y 
Sbjct: 648 KKIVNNLLNLQD-KTIIFVAHRLSVAKQS-DKIIVLDHGKIIEQGSHDELLD--RNGFYA 703

Query: 229 SL 230
           SL
Sbjct: 704 SL 705

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 68.4 bits (168), Expect = 7e-14
 Identities = 50/204 (24%), Positives = 96/204 (47%), Gaps = 28/204 (13%)

Query: 3   IQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
            +N++ R+P  G   +  ++++    +  + +G +G+GK+T ++++     V SG   I 
Sbjct: 3   FKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILID 62

Query: 62  NHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD------LAQLE-- 112
            HD+R   + ++RR +G+  Q   LF+  TV E++  Y +     ++       A     
Sbjct: 63  GHDVRDYTLASLRRQIGLVSQDVFLFND-TVAENI-AYGRPGATREEVEEAARAANAHEF 120

Query: 113 ISNM-------IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDP 165
           I  +       I + G+          LSGG ++++++A A +     +ILDE TS +D 
Sbjct: 121 IMELPEGYDTVIGERGV---------KLSGGQRQRIAIARALLKDPPILILDEATSALDT 171

Query: 166 YSRRSIWELLIKYKKGRTVILTTH 189
            S R +   L +  K RT  +  H
Sbjct: 172 ESERLVQAALERLMKNRTTFVIAH 195

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 68.2 bits (167), Expect = 9e-14
 Identities = 54/224 (24%), Positives = 103/224 (45%), Gaps = 19/224 (8%)

Query: 1   MAIQNLSKRFPNGKLAVN---GLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
           + + +LSK    G+  ++   G+ +     +  + +G +G+GK+T +++L G+   SSG 
Sbjct: 7   IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGE 66

Query: 58  AKIYNHDI-------RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQ 110
            ++    +       R  +    R +G   Q   L   LT  E++    +L+      ++
Sbjct: 67  VRLLGQPLHKLDEDARAALR--ARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSR 124

Query: 111 LEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
                ++  +G+  + T     LSGG Q+++++A AF G    +  DEPT  +D  +   
Sbjct: 125 AGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDK 184

Query: 171 IWELLIKYKKGR--TVILTTHYMDEADLLG--DRIAIIAAGKLQ 210
           I +LL    + R  T++L TH  D   L    DR   + +G+L 
Sbjct: 185 IADLLFALNRERGTTLVLVTH--DPQ-LAARCDRQLRLRSGRLV 225

Length = 228

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 68.6 bits (167), Expect = 9e-14
 Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 26/212 (12%)

Query: 17  VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT----------AKIYNHDIR 66
           +  +N++F E QIT+ +G +G GK+T +  L  M  + SG             IY+ ++ 
Sbjct: 20  LKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL- 78

Query: 67  TDMTTIRRSLGVC-----PQYNALFDKLTVEEHMW---FYSQLKQ-VPKDLAQLEISNMI 117
            D+  +R+ +G+      P   ++FD +     M      S+L + V K L Q  + + +
Sbjct: 79  -DVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV 137

Query: 118 VDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK 177
            D      ++ LA  LSGG Q++L +A         +++DEP S +DP S   I EL+ +
Sbjct: 138 KD---NLHKSGLA--LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQE 192

Query: 178 YKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
            K+  T+ + TH M +A    D    +  G L
Sbjct: 193 LKQNYTIAIVTHNMQQAARASDWTGFLLTGDL 224

Length = 251

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 66.9 bits (164), Expect = 1e-13
 Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 42/210 (20%)

Query: 3   IQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           ++N+S R+P  +  V   ++ +    +  + +G +G+GK+T   +++G+L  +SG  ++ 
Sbjct: 3   VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLD 62

Query: 62  NHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
             DI   D   +   +G  PQ + LF   ++ E                           
Sbjct: 63  GADISQWDPNELGDHVGYLPQDDELFSG-SIAE--------------------------- 94

Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
                     N LSGG +++L +A A  G  R ++LDEP S +D    R++ + +   K 
Sbjct: 95  ----------NILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA 144

Query: 181 -GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
            G T I+  H   E     DRI ++  G++
Sbjct: 145 AGATRIVIAHRP-ETLASADRILVLEDGRV 173

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 68.1 bits (166), Expect = 1e-13
 Identities = 51/208 (24%), Positives = 99/208 (47%), Gaps = 13/208 (6%)

Query: 14  KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSS-----GTAKIYNHDIR-- 66
           K A+  +++   ++ +T+ +G +G GK+T I  L  M  +       G   I   DI   
Sbjct: 25  KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84

Query: 67  -TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI--- 122
             D+  +R+++G+  Q    F  +++ +++ +  ++    K      + N +    +   
Sbjct: 85  DVDVVELRKNVGMVFQKPNPF-PMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDE 143

Query: 123 -PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKG 181
              +  S A +LSGG Q++L +A       + ++ DEPTS +DP S   I +L++  KK 
Sbjct: 144 TSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKD 203

Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGKL 209
            T+++ TH M +A  + D       G+L
Sbjct: 204 YTIVIVTHNMQQAARISDYTGFFLMGEL 231

Length = 258

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 67.1 bits (165), Expect = 1e-13
 Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 46/215 (21%)

Query: 13  GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72
               +  +N+   + ++ + +G  G+GK++ +S L+G L   SG+  +            
Sbjct: 17  TSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---------- 66

Query: 73  RRSLGVCPQY----------NALFDKLTVEEHMWFYSQLK--QVPKDLAQLE--ISNMIV 118
             S+    Q           N LF K    +   +   +K   +  DL  L       I 
Sbjct: 67  --SIAYVSQEPWIQNGTIRENILFGK--PFDEERYEKVIKACALEPDLEILPDGDLTEIG 122

Query: 119 DLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI-- 176
           + GI          LSGG ++++S+A A    +   +LD+P S VD +  R I+E  I  
Sbjct: 123 EKGI---------NLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILG 173

Query: 177 KYKKGRTVILTTH---YMDEADLLGDRIAIIAAGK 208
                +T IL TH    +  A    D+I ++  G+
Sbjct: 174 LLLNNKTRILVTHQLQLLPHA----DQIVVLDNGR 204

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 67.9 bits (166), Expect = 1e-13
 Identities = 59/226 (26%), Positives = 109/226 (48%), Gaps = 23/226 (10%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM---LPVSSGT 57
           ++ +NL+  +   K A+  + ++  ++++T+ +G +G GK+T +     M   +P    T
Sbjct: 7   LSTKNLNLWY-GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRIT 65

Query: 58  AKI-YN----HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE 112
             I YN     D   D+  +RR +G+  Q    F K ++ E++ +  ++    K+   L+
Sbjct: 66  GDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE-KNKKTLD 123

Query: 113 ISNMIVDLGIPHK------RTSL---ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGV 163
               IV+  +         +  L   A +LSGG Q++L +A         +++DEP S +
Sbjct: 124 ---TIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSAL 180

Query: 164 DPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           DP +   I +L+   KK  TVI+ TH M +A  + D    +  GKL
Sbjct: 181 DPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKL 226

Length = 253

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 67.9 bits (166), Expect = 2e-13
 Identities = 57/223 (25%), Positives = 112/223 (50%), Gaps = 18/223 (8%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           + ++NL K+F +G+  ++G+++     ++ + +G +G+GKTT +  +  +    +GT ++
Sbjct: 4   IEVKNLVKKF-HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRV 62

Query: 61  YNHDIRTD---------MTTIRRSLGVCPQYNALFDKLTVEEH-MWFYSQLKQVPKDLAQ 110
            +  I T          +  +R+ +G   Q   LF   TV E+ +     +K  PK+ A 
Sbjct: 63  GDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEAT 122

Query: 111 LEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
                ++  +G+  K TS    LSGG Q+++++A A       ++ DEPTS +DP     
Sbjct: 123 ARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDP---EL 179

Query: 171 IWELLIKYK----KGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           + E+L   +    + RT+++ TH M  A  + DR   +  G++
Sbjct: 180 VGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRI 222

Length = 250

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 67.9 bits (166), Expect = 2e-13
 Identities = 56/219 (25%), Positives = 107/219 (48%), Gaps = 31/219 (14%)

Query: 4   QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTI---SMLMGMLPVSSGTAKI 60
           +NL+  + +  LAV  + ++  ++QIT+F+G +G GK+T +   + L  ++P      K+
Sbjct: 14  ENLNVYYGS-FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKV 72

Query: 61  YNH-----DIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL---- 111
             H         D   +RR +G+  Q    F K ++ +++ + +++     D+ +L    
Sbjct: 73  TFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARINGYKGDMDELVERS 131

Query: 112 --------EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGV 163
                   E+ + +   G+         +LSGG Q++L +A A       +++DEP S +
Sbjct: 132 LRQAALWDEVKDKLKQSGL---------SLSGGQQQRLCIARAIAVQPEVILMDEPCSAL 182

Query: 164 DPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIA 202
           DP S   I EL+ + K+  T+I+ TH M +A  + D  A
Sbjct: 183 DPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTA 221

Length = 264

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 67.8 bits (165), Expect = 2e-13
 Identities = 61/223 (27%), Positives = 101/223 (45%), Gaps = 18/223 (8%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG---- 56
           MA  NL+  F  GK  ++ +++ F    +TS +G  G+GKTT +  L  M    SG    
Sbjct: 22  MAAVNLTLGFA-GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYS 80

Query: 57  ------TAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD--- 107
                    I+N+    D+   RR +G+  Q    F    ++  +      K VP+    
Sbjct: 81  GDVLLGGRSIFNY---RDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFR 137

Query: 108 -LAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
            +AQ  ++ + +   +  + +     LSGG Q+ L +A         ++LDEPTS +DP 
Sbjct: 138 GVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPT 197

Query: 167 SRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           +   I E +       TVI+ TH + +A  + DR A+   G+L
Sbjct: 198 TTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRL 240

Length = 276

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 68.8 bits (168), Expect = 3e-13
 Identities = 51/172 (29%), Positives = 96/172 (55%), Gaps = 12/172 (6%)

Query: 28  QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD 87
           +I + LG +G+GK+T ++ L G +  ++ T  I  ++ +     ++R+ G   Q + L+ 
Sbjct: 95  EILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT-GFVTQDDILYP 153

Query: 88  KLTVEEHMWFYSQLKQVPKDLAQLE----ISNMIVDLGIPH-KRTSLANT----LSGGMQ 138
            LTV E + F S L+ +PK L + E      ++I +LG+   + T + N+    +SGG +
Sbjct: 154 HLTVRETLVFCSLLR-LPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGER 212

Query: 139 RKLSVAMAFIGGSRTVILDEPTSGVDPYSR-RSIWELLIKYKKGRTVILTTH 189
           +++S+A   +     +ILDEPTSG+D  +  R +  L    +KG+T++ + H
Sbjct: 213 KRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMH 264

Length = 659

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 67.4 bits (164), Expect = 3e-13
 Identities = 53/222 (23%), Positives = 108/222 (48%), Gaps = 23/222 (10%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTT------TISMLMGMLPVS 54
           + +++LS  +   K A+ G++++ Y +++T+ +G +G GK+T       IS L G + V 
Sbjct: 8   IKVKDLSFYYNTSK-AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVE 66

Query: 55  SGTAKIYNHDI---RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL 111
            G    +  +I   R ++  +RR +G+  Q    F  +++ E++ +  +   +   L Q 
Sbjct: 67  -GVVDFFGQNIYDPRININRLRRQIGMVFQRPNPF-PMSIYENVAYGVR---ISAKLPQA 121

Query: 112 EISNMIVDL--------GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGV 163
           ++  ++            +  K    A  LSGG Q++L +A A     + +++DEP S +
Sbjct: 122 DLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSAL 181

Query: 164 DPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIA 205
           DP +   + EL+   +   T+ + TH M +A  + D  A  +
Sbjct: 182 DPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFS 223

Length = 259

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 55/221 (24%), Positives = 95/221 (42%), Gaps = 18/221 (8%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           M   N  +R  N  L  N          IT+  G +G+GKT+ I+M+ G+     G  ++
Sbjct: 1   MLELNFRQRLGNFALDAN---FTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIEL 57

Query: 61  YNHDIRTDMT------TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEIS 114
            N  +  D          +R +G   Q   LF   TV         L+       + +  
Sbjct: 58  -NGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV------RGNLRYGMWKSMRAQFD 110

Query: 115 NMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
            ++  LGI H       TLSGG ++++++  A +     +++DEP + +D   +R I   
Sbjct: 111 QLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPY 170

Query: 175 LIK-YKKGRTVIL-TTHYMDEADLLGDRIAIIAAGKLQCCG 213
           L +   +    IL  +H +DE   L DR+ ++  GK++  G
Sbjct: 171 LERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASG 211

Length = 352

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 66.8 bits (163), Expect = 3e-13
 Identities = 56/222 (25%), Positives = 114/222 (51%), Gaps = 16/222 (7%)

Query: 2   AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM---LP--VSSG 56
           +++NL+  +   K  +  +N++ Y+ ++T+F+G +G GK+T +     M   +P     G
Sbjct: 7   SVKNLNLWY-GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKG 65

Query: 57  TAKIYNHDI---RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE- 112
              I   D+    T++  +R  +G+  Q    F K ++ +++ +  +L  + K+  +L+ 
Sbjct: 66  ELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDE 124

Query: 113 -ISNMIVDLGI----PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS 167
            +   +  +G+      +    A  LSGG Q++L +A A       +++DEP S +DP +
Sbjct: 125 IVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVA 184

Query: 168 RRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
              I  L+ + KK  T+I+ TH M +A  + DR+A   +G++
Sbjct: 185 TNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRI 226

Length = 251

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 66.6 bits (163), Expect = 4e-13
 Identities = 49/212 (23%), Positives = 99/212 (46%), Gaps = 16/212 (7%)

Query: 16  AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP--VSSGTAKIYNHDIRTDMTTIR 73
            V  LN++    ++ + +G +G+GK+ T   ++G+LP  ++  + +I          +IR
Sbjct: 1   LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIR 60

Query: 74  -RSLGVCPQ-----YNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRT 127
            R +    Q     +N LF   T+  H     +        A+  I   +  +G+P    
Sbjct: 61  GRHIATIMQNPRTAFNPLF---TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEE 117

Query: 128 SL---ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKGR 182
            L      LSGGM +++ +A+A +     +I DEPT+ +D  ++  + +LL  ++   G 
Sbjct: 118 VLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGT 177

Query: 183 TVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
            ++L TH +     + D +A++  G++   G+
Sbjct: 178 GILLITHDLGVVARIADEVAVMDDGRIVERGT 209

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 68.2 bits (167), Expect = 4e-13
 Identities = 56/237 (23%), Positives = 113/237 (47%), Gaps = 16/237 (6%)

Query: 4   QNLSKRFP-NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           +N++ R+P   + A++ +++     +  + +G +G+GK+T ++++       SG   +  
Sbjct: 334 RNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDG 393

Query: 63  HDIRTDMT--TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD--LAQLEISNMI- 117
           HD+  D T  ++RR + +  Q   LF+  T+  ++  Y + +Q  +      L  +    
Sbjct: 394 HDLA-DYTLASLRRQVALVSQDVVLFND-TIANNI-AYGRTEQADRAEIERALAAAYAQD 450

Query: 118 ----VDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
               + LG+          LSGG +++L++A A +  +  +ILDE TS +D  S R +  
Sbjct: 451 FVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQA 510

Query: 174 LLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSL 230
            L +  +GRT ++  H +   +   DRI ++  G++   G+   L      G Y  L
Sbjct: 511 ALERLMQGRTTLVIAHRLSTIE-KADRIVVMDDGRIVERGTHNELLA--RNGLYAQL 564

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 67.7 bits (166), Expect = 4e-13
 Identities = 60/228 (26%), Positives = 107/228 (46%), Gaps = 43/228 (18%)

Query: 14  KLAVNGL------NVNF--YEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI 65
           +L V+ L      +V+F   + +I    G  GAG+T  + +L G LP +SG   +  H++
Sbjct: 257 RLKVDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEV 316

Query: 66  RTDMTTIRRSLGVCPQ--------Y-------NALFDKLTVEEHM------WFYSQLKQV 104
            T            PQ        Y       + L   ++V+E+M      +F      +
Sbjct: 317 VT----------RSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSL 366

Query: 105 PKDLAQLEISNMIVDLGI--PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSG 162
                Q  +S+ I    I  P    ++   LSGG Q+K+++A   +   + +ILDEPT G
Sbjct: 367 KHADEQQAVSDFIRLFNIKTPSMEQAIGL-LSGGNQQKVAIARGLMTRPKVLILDEPTRG 425

Query: 163 VDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           VD  +++ I++L+ ++K  G ++IL +  M E   + DRI ++  G++
Sbjct: 426 VDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRI 473

Length = 501

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 67.4 bits (165), Expect = 4e-13
 Identities = 47/201 (23%), Positives = 89/201 (44%), Gaps = 25/201 (12%)

Query: 29  ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI-------RTDMTTIRRSLGVCPQ 81
           +T+  G +G+GKTT I ++ G+     G  +I  +            +   +R +G   Q
Sbjct: 25  VTAIFGRSGSGKTTLIRLIAGLTRPDEG--EIVLNGRTLFDSRKGIFLPPEKRRIGYVFQ 82

Query: 82  YNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKL 141
              LF  L+V  ++ +   +K+      ++    +I  LGI H    L   LSGG ++++
Sbjct: 83  EARLFPHLSVRGNLRY--GMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRV 140

Query: 142 SVAMAFIGGSRTVILDEPTSGVD--------PYSRRSIWELLIKYKKGRTVILTTHYMDE 193
           ++  A +   R +++DEP + +D        PY  R   E  I       ++  +H + E
Sbjct: 141 AIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIP------ILYVSHSLQE 194

Query: 194 ADLLGDRIAIIAAGKLQCCGS 214
              L DR+ ++  G++   G 
Sbjct: 195 VLRLADRVVVLEDGRVAAAGP 215

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 66.4 bits (162), Expect = 4e-13
 Identities = 52/216 (24%), Positives = 102/216 (47%), Gaps = 11/216 (5%)

Query: 5   NLSKRFPNGKLAVNGL-NVNFY--EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           NL KR+  G +  + L NV+F   E ++ + +G +G+GK+T + +L G+   +SG     
Sbjct: 10  NLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFN 69

Query: 62  NHDIRTDMTTIR-----RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNM 116
              +    +  +     + LG   Q++ L    T  E++     + +            M
Sbjct: 70  GQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEM 129

Query: 117 IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL- 175
           +  +G+ H+     + LSGG ++++++A A +   R V+ DEPT  +D  +  SI++LL 
Sbjct: 130 LAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLG 189

Query: 176 -IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
            +   +G   ++ TH +  A  +  R   +  G+L 
Sbjct: 190 ELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLT 224

Length = 233

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 66.6 bits (163), Expect = 6e-13
 Identities = 59/228 (25%), Positives = 113/228 (49%), Gaps = 27/228 (11%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SS 55
           + ++NL+  F   K A+  +++   ++++T+F+G +G GK+T +     M  +       
Sbjct: 26  LEVRNLN-LFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIE 84

Query: 56  GTAKIYNHDI---RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE 112
           G  ++   +I   + D+  +RR +G+  Q    F K ++ E++ +  +L+ +  +   L+
Sbjct: 85  GEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGI-NNRRVLD 142

Query: 113 ISNMIVDLGIPHKRTSL-----------ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTS 161
                V+  +  +  +L           A  LSGG Q++L +A A       ++LDEPTS
Sbjct: 143 ---EAVERSL--RGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTS 197

Query: 162 GVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
            +DP S   I EL+ + K   T+++ TH M +A  + D  A +  GKL
Sbjct: 198 ALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKL 245

Length = 272

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 66.3 bits (162), Expect = 6e-13
 Identities = 61/215 (28%), Positives = 107/215 (49%), Gaps = 26/215 (12%)

Query: 14  KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM---LPVSSGTAKIYNHDI----- 65
           K A+ G+++ F +++IT+ +G +G+GK+T +  L  M   + ++  T +I    I     
Sbjct: 33  KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRK 92

Query: 66  RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK 125
             ++  +R+ +G+  Q    F K ++ E++ F  +   V KD   L+    IV+  +  K
Sbjct: 93  EINVYEMRKHIGMVFQRPNPFAK-SIYENITFALERAGV-KDKKVLD---EIVETSL--K 145

Query: 126 RTSL-----------ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
           + +L           A TLSGG Q++L +A A       +++DEP S +DP S   + E 
Sbjct: 146 QAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEET 205

Query: 175 LIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           + + KK  T+I+ TH M +A    D  A    G L
Sbjct: 206 MFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDL 240

Length = 267

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 66.2 bits (161), Expect = 6e-13
 Identities = 57/219 (26%), Positives = 107/219 (48%), Gaps = 25/219 (11%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSS-----GT 57
           + NLS  +   K+ + G+++  Y+ ++T+ +G +G GK+T +  L  M  + S     G 
Sbjct: 10  VNNLSFYYDTQKI-LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGR 68

Query: 58  AKIYNHDI---RTDMTTIRRSLG-VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEI 113
            + +N +I   R ++  +RR +  V P+ N LF     +   +    +   PK    LEI
Sbjct: 69  VEFFNQNIYERRVNLNRLRRQVSMVHPKPN-LFPMSVYDNVAYGVKIVGWRPK----LEI 123

Query: 114 SNMI------VDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDP 165
            +++       DL   I HK    A  LSGG Q++L +A A     + +++DEP  G+DP
Sbjct: 124 DDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDP 183

Query: 166 YSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIA 202
            +   +  L+  ++ +   T+++ +H + +   L D  A
Sbjct: 184 IASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTA 222

Length = 261

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 67.1 bits (164), Expect = 8e-13
 Identities = 53/221 (23%), Positives = 103/221 (46%), Gaps = 11/221 (4%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           +  + K F     A+  +N+  Y  +I + LG NGAGK+T + +L G+   + GT  I N
Sbjct: 8   MAGIGKSFG-PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINN 66

Query: 63  HDIRTDMTTIRRSLGVCPQYNAL--FDKLTVEEHMWFYSQLKQ----VP-KDLAQLEI-- 113
            +       +   LG+   Y  L   D+LTV E+++    L +    V   D  ++ +  
Sbjct: 67  INYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRA 126

Query: 114 SNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
           + M++ +G+          LS   ++ L +A   +  ++ +I+DEPTS +       ++ 
Sbjct: 127 AMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFL 186

Query: 174 LLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213
           ++ + +K G  ++  +H + E   + DR  ++  G   C G
Sbjct: 187 IMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227

Length = 510

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 65.8 bits (160), Expect = 9e-13
 Identities = 56/237 (23%), Positives = 112/237 (47%), Gaps = 23/237 (9%)

Query: 2   AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISML------------MG 49
            +  L+  +  G  A+  +N+  +E Q+T+ +G +G GK+T +                G
Sbjct: 18  EVNKLNFYY-GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEG 76

Query: 50  MLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK-DL 108
            + +      I + ++  D   +R  + +  Q    F K ++ E++ +  +++ V +  +
Sbjct: 77  EIILHPDNVNILSPEV--DPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSI 133

Query: 109 AQLEISNMIVDLG----IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD 164
            +  + N + +      +  +   LA  LSGG Q++L +A A       ++ DEPTS +D
Sbjct: 134 LEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALD 193

Query: 165 PYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS--VFLK 219
           P +  SI EL+   K   T+++ TH M +A  + D  A +  G+L   G++  +F+K
Sbjct: 194 PIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFIK 250

Length = 265

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 52/237 (21%), Positives = 112/237 (47%), Gaps = 41/237 (17%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           +  +NL+  +   K  +N L+++    +IT+ +G NG GK+T +     +L   SGT  +
Sbjct: 3   LRTENLTVGYGT-KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFL 61

Query: 61  YNHDIRTDMTT--IRRSLGVCPQ--------------------YNALFDKLTVEEHMWFY 98
            +  I + +++  + R L + PQ                    + +L+ +L+ E++    
Sbjct: 62  GDKPI-SMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNA--- 117

Query: 99  SQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158
               +V + + Q  I+++        +R +    LSGG +++  +AM     +  V+LDE
Sbjct: 118 ----RVNQAMEQTRINHLAD------RRLT---DLSGGQRQRAFLAMVLAQDTPVVLLDE 164

Query: 159 PTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           PT+ +D   +  +  L+ +   +G+TV+   H +++A    D + ++A G +   G+
Sbjct: 165 PTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221

Length = 255

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 64.5 bits (158), Expect = 1e-12
 Identities = 52/232 (22%), Positives = 98/232 (42%), Gaps = 42/232 (18%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP---VSSGTAK 59
           I++L      GK  + G+N+   + ++ + +G NG+GK+T    +MG  P   V+ G   
Sbjct: 3   IKDLHVSV-GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG-HPKYEVTEGEIL 60

Query: 60  IYNHDIRTDMTTIRRS---LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNM 116
               DI TD+    R+   + +  QY      +   + + +                   
Sbjct: 61  FKGEDI-TDLPPEERARLGIFLAFQYPPEIPGVKNADFLRY------------------- 100

Query: 117 IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI 176
            V+ G            SGG +++  +    +      ILDEP SG+D  + R + E++ 
Sbjct: 101 -VNEG-----------FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVIN 148

Query: 177 KYK-KGRTVILTTHYMDEADLL-GDRIAIIAAGKLQCCGSSVFLKNSFARGY 226
           K + +G++V++ THY    D +  DR+ ++  G++   G          +GY
Sbjct: 149 KLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELALEIEKKGY 200

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 65.3 bits (160), Expect = 1e-12
 Identities = 49/226 (21%), Positives = 94/226 (41%), Gaps = 63/226 (27%)

Query: 3   IQNLSKRFPNGKL--------AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS 54
           ++NL K FP GK         AV+G++ +  E +    +G +G GK+T   +++G+   +
Sbjct: 7   VKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT 66

Query: 55  SGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEIS 114
           SG  +I                         F+             + ++ K+  +  + 
Sbjct: 67  SG--EIL------------------------FEGK----------DITKLSKEERRERVL 90

Query: 115 NMIVDLGIPHKRTSLANT----LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
            ++  +G+P             LSGG ++++ +A A     + ++ DEP S +D   +  
Sbjct: 91  ELLEKVGLP---EEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQ 147

Query: 171 IWELLIKYKK--GRTVILTTHYMDEADL-----LGDRIAIIAAGKL 209
           I  LL   ++  G T +  +H     DL     + DRIA++  GK+
Sbjct: 148 ILNLLKDLQEELGLTYLFISH-----DLSVVRYISDRIAVMYLGKI 188

Length = 268

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 64.9 bits (158), Expect = 2e-12
 Identities = 53/206 (25%), Positives = 100/206 (48%), Gaps = 13/206 (6%)

Query: 16  AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS-----SGTAKIYNHDI--RTD 68
           A+  +N+     Q+T+ +G +G GK+T +  L  M  +      +G   +   DI    D
Sbjct: 18  ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77

Query: 69  MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL-----KQVPKDLAQLEISNMIVDLGIP 123
           +  +R  +G+  Q    F  +++ E++ +  +      K+V  ++ +  +    +   + 
Sbjct: 78  VADLRIKVGMVFQKPNPF-PMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK 136

Query: 124 HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRT 183
            +  S A  LSGG Q++L +A         +++DEPTS +DP +   I EL+ + KK  T
Sbjct: 137 DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYT 196

Query: 184 VILTTHYMDEADLLGDRIAIIAAGKL 209
           +++ TH M +A  + DR A    G+L
Sbjct: 197 IVIVTHSMQQARRISDRTAFFLMGEL 222

Length = 249

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 64.8 bits (158), Expect = 2e-12
 Identities = 50/209 (23%), Positives = 96/209 (45%), Gaps = 10/209 (4%)

Query: 13  GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72
           G+L V+G++V      +T  LG NG+GK+T + +L G L   +GT  +   D+   ++  
Sbjct: 13  GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHG-LSRR 71

Query: 73  RRS--LGVCPQYNALFDKLTVEE-----HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK 125
            R+  + +  Q +     LTV +      +   S         A + +   +    + H 
Sbjct: 72  ARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAV-VDRALARTELSHL 130

Query: 126 RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK-YKKGRTV 184
                +TLSGG ++++ VA A     + ++LDEPT+ +D  ++     L+ +    G TV
Sbjct: 131 ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTV 190

Query: 185 ILTTHYMDEADLLGDRIAIIAAGKLQCCG 213
           +   H ++ A    D + ++  G++   G
Sbjct: 191 VAALHDLNLAASYCDHVVVLDGGRVVAAG 219

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 64.1 bits (156), Expect = 2e-12
 Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 15/161 (9%)

Query: 34  GHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEE 93
           G NG+GKTT + +L G+ P  +G   +    +     +I R L        +   L+V E
Sbjct: 33  GPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLE 92

Query: 94  HMWFYSQL---KQVPKDLAQLEISNMIVDL-GIPHKRTSLANTLSGGMQRKLSVAMAFIG 149
           ++ F+      +QV + LA+       V L G   +       LS G QR++++A   + 
Sbjct: 93  NLRFWHADHSDEQVEEALAR-------VGLNGFEDR---PVAQLSAGQQRRVALARLLLS 142

Query: 150 GSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTH 189
           G    ILDEPT+ +D        E +  +  +G  V+LTTH
Sbjct: 143 GRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 58/225 (25%), Positives = 117/225 (52%), Gaps = 18/225 (8%)

Query: 1   MAIQNLSKRFPNGKL-AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           ++++N++   P GK   + G++ +    +  + +G +G+GK+T   +++G+ P +SG+ +
Sbjct: 317 LSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376

Query: 60  IYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEIS---N 115
           +   D++  D  T  + +G  PQ   LF   TV E++  + +     K +   +++    
Sbjct: 377 LDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGENADPEKIIEAAKLAGVHE 435

Query: 116 MIVDLGIPHK-RTSLAN---TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI 171
           +I  L +P    T +     TLSGG ++++++A A  G  + V+LDEP S +D    +++
Sbjct: 436 LI--LRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQAL 493

Query: 172 WELLIKYKK-GRTVILTTHYMDEADLLG--DRIAIIAAGKLQCCG 213
              +   K  G TV++ TH      LLG  D+I ++  G++   G
Sbjct: 494 ANAIKALKARGITVVVITH---RPSLLGCVDKILVLQDGRIARFG 535

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 65.3 bits (160), Expect = 4e-12
 Identities = 57/216 (26%), Positives = 103/216 (47%), Gaps = 15/216 (6%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
            ++L    P+GK     LN      Q  + +G +GAGKT+ ++ L+G LP   G+ KI  
Sbjct: 352 AEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQ-GSLKING 410

Query: 63  HDIRT-DMTTIRRSLGVCPQYNALF-----DKLTVEEHMWFYSQLKQVPKDLAQLEISNM 116
            ++R  D  + R+ L    Q   L      D + +        QL+Q    L    +S  
Sbjct: 411 IELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQA---LENAWVSEF 467

Query: 117 IVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
           +  L  G+       A  LS G  ++L++A A +   + ++LDEPT+ +D +S + + + 
Sbjct: 468 LPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQA 527

Query: 175 LIKYKKGRTVILTTHYMDEADLLG-DRIAIIAAGKL 209
           L    + +T ++ TH ++  DL   D+I ++  G++
Sbjct: 528 LNAASRRQTTLMVTHQLE--DLAQWDQIWVMQDGQI 561

Length = 588

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 63.6 bits (155), Expect = 5e-12
 Identities = 58/218 (26%), Positives = 104/218 (47%), Gaps = 32/218 (14%)

Query: 15  LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT----------AKIYNHD 64
            AV  +N+N     +T+F+G +G GK+T +  L  M  V  G             +Y   
Sbjct: 18  HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG 77

Query: 65  IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL-----KQVPKDLAQ--LEISNM- 116
           +  D   +RR++G+  Q    F  +++ +++    +L     K+   +L +  L  +N+ 
Sbjct: 78  V--DPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLW 135

Query: 117 --IVD-LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
             + D L  P         LSGG Q++L +A A       +++DEP S +DP S  +I +
Sbjct: 136 NEVKDRLDKP------GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIED 189

Query: 174 LLIKYKKGRTVILTTHYMDEADLLGDRIA---IIAAGK 208
           L+ + K+  T+++ TH M +A  + D+ A   + A GK
Sbjct: 190 LINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGK 227

Length = 258

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 63.0 bits (153), Expect = 5e-12
 Identities = 51/211 (24%), Positives = 101/211 (47%), Gaps = 5/211 (2%)

Query: 4   QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
           +++SK +  G+ A+ G+  +    ++    GH+GAGK+T + ++ G+   S+G      H
Sbjct: 5   EHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGH 64

Query: 64  DI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
           DI      ++  +RR +G+  Q + L    TV +++     +     D  +  +S  +  
Sbjct: 65  DITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDK 124

Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
           +G+  K  +    LSGG Q+++ +A A +     ++ DEPT  +D      I  L  ++ 
Sbjct: 125 VGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFN 184

Query: 180 K-GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           + G TV++ TH +        R+  ++ G L
Sbjct: 185 RVGVTVLMATHDIGLISRRSYRMLTLSDGHL 215

Length = 222

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 63.2 bits (154), Expect = 6e-12
 Identities = 52/192 (27%), Positives = 94/192 (48%), Gaps = 27/192 (14%)

Query: 34  GHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTT--------IRRS--------LG 77
           G +G+GK+T +  L        G   + +     D+ T        +RR+        L 
Sbjct: 44  GPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLR 103

Query: 78  VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLA-NTLSGG 136
           V P+ +AL     V E +      + VP+++A+ + ++++  L +P +  SLA  T SGG
Sbjct: 104 VIPRVSALD---VVAEPL----LARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGG 156

Query: 137 MQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEA-- 194
            Q+++++A  FI     ++LDEPT+ +D  +R  + E LI+  K R   L   + DE   
Sbjct: 157 EQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVE-LIREAKARGAALVGIFHDEEVR 215

Query: 195 DLLGDRIAIIAA 206
           + + DR+  ++A
Sbjct: 216 EAVADRLLDVSA 227

Length = 235

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 63.3 bits (154), Expect = 6e-12
 Identities = 60/229 (26%), Positives = 109/229 (47%), Gaps = 12/229 (5%)

Query: 2   AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           A++N+S R P G+  ++ L++ F   ++T  +GHNG+GK+T + ML    P S G   + 
Sbjct: 13  ALRNVSFRVP-GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLD 71

Query: 62  NHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEE------HMWFYSQLKQVPKDLAQLEIS 114
              + +       R +   PQ     + +TV E      + W  +  +    D  ++E +
Sbjct: 72  AQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEA 131

Query: 115 NMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
             +V L     R  L ++LSGG +++  +AM     SR ++LDEPTS +D   +  +  L
Sbjct: 132 ISLVGLKPLAHR--LVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLAL 189

Query: 175 L--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221
           +  +  ++G TVI   H ++ A    D +  +  G++   G+   L   
Sbjct: 190 VHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRG 238

Length = 265

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 63.2 bits (154), Expect = 6e-12
 Identities = 60/216 (27%), Positives = 106/216 (49%), Gaps = 27/216 (12%)

Query: 14  KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM---LPVSSGTAKIY--NHDI--- 65
           K A+  ++++  E  +T+F+G +G GK+T +  L  M   +     T KI     DI   
Sbjct: 32  KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDP 91

Query: 66  RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK 125
           R D+  +R  +G+  Q    F K ++ E++ +  ++  + +  A+L+    IV+  +  +
Sbjct: 92  RLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELD---EIVETSL--R 145

Query: 126 RTSLAN-----------TLSGGMQRKLSVAMAFIGGSRTVIL-DEPTSGVDPYSRRSIWE 173
           +  L              LSGG Q++L +A A I  S  VIL DEP S +DP +   + E
Sbjct: 146 KAGLWEEVKDRLHEPGTGLSGGQQQRLCIARA-IAVSPEVILMDEPCSALDPIATAKVEE 204

Query: 174 LLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           L+ + ++  T+++ TH M +A  +  R A    G L
Sbjct: 205 LIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNL 240

Length = 267

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 63.3 bits (154), Expect = 7e-12
 Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 17/219 (7%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT--- 57
           +++QN++  +   + AV  +  +    ++T+ +G +G GK+T +  L  M  +  G    
Sbjct: 14  ISLQNVTISYGTFE-AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLK 72

Query: 58  -------AKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQ 110
                    +Y+  +  D   +RR +G+  Q    F K ++ E++ F +++     D+ +
Sbjct: 73  GRVLFDGTDLYDPRV--DPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDE 129

Query: 111 L---EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS 167
           L    +    V      K      +LSGG Q++L +A         +++DEP S +DP S
Sbjct: 130 LVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPIS 189

Query: 168 RRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAA 206
              I E + + KK  T+++ TH M +A  + D  A   A
Sbjct: 190 TLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228

Length = 269

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 62.4 bits (152), Expect = 1e-11
 Identities = 53/213 (24%), Positives = 114/213 (53%), Gaps = 10/213 (4%)

Query: 4   QNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT---AK 59
           +N+SK F  G   V + +++N  + ++   +G +G+GK+T +  +  +  ++SG      
Sbjct: 5   KNVSKHF--GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDG 62

Query: 60  IYNHDIRTDMTTIRRSLG-VCPQYNALFDKLTVEEHMWFYS-QLKQVPKDLAQLEISNMI 117
           +  +D + D   IR+  G V  Q+  LF  LT  E++ F   +++   K+ A+ +   ++
Sbjct: 63  LKVNDPKVDERLIRQEAGMVFQQFY-LFPHLTALENVMFGPLRVRGASKEEAEKQARELL 121

Query: 118 VDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK 177
             +G+  +     + LSGG Q+++++A A     + ++ DEPTS +DP  R  + +++  
Sbjct: 122 AKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQD 181

Query: 178 Y-KKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
             ++G T+++ TH +  A+ +  R+  I  G++
Sbjct: 182 LAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRI 214

Length = 240

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 63.6 bits (155), Expect = 1e-11
 Identities = 48/196 (24%), Positives = 104/196 (53%), Gaps = 9/196 (4%)

Query: 3   IQNLSKRFPNGKLAV---NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           ++++ + +P+G+  V    G++++ Y  ++ + +G +G+GK+T +++L  +   +SGT +
Sbjct: 7   LKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYR 66

Query: 60  IYNHDIRT----DMTTIRRS-LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEIS 114
           +   D+ T     +  +RR   G   Q   L   LT  +++   +    + +    L   
Sbjct: 67  VAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQ 126

Query: 115 NMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
            ++  LG+  +     + LSGG Q+++S+A A + G + ++ DEPT  +D +S   +  +
Sbjct: 127 ELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAI 186

Query: 175 LIKYK-KGRTVILTTH 189
           L + + +G TVI+ TH
Sbjct: 187 LHQLRDRGHTVIIVTH 202

Length = 648

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 61.8 bits (151), Expect = 2e-11
 Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 26/208 (12%)

Query: 14  KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIR 73
             A+  ++      +    +G NGAGK+T + +L G+ P  SGT  +           + 
Sbjct: 35  FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTV--------RGRVS 86

Query: 74  RSLGVCPQYNALFDK-LTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL-GIPHKRTSLAN 131
             LG+       F+  LT  E+++   +L  + +     E  + I++   +         
Sbjct: 87  SLLGL----GGGFNPELTGRENIYLNGRLLGLSRKEID-EKIDEIIEFSELGDFIDLPVK 141

Query: 132 TLSGGMQRKL--SVAMAFIGGSRTVILDEPTSGVDPY----SRRSIWELLIKYKKGRTVI 185
           T S GM+ +L  ++A A       +++DE  +  D       +R + ELL   K+G+TVI
Sbjct: 142 TYSSGMKARLAFAIATAL--EPDILLIDEVLAVGDAAFQEKCQRRLRELL---KQGKTVI 196

Query: 186 LTTHYMDEADLLGDRIAIIAAGKLQCCG 213
           L +H       L DR  ++  GK++  G
Sbjct: 197 LVSHDPSSIKRLCDRALVLEKGKIRFDG 224

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 63/233 (27%), Positives = 111/233 (47%), Gaps = 37/233 (15%)

Query: 1   MAIQNLSKRFPNGKL-AVNGLNVNFYEDQITSFLGHNGAGKTT---TISMLMGMLPVSSG 56
           + ++NL+  F  GK  A+  +N++  ++Q+T+F+G +G GK+T   T + +  + P    
Sbjct: 14  IQVRNLN--FYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRA 71

Query: 57  TAKIY--NHDI---RTDMTTIRRSLGVCPQ---------YN------ALFDKLTVEEHMW 96
             +I     +I   + D+  +R  +G+  Q         Y+       LF+KL+  E   
Sbjct: 72  EGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAE--- 128

Query: 97  FYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL 156
                ++V   L +  + N + D     K      +LSGG Q++L +A         ++L
Sbjct: 129 ---MDERVEWALTKAALWNEVKD-----KLHQSGYSLSGGQQQRLCIARGIAIRPEVLLL 180

Query: 157 DEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           DEP S +DP S   I EL+ + K+  TV++ TH M +A    D  A +  G+L
Sbjct: 181 DEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGEL 233

Length = 260

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 59.8 bits (146), Expect = 2e-11
 Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 64/187 (34%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           ++NLSK +    L +  +++          +G NGAGK+T    L+          K+  
Sbjct: 3   LENLSKTYGGKLL-LKDISLTINPGDRIGLVGRNGAGKST----LL----------KLIA 47

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
            ++  D   +     V   Y               + QL                     
Sbjct: 48  GELEPDEGIVTWGSTVKIGY---------------FEQL--------------------- 71

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGR 182
                      SGG + +L++A   +     ++LDEPT+ +D  S  ++ E L +Y    
Sbjct: 72  -----------SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYP--G 118

Query: 183 TVILTTH 189
           TVIL +H
Sbjct: 119 TVILVSH 125

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 61.9 bits (150), Expect = 2e-11
 Identities = 53/215 (24%), Positives = 100/215 (46%), Gaps = 31/215 (14%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK- 59
           + ++NL+  F +  +  N +N++  ++ +T+ +G +G GK+T I  L  M  +  G    
Sbjct: 4   IEVENLNTYFDDAHILKN-VNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHE 62

Query: 60  ---------IYNHDIRTDMTTIRRSLGVC-----PQYNALFDKLTV------EEHMWFYS 99
                    IY+  +  D+  +R+ +G+      P   ++FD +        E+   F  
Sbjct: 63  GHIYLDGVDIYDPAV--DVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIE 120

Query: 100 QLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP 159
           +   V + L    + + + D     K    A  LSGG Q++L +A         +++DEP
Sbjct: 121 ER--VEESLKAAALWDEVKD-----KLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEP 173

Query: 160 TSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEA 194
            S +DP S   I +L+ K K+  T+++ TH M +A
Sbjct: 174 CSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQA 208

Length = 250

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 60.6 bits (147), Expect = 3e-11
 Identities = 51/195 (26%), Positives = 86/195 (44%), Gaps = 43/195 (22%)

Query: 33  LGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE 92
           LG NGAGKTT +  ++G++P + GT K+             R +G  PQ +         
Sbjct: 12  LGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG----WRHIGYVPQRH--------- 58

Query: 93  EHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKR------------------TSLAN--- 131
           E  W +      P  +A   +S     +G   +R                  T LA+   
Sbjct: 59  EFAWDF------PISVAHTVMSGRTGHIG-WLRRPCVADFAAVRDALRRVGLTELADRPV 111

Query: 132 -TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTH 189
             LSGG ++++ VA A       ++LDEP +G+D  ++  + EL I+    G  +++TTH
Sbjct: 112 GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171

Query: 190 YMDEADLLGDRIAII 204
            + +A    DR+ ++
Sbjct: 172 DLAQAMATCDRVVLL 186

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 62.4 bits (152), Expect = 3e-11
 Identities = 51/207 (24%), Positives = 92/207 (44%), Gaps = 24/207 (11%)

Query: 21  NVNF--YEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGV 78
           N++      +I    G  GAG+T     L G+ P   G   +   +I    T  R + G+
Sbjct: 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340

Query: 79  C--P---QYNALF---------DKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH 124
              P   Q + L+           LT      F+ +     ++ A LE     +++   H
Sbjct: 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNR-RGFWIKPA---RENAVLERYRRALNIKFNH 396

Query: 125 KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY--KKGR 182
              + A TLSGG Q+K+ +A       + +I+DEPT GVD  +R  I++ LI+    +  
Sbjct: 397 AEQA-ARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQ-LIRSIAAQNV 454

Query: 183 TVILTTHYMDEADLLGDRIAIIAAGKL 209
            V+  +  ++E + + DR+ ++  G++
Sbjct: 455 AVLFISSDLEEIEQMADRVLVMHQGEI 481

Length = 510

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 61.4 bits (149), Expect = 4e-11
 Identities = 49/205 (23%), Positives = 104/205 (50%), Gaps = 16/205 (7%)

Query: 16  AVNGLNVNFYEDQITSFLGHNGAGKTT---TISMLMGMLPVSS-------GTAKIYNHDI 65
           A++ ++++  E+Q+T+ +G +G GK+T    I+ +  ++  +            +Y+ D+
Sbjct: 54  ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113

Query: 66  RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDL-AQLEISNMIVDL--GI 122
             D   +RR +G+  Q    F K ++ +++ +  +++    D+  ++E S     L   +
Sbjct: 114 --DPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV 170

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGR 182
             +  S    LSGG Q++L +A A       +++DEP S +DP +   I +L+ +  +  
Sbjct: 171 KDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEY 230

Query: 183 TVILTTHYMDEADLLGDRIAIIAAG 207
           TV++ TH M +A  + D+ A+   G
Sbjct: 231 TVVIVTHNMQQAARISDKTAVFLTG 255

Length = 285

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 61.6 bits (150), Expect = 4e-11
 Identities = 64/260 (24%), Positives = 127/260 (48%), Gaps = 13/260 (5%)

Query: 1   MA---IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
           MA   ++N++K + +  ++ + +N++ +E +   F+G +G GK+T + M+ G+  ++SG 
Sbjct: 1   MASVTLRNVTKAYGDVVISKD-INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSG- 58

Query: 58  AKIYNHDIR-TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNM 116
             ++  + R  D+    R +G+  Q  AL+  L+V E+M F  +L    K+     ++ +
Sbjct: 59  -DLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQV 117

Query: 117 IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI 176
              L + H        LSGG ++++++    +      +LDEP S +D   R  +   + 
Sbjct: 118 AEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEIS 177

Query: 177 KYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL----KNSFARGYYLSL 230
           +  K  GRT+I  TH   EA  L D+I ++ AG++   G  + L     N F  G+  S 
Sbjct: 178 RLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRFVAGFIGSP 237

Query: 231 DMKSAQLQAEDIGLDGDRIR 250
            M    ++     ++  ++ 
Sbjct: 238 KMNFLPVKVTATAIEQVQVE 257

Length = 369

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 60.2 bits (146), Expect = 7e-11
 Identities = 57/230 (24%), Positives = 107/230 (46%), Gaps = 30/230 (13%)

Query: 3   IQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI- 60
             +++KRF  G L V +GLN +    +  + +G +G+GK+T + +LM + P+  G  ++ 
Sbjct: 3   FSDVTKRF--GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60

Query: 61  ----YNHDIRT---------DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL-KQVPK 106
               Y+   R           +  +R  +G+  Q   LF   TV +++     L   + +
Sbjct: 61  GEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMAR 120

Query: 107 DLAQ---LEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGV 163
             A+   +E+ +M+   G+  K   +   LSGG Q+++++A A     + ++ DE TS +
Sbjct: 121 AEAEKRAMELLDMV---GLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSAL 177

Query: 164 DPY----SRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           DP         I  L  ++    T++L TH M  A    DR+     G++
Sbjct: 178 DPELVGEVLNVIRRLASEHD--LTMLLVTHEMGFAREFADRVCFFDKGRI 225

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 60.3 bits (146), Expect = 8e-11
 Identities = 51/205 (24%), Positives = 101/205 (49%), Gaps = 14/205 (6%)

Query: 16  AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML---PVSSGTAKIYNH-----DIRT 67
           A+  +N++ +E+++T+ +G +G GK+T I  L  M+   P    T KI        D   
Sbjct: 39  ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98

Query: 68  DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL-----KQVPKDLAQLEISNMIVDLGI 122
            +  +R ++G+  Q    F K ++ +++ +  ++     K+   ++ +  +    +   +
Sbjct: 99  SVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDEL 157

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGR 182
             +    A  LSGG Q++L +A         +++DEPTS +DP S   + EL+ + KK  
Sbjct: 158 KDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDY 217

Query: 183 TVILTTHYMDEADLLGDRIAIIAAG 207
           ++I+ TH M +A  + D+ A    G
Sbjct: 218 SIIIVTHNMQQAARISDKTAFFLNG 242

Length = 271

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 60.0 bits (146), Expect = 8e-11
 Identities = 47/188 (25%), Positives = 98/188 (52%), Gaps = 21/188 (11%)

Query: 33  LGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE 92
           LG +GAGK+T ++++ G L  +SG+  +   D  T     RR + +  Q N LF  LTV 
Sbjct: 31  LGPSGAGKSTLLNLIAGFLTPASGSLTLNGQD-HTTTPPSRRPVSMLFQENNLFSHLTVA 89

Query: 93  EHMWF---------YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSV 143
           +++            +Q +++     Q+ I +++  L  P +       LSGG ++++++
Sbjct: 90  QNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARL--PGQ-------LSGGQRQRVAL 140

Query: 144 AMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRI 201
           A   +     ++LDEP S +DP  R+ +  L+  +  ++  T+++ +H +++A  +  R 
Sbjct: 141 ARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRS 200

Query: 202 AIIAAGKL 209
            ++A G++
Sbjct: 201 LVVADGRI 208

Length = 232

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 59.9 bits (145), Expect = 8e-11
 Identities = 44/199 (22%), Positives = 84/199 (42%), Gaps = 21/199 (10%)

Query: 28  QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTT--IRRSLGVCPQYNAL 85
           +I   +G NGAGK+T ++ + GM    SG+ +     +     T   R    +  Q    
Sbjct: 26  EILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPP 84

Query: 86  FDKLTVEEHMWFYSQLKQVPKDLAQL--EISNMIVDLGIPHKRTSLANTLSGGMQRKLSV 143
           F        +W Y  L Q  K   +L  +++     L +  K     N LSGG  +++ +
Sbjct: 85  F-----AMPVWHYLTLHQPDKTRTELLNDVAGA---LALDDKLGRSTNQLSGGEWQRVRL 136

Query: 144 AMAFIG-------GSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTHYMDEAD 195
           A   +          + ++LDEP + +D   + ++  LL    ++G  +++++H ++   
Sbjct: 137 AAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTL 196

Query: 196 LLGDRIAIIAAGKLQCCGS 214
               R  ++  GKL   G 
Sbjct: 197 RHAHRAWLLKRGKLLASGR 215

Length = 248

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 55/212 (25%), Positives = 106/212 (50%), Gaps = 14/212 (6%)

Query: 4   QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
           +++SK++ +G   + G++   +  ++ + LG NGAGK+T + ++ G++P  SGT +I  +
Sbjct: 15  RSISKQY-SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGN 73

Query: 64  DIRTDMTTIRRSLGV--CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG 121
                       LG+   PQ   LF  L+V+E++ F   L +    + +++   ++  LG
Sbjct: 74  PCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILF--GLPKRQASMQKMK--QLLAALG 129

Query: 122 IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR----RSIWELLIK 177
                 S A +L    ++ + +    +  SR +ILDEPT+ + P         I ELL  
Sbjct: 130 CQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELL-- 187

Query: 178 YKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
             +G  ++  +H + E   L DRI+++  G +
Sbjct: 188 -AQGVGIVFISHKLPEIRQLADRISVMRDGTI 218

Length = 510

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 61/227 (26%), Positives = 105/227 (46%), Gaps = 39/227 (17%)

Query: 5   NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD 64
            + K FP G  A++ ++ +    Q+ + +G NGAGK+T + +L G     +G+  I   +
Sbjct: 9   GIGKTFP-GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQE 67

Query: 65  IRTDMTTIRRSL--GVCPQYNAL--FDKLTVEEHMWFYSQLKQVP--------KDL---- 108
           +R    +   +L  GV   Y  L    ++TV E+++    L Q+P        + L    
Sbjct: 68  MR--FASTTAALAAGVAIIYQELHLVPEMTVAENLY----LGQLPHKGGIVNRRLLNYEA 121

Query: 109 -AQLEISNMIVDLGIPHKRTSLANTLSGGMQRKL-SVAMAFIGGSRTVILDEPTSGVDPY 166
             QLE   + +D   P K  S+        QR++  +A A    +R +  DEPTS +   
Sbjct: 122 REQLEHLGVDIDPDTPLKYLSIG-------QRQMVEIAKALARNARVIAFDEPTSSL--- 171

Query: 167 SRRSIWEL--LIK--YKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           S R I +L  +I+    +GR ++  +H M+E   L D I +   G+ 
Sbjct: 172 SAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRY 218

Length = 501

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 59.6 bits (144), Expect = 3e-10
 Identities = 54/216 (25%), Positives = 100/216 (46%), Gaps = 24/216 (11%)

Query: 14  KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIR 73
           K  ++ +N+      + + +G  G GKT+ IS ++G L               T    IR
Sbjct: 630 KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS-----------HAETSSVVIR 678

Query: 74  RSLGVCPQYNALFDKLTVEEHMWFYSQLKQV----PKDLAQLEISNMIVDLGIPHKRTSL 129
            S+   PQ + +F+  TV E++ F S  +        D+  L+     +DL      T +
Sbjct: 679 GSVAYVPQVSWIFNA-TVRENILFGSDFESERYWRAIDVTALQHD---LDLLPGRDLTEI 734

Query: 130 AN---TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVI 185
                 +SGG ++++S+A A    S   I D+P S +D +    +++  +K + KG+T +
Sbjct: 735 GERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRV 794

Query: 186 LTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221
           L T+ +    L+ DRI +++ G ++  G+   L  S
Sbjct: 795 LVTNQLHFLPLM-DRIILVSEGMIKEEGTFAELSKS 829

Length = 1495

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 58.6 bits (142), Expect = 4e-10
 Identities = 57/212 (26%), Positives = 111/212 (52%), Gaps = 10/212 (4%)

Query: 3   IQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           ++N++KRF  G   V + LN+   +  + + LG +G GKTT + ++ G+   + G   I 
Sbjct: 9   LKNITKRF--GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFID 66

Query: 62  NHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNM--IVD 119
             D+ T  +  +R + +  Q  ALF  +++ E++ +  ++  VPK+  +  +     +VD
Sbjct: 67  GEDV-THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVD 125

Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
           L     R    + +SGG Q+++++A A I   + ++ DEP S +D   RRS+ E + + +
Sbjct: 126 LAGFEDR--YVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQ 183

Query: 180 K--GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           +    T +  TH   EA  + D + ++  GK+
Sbjct: 184 QQFNITSLYVTHDQSEAFAVSDTVIVMNKGKI 215

Length = 351

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 59.2 bits (143), Expect = 5e-10
 Identities = 53/209 (25%), Positives = 97/209 (46%), Gaps = 29/209 (13%)

Query: 17  VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSL 76
           +NG+  +  E  + + +G  G GK++ +S L+  +       K+  H        ++ S+
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD------KVEGH------VHMKGSV 701

Query: 77  GVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI--PHKRTSLAN--- 131
              PQ  A     ++ E++ F   L +       LE   ++ DL I     RT +     
Sbjct: 702 AYVPQ-QAWIQNDSLRENILFGKALNE-KYYQQVLEACALLPDLEILPSGDRTEIGEKGV 759

Query: 132 TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK---KGRTVILTT 188
            LSGG ++++S+A A    +   + D+P S VD +  + I+E +I  +   K +T IL T
Sbjct: 760 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVT 819

Query: 189 H---YMDEADLLGDRIAIIAAGKLQCCGS 214
           H   Y+ + D+    I +++ GK+   GS
Sbjct: 820 HGISYLPQVDV----IIVMSGGKISEMGS 844

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 57.8 bits (140), Expect = 5e-10
 Identities = 55/214 (25%), Positives = 100/214 (46%), Gaps = 31/214 (14%)

Query: 1   MAIQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTT---TISMLMGMLPVSSG 56
           + +++L KR+  G+  V  G+++      + S +G +G+GK+T    I+ L    P S+G
Sbjct: 7   LEVEDLHKRY--GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE--KP-SAG 61

Query: 57  TAKIYNHDIRTDMTT--------------IRRSLGVCPQYNALFDKLTVEEH-MWFYSQL 101
           + ++   +IR                   +R  LG+  Q+  L+  +TV E+ +     +
Sbjct: 62  SIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV 121

Query: 102 KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTS 161
             V K  A       +  +GI  K  +    LSGG Q+++++A A       ++ DEPTS
Sbjct: 122 LGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTS 181

Query: 162 GVDPYSRRSIWELLIKYKK----GRTVILTTHYM 191
            +DP     + E+L   +     GRT+++ TH M
Sbjct: 182 ALDP---ELVGEVLKVMQDLAEEGRTMVVVTHEM 212

Length = 256

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 58.0 bits (140), Expect = 5e-10
 Identities = 52/201 (25%), Positives = 94/201 (46%), Gaps = 22/201 (10%)

Query: 16  AVNGLNVNFYEDQITSFLGHNGAGKTT---TISMLMGMLPV--SSGTAKIYNHDIR---T 67
           AV  +N +     +T+ +G +G GK+T    I+ +  ++P   ++G       DI    T
Sbjct: 54  AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113

Query: 68  DMTTIRRSLGVC-----PQYNALFDKLTVEEHMWFYSQLKQ----VPKDLAQLEISNMIV 118
           D   +R+ +G+      P   ++FD +     +   +  KQ    V K L +  + + + 
Sbjct: 114 DEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS 173

Query: 119 DLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY 178
           D     +    A  LSGG Q++L VA         ++LDEPTS +DP +   I +L+ + 
Sbjct: 174 D-----RLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL 228

Query: 179 KKGRTVILTTHYMDEADLLGD 199
           +   T+++ TH M +A  + D
Sbjct: 229 RGSYTIMIVTHNMQQASRVSD 249

Length = 286

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 58.2 bits (141), Expect = 7e-10
 Identities = 46/211 (21%), Positives = 99/211 (46%), Gaps = 25/211 (11%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           + I N+S  + +  L +  +N++       + +GH G+GK+T  S+LMG  P++ G  ++
Sbjct: 341 IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400

Query: 61  YNHDIRT-DMTTIRRSLGVCPQ-----YNALFDKLTV-----EEHMWFYSQLKQVPKDLA 109
               + +   + +R+ + +  Q      +     +T+     EE +W      Q    L 
Sbjct: 401 DGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVW------QA---LE 451

Query: 110 QLEISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS 167
            ++++ +   L  G+        N LS G ++ L++A   +   + +ILDE T+ +D  +
Sbjct: 452 TVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGT 511

Query: 168 RRSIWELLIKYKKGRTVILTTHYMD---EAD 195
            ++I + L   ++  T+++  H +    EAD
Sbjct: 512 EQAIQQALAAVREHTTLVVIAHRLSTIVEAD 542

Length = 592

>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional

 Score = 56.5 bits (136), Expect = 8e-10
 Identities = 43/189 (22%), Positives = 83/189 (43%), Gaps = 21/189 (11%)

Query: 17  VNGLNVNF-YEDQI----TSF----------LGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           ++ + ++F Y DQ      SF           G NGAGKTT + ++ G+L    G     
Sbjct: 2   LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFE 61

Query: 62  NHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG 121
              I+ D+ T ++ L      + +   LT+ E+  +      +      + I+ +     
Sbjct: 62  RQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLY-----DIHFSPGAVGITELCRLFS 116

Query: 122 IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KK 180
           + H        LS G +R++++   ++  ++  +LDEP   +D  S  +I   + ++  K
Sbjct: 117 LEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAK 176

Query: 181 GRTVILTTH 189
           G  V+LT+H
Sbjct: 177 GGAVLLTSH 185

Length = 200

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 57.1 bits (138), Expect = 9e-10
 Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 33/232 (14%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           +++  LSK +  GK     ++ + Y  ++   +G +G+GKTT +  + G L   +GT   
Sbjct: 7   LSVSGLSKLYGPGK-GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTY 65

Query: 61  YNHDIR-TDMTTI----RRSL-----GVCPQYNALFDKLTV-------EEHMWF----YS 99
              D +  D+ T+    RR L     G   Q      ++ V       E  M      Y 
Sbjct: 66  RMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG 125

Query: 100 QLKQVPKD-LAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158
            ++   +D L ++EI    +D         L  T SGGMQ++L +A   +   R V +DE
Sbjct: 126 NIRAEAQDWLEEVEIDLDRID--------DLPRTFSGGMQQRLQIARNLVTRPRLVFMDE 177

Query: 159 PTSGVDPYSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGK 208
           PT G+D   +  + +LL  +  + G  V++ TH +  A LL DR+ ++  G+
Sbjct: 178 PTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQ 229

Length = 258

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 57.8 bits (140), Expect = 9e-10
 Identities = 65/246 (26%), Positives = 115/246 (46%), Gaps = 43/246 (17%)

Query: 1   MAIQNLSKRFPNGK-------LAVNGL---------NVNF--YEDQITSFLGHNGAGKTT 42
           M  ++L++RFP+ +       L V  L         +V+F  ++ +I    G  GA +T 
Sbjct: 230 MVGRSLTQRFPDKENKPGEVILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTD 289

Query: 43  TISMLMGMLPVSSGTAKIY-----NHDIRTDM-------TTIRRSLGVCPQYNALFDKL- 89
            +  L G+   S+GT  ++     NH+    +       T  RRS G+    +  F+ L 
Sbjct: 290 IVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLI 349

Query: 90  -TVEEHMWFYSQL--KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMA 146
             +  +      L   ++  D  Q  I +M V    P  RT +  +LSGG Q+K+ +   
Sbjct: 350 SNIRNYKNKVGLLDNSRMKSD-TQWVIDSMRVK--TPGHRTQIG-SLSGGNQQKVIIGRW 405

Query: 147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTHYMDEADLLG--DRIAI 203
            +     ++LDEPT G+D  ++  I++L+ +  KK + +I+ +  M E  LLG  DRI +
Sbjct: 406 LLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPE--LLGITDRILV 463

Query: 204 IAAGKL 209
           ++ G +
Sbjct: 464 MSNGLV 469

Length = 491

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 57.9 bits (141), Expect = 1e-09
 Identities = 53/226 (23%), Positives = 95/226 (42%), Gaps = 21/226 (9%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           +++LS +   G  AV  ++      +I    G  G G++  +  + G+   +SG   +  
Sbjct: 260 VEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNG 319

Query: 63  HDIRTDMTT---IRRSLGVCP---QYNALFDKLTVEEHMWFYSQLKQVP----------- 105
            D+   ++     R  L   P     + L   L++ E++      K+             
Sbjct: 320 KDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAI 379

Query: 106 KDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDP 165
           +  A+  I    V    P      A +LSGG Q+KL +A         +I  +PT G+D 
Sbjct: 380 RKFARELIEEFDVRAPSPDAP---ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDV 436

Query: 166 YSRRSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
            +   I E L++ +  G+ V+L +  +DE   L DRIA+I  G++ 
Sbjct: 437 GAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIV 482

Length = 501

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 56.7 bits (137), Expect = 1e-09
 Identities = 46/218 (21%), Positives = 104/218 (47%), Gaps = 18/218 (8%)

Query: 4   QNLSKRFPN--GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           QN++  +P     L +  ++   +  ++T+ +G +G+GK+T +++L        G   + 
Sbjct: 15  QNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLD 74

Query: 62  NHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP----KDLAQLE---- 112
              I   +   +   + +  Q   LF + ++++++ +   L+       K+ AQ      
Sbjct: 75  GKPISQYEHKYLHSKVSLVGQEPVLFAR-SLQDNIAY--GLQSCSFECVKEAAQKAHAHS 131

Query: 113 -ISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI 171
            IS +    G   +     + LSGG ++++++A A I   + +ILDE TS +D  S + +
Sbjct: 132 FISEL--ASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQV 189

Query: 172 WELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
            + L  + + RTV++  H +   +   D+I ++  G++
Sbjct: 190 QQALYDWPERRTVLVIAHRLSTVE-RADQILVLDGGRI 226

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 57.1 bits (138), Expect = 1e-09
 Identities = 49/208 (23%), Positives = 99/208 (47%), Gaps = 7/208 (3%)

Query: 20  LNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI----RTDMTTIRRS 75
           +++     +IT+ +G +G GKTT + ++ G +    G       +I    R+ + T+R+ 
Sbjct: 26  ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85

Query: 76  LGVCPQYNALFDKLTVEEHM-WFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLS 134
           + +  Q  ALF  + V +++ +   +  Q+P  L    +   +  +G+      + + LS
Sbjct: 86  MSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELS 145

Query: 135 GGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKGRTVILTTHYMD 192
           GGM R+ ++A A       ++ DEP  G DP +   + +L+  +    G T ++ +H + 
Sbjct: 146 GGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP 205

Query: 193 EADLLGDRIAIIAAGKLQCCGSSVFLKN 220
           E   + D   I+A  K+   GS+  L+ 
Sbjct: 206 EVLSIADHAYIVADKKIVAHGSAQALQA 233

Length = 269

>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter

 Score = 57.7 bits (139), Expect = 1e-09
 Identities = 47/199 (23%), Positives = 92/199 (46%), Gaps = 10/199 (5%)

Query: 15  LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRR 74
            A+  +++   +  I   +G NG GK+T   +  G+     G   +    +  D     R
Sbjct: 356 FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYR 415

Query: 75  SL--GVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANT 132
            L   +   ++ LFD L +      ++ L    + L +LEI++ +         T+    
Sbjct: 416 DLFSAIFADFH-LFDDL-IGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTT---A 470

Query: 133 LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK--YKKGRTVILTTHY 190
           LS G Q++L++  A++     ++ DE  +  DP  +R  +E L+    ++G+T+I+ +H 
Sbjct: 471 LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISH- 529

Query: 191 MDEADLLGDRIAIIAAGKL 209
            D+   L D+I  +AAG +
Sbjct: 530 DDQYFELADQIIKLAAGCI 548

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 52/203 (25%), Positives = 98/203 (48%), Gaps = 16/203 (7%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML-PVSSGTAK 59
           + ++N+S R P   L  N +N    + +I + +G +G GK+T +S ++G L    S T +
Sbjct: 3   LCLKNVSLRLPGSCLLAN-VNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE 61

Query: 60  IYNHDIRTDMT-TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDL---AQLEISN 115
           ++ ++ R DM    +R +G+  Q   LF  L+V +++ F      +P  L   A+   +N
Sbjct: 62  LWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLF-----ALPATLKGNARRNAAN 116

Query: 116 MIVD-LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
             ++  G+         TLSGG + ++++  A +   + ++LDEP S +D   R    + 
Sbjct: 117 AALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQW 176

Query: 175 LIKYKK--GRTVILTTHYMDEAD 195
           +    +  G   +  TH  D  D
Sbjct: 177 VFSEVRAAGIPTVQVTH--DLQD 197

Length = 213

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 56.9 bits (137), Expect = 1e-09
 Identities = 50/222 (22%), Positives = 106/222 (47%), Gaps = 12/222 (5%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT--- 57
           +A  +L  R+ +  + + GLN++F    +T  +G NG GK+T    L G+L    G    
Sbjct: 2   LATSDLWFRYQDEPV-LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLW 60

Query: 58  -AKIYNHDIRTDMTTIRRSLGVC---PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEI 113
             K  ++  R  +  +R+ +      P+    +    ++  + F  +   VP+      +
Sbjct: 61  QGKPLDYSKR-GLLALRQQVATVFQDPEQQIFYTD--IDSDIAFSLRNLGVPEAEITRRV 117

Query: 114 SNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
              +  +   H R      LS G ++++++A A +  +R ++LDEPT+G+DP  R  +  
Sbjct: 118 DEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIA 177

Query: 174 LLIK-YKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           ++ +   +G  VI+++H +D    + D + ++  G++   G+
Sbjct: 178 IIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGA 219

Length = 271

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 56.4 bits (137), Expect = 1e-09
 Identities = 49/224 (21%), Positives = 99/224 (44%), Gaps = 15/224 (6%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP---VSSGTAK 59
           I++L       K  + G+N+   E ++ + +G NG+GK+T    +MG  P   V+ G   
Sbjct: 6   IKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG-HPKYEVTEGEIL 64

Query: 60  IYNHDIRTDMTT---IRRSLGVCPQYNALFDKLTVEEHM-WFYSQLKQVPKDLAQL--EI 113
               DI  +++     R  + +  QY      +T  + +    +  +     L +   E+
Sbjct: 65  FDGEDI-LELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKEL 123

Query: 114 SNMIVDLGIPHK--RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI 171
                 LG+  +     +    SGG +++  +    +   +  ILDEP SG+D  + + +
Sbjct: 124 KEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIV 183

Query: 172 WELLIKYK-KGRTVILTTHYMDEADLLG-DRIAIIAAGKLQCCG 213
            E +   + +GR V++ THY    D +  D++ ++  G++   G
Sbjct: 184 AEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227

Length = 251

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 25/201 (12%)

Query: 4   QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
            ++S  + N +  V  ++      Q  + +G  GAGK+T I++L  +    SG   I   
Sbjct: 338 DDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGT 397

Query: 64  DIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE---------- 112
           DIRT    ++RR++ V  Q   LF++ ++E+++       +V +  A  E          
Sbjct: 398 DIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNI-------RVGRPDATDEEMRAAAERAQ 449

Query: 113 ISNMIVDLGIPHKRTSLA----NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR 168
             + I     P    ++       LSGG +++L++A A +     +ILDE TS +D  + 
Sbjct: 450 AHDFI--ERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETE 507

Query: 169 RSIWELLIKYKKGRTVILTTH 189
             +   L +  KGRT  +  H
Sbjct: 508 AKVKAALDELMKGRTTFIIAH 528

Length = 588

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 54/224 (24%), Positives = 110/224 (49%), Gaps = 20/224 (8%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           I N+ K F   ++ +N ++++    Q+ + LG +G+GKTT + ++ G+   +SG  + + 
Sbjct: 5   IANIKKSFGRTQV-LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHG 63

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP--KDLAQLEISNMIVDL 120
            D+ + +    R +G   Q+ ALF  +TV +++ F   L  +P  +      I   +  L
Sbjct: 64  TDV-SRLHARDRKVGFVFQHYALFRHMTVFDNIAF--GLTVLPRRERPNAAAIKAKVTQL 120

Query: 121 ----GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL- 175
                + H        LSGG ++++++A A     + ++LDEP   +D   R+ +   L 
Sbjct: 121 LEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLR 180

Query: 176 -----IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
                +K+    T +  TH  +EA  + DR+ +++ G ++  G+
Sbjct: 181 QLHEELKF----TSVFVTHDQEEAMEVADRVVVMSQGNIEQAGT 220

Length = 353

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 53/206 (25%), Positives = 102/206 (49%), Gaps = 16/206 (7%)

Query: 16  AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI----RTDMTT 71
           AV+G+++     Q    +G +G+GK+T    L+ ++P S G  +    DI    R +M  
Sbjct: 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-SQGEIRFDGQDIDGLSRKEMRP 360

Query: 72  IRRSLGVCPQ--YNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD----LGI-PH 124
           +RR + V  Q  Y +L  ++TV + +     L+     L+  E    +++    +G+ P 
Sbjct: 361 LRRRMQVVFQDPYGSLSPRMTVGQII--EEGLRVHEPKLSAAERDQRVIEALEEVGLDPA 418

Query: 125 KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKGR 182
            R    +  SGG ++++++A A I     ++LDEPTS +D   +  + +LL  ++ K G 
Sbjct: 419 TRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGL 478

Query: 183 TVILTTHYMDEADLLGDRIAIIAAGK 208
           + +  +H +     L  R+ ++  GK
Sbjct: 479 SYLFISHDLAVVRALCHRVIVMRDGK 504

Length = 534

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 54.8 bits (133), Expect = 4e-09
 Identities = 49/173 (28%), Positives = 75/173 (43%), Gaps = 27/173 (15%)

Query: 28  QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD 87
           QI    G NGAGKT+ + +L G+    +G        IR       + L        +  
Sbjct: 31  QIE---GPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKT 87

Query: 88  KLTVEEHMWFYSQLKQVPKD------LAQLEISNMIVDLG----IPHKRTSLANTLSGGM 137
           +LT  E++ FY +L     D      LAQ       V L     +P         LS G 
Sbjct: 88  ELTALENLRFYQRLHGPGDDEALWEALAQ-------VGLAGFEDVP------VRQLSAGQ 134

Query: 138 QRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTH 189
           QR++++A  ++  +   ILDEP + +D      +  LL ++ ++G  VILTTH
Sbjct: 135 QRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTH 187

Length = 204

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 55.9 bits (135), Expect = 5e-09
 Identities = 58/215 (26%), Positives = 103/215 (47%), Gaps = 17/215 (7%)

Query: 5   NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD 64
           N+SK FP  K A++ +N+      I + +G NGAGK+T +  L G+    SG+      +
Sbjct: 3   NISKSFPGVK-ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKE 61

Query: 65  IRTDMTTIRRSL--GV--CPQYNALFDKLTVEEHMWFYSQLKQ---VPKDLAQLEISNMI 117
           I  D  + + +L  G+    Q   L  + +V ++MW      +   V +D    +   + 
Sbjct: 62  I--DFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIF 119

Query: 118 VDLGI---PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
            +L I   P  + +   TLS    + + +A AF   ++ VI+DEPTS +       ++ +
Sbjct: 120 DELDIDIDPRAKVA---TLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTI 176

Query: 175 LIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGK 208
           + K K +G  ++  +H M+E   L D I I+  G+
Sbjct: 177 IRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQ 211

Length = 491

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score = 54.3 bits (131), Expect = 5e-09
 Identities = 49/210 (23%), Positives = 90/210 (42%), Gaps = 20/210 (9%)

Query: 3   IQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           ++NLS R+ P+    +  ++      +    +G  GAGK+T I  L   L    G  +I 
Sbjct: 9   VENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEID 68

Query: 62  NHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
             DI T  +  +R SL + PQ   LF   T+  ++  + +     +    L +S      
Sbjct: 69  GIDISTIPLEDLRSSLTIIPQDPTLFSG-TIRSNLDPFDEYSDE-EIYGALRVS------ 120

Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
                       LS G ++ L +A A +   R ++LDE T+ +D  +   I + + +   
Sbjct: 121 -------EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFT 173

Query: 181 GRTVILTTHYMDE-ADLLGDRIAIIAAGKL 209
             T++   H +    D   D+I ++ AG++
Sbjct: 174 NSTILTIAHRLRTIIDY--DKILVMDAGEV 201

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 55.9 bits (135), Expect = 5e-09
 Identities = 51/203 (25%), Positives = 101/203 (49%), Gaps = 12/203 (5%)

Query: 15  LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR-TDMTTIR 73
            A++GLN+     +  + +G +GAGK+T   +L+      SG   +   D+R  D   +R
Sbjct: 354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELR 413

Query: 74  RSLGVCPQYNALFDKLTVEEHMWF---YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSL- 129
             + + PQ   LF   +V E++ +    +  ++V +  A+   ++  +   +P    +  
Sbjct: 414 ARMALVPQDPVLFAA-SVMENIRYGRPDATDEEV-EAAARAAHAHEFI-SALPEGYDTYL 470

Query: 130 ---ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVIL 186
                TLSGG ++++++A A +  +  ++LDE TS +D  S + + + L    KGRT ++
Sbjct: 471 GERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLI 530

Query: 187 TTHYMDEADLLGDRIAIIAAGKL 209
             H +    L  DRI ++  G++
Sbjct: 531 IAHRLATV-LKADRIVVMDQGRI 552

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 49/209 (23%), Positives = 81/209 (38%), Gaps = 49/209 (23%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           + ++NLS R P+G+  ++ LN      +     G +GAGKT+ +  L G+ P  SG    
Sbjct: 393 ITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRI-- 450

Query: 61  YNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ--------LKQV------PK 106
                              P  +AL           F  Q        L++         
Sbjct: 451 -----------------SMPADSALL----------FLPQRPYLPQGTLREALCYPNAAP 483

Query: 107 DLAQLEISNMIVDLGIPHKRTSLANT------LSGGMQRKLSVAMAFIGGSRTVILDEPT 160
           D +  E+  ++  +G+      L         LSGG Q++L+ A   +   + V LDE T
Sbjct: 484 DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEAT 543

Query: 161 SGVDPYSRRSIWELLIKYKKGRTVILTTH 189
           S +D  +   +++LL +     TVI   H
Sbjct: 544 SALDEETEDRLYQLLKEELPDATVISVGH 572

Length = 604

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 54.5 bits (132), Expect = 7e-09
 Identities = 61/246 (24%), Positives = 101/246 (41%), Gaps = 61/246 (24%)

Query: 1   MAIQNLSKRFPNGKLAVNGL-NVNF--YEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
           ++++ L+K +   K    G  +V+F  Y  ++   +G +G+GKTT ++ L   L   +G 
Sbjct: 7   LSVRGLTKLYGPRK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGE 62

Query: 58  AKIY--NHDIRTDMTTI----RRSL-----GVCPQYNALFDKLTV--------------E 92
              Y        D+  +    RR L     G   Q+     ++ V               
Sbjct: 63  V-HYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGA 121

Query: 93  EHMWFYSQLKQVPKD-LAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGS 151
            H   Y  ++    D L ++EI    +D         L  T SGGMQ++L +A   +   
Sbjct: 122 RH---YGDIRATAGDWLERVEIDAARID--------DLPTTFSGGMQQRLQIARNLVTHP 170

Query: 152 RTVILDEPTSGVDPYS---------RRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIA 202
           R V +DEPT G+D  S         R  + EL      G  V++ TH +  A LL  R+ 
Sbjct: 171 RLVFMDEPTGGLD-VSVQARLLDLLRGLVREL------GLAVVIVTHDLAVARLLAHRLL 223

Query: 203 IIAAGK 208
           ++  G+
Sbjct: 224 VMKQGR 229

Length = 258

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 54.3 bits (131), Expect = 7e-09
 Identities = 44/170 (25%), Positives = 81/170 (47%), Gaps = 19/170 (11%)

Query: 34  GHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVE 92
           G +G GK+T + ++  ++  +SGT      DI T      R+ +  C Q   LF   TV 
Sbjct: 40  GPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD-TVY 98

Query: 93  EHMWFYSQL-KQVP------KDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAM 145
           +++ F  Q+  Q P       DL +  + + I+   I          LSGG ++++S+  
Sbjct: 99  DNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNI--------AELSGGEKQRISLIR 150

Query: 146 AFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY--KKGRTVILTTHYMDE 193
                 + ++LDE TS +D  ++ ++ E++ +Y  ++   V+  TH  DE
Sbjct: 151 NLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE 200

Length = 225

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 54.5 bits (132), Expect = 7e-09
 Identities = 45/227 (19%), Positives = 89/227 (39%), Gaps = 46/227 (20%)

Query: 2   AIQNLSKRFPNGK--LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
            ++ L+K         A+  ++   Y+ +    +GHNGAGK+T + ++ G+   +SG  K
Sbjct: 26  RLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVK 85

Query: 60  I-------------YNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK 106
           +             ++ ++ T    I            L   LT +E       + +   
Sbjct: 86  VTGKVAPLIELGAGFDPEL-TGRENIY--------LRGLILGLTRKE-------IDEKVD 129

Query: 107 DLAQL-EISNMIVDLGIPHKRTSLANTLSGGMQRKL--SVAMAFIGGSRTVILDEPTSGV 163
           ++ +  E+ + I D  +         T S GM  +L  SVA         ++LDE  +  
Sbjct: 130 EIIEFAELGDFI-DQPV--------KTYSSGMYARLAFSVATHV--EPDILLLDEVLAVG 178

Query: 164 DPY-SRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           D     + +  L    +K +T++L +H +       DR   +  G++
Sbjct: 179 DAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQI 225

Length = 249

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 55.5 bits (134), Expect = 8e-09
 Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 18/186 (9%)

Query: 28  QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD 87
            +T+ +G +GAGKTT +++L   +     T      + R   ++ +RS+G   Q +    
Sbjct: 790 TLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLP 849

Query: 88  KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSG----GM---QR 139
             TV E + F + L+Q PK +++ E     V+  I   +  S A+ + G    G+   QR
Sbjct: 850 TSTVRESLRFSAYLRQ-PKSVSKSE-KMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQR 907

Query: 140 K-LSVAMAFIGGSRTVI-LDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTH-----YM 191
           K L++ +  +   + ++ LDEPTSG+D  +  SI +L+ K    G+ ++ T H       
Sbjct: 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILF 967

Query: 192 DEADLL 197
           +E D L
Sbjct: 968 EEFDRL 973

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 55.1 bits (133), Expect = 8e-09
 Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 25/225 (11%)

Query: 20  LNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI-RTDMTTIRRSLGV 78
           LN++    +    +G +G+GK+T   +L  +     G   +   D+   D   +RR +GV
Sbjct: 476 LNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGV 535

Query: 79  CPQYNALFDKLTVE-----------EHMWFYSQLKQVPKDLAQL-EISNMIVDLGIPHKR 126
             Q N LF +   +           EH+   ++L      +++L +  N  V        
Sbjct: 536 VLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVG------- 588

Query: 127 TSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVIL 186
                 LSGG ++++++A A +G  R +I DE TS +D  S   I   + +  +GRTVI+
Sbjct: 589 -EKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVII 647

Query: 187 TTHYMDEADLLGDRIAIIAAGKLQCCGSS---VFLKNSFARGYYL 228
             H +       DRI ++  G++   G     + L+  +AR +  
Sbjct: 648 IAHRLS-TVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQQ 691

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 54.8 bits (132), Expect = 9e-09
 Identities = 50/216 (23%), Positives = 93/216 (43%), Gaps = 31/216 (14%)

Query: 17  VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH----DIRTDMTTI 72
           V+ ++ +    +I    G  GAG+T  +  L G  P       ++ +    DIR     I
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP-GKFEGNVFINGKPVDIRNPAQAI 334

Query: 73  RRSL----------GVCPQYN-------ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISN 115
           R  +          G+ P          ++      +  +   ++L+ +   + +L++  
Sbjct: 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT 394

Query: 116 MIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
               L I          LSGG Q+K  +A   +   R +ILDEPT GVD  ++  I++L+
Sbjct: 395 ASPFLPI--------GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLI 446

Query: 176 IKY-KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
            +  ++G  +I+ +  + E   L DR+ +I  GKL+
Sbjct: 447 NQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLK 482

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 54.2 bits (130), Expect = 9e-09
 Identities = 49/227 (21%), Positives = 105/227 (46%), Gaps = 18/227 (7%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           + + +L KR+   ++ + G+++      + S +G +G+GK+T +  +  +   S G+  +
Sbjct: 6   LNVIDLHKRYGEHEV-LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVV 64

Query: 61  YNHDIR--------------TDMTTIRRSLGVCPQYNALFDKLTVEEH-MWFYSQLKQVP 105
               I                 +  +R  L +  Q+  L+  +TV E+ M    Q+  + 
Sbjct: 65  NGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLS 124

Query: 106 KDLAQLEISNMIVDLGIPHK-RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD 164
           K  A+      +  +GI  + +      LSGG Q+++S+A A       ++ DEPTS +D
Sbjct: 125 KQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALD 184

Query: 165 PYSRRSIWELLIKY-KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
           P     +  ++ +  ++G+T+++ TH M  A  +   +  +  GK++
Sbjct: 185 PELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231

Length = 257

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 49/221 (22%), Positives = 102/221 (46%), Gaps = 17/221 (7%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           + ++ + K F   K A++G+++     +     G NGAGK+T + +L G+ P  +   +I
Sbjct: 2   LEMKGIVKTFGGVK-ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI 60

Query: 61  Y-------NHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL----KQVPKDLA 109
           Y         +IR    T R  + +  Q   L  +L+V E+++  +++     ++  +  
Sbjct: 61  YWSGSPLKASNIR---DTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAM 117

Query: 110 QLEISNMIVDLGIPHKRTSLA-NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR 168
            L   N++ +L +     +       GG Q+ + +A A    +R +ILDEP+S +     
Sbjct: 118 YLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKET 177

Query: 169 RSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGK 208
             + +++   K  G   +  +H ++E   + D I +I  G+
Sbjct: 178 EILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 60/230 (26%), Positives = 110/230 (47%), Gaps = 29/230 (12%)

Query: 3   IQNLSKRF--PNGKL-AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP---VSSG 56
           +++L   F  P+G + AVN LN +    +    +G +G+GK+ T   LMG+L       G
Sbjct: 15  VKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGG 74

Query: 57  TAKIYNHDI----RTDMTTIRRSLGVCPQYNALF-DKLT-VEEHMWFYSQL-------KQ 103
           +A     +I      ++  +R       Q + +F D +T +  +M    QL       K 
Sbjct: 75  SATFNGREILNLPEKELNKLRAE-----QISMIFQDPMTSLNPYMRVGEQLMEVLMLHKG 129

Query: 104 VPKDLAQLEISNMIVDLGIP--HKRTSL-ANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160
           + K  A  E   M+  + +P   KR  +  +  SGGM++++ +AMA +   + +I DEPT
Sbjct: 130 MSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPT 189

Query: 161 SGVDPYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGK 208
           + +D   +  I  LL + K+     +I+ TH +     + D++ ++ AG+
Sbjct: 190 TALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGR 239

Length = 330

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 57/240 (23%), Positives = 107/240 (44%), Gaps = 41/240 (17%)

Query: 1   MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
           ++I+NLS  F        AV G++ +    +  + +G +G+GK+ T   ++G+LP  S  
Sbjct: 7   LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLP--SPA 64

Query: 58  AKIYNHDIRTDMTTIRRSLGVCP-QYNALF-DKLTV--EEHMWFYSQLKQVPKDLAQL-- 111
           A   +  I  D   +   L     Q   +  +K+ +  +E M   + L  + K LA++  
Sbjct: 65  AAHPSGSILFDGEDL---LAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLR 121

Query: 112 ------------EISNMIVDLGIPHKRTSLA---NTLSGGMQRKLSVAMAFIGGSRTVIL 156
                           ++  +GIP     L    + LSGG ++++ +AMA       +I 
Sbjct: 122 LHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIA 181

Query: 157 DEPTSGVDPYSRRSIWELL--IKYKKGRTVILTTHYMDEADL-----LGDRIAIIAAGKL 209
           DEPT+ +D   +  I +LL  ++ + G  ++  TH     DL       DR+ ++  G++
Sbjct: 182 DEPTTALDVTVQAQILDLLKELQAELGMAILFITH-----DLGIVRKFADRVYVMQHGEI 236

Length = 534

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 53.5 bits (128), Expect = 2e-08
 Identities = 43/192 (22%), Positives = 85/192 (44%), Gaps = 15/192 (7%)

Query: 14  KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI-RTDMTTI 72
                 L V   +   T+ +G NG GK+T +  L  ++  + G   +    I       +
Sbjct: 20  YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEV 79

Query: 73  RRSLGVCPQYNALFDKLTVEE--------HMWFYSQLKQVPKDLAQLEISNMIVDLGIPH 124
            R +G+  Q       +TV+E        H   +++ ++  ++     ++  +   GI H
Sbjct: 80  ARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEE----AVTKAMQATGITH 135

Query: 125 KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKGR 182
                 +TLSGG +++  +AM     +  ++LDEPT+ +D   +  + ELL  +  +KG 
Sbjct: 136 LADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGY 195

Query: 183 TVILTTHYMDEA 194
           T+    H +++A
Sbjct: 196 TLAAVLHDLNQA 207

Length = 265

>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 52/215 (24%), Positives = 97/215 (45%), Gaps = 26/215 (12%)

Query: 17  VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP----VSSGT----------AKIYN 62
           V+G+++     ++ + +G +G+GK+ T +  +G+LP     ++G             +  
Sbjct: 19  VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRG 78

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
             I T M   R +      +N L    T+  H          P D A L  +   V L  
Sbjct: 79  RKIATIMQNPRSA------FNPL---HTMHTHARETCLALGKPADDATLTAALEAVGLEN 129

Query: 123 PHKRTSL-ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYK 179
             +   L    +SGGM +++ +A+A +  +  +I DEPT+ +D  ++  I +LL  I  K
Sbjct: 130 AARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK 189

Query: 180 KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           +   ++L TH M     L D +A+++ G++   G 
Sbjct: 190 RALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGD 224

Length = 254

>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 133 LSGGMQRKLSVAMAF----IGGSRTVILDEPTSGVDPYSRRSIWELLIK-YKKGRTVILT 187
           LSGG +   ++A+      +      ILDE   G+DP   +++ E +++   KG  VI+ 
Sbjct: 78  LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137

Query: 188 THYMDEADLLGDRIAII 204
           TH  + A+L  D++  I
Sbjct: 138 THLPELAELA-DKLIHI 153

ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 48/203 (23%), Positives = 93/203 (45%), Gaps = 10/203 (4%)

Query: 4   QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
           ++++  F N    V  ++      Q  + +G  GAGKTT I++L  +   + G   I   
Sbjct: 338 RHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGI 397

Query: 64  DIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWF---YSQLKQVPKDLAQLEISNMIVD 119
           DI T    ++R+S+    Q   LF++ ++ E++      +  ++V +        + I+ 
Sbjct: 398 DINTVTRESLRKSIATVFQDAGLFNR-SIRENIRLGREGATDEEVYEAAKAAAAHDFILK 456

Query: 120 L--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK 177
              G         N LSGG +++L++A A +  +  ++LDE TS +D  +   +   +  
Sbjct: 457 RSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDA 516

Query: 178 YKKGRTVILTTHYMD---EADLL 197
            +K RT  +  H +     ADL+
Sbjct: 517 LRKNRTTFIIAHRLSTVRNADLV 539

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 49/187 (26%), Positives = 92/187 (49%), Gaps = 11/187 (5%)

Query: 33  LGHNGAGKTTTISMLMGMLPVSSGTAKIYNH--DIRTDMTT-----IRRSLG-VCPQYNA 84
           LG +GAGK++ + +L  +    SGT  I  +  D     +      +RR++G V  QYN 
Sbjct: 34  LGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN- 92

Query: 85  LFDKLTVEEHMWFYS-QLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSV 143
           L+  LTV+E++     ++  + KD A      ++  L +          LSGG Q+++++
Sbjct: 93  LWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAI 152

Query: 144 AMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIA 202
           A A +   + ++ DEPT+ +DP     I  ++ +  + G T ++ TH ++ A     R+ 
Sbjct: 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVV 212

Query: 203 IIAAGKL 209
            +  G +
Sbjct: 213 YMENGHI 219

Length = 242

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 52.5 bits (126), Expect = 4e-08
 Identities = 50/227 (22%), Positives = 100/227 (44%), Gaps = 22/227 (9%)

Query: 3   IQNLSKRFPNGKL--------AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS 54
           +++++  +  G L         +  ++++  E +    LG +G GK+T   +L+G+   +
Sbjct: 5   VRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA 64

Query: 55  SGTAKIYNHDI----RTDMTTIRRSLGVCPQ--YNALFDKLTVE----EHMWFYSQLKQV 104
            GT      D+    R      RR + +  Q   +A+  ++TV     E +   + L + 
Sbjct: 65  QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDES 124

Query: 105 PKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD 164
            +     E+ +M V L        L   LSGG  +++++A A     + ++LDE  S +D
Sbjct: 125 EQKARIAELLDM-VGLRSEDAD-KLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLD 182

Query: 165 PYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
              +  I ELL K ++  G   +  TH +        R+A++  G++
Sbjct: 183 MVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQI 229

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 51.8 bits (124), Expect = 8e-08
 Identities = 24/75 (32%), Positives = 42/75 (56%)

Query: 133 LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMD 192
           LSGG Q++L +A         +++DEP S +DP +   I +L+ +  +  TV++ TH M 
Sbjct: 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQ 260

Query: 193 EADLLGDRIAIIAAG 207
           +A  + D+ A+   G
Sbjct: 261 QAARISDQTAVFLTG 275

Length = 305

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 52.2 bits (125), Expect = 9e-08
 Identities = 61/240 (25%), Positives = 106/240 (44%), Gaps = 40/240 (16%)

Query: 15  LAVNGLNVNFYEDQIT-------SF----------LGHNGAGKTTTISMLMGMLPVSSGT 57
           LAV  LN+ F ++Q         SF          +G +G+GK+ T   LM +L  + G 
Sbjct: 13  LAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGL 72

Query: 58  AKIYNHDIR--------------TDMTTIRRS-LGVCPQ--YNALFDKLTVEEHMWFYSQ 100
            +     +R                M  +R + + +  Q    +L    TV E +    +
Sbjct: 73  VQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIR 132

Query: 101 LKQ-VPKDLAQLEISNMIVDLGIPHKRTSLA---NTLSGGMQRKLSVAMAFIGGSRTVIL 156
           L Q   ++ A +E   M+  + IP  +T L+   + LSGGM++++ +AMA       +I 
Sbjct: 133 LHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIA 192

Query: 157 DEPTSGVDPYSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           DEPT+ +D   +  I +L+  ++ +    VI  TH M     + DR+ ++  G+    GS
Sbjct: 193 DEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGS 252

Length = 623

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 50/212 (23%), Positives = 96/212 (45%), Gaps = 24/212 (11%)

Query: 17  VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR-TDMTTIRRS 75
           ++G++++  E  +   +G NGAGKTT +  + G L  ++GT  +   D+         R 
Sbjct: 19  LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR 78

Query: 76  LGVCPQYNAL---FDKLTVEE-----HM-----WFYSQLKQVPKDLAQLEISNMIVDLGI 122
           +   PQ  +L   FD   V E     H      W  +    V + + +  ++    D  +
Sbjct: 79  VASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQF-ADRPV 137

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKG 181
                    +LSGG ++++ +A A    +  ++LDEPT+ +D   +    EL+ +    G
Sbjct: 138 --------TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDG 189

Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213
           +T +   H +D A    D + ++A G+++  G
Sbjct: 190 KTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221

Length = 402

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 24/224 (10%)

Query: 4   QNLSKRFPN--GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           Q++S  +PN      + GL    +  ++ + +G +G+GK+T  ++L  +   + G   + 
Sbjct: 482 QDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLD 541

Query: 62  NHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
              +   D   + R + +  Q   LF   +V E++ +   L   P +    EI       
Sbjct: 542 GVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAY--GLTDTPDE----EIMAAAKAA 594

Query: 121 GIPHKRTSLANT-----------LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRR 169
                     N            LSGG ++++++A A +   R +ILDE TS +D    +
Sbjct: 595 NAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQ 654

Query: 170 SIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213
            + E   + +  RTV+L  H +   +   D+I ++  G +   G
Sbjct: 655 LLQES--RSRASRTVLLIAHRLSTVE-RADQILVLKKGSVVEMG 695

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 48/202 (23%), Positives = 95/202 (47%), Gaps = 21/202 (10%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           + + +++  + NG  A+   +       I + +G NG+GK+T    LMG + ++SG   I
Sbjct: 7   IVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISI 66

Query: 61  YNHDIRTDMTTIRRSL-GVCPQYNAL---FDKLTVEE--------HMWFYSQLKQVPKDL 108
                R     ++++L    PQ   +   F  L VE+        HM +     +  K  
Sbjct: 67  LGQPTRQ---ALQKNLVAYVPQSEEVDWSFPVL-VEDVVMMGRYGHMGWL----RRAKKR 118

Query: 109 AQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR 168
            +  ++  +  + +   R      LSGG ++++ +A A     + ++LDEP +GVD  + 
Sbjct: 119 DRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTE 178

Query: 169 RSIWELLIKYK-KGRTVILTTH 189
             I  LL + + +G+T++++TH
Sbjct: 179 ARIISLLRELRDEGKTMLVSTH 200

Length = 272

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 53/190 (27%), Positives = 97/190 (51%), Gaps = 19/190 (10%)

Query: 33  LGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTV 91
           +G +G+GK+T   +L+G+ P +SG+ ++   D+R  D   + R +G  PQ   LFD  T+
Sbjct: 368 IGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TI 426

Query: 92  EEH---MWFYSQLKQVPKDLAQL-EISNMIVDLGIPHK-RTSLAN---TLSGGMQRKLSV 143
            E+       +  ++V +  A+L  +  +I+ L  P    T +     TLSGG ++++++
Sbjct: 427 AENIARFGEEADPEKVIE-AARLAGVHELILRL--PQGYDTRIGEGGATLSGGQRQRIAL 483

Query: 144 AMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADLLG--DR 200
           A A  G    V+LDEP S +D     ++   ++  K  G TV++  H       L   D+
Sbjct: 484 ARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH---RPSALASVDK 540

Query: 201 IAIIAAGKLQ 210
           I ++  G++ 
Sbjct: 541 ILVLQDGRIA 550

Length = 580

>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 31/182 (17%)

Query: 20  LNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD------MTTIR 73
           L++ F    IT   G NG GK++ + M+ G++  SSG   IY  +   +       T I 
Sbjct: 19  LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSG--NIYYKNCNINNIAKPYCTYIG 76

Query: 74  RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLAN- 131
            +LG       L  ++TV E++ F+S++            S   +   I + K   L + 
Sbjct: 77  HNLG-------LKLEMTVFENLKFWSEIYN----------SAETLYAAIHYFKLHDLLDE 119

Query: 132 ---TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL-IKYKKGRTVILT 187
              +LS GMQ+ +++A      S   +LDE  + +   +R  +  L+ +K   G  V+L+
Sbjct: 120 KCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLS 179

Query: 188 TH 189
           +H
Sbjct: 180 SH 181

Length = 195

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 47/233 (20%), Positives = 102/233 (43%), Gaps = 39/233 (16%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           ++N++ R    K  V  ++ +    +I  F G  G+G+T  ++ L G+   + G  ++  
Sbjct: 268 VRNVTSR-DRKK--VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNG 324

Query: 63  HDI--RTDMTTIRRSLGVCPQY---NALFDKLTVEEHMWFYSQLK--------------- 102
            DI  R+ +  +++ +    +    N  F   ++ ++M     LK               
Sbjct: 325 KDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVD 384

Query: 103 -----QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157
                +  ++L  L+  +  V+  I          LSGG Q+K+ ++         +I D
Sbjct: 385 EQRTAENQRELLALKCHS--VNQNI--------TELSGGNQQKVLISKWLCCCPEVIIFD 434

Query: 158 EPTSGVDPYSRRSIWELLIKY-KKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           EPT G+D  ++  I++++ +    G+ +++ +  + E   + DRIA+   G+L
Sbjct: 435 EPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRL 487

Length = 510

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 46/198 (23%), Positives = 99/198 (50%), Gaps = 7/198 (3%)

Query: 17   VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI-RTDMTTIRRS 75
            ++GL+      +    +G  GAGK++ ++ L  ++ +  G   I + D+ +  +T +RR 
Sbjct: 1252 LHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV 1311

Query: 76   LGVCPQYNALFDKLTVEEHMWFYSQLKQVP--KDLAQLEISNMIVD--LGIPHKRTSLAN 131
            L + PQ   LF   TV  ++  +S+       + L +  I ++I     G+  + +    
Sbjct: 1312 LSIIPQSPVLFSG-TVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGE 1370

Query: 132  TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYM 191
              S G ++ LS+A A +  S+ ++LDE T+ VD  +   I   + +  K  T+++  H +
Sbjct: 1371 NFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRL 1430

Query: 192  DEADLLGDRIAIIAAGKL 209
            +   +  D+I ++++G++
Sbjct: 1431 NTI-IDCDKILVLSSGQV 1447

Length = 1495

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 17/138 (12%)

Query: 34  GHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVE 92
           G NGAGKTT + +L G+L V SG  +I        D +     LG  P    L   L+  
Sbjct: 44  GDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLP---GLKADLSTL 100

Query: 93  EHMWFYSQL-----KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF 147
           E++ F   L     KQ+P         + +  +G+     +L   LS G +++L++A  +
Sbjct: 101 ENLHFLCGLHGRRAKQMP--------GSALAIVGLAGYEDTLVRQLSAGQKKRLALARLW 152

Query: 148 IGGSRTVILDEPTSGVDP 165
           +  +   +LDEP + +D 
Sbjct: 153 LSPAPLWLLDEPYANLDL 170

Length = 214

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 52/202 (25%), Positives = 99/202 (49%), Gaps = 30/202 (14%)

Query: 21  NVNFYEDQITSFL---GHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLG 77
           N+N  +  + S +   G  G GKT+ IS ++G LP  S  +             IR ++ 
Sbjct: 635 NINL-DVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDAS-----------VVIRGTVA 682

Query: 78  VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI-P-HKRTSLAN---T 132
             PQ + +F+  TV +++ F S       + A ++++ +  DL + P    T +      
Sbjct: 683 YVPQVSWIFNA-TVRDNILFGSPFDPERYERA-IDVTALQHDLDLLPGGDLTEIGERGVN 740

Query: 133 LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTT--- 188
           +SGG ++++S+A A    S   I D+P S +D +  R +++  IK + +G+T +L T   
Sbjct: 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQL 800

Query: 189 HYMDEADLLGDRIAIIAAGKLQ 210
           H++ +     DRI ++  G ++
Sbjct: 801 HFLSQV----DRIILVHEGMIK 818

Length = 1622

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 43/199 (21%), Positives = 86/199 (43%), Gaps = 40/199 (20%)

Query: 14  KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTI 72
             A+  +N      +  + +G +G+GK+T  ++L     +  G   +  HD+R   + ++
Sbjct: 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASL 415

Query: 73  RRSLGVCPQYNALF-------------DKLTVEE---------HMWFYSQLKQVPKDLAQ 110
           R  + +  Q   LF             ++ + E+          M F +++         
Sbjct: 416 RNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNG------ 469

Query: 111 LEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
             +  +I + G+          LSGG ++++++A A +  S  +ILDE TS +D  S R+
Sbjct: 470 --LDTVIGENGV---------LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 518

Query: 171 IWELLIKYKKGRTVILTTH 189
           I   L + +K RT ++  H
Sbjct: 519 IQAALDELQKNRTSLVIAH 537

Length = 582

>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 50/220 (22%), Positives = 92/220 (41%), Gaps = 30/220 (13%)

Query: 4   QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
           +N++  + +   +V  +N+     ++   +G NG+GK+T   +L G+    SG  +I   
Sbjct: 326 RNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSG--EILLD 383

Query: 64  DIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL-----KQVPKDLAQ--LEISNM 116
                             Y  LF    V      + QL     K     L +  LE   M
Sbjct: 384 GKPVTAEQPED-------YRKLFS--AVFTDFHLFDQLLGPEGKPANPALVEKWLERLKM 434

Query: 117 IVDLGIPHKRTSLANT-LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
              L +   R  ++N  LS G +++L++ +A       ++LDE  +  DP+ RR  +++L
Sbjct: 435 AHKLELEDGR--ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVL 492

Query: 176 IKY--KKGRTVILTTH---YMDEADLLGDRIAIIAAGKLQ 210
           +    + G+T+   +H   Y   A    DR+  +  G+L 
Sbjct: 493 LPLLQEMGKTIFAISHDDHYFIHA----DRLLEMRNGQLS 528

Length = 547

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 27/211 (12%)

Query: 10  FPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM 69
           + +    V  +N+     ++   +G NG+GK+T   +L G+    SG        I  D 
Sbjct: 332 YQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGE-------ILLDG 384

Query: 70  TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-ISNMIVDLGIPHKRT- 127
             +  S      Y  LF    V      + QL   P+  A  + I   +  L + HK + 
Sbjct: 385 KPV--SAEQLEDYRKLFS--AVFSDYHLFDQLLG-PEGKASPQLIEKWLQRLELAHKTSL 439

Query: 128 ---SLANT-LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK--G 181
                +N  LS G +++L++ +A +     ++LDE  +  DP  RR  +++L+   K  G
Sbjct: 440 NDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQG 499

Query: 182 RTVILTTH---YMDEADLLGDRIAIIAAGKL 209
           +T+   +H   Y   A    DR+  +  G+L
Sbjct: 500 KTIFAISHDDHYFIHA----DRLLEMRNGQL 526

Length = 546

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 33/164 (20%)

Query: 28  QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD 87
            +T+ +G +GAGKTT + +L G       T +I  +    D    +RS G   Q +    
Sbjct: 34  TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKN-FQRSTGYVEQQDVHSP 92

Query: 88  KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMA 146
            LTV E                 L  S ++  L +   KR ++   L          A  
Sbjct: 93  NLTVRE----------------ALRFSALLRGLSVEQRKRLTIGVEL---------AAKP 127

Query: 147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTH 189
            I     + LDEPTSG+D  +  +I   L K    G+ ++ T H
Sbjct: 128 SI-----LFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIH 166

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 41/168 (24%), Positives = 79/168 (47%), Gaps = 11/168 (6%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           + ++ + K FP  K A++G  +N Y  ++ + +G NGAGK+T + +L G+    +G+  I
Sbjct: 5   LQLKGIDKAFPGVK-ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGS--I 61

Query: 61  YNHDIRTDMTTIRRS----LGVCPQYNALFDKLTVEEHMW----FYSQLKQVPKDLAQLE 112
                       + S    +G+  Q   L  +LT+ E+++    F ++  ++       E
Sbjct: 62  LYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAE 121

Query: 113 ISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160
              ++  L +      L   LS G Q+ + +A      S+ +I+DEPT
Sbjct: 122 ADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPT 169

Length = 501

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 53/219 (24%), Positives = 100/219 (45%), Gaps = 21/219 (9%)

Query: 4   QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY-- 61
           +N++K F   K A++ +++     +I S  G NGAGK+T + +L G+ P  +   +I   
Sbjct: 9   KNITKTFGGVK-ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFE 67

Query: 62  -----NHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ---VPKDLAQLEI 113
                  +IR    T R  + +  Q  AL  +L+V E+++  +++     +  D   L  
Sbjct: 68  GEELQASNIR---DTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRA 124

Query: 114 SNMIVDLGI---PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
             ++  L +   P         L  G Q+ + +A A    +R +ILDEPT+ +       
Sbjct: 125 QKLLAQLKLDINPATPVG---NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAV 181

Query: 171 IWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGK 208
           + +++   K  G   I  +H ++E   + D I +I  G+
Sbjct: 182 LLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220

Length = 506

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 7/169 (4%)

Query: 28  QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIR-----RSLGVCPQY 82
           +  + +G +G+GK+T +++L G+   SSG   +    +       R     + +G   Q 
Sbjct: 37  ETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQS 96

Query: 83  NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLS 142
             L   L   E++   + L+      ++     ++  LG+  +   L   LSGG Q++++
Sbjct: 97  FMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVA 156

Query: 143 VAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK--GRTVILTTH 189
           +A AF G    +  DEPT  +D  +   I +LL    +  G T+IL TH
Sbjct: 157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTH 205

Length = 228

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 49.8 bits (119), Expect = 5e-07
 Identities = 54/258 (20%), Positives = 106/258 (41%), Gaps = 52/258 (20%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM------------ 50
           ++NL+K+F +GK  +  ++    E ++   LG +GAGK+  + +L GM            
Sbjct: 3   VKNLTKKF-DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIY 61

Query: 51  --------------------LPVSSGTAKIYNHDI----RTDMTTIRRSLGVCPQYN-AL 85
                                PV  GT +    D           IR+ + +  Q   AL
Sbjct: 62  HVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFAL 121

Query: 86  FDKLTVEE------HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQR 139
           +   TV +          Y   + V + +  +E+  +       H+ T +A  LSGG ++
Sbjct: 122 YGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL------SHRITHIARDLSGGEKQ 175

Query: 140 KLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK--YKKGRTVILTTHYMDEADLL 197
           ++ +A          + DEPT  +DP + + +   L +     G +++LT+H+ +  + L
Sbjct: 176 RVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDL 235

Query: 198 GDRIAIIAAGKLQCCGSS 215
            D+   +  G+++  G+ 
Sbjct: 236 SDKAIWLENGEIKEEGTP 253

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 26/226 (11%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMG--MLPVSSGTAKI 60
           I++L       K  + G+N+   + +I + +G NG+GK+T    + G     V+SGT   
Sbjct: 3   IKDLHVSV-EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILF 61

Query: 61  YNHDIRTDMTTIRRS---LGVCPQY--------NALFDKLTVEEHMWFYSQLKQVPKDLA 109
              D+  ++    R+   L +  QY        N  F +  +       S   + P DL 
Sbjct: 62  KGQDL-LELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARR---SARGEEPLDLL 117

Query: 110 QL--EISNMIVDLGIPHK--RTSLANTLSGGMQRKLSV-AMAFIGGSRTVILDEPTSGVD 164
                +   +  LG+  +    S+    SGG +++  +  MA +   +  ILDE  SG+D
Sbjct: 118 DFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALL-EPKLAILDEIDSGLD 176

Query: 165 PYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLG-DRIAIIAAGK 208
             + + + E + + +   R+ ++ THY    + +  D + ++  G+
Sbjct: 177 IDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGR 222

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 48.2 bits (115), Expect = 8e-07
 Identities = 50/202 (24%), Positives = 95/202 (47%), Gaps = 40/202 (19%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           ++++N+S  F   ++ ++ +++     +I + LG NGAGK+T + +++G++    G  K 
Sbjct: 5   VSLENVSVSFGQRRV-LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK- 62

Query: 61  YNHDIRTDMTTIRRSLGVCPQYNALFDK---LTVEEHMWFYSQLKQVPKDLAQLEISNMI 117
            N  +R         +G  PQ   L D    LTV   +    +L+   K           
Sbjct: 63  RNGKLR---------IGYVPQKLYL-DTTLPLTVNRFL----RLRPGTKK---------- 98

Query: 118 VDLGIPHKRTSLAN-------TLSGG-MQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRR 169
            D+    KR    +        LSGG  QR L +A A +   + ++LDEPT GVD   + 
Sbjct: 99  EDILPALKRVQAGHLIDAPMQKLSGGETQRVL-LARALLNRPQLLVLDEPTQGVDVNGQV 157

Query: 170 SIWELL--IKYKKGRTVILTTH 189
           ++++L+  ++ +    V++ +H
Sbjct: 158 ALYDLIDQLRRELDCAVLMVSH 179

Length = 251

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 133 LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY--KKGRTVILTTHY 190
           LSGG ++++++A A I     ++LDEP   +D  +R  + +L+     + G TV+L TH 
Sbjct: 134 LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193

Query: 191 MDEADLLGDRIAIIAAGKL 209
           + EA  + DR+ +I  GK+
Sbjct: 194 VSEAVAMADRVLLIEEGKI 212

Length = 257

>gnl|CDD|222036 pfam13304, AAA_21, AAA domain

 Score = 48.2 bits (114), Expect = 9e-07
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 133 LSGGMQRKLSVAMAFI---GGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTT 188
           +S G +R L++ +A +        +++DEP +G+ P   R + ELL +  +KG  +I TT
Sbjct: 190 ISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTT 249

Query: 189 H 189
           H
Sbjct: 250 H 250

Length = 256

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 55/227 (24%), Positives = 98/227 (43%), Gaps = 55/227 (24%)

Query: 1    MAIQN--LSKRFPN-GKLAVNGLNVNFYED---------------QITSFLGHNGAGKTT 42
            + I+N    K +P+ G++ V GL   + E                Q    LG  G+GK+T
Sbjct: 1201 LVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKST 1260

Query: 43   TISMLMGMLPVSSGTAKIYNHDIRTDMTTI---RRSLGVCPQ----YNALFDK------- 88
             +S L+ +L   S   +I    +  +  T+   R++ GV PQ    ++  F K       
Sbjct: 1261 LLSALLRLL---STEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQ 1317

Query: 89   ------LTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLS 142
                    V E +   S ++Q P  L       ++VD G           LS G ++ + 
Sbjct: 1318 WSDEEIWKVAEEVGLKSVIEQFPDKL-----DFVLVDGGY---------VLSNGHKQLMC 1363

Query: 143  VAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTH 189
            +A + +  ++ ++LDEP++ +DP + + I + L +     TVIL+ H
Sbjct: 1364 LARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEH 1410

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 58/239 (24%), Positives = 95/239 (39%), Gaps = 60/239 (25%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           ++++S   P GKL V               LG  G+GK+T +  L+    +S G      
Sbjct: 676 LRDVSVSVPRGKLTV--------------VLGATGSGKSTLLQSLLSQFEISEGR----- 716

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ-----------LKQVPKDLAQL 111
                      RS+   PQ  A     TV  ++ F+ +           + Q+  DLAQL
Sbjct: 717 -------VWAERSIAYVPQ-QAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQL 768

Query: 112 ------EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDP 165
                 EI    V+             LSGG + ++S+A A        +LD+P S +D 
Sbjct: 769 GGGLETEIGEKGVN-------------LSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815

Query: 166 Y-SRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV-FLKNSF 222
           +   R + E  +    G+T +L TH +       D +  +  G+++  GSS  F++ S 
Sbjct: 816 HVGERVVEECFLGALAGKTRVLATHQVHVVP-RADYVVALGDGRVEFSGSSADFMRTSL 873

Length = 1560

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 47/206 (22%), Positives = 87/206 (42%), Gaps = 33/206 (16%)

Query: 29  ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT----DMTTIRRSLGVCPQYNA 84
           I   +G NGAGK+T ++ + G+LP  SG+ +     +      ++   R  L    Q   
Sbjct: 24  ILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYL--SQQQTP 80

Query: 85  LFDKLTVEEHMWFYSQLKQ---VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKL 141
            F        ++ Y  L Q      +     ++ +   LG+  K     N LSGG  +++
Sbjct: 81  PFAM-----PVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRV 135

Query: 142 SVAMAFIGGSRTV-------ILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTHYMDE 193
            +A   +     +       +LDEP + +D   + ++  LL +  ++G  V++++H    
Sbjct: 136 RLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSH---- 191

Query: 194 ADL-----LGDRIAIIAAGKLQCCGS 214
            DL       DR+ ++  GKL   G 
Sbjct: 192 -DLNHTLRHADRVWLLKQGKLLASGR 216

Length = 248

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 45/183 (24%), Positives = 73/183 (39%), Gaps = 21/183 (11%)

Query: 23  NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQY 82
           +  E ++   LG NG GKTT I ML G+L    G       DI  ++ T+       PQY
Sbjct: 21  SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEG-------DIEIELDTVSYK----PQY 69

Query: 83  NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLS 142
                + TV +     S + +        + + +   L I          LSGG  ++++
Sbjct: 70  IKADYEGTVRD---LLSSITKDFYTHPYFK-TEIAKPLQIEQILDREVPELSGGELQRVA 125

Query: 143 VAMAFIGGSRTVILDEPTSGVDPYSR----RSIWELLIKYKKGRTVILTTHYMDEADLLG 198
           +A      +   +LDEP++ +D   R    + I       +K   V+     M   D L 
Sbjct: 126 IAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIM--IDYLA 183

Query: 199 DRI 201
           DR+
Sbjct: 184 DRL 186

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 57/239 (23%), Positives = 105/239 (43%), Gaps = 41/239 (17%)

Query: 1   MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
           +AI+NLS  F      +  VN +++     +  + +G +G+GK+ T   ++ +LP     
Sbjct: 6   LAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSP--- 62

Query: 58  AKIYNH-DIR--------TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDL 108
             +Y   DIR            T+R   G   +   +F     +E M   + L  + K L
Sbjct: 63  PVVYPSGDIRFHGESLLHASEQTLRGVRG--NKIAMIF-----QEPMVSLNPLHTLEKQL 115

Query: 109 AQL--------------EISNMIVDLGIPHKRTSLAN---TLSGGMQRKLSVAMAFIGGS 151
            ++              EI N +  +GI      L +    LSGG ++++ +AMA +   
Sbjct: 116 YEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRP 175

Query: 152 RTVILDEPTSGVDPYSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGK 208
             +I DEPT+ +D   +  I +LL  ++ +    ++  TH +     L DR+A++  G+
Sbjct: 176 ELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGR 234

Length = 529

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 49/202 (24%), Positives = 86/202 (42%), Gaps = 29/202 (14%)

Query: 6   LSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI 65
           L K + + KL V       Y+ ++   LG NG GKTT + +L G++    G+ +    D+
Sbjct: 348 LKKTYGDFKLEVEE--GEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEE----DL 401

Query: 66  RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIVDLGIPH 124
           +             PQY +     TVE      S ++        + EI      L +  
Sbjct: 402 KVSYK---------PQYISPDYDGTVE--DLLRSAIRSAFGSSYFKTEIVK---PLNLED 447

Query: 125 KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK---YKKG 181
                 + LSGG  +++++A A    +   +LDEP++ +D   +R I   +I+       
Sbjct: 448 LLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLD-VEQRIIVAKVIRRFIENNE 506

Query: 182 RTVILTTH--YMDEADLLGDRI 201
           +T ++  H  YM   D + DR+
Sbjct: 507 KTALVVDHDIYM--IDYVSDRL 526

Length = 591

>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 18/135 (13%)

Query: 86  FDKLTVEEHMWFYSQLKQVPKDLAQLEISN-------MIVDLGIPHKRTSLA-NTLSGGM 137
           F +++++E   F SQL    K L+  E+         +++DLG+P+     A  TLSGG 
Sbjct: 424 FQQMSLQELFIFLSQLP--SKSLSIEEVLQGLKSRLSILIDLGLPYLTPERALATLSGGE 481

Query: 138 QRKLSVAMAFIGGSR---TVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDE 193
           Q + ++A   +G      T ILDEP+ G+ P     +  ++ K + +G TV+L  H  DE
Sbjct: 482 QERTALA-KHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEH--DE 538

Query: 194 ADL-LGDRIAIIAAG 207
             + L DRI  I  G
Sbjct: 539 QMISLADRIIDIGPG 553

Length = 1809

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 47.2 bits (112), Expect = 4e-06
 Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 41/204 (20%)

Query: 21  NVNFY--EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGV 78
           N++F   + Q+ +  G  G+GK++ + M+MG L  S G  K   H  R         +  
Sbjct: 444 NISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIK---HSGR---------ISF 491

Query: 79  CPQY----------NALFDKLTVEEHMWFYSQLK--QVPKDLAQLEISNMIV--DLGIPH 124
            PQ           N +F  L+ +E+  + S +K  Q+ +D+A     +  V  + GI  
Sbjct: 492 SPQTSWIMPGTIKDNIIFG-LSYDEYR-YTSVIKACQLEEDIALFPEKDKTVLGEGGI-- 547

Query: 125 KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE-LLIKYKKGRT 183
                  TLSGG + ++S+A A    +   +LD P + +D  + + I+E  L K    +T
Sbjct: 548 -------TLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKT 600

Query: 184 VILTTHYMDEADLLGDRIAIIAAG 207
            IL T  ++      D+I ++  G
Sbjct: 601 RILVTSKLEHLK-KADKILLLHEG 623

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 47.1 bits (113), Expect = 4e-06
 Identities = 51/211 (24%), Positives = 84/211 (39%), Gaps = 45/211 (21%)

Query: 5   NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD 64
           +L+K+  +  L V G  +  YE ++   +G NG GKTT   +L G+L    G        
Sbjct: 345 DLTKKLGDFSLEVEGGEI--YEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV------ 396

Query: 65  IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLA----QLEISNMIVDL 120
                  ++ S    PQY      +  +        L+ +  DL     + EI      L
Sbjct: 397 ----DPELKIS--YKPQY------IKPDYDGTVEDLLRSITDDLGSSYYKSEIIK---PL 441

Query: 121 GIPHKRTSLANTLSGG-MQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR-------RSIW 172
            +          LSGG +QR +++A      +   +LDEP++ +D   R       R I 
Sbjct: 442 QLERLLDKNVKDLSGGELQR-VAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIA 500

Query: 173 ELLIKYKKGRTVILTTH--YMDEADLLGDRI 201
           E     ++  T ++  H  YM   D + DR+
Sbjct: 501 E-----EREATALVVDHDIYM--IDYISDRL 524

Length = 590

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 39/185 (21%)

Query: 29   ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-----MTTIRRSLGVCPQYN 83
            +T+ +G +GAGKTT + +L G       T      DIR         T  R  G C Q +
Sbjct: 908  LTALMGVSGAGKTTLMDVLAG-----RKTGGYIEGDIRISGFPKKQETFARISGYCEQND 962

Query: 84   ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD---------------LGIPHKRTS 128
                ++TV E +  YS   ++PK++++ E   M VD               +G+P     
Sbjct: 963  IHSPQVTVRESL-IYSAFLRLPKEVSKEE-KMMFVDEVMELVELDNLKDAIVGLPG---- 1016

Query: 129  LANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS----RRSIWELLIKYKKGRTV 184
                LS   +++L++A+  +     + +DEPTSG+D  +     R++   +     GRTV
Sbjct: 1017 -VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV---DTGRTV 1072

Query: 185  ILTTH 189
            + T H
Sbjct: 1073 VCTIH 1077

Length = 1470

>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C

 Score = 45.6 bits (108), Expect = 7e-06
 Identities = 56/236 (23%), Positives = 104/236 (44%), Gaps = 49/236 (20%)

Query: 1   MAIQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           M +++L+ ++  G  AV   ++ +    Q    LG  G+GK+T +S  + +L        
Sbjct: 3   MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEG---- 58

Query: 60  IYNHDIRTD--------MTTIRRSLGVCPQYNALF-----------------DKLTVEEH 94
               DI+ D        +   R++ GV PQ   +F                 +   V E 
Sbjct: 59  ----DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEE 114

Query: 95  MWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTV 154
           +   S ++Q P    QL+   ++VD G           LS G ++ + +A + +  ++ +
Sbjct: 115 VGLKSVIEQFP---GQLDF--VLVDGGC---------VLSHGHKQLMCLARSVLSKAKIL 160

Query: 155 ILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
           +LDEP++ +DP + + I + L +     TVIL+ H + EA L   R  +I   K++
Sbjct: 161 LLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRI-EAMLECQRFLVIEENKVR 215

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score = 45.6 bits (108), Expect = 7e-06
 Identities = 47/201 (23%), Positives = 91/201 (45%), Gaps = 35/201 (17%)

Query: 20  LNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC 79
           +N+   + ++ +  G  G+GKT+ + +++G L  S G  K   H  R         +   
Sbjct: 56  INLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIK---HSGR---------ISFS 103

Query: 80  PQYNALFDKLTVEEHMWF---YSQLK--------QVPKDLAQL-EISNMIVDLGIPHKRT 127
            Q++ +    T++E++ F   Y + +        Q+ +D+ +  E  N ++  G      
Sbjct: 104 SQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEG------ 156

Query: 128 SLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE-LLIKYKKGRTVIL 186
               TLSGG + ++S+A A    +   +LD P   +D ++ + I+E  + K    +T IL
Sbjct: 157 --GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRIL 214

Query: 187 TTHYMDEADLLGDRIAIIAAG 207
            T  M+      D+I I+  G
Sbjct: 215 VTSKMEHLK-KADKILILHEG 234

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 25/188 (13%)

Query: 17  VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR-TDMTTIRRS 75
           +NG++      +  + +G +GAGK+T + +L     V+SG+  I   DIR     ++RR+
Sbjct: 279 LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRA 338

Query: 76  LGVCPQYNALFD------------KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL--G 121
           +G+ PQ   LF+              T EE             + AQ  I + I  L  G
Sbjct: 339 IGIVPQDTVLFNDTIAYNIKYGRPDATAEE--------VGAAAEAAQ--IHDFIQSLPEG 388

Query: 122 IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKG 181
                      LSGG ++++++A   +     +ILDE TS +D ++ ++I   L +   G
Sbjct: 389 YDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAG 448

Query: 182 RTVILTTH 189
           RT ++  H
Sbjct: 449 RTTLVIAH 456

Length = 497

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 46.0 bits (110), Expect = 9e-06
 Identities = 56/198 (28%), Positives = 85/198 (42%), Gaps = 37/198 (18%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK-IY 61
           ++NL+K F NG L    LN+     +  + +G NG GKTT +  L+G L   SGT K   
Sbjct: 322 VENLTKGFDNGPL-FKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE 380

Query: 62  NHDIRTDMTTIRRSLGVCPQ-YNALFDK-LTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
           N +I           G   Q +   F+  LT+ + M   SQ +Q   D  Q  +      
Sbjct: 381 NANI-----------GYYAQDHAYDFENDLTLFDWM---SQWRQ-EGDDEQA-VRGT--- 421

Query: 120 LG--------IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI 171
           LG        I          LSGG + ++      +     +++DEPT+ +D  S  S+
Sbjct: 422 LGRLLFSQDDIKKS----VKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESL 477

Query: 172 WELLIKYKKGRTVILTTH 189
              L KY+   T+I  +H
Sbjct: 478 NMALEKYEG--TLIFVSH 493

Length = 530

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 52/211 (24%), Positives = 80/211 (37%), Gaps = 59/211 (27%)

Query: 28  QITSFLGHNGAGKTTTISMLMGML---------PVS--------SGT------AKIYNHD 64
           ++   LG NG GK+T + +L G L         P S         GT       K+Y  +
Sbjct: 101 KVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGE 160

Query: 65  IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH 124
           +R             PQY  L  K            +K    +L +        D  +  
Sbjct: 161 LRAVHK---------PQYVDLIPK-----------VVKGKVGELLKKVDERGKFDEVV-- 198

Query: 125 KRTSLANT-------LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR----RSIWE 173
           +R  L N        LSGG  +++++A A +  +     DEP+S +D   R    R I E
Sbjct: 199 ERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRE 258

Query: 174 LLIKYKKGRTVILTTHYMDEADLLGDRIAII 204
           L    + G+ VI+  H +   D L D + I+
Sbjct: 259 LA---EDGKYVIVVEHDLAVLDYLSDFVHIL 286

Length = 591

>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 5/95 (5%)

Query: 120 LGIPHKRTSL---ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI 176
           +GIP   + L    + LSGGM +++ +AMA     + +I DEPT+ +D   +  I ELL+
Sbjct: 138 VGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLL 197

Query: 177 --KYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
             + K+   ++L TH +        +I ++ AG++
Sbjct: 198 ELQQKENMALVLITHDLALVAEAAHKIIVMYAGQV 232

Length = 326

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 51/198 (25%), Positives = 94/198 (47%), Gaps = 24/198 (12%)

Query: 17  VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI---- 72
           ++ +N+     Q+T  +G  G GK++ +  ++G +    G  K++  +      +     
Sbjct: 17  LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEG--KVHWSNKNESEPSFEATR 74

Query: 73  ---RRSLGVCPQYNALFDKLTVEEHMWFYSQL-KQVPKDLAQLEISNMIVDLGI-PH-KR 126
              R S+    Q   L +  TVEE++ F S   KQ  K  A  +  ++  D+ + P   +
Sbjct: 75  SRNRYSVAYAAQKPWLLNA-TVEENITFGSPFNKQRYK--AVTDACSLQPDIDLLPFGDQ 131

Query: 127 TSLAN---TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY-SRRSIWELLIKYKKG- 181
           T +      LSGG ++++ VA A    +  V LD+P S +D + S   + E ++K+ +  
Sbjct: 132 TEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDD 191

Query: 182 -RTVILTTH---YMDEAD 195
            RT++L TH   Y+  AD
Sbjct: 192 KRTLVLVTHKLQYLPHAD 209

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 39/185 (21%), Positives = 67/185 (36%), Gaps = 37/185 (20%)

Query: 25  YEDQITSFLGHNGAGKTTTI-SMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYN 83
           +   +T  +G NGAGKTT I ++   +       +K   HD    +              
Sbjct: 20  FFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHD--PKLIREGEVRAQ----- 72

Query: 84  ALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMI----VDLGIPHKRTSLANTLSGGMQ 138
                  V+      +  K  + + LA LE          +  +   R       SGG +
Sbjct: 73  -------VKLAFENANGKKYTITRSLAILENVIFCHQGESNWPLLDMRG----RCSGG-E 120

Query: 139 R-------KLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY---KKGRTVILTT 188
           +       +L++A  F      + LDEPT+ +D  +       +I+    +K   +I+ T
Sbjct: 121 KVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVIT 180

Query: 189 HYMDE 193
           H  DE
Sbjct: 181 H--DE 183

The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 51/213 (23%), Positives = 93/213 (43%), Gaps = 31/213 (14%)

Query: 21  NVNFY--EDQITSFLGHNGAGKTTTISMLMGMLP-VSSGTAKIYNH--DIRTDMTTIRRS 75
           +V+F     +I    G  GAG+T  +  L G  P    G   I      IR     I + 
Sbjct: 280 DVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQG 339

Query: 76  LGVCP--------------QYN---ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIV 118
           + + P                N   A  D+ T    +   ++LK + + + +L++     
Sbjct: 340 IAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVK---- 395

Query: 119 DLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY 178
                    ++A  LSGG Q+K  +A   +   + +ILDEPT G+D  ++  I++L+ + 
Sbjct: 396 ---TASPELAIAR-LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQL 451

Query: 179 -KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
            ++G  +I+ +  + E   L DR+ ++  GKL+
Sbjct: 452 VQQGVAIIVISSELPEVLGLSDRVLVMHEGKLK 484

Length = 506

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 12/182 (6%)

Query: 4   QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
           + + KR  +  + V  ++      +    +G +G+GK+TT   L+ ++  S G       
Sbjct: 289 KGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQ 347

Query: 64  DI----RTDMTTIRRSLGVCPQ--YNALFDKLTVEEHMWFYSQLKQVPKDLAQLE---IS 114
            +    R  +  +R  + V  Q   ++L  +L V + +    ++ Q     AQ E   I+
Sbjct: 348 PLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIA 407

Query: 115 NMIVDLGI-PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
            M  ++G+ P  R       SGG ++++++A A I     +ILDEPTS +D   +  I  
Sbjct: 408 VM-EEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILA 466

Query: 174 LL 175
           LL
Sbjct: 467 LL 468

Length = 529

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 58/213 (27%), Positives = 93/213 (43%), Gaps = 60/213 (28%)

Query: 26  EDQITSFLGHNGAGKTTTISMLMGML---------PVS--------SGTA------KIYN 62
           E ++T  LG NG GKTT + +L G L           S         GT       K+YN
Sbjct: 98  EGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYN 157

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKL---TVEEHMWFYSQLKQVPK-----DLA-QLEI 113
            +I+     + +     PQY  L  K+    V E       LK+V +     ++  +L +
Sbjct: 158 GEIKV----VHK-----PQYVDLIPKVFKGKVRE------LLKKVDERGKLDEVVERLGL 202

Query: 114 SNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
            N I+D  I        + LSGG  +++++A A +  +     DEPTS +D   R ++  
Sbjct: 203 EN-ILDRDI--------SELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVAR 253

Query: 174 LLIKYKKGRTVILTTHYMDEA--DLLGDRIAII 204
           L+ +  +G+ V++  H  D A  D L D + I 
Sbjct: 254 LIRELAEGKYVLVVEH--DLAVLDYLADNVHIA 284

Length = 590

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 132 TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTH 189
            LSGG Q++L+ A   +   + V LDE TS +D  S   +++LL   + G TVI   H
Sbjct: 91  VLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL--KELGITVISVGH 146

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 52/234 (22%), Positives = 103/234 (44%), Gaps = 30/234 (12%)

Query: 1   MAIQNLSKRFP--NGKL--------AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM 50
           + ++NL  RFP  +G L        AV  ++ + +  +  S +G +G+GK+TT   L+ +
Sbjct: 314 LQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRL 373

Query: 51  LPVSSGTAKIYNHDIRT----DMTTIRRSLGVCPQ--YNALFDKLTVEEHMWFYSQLKQV 104
           +    G        I T     +  +RR +    Q  Y +L  + TV       S ++ +
Sbjct: 374 VESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVG-----DSIMEPL 428

Query: 105 ------PKDLAQLEISNMIVDLGI-PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157
                 P   A   ++ ++  +G+ P       +  SGG ++++ +A A     + +I D
Sbjct: 429 RVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIAD 488

Query: 158 EPTSGVDPYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           E  S +D   R  I  LL+  ++  G   +  +H M   + +  R+A++  G++
Sbjct: 489 EAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQI 542

Length = 623

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 58/235 (24%), Positives = 109/235 (46%), Gaps = 42/235 (17%)

Query: 2   AIQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
            +  ++ R+ P+G L ++ +++     +  + +G +G+GK+T + +L+G     SG+   
Sbjct: 453 EVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFY 512

Query: 61  YNHDIRT-DMTTIRRSLGVCPQYNALFD-----------KLTVEEHMWFYSQLKQVPKDL 108
              D+   D+  +RR LGV  Q   L              LT++E  W  +++  + +D 
Sbjct: 513 DGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDE-AWEAARMAGLAED- 570

Query: 109 AQLEISNM------IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSG 162
               I  M      ++  G          TLSGG +++L +A A +   R ++ DE TS 
Sbjct: 571 ----IRAMPMGMHTVISEG--------GGTLSGGQRQRLLIARALVRKPRILLFDEATSA 618

Query: 163 VDPYSRRSIWELLIKYKKGRTVI---LTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           +D  ++  + E L + K  R VI   L+T   +      DRI ++ AG++   G+
Sbjct: 619 LDNRTQAIVSESLERLKVTRIVIAHRLST-IRN-----ADRIYVLDAGRVVQQGT 667

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 37/199 (18%)

Query: 12  NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN---HDIRTD 68
               A+  +N      Q+    G  G+GK+T +S++     VS G  + ++     ++ D
Sbjct: 326 TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLD 385

Query: 69  MTTIRRSLGVCPQYNALFDKLTV------------EEHMWFYSQLKQVPKDLAQL----- 111
             + R  L V  Q   LF   TV            ++ +   ++L  V  D+ +L     
Sbjct: 386 --SWRSRLAVVSQTPFLFSD-TVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYD 442

Query: 112 -EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
            E+    V              LSGG ++++S+A A +  +  +ILD+  S VD  +   
Sbjct: 443 TEVGERGV-------------MLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQ 489

Query: 171 IWELLIKYKKGRTVILTTH 189
           I   L ++ +GRTVI++ H
Sbjct: 490 ILHNLRQWGEGRTVIISAH 508

Length = 569

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
            +NLSK F   KL ++ L+       I   +G NGAGK+T   M+ G     SGT KI
Sbjct: 325 AENLSKGF-GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI 381

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 9/67 (13%)

Query: 132 TLSGGMQRK------LSVAMAFIGGSR--TVILDEPTSGVDPYSRRSIWELLIKYK-KGR 182
           TLSGG +        L+++    G +R   + LDEP   +D      + E+L +    GR
Sbjct: 815 TLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGR 874

Query: 183 TVILTTH 189
            +I+ +H
Sbjct: 875 QIIIISH 881

Length = 908

>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 128 SLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK--GRTVI 185
           S    L+ G  +K+ +A+A     R +I DEPT+ ++P ++  I+ LL +  +    T++
Sbjct: 154 SYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTIL 213

Query: 186 LTTHYMDEADLLGDRIAIIAAGK 208
           L +H +       D+I ++  G+
Sbjct: 214 LISHDLQMISQWADKINVLYCGQ 236

Length = 330

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 22/148 (14%)

Query: 33  LGHNGAGKTTTISMLMGMLPVSSGTAKIYNH--DIRT-----DMTTIRRSLG-VCPQYNA 84
           LG +GAGK++ + +L  +    SGT  I  +  D         +  +RR++G V  QYN 
Sbjct: 34  LGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN- 92

Query: 85  LFDKLTVEEHMWFYSQLKQVP-------KDLAQLEISNMIVDLGIPHKRTSLANTLSGGM 137
           L+  LTV+++      L + P       KD A      ++  L +          LSGG 
Sbjct: 93  LWPHLTVQQN------LIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQ 146

Query: 138 QRKLSVAMAFIGGSRTVILDEPTSGVDP 165
           Q+++++A A +   + ++ DEPT+ +DP
Sbjct: 147 QQRVAIARALMMEPQVLLFDEPTAALDP 174

Length = 242

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 46/206 (22%), Positives = 92/206 (44%), Gaps = 35/206 (16%)

Query: 28  QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH--DIRTDMTTIRRSLGVCPQ---Y 82
           +I    G  GAG++  + +L G    ++G   +     DIR+    IR  + +CP+    
Sbjct: 280 EIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKA 339

Query: 83  NALFDKLTVEEHMWFYSQLKQVP----------KDLAQLEISNMIVDLGIPHKRTSLANT 132
             +    +V +++   ++   +            + A   I ++ +    P +   + N 
Sbjct: 340 EGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIK--TPSREQLIMN- 396

Query: 133 LSGGMQRK------LSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVI 185
           LSGG Q+K      LS  M      + ++LDEPT G+D  ++  I+ ++ +   +G  V+
Sbjct: 397 LSGGNQQKAILGRWLSEDM------KVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVL 450

Query: 186 LTTHYMDEADLLG--DRIAIIAAGKL 209
             +   D  ++LG  DRI ++  G++
Sbjct: 451 FVSS--DLPEVLGVADRIVVMREGRI 474

Length = 501

>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 35/168 (20%), Positives = 74/168 (44%), Gaps = 29/168 (17%)

Query: 16  AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR----TDMTT 71
           AV+G+ +  YE +    +G +G GK+T    ++G++  + G       D+      +   
Sbjct: 36  AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRA 95

Query: 72  IRRSLGVCPQ--YNALFDKLTV-----EEHMWFYSQLKQVPKDLAQLEISNMIVDLGI-- 122
           +R  + +  Q    +L  ++T+     E    ++ +L    +   +  +  M++ +G+  
Sbjct: 96  VRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKL---SRQEVKDRVKAMMLKVGLLP 152

Query: 123 ------PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD 164
                 PH+        SGG  +++ +A A I   + +I DEP S +D
Sbjct: 153 NLINRYPHE-------FSGGQCQRIGIARALILEPKLIICDEPVSALD 193

Length = 331

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 52/238 (21%), Positives = 103/238 (43%), Gaps = 31/238 (13%)

Query: 1   MAIQNLSKRF--------PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP 52
           + ++NLSK F             AV  ++    E Q  + +G NG+GK+T   ML GM+ 
Sbjct: 5   LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64

Query: 53  VSSGTAKIYNH-----DIRTDMTTIRR-----SLGVCPQYNA---LFDKLTVEEHMWFYS 99
            +SG   I +H     D       IR      +  + P+      L   L +   +    
Sbjct: 65  PTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQ 124

Query: 100 QLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP 159
           + KQ+ + L  + +        +P       + L+ G ++++++A A I   + +I DE 
Sbjct: 125 RRKQIFETLRMVGL--------LPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEA 176

Query: 160 TSGVDPYSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 215
            + +D   R  +  L+  ++ K+G + I  T ++     + D++ ++  G++   GS+
Sbjct: 177 LASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGST 234

Length = 267

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 28/135 (20%), Positives = 47/135 (34%), Gaps = 26/135 (19%)

Query: 33  LGHNGAGKTTTISMLMGMLPVS---SGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKL 89
           LG  G+G +T +  L      +    G         +         +    + +  F  L
Sbjct: 39  LGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTL 98

Query: 90  TVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIG 149
           TV E + F  + K            N  V  GI           SGG ++++S+A A + 
Sbjct: 99  TVRETLDFALRCK-----------GNEFVR-GI-----------SGGERKRVSIAEALVS 135

Query: 150 GSRTVILDEPTSGVD 164
            +  +  D  T G+D
Sbjct: 136 RASVLCWDNSTRGLD 150

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 44/189 (23%), Positives = 77/189 (40%), Gaps = 32/189 (16%)

Query: 34  GHNGAGKTTTISMLMG--------MLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNAL 85
           G +GAGKTT + M++G             SG  ++  + +         S  +  +Y   
Sbjct: 416 GQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV---------SALIPGEYEPE 466

Query: 86  FDKLTVEEHMWFYSQLKQVPKDL-AQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVA 144
           F ++T+ EH+           DL A +EI N    L          + LS G + +  +A
Sbjct: 467 FGEVTILEHLR------SKTGDLNAAVEILNR-AGLSDAVLYRRKFSELSTGQKERAKLA 519

Query: 145 MAFIGGSRTVILDEPTSGVDPYS----RRSIWELLIKYKKGRTVILTTHYMDEADLLG-D 199
                    +++DE  + +D  +     R I EL    + G T+I+ TH  +  + L  D
Sbjct: 520 KLLAERPNVLLIDEFAAHLDELTAVRVARKISEL--AREAGITLIVVTHRPEVGNALRPD 577

Query: 200 RIAIIAAGK 208
            + ++  GK
Sbjct: 578 TLILVGYGK 586

Length = 593

>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 23/115 (20%)

Query: 89  LTVEEHMWFYSQLKQVPKDLAQLEISNMIVD-------LGIPHKRTSLANTLSGG-MQR- 139
           +TVEE + F+   + +PK   +L+    +VD       LG P      A TLSGG  QR 
Sbjct: 784 MTVEEALEFF---EAIPKIARKLQT---LVDVGLGYIKLGQP------ATTLSGGEAQRV 831

Query: 140 KLSVAMAFIGGSRTV-ILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTHYMD 192
           KL+  ++     +T+ ILDEPT+G+     + + E+L +   KG TVI+  H +D
Sbjct: 832 KLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD 886

Length = 935

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 47/197 (23%)

Query: 10  FPNG--KLAVNGLNVNFYEDQITSF------------------LGHNGAGKTTTISMLMG 49
           FPN   K+   G           +F                  LG  G+G +T +  +  
Sbjct: 50  FPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIAS 109

Query: 50  -----MLPVSSGTAKIYN----HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ 100
                 + V       Y+     +I       R  +    + +  F  LTV E + F ++
Sbjct: 110 NTDGFHIGVEGVIT--YDGITPEEI---KKHYRGDVVYNAETDVHFPHLTVGETLDFAAR 164

Query: 101 LKQV---PKDLAQLEISNMIVDL-----GIPHKR-TSLANTL----SGGMQRKLSVAMAF 147
            K     P  +++ E +  I D+     G+ H R T + N      SGG ++++S+A A 
Sbjct: 165 CKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEAS 224

Query: 148 IGGSRTVILDEPTSGVD 164
           +GG++    D  T G+D
Sbjct: 225 LGGAKIQCWDNATRGLD 241

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 39.3 bits (91), Expect = 5e-04
 Identities = 38/190 (20%), Positives = 60/190 (31%), Gaps = 56/190 (29%)

Query: 28  QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD 87
           ++   +G  G+GKTT    L   L    G        I  D   I   +           
Sbjct: 3   EVILIVGPPGSGKTTLARALARELGPPGGGV------IYIDGEDILEEVL---------- 46

Query: 88  KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF 147
                                          D  +         + SG ++ +L++A+A 
Sbjct: 47  -------------------------------DQLLLIIVGGKKASGSGELRLRLALALAR 75

Query: 148 IGGSRTVILDEPTSGVDPYSRRSIWELL-------IKYKKGRTVILTTHYMDEADLLGDR 200
                 +ILDE TS +D      +  L        +K +K  TVILTT+  DE DL    
Sbjct: 76  KLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN--DEKDLGPAL 133

Query: 201 IAIIAAGKLQ 210
           +      ++ 
Sbjct: 134 LRRRFDRRIV 143

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 40/162 (24%)

Query: 34  GHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRR-----------------SL 76
           G NGAGK+T + +L G + +  G   IY  D+      + R                 + 
Sbjct: 36  GRNGAGKSTLMKILNGEVLLDDGRI-IYEQDL-----IVARLQQDPPRNVEGTVYDFVAE 89

Query: 77  GVCPQ------YNALFDKLTVEEHMWFYSQLKQVPKDLA-----QLE--ISNMIVDLGI- 122
           G+  Q      Y+ +   +  +      ++L ++ + L      QLE  I+ ++  LG+ 
Sbjct: 90  GIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD 149

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD 164
           P    S   +LSGG  RK ++  A +     ++LDEPT+ +D
Sbjct: 150 PDAALS---SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188

Length = 635

>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA

 Score = 39.5 bits (93), Expect = 8e-04
 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 10/77 (12%)

Query: 120 LGIPHKRTSLANTLSGG-MQR-KLSVAMAFIGGSRTV-ILDEPTSGVDPYSRRSIWELLI 176
           LG P      A TLSGG  QR KL+  ++     +T+ ILDEPT+G+  +  + + E+L 
Sbjct: 163 LGQP------ATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQ 216

Query: 177 KY-KKGRTVILTTHYMD 192
           +   KG TV++  H +D
Sbjct: 217 RLVDKGNTVVVIEHNLD 233

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 49/203 (24%), Positives = 79/203 (38%), Gaps = 43/203 (21%)

Query: 28  QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRR------------- 74
           Q+   +G NG GK+T + +L G L  + G       D   D   I               
Sbjct: 27  QVLGLVGPNGIGKSTALKILAGKLKPNLG-----KFDDPPDWDEILDEFRGSELQNYFTK 81

Query: 75  ------SLGVCPQYNALFDKL---TVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK 125
                  + V PQY  L  K     V E +    +  ++ + + QLE+ + ++D  I   
Sbjct: 82  LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRH-VLDRNIDQ- 139

Query: 126 RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR----RSIWELLIKYKKG 181
                  LSGG  +++++A A    +     DEP+S +D   R    R I EL    +  
Sbjct: 140 -------LSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELA---EDD 189

Query: 182 RTVILTTHYMDEADLLGDRIAII 204
             V++  H +   D L D I  +
Sbjct: 190 NYVLVVEHDLAVLDYLSDYIHCL 212

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA

 Score = 39.2 bits (92), Expect = 9e-04
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 10/82 (12%)

Query: 115 NMIVDLGIPHKRTS-LANTLSGG-MQRKLSVAMAFIGGSRTV----ILDEPTSGVDPYSR 168
             +VD+G+ +   S  A TLSGG  QR   + +A   GS       +LDEP+ G+ P   
Sbjct: 119 GFLVDVGLGYLTLSRSAPTLSGGEAQR---IRLATQIGSGLTGVLYVLDEPSIGLHPRDN 175

Query: 169 RSIWELLIKYK-KGRTVILTTH 189
             + E L + +  G TV++  H
Sbjct: 176 DRLIETLKRLRDLGNTVLVVEH 197

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226

>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 133 LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK--GRTVILTTHY 190
           L+ G  +K+ +A+A     R +I DEPT+ ++P ++  I+ LL +  +    T++L +H 
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD 218

Query: 191 MDEADLLGDRIAIIAAGK 208
           +       D+I ++  G+
Sbjct: 219 LQMLSQWADKINVLYCGQ 236

Length = 330

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 39.3 bits (93), Expect = 0.001
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 4   QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           +NLSK F   +L ++ L+ +     I   +G NGAGK+T   M+ G     SGT KI
Sbjct: 328 ENLSKSF-GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI 383

Length = 556

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 3  IQNLSK--RFPNGKL------AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS 54
          ++NLSK  R+  G        AV  L+    E Q  + +G NG+GK+T   ML GM+  +
Sbjct: 7  VRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT 66

Query: 55 SGTAKIYNH 63
          SG   I +H
Sbjct: 67 SGELLIDDH 75

Length = 267

>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 42/203 (20%), Positives = 92/203 (45%), Gaps = 27/203 (13%)

Query: 16  AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRS 75
           A++ +++  YE  +   +G NG+GK+T  +++ G L  + G           +++ I  S
Sbjct: 39  ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-----EVSVIAIS 93

Query: 76  LGVCPQYNALFDKLTVEEHMWF------YSQLKQVPKDLAQL-EISNMIVDLGIPHKRTS 128
            G+  Q       LT  E++ F      + + K++     ++ E S +   +  P K+  
Sbjct: 94  AGLSGQ-------LTGIENIEFKMLCMGFKR-KEIKAMTPKIIEFSELGEFIYQPVKK-- 143

Query: 129 LANTLSGGMQRKLSVAMAFIGGSRTVILDEPTS-GVDPYSRRSIWELLIKYKKGRTVILT 187
                S GM+ KL  ++        +++DE  S G   ++++ + ++    ++ +T+   
Sbjct: 144 ----YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFV 199

Query: 188 THYMDEADLLGDRIAIIAAGKLQ 210
           +H + +      +IA I  GKL+
Sbjct: 200 SHNLGQVRQFCTKIAWIEGGKLK 222

Length = 264

>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 40/229 (17%)

Query: 1   MA---IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
           MA   +Q + K +      + G++++  + +    +G +G GK+T + M+ G+  ++SG 
Sbjct: 1   MAGLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGE 60

Query: 58  AKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI 117
             I    +  ++    R + +  Q  AL+  ++V E+M +  +++ +PK     EI   +
Sbjct: 61  IWIGGRVV-NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKA----EIEERV 115

Query: 118 VD----LGI-------PHKRTSLANTLSGGMQRKLSVAM--AFIGGSRTVILDEPTSGVD 164
            +    L +       P +       LSGG QR+  VAM  A +      + DEP S +D
Sbjct: 116 AEAARILELEPLLDRKPRE-------LSGG-QRQ-RVAMGRAIVREPAVFLFDEPLSNLD 166

Query: 165 PYSR---RSIWELLIKYKKGR---TVILTTHYMDEADLLGDRIAIIAAG 207
              R   R    L I+    R   T +  TH   EA  L DR+ ++  G
Sbjct: 167 AKLRVQMR----LEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGG 211

Length = 356

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 38.9 bits (90), Expect = 0.002
 Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 132  TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKGRTVILTTH 189
            +LSGG ++++++A A +   + ++LDE TS +D  S + I + +  IK K  +T+I   H
Sbjct: 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAH 1417

Length = 1466

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 56/265 (21%), Positives = 106/265 (40%), Gaps = 54/265 (20%)

Query: 4    QNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG------ 56
            +N   R+  +  L +  +NV  +  +    +G  GAGK++    L  +   + G      
Sbjct: 1288 RNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDG 1347

Query: 57   --TAKIYNHDIRTDMT-----------TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ 103
               AKI  HD+R  +T           ++R +L    QY+        +E +W+  +L  
Sbjct: 1348 LNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYS--------DEEVWWALELAH 1399

Query: 104  VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGV 163
            +   ++ L          + H+       LS G ++ + +A A +  ++ ++LDE T+ V
Sbjct: 1400 LKTFVSALPD-------KLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAV 1452

Query: 164  DPYSRRSIWELLIKYKKGRTVILTTH----YMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219
            D  +   I   +    +  TV+   H     MD       R+ ++  G++   G+   L 
Sbjct: 1453 DLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYT-----RVIVLDKGEVAEFGAPSNLL 1507

Query: 220  NSFARGYYLSLDMKSAQLQAEDIGL 244
                RG + S+        A+D GL
Sbjct: 1508 Q--QRGIFYSM--------AKDAGL 1522

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 63/243 (25%), Positives = 104/243 (42%), Gaps = 24/243 (9%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMG--MLPVSSGTAKI 60
           I+NL     N    + GLN++  + +I + +G NG+GK+T   ++ G     +  G    
Sbjct: 10  IKNLHASV-NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILF 68

Query: 61  YNHDIRTDMTTIRRS-LGV--CPQY--------NALFDKLTVEEHMWFYSQLKQVPKDLA 109
               I  D+    R+ LG+    QY        NA F +L       F    +  P  L 
Sbjct: 69  KGESI-LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDP--LE 125

Query: 110 QLEISNMIVDLGIPHKRTSLANTL----SGGMQRKLSVAMAFIGGSRTVILDEPTSGVDP 165
            LEI N  + L +    + L+  +    SGG +++  +    +  S   ILDE  SG+D 
Sbjct: 126 FLEIINEKLKL-VGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDI 184

Query: 166 YSRRSIWELLIKYK-KGRTVILTTHYMDEAD-LLGDRIAIIAAGKLQCCGSSVFLKNSFA 223
            + + I E + K      ++IL THY    D +  D + ++  GK+   G +   K    
Sbjct: 185 DALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELAKELEK 244

Query: 224 RGY 226
           +GY
Sbjct: 245 KGY 247

Length = 252

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 38.1 bits (88), Expect = 0.004
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 128 SLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKGRTVI 185
           S A+ LSGG ++++S+A A I   + +ILDE TS +D  S   + + +  +K  + R  I
Sbjct: 575 SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITI 634

Query: 186 LTTH 189
           +  H
Sbjct: 635 IIAH 638

Length = 1466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	251
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	100.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	100.0
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	100.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	100.0
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	100.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	100.0
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	100.0
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK09984	262	phosphonate/organophosphate ester transporter subu	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	100.0
cd03299	235	ABC_ModC_like Archeal protein closely related to M	100.0
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	100.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	100.0
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	100.0
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	100.0
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	100.0
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	100.0
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	100.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	100.0
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	100.0
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	100.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03234	226	ABCG_White The White subfamily represents ABC tran	100.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	100.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	100.0
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	100.0
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	100.0
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	100.0
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	100.0
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	100.0
COG4181	228	Predicted ABC-type transport system involved in ly	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	100.0
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	100.0
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	100.0
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	100.0
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
PRK03695	248	vitamin B12-transporter ATPase; Provisional	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	100.0
COG4525	259	TauB ABC-type taurine transport system, ATPase com	100.0
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	100.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	100.0
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	100.0
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	100.0
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	100.0
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	100.0
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
COG4559	259	ABC-type hemin transport system, ATPase component	100.0
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	100.0
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	100.0
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	100.0
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	100.0
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	100.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	100.0
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	100.0
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	100.0
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	100.0
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	100.0
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	100.0
cd03246	173	ABCC_Protease_Secretion This family represents the	100.0
cd03215	182	ABC_Carb_Monos_II This family represents domain II	100.0
PRK13546	264	teichoic acids export protein ATP-binding subunit;	100.0
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	100.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	100.0
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	100.0
COG4988	559	CydD ABC-type transport system involved in cytochr	100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	100.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	100.0
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	100.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	100.0
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	100.0
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	100.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	100.0
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	100.0
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	100.0
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	100.0
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	100.0
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
cd03216	163	ABC_Carb_Monos_I This family represents the domain	100.0
COG4586	325	ABC-type uncharacterized transport system, ATPase	100.0
KOG0058|consensus	716		100.0
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	100.0
COG4674	249	Uncharacterized ABC-type transport system, ATPase	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	100.0
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	100.0
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	100.0
COG4619	223	ABC-type uncharacterized transport system, ATPase	100.0
PRK10535	648	macrolide transporter ATP-binding /permease protei	100.0
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	100.0
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	100.0
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	100.0
KOG0057|consensus	591		100.0
KOG0055|consensus	1228		100.0
KOG0059|consensus	885		100.0
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	100.0
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	100.0
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	100.0
COG4987	573	CydC ABC-type transport system involved in cytochr	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	100.0
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	100.0
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	100.0
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
PRK10522	547	multidrug transporter membrane component/ATP-bindi	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	100.0
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	100.0
KOG0055|consensus	1228		100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	100.0
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	100.0
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	100.0
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	100.0
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	100.0
KOG0061|consensus	613		100.0
COG4133	209	CcmA ABC-type transport system involved in cytochr	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	100.0
COG4136	213	ABC-type uncharacterized transport system, ATPase	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
KOG0056|consensus	790		100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	100.0
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	100.0
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
KOG0054|consensus	1381		100.0
PF00005	137	ABC_tran: ABC transporter This structure is on hol	100.0
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	100.0
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
KOG0054|consensus	1381		100.0
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	100.0
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	100.0
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	100.0
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	100.0
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	100.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	100.0
PRK00635	1809	excinuclease ABC subunit A; Provisional	100.0
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	100.0
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	100.0
KOG0927|consensus	614		100.0
KOG0065|consensus	1391		100.0
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	100.0
KOG0927|consensus	614		99.97
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.97
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.97
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.97
COG4178	604	ABC-type uncharacterized transport system, permeas	99.97
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.97
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.97
KOG0062|consensus	582		99.97
KOG0062|consensus	582		99.96
KOG0066|consensus	807		99.96
KOG2355|consensus	291		99.95
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.95
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.94
KOG0060|consensus	659		99.94
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.94
KOG0065|consensus	1391		99.93
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.92
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.92
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.92
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.91
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.91
KOG0066|consensus	807		99.9
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.9
KOG0064|consensus	728		99.9
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.89
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.89
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.89
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.88
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.88
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.88
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.87
KOG0063|consensus	592		99.86
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.84
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.83
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.77
PRK00064	361	recF recombination protein F; Reviewed	99.77
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.75
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.75
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.73
KOG0063|consensus	592		99.68
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.67
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.67
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	99.66
PRK00409	782	recombination and DNA strand exchange inhibitor pr	99.64
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.63
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.62
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.62
PHA02562	562	46 endonuclease subunit; Provisional	99.6
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.57
PRK10869	553	recombination and repair protein; Provisional	99.57
cd01128	249	rho_factor Transcription termination factor rho is	99.56
PRK13695	174	putative NTPase; Provisional	99.55
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	99.55
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	99.55
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	99.55
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	99.54
PRK03918	880	chromosome segregation protein; Provisional	99.51
PRK01156	895	chromosome segregation protein; Provisional	99.5
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.49
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.49
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.46
PRK13830	818	conjugal transfer protein TrbE; Provisional	99.46
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.46
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	99.45
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	99.42
COG3910	233	Predicted ATPase [General function prediction only	99.4
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.38
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	99.38
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	99.37
PRK02224	880	chromosome segregation protein; Provisional	99.29
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	99.27
PRK06067	234	flagellar accessory protein FlaH; Validated	99.27
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	99.24
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	99.24
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	99.2
smart00382	148	AAA ATPases associated with a variety of cellular	99.19
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	99.16
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	99.14
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	99.13
TIGR00611	365	recf recF protein. All proteins in this family for	99.12
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	99.09
PRK13891	852	conjugal transfer protein TrbE; Provisional	99.08
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	99.08
PRK06315	442	type III secretion system ATPase; Provisional	99.02
PRK09825	176	idnK D-gluconate kinase; Provisional	99.0
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.98
PRK05399	854	DNA mismatch repair protein MutS; Provisional	98.96
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	98.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.96
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.95
PRK14079	349	recF recombination protein F; Provisional	98.92
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.9
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.88
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.83
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.83
PRK00300	205	gmk guanylate kinase; Provisional	98.83
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	98.82
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.78
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.77
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.76
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.74
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.73
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.73
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	98.72
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.71
PRK08149	428	ATP synthase SpaL; Validated	98.71
PRK01889	356	GTPase RsgA; Reviewed	98.7
PRK09862	506	putative ATP-dependent protease; Provisional	98.68
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	98.67
PRK10416	318	signal recognition particle-docking protein FtsY;	98.67
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.67
PRK13873	811	conjugal transfer ATPase TrbE; Provisional	98.65
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.65
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	98.64
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	98.63
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.59
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	98.58

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-69  Score=451.31  Aligned_cols=219  Identities=27%  Similarity=0.456  Sum_probs=206.3

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC--ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT--DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~~~i~~   78 (251)
                      |+++||+|+|| +..+|++||++|++||+++|+||||||||||||||++|.+|++|+|+++|+++..  ....+|+++|+
T Consensus         3 i~i~~l~K~fg-~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm   81 (240)
T COG1126           3 IEIKNLSKSFG-DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM   81 (240)
T ss_pred             EEEEeeeEEeC-CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCe
Confidence            58999999997 4889999999999999999999999999999999999999999999999988743  45678899999


Q ss_pred             EccCCCCCCCCCHHHHHHHHH-HhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367          79 CPQYNALFDKLTVEEHMWFYS-QLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD  157 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD  157 (251)
                      |||+++|||++||.||+.++. ...+.+++++++++.++|+++||.+..+.+|.+|||||||||+|||||+.+|+++|+|
T Consensus        82 VFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFD  161 (240)
T COG1126          82 VFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFD  161 (240)
T ss_pred             ecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeec
Confidence            999999999999999999864 4678889999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         158 EPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       158 EPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      ||||+|||+...++++.+++++ +|.|.|++||+|.++.++||||++|++|+++++|+|+++..
T Consensus       162 EPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~  225 (240)
T COG1126         162 EPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFD  225 (240)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhc
Confidence            9999999999999999999996 59999999999999999999999999999999999886643

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.4e-65  Score=446.19  Aligned_cols=218  Identities=27%  Similarity=0.441  Sum_probs=205.8

Q ss_pred             CEEEeEEEEeCCC----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC----ChHHh
Q psy7367           1 MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT----DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~----~~~~~   72 (251)
                      |++++++|.|..+    ..+|+||||+|++||++||+|+||||||||+||+++|.+|++|+|.++|+++..    ..+..
T Consensus         2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~   81 (339)
T COG1135           2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL   81 (339)
T ss_pred             eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence            5899999999641    469999999999999999999999999999999999999999999999998853    33567


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR  152 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~  152 (251)
                      |++|||+||+++|+...||++|++|++++.+.++++.++++.++|+.+||+++.+++|.+|||||||||+|||||+.+|+
T Consensus        82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~  161 (339)
T COG1135          82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPK  161 (339)
T ss_pred             HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         153 TVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       153 llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      +||.|||||+|||...+.++++|+++. + |.||+++||.|+.+.++|||+.+|++|++++.|+..++
T Consensus       162 iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v  229 (339)
T COG1135         162 ILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV  229 (339)
T ss_pred             EEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence            999999999999999999999999995 4 99999999999999999999999999999999987644

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.8e-65  Score=434.80  Aligned_cols=218  Identities=30%  Similarity=0.468  Sum_probs=207.4

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      ++++|+||+|+ ++.+++|+||+|++||+++++|||||||||+||+|++|+.|++|+|+++|+++.. +..++|++||||
T Consensus         2 I~~~nvsk~y~-~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv   80 (309)
T COG1125           2 IEFENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV   80 (309)
T ss_pred             ceeeeeehhcC-CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence            58999999996 5889999999999999999999999999999999999999999999999999975 566889999999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc--ccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH--KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD  157 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD  157 (251)
                      -|...|||++||.||+.+.-.+.+.++++.+++++++|+.+||++  +.+++|++|||||||||.+||||+.+|+++|||
T Consensus        81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMD  160 (309)
T COG1125          81 IQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMD  160 (309)
T ss_pred             hhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeec
Confidence            999999999999999999888888888889999999999999974  889999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         158 EPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       158 EPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |||++|||.+|.++-+.+.+++ + |+|||+||||++++.+++|||.+|++|+++..++|+++.
T Consensus       161 EPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il  224 (309)
T COG1125         161 EPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEIL  224 (309)
T ss_pred             CCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHH
Confidence            9999999999999999999986 3 999999999999999999999999999999999997653

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.1e-63  Score=444.38  Aligned_cols=218  Identities=28%  Similarity=0.418  Sum_probs=205.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++||+|+|++ ..+++++||+|++||+++|+||||||||||||+|+||++|++|+|+++|++++.-.+ .+|.|+|||
T Consensus         4 i~l~~v~K~yg~-~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P-~~R~iamVF   81 (338)
T COG3839           4 LELKNVRKSFGS-FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPP-EKRGIAMVF   81 (338)
T ss_pred             EEEeeeEEEcCC-ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-hHCCEEEEe
Confidence            579999999964 239999999999999999999999999999999999999999999999999976222 357899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |+..|||+|||+||+.|+++.++.++++.+++++++++.++|+++++++|.+|||||||||+|||||+.+|+++|||||+
T Consensus        82 Q~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPl  161 (338)
T COG3839          82 QNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPL  161 (338)
T ss_pred             CCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      |+||+..+..+...|++++ + |.|+|++|||..++..++|||.+|++|++...|+|.++..
T Consensus       162 SnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~  223 (338)
T COG3839         162 SNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYE  223 (338)
T ss_pred             hHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence            9999999999999999985 3 8999999999999999999999999999999999987644

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=2.4e-62  Score=435.21  Aligned_cols=224  Identities=38%  Similarity=0.648  Sum_probs=207.3

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|++|+|++++.+|+||||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.++.......+++|||+|
T Consensus         5 i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~   84 (293)
T COG1131           5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVP   84 (293)
T ss_pred             eeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEc
Confidence            46799999996247899999999999999999999999999999999999999999999999998765667888999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++.+||+||+.|++.+++.+....+++++++++.++|.+..++++.+||+|||||++||+||+.+|+++||||||
T Consensus        85 ~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt  164 (293)
T COG1131          85 QEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPT  164 (293)
T ss_pred             cCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence            99999999999999999999988765555678999999999998778899999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-CC-CeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhcC
Q psy7367         161 SGVDPYSRRSIWELLIKYK-KG-RTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFAR  224 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~g-~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~  224 (251)
                      +||||.++..++++|++++ +| +||+++||.+++++.+||||++|++|++++.|++..+...+..
T Consensus       165 ~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~  230 (293)
T COG1131         165 SGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGG  230 (293)
T ss_pred             cCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhcc
Confidence            9999999999999999996 45 8999999999999999999999999999999998887665443

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=5.1e-63  Score=417.13  Aligned_cols=220  Identities=31%  Similarity=0.494  Sum_probs=205.0

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC----ChHHhhcce
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT----DMTTIRRSL   76 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~----~~~~~~~~i   76 (251)
                      |++++|+++|+ ++.+++|+||+|++||+++|+||||||||||||+|.|+++|++|+|+++|+++..    ...++++++
T Consensus         9 I~vr~v~~~fG-~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~   87 (263)
T COG1127           9 IEVRGVTKSFG-DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRM   87 (263)
T ss_pred             EEEeeeeeecC-CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhhe
Confidence            57999999996 4889999999999999999999999999999999999999999999999999854    123568899


Q ss_pred             EEEccCCCCCCCCCHHHHHHHHHHh-cCCChHHHHHHHHHHHHHcCCCcc-cCCCCCcCChhHHHHHHHHHHHccCCCEE
Q psy7367          77 GVCPQYNALFDKLTVEEHMWFYSQL-KQVPKDLAQLEISNMIVDLGIPHK-RTSLANTLSGGMQRKLSVAMAFIGGSRTV  154 (251)
Q Consensus        77 ~~v~q~~~l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~kqrv~ia~al~~~p~ll  154 (251)
                      |++||...||..|||+||+.|+.+- ...+++..++.+..-|+.+||... .+++|++|||||++|++||||++.+|+++
T Consensus        88 GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell  167 (263)
T COG1127          88 GVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELL  167 (263)
T ss_pred             eEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEE
Confidence            9999999999999999999998764 467788888889999999999977 89999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHhhhC--CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         155 ILDEPTSGVDPYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       155 llDEPt~gLD~~~~~~l~~~l~~l~~--g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      ++||||+||||.+...+-++|+++++  |.|+++||||++.+..+|||++++.+|+|++.|+++++...
T Consensus       168 ~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~s  236 (263)
T COG1127         168 FLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS  236 (263)
T ss_pred             EecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhC
Confidence            99999999999999999999999964  99999999999999999999999999999999999887653

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.8e-63  Score=420.24  Aligned_cols=205  Identities=25%  Similarity=0.427  Sum_probs=191.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++++++.|++ ..+|+|+||+|.+||+++|+||||||||||||+|+|+.+|++|+|.++|+++..+    ...++|||
T Consensus         4 l~i~~v~~~f~~-~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p----~~~~~~vF   78 (248)
T COG1116           4 LEIEGVSKSFGG-VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP----GPDIGYVF   78 (248)
T ss_pred             EEEEeeEEEeCc-eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC----CCCEEEEe
Confidence            478999999975 8899999999999999999999999999999999999999999999999988432    45799999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.|+|++||+||+.|+....+.++.+.++++.++|+.+||.++.+++|++|||||||||+|||||+.+|++|||||||
T Consensus        79 Q~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPF  158 (248)
T COG1116          79 QEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPF  158 (248)
T ss_pred             ccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            99999999999999999998877777777789999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeC--CEEE
Q psy7367         161 SGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAA--GKLQ  210 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~--G~i~  210 (251)
                      ++||..++..+.+.+.++.  .++||++||||++++-.++|||++|.+  |+|.
T Consensus       159 gALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~  212 (248)
T COG1116         159 GALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG  212 (248)
T ss_pred             chhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence            9999999999999999973  389999999999999999999999999  4453

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.4e-63  Score=410.35  Aligned_cols=221  Identities=29%  Similarity=0.483  Sum_probs=210.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      +++.+++|+|+....+++||||+++.||++||+|||||||||+||+|++++.|++|.|+++|.+....+...|++||.+|
T Consensus         2 l~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~   81 (245)
T COG4555           2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLF   81 (245)
T ss_pred             eeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceec
Confidence            57899999997634599999999999999999999999999999999999999999999999999877778899999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      .+..+|..||++|||.|+++++++.+.+.+++++++.+.|+|.+.+++++++||.||||||+|||||+++|++++|||||
T Consensus        82 ~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~  161 (245)
T COG4555          82 GERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPT  161 (245)
T ss_pred             CCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhhC-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         161 SGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      ||||..+++.+.+.+.++++ |++||++||+|++++.+|||++++++|+++..|+++.+...
T Consensus       162 sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r  223 (245)
T COG4555         162 SGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR  223 (245)
T ss_pred             CCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence            99999999999999999975 99999999999999999999999999999999999876554

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=4.9e-63  Score=427.23  Aligned_cols=217  Identities=27%  Similarity=0.380  Sum_probs=199.0

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      ++++||+++|+ ++++|+|+||++++||+++|+||||||||||||+|+|+++|.+|+|+++|+++.. +.+++.+.++|+
T Consensus         3 L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v   81 (258)
T COG1120           3 LEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV   81 (258)
T ss_pred             eEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence            57999999996 5899999999999999999999999999999999999999999999999999965 556788999999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHh----cCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQL----KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI  155 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll  155 (251)
                      ||.+...+++||+|.+.++..-    .....++..+.+.++|+.+++.+++++++.+|||||||||.|||||+++|++||
T Consensus        82 pQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLL  161 (258)
T COG1120          82 PQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILL  161 (258)
T ss_pred             ccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEE
Confidence            9999888889999999986431    222244455679999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         156 LDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       156 lDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      |||||++||..++.+++++++++. + |+|||+++||++.+.++||++++|++|++++.|+|+++
T Consensus       162 LDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~ev  226 (258)
T COG1120         162 LDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEV  226 (258)
T ss_pred             eCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchh
Confidence            999999999999999999999995 4 99999999999999999999999999999999998643

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=2.9e-63  Score=445.63  Aligned_cols=216  Identities=28%  Similarity=0.451  Sum_probs=202.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++||+|+|+ +..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++|+++..- +..+|.||+||
T Consensus         6 l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~l-pp~kR~ig~VF   83 (352)
T COG3842           6 LEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDV-PPEKRPIGMVF   83 (352)
T ss_pred             EEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC-Chhhcccceee
Confidence            57999999997 58899999999999999999999999999999999999999999999999999752 33468999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQ-VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP  159 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEP  159 (251)
                      |+..|||+|||+||+.|+++..+ .++++.++++.++++.++|+++.+++|.+|||||||||+|||||+.+|++||||||
T Consensus        84 Q~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEP  163 (352)
T COG3842          84 QSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEP  163 (352)
T ss_pred             cCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCc
Confidence            99999999999999999998554 44566788999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         160 TSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       160 t~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      .|+||...|.++...++++. + |.|.|++|||.+++..++|||++|++|+|...|+|+++
T Consensus       164 lSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~ei  224 (352)
T COG3842         164 LSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI  224 (352)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHH
Confidence            99999999999999999984 3 99999999999999999999999999999999999866

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=2.8e-62  Score=399.35  Aligned_cols=213  Identities=25%  Similarity=0.427  Sum_probs=203.3

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC----ChHHhhcce
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT----DMTTIRRSL   76 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~----~~~~~~~~i   76 (251)
                      |+++||+|+|++++++|+||||+|++||++.|+||||||||||||+|++.++|++|+|+++|+++..    ..+-+|++|
T Consensus         2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~I   81 (223)
T COG2884           2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI   81 (223)
T ss_pred             eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhee
Confidence            5789999999877789999999999999999999999999999999999999999999999999853    334679999


Q ss_pred             EEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367          77 GVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL  156 (251)
Q Consensus        77 ~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll  156 (251)
                      |+|||+..|.+++||+||++|+++..+.++.+.++++.++|+.+||.+..+..|.+|||||||||+||||++.+|++||.
T Consensus        82 GvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlA  161 (223)
T COG2884          82 GVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLA  161 (223)
T ss_pred             eeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367         157 DEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  213 (251)
Q Consensus       157 DEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g  213 (251)
                      ||||.+|||.....+++++.++. .|+||+|+|||.+.+.++--|++.+++|+++.+.
T Consensus       162 DEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~  219 (223)
T COG2884         162 DEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE  219 (223)
T ss_pred             cCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence            99999999999999999999996 4999999999999999999999999999998764

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=6.6e-61  Score=428.70  Aligned_cols=220  Identities=32%  Similarity=0.580  Sum_probs=204.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++||+|+|+ ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.......+++|||+|
T Consensus         8 i~i~~l~k~~~-~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~   86 (306)
T PRK13537          8 IDFRNVEKRYG-DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVP   86 (306)
T ss_pred             EEEEeEEEEEC-CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEe
Confidence            57899999996 47899999999999999999999999999999999999999999999999998654455678999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++.+||+||+.++...++.+..+..+++.++++.+++.+..++++.+||+|||||++||+||+.+|++|||||||
T Consensus        87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt  166 (306)
T PRK13537         87 QFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPT  166 (306)
T ss_pred             ccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            99999999999999998877776665666677889999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      +|||+.+++.++++|++++ +|+|||++||++++++++|||+++|++|++++.|+++++...
T Consensus       167 ~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~  228 (306)
T PRK13537        167 TGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES  228 (306)
T ss_pred             cCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence            9999999999999999986 599999999999999999999999999999999999877544

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=5.1e-61  Score=407.37  Aligned_cols=209  Identities=25%  Similarity=0.431  Sum_probs=189.0

Q ss_pred             CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC----hHHh-
Q psy7367           1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD----MTTI-   72 (251)
Q Consensus         1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~----~~~~-   72 (251)
                      ++++||+|.|+.+   ..+|+++||+|++||+++|+|||||||||||++|.|+.+|++|+|+++|+++...    ...+ 
T Consensus         2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R   81 (226)
T COG1136           2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR   81 (226)
T ss_pred             cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence            5789999999643   3699999999999999999999999999999999999999999999999998642    1233 


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccC-CCCCcCChhHHHHHHHHHHHccCC
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRT-SLANTLSGGMQRKLSVAMAFIGGS  151 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~kqrv~ia~al~~~p  151 (251)
                      +++||||||+.+|.|.+||.||+.+++.+.+.+.....++++++++.+||.+..+ ++|.+|||||||||||||||+.+|
T Consensus        82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P  161 (226)
T COG1136          82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNP  161 (226)
T ss_pred             HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCC
Confidence            4689999999999999999999999988877665455678899999999997666 889999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEE
Q psy7367         152 RTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQ  210 (251)
Q Consensus       152 ~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~  210 (251)
                      +++|+||||.+||.++.+.++++++++. + |+||||||||...+. +|||++.|++|++.
T Consensus       162 ~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~~  221 (226)
T COG1136         162 KIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKIE  221 (226)
T ss_pred             CeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCeee
Confidence            9999999999999999999999999984 4 999999999998886 79999999999953

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.6e-62  Score=409.79  Aligned_cols=227  Identities=27%  Similarity=0.448  Sum_probs=205.7

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC----ChHHhhcce
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT----DMTTIRRSL   76 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~----~~~~~~~~i   76 (251)
                      |+++||++.|++++++|++|||+|++||+++|+||||||||||||+|+|+..|++|+|.++|.++..    ..+.+|++|
T Consensus         4 i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~i   83 (258)
T COG3638           4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDI   83 (258)
T ss_pred             EEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhc
Confidence            5899999999667899999999999999999999999999999999999999999999999988753    245678999


Q ss_pred             EEEccCCCCCCCCCHHHHHHHHHH--------hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          77 GVCPQYNALFDKLTVEEHMWFYSQ--------LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        77 ~~v~q~~~l~~~ltv~e~l~~~~~--------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      ||+||.++|.+.+||.+|+..+..        +.+...++.+..+-++|+++|+.+.+.++..+|||||||||+|||||+
T Consensus        84 GmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~  163 (258)
T COG3638          84 GMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALV  163 (258)
T ss_pred             eeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHh
Confidence            999999999999999999987532        234555666778889999999999999999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhcCcc
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGY  226 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~  226 (251)
                      ++|+++|.|||+++|||.+.+.+++.|+++.  +|.|||++.|+++.+.+||||++-|++|+++++|++.++....-...
T Consensus       164 Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~~~~~~i  243 (258)
T COG3638         164 QQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTDEALDEI  243 (258)
T ss_pred             cCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhHHHHHHH
Confidence            9999999999999999999999999999984  49999999999999999999999999999999999987765544444


Q ss_pred             e
Q psy7367         227 Y  227 (251)
Q Consensus       227 ~  227 (251)
                      |
T Consensus       244 Y  244 (258)
T COG3638         244 Y  244 (258)
T ss_pred             h
Confidence            4

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.8e-61  Score=411.52  Aligned_cols=215  Identities=25%  Similarity=0.427  Sum_probs=189.4

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|++++|++. +||+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|++.....+  +.+|||||
T Consensus         5 i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~--~~~IgYVP   81 (254)
T COG1121           5 IEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK--RLRIGYVP   81 (254)
T ss_pred             EEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc--CCeEEEcC
Confidence            5799999999643 79999999999999999999999999999999999999999999999988754221  46899999


Q ss_pred             cCCCC--CCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEE
Q psy7367          81 QYNAL--FDKLTVEEHMWFYSQLK----QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTV  154 (251)
Q Consensus        81 q~~~l--~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ll  154 (251)
                      |...+  -.++||+|.+.++...+    +...+..+++++++|+++|+.++.++++++|||||+|||.|||||+++|++|
T Consensus        82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~ll  161 (254)
T COG1121          82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLL  161 (254)
T ss_pred             cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEE
Confidence            96532  23479999999864321    2223344678999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         155 ILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       155 llDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +|||||+|+|+.++..++++|.+++ +|+||++||||++.+.++||+++.| |+++.+.|++++..
T Consensus       162 lLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~  226 (254)
T COG1121         162 LLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVL  226 (254)
T ss_pred             EecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhcc
Confidence            9999999999999999999999996 4999999999999999999999999 57888999987553

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=7.9e-60  Score=426.91  Aligned_cols=220  Identities=32%  Similarity=0.542  Sum_probs=202.8

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++||+|+|+ ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.......++.|||+|
T Consensus        42 i~i~nl~k~y~-~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~  120 (340)
T PRK13536         42 IDLAGVSKSYG-DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVP  120 (340)
T ss_pred             EEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEe
Confidence            57899999996 47899999999999999999999999999999999999999999999999998654455678999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++.+||+||+.++...++....+..+++.++++.++|.+..++++.+||+|||||++||+||+++|++|||||||
T Consensus       121 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt  200 (340)
T PRK13536        121 QFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPT  200 (340)
T ss_pred             CCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence            99999999999999998776666555555667889999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      +||||.++..++++|++++ +|.|||++||++++++++||||++|++|++++.|+++++...
T Consensus       201 ~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~  262 (340)
T PRK13536        201 TGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE  262 (340)
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence            9999999999999999985 599999999999999999999999999999999999887554

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=9.6e-60  Score=426.33  Aligned_cols=219  Identities=29%  Similarity=0.425  Sum_probs=200.4

Q ss_pred             CEEEeEEEEeCC---CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-Ch---HHhh
Q psy7367           1 MAIQNLSKRFPN---GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DM---TTIR   73 (251)
Q Consensus         1 l~i~~l~~~y~~---~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~---~~~~   73 (251)
                      |+++|++|+|++   ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ..   ...+
T Consensus         2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r   81 (343)
T TIGR02314         2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR   81 (343)
T ss_pred             EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence            589999999952   2479999999999999999999999999999999999999999999999999854 22   2357


Q ss_pred             cceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCE
Q psy7367          74 RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRT  153 (251)
Q Consensus        74 ~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~l  153 (251)
                      ++|||+||++.+++.+||+||+.++....+.+..+..+++.++++.+||.+..++++.+|||||||||+|||||+.+|++
T Consensus        82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~i  161 (343)
T TIGR02314        82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKV  161 (343)
T ss_pred             cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence            79999999999999999999999987766666666677899999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         154 VILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       154 lllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |||||||++||+.++..++++|++++ + |.|||++||+++.+.++||++++|++|++++.|+++++.
T Consensus       162 LLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~  229 (343)
T TIGR02314       162 LLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF  229 (343)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            99999999999999999999999985 4 899999999999999999999999999999999987653

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.3e-61  Score=415.65  Aligned_cols=218  Identities=23%  Similarity=0.424  Sum_probs=200.2

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcce---eCCCChHHhhcceE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH---DIRTDMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~---~~~~~~~~~~~~i~   77 (251)
                      ++++|+++.|+ ...+++|||++|+.||+++|+||||||||||||+|+||+.|++|.|.++|+   |.+. .....++||
T Consensus         3 i~i~~~~~~~~-~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~-~~~~~R~VG   80 (345)
T COG1118           3 IRINNVKKRFG-AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN-LAVRDRKVG   80 (345)
T ss_pred             eeehhhhhhcc-cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc-cchhhccee
Confidence            46889999996 488999999999999999999999999999999999999999999999999   5443 222347899


Q ss_pred             EEccCCCCCCCCCHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367          78 VCPQYNALFDKLTVEEHMWFYSQLKQ--VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI  155 (251)
Q Consensus        78 ~v~q~~~l~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll  155 (251)
                      ||||+..+|++|||.+||+|+.+.++  .+....+.++.++|+.+.|+...+++|.+|||||||||++||||+.+|++||
T Consensus        81 fvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLL  160 (345)
T COG1118          81 FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLL  160 (345)
T ss_pred             EEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEe
Confidence            99999999999999999999987652  3356677899999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         156 LDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       156 lDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      ||||+++||...+..+...|+++. + |.|+|+||||.+++.++||||++|++|+|...|++.++..
T Consensus       161 LDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~  227 (345)
T COG1118         161 LDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD  227 (345)
T ss_pred             ecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence            999999999999999999999985 4 9999999999999999999999999999999999987743

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.2e-60  Score=405.71  Aligned_cols=219  Identities=28%  Similarity=0.479  Sum_probs=204.0

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCC--CChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR--TDMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~--~~~~~~~~~i~~   78 (251)
                      ++++|++++|+++..+|+++||+|++||+++|+||||||||||+++++|+++|++|+|.++|.++.  .....+++++||
T Consensus         4 i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~   83 (235)
T COG1122           4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGL   83 (235)
T ss_pred             EEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEE
Confidence            468999999975568999999999999999999999999999999999999999999999999986  345678899999


Q ss_pred             EccCC--CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367          79 CPQYN--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL  156 (251)
Q Consensus        79 v~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll  156 (251)
                      |||+|  ++|. -||.|.++|+....+.+.++.++++.++++.+++.++++++|.+|||||||||+||.+|+.+|++|||
T Consensus        84 VfQnpd~q~~~-~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliL  162 (235)
T COG1122          84 VFQNPDDQLFG-PTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLL  162 (235)
T ss_pred             EEECccccccc-CcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEE
Confidence            99998  4554 59999999999988999888999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         157 DEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       157 DEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      |||||+||+.+++.+++++++++ + |+|||++|||++.+..+|||+++|++|+++.+|+|.++.+
T Consensus       163 DEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~  228 (235)
T COG1122         163 DEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN  228 (235)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence            99999999999999999999996 4 6999999999999999999999999999999999876543

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.9e-59  Score=426.88  Aligned_cols=217  Identities=21%  Similarity=0.348  Sum_probs=199.8

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++++|++++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..... .++.|||+|
T Consensus         4 l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~-~~r~ig~v~   82 (356)
T PRK11650          4 LKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEP-ADRDIAMVF   82 (356)
T ss_pred             EEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH-HHCCEEEEe
Confidence            4789999999324789999999999999999999999999999999999999999999999999864222 357899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+|+++||+||+.|+.+.++.+..+..+++.++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||
T Consensus        83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~  162 (356)
T PRK11650         83 QNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPL  162 (356)
T ss_pred             CCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            99999999999999999877666666666678999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      ++||+..++.+.+.|+++. + |.|+|++|||++++..+||++++|++|+++..|+++++
T Consensus       163 s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~  222 (356)
T PRK11650        163 SNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEV  222 (356)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence            9999999999999999984 4 89999999999999999999999999999999998766

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=5e-60  Score=400.06  Aligned_cols=219  Identities=26%  Similarity=0.390  Sum_probs=198.1

Q ss_pred             CEEEeEEEEeCCCc---ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC--ChHHhhcc
Q psy7367           1 MAIQNLSKRFPNGK---LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT--DMTTIRRS   75 (251)
Q Consensus         1 l~i~~l~~~y~~~~---~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~~~   75 (251)
                      ++++|+++.|++++   ++|++|||+|.+||++||+|+||||||||.++|+|+.+|++|+|.++|+++..  +.+..++.
T Consensus         4 l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~   83 (252)
T COG1124           4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRP   83 (252)
T ss_pred             EEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccc
Confidence            57999999997533   49999999999999999999999999999999999999999999999988743  23356789


Q ss_pred             eEEEccCC--CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367          76 LGVCPQYN--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSR  152 (251)
Q Consensus        76 i~~v~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~p~  152 (251)
                      |-+|||+|  .+-|.+||.+.|.-+....+.+..+  +++.++++.+||. .+++++|.+|||||+||+||||||+.+|+
T Consensus        84 VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~--~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pk  161 (252)
T COG1124          84 VQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQ--QRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPK  161 (252)
T ss_pred             eeEEecCCccccCcchhHHHHHhhhhccCCccHHH--HHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCC
Confidence            99999998  6788899999998888776665543  4499999999997 67899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhhhC--CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         153 TVILDEPTSGVDPYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       153 llllDEPt~gLD~~~~~~l~~~l~~l~~--g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      +||||||||+||+..+.+++++|.++++  +.|+|++|||+..++.+||||++|++|++++.++..++...
T Consensus       162 lLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~  232 (252)
T COG1124         162 LLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH  232 (252)
T ss_pred             EEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence            9999999999999999999999999963  88999999999999999999999999999999998776554

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=4.8e-59  Score=415.86  Aligned_cols=220  Identities=29%  Similarity=0.497  Sum_probs=203.8

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|++|+|+ ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++......+++++||+|
T Consensus         3 l~~~~l~~~~~-~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~   81 (301)
T TIGR03522         3 IRVSSLTKLYG-TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP   81 (301)
T ss_pred             EEEEEEEEEEC-CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence            57899999996 47899999999999999999999999999999999999999999999999998654455678899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++.+|+.||+.+....++.+..+..++++++++.++|.+..++++..||+|||||++||+||+.+|++|||||||
T Consensus        82 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt  161 (301)
T TIGR03522        82 EHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPT  161 (301)
T ss_pred             CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            99999999999999998877766555555667899999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         161 SGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      +|||+.+++.++++++++++++|||++||++++++++|||+++|++|++++.|+++.+...
T Consensus       162 ~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  222 (301)
T TIGR03522       162 TGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA  222 (301)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence            9999999999999999997789999999999999999999999999999999999887554

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.6e-59  Score=424.53  Aligned_cols=217  Identities=25%  Similarity=0.413  Sum_probs=201.0

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++++|++ +.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++..... .++.|||+|
T Consensus         5 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~-~~r~ig~v~   82 (353)
T TIGR03265         5 LSIDNIRKRFGA-FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP-QKRDYGIVF   82 (353)
T ss_pred             EEEEEEEEEeCC-eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH-HHCCEEEEe
Confidence            578999999964 779999999999999999999999999999999999999999999999999864222 357899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+||++||+||+.|+...++.+..+..++++++++.++|.++.++++.+|||||||||+|||||+.+|+++||||||
T Consensus        83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~  162 (353)
T TIGR03265        83 QSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPL  162 (353)
T ss_pred             CCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            99999999999999999877666666667778999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      ++||+..++.+.+.|+++. + |.|+|++|||++++..+|||+++|++|+++..|+++++.
T Consensus       163 s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~  223 (353)
T TIGR03265       163 SALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIY  223 (353)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            9999999999999999984 4 899999999999999999999999999999999987654

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=8.2e-59  Score=414.68  Aligned_cols=220  Identities=31%  Similarity=0.547  Sum_probs=200.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.......++.+||+|
T Consensus         5 i~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   83 (303)
T TIGR01288         5 IDLVGVSKSYGD-KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVP   83 (303)
T ss_pred             EEEEeEEEEeCC-eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEe
Confidence            578999999964 7799999999999999999999999999999999999999999999999988544445678899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++.+||+||+.++...++....+..++++++++.+++.+..++++.+||||||||++||+||+.+|++|||||||
T Consensus        84 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt  163 (303)
T TIGR01288        84 QFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPT  163 (303)
T ss_pred             ccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            99999999999999987665555444455567888999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      +|||+.+++.++++|++++ +|.|||++|||++++..+||++++|++|+++..|+++.+...
T Consensus       164 ~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  225 (303)
T TIGR01288       164 TGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE  225 (303)
T ss_pred             cCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence            9999999999999999985 589999999999999999999999999999999998877544

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=7.1e-59  Score=400.41  Aligned_cols=218  Identities=29%  Similarity=0.484  Sum_probs=196.3

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-h---HHhhcce
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-M---TTIRRSL   76 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~---~~~~~~i   76 (251)
                      |+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .   ..+++.|
T Consensus         1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i   79 (235)
T cd03261           1 IELRGLTKSFG-GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM   79 (235)
T ss_pred             CeEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence            68999999996 46799999999999999999999999999999999999999999999999987532 1   3456789


Q ss_pred             EEEccCCCCCCCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367          77 GVCPQYNALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI  155 (251)
Q Consensus        77 ~~v~q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll  155 (251)
                      +|+||++.+++.+||.||+.++.... +....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||
T Consensus        80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll  159 (235)
T cd03261          80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLL  159 (235)
T ss_pred             EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            99999999999999999998865432 23444555678899999999988899999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         156 LDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       156 lDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |||||+|||+.+++.++++|+++. + |+|||++|||++++..+||++++|++|++++.|+++.+.
T Consensus       160 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  225 (235)
T cd03261         160 YDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR  225 (235)
T ss_pred             ecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence            999999999999999999999984 3 899999999999999999999999999999999887653

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.2e-59  Score=423.68  Aligned_cols=217  Identities=24%  Similarity=0.403  Sum_probs=201.4

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... ..+++|||+|
T Consensus         7 l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~~~r~ig~vf   84 (351)
T PRK11432          7 VVLKNITKRFG-SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRS-IQQRDICMVF   84 (351)
T ss_pred             EEEEeEEEEEC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHHCCEEEEe
Confidence            57899999996 477999999999999999999999999999999999999999999999999986432 2357899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+|+++||+||+.|+.+.++.+..+..++++++++.+++.++.++++.+|||||||||+|||||+.+|++|||||||
T Consensus        85 Q~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~  164 (351)
T PRK11432         85 QSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPL  164 (351)
T ss_pred             CCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence            99999999999999999887766666667788999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      ++||+..+..+.+.|+++. + |.|+|++|||++++..+|||+++|++|+++..|+++++.
T Consensus       165 s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~  225 (351)
T PRK11432        165 SNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELY  225 (351)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            9999999999999999984 3 899999999999999999999999999999999997653

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=6.3e-59  Score=397.01  Aligned_cols=216  Identities=37%  Similarity=0.590  Sum_probs=196.7

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++......++++++|+|
T Consensus         1 i~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   79 (220)
T cd03265           1 IEVENLVKKYGD-FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF   79 (220)
T ss_pred             CEEEEEEEEECC-EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence            689999999964 7899999999999999999999999999999999999999999999999987543345567899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++.+||+||+.+....++....+..+++.++++.+++.+..++++.+||||||||++||+||+.+|+++||||||
T Consensus        80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt  159 (220)
T cd03265          80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT  159 (220)
T ss_pred             CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            99999999999999998766555544455667899999999998889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHH
Q psy7367         161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  217 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~  217 (251)
                      ++||+.+++.++++|+++. + |.|||++|||++++..+|||+++|++|+++..+++++
T Consensus       160 ~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  218 (220)
T cd03265         160 IGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE  218 (220)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence            9999999999999999984 4 8999999999999999999999999999998887654

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.6e-60  Score=391.48  Aligned_cols=217  Identities=24%  Similarity=0.377  Sum_probs=200.7

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----eeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS-----SGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~-----~G~i~~~g~~~~~---~~~~~   72 (251)
                      ++++||++.|+ .+.+|++||++|++++++|+|||||||||||||+++.+....     +|+|.++|+++..   +..++
T Consensus         8 ~~~~~l~~yYg-~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~l   86 (253)
T COG1117           8 IEVRDLNLYYG-DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVEL   86 (253)
T ss_pred             eEecceeEEEC-chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHH
Confidence            46889999997 588999999999999999999999999999999999987665     4999999999954   35678


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      |++||+|||.|+-|| +|++||+.|+.++++...++..+.++..|+...|.    +.+++.+..||||||||++|||||+
T Consensus        87 Rr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalA  165 (253)
T COG1117          87 RRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALA  165 (253)
T ss_pred             HHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHh
Confidence            999999999999998 89999999999998877777778899999998774    4677889999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      .+|++||||||||+|||.+..++-+++.++++..|||||||+|..+.+++|+..++..|++++.|+.+.+.
T Consensus       166 v~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF  236 (253)
T COG1117         166 VKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF  236 (253)
T ss_pred             cCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999987653

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=9.5e-59  Score=422.76  Aligned_cols=217  Identities=25%  Similarity=0.417  Sum_probs=200.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCe--eEEEEcceeCCCChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSS--GTAKIYNHDIRTDMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~--G~i~~~g~~~~~~~~~~~~~i~~   78 (251)
                      |+++|++++|++ +.+|+++||+|++||+++|+|||||||||||++|+|+++|++  |+|+++|+++.... ..++.|+|
T Consensus         6 l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~-~~~r~ig~   83 (362)
T TIGR03258         6 IRIDHLRVAYGA-NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP-PHKRGLAL   83 (362)
T ss_pred             EEEEEEEEEECC-eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCC-HHHCCEEE
Confidence            578999999964 679999999999999999999999999999999999999999  99999999985422 23578999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE  158 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE  158 (251)
                      +||++.+|+++||+||+.|+...++.+..+..+++.++++.++|.++.++++.+|||||||||+|||||+.+|++|||||
T Consensus        84 vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDE  163 (362)
T TIGR03258        84 LFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDE  163 (362)
T ss_pred             EECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            99999999999999999998876666666667789999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhhh-C--CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         159 PTSGVDPYSRRSIWELLIKYK-K--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       159 Pt~gLD~~~~~~l~~~l~~l~-~--g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      ||++||+..+..+++.|+++. +  |.|+|++|||++++..+|||+++|++|+++..|+++++.
T Consensus       164 P~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~  227 (362)
T TIGR03258       164 PLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY  227 (362)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            999999999999999999984 3  799999999999999999999999999999999987663

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=1.5e-58  Score=394.30  Aligned_cols=217  Identities=54%  Similarity=0.877  Sum_probs=197.3

Q ss_pred             CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v   79 (251)
                      |+++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++......++++++|+
T Consensus         1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v   80 (220)
T cd03263           1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC   80 (220)
T ss_pred             CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence            6899999999632 679999999999999999999999999999999999999999999999998854344566789999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP  159 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEP  159 (251)
                      ||++.+++.+|++||+.+....++.......+++.++++.+++.+..++++.+||+|||||++|||||+.+|++||||||
T Consensus        81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP  160 (220)
T cd03263          81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP  160 (220)
T ss_pred             cCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence            99999998999999999876655544444556788999999999888999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHH
Q psy7367         160 TSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  217 (251)
Q Consensus       160 t~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~  217 (251)
                      |++||+.+++.+.++|++++++.|||++||+++++.++||++++|++|+++..|+++.
T Consensus       161 ~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~  218 (220)
T cd03263         161 TSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE  218 (220)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence            9999999999999999998767999999999999999999999999999999988764

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=1.3e-58  Score=413.19  Aligned_cols=215  Identities=40%  Similarity=0.632  Sum_probs=196.7

Q ss_pred             EEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCC
Q psy7367           8 KRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD   87 (251)
Q Consensus         8 ~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~   87 (251)
                      |+|+ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++......+++.+||+||++.+++
T Consensus         1 k~y~-~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~   79 (302)
T TIGR01188         1 KVYG-DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDE   79 (302)
T ss_pred             CeeC-CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCC
Confidence            4685 478999999999999999999999999999999999999999999999999986544456778999999999999


Q ss_pred             CCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q psy7367          88 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS  167 (251)
Q Consensus        88 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~  167 (251)
                      .+||+||+.++...++....+..+++.++++.+++.+..++++.+|||||||||+||+||+.+|++|||||||+|||+.+
T Consensus        80 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~  159 (302)
T TIGR01188        80 DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRT  159 (302)
T ss_pred             CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence            99999999988776665555556678999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhc
Q psy7367         168 RRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFA  223 (251)
Q Consensus       168 ~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~  223 (251)
                      ++.++++|++++ +|.|||++||+++++.++||++++|++|+++..|+++++...+.
T Consensus       160 ~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~  216 (302)
T TIGR01188       160 RRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLG  216 (302)
T ss_pred             HHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHhcC
Confidence            999999999985 58999999999999999999999999999999999988765543

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=1.7e-58  Score=392.35  Aligned_cols=211  Identities=30%  Similarity=0.448  Sum_probs=190.5

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..++.++|+|
T Consensus         1 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-~~~~~i~~v~   78 (213)
T cd03259           1 LELKGLSKTYGS-VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP-PERRNIGMVF   78 (213)
T ss_pred             CeeeeeEEEeCC-eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc-hhhccEEEEc
Confidence            579999999964 78999999999999999999999999999999999999999999999999885422 2356899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++.+|++||+.+.....+.......+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||
T Consensus        79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt  158 (213)
T cd03259          79 QDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPL  158 (213)
T ss_pred             CchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            99999999999999988655444444445567889999999998899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367         161 SGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  213 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g  213 (251)
                      +|||+.++..++++|+++.  .|.|||++|||++++..+||++++|++|++++.|
T Consensus       159 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         159 SALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG  213 (213)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            9999999999999999984  3899999999999999999999999999998654

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=1.4e-58  Score=393.63  Aligned_cols=209  Identities=27%  Similarity=0.497  Sum_probs=188.3

Q ss_pred             CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-C---hHHhhcc
Q psy7367           1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-D---MTTIRRS   75 (251)
Q Consensus         1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~---~~~~~~~   75 (251)
                      ++++|++++|+++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .   ...+++.
T Consensus         2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   81 (216)
T TIGR00960         2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH   81 (216)
T ss_pred             eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence            5799999999543 469999999999999999999999999999999999999999999999998743 1   1235678


Q ss_pred             eEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367          76 LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI  155 (251)
Q Consensus        76 i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll  155 (251)
                      ++|+||++.+++.+||.||+.+.....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus        82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll  161 (216)
T TIGR00960        82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLL  161 (216)
T ss_pred             ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            99999999999999999999987665444444455678999999999998999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEE
Q psy7367         156 LDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKL  209 (251)
Q Consensus       156 lDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i  209 (251)
                      |||||+|||+.+++.+.++|++++ +|.|||++|||++++..+||++++|++|++
T Consensus       162 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       162 ADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL  216 (216)
T ss_pred             EeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            999999999999999999999985 589999999999999999999999999974

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=4.2e-58  Score=420.08  Aligned_cols=217  Identities=24%  Similarity=0.380  Sum_probs=199.8

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++++|++ +.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++.... ..++.++|+|
T Consensus        15 L~l~~l~~~~~~-~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~~~r~ig~vf   92 (375)
T PRK09452         15 VELRGISKSFDG-KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP-AENRHVNTVF   92 (375)
T ss_pred             EEEEEEEEEECC-eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HHHCCEEEEe
Confidence            578999999964 77999999999999999999999999999999999999999999999999985422 2357899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+|+++||+||+.|+...++.+..+..+++.++++.++|.++.+++|.+|||||||||+|||||+.+|++|||||||
T Consensus        93 Q~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~  172 (375)
T PRK09452         93 QSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESL  172 (375)
T ss_pred             cCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            99999999999999999877666566666678899999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      ++||+..+..+.+.|+++. + |.|+|++|||++++..+|||+++|++|+++..|+++++.
T Consensus       173 s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~  233 (375)
T PRK09452        173 SALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIY  233 (375)
T ss_pred             CcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            9999999999999999984 3 899999999999999999999999999999999987653

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=3.9e-58  Score=391.26  Aligned_cols=212  Identities=30%  Similarity=0.542  Sum_probs=193.5

Q ss_pred             CEEEeEEEEeCCCc----ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcce
Q psy7367           1 MAIQNLSKRFPNGK----LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSL   76 (251)
Q Consensus         1 l~i~~l~~~y~~~~----~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i   76 (251)
                      ++++|++++|++ +    ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++......+++.+
T Consensus         2 l~~~~v~~~~~~-~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i   80 (218)
T cd03266           2 ITADALTKRFRD-VKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL   80 (218)
T ss_pred             eEEEEEEEecCC-CCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence            578999999964 4    79999999999999999999999999999999999999999999999998864444567889


Q ss_pred             EEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367          77 GVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL  156 (251)
Q Consensus        77 ~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll  156 (251)
                      +|+||++.+++.+||+||+.+....++....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||
T Consensus        81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illl  160 (218)
T cd03266          81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLL  160 (218)
T ss_pred             EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999999999999999999876655554555567789999999999989999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367         157 DEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  213 (251)
Q Consensus       157 DEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g  213 (251)
                      ||||++||+.+++.++++|++++ +|.|||++||+++++..+||++++|++|++++.|
T Consensus       161 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~  218 (218)
T cd03266         161 DEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG  218 (218)
T ss_pred             cCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence            99999999999999999999985 5899999999999999999999999999998653

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=3.4e-59  Score=394.23  Aligned_cols=225  Identities=30%  Similarity=0.499  Sum_probs=213.2

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      +++++|+|+|+ ++.|++|+||++++|+++|++|||||||||++|+|.|+++|++|+|.|+|.++..   ..+.+|||+|
T Consensus         3 L~ie~vtK~Fg-~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~---~~~~rIGyLP   78 (300)
T COG4152           3 LEIEGVTKSFG-DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ---EIKNRIGYLP   78 (300)
T ss_pred             eEEecchhccC-ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh---hhhhhcccCh
Confidence            57999999996 4889999999999999999999999999999999999999999999999999854   3467899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      .+..||+.+||.|.+.|++++++.+.++.++++..+|+++++.....+++.+||.|++|++.+..|++++|+++|||||+
T Consensus        79 EERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPF  158 (300)
T COG4152          79 EERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPF  158 (300)
T ss_pred             hhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhcC-cceEE
Q psy7367         161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFAR-GYYLS  229 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~-~~~~~  229 (251)
                      |||||.+.+.+.+.+.+++ +|.|||++||.|+.++++||++++|++|+.+.+|+.+.+++.++. ..+++
T Consensus       159 SGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gkk~~~ie  229 (300)
T COG4152         159 SGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRLVIE  229 (300)
T ss_pred             cCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcCCceEEEe
Confidence            9999999999999999997 599999999999999999999999999999999999999887765 34444

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=5.1e-60  Score=388.91  Aligned_cols=227  Identities=32%  Similarity=0.502  Sum_probs=205.0

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-Ch-HHhhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DM-TTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~-~~~~~~i~~   78 (251)
                      |.++|+.|+|+ ++.++++|||++++||++||+|||||||||.+.++.|+.+|++|+|.++|.+++. +. ...|..|||
T Consensus         5 L~a~~l~K~y~-kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigY   83 (243)
T COG1137           5 LVAENLAKSYK-KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGY   83 (243)
T ss_pred             EEehhhhHhhC-CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCccc
Confidence            46889999996 4789999999999999999999999999999999999999999999999999975 32 455779999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChH--HHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKD--LAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL  156 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll  156 (251)
                      +||++++|..+||+||+....+.+....+  +.+.+++++|+.|++.+..+++..+||||||+|+.|||||+.+|+++||
T Consensus        84 LpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLL  163 (243)
T COG1137          84 LPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILL  163 (243)
T ss_pred             ccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEe
Confidence            99999999999999999998887653333  4445688999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh-hcCcceE
Q psy7367         157 DEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS-FARGYYL  228 (251)
Q Consensus       157 DEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~~~  228 (251)
                      ||||+|+||.+...+.++++.++ +|..|+|+-|+..+...+|||.+++++|++.++|+|+++.+. .-+.+|+
T Consensus       164 DEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~~Vr~~YL  237 (243)
T COG1137         164 DEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDVRRVYL  237 (243)
T ss_pred             cCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcChhhhhhcc
Confidence            99999999999999999999997 599999999999999999999999999999999999877543 2234553

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=5.5e-58  Score=416.82  Aligned_cols=217  Identities=23%  Similarity=0.383  Sum_probs=197.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++++|++ +.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... ..++.|+|+|
T Consensus         3 L~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-~~~r~i~~v~   80 (353)
T PRK10851          3 IEIANIKKSFGR-TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH-ARDRKVGFVF   80 (353)
T ss_pred             EEEEEEEEEeCC-eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-HHHCCEEEEe
Confidence            578999999964 78999999999999999999999999999999999999999999999999985422 2357899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLK----QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL  156 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll  156 (251)
                      |++.+|+++||+||+.|+....    +.+..+..+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||
T Consensus        81 Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLL  160 (353)
T PRK10851         81 QHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLL  160 (353)
T ss_pred             cCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            9999999999999999976542    334455667899999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         157 DEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       157 DEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      ||||++||+..+..+.+.|+++. + |.|+|++|||++++..+|||+++|++|+++..|+++++.
T Consensus       161 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~  225 (353)
T PRK10851        161 DEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW  225 (353)
T ss_pred             eCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            99999999999999999999985 4 899999999999999999999999999999999987653

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.8e-58  Score=417.92  Aligned_cols=216  Identities=25%  Similarity=0.425  Sum_probs=198.2

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++++|++ +.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..... .++.|+|+|
T Consensus         4 l~i~~l~~~~~~-~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~-~~~~i~~v~   81 (369)
T PRK11000          4 VTLRNVTKAYGD-VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP-AERGVGMVF   81 (369)
T ss_pred             EEEEEEEEEeCC-eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH-hHCCEEEEe
Confidence            578999999964 779999999999999999999999999999999999999999999999999854222 356899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+|+++||+||+.|+...++....+..+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus        82 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPt  161 (369)
T PRK11000         82 QSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL  161 (369)
T ss_pred             CCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            99999999999999999876555555556678999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      ++||+.+++.+++.|+++. + |.|||++|||++++..+||++++|++|+++..|+++++
T Consensus       162 s~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i  221 (369)
T PRK11000        162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL  221 (369)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            9999999999999999984 4 89999999999999999999999999999999998765

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-57  Score=413.89  Aligned_cols=219  Identities=29%  Similarity=0.435  Sum_probs=198.9

Q ss_pred             CEEEeEEEEeC--C-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-Ch---HHhh
Q psy7367           1 MAIQNLSKRFP--N-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DM---TTIR   73 (251)
Q Consensus         1 l~i~~l~~~y~--~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~---~~~~   73 (251)
                      |+++|++++|+  + ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ..   ...+
T Consensus         2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~   81 (343)
T PRK11153          2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR   81 (343)
T ss_pred             EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence            57999999996  1 3579999999999999999999999999999999999999999999999999853 21   2346


Q ss_pred             cceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCE
Q psy7367          74 RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRT  153 (251)
Q Consensus        74 ~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~l  153 (251)
                      ++|||+||++.+++.+||.||+.++....+.+..+..+++.++++.++|.+..++++.+|||||||||+|||||+.+|++
T Consensus        82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~i  161 (343)
T PRK11153         82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKV  161 (343)
T ss_pred             cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            78999999999999999999999987665555555567789999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         154 VILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       154 lllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |||||||+|||+.++..++++|+++. + |+|||++|||++++.++||++++|++|++++.|+++++.
T Consensus       162 LlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~  229 (343)
T PRK11153        162 LLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF  229 (343)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            99999999999999999999999984 4 899999999999999999999999999999999887653

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=9.3e-58  Score=387.31  Aligned_cols=211  Identities=32%  Similarity=0.569  Sum_probs=191.8

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|++++|++ +++++|+||+|++| +++|+||||||||||+++|+|+++|++|+|.++|+++......+++.++|+|
T Consensus         1 i~~~~~~~~~~~-~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   78 (211)
T cd03264           1 LQLENLTKRYGK-KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP   78 (211)
T ss_pred             CEEEEEEEEECC-EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence            689999999964 67999999999999 9999999999999999999999999999999999987543345678899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+|+.+||.||+.+.....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||
T Consensus        79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt  158 (211)
T cd03264          79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPT  158 (211)
T ss_pred             CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            99999999999999998766554444445567889999999998889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367         161 SGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  213 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g  213 (251)
                      +|||+.+++.+.++|++++++.|||++|||++++.++|||+++|++|++++.|
T Consensus       159 ~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g  211 (211)
T cd03264         159 AGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG  211 (211)
T ss_pred             ccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence            99999999999999999876799999999999999999999999999998654

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-57  Score=417.41  Aligned_cols=217  Identities=26%  Similarity=0.415  Sum_probs=200.0

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++++|++ ..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... ..++.|||+|
T Consensus        20 l~l~~v~~~~~~-~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-~~~r~ig~vf   97 (377)
T PRK11607         20 LEIRNLTKSFDG-QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP-PYQRPINMMF   97 (377)
T ss_pred             EEEEeEEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HHHCCEEEEe
Confidence            578999999964 67999999999999999999999999999999999999999999999999985422 3467899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+|+++||+||+.|+.+..+.+..+.++++.++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||
T Consensus        98 Q~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~  177 (377)
T PRK11607         98 QSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPM  177 (377)
T ss_pred             CCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            99999999999999999877666666666778999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhh-hC-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         161 SGVDPYSRRSIWELLIKY-KK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l-~~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      ++||+..+..+.+.|+++ ++ |.|+|++|||++++..+|||+++|++|+++..|+++++.
T Consensus       178 s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~  238 (377)
T PRK11607        178 GALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIY  238 (377)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence            999999999999999887 33 899999999999999999999999999999999987653

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=9.7e-59  Score=392.40  Aligned_cols=220  Identities=29%  Similarity=0.416  Sum_probs=200.8

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC--hHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD--MTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~~~i~~   78 (251)
                      +++++|+|+|| +..+++||||++++||+++||||||||||||+|+|+|+++|++|+|.++|+++...  ....+..|+.
T Consensus         5 L~v~~l~k~FG-Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~R   83 (250)
T COG0411           5 LEVRGLSKRFG-GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIAR   83 (250)
T ss_pred             eeeccceeecC-CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcccee
Confidence            46899999997 48899999999999999999999999999999999999999999999999999752  2345778999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhc------------CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLK------------QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMA  146 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~------------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~a  146 (251)
                      -||.+.+|++|||.||+..+...+            ....++..+++.++|+.+||.+.++++.++||+|||+|+.||||
T Consensus        84 TFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArA  163 (250)
T COG0411          84 TFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARA  163 (250)
T ss_pred             ecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHH
Confidence            999999999999999998864321            11245667889999999999999999999999999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhC--CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      |+.+|++||||||.+||.+.....+.++|+++++  |.||++|.|||..+..+||||+||+.|+++++|+|+++.+.
T Consensus       164 La~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~d  240 (250)
T COG0411         164 LATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNN  240 (250)
T ss_pred             HhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhcC
Confidence            9999999999999999999999999999999963  69999999999999999999999999999999999987653

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=1.8e-57  Score=391.49  Aligned_cols=217  Identities=28%  Similarity=0.440  Sum_probs=194.3

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-hHH-hhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MTT-IRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~~-~~~~i~~   78 (251)
                      ++++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ... .++.++|
T Consensus         1 l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (236)
T cd03219           1 LEVRGLTKRFGG-LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR   79 (236)
T ss_pred             CeeeeeEEEECC-EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence            579999999964 6799999999999999999999999999999999999999999999999988542 222 3467999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCC----------ChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQV----------PKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~----------~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      +||++.+++.+||+||+.+.......          ......+++.++++.+++.+..++++.+|||||||||+|||||+
T Consensus        80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~  159 (236)
T cd03219          80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALA  159 (236)
T ss_pred             EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHh
Confidence            99999999999999999887543321          12334557889999999998899999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      .+|+++||||||++||+.++..++++|++++ +|+|||++|||++++..+||++++|++|+++..|+++.+
T Consensus       160 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  230 (236)
T cd03219         160 TDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV  230 (236)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence            9999999999999999999999999999986 689999999999999999999999999999999987655

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=2.1e-57  Score=390.18  Aligned_cols=217  Identities=33%  Similarity=0.533  Sum_probs=195.3

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHH-hhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTT-IRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~-~~~~i~~   78 (251)
                      ++++|++++|+ ++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. .... .++.++|
T Consensus         1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (232)
T cd03218           1 LRAENLSKRYG-KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY   79 (232)
T ss_pred             CeEEEEEEEeC-CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence            57999999996 4679999999999999999999999999999999999999999999999998753 2222 3467999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE  158 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE  158 (251)
                      +||++.+++.+|++||+.+....++........++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||
T Consensus        80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE  159 (232)
T cd03218          80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDE  159 (232)
T ss_pred             ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence            99999999999999999886554444444445678899999999998999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         159 PTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       159 Pt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      ||+|||+.+++.++++|+++. ++.|||++|||++++..+||++++|++|+++..|+++.+
T Consensus       160 Pt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  220 (232)
T cd03218         160 PFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI  220 (232)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence            999999999999999999985 589999999999999999999999999999999987654

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=1.6e-57  Score=393.11  Aligned_cols=217  Identities=24%  Similarity=0.394  Sum_probs=193.7

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|++++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... ..++.++|+|
T Consensus         3 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~i~~v~   80 (239)
T cd03296           3 IEVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVP-VQERNVGFVF   80 (239)
T ss_pred             EEEEeEEEEECC-EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-ccccceEEEe
Confidence            478999999964 78999999999999999999999999999999999999999999999999875321 2246799999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCC----ChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQV----PKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL  156 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll  156 (251)
                      |++.+++.+||.||+.+.....+.    ...+..+++.++++.+++.+..++++.+||+|||||++|||||+.+|++|||
T Consensus        81 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll  160 (239)
T cd03296          81 QHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLL  160 (239)
T ss_pred             cCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            999999889999999886544322    2333445688999999999888999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         157 DEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       157 DEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      ||||+|||+.+++.++++|.+++ + |+|||++|||++++..+||++++|++|+++..|+++.+.
T Consensus       161 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  225 (239)
T cd03296         161 DEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY  225 (239)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence            99999999999999999999984 3 899999999999999999999999999999999887653

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=1.8e-57  Score=385.82  Aligned_cols=211  Identities=30%  Similarity=0.460  Sum_probs=191.0

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..+++++|+|
T Consensus         1 i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~-~~~~~i~~~~   78 (213)
T cd03301           1 VELENVTKRFGN-VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLP-PKDRDIAMVF   78 (213)
T ss_pred             CEEEeeEEEECC-eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-cccceEEEEe
Confidence            689999999964 68999999999999999999999999999999999999999999999999875321 1246799999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++.+|++||+.++....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||
T Consensus        79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt  158 (213)
T cd03301          79 QNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPL  158 (213)
T ss_pred             cChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            99999988999999988765544444555667889999999998899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367         161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  213 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g  213 (251)
                      +|||+.+++.++++|+++. + |.|||++|||++++..+||++++|++|++++.|
T Consensus       159 ~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         159 SNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG  213 (213)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence            9999999999999999984 3 899999999999999999999999999998765

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=2.2e-57  Score=391.95  Aligned_cols=219  Identities=28%  Similarity=0.444  Sum_probs=193.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC----hHHhhcce
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD----MTTIRRSL   76 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~----~~~~~~~i   76 (251)
                      ++++|++++|++++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...    ....++.+
T Consensus         1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i   80 (241)
T cd03256           1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI   80 (241)
T ss_pred             CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence            57999999996326799999999999999999999999999999999999999999999999987532    23456789


Q ss_pred             EEEccCCCCCCCCCHHHHHHHHHHh--------cCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          77 GVCPQYNALFDKLTVEEHMWFYSQL--------KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        77 ~~v~q~~~l~~~ltv~e~l~~~~~~--------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      +|+||++.+++.+||.||+.+....        .+.......+++.++++.+++.+..++++.+|||||||||+|||||+
T Consensus        81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~  160 (241)
T cd03256          81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM  160 (241)
T ss_pred             EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHh
Confidence            9999999999989999999875321        11122334457889999999998889999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      .+|++|||||||+|||+.++..++++|+++. + |+|||++|||++++..+||++++|++|+++..|+++++.
T Consensus       161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  233 (241)
T cd03256         161 QQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT  233 (241)
T ss_pred             cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence            9999999999999999999999999999984 4 899999999999999999999999999999999887653

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=1.4e-57  Score=387.85  Aligned_cols=208  Identities=27%  Similarity=0.454  Sum_probs=185.9

Q ss_pred             CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh----HH-h
Q psy7367           1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM----TT-I   72 (251)
Q Consensus         1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~----~~-~   72 (251)
                      |+++|++++|+++   +.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....    .. .
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~   80 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR   80 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence            6899999999632   57999999999999999999999999999999999999999999999999875321    11 3


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR  152 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~  152 (251)
                      ++.++|+||++.+|+.+||+||+.+....++.......+++.++++.+++.+..++++.+||||||||++|||||+.+|+
T Consensus        81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~  160 (218)
T cd03255          81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK  160 (218)
T ss_pred             hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCC
Confidence            46899999999999999999999987655544444445678899999999988899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEE
Q psy7367         153 TVILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKL  209 (251)
Q Consensus       153 llllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i  209 (251)
                      +|||||||+|||+.+++.+.++|+++.  .|+|||++||+++++. +||++++|++|++
T Consensus       161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i  218 (218)
T cd03255         161 IILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI  218 (218)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence            999999999999999999999999984  3899999999999997 9999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.5e-57  Score=398.84  Aligned_cols=218  Identities=24%  Similarity=0.387  Sum_probs=195.2

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      |+++|++++|++++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ....+++.|+|+
T Consensus         5 l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v   84 (274)
T PRK13647          5 IEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLV   84 (274)
T ss_pred             EEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEE
Confidence            4789999999534679999999999999999999999999999999999999999999999999854 334556789999


Q ss_pred             ccCCC-CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367          80 PQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE  158 (251)
Q Consensus        80 ~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE  158 (251)
                      ||++. .++.+||.||+.|.....+.......+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||
T Consensus        85 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDE  164 (274)
T PRK13647         85 FQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDE  164 (274)
T ss_pred             ecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence            99973 34567999999986554445555556678999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         159 PTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       159 Pt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      ||++||+.++..++++|++++ +|.|||++|||++++.++|||+++|++|++++.|+++.+
T Consensus       165 Pt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  225 (274)
T PRK13647        165 PMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL  225 (274)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence            999999999999999999985 589999999999999999999999999999999998654

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=1.8e-57  Score=413.90  Aligned_cols=211  Identities=27%  Similarity=0.427  Sum_probs=194.2

Q ss_pred             EEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHh----hcceEEEccC
Q psy7367           8 KRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTI----RRSLGVCPQY   82 (251)
Q Consensus         8 ~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~----~~~i~~v~q~   82 (251)
                      |+|+ ++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.. ....+    ++.|+|+||+
T Consensus         1 ~~~~-~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~   79 (363)
T TIGR01186         1 KKTG-GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ   79 (363)
T ss_pred             CccC-CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence            4675 4779999999999999999999999999999999999999999999999999864 33333    6789999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCC
Q psy7367          83 NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSG  162 (251)
Q Consensus        83 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~g  162 (251)
                      +.+|+++||+||+.|.....+.+..+..+++.++++.++|..+.++++.+|||||||||+|||||+.+|++|||||||++
T Consensus        80 ~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~sa  159 (363)
T TIGR01186        80 FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSA  159 (363)
T ss_pred             CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            99999999999999987776666666677899999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         163 VDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       163 LD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |||.+++.+.+.+.+++ + ++|||++|||++++.++||||++|++|+++..|+++++.
T Consensus       160 LD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~  218 (363)
T TIGR01186       160 LDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEIL  218 (363)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence            99999999999999984 4 899999999999999999999999999999999987653

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=2.8e-57  Score=386.84  Aligned_cols=211  Identities=27%  Similarity=0.450  Sum_probs=191.0

Q ss_pred             CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceE
Q psy7367           1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~   77 (251)
                      ++++|++++|++.   +++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++..    .++.++
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~----~~~~i~   76 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG----PGPDRG   76 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc----ccCcEE
Confidence            5799999999631   579999999999999999999999999999999999999999999999998742    356799


Q ss_pred             EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367          78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD  157 (251)
Q Consensus        78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD  157 (251)
                      |+||++.+++.+|++||+.+....++.......+++.++++.+++.+..++++.+||||||||++|||||+.+|+++|||
T Consensus        77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLD  156 (220)
T cd03293          77 YVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLD  156 (220)
T ss_pred             EEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence            99999999988999999998765554444445567889999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhh-hC-CCeEEEEeCCHHHHHhhcCEEEEee--CCEEEeecCH
Q psy7367         158 EPTSGVDPYSRRSIWELLIKY-KK-GRTVILTTHYMDEADLLGDRIAIIA--AGKLQCCGSS  215 (251)
Q Consensus       158 EPt~gLD~~~~~~l~~~l~~l-~~-g~tiii~tHd~~~~~~~~d~i~~l~--~G~i~~~g~~  215 (251)
                      |||+|||+.++..++++|+++ ++ |.|||++||+++++..+||++++|+  +|++++.++.
T Consensus       157 EPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~  218 (220)
T cd03293         157 EPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV  218 (220)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence            999999999999999999998 34 8999999999999999999999999  7999887754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=4e-57  Score=388.89  Aligned_cols=217  Identities=26%  Similarity=0.407  Sum_probs=195.4

Q ss_pred             CEEEeEEEEeCCCc----ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-h---HHh
Q psy7367           1 MAIQNLSKRFPNGK----LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-M---TTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~----~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~---~~~   72 (251)
                      ++++|++++|++ +    ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .   ...
T Consensus         2 i~~~~l~~~~~~-~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (233)
T cd03258           2 IELKNVSKVFGD-TGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA   80 (233)
T ss_pred             eEEecceEEccC-CCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence            578999999964 4    799999999999999999999999999999999999999999999999988532 1   234


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR  152 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~  152 (251)
                      ++.++|+||++.+|+.+|++||+.+....++.......+.+.++++.+++.+..++++.+||||||||++|||||+.+|+
T Consensus        81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~  160 (233)
T cd03258          81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK  160 (233)
T ss_pred             HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence            67899999999999989999999886554444444445678899999999998999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         153 TVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       153 llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      ++||||||+|||+.++..++++|++++ + |+|||++||+++++..+||++++|++|++++.|+++.+
T Consensus       161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (233)
T cd03258         161 VLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV  228 (233)
T ss_pred             EEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            999999999999999999999999984 4 89999999999999999999999999999999987654

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=3e-57  Score=383.93  Aligned_cols=209  Identities=30%  Similarity=0.497  Sum_probs=190.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|++++|+ ++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..   ..++.++|+|
T Consensus         1 l~~~~l~~~~~-~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---~~~~~i~~~~   76 (210)
T cd03269           1 LEVENVTKRFG-RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI---AARNRIGYLP   76 (210)
T ss_pred             CEEEEEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH---HHHccEEEec
Confidence            68999999996 4779999999999999999999999999999999999999999999999987642   3467899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++.+|++||+.++...++.......+++.++++.+++.+..++++.+||||||||++||+||+.+|+++||||||
T Consensus        77 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~  156 (210)
T cd03269          77 EERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPF  156 (210)
T ss_pred             cCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            99999999999999988765555444455667889999999998889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367         161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  213 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g  213 (251)
                      +|||+.+++.++++|++++ ++.|||++||+++++..+||++++|++|++++.|
T Consensus       157 ~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~  210 (210)
T cd03269         157 SGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG  210 (210)
T ss_pred             cCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence            9999999999999999985 5899999999999999999999999999998653

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.2e-57  Score=399.75  Aligned_cols=218  Identities=28%  Similarity=0.463  Sum_probs=195.1

Q ss_pred             CEEEeEEEEeCCC----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC---hHHhh
Q psy7367           1 MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD---MTTIR   73 (251)
Q Consensus         1 l~i~~l~~~y~~~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~---~~~~~   73 (251)
                      |+++||+++|++.    +++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...   ....+
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   82 (287)
T PRK13637          3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR   82 (287)
T ss_pred             EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence            5789999999632    3699999999999999999999999999999999999999999999999998542   23567


Q ss_pred             cceEEEccCCC-CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC--cccCCCCCcCChhHHHHHHHHHHHccC
Q psy7367          74 RSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP--HKRTSLANTLSGGMQRKLSVAMAFIGG  150 (251)
Q Consensus        74 ~~i~~v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~kqrv~ia~al~~~  150 (251)
                      ++|||+||++. .+..+||+||+.++....+...++..+++.++++.+||.  +..++++.+||||||||++|||||+.+
T Consensus        83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~  162 (287)
T PRK13637         83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAME  162 (287)
T ss_pred             hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcC
Confidence            89999999973 233579999999876655666666667889999999997  678999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         151 SRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       151 p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      |++|||||||+|||+.++..++++|++++ + |.|||++|||++++..+|||+++|++|++++.|+++++
T Consensus       163 P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~  232 (287)
T PRK13637        163 PKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV  232 (287)
T ss_pred             CCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            99999999999999999999999999984 4 89999999999999999999999999999999998765

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=3.6e-57  Score=387.75  Aligned_cols=214  Identities=26%  Similarity=0.412  Sum_probs=190.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC-----CCCeeEEEEcceeCCC-C--hHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML-----PVSSGTAKIYNHDIRT-D--MTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~-----~p~~G~i~~~g~~~~~-~--~~~~   72 (251)
                      |+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++     +|++|+|.++|+++.. .  ...+
T Consensus         1 i~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~   79 (227)
T cd03260           1 IELRDLNVYYGD-KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL   79 (227)
T ss_pred             CEEEEEEEEcCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence            689999999964 68999999999999999999999999999999999999     9999999999998753 2  3345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHcCCCcccCCC--CCcCChhHHHHHHHHHHHcc
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK-DLAQLEISNMIVDLGIPHKRTSL--ANTLSGGMQRKLSVAMAFIG  149 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~kqrv~ia~al~~  149 (251)
                      +++++|+||++.++ .+||+||+.+.....+... ....+++.++++.+++.+..+++  +.+||||||||++|||||+.
T Consensus        80 ~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~  158 (227)
T cd03260          80 RRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN  158 (227)
T ss_pred             HhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc
Confidence            67899999999888 7899999988765443322 22456788999999998877766  59999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHH
Q psy7367         150 GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  216 (251)
Q Consensus       150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~  216 (251)
                      +|++|||||||+|||+.+++.++++|+++++..|||++|||++++..+||++++|++|++++.|+++
T Consensus       159 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~  225 (227)
T cd03260         159 EPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTE  225 (227)
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcc
Confidence            9999999999999999999999999999854499999999999999999999999999999988764

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=4.5e-57  Score=383.52  Aligned_cols=209  Identities=29%  Similarity=0.484  Sum_probs=188.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC----hHHhhcce
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD----MTTIRRSL   76 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~----~~~~~~~i   76 (251)
                      ++++|++++|++++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...    ...+++.+
T Consensus         1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i   80 (214)
T cd03292           1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI   80 (214)
T ss_pred             CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence            57999999995435799999999999999999999999999999999999999999999999988532    12356789


Q ss_pred             EEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367          77 GVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL  156 (251)
Q Consensus        77 ~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll  156 (251)
                      +|+||++.+++.+|+.||+.++....+...+...+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||
T Consensus        81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll  160 (214)
T cd03292          81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIA  160 (214)
T ss_pred             EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEE
Confidence            99999999999999999999876554444444556788999999999888999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEE
Q psy7367         157 DEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKL  209 (251)
Q Consensus       157 DEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i  209 (251)
                      ||||++||+.+++.+.+.|++++ +|.|||++||+++++..+||++++|++|++
T Consensus       161 DEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         161 DEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL  214 (214)
T ss_pred             eCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            99999999999999999999985 589999999999999999999999999974

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=8.3e-57  Score=389.31  Aligned_cols=219  Identities=32%  Similarity=0.514  Sum_probs=196.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      ++++|++++|++.+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+++.++|+
T Consensus         1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   80 (242)
T cd03295           1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV   80 (242)
T ss_pred             CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence            5799999999632579999999999999999999999999999999999999999999999998753 334456789999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc--ccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH--KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD  157 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD  157 (251)
                      ||++.+++.+|++||+.++....+.......+++.++++.+++.+  ..++++.+||||||||++|||||+.+|++||||
T Consensus        81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  160 (242)
T cd03295          81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMD  160 (242)
T ss_pred             ccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence            999999998999999988765544444445567889999999986  789999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         158 EPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       158 EPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |||+|||+.++..+.++|++++ + |+|||++||+++++..+||++++|++|+++..|+++.+.
T Consensus       161 EPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  224 (242)
T cd03295         161 EPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL  224 (242)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence            9999999999999999999984 4 899999999999999999999999999999999877653

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=3.6e-57  Score=382.93  Aligned_cols=207  Identities=28%  Similarity=0.531  Sum_probs=188.4

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++++|+ ++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..+++.++|+|
T Consensus         1 l~~~~l~~~~~-~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~i~~~~   78 (208)
T cd03268           1 LKTNDLTKTYG-KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN-IEALRRIGALI   78 (208)
T ss_pred             CEEEEEEEEEC-CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch-HHHHhhEEEec
Confidence            68999999996 47899999999999999999999999999999999999999999999999987533 34567899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++.+||.||+.++...++..    .+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||
T Consensus        79 q~~~~~~~~tv~e~l~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt  154 (208)
T cd03268          79 EAPGFYPNLTARENLRLLARLLGIR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPT  154 (208)
T ss_pred             CCCccCccCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence            9999999999999998876544321    346788999999999899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367         161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  213 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g  213 (251)
                      +|||+.+++.++++|++++ +|.|||++|||++++..+||++++|++|++++.|
T Consensus       155 ~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g  208 (208)
T cd03268         155 NGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG  208 (208)
T ss_pred             ccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence            9999999999999999985 5899999999999999999999999999998654

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=4.4e-57  Score=383.76  Aligned_cols=208  Identities=28%  Similarity=0.483  Sum_probs=187.3

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC----hHHhhcce
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD----MTTIRRSL   76 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~----~~~~~~~i   76 (251)
                      ++++|++++|++++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...    ...+++.+
T Consensus         2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i   81 (214)
T TIGR02673         2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI   81 (214)
T ss_pred             EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence            57899999994336799999999999999999999999999999999999999999999999988531    12356789


Q ss_pred             EEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367          77 GVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL  156 (251)
Q Consensus        77 ~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll  156 (251)
                      +|+||++.+++.+|+.||+.+.....+.......+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||
T Consensus        82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllL  161 (214)
T TIGR02673        82 GVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLA  161 (214)
T ss_pred             EEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEE
Confidence            99999999998899999999876554444444556788999999999888999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCE
Q psy7367         157 DEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGK  208 (251)
Q Consensus       157 DEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~  208 (251)
                      ||||+|||+.++..+.++|++++ +|.|||++||+++++..+||++++|++|+
T Consensus       162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       162 DEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR  214 (214)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence            99999999999999999999985 58999999999999999999999999885

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=1.2e-56  Score=386.86  Aligned_cols=219  Identities=26%  Similarity=0.455  Sum_probs=195.7

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.......++.++|+|
T Consensus         2 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~   80 (236)
T TIGR03864         2 LEVAGLSFAYG-ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF   80 (236)
T ss_pred             EEEEeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence            57899999996 47899999999999999999999999999999999999999999999999987543223346899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++.+|++||+.+....++.......+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||
T Consensus        81 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~  160 (236)
T TIGR03864        81 QQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPT  160 (236)
T ss_pred             CCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            99998888999999988765544444445567889999999998899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         161 SGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      +|||+.+++.++++|++++  +|.|||++||+++++.. ||++++|++|++++.++++.+...
T Consensus       161 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~  222 (236)
T TIGR03864       161 VGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAELRGA  222 (236)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHHHHH
Confidence            9999999999999999985  48999999999999975 999999999999999998766543

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=6.4e-57  Score=415.02  Aligned_cols=217  Identities=22%  Similarity=0.375  Sum_probs=196.7

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      |+++||+++|+ ++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.. ...++++++||+
T Consensus         4 L~~~nls~~y~-~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v   82 (402)
T PRK09536          4 IDVSDLSVEFG-DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASV   82 (402)
T ss_pred             EEEeeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEE
Confidence            57899999996 4789999999999999999999999999999999999999999999999999864 445667889999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLK----QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI  155 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll  155 (251)
                      +|++.+++.+||+||+.++...+    ........++++++++.+++.+..++++.+||||||||++|||||+++|++||
T Consensus        83 ~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLL  162 (402)
T PRK09536         83 PQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLL  162 (402)
T ss_pred             ccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            99999988999999998854211    11123445678999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         156 LDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       156 lDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      |||||+|||+.++..++++|+++. +|.|||++|||++++.++|||+++|++|+++..|+++++
T Consensus       163 LDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev  226 (402)
T PRK09536        163 LDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADV  226 (402)
T ss_pred             EECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            999999999999999999999986 589999999999999999999999999999999998753

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-56  Score=401.19  Aligned_cols=218  Identities=27%  Similarity=0.413  Sum_probs=194.5

Q ss_pred             CEEEeEEEEeCCC----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC---------
Q psy7367           1 MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT---------   67 (251)
Q Consensus         1 l~i~~l~~~y~~~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~---------   67 (251)
                      |+++|++++|+++    ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..         
T Consensus         3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   82 (305)
T PRK13651          3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK   82 (305)
T ss_pred             EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence            5789999999632    259999999999999999999999999999999999999999999999876521         


Q ss_pred             ----------------ChHHhhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCC
Q psy7367          68 ----------------DMTTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTS  128 (251)
Q Consensus        68 ----------------~~~~~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~  128 (251)
                                      ....+++.|||+||++  .++ ..||+||+.|+....+.+.++..+++.++++.+||. +..++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~  161 (305)
T PRK13651         83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR  161 (305)
T ss_pred             cccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence                            1235578899999986  444 579999999876655666666777899999999997 78899


Q ss_pred             CCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCC
Q psy7367         129 LANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAG  207 (251)
Q Consensus       129 ~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G  207 (251)
                      ++.+|||||||||+||+||+.+|++|||||||++||+.++..++++|++++ +|.|||++|||++++.++|||+++|++|
T Consensus       162 ~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G  241 (305)
T PRK13651        162 SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDG  241 (305)
T ss_pred             ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECC
Confidence            999999999999999999999999999999999999999999999999985 5999999999999999999999999999


Q ss_pred             EEEeecCHHHHH
Q psy7367         208 KLQCCGSSVFLK  219 (251)
Q Consensus       208 ~i~~~g~~~~~~  219 (251)
                      ++++.|+++++.
T Consensus       242 ~i~~~g~~~~~~  253 (305)
T PRK13651        242 KIIKDGDTYDIL  253 (305)
T ss_pred             EEEEECCHHHHh
Confidence            999999987653

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-56  Score=398.56  Aligned_cols=217  Identities=29%  Similarity=0.480  Sum_probs=194.1

Q ss_pred             CEEEeEEEEeCCC----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-----ChHH
Q psy7367           1 MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-----DMTT   71 (251)
Q Consensus         1 l~i~~l~~~y~~~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-----~~~~   71 (251)
                      ++++|++++|++.    +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..     ....
T Consensus         3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (290)
T PRK13634          3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP   82 (290)
T ss_pred             EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence            5789999999632    469999999999999999999999999999999999999999999999998842     2335


Q ss_pred             hhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          72 IRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        72 ~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      .++.|||+||++  .++ ..||+||+.|+....+....+..+++.++++.++|. +..++++.+|||||||||+|||||+
T Consensus        83 ~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~  161 (290)
T PRK13634         83 LRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA  161 (290)
T ss_pred             HHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence            567899999987  455 479999999876555555666667789999999997 6779999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      .+|++|||||||+|||+.++..++++|+++. + |.|||++|||++++.++|||+++|++|++++.|+++++
T Consensus       162 ~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~  233 (290)
T PRK13634        162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI  233 (290)
T ss_pred             cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999999999999984 4 89999999999999999999999999999999998765

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=9.6e-57  Score=383.50  Aligned_cols=215  Identities=28%  Similarity=0.484  Sum_probs=191.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHH-hhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTT-IRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~-~~~~i~~   78 (251)
                      |+++|++++|++ +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. .... .++.++|
T Consensus         1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (222)
T cd03224           1 LEVENLNAGYGK-SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY   79 (222)
T ss_pred             CEEeeEEeecCC-eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence            689999999964 679999999999999999999999999999999999999999999999998754 2222 3567999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHc-CCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL-GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD  157 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD  157 (251)
                      +||++.+++.+|++||+.+......  ..+...++.++++.+ ++.+..++++.+||||||||++|||||+.+|++||||
T Consensus        80 ~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  157 (222)
T cd03224          80 VPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLD  157 (222)
T ss_pred             eccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence            9999999999999999988765433  223345677888888 5888889999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         158 EPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       158 EPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      |||+|||+.++..++++|++++ ++.|||++|||++++..+||++++|++|+++..|+++.+
T Consensus       158 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (222)
T cd03224         158 EPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL  219 (222)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence            9999999999999999999986 589999999999999999999999999999998887654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=1.8e-56  Score=386.55  Aligned_cols=218  Identities=23%  Similarity=0.426  Sum_probs=195.4

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC---ChHHhhcceE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT---DMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~~~i~   77 (251)
                      ++++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++..   ....+++.++
T Consensus         2 l~~~~l~~~~~~-~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   80 (240)
T PRK09493          2 IEFKNVSKHFGP-TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG   80 (240)
T ss_pred             EEEEeEEEEECC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence            578999999964 679999999999999999999999999999999999999999999999998753   1234567899


Q ss_pred             EEccCCCCCCCCCHHHHHHHHHH-hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367          78 VCPQYNALFDKLTVEEHMWFYSQ-LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL  156 (251)
Q Consensus        78 ~v~q~~~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll  156 (251)
                      |+||++.+++.+||+||+.+... ..+....+..+++.++++.+++.+..++++.+||+|||||++|||||+.+|+++||
T Consensus        81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll  160 (240)
T PRK09493         81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLF  160 (240)
T ss_pred             EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999999988999999987542 23334444556788999999999888999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         157 DEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       157 DEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      ||||+|||+.++..++++|++++ +|+|||++||+++++..+||++++|++|++++.|++.++.
T Consensus       161 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  224 (240)
T PRK09493        161 DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI  224 (240)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence            99999999999999999999985 5899999999999999999999999999999999877653

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.6e-56  Score=387.30  Aligned_cols=217  Identities=27%  Similarity=0.403  Sum_probs=194.7

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----eeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS-----SGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~-----~G~i~~~g~~~~~---~~~~~   72 (251)
                      ++++|++++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|+     +|+|+++|+++..   ....+
T Consensus         2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~   80 (247)
T TIGR00972         2 IEIENLNLFYGE-KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL   80 (247)
T ss_pred             EEEEEEEEEECC-eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence            579999999964 67999999999999999999999999999999999999998     9999999998753   23345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ-VPKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      ++.++|+||++.+++ +|++||+.+.....+ ....+..+++.++++.+++.    +..++++.+||||||||++|||||
T Consensus        81 ~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral  159 (247)
T TIGR00972        81 RRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL  159 (247)
T ss_pred             HhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence            678999999999988 999999988655443 23344556788999999998    778899999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +.+|+++||||||+|||+.++..++++|++++++.|||++||+++++..+||++++|++|+++..|+++++.
T Consensus       160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  231 (247)
T TIGR00972       160 AVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF  231 (247)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999865699999999999999999999999999999999887653

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=1.6e-56  Score=382.76  Aligned_cols=211  Identities=24%  Similarity=0.389  Sum_probs=189.3

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-Ch---HHhhcce
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DM---TTIRRSL   76 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~---~~~~~~i   76 (251)
                      |+++|++++|++++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..   ..+++.+
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i   81 (222)
T PRK10908          2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI   81 (222)
T ss_pred             EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence            5789999999323679999999999999999999999999999999999999999999999998753 11   2356789


Q ss_pred             EEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367          77 GVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL  156 (251)
Q Consensus        77 ~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll  156 (251)
                      +|+||++.+++.+|+.||+.+.....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||
T Consensus        82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll  161 (222)
T PRK10908         82 GMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLA  161 (222)
T ss_pred             EEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            99999999888899999998876554444444556788999999999888999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEe
Q psy7367         157 DEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQC  211 (251)
Q Consensus       157 DEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~  211 (251)
                      ||||++||+.+++.++++|.+++ ++.|||++|||++++..+||++++|++|+++.
T Consensus       162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        162 DEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             eCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence            99999999999999999999985 58999999999999999999999999999863

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.3e-56  Score=396.27  Aligned_cols=218  Identities=25%  Similarity=0.444  Sum_probs=195.1

Q ss_pred             CEEEeEEEEeCCC----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-----ChHH
Q psy7367           1 MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-----DMTT   71 (251)
Q Consensus         1 l~i~~l~~~y~~~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-----~~~~   71 (251)
                      |+++|++++|+.+    +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++..     ....
T Consensus         2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   81 (288)
T PRK13643          2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP   81 (288)
T ss_pred             EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence            5799999999632    259999999999999999999999999999999999999999999999999742     2235


Q ss_pred             hhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          72 IRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        72 ~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      .++.+||+||++  .+|+ .||.||+.|+....+.+..+..+++.++++.++|. ...++++.+||||||||++|||||+
T Consensus        82 ~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~  160 (288)
T PRK13643         82 VRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILA  160 (288)
T ss_pred             HHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHH
Confidence            678899999987  5665 69999999876655555666667889999999996 5778999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      .+|++|||||||+|||+.++..+.++|++++ +|.|||++|||++++..+||||++|++|++++.|+++++.
T Consensus       161 ~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~  232 (288)
T PRK13643        161 MEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVF  232 (288)
T ss_pred             hCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            9999999999999999999999999999986 5899999999999999999999999999999999987653

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.6e-56  Score=395.76  Aligned_cols=218  Identities=26%  Similarity=0.426  Sum_probs=193.7

Q ss_pred             CEEEeEEEEeCCC----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-----ChHH
Q psy7367           1 MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-----DMTT   71 (251)
Q Consensus         1 l~i~~l~~~y~~~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-----~~~~   71 (251)
                      ++++|++++|++.    +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..     ....
T Consensus         3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   82 (287)
T PRK13641          3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK   82 (287)
T ss_pred             EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence            4789999999632    469999999999999999999999999999999999999999999999998742     1234


Q ss_pred             hhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          72 IRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        72 ~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      .++.|+|+||++  .++ .+||.||+.+....++...++..+++.++++.++|. ...++++.+||||||||++|||||+
T Consensus        83 ~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~  161 (287)
T PRK13641         83 LRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMA  161 (287)
T ss_pred             HHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHH
Confidence            567899999997  355 589999998865544445555566789999999997 6889999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      .+|++|||||||+|||+.++..+.++|++++ +|.|||++|||++++..+||++++|++|+++..|+++.+.
T Consensus       162 ~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  233 (287)
T PRK13641        162 YEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIF  233 (287)
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            9999999999999999999999999999985 5899999999999999999999999999999999987653

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=2e-56  Score=403.53  Aligned_cols=219  Identities=20%  Similarity=0.338  Sum_probs=195.6

Q ss_pred             CEEEeEEEEeCC------------CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC
Q psy7367           1 MAIQNLSKRFPN------------GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD   68 (251)
Q Consensus         1 l~i~~l~~~y~~------------~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~   68 (251)
                      |+++||+++|+.            ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++...
T Consensus         9 l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~   88 (331)
T PRK15079          9 LEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGM   88 (331)
T ss_pred             EEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcC
Confidence            579999999952            14699999999999999999999999999999999999999999999999998542


Q ss_pred             ----hHHhhcceEEEccCC--CCCCCCCHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHH
Q psy7367          69 ----MTTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLK--QVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQR  139 (251)
Q Consensus        69 ----~~~~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kq  139 (251)
                          ...++++|+|+||++  .+++.+|+.||+.+....+  +....+..+++.++++.+++. ...++++.+|||||+|
T Consensus        89 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~Q  168 (331)
T PRK15079         89 KDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQ  168 (331)
T ss_pred             CHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHH
Confidence                123567899999998  6888899999998876543  345556667889999999995 5779999999999999


Q ss_pred             HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHH
Q psy7367         140 KLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  217 (251)
Q Consensus       140 rv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~  217 (251)
                      ||+|||||+.+|++||+||||++||+.++..++++|++++ + |.|||++|||++++.++|||+++|++|++++.|++++
T Consensus       169 Rv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~  248 (331)
T PRK15079        169 RIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDE  248 (331)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            9999999999999999999999999999999999999985 3 8999999999999999999999999999999999876


Q ss_pred             HH
Q psy7367         218 LK  219 (251)
Q Consensus       218 ~~  219 (251)
                      +.
T Consensus       249 i~  250 (331)
T PRK15079        249 VY  250 (331)
T ss_pred             HH
Confidence            54

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.2e-56  Score=394.77  Aligned_cols=218  Identities=26%  Similarity=0.412  Sum_probs=195.8

Q ss_pred             CEEEeEEEEeCC--CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367           1 MAIQNLSKRFPN--GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~--~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~   77 (251)
                      |+++|++++|++  .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ....++++++
T Consensus         5 l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~   84 (279)
T PRK13650          5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIG   84 (279)
T ss_pred             EEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhce
Confidence            578999999963  2459999999999999999999999999999999999999999999999999854 3345677899


Q ss_pred             EEccCC-CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367          78 VCPQYN-ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL  156 (251)
Q Consensus        78 ~v~q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll  156 (251)
                      |+||++ .+++.+||+||+.+.....+...++..+++.++++.++|.+..++++.+||||||||++|||||+.+|++|||
T Consensus        85 ~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlL  164 (279)
T PRK13650         85 MVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIIL  164 (279)
T ss_pred             EEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            999998 4667789999999876555555666667889999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         157 DEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       157 DEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      ||||+|||+.++..++++|++++ + |+|||++|||++++. .|||+++|++|+++..|+++.+.
T Consensus       165 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~~g~~~~~~  228 (279)
T PRK13650        165 DEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRELF  228 (279)
T ss_pred             ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence            99999999999999999999985 4 899999999999995 79999999999999999987653

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=3.3e-56  Score=386.99  Aligned_cols=218  Identities=26%  Similarity=0.409  Sum_probs=194.8

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC---------hHH
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD---------MTT   71 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~---------~~~   71 (251)
                      ++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...         ...
T Consensus         4 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   82 (250)
T PRK11264          4 IEVKNLVKKFHG-QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ   82 (250)
T ss_pred             EEEeceEEEECC-eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence            578999999964 6799999999999999999999999999999999999999999999999987421         134


Q ss_pred             hhcceEEEccCCCCCCCCCHHHHHHHHHH-hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccC
Q psy7367          72 IRRSLGVCPQYNALFDKLTVEEHMWFYSQ-LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGG  150 (251)
Q Consensus        72 ~~~~i~~v~q~~~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~  150 (251)
                      +++.++|+||++.+++.+|+.||+.++.. ..+.......+++.++++.+++.+..++++.+||||||||++|||||+.+
T Consensus        83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~  162 (250)
T PRK11264         83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMR  162 (250)
T ss_pred             hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcC
Confidence            56789999999999988999999987543 23333444556788999999999888999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         151 SRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       151 p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |++|||||||+|||+.+++.++++|.++. +|.|||++|||++++..+||++++|++|+++..|+++++.
T Consensus       163 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  232 (250)
T PRK11264        163 PEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF  232 (250)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence            99999999999999999999999999985 4899999999999999999999999999999999887653

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=7.9e-57  Score=389.16  Aligned_cols=218  Identities=28%  Similarity=0.431  Sum_probs=192.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC----hHHhhcce
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD----MTTIRRSL   76 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~----~~~~~~~i   76 (251)
                      ++++|++++|+.++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...    ...+++.+
T Consensus         2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i   81 (243)
T TIGR02315         2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI   81 (243)
T ss_pred             eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence            57899999996236799999999999999999999999999999999999999999999999987531    12356789


Q ss_pred             EEEccCCCCCCCCCHHHHHHHHHHh--------cCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          77 GVCPQYNALFDKLTVEEHMWFYSQL--------KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        77 ~~v~q~~~l~~~ltv~e~l~~~~~~--------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      +|+||++.+++.+||.||+.+....        .+.......+++.++++.+++.+..++++.+||||||||++|||||+
T Consensus        82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~  161 (243)
T TIGR02315        82 GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALA  161 (243)
T ss_pred             EEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence            9999999999999999999764211        11112334567889999999998889999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      .+|++|||||||+|||+.+++.+.++|+++. + |+|||++||+++++.++||++++|++|+++..|+++.+
T Consensus       162 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  233 (243)
T TIGR02315       162 QQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL  233 (243)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence            9999999999999999999999999999984 4 89999999999999999999999999999999988655

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-57  Score=396.21  Aligned_cols=219  Identities=27%  Similarity=0.428  Sum_probs=203.6

Q ss_pred             CEEEeEEEEeCCCc-----------------------ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeE
Q psy7367           1 MAIQNLSKRFPNGK-----------------------LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT   57 (251)
Q Consensus         1 l~i~~l~~~y~~~~-----------------------~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~   57 (251)
                      ++++|++|-||.+.                       .-++|+||+|+.|||+.|+|-||||||||+|++++|++|++|+
T Consensus         5 i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~   84 (386)
T COG4175           5 IEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGE   84 (386)
T ss_pred             EEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCce
Confidence            47889999996421                       2578999999999999999999999999999999999999999


Q ss_pred             EEEcceeCCC-ChH---Hh-hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCc
Q psy7367          58 AKIYNHDIRT-DMT---TI-RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANT  132 (251)
Q Consensus        58 i~~~g~~~~~-~~~---~~-~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  132 (251)
                      |.++|+++.. +..   ++ |+++++|||.+.|+|+.||.||+.|++++.+.++++.++++.++|+.+||..+.+++|++
T Consensus        85 ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~e  164 (386)
T COG4175          85 ILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNE  164 (386)
T ss_pred             EEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCccc
Confidence            9999999864 222   33 468999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEE
Q psy7367         133 LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQ  210 (251)
Q Consensus       133 LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~  210 (251)
                      |||||||||.|||||+.+|++||+|||+|+|||--+.++-+.|.+++ + ++|||++|||++++.++.|||.+|++|+|+
T Consensus       165 LSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~iv  244 (386)
T COG4175         165 LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIV  244 (386)
T ss_pred             ccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEE
Confidence            99999999999999999999999999999999999999999999985 4 899999999999999999999999999999


Q ss_pred             eecCHHHHH
Q psy7367         211 CCGSSVFLK  219 (251)
Q Consensus       211 ~~g~~~~~~  219 (251)
                      ..|+|+++-
T Consensus       245 Q~Gtp~eIl  253 (386)
T COG4175         245 QVGTPEEIL  253 (386)
T ss_pred             EeCCHHHHH
Confidence            999998764

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=2e-56  Score=379.22  Aligned_cols=208  Identities=25%  Similarity=0.432  Sum_probs=187.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC---ChHHhhcceE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT---DMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~~~i~   77 (251)
                      ++++|++++|++ +.+|+++||++++|++++|+||||||||||+|+|+|+++|++|+|+++|+++..   ....+++.++
T Consensus         1 l~~~~l~~~~~~-~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   79 (213)
T cd03262           1 IEIKNLHKSFGD-FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG   79 (213)
T ss_pred             CEEEEEEEEECC-eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence            579999999964 689999999999999999999999999999999999999999999999998742   2234567899


Q ss_pred             EEccCCCCCCCCCHHHHHHHHHH-hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367          78 VCPQYNALFDKLTVEEHMWFYSQ-LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL  156 (251)
Q Consensus        78 ~v~q~~~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll  156 (251)
                      |+||++.+++.+|+.||+.++.. .++....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||
T Consensus        80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll  159 (213)
T cd03262          80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLF  159 (213)
T ss_pred             EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999999998999999988643 33334444556788999999999888999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEE
Q psy7367         157 DEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKL  209 (251)
Q Consensus       157 DEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i  209 (251)
                      ||||+|||+.+++.+.++|++++ .|.|||++||+++++.++||++++|++|++
T Consensus       160 DEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         160 DEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI  213 (213)
T ss_pred             eCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            99999999999999999999986 489999999999999999999999999974

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.9e-56  Score=383.04  Aligned_cols=213  Identities=23%  Similarity=0.382  Sum_probs=188.9

Q ss_pred             CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-hH---Hh-
Q psy7367           1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MT---TI-   72 (251)
Q Consensus         1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~---~~-   72 (251)
                      ++++|++++|+++   +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ..   .. 
T Consensus         6 l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~   85 (233)
T PRK11629          6 LQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELR   85 (233)
T ss_pred             EEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHH
Confidence            4789999999632   4699999999999999999999999999999999999999999999999988532 21   22 


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR  152 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~  152 (251)
                      ++.++|+||++.+++.+|++||+.+...+.+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|+
T Consensus        86 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~  165 (233)
T PRK11629         86 NQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPR  165 (233)
T ss_pred             hccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            36799999999999999999999986554444444555678899999999988899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367         153 TVILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  214 (251)
Q Consensus       153 llllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~  214 (251)
                      +|||||||+|||+.+++.++++|++++  +|.|||++|||++++.. +|++++|++|+++..++
T Consensus       166 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l~~G~i~~~~~  228 (233)
T PRK11629        166 LVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR-MSRQLEMRDGRLTAELS  228 (233)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hCEEEEEECCEEEEEec
Confidence            999999999999999999999999984  48999999999999987 47999999999998765

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=1.1e-56  Score=379.27  Aligned_cols=203  Identities=28%  Similarity=0.441  Sum_probs=180.8

Q ss_pred             EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEcc
Q psy7367           2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQ   81 (251)
Q Consensus         2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q   81 (251)
                      +++|++++|++++++|+++||+|++||+++|+|||||||||||++|+|+++|++|+|+++|+++..  ...+++++|+||
T Consensus         1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~i~~~~q   78 (205)
T cd03226           1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA--KERRKSIGYVMQ   78 (205)
T ss_pred             CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh--HHhhcceEEEec
Confidence            478999999532679999999999999999999999999999999999999999999999998743  345678999999


Q ss_pred             CCC-CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          82 YNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        82 ~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      ++. .++.+|+.||+.++....+.    ..+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||
T Consensus        79 ~~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt  154 (205)
T cd03226          79 DVDYQLFTDSVREELLLGLKELDA----GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT  154 (205)
T ss_pred             ChhhhhhhccHHHHHhhhhhhcCc----cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence            974 23457999999886543321    1246789999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEE
Q psy7367         161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQ  210 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~  210 (251)
                      +|||+.+++.+.++|++++ +|.|||++||+++++..+||++++|++|+++
T Consensus       155 ~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         155 SGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence            9999999999999999984 6899999999999999999999999999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=4.1e-56  Score=384.62  Aligned_cols=217  Identities=23%  Similarity=0.329  Sum_probs=193.5

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChH-HhhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMT-TIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~-~~~~~i~~   78 (251)
                      |+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ... ..++.++|
T Consensus         3 i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~   81 (242)
T TIGR03411         3 LYLEGLSVSFDG-FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR   81 (242)
T ss_pred             EEEEeeEEEcCC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence            578999999964 679999999999999999999999999999999999999999999999998754 222 23457999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccC
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLK--------QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGG  150 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~--------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~  150 (251)
                      +||++.+++.+||+||+.++....        +.......+++.++++.+++.+..++++.+|||||+|||+|||||+.+
T Consensus        82 ~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~  161 (242)
T TIGR03411        82 KFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQD  161 (242)
T ss_pred             eccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence            999999999999999998864321        112233456788999999999888999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         151 SRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       151 p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      |++|||||||+|||+.+++.++++|+++.++.|||++||+++++..+||++++|++|++++.|+++++
T Consensus       162 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~  229 (242)
T TIGR03411       162 PKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV  229 (242)
T ss_pred             CCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHH
Confidence            99999999999999999999999999987689999999999999999999999999999999987765

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=1.6e-56  Score=379.50  Aligned_cols=207  Identities=30%  Similarity=0.511  Sum_probs=183.8

Q ss_pred             EEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           2 AIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         2 ~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      +++|++++|++. +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+++.++|+
T Consensus         1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   80 (211)
T cd03225           1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV   80 (211)
T ss_pred             CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence            478999999531 579999999999999999999999999999999999999999999999998753 234556789999


Q ss_pred             ccCCC-CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367          80 PQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE  158 (251)
Q Consensus        80 ~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE  158 (251)
                      ||++. .++.+|+.||+.+.....+.......+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||
T Consensus        81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE  160 (211)
T cd03225          81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDE  160 (211)
T ss_pred             ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            99985 35678999999886554443444445678899999999988899999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCE
Q psy7367         159 PTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGK  208 (251)
Q Consensus       159 Pt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~  208 (251)
                      ||+|||+.+++.+++.|++++ +|.|||++|||++++..+||++++|++|+
T Consensus       161 Pt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~  211 (211)
T cd03225         161 PTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK  211 (211)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence            999999999999999999985 58999999999999999999999999884

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=4e-56  Score=391.07  Aligned_cols=218  Identities=22%  Similarity=0.353  Sum_probs=194.3

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-h---HHhhcce
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-M---TTIRRSL   76 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~---~~~~~~i   76 (251)
                      |+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... .   ...++.+
T Consensus         8 l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i   86 (269)
T PRK11831          8 VDMRGVSFTRG-NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRM   86 (269)
T ss_pred             EEEeCeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcE
Confidence            57899999996 47899999999999999999999999999999999999999999999999987531 1   2345689


Q ss_pred             EEEccCCCCCCCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367          77 GVCPQYNALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI  155 (251)
Q Consensus        77 ~~v~q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll  155 (251)
                      +|+||++.+++.+|+.||+.+..... .........++.++++.+++.+..++++.+|||||||||+|||||+.+|++||
T Consensus        87 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lll  166 (269)
T PRK11831         87 SMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIM  166 (269)
T ss_pred             EEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            99999999999999999998864432 23333445568889999999998999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         156 LDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       156 lDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |||||+|||+.+++.++++|+++. + |.|||++|||++++..+||++++|++|+++..|+++++.
T Consensus       167 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  232 (269)
T PRK11831        167 FDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ  232 (269)
T ss_pred             EcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence            999999999999999999999984 4 899999999999999999999999999999999887654

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.6e-56  Score=409.78  Aligned_cols=219  Identities=26%  Similarity=0.410  Sum_probs=196.7

Q ss_pred             CEEEeEEEEeCCCc-----------------------ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeE
Q psy7367           1 MAIQNLSKRFPNGK-----------------------LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT   57 (251)
Q Consensus         1 l~i~~l~~~y~~~~-----------------------~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~   57 (251)
                      |+++||+|.|+...                       .+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+
T Consensus         5 i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~   84 (400)
T PRK10070          5 LEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQ   84 (400)
T ss_pred             EEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCE
Confidence            57899999996422                       1899999999999999999999999999999999999999999


Q ss_pred             EEEcceeCCC-ChHH----hhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCc
Q psy7367          58 AKIYNHDIRT-DMTT----IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANT  132 (251)
Q Consensus        58 i~~~g~~~~~-~~~~----~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  132 (251)
                      |+++|+++.. ....    .+++++|+||++.+|+++||+||+.+.....+....+..+++.++++.++|.+..++++.+
T Consensus        85 I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~  164 (400)
T PRK10070         85 VLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDE  164 (400)
T ss_pred             EEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCccc
Confidence            9999999854 2221    2458999999999999999999999987665555555566788999999999999999999


Q ss_pred             CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEE
Q psy7367         133 LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQ  210 (251)
Q Consensus       133 LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~  210 (251)
                      |||||||||+|||||+.+|++|||||||++||+.+++.+.++|.+++  .|+|||++|||++++.++||++++|++|+++
T Consensus       165 LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~  244 (400)
T PRK10070        165 LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV  244 (400)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence            99999999999999999999999999999999999999999999984  3899999999999999999999999999999


Q ss_pred             eecCHHHHH
Q psy7367         211 CCGSSVFLK  219 (251)
Q Consensus       211 ~~g~~~~~~  219 (251)
                      ..|+++++.
T Consensus       245 ~~g~~~~l~  253 (400)
T PRK10070        245 QVGTPDEIL  253 (400)
T ss_pred             ecCCHHHHH
Confidence            999887653

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.4e-56  Score=392.53  Aligned_cols=219  Identities=27%  Similarity=0.451  Sum_probs=195.5

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC---ChHHhhcceE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT---DMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~~~i~   77 (251)
                      |+++|++++|++++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..   ....+++.++
T Consensus         6 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig   85 (283)
T PRK13636          6 LKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVG   85 (283)
T ss_pred             EEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEE
Confidence            5789999999534679999999999999999999999999999999999999999999999999842   2345678899


Q ss_pred             EEccCCC-CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367          78 VCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL  156 (251)
Q Consensus        78 ~v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll  156 (251)
                      |+||++. .+...|++||+.+.....+.+..+..+++.++++.++|.+..++++.+||||||||++|||||+.+|++|||
T Consensus        86 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLil  165 (283)
T PRK13636         86 MVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVL  165 (283)
T ss_pred             EEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            9999973 234579999998865544555555566789999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         157 DEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       157 DEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      ||||+|||+.++..++++|+++. + |.|||++|||++++..+|||+++|++|++++.|+++++.
T Consensus       166 DEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~  230 (283)
T PRK13636        166 DEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF  230 (283)
T ss_pred             eCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            99999999999999999999985 4 899999999999999999999999999999999987653

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.8e-56  Score=392.89  Aligned_cols=217  Identities=26%  Similarity=0.457  Sum_probs=194.0

Q ss_pred             CEEEeEEEEeCCC----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-----ChHH
Q psy7367           1 MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-----DMTT   71 (251)
Q Consensus         1 l~i~~l~~~y~~~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-----~~~~   71 (251)
                      ++++||+++|+++    +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..     ....
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (286)
T PRK13646          3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP   82 (286)
T ss_pred             EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence            5789999999532    369999999999999999999999999999999999999999999999999843     1235


Q ss_pred             hhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          72 IRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        72 ~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      ++++|||+||++  .+++ .||.||+.+.....+....+..+++.++++.+||. +..++++.+||||||||++|||||+
T Consensus        83 ~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~  161 (286)
T PRK13646         83 VRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA  161 (286)
T ss_pred             HHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence            678999999987  4565 59999999876554555556667889999999997 6788999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      .+|++|||||||+|||+.++..+.++|++++  .|.|||++|||++++..+|||+++|++|++++.|++.++
T Consensus       162 ~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~  233 (286)
T PRK13646        162 MNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL  233 (286)
T ss_pred             hCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999999999999984  389999999999999999999999999999999998764

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=4.4e-56  Score=390.84  Aligned_cols=216  Identities=27%  Similarity=0.412  Sum_probs=189.7

Q ss_pred             EeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-hHH----hhcceEE
Q psy7367           4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MTT----IRRSLGV   78 (251)
Q Consensus         4 ~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~~----~~~~i~~   78 (251)
                      +|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ...    .+++++|
T Consensus        28 ~~~~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~  106 (269)
T cd03294          28 EEILKKTG-QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISM  106 (269)
T ss_pred             hhhhhhcC-CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEE
Confidence            35555554 35689999999999999999999999999999999999999999999999987531 111    2357999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE  158 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE  158 (251)
                      +||++.+++.+|+.||+.+.....+.......+++.++++.++|.+..++++.+||||||||++|||||+.+|++|||||
T Consensus       107 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDE  186 (269)
T cd03294         107 VFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDE  186 (269)
T ss_pred             EecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            99999999899999999987655444444445678899999999988999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         159 PTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       159 Pt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      ||+|||+.+++.+.++|+++. + |.|||++|||++++.++||++++|++|+++..|+++++.+
T Consensus       187 Pt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  250 (269)
T cd03294         187 AFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT  250 (269)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence            999999999999999999984 4 8999999999999999999999999999999998876643

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-55  Score=389.94  Aligned_cols=219  Identities=25%  Similarity=0.391  Sum_probs=195.3

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      ++++|++++|++++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ....+++.++|+
T Consensus         4 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v   83 (277)
T PRK13652          4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLV   83 (277)
T ss_pred             EEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEE
Confidence            4789999999534569999999999999999999999999999999999999999999999998854 334567789999


Q ss_pred             ccCCC-CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367          80 PQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE  158 (251)
Q Consensus        80 ~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE  158 (251)
                      ||++. .+.+.||.||+.+.....+.......+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||
T Consensus        84 ~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDE  163 (277)
T PRK13652         84 FQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDE  163 (277)
T ss_pred             ecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            99974 33457999999876554445555556678999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         159 PTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       159 Pt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      ||+|||+.++..++++|++++ + |.|||++||+++++.++|||+++|++|+++..|+++++.
T Consensus       164 Pt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~  226 (277)
T PRK13652        164 PTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIF  226 (277)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence            999999999999999999985 4 899999999999999999999999999999999987663

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.9e-56  Score=390.25  Aligned_cols=217  Identities=27%  Similarity=0.395  Sum_probs=194.2

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC--hHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD--MTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~~~i~~   78 (251)
                      ++++|++++|++++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...  ...+++.++|
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~   81 (274)
T PRK13644          2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGI   81 (274)
T ss_pred             EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEE
Confidence            57999999995346799999999999999999999999999999999999999999999999988532  2455678999


Q ss_pred             EccCCC-CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367          79 CPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD  157 (251)
Q Consensus        79 v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD  157 (251)
                      +||++. .+..+|+.||+.+.....+....+..+++.++++.+++.+..++++.+||+|||||++|||||+.+|+++|||
T Consensus        82 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD  161 (274)
T PRK13644         82 VFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFD  161 (274)
T ss_pred             EEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            999985 3556899999988765544555555667889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         158 EPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       158 EPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      |||+|||+.++..++++|++++ +|.|||++|||++++. .|||+++|++|++++.|+++.+
T Consensus       162 EPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~  222 (274)
T PRK13644        162 EVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENV  222 (274)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999986 5999999999999995 6999999999999999998765

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=1.3e-55  Score=385.21  Aligned_cols=218  Identities=23%  Similarity=0.364  Sum_probs=194.4

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-------------
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-------------   67 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-------------   67 (251)
                      |+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..             
T Consensus         6 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   84 (257)
T PRK10619          6 LNVIDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADK   84 (257)
T ss_pred             EEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccc
Confidence            57999999996 4789999999999999999999999999999999999999999999999988742             


Q ss_pred             -ChHHhhcceEEEccCCCCCCCCCHHHHHHHHH-HhcCCChHHHHHHHHHHHHHcCCCccc-CCCCCcCChhHHHHHHHH
Q psy7367          68 -DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYS-QLKQVPKDLAQLEISNMIVDLGIPHKR-TSLANTLSGGMQRKLSVA  144 (251)
Q Consensus        68 -~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~kqrv~ia  144 (251)
                       ....++++++|+||++.+++.+|++||+.+.. ...........+++.++++.+++.+.. ++++.+||||||||++||
T Consensus        85 ~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~la  164 (257)
T PRK10619         85 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA  164 (257)
T ss_pred             hHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence             12345678999999999999999999998743 233334445566788999999998764 889999999999999999


Q ss_pred             HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         145 MAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       145 ~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |||+.+|++|||||||+|||+.+++.+.++|++++ +|.|||++|||++++..+|||+++|++|++++.|+++.+.
T Consensus       165 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  240 (257)
T PRK10619        165 RALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF  240 (257)
T ss_pred             HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence            99999999999999999999999999999999986 5999999999999999999999999999999999887653

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.4e-56  Score=389.01  Aligned_cols=217  Identities=22%  Similarity=0.370  Sum_probs=193.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC---ChHHhhcceE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT---DMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~~~i~   77 (251)
                      |+++|++++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..   ....+++.++
T Consensus         2 l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~   80 (271)
T PRK13638          2 LATSDLWFRYQD-EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA   80 (271)
T ss_pred             eEEEEEEEEcCC-cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence            579999999964 679999999999999999999999999999999999999999999999998742   2234567899


Q ss_pred             EEccCCCC-CCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367          78 VCPQYNAL-FDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL  156 (251)
Q Consensus        78 ~v~q~~~l-~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll  156 (251)
                      |+||++.+ +...|+.+|+.++....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||
T Consensus        81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllL  160 (271)
T PRK13638         81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLL  160 (271)
T ss_pred             EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            99999753 34468999998865544444445556788999999999888999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         157 DEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       157 DEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      ||||+|||+.++..+.++|++++ +|.|||++|||++++..+||++++|++|++++.|+++.+
T Consensus       161 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  223 (271)
T PRK13638        161 DEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEV  223 (271)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            99999999999999999999985 589999999999999999999999999999999988655

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-55  Score=388.80  Aligned_cols=219  Identities=26%  Similarity=0.436  Sum_probs=193.8

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC---ChHHhhcceE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT---DMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~~~i~   77 (251)
                      ++++|++++|++.+.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..   ....+++.|+
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   81 (275)
T PRK13639          2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG   81 (275)
T ss_pred             EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheE
Confidence            5789999999634579999999999999999999999999999999999999999999999998842   1234567899


Q ss_pred             EEccCCC-CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367          78 VCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL  156 (251)
Q Consensus        78 ~v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll  156 (251)
                      |+||++. .+..+||.||+.+.....+....+..+++.++++.+++.++.++++.+|||||+||++|||||+.+|+++||
T Consensus        82 ~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llll  161 (275)
T PRK13639         82 IVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVL  161 (275)
T ss_pred             EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            9999973 333479999998764433444445556788999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         157 DEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       157 DEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      ||||+|||+.++..++++|++++ +|.|||++|||++++.++||++++|++|++++.|+++.+.
T Consensus       162 DEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  225 (275)
T PRK13639        162 DEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVF  225 (275)
T ss_pred             eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            99999999999999999999985 5899999999999999999999999999999999987653

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=7.7e-56  Score=377.87  Aligned_cols=209  Identities=23%  Similarity=0.431  Sum_probs=184.7

Q ss_pred             CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChH---Hhh
Q psy7367           1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMT---TIR   73 (251)
Q Consensus         1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~---~~~   73 (251)
                      |+++|++++|+++   +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ...   .++
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (221)
T TIGR02211         2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR   81 (221)
T ss_pred             EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence            5789999999532   469999999999999999999999999999999999999999999999998753 211   223


Q ss_pred             -cceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367          74 -RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR  152 (251)
Q Consensus        74 -~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~  152 (251)
                       +.++|+||++.+++.+|++||+.+....+.....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|+
T Consensus        82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~  161 (221)
T TIGR02211        82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPS  161 (221)
T ss_pred             HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCC
Confidence             6799999999999889999999886544433334445678899999999988899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEE
Q psy7367         153 TVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQ  210 (251)
Q Consensus       153 llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~  210 (251)
                      +|||||||+|||+.++..+.++|+++. + +.|||++|||++++.. ||++++|++|+++
T Consensus       162 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~  220 (221)
T TIGR02211       162 LVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF  220 (221)
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence            999999999999999999999999984 3 8999999999999865 8999999999975

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.4e-56  Score=382.98  Aligned_cols=217  Identities=29%  Similarity=0.527  Sum_probs=194.4

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-Ch-HHhhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DM-TTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~-~~~~~~i~~   78 (251)
                      ++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. .. ...++.++|
T Consensus         4 l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   82 (241)
T PRK10895          4 LTAKNLAKAYK-GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY   82 (241)
T ss_pred             EEEeCcEEEeC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence            57899999996 4789999999999999999999999999999999999999999999999998853 22 234578999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD  157 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD  157 (251)
                      +||++.+++.+|+.||+.++.... .....+...++.++++.+++.+..++++.+||||||||++|||||+.+|++||||
T Consensus        83 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  162 (241)
T PRK10895         83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLD  162 (241)
T ss_pred             eccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            999999999899999998765433 2233344567889999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         158 EPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       158 EPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      |||++||+.++..+.+++.+++ +|.|||++||+++++..+||++++|++|++++.|+++++
T Consensus       163 EPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  224 (241)
T PRK10895        163 EPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI  224 (241)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence            9999999999999999999985 589999999999999999999999999999999988765

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-55  Score=381.68  Aligned_cols=217  Identities=21%  Similarity=0.343  Sum_probs=193.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-------ChHHhh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-------DMTTIR   73 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-------~~~~~~   73 (251)
                      ++++|++++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..       .....+
T Consensus         3 l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   81 (242)
T PRK11124          3 IQLNGINCFYGA-HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR   81 (242)
T ss_pred             EEEEeeEEEECC-eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence            478999999964 789999999999999999999999999999999999999999999999998631       123456


Q ss_pred             cceEEEccCCCCCCCCCHHHHHHHH-HHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367          74 RSLGVCPQYNALFDKLTVEEHMWFY-SQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR  152 (251)
Q Consensus        74 ~~i~~v~q~~~l~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~  152 (251)
                      ++++|+||++.+++.+|+.||+.+. ....+....+..+++.++++.+|+.+..++++.+||||||||++|||||+.+|+
T Consensus        82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~  161 (242)
T PRK11124         82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQ  161 (242)
T ss_pred             hheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            7899999999999999999999753 333344444445678899999999988999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         153 TVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       153 llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      ++||||||+|||+.++..++++|++++ +|.|||++|||++++..+||++++|++|+++..|+++.+
T Consensus       162 llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  228 (242)
T PRK11124        162 VLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF  228 (242)
T ss_pred             EEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence            999999999999999999999999986 489999999999999999999999999999999987654

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-55  Score=397.01  Aligned_cols=217  Identities=24%  Similarity=0.405  Sum_probs=193.3

Q ss_pred             CEEEeEEEEeCCC----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC--------
Q psy7367           1 MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD--------   68 (251)
Q Consensus         1 l~i~~l~~~y~~~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~--------   68 (251)
                      |+++|++++|++.    ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...        
T Consensus        22 l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~  101 (320)
T PRK13631         22 LRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELIT  101 (320)
T ss_pred             EEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccc
Confidence            5789999999632    3599999999999999999999999999999999999999999999999887431        


Q ss_pred             ---------hHHhhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChh
Q psy7367          69 ---------MTTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGG  136 (251)
Q Consensus        69 ---------~~~~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG  136 (251)
                               ...+++.|+|+||++  .+|+ .||+||+.++....+.+..+..+++.++++.++|. ...++++.+||||
T Consensus       102 ~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgG  180 (320)
T PRK13631        102 NPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGG  180 (320)
T ss_pred             cccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHH
Confidence                     235678899999997  5665 59999998875444445555666788999999997 6789999999999


Q ss_pred             HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCH
Q psy7367         137 MQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  215 (251)
Q Consensus       137 ~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~  215 (251)
                      ||||++|||||+.+|++|||||||+|||+.++..++++|++++ +|.|||++|||++++.++|||+++|++|++++.|++
T Consensus       181 qkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~~  260 (320)
T PRK13631        181 QKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTP  260 (320)
T ss_pred             HHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence            9999999999999999999999999999999999999999985 589999999999999999999999999999999998


Q ss_pred             HHH
Q psy7367         216 VFL  218 (251)
Q Consensus       216 ~~~  218 (251)
                      +++
T Consensus       261 ~~~  263 (320)
T PRK13631        261 YEI  263 (320)
T ss_pred             HHH
Confidence            754

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-55  Score=385.88  Aligned_cols=217  Identities=25%  Similarity=0.382  Sum_probs=193.0

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      |+++|++++|++ +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|+++|.++.. ....+++.++|+
T Consensus         3 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~   81 (258)
T PRK13548          3 LEARNLSVRLGG-RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL   81 (258)
T ss_pred             EEEEeEEEEeCC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence            578999999964 679999999999999999999999999999999999999999999999998753 233456789999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc------cCCCE
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI------GGSRT  153 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~------~~p~l  153 (251)
                      ||++.+++.+||+||+.+.............+++.++++.+++.+..++++.+||||||||++|||||+      .+|++
T Consensus        82 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~l  161 (258)
T PRK13548         82 PQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRW  161 (258)
T ss_pred             ccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence            999988888999999988643322222334456889999999998889999999999999999999999      59999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         154 VILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       154 lllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      |||||||+|||+.+++.+.++|+++.  +|.|||++|||++++..+||++++|++|+++..|+++++
T Consensus       162 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (258)
T PRK13548        162 LLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV  228 (258)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence            99999999999999999999999985  489999999999999999999999999999999987654

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-55  Score=384.52  Aligned_cols=217  Identities=24%  Similarity=0.388  Sum_probs=192.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCCC---hHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRTD---MTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~~---~~~~   72 (251)
                      |+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++...   ...+
T Consensus        13 l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~   91 (258)
T PRK14268         13 IKVENLNLWYG-EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVEL   91 (258)
T ss_pred             EEEeeeEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHH
Confidence            47899999996 46799999999999999999999999999999999999975     899999999987431   2345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      ++.++|+||++.+++ +|++||+.+.....+.......+++.++++.+++.    +..++++.+|||||||||+|||||+
T Consensus        92 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~  170 (258)
T PRK14268         92 RKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLA  170 (258)
T ss_pred             hhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHH
Confidence            678999999998888 89999999876544444444455688899999983    4568899999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      .+|++|||||||+|||+.++..++++|++++++.|||++|||++++.++|||+++|++|++++.|+++++.
T Consensus       171 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  241 (258)
T PRK14268        171 VKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF  241 (258)
T ss_pred             cCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            99999999999999999999999999999866899999999999999999999999999999999987663

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=9.7e-56  Score=378.53  Aligned_cols=213  Identities=26%  Similarity=0.424  Sum_probs=184.7

Q ss_pred             CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh----HHhh
Q psy7367           1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM----TTIR   73 (251)
Q Consensus         1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~----~~~~   73 (251)
                      ++++|++++|++.   .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....    ..++
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (228)
T cd03257           2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR   81 (228)
T ss_pred             eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence            5789999999642   17999999999999999999999999999999999999999999999999885422    3456


Q ss_pred             cceEEEccCC--CCCCCCCHHHHHHHHHHhcCCC-hHHHHHH-HHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          74 RSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQVP-KDLAQLE-ISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        74 ~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~-~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      +.++|+||++  .+++.+||+||+.+.....+.. .....+. +.++++.+++. ...++++.+||||||||++|||||+
T Consensus        82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~  161 (228)
T cd03257          82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALA  161 (228)
T ss_pred             ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHh
Confidence            7899999998  5677899999998865443322 1222222 35889999995 6788999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  213 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g  213 (251)
                      .+|++|||||||+|||+.+++.+.++|+++. + |.|||++|||++++..+||++++|++|+++..|
T Consensus       162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g  228 (228)
T cd03257         162 LNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG  228 (228)
T ss_pred             cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence            9999999999999999999999999999985 4 899999999999999999999999999998654

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=4.9e-56  Score=373.30  Aligned_cols=219  Identities=26%  Similarity=0.437  Sum_probs=196.7

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC--hHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD--MTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~~~i~~   78 (251)
                      ++++||+..|+. .++|++|||++++||+++|+||||||||||||+|+|+.+|.+|+|.++|+++...  ....|..|+|
T Consensus         4 L~v~~l~~~YG~-~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~   82 (237)
T COG0410           4 LEVENLSAGYGK-IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAY   82 (237)
T ss_pred             eeEEeEeecccc-eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEe
Confidence            589999999975 8899999999999999999999999999999999999999999999999999752  3456789999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHc-CCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL-GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD  157 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD  157 (251)
                      |||...+|+.|||+|||.++...... +......++++.+.| .|.+..+++.++|||||||.++|||||+.+|++|+||
T Consensus        83 VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLD  161 (237)
T COG0410          83 VPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLD  161 (237)
T ss_pred             CcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEec
Confidence            99999999999999999987654332 111122277788888 4788899999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         158 EPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       158 EPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      |||.||-|.-.++|.+.+++++ + |.||+++.++...+.+++||.++|.+|+++.+|+.+++...
T Consensus       162 EPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~  227 (237)
T COG0410         162 EPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD  227 (237)
T ss_pred             CCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence            9999999999999999999996 4 78999999999999999999999999999999998877543

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-55  Score=389.40  Aligned_cols=218  Identities=27%  Similarity=0.429  Sum_probs=195.3

Q ss_pred             CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++|++++|++ .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ....+++.|+|
T Consensus         6 l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~   85 (279)
T PRK13635          6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGM   85 (279)
T ss_pred             EEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEE
Confidence            478999999963 3569999999999999999999999999999999999999999999999999854 23345678999


Q ss_pred             EccCC-CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367          79 CPQYN-ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD  157 (251)
Q Consensus        79 v~q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD  157 (251)
                      +||++ .+++.+||.||+.++....+....+..+++.++++.++|.+..++++.+||||||||++|||||+.+|++||||
T Consensus        86 ~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD  165 (279)
T PRK13635         86 VFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILD  165 (279)
T ss_pred             EEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            99998 36667899999988765555555555677899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         158 EPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       158 EPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |||+|||+.++..++++|+++. + |.|||++|||++++.. ||++++|++|++++.|+++.+.
T Consensus       166 EPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~  228 (279)
T PRK13635        166 EATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIF  228 (279)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHh
Confidence            9999999999999999999985 4 8999999999999975 9999999999999999887553

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-55  Score=381.79  Aligned_cols=218  Identities=24%  Similarity=0.386  Sum_probs=193.5

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCC-ChHHhhc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRT-DMTTIRR   74 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~-~~~~~~~   74 (251)
                      ++++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++.. ....+++
T Consensus         4 l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~   82 (250)
T PRK14247          4 IEIRDLKVSFGQ-VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRR   82 (250)
T ss_pred             EEEEeeEEEECC-eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhc
Confidence            578999999964 6799999999999999999999999999999999999974     79999999998853 3345677


Q ss_pred             ceEEEccCCCCCCCCCHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHcCCCc----ccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          75 SLGVCPQYNALFDKLTVEEHMWFYSQLKQV--PKDLAQLEISNMIVDLGIPH----KRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        75 ~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      .|+|+||++.+++.+||.||+.+.......  ...+..+++.++++.+++.+    ..++++.+||||||||++|||||+
T Consensus        83 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~  162 (250)
T PRK14247         83 RVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALA  162 (250)
T ss_pred             cEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence            899999999888889999999886543322  23444567889999999853    568899999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      .+|+++||||||+|||+.++..+.++|++++++.|||++||+++++..+||++++|++|++++.|+++++.
T Consensus       163 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (250)
T PRK14247        163 FQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF  233 (250)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence            99999999999999999999999999999876899999999999999999999999999999999987653

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.6e-55  Score=384.56  Aligned_cols=210  Identities=24%  Similarity=0.410  Sum_probs=189.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...    +..++|+|
T Consensus         2 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----~~~~~~v~   76 (255)
T PRK11248          2 LQISHLYADYGG-KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP----GAERGVVF   76 (255)
T ss_pred             EEEEEEEEEeCC-eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC----CCcEEEEe
Confidence            579999999964 6799999999999999999999999999999999999999999999999987531    24589999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++.+||.||+.+.....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||
T Consensus        77 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt  156 (255)
T PRK11248         77 QNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPF  156 (255)
T ss_pred             CCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            99999988999999988655444444445567899999999998889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhh-h-CCCeEEEEeCCHHHHHhhcCEEEEee--CCEEEeecCH
Q psy7367         161 SGVDPYSRRSIWELLIKY-K-KGRTVILTTHYMDEADLLGDRIAIIA--AGKLQCCGSS  215 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l-~-~g~tiii~tHd~~~~~~~~d~i~~l~--~G~i~~~g~~  215 (251)
                      +|||+.++..++++|+++ + .|+|||++|||++++..+||++++|+  +|+++..++.
T Consensus       157 ~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~  215 (255)
T PRK11248        157 GALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL  215 (255)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence            999999999999999997 4 48999999999999999999999998  5999987754

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.5e-55  Score=382.25  Aligned_cols=218  Identities=24%  Similarity=0.411  Sum_probs=192.7

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~---~~~~~   72 (251)
                      |+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|+++|+++..   ....+
T Consensus         5 l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~   83 (253)
T PRK14267          5 IETVNLRVYYGS-NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEV   83 (253)
T ss_pred             EEEEeEEEEeCC-eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHH
Confidence            578999999964 6799999999999999999999999999999999999987     49999999998851   23345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHH
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV--PKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMA  146 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~a  146 (251)
                      +++++|+||++.+++.+|+.||+.+.....+.  ......+++.++++.+++.    ...++++.+||||||||++||||
T Consensus        84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara  163 (253)
T PRK14267         84 RREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARA  163 (253)
T ss_pred             hhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHH
Confidence            67899999999999999999999886544332  2334445688899999984    35688999999999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |+.+|+++||||||+|||+.+++.+.++|+++.++.|||++||+++++..+||++++|++|++++.|+++++.
T Consensus       164 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  236 (253)
T PRK14267        164 LAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVF  236 (253)
T ss_pred             HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence            9999999999999999999999999999999866799999999999999999999999999999999987653

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=1.3e-55  Score=374.06  Aligned_cols=209  Identities=22%  Similarity=0.402  Sum_probs=184.2

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|++++|++ +.  .++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ..++.++|+|
T Consensus         1 i~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~-~~~~~i~~~~   76 (211)
T cd03298           1 VRLDKIRFSYGE-QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAP-PADRPVSMLF   76 (211)
T ss_pred             CEEEeEEEEeCC-Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCC-HhHccEEEEe
Confidence            579999999963 43  3999999999999999999999999999999999999999999999885422 2357899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++.+|++||+.+............++++.++++.+++.+..++++.+||+|||||++|||||+.+|+++||||||
T Consensus        77 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~  156 (211)
T cd03298          77 QENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPF  156 (211)
T ss_pred             cccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            99999999999999987543211112234457889999999998889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367         161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  213 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g  213 (251)
                      +|||+.++..++++|++++ + +.|||++||+++++..+|||+++|++|+++..|
T Consensus       157 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~  211 (211)
T cd03298         157 AALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG  211 (211)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence            9999999999999999984 3 899999999999999999999999999997653

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.4e-55  Score=401.92  Aligned_cols=205  Identities=28%  Similarity=0.476  Sum_probs=186.5

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcce----eCCC-Ch---HHhh-cceEEEccCCCC
Q psy7367          15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH----DIRT-DM---TTIR-RSLGVCPQYNAL   85 (251)
Q Consensus        15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~----~~~~-~~---~~~~-~~i~~v~q~~~l   85 (251)
                      .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+    ++.. ..   ...| ++|+|+||++.+
T Consensus        38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l  117 (382)
T TIGR03415        38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL  117 (382)
T ss_pred             EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence            5899999999999999999999999999999999999999999999997    3422 11   1223 589999999999


Q ss_pred             CCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q psy7367          86 FDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDP  165 (251)
Q Consensus        86 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~  165 (251)
                      |+++||.||+.++....+.++.+..+++.++++.+||.+..++++.+|||||||||+|||||+.+|++|||||||++||+
T Consensus       118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~  197 (382)
T TIGR03415       118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDP  197 (382)
T ss_pred             CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH
Confidence            99999999999987666666666667889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         166 YSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       166 ~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      .++..+.+.|.+++ + ++|||++|||++++.++|||+++|++|+++..|+++++.
T Consensus       198 ~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~  253 (382)
T TIGR03415       198 LIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIV  253 (382)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence            99999999999985 3 899999999999999999999999999999999987663

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3e-55  Score=387.43  Aligned_cols=217  Identities=29%  Similarity=0.468  Sum_probs=191.9

Q ss_pred             CEEEeEEEEeCCC----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-----ChHH
Q psy7367           1 MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-----DMTT   71 (251)
Q Consensus         1 l~i~~l~~~y~~~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-----~~~~   71 (251)
                      |+++|++++|++.    +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..     ....
T Consensus         3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (280)
T PRK13649          3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ   82 (280)
T ss_pred             EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence            5789999999632    369999999999999999999999999999999999999999999999998753     1234


Q ss_pred             hhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          72 IRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        72 ~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      +++.|+|+||++  .+++ .|++||+.+.....+...++..+++.++++.+++. ...++++.+||||||||++|||||+
T Consensus        83 ~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~  161 (280)
T PRK13649         83 IRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA  161 (280)
T ss_pred             HHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence            567899999997  4555 69999998865544444445556788999999997 4678999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      .+|++|||||||++||+.+++.++++|++++ +|.|||++||+++++..+||++++|++|+++..|+++.+
T Consensus       162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  232 (280)
T PRK13649        162 MEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI  232 (280)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999985 489999999999999999999999999999999988765

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3e-55  Score=395.30  Aligned_cols=220  Identities=17%  Similarity=0.298  Sum_probs=195.7

Q ss_pred             CEEEeEEEEeCC---------CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC---
Q psy7367           1 MAIQNLSKRFPN---------GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD---   68 (251)
Q Consensus         1 l~i~~l~~~y~~---------~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~---   68 (251)
                      |+++||++.|+.         ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...   
T Consensus         6 l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~   85 (327)
T PRK11308          6 LQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPE   85 (327)
T ss_pred             EEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHH
Confidence            579999999952         24699999999999999999999999999999999999999999999999998542   


Q ss_pred             -hHHhhcceEEEccCC--CCCCCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHH
Q psy7367          69 -MTTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSV  143 (251)
Q Consensus        69 -~~~~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~i  143 (251)
                       ...++++|+|+||++  .+++.+|+.+++....... +....+..+++.++++.+||. ...++++++|||||||||+|
T Consensus        86 ~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~i  165 (327)
T PRK11308         86 AQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAI  165 (327)
T ss_pred             HHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHH
Confidence             124567899999998  5888899999998765543 344555667899999999997 46799999999999999999


Q ss_pred             HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         144 AMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       144 a~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      ||||+.+|++||+||||++||+.++..++++|++++ + |.|||+||||++.+.++|||+++|++|++++.|+.+++..
T Consensus       166 ArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~  244 (327)
T PRK11308        166 ARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFN  244 (327)
T ss_pred             HHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence            999999999999999999999999999999999984 3 8999999999999999999999999999999999876643

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.8e-55  Score=381.01  Aligned_cols=218  Identities=22%  Similarity=0.368  Sum_probs=194.8

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC------------
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD------------   68 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~------------   68 (251)
                      |+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...            
T Consensus         1 i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~   79 (252)
T TIGR03005         1 VRFSDVTKRFGI-LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE   79 (252)
T ss_pred             CEEEEEEEEeCC-eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence            689999999964 6899999999999999999999999999999999999999999999999987421            


Q ss_pred             --hHHhhcceEEEccCCCCCCCCCHHHHHHHHHH-hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHH
Q psy7367          69 --MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ-LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAM  145 (251)
Q Consensus        69 --~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~  145 (251)
                        ...+++.++|+||++.+++.+|+.||+.+... ..+.......+++.++++.+++.+..++.+.+|||||+||++|||
T Consensus        80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar  159 (252)
T TIGR03005        80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIAR  159 (252)
T ss_pred             hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHH
Confidence              12456789999999999999999999987532 223334445567889999999998889999999999999999999


Q ss_pred             HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         146 AFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       146 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      ||+.+|++|||||||+|||+.++..++++|+++. + |.|||++||+++++..+|||+++|++|++++.|+++.+.
T Consensus       160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  235 (252)
T TIGR03005       160 ALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIF  235 (252)
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence            9999999999999999999999999999999984 4 899999999999999999999999999999999887653

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=100.00  E-value=1.3e-55  Score=378.73  Aligned_cols=214  Identities=27%  Similarity=0.454  Sum_probs=189.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChH-HhhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMT-TIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~-~~~~~i~~   78 (251)
                      |+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ... ..+++++|
T Consensus         1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (230)
T TIGR03410         1 LEVSNLNVYYGQ-SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY   79 (230)
T ss_pred             CEEEeEEEEeCC-eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence            689999999964 689999999999999999999999999999999999999999999999998753 222 23568999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC-CCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG-IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD  157 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD  157 (251)
                      +||++.+|+.+|+.||+.++...++..   ..+.+.++++.++ +.+..++++.+||||||||++|||||+.+|+++|||
T Consensus        80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlD  156 (230)
T TIGR03410        80 VPQGREIFPRLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLD  156 (230)
T ss_pred             eccCCcccCCCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence            999999999999999998865543322   1234567788887 577789999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         158 EPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       158 EPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      |||+|||+.++..+.++|.+++ + +.|||++||+++++..+||++++|++|++++.|+++.+
T Consensus       157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~  219 (230)
T TIGR03410       157 EPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL  219 (230)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence            9999999999999999999985 3 89999999999999999999999999999999988765

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=3.1e-55  Score=375.95  Aligned_cols=210  Identities=25%  Similarity=0.381  Sum_probs=185.9

Q ss_pred             CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-hH---Hh-
Q psy7367           1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MT---TI-   72 (251)
Q Consensus         1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~---~~-   72 (251)
                      |+++|++++|+++   ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..   .. 
T Consensus         7 l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~   86 (228)
T PRK10584          7 VEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLR   86 (228)
T ss_pred             EEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHH
Confidence            5789999999642   2599999999999999999999999999999999999999999999999987532 21   12 


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR  152 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~  152 (251)
                      +++++|+||++.+++.+|+.||+.+.....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|+
T Consensus        87 ~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~  166 (228)
T PRK10584         87 AKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPD  166 (228)
T ss_pred             hheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            35799999999999999999999886544444444556678999999999988899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEe
Q psy7367         153 TVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQC  211 (251)
Q Consensus       153 llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~  211 (251)
                      +|||||||+|||+.+++.++++|++++ + |.|||++|||++++.. ||++++|++|++++
T Consensus       167 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~~  226 (228)
T PRK10584        167 VLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQE  226 (228)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEEEe
Confidence            999999999999999999999999984 4 8999999999999865 99999999999875

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.1e-55  Score=380.30  Aligned_cols=217  Identities=26%  Similarity=0.362  Sum_probs=190.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~~   72 (251)
                      |+++|++++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+.+     |++|+|.++|+++..   ....+
T Consensus         7 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~   85 (253)
T PRK14242          7 MEARGLSFFYGD-FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVEL   85 (253)
T ss_pred             EEEeeeEEEECC-eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHH
Confidence            578999999964 679999999999999999999999999999999999964     689999999998753   22345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCCc----ccCCCCCcCChhHHHHHHHHHHH
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGIPH----KRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      ++.++|+||++.+|+ .||+||+.+.....+. ......+++.++++.+++.+    ..++++.+|||||||||+|||||
T Consensus        86 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral  164 (253)
T PRK14242         86 RRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARAL  164 (253)
T ss_pred             hhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence            678999999998887 5999999887554433 23334567888999999853    46788999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +.+|++|||||||+|||+.++..+.++|++++++.|||++|||++++.++||++++|++|+++..|+++.+.
T Consensus       165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  236 (253)
T PRK14242        165 AVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF  236 (253)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999876899999999999999999999999999999999887653

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=7.5e-56  Score=376.14  Aligned_cols=205  Identities=21%  Similarity=0.407  Sum_probs=180.3

Q ss_pred             EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEcc
Q psy7367           2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQ   81 (251)
Q Consensus         2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q   81 (251)
                      +++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.    ..++.++|+||
T Consensus         1 ~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~----~~~~~i~~v~q   75 (213)
T cd03235           1 EVEDLTVSYGG-HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE----KERKRIGYVPQ   75 (213)
T ss_pred             CcccceeEECC-EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH----HHHhheEEecc
Confidence            47899999964 67999999999999999999999999999999999999999999999998763    35678999999


Q ss_pred             CCCCC--CCCCHHHHHHHHHHhcC----CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367          82 YNALF--DKLTVEEHMWFYSQLKQ----VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI  155 (251)
Q Consensus        82 ~~~l~--~~ltv~e~l~~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll  155 (251)
                      ++.++  +.+||+||+.+......    .......+++.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus        76 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll  155 (213)
T cd03235          76 RRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLL  155 (213)
T ss_pred             ccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            98763  34799999987543211    1223345678899999999988899999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEee
Q psy7367         156 LDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  212 (251)
Q Consensus       156 lDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~  212 (251)
                      |||||+|||+.+++.+.++|++++ +|.|||++|||++++.++||++++|++| +++.
T Consensus       156 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~  212 (213)
T cd03235         156 LDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS  212 (213)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence            999999999999999999999985 6899999999999999999999999886 5444

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.6e-55  Score=380.93  Aligned_cols=217  Identities=26%  Similarity=0.396  Sum_probs=191.5

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~---~~~~~   72 (251)
                      ++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|     ++|+|+++|+++..   ....+
T Consensus         8 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~   86 (254)
T PRK14273          8 IETENLNLFYTD-FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILEL   86 (254)
T ss_pred             EEEeeeEEEeCC-ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHH
Confidence            578999999964 6799999999999999999999999999999999999987     48999999998742   22345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCC----CcccCCCCCcCChhHHHHHHHHHHH
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGI----PHKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      ++.|+|+||++.+++ +||+||+.+.....+. ......+++.++++.+++    .+..++++.+||||||||++|||||
T Consensus        87 ~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral  165 (254)
T PRK14273         87 RRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTL  165 (254)
T ss_pred             hhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHH
Confidence            778999999998885 8999999887544332 233445678889999987    4557889999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +.+|++|||||||+|||+.++..++++|++++++.|||++||+++++..+|||+++|++|+++..|++.++.
T Consensus       166 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  237 (254)
T PRK14273        166 AIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF  237 (254)
T ss_pred             HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999976899999999999999999999999999999999987664

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.5e-55  Score=381.56  Aligned_cols=217  Identities=27%  Similarity=0.397  Sum_probs=191.3

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHH-hhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTT-IRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~-~~~~i~~   78 (251)
                      ++++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .... .+..++|
T Consensus         6 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   84 (255)
T PRK11300          6 LSVSGLMMRFG-GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVR   84 (255)
T ss_pred             EEEeeEEEEEC-CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEE
Confidence            57899999996 4789999999999999999999999999999999999999999999999998854 2222 3456999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHh----------cCC-----ChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQL----------KQV-----PKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSV  143 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~----------~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~i  143 (251)
                      +||++.+++.+||.||+.++...          ...     ...+..+.+.++++.+++.+..++++.+||||||||++|
T Consensus        85 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l  164 (255)
T PRK11300         85 TFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEI  164 (255)
T ss_pred             eccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHH
Confidence            99999999999999999885321          000     111233567889999999999999999999999999999


Q ss_pred             HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         144 AMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       144 a~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      |+||+.+|++|||||||+|||+.+++.++++|.+++ + |.|||++||+++++..+||++++|++|+++..|+++.+
T Consensus       165 a~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  241 (255)
T PRK11300        165 ARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI  241 (255)
T ss_pred             HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHH
Confidence            999999999999999999999999999999999984 4 89999999999999999999999999999999987755

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.4e-55  Score=378.88  Aligned_cols=216  Identities=25%  Similarity=0.393  Sum_probs=191.2

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-hH-HhhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MT-TIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~-~~~~~i~~   78 (251)
                      ++++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .. ..++.++|
T Consensus         6 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~   84 (237)
T PRK11614          6 LSFDKVSAHYG-KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAI   84 (237)
T ss_pred             EEEEeEEEeeC-CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEE
Confidence            47899999996 47899999999999999999999999999999999999999999999999987542 22 34678999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHc-CCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL-GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD  157 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD  157 (251)
                      +||++.+|+.+||.||+.+.....  ......+++.++++.+ ++.+..++++.+||||||||++|||||+.+|+++|||
T Consensus        85 ~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlD  162 (237)
T PRK11614         85 VPEGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLD  162 (237)
T ss_pred             eccCcccCCCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEc
Confidence            999999999899999998854322  1223344577788888 5877778899999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         158 EPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       158 EPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |||+|||+.+++.+.++|++++ +|.|||++|||++++.++|||+++|++|+++..|+++.+.
T Consensus       163 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  225 (237)
T PRK11614        163 EPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALL  225 (237)
T ss_pred             CccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence            9999999999999999999985 5899999999999999999999999999999999987664

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=4.3e-56  Score=360.97  Aligned_cols=215  Identities=22%  Similarity=0.354  Sum_probs=192.8

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      +.+++|.++|+. .  --.++++|+.||+++|+|||||||||||++|+|++.|.+|+|+++|++.....+ ..|-++++|
T Consensus         2 l~L~~V~~~y~~-~--~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P-~~RPVSmlF   77 (231)
T COG3840           2 LALDDVRFSYGH-L--PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP-AERPVSMLF   77 (231)
T ss_pred             ccccceEEeeCc-c--eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc-ccCChhhhh
Confidence            467899999953 2  346799999999999999999999999999999999999999999999864322 456799999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |+++||.++||.+|+.++..-.-.-..+.+++++.++.++||..+.++.|.+|||||||||+|||+|+++-+||+||||+
T Consensus        78 QEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPF  157 (231)
T COG3840          78 QENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPF  157 (231)
T ss_pred             hccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCch
Confidence            99999999999999998764221224556778999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         161 SGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |+|||.-|.+.+.++.++.  ++.|++||||.++++.+++|+++++++|+|.+.|+..++.
T Consensus       158 sALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~  218 (231)
T COG3840         158 SALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL  218 (231)
T ss_pred             hhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence            9999999999999999985  4899999999999999999999999999999999876553

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.9e-55  Score=393.87  Aligned_cols=220  Identities=21%  Similarity=0.335  Sum_probs=192.6

Q ss_pred             CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC----CCeeEEEEcceeCCC-ChHH-
Q psy7367           1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP----VSSGTAKIYNHDIRT-DMTT-   71 (251)
Q Consensus         1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~----p~~G~i~~~g~~~~~-~~~~-   71 (251)
                      |+++||++.|+..   ..+|+||||+|++||++||+|+||||||||+++|+|+++    |++|+|.++|+++.. .... 
T Consensus         4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~   83 (326)
T PRK11022          4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER   83 (326)
T ss_pred             EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence            5799999999642   369999999999999999999999999999999999997    489999999999853 2222 


Q ss_pred             --h-hcceEEEccCC--CCCCCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHHHcCCCc---ccCCCCCcCChhHHHHHH
Q psy7367          72 --I-RRSLGVCPQYN--ALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIVDLGIPH---KRTSLANTLSGGMQRKLS  142 (251)
Q Consensus        72 --~-~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgG~kqrv~  142 (251)
                        . ++.|+|+||++  .+++.+|+.+++....... +....+.++++.++++.++|.+   ..++++++|||||||||+
T Consensus        84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~  163 (326)
T PRK11022         84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVM  163 (326)
T ss_pred             HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHH
Confidence              2 24799999998  5788899999987765543 3445556678999999999964   568899999999999999


Q ss_pred             HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         143 VAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       143 ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      |||||+.+|++||+||||++||+.++..++++|++++  .|.|+|++|||++.+.++||||++|++|++++.|+++++..
T Consensus       164 iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~~  243 (326)
T PRK11022        164 IAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFR  243 (326)
T ss_pred             HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhh
Confidence            9999999999999999999999999999999999985  38999999999999999999999999999999999876643

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.4e-55  Score=382.06  Aligned_cols=217  Identities=24%  Similarity=0.356  Sum_probs=192.7

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      ++++|++++|++ +.+|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+++.++|+
T Consensus         3 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   81 (255)
T PRK11231          3 LRTENLTVGYGT-KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL   81 (255)
T ss_pred             EEEEeEEEEECC-EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence            578999999964 789999999999999999999999999999999999999999999999998743 233456789999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHH----hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQ----LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI  155 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll  155 (251)
                      ||++.+++.+|++||+.++..    ..+.......+++.++++.+++.+..++++.+|||||+||++|||||+.+|++||
T Consensus        82 ~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll  161 (255)
T PRK11231         82 PQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVL  161 (255)
T ss_pred             cccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            999998888999999987521    1121123344568899999999988999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         156 LDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       156 lDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      |||||+|||+.+++.+.++|++++ +|.|||++||+++++.++||++++|++|+++..|+++++
T Consensus       162 lDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  225 (255)
T PRK11231        162 LDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEV  225 (255)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence            999999999999999999999985 589999999999999999999999999999999887654

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=100.00  E-value=5.2e-55  Score=381.13  Aligned_cols=217  Identities=22%  Similarity=0.311  Sum_probs=193.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      |+++|+++.|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. .....++.++|+
T Consensus         2 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   80 (256)
T TIGR03873         2 LRLSRVSWSAGG-RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV   80 (256)
T ss_pred             ceEEeEEEEECC-EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence            579999999964 789999999999999999999999999999999999999999999999998754 333456689999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHH-h---cCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQ-L---KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI  155 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~-~---~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll  155 (251)
                      ||++.+++.+||.||+.++.. .   ......+..+++.++++.+++.+..++++.+||+|||||++|||||+.+|+++|
T Consensus        81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll  160 (256)
T TIGR03873        81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLL  160 (256)
T ss_pred             cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            999988888999999987532 1   111222334578899999999988999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         156 LDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       156 lDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      |||||+|||+.++..+.++|++++ +|.|||++||+++++..+||++++|++|++++.|+++++
T Consensus       161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  224 (256)
T TIGR03873       161 LDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREV  224 (256)
T ss_pred             EcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence            999999999999999999999986 489999999999999999999999999999999988654

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=7.2e-55  Score=382.22  Aligned_cols=220  Identities=20%  Similarity=0.331  Sum_probs=192.9

Q ss_pred             CEEEeEEEEeCC--------CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-h--
Q psy7367           1 MAIQNLSKRFPN--------GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-M--   69 (251)
Q Consensus         1 l~i~~l~~~y~~--------~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~--   69 (251)
                      |+++||+++|++        ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... .  
T Consensus         3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~   82 (265)
T TIGR02769         3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ   82 (265)
T ss_pred             EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence            578999999952        35799999999999999999999999999999999999999999999999988532 1  


Q ss_pred             -HHhhcceEEEccCC--CCCCCCCHHHHHHHHHHh-cCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHH
Q psy7367          70 -TTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQL-KQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVA  144 (251)
Q Consensus        70 -~~~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia  144 (251)
                       ..+++.|+|+||++  .+++.+||+||+.+.... .........+++.++++.+++. ...++++.+||||||||++||
T Consensus        83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~la  162 (265)
T TIGR02769        83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIA  162 (265)
T ss_pred             HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHH
Confidence             12467899999997  466789999999876542 2333334456788999999996 678899999999999999999


Q ss_pred             HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         145 MAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       145 ~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      |||+.+|++|||||||++||+.++..++++|+++. + |.|||++|||++++..+||++++|++|+++..|+++++..
T Consensus       163 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  240 (265)
T TIGR02769       163 RALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS  240 (265)
T ss_pred             HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence            99999999999999999999999999999999984 3 8999999999999999999999999999999999876643

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6e-55  Score=383.99  Aligned_cols=217  Identities=29%  Similarity=0.466  Sum_probs=193.3

Q ss_pred             CEEEeEEEEeC-CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFP-NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~-~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++|++++|+ +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ....+++.++|
T Consensus         8 l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~   87 (271)
T PRK13632          8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGI   87 (271)
T ss_pred             EEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEE
Confidence            47899999995 24679999999999999999999999999999999999999999999999999853 33456788999


Q ss_pred             EccCCC-CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367          79 CPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD  157 (251)
Q Consensus        79 v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD  157 (251)
                      +||++. .++.+|++||+.+.....+....+...++.++++.+++.+..++++.+||||||||++|||||+.+|++||||
T Consensus        88 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD  167 (271)
T PRK13632         88 IFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFD  167 (271)
T ss_pred             EEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            999984 5667899999988655444444445567889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         158 EPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       158 EPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      |||+|||+.+++.++++|++++ + +.|||++||+++++. .||++++|++|+++..|+++.+
T Consensus       168 EP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~  229 (271)
T PRK13632        168 ESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEI  229 (271)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHH
Confidence            9999999999999999999985 4 599999999999996 7999999999999999987654

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.7e-55  Score=383.39  Aligned_cols=217  Identities=26%  Similarity=0.376  Sum_probs=192.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      |+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+++.++|+
T Consensus        12 l~i~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v   90 (265)
T PRK10575         12 FALRNVSFRVP-GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYL   90 (265)
T ss_pred             EEEeeEEEEEC-CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEe
Confidence            57899999996 4689999999999999999999999999999999999999999999999998743 334556789999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHh-c---CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQL-K---QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI  155 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~-~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll  155 (251)
                      ||++.+++.+|+.||+.+.... .   +.......+++.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus        91 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll  170 (265)
T PRK10575         91 PQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLL  170 (265)
T ss_pred             ccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            9999888889999999875321 1   11122334568899999999988899999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         156 LDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       156 lDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      |||||+|||+.+++.++++|.++. + |.|||++||+++++.++||++++|++|+++..|+++++
T Consensus       171 LDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~  235 (265)
T PRK10575        171 LDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL  235 (265)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHh
Confidence            999999999999999999999984 4 89999999999999999999999999999999987655

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-54  Score=380.03  Aligned_cols=217  Identities=25%  Similarity=0.380  Sum_probs=192.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~~   72 (251)
                      ++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++..   ....+
T Consensus        14 l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~   92 (260)
T PRK10744         14 IQVRNLNFYYGK-FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALL   92 (260)
T ss_pred             EEEEEEEEEeCC-eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHH
Confidence            478999999964 679999999999999999999999999999999999986     589999999998742   23355


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      +++++|+||++.+++ +|++||+.+..... +.+..+..+++.++++.+++.    +..++++.+||||||||++|||||
T Consensus        93 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral  171 (260)
T PRK10744         93 RAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGI  171 (260)
T ss_pred             hcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence            778999999998887 79999998865433 334444556788999999974    456889999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +.+|++|||||||+|||+.+++.++++|++++++.|||++||+++++..+||++++|++|+++..|+++++.
T Consensus       172 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  243 (260)
T PRK10744        172 AIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF  243 (260)
T ss_pred             HCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999876889999999999999999999999999999999887653

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=100.00  E-value=1e-54  Score=375.70  Aligned_cols=218  Identities=21%  Similarity=0.279  Sum_probs=189.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCeeEEEEcceeCCC-ChHH-hhcce
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML--PVSSGTAKIYNHDIRT-DMTT-IRRSL   76 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~--~p~~G~i~~~g~~~~~-~~~~-~~~~i   76 (251)
                      |+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|++  +|++|+|.++|+++.. .... .+..+
T Consensus         1 l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   79 (243)
T TIGR01978         1 LKIKDLHVSVE-DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL   79 (243)
T ss_pred             CeEeeEEEEEC-CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence            68999999996 478999999999999999999999999999999999995  7999999999998754 2222 23469


Q ss_pred             EEEccCCCCCCCCCHHHHHHHHHHhcC-------CChHHHHHHHHHHHHHcCCC-cccCCCCC-cCChhHHHHHHHHHHH
Q psy7367          77 GVCPQYNALFDKLTVEEHMWFYSQLKQ-------VPKDLAQLEISNMIVDLGIP-HKRTSLAN-TLSGGMQRKLSVAMAF  147 (251)
Q Consensus        77 ~~v~q~~~l~~~ltv~e~l~~~~~~~~-------~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgG~kqrv~ia~al  147 (251)
                      +|+||++.+++.+|+.||+.+......       ....+..+++.++++.+++. ...++++. +||||||||++|||||
T Consensus        80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al  159 (243)
T TIGR01978        80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMA  159 (243)
T ss_pred             EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHH
Confidence            999999999999999999987543211       12233345788999999997 46778887 5999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhh-cCEEEEeeCCEEEeecCHHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLL-GDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +.+|++|||||||++||+.+++.++++|++++ +|.|||++|||++++..+ ||++++|++|+++..|+++...
T Consensus       160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (243)
T TIGR01978       160 LLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAK  233 (243)
T ss_pred             hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence            99999999999999999999999999999986 589999999999999998 8999999999999999886543

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-54  Score=379.14  Aligned_cols=218  Identities=24%  Similarity=0.369  Sum_probs=192.5

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~---~~~~~   72 (251)
                      ++++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++..   ....+
T Consensus         5 l~i~~v~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~   83 (258)
T PRK14241          5 IDVKDLNIYYGS-FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV   83 (258)
T ss_pred             EEEeeEEEEECC-EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence            578999999964 6799999999999999999999999999999999999974     79999999998742   23355


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      ++.++|+||++.+++.+||+||+.+....++. ......+.+.++++.+++.    +..++++.+|||||||||+|||||
T Consensus        84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral  163 (258)
T PRK14241         84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAI  163 (258)
T ss_pred             hcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence            77899999999999999999999886654432 3344456788899999984    467889999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEee------CCEEEeecCHHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIA------AGKLQCCGSSVFLK  219 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~------~G~i~~~g~~~~~~  219 (251)
                      +.+|+++||||||+|||+.++..++++|++++++.|||++||+++++.++|||+++|+      +|++++.|+++++.
T Consensus       164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~  241 (258)
T PRK14241        164 AVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIF  241 (258)
T ss_pred             hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHHH
Confidence            9999999999999999999999999999998767999999999999999999999997      79999999987653

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-54  Score=376.29  Aligned_cols=217  Identities=27%  Similarity=0.397  Sum_probs=191.8

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCeeEEEEcceeCCC-ChHHhhcce
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP---VSSGTAKIYNHDIRT-DMTTIRRSL   76 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~-~~~~~~~~i   76 (251)
                      ++++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++   |++|+|.++|+++.. .....++.+
T Consensus         3 ~~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i   81 (246)
T PRK14269          3 AKTTNLNLFYGK-KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV   81 (246)
T ss_pred             eeeeeeEEEECC-EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence            578999999964 789999999999999999999999999999999999974   799999999999854 234557789


Q ss_pred             EEEccCCCCCCCCCHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHHccC
Q psy7367          77 GVCPQYNALFDKLTVEEHMWFYSQLKQV--PKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAFIGG  150 (251)
Q Consensus        77 ~~v~q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al~~~  150 (251)
                      +|+||++.+|+ .|++||+.++...++.  ......+++.++++.+++.    +..++++.+||||||||++|||||+.+
T Consensus        82 ~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~  160 (246)
T PRK14269         82 GMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK  160 (246)
T ss_pred             EEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            99999999887 6999999886544332  1233445678999999995    456788999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         151 SRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       151 p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |+++||||||+|||+.++..+.+.|.++.+++|||++||+++++.++||++++|++|+++..|++.++.
T Consensus       161 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  229 (246)
T PRK14269        161 PKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF  229 (246)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence            999999999999999999999999999877899999999999999999999999999999999887653

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=6.2e-55  Score=381.32  Aligned_cols=205  Identities=23%  Similarity=0.348  Sum_probs=186.0

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.    .+++.++|+|
T Consensus        13 l~i~~l~~~~~~-~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~----~~~~~i~~v~   87 (257)
T PRK11247         13 LLLNAVSKRYGE-RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA----EAREDTRLMF   87 (257)
T ss_pred             EEEEEEEEEECC-cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH----HhhCceEEEe
Confidence            578999999964 78999999999999999999999999999999999999999999999987652    3467899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++.+||+||+.+...  .    ...+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||
T Consensus        88 q~~~l~~~~tv~enl~~~~~--~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt  161 (257)
T PRK11247         88 QDARLLPWKKVIDNVGLGLK--G----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPL  161 (257)
T ss_pred             cCccCCCCCcHHHHHHhccc--c----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            99999988999999987531  1    12356788999999999899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhh-h-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHH
Q psy7367         161 SGVDPYSRRSIWELLIKY-K-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  216 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l-~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~  216 (251)
                      +|||+.++..+.++|.++ + .+.|||++|||++++..+||++++|++|+++..++.+
T Consensus       162 ~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~  219 (257)
T PRK11247        162 GALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD  219 (257)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence            999999999999999997 4 3899999999999999999999999999999887653

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-54  Score=385.60  Aligned_cols=217  Identities=24%  Similarity=0.429  Sum_probs=190.2

Q ss_pred             CEEEeEEEEeCCC----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC------ChH
Q psy7367           1 MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT------DMT   70 (251)
Q Consensus         1 l~i~~l~~~y~~~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~------~~~   70 (251)
                      |+++|++++|++.    ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..      ...
T Consensus         7 l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   86 (289)
T PRK13645          7 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK   86 (289)
T ss_pred             EEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHH
Confidence            5789999999642    249999999999999999999999999999999999999999999999998741      223


Q ss_pred             HhhcceEEEccCCC--CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHH
Q psy7367          71 TIRRSLGVCPQYNA--LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        71 ~~~~~i~~v~q~~~--l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      .+++.|+|+||++.  +++ .|++||+.+.....+.......+++.++++.++|. +..++++.+||||||||++|||||
T Consensus        87 ~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral  165 (289)
T PRK13645         87 RLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGII  165 (289)
T ss_pred             HHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence            45678999999973  444 69999998865443444444456788899999995 678999999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      +.+|++|||||||+|||+.+++.++++|+++. + |+|||++||+++++.++||++++|++|+++..|+++++
T Consensus       166 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  238 (289)
T PRK13645        166 AMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI  238 (289)
T ss_pred             HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            99999999999999999999999999999984 3 89999999999999999999999999999999987665

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.9e-55  Score=377.33  Aligned_cols=213  Identities=29%  Similarity=0.431  Sum_probs=189.8

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      ++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+++.++|+
T Consensus         4 l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~   82 (241)
T PRK14250          4 IEFKEVSYSSFG-KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMV   82 (241)
T ss_pred             EEEEeEEEEeCC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEE
Confidence            578999999964 679999999999999999999999999999999999999999999999998753 234556789999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE  158 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE  158 (251)
                      ||++.+++ .|++||+.+.....+  .  ...++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||
T Consensus        83 ~q~~~~~~-~tv~e~l~~~~~~~~--~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE  157 (241)
T PRK14250         83 FQQPHLFE-GTVKDNIEYGPMLKG--E--KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDE  157 (241)
T ss_pred             ecCchhch-hhHHHHHhcchhhcC--c--HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            99998887 699999987543322  1  134678899999997 57889999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         159 PTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       159 Pt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      ||++||+.+++.+.+.|++++  .|.|||++|||++++..+||++++|++|+++..|++.++.
T Consensus       158 Pt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  220 (241)
T PRK14250        158 PTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFF  220 (241)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence            999999999999999999984  3899999999999999999999999999999999887653

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=100.00  E-value=1e-54  Score=369.46  Aligned_cols=210  Identities=23%  Similarity=0.417  Sum_probs=186.2

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|++++|+.   +++++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ...++.++|+|
T Consensus         1 ~~~~~l~~~~~~---~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~i~~v~   76 (213)
T TIGR01277         1 LALDKVRYEYEH---LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGL-APYQRPVSMLF   76 (213)
T ss_pred             CeEEeeeEEeCC---cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccC-ChhccceEEEe
Confidence            579999999952   57899999999999999999999999999999999999999999999987532 23567899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+|+.+|+.||+.+............++++.++++.+++.+..++++.+||+|||||++|||||+.+|+++||||||
T Consensus        77 q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt  156 (213)
T TIGR01277        77 QENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPF  156 (213)
T ss_pred             ccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            99999998999999987543211112223456888999999998889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367         161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  214 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~  214 (251)
                      ++||+.++..+.++|.++. + +.|||++||+++++..+||++++|++|++++.|+
T Consensus       157 ~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       157 SALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence            9999999999999999984 3 8999999999999999999999999999998764

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=100.00  E-value=2.2e-54  Score=372.12  Aligned_cols=217  Identities=28%  Similarity=0.425  Sum_probs=196.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++++|++ +.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ..++.++|+|
T Consensus         1 l~~~~l~~~~~~-~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~~i~~~~   78 (232)
T cd03300           1 IELENVSKFYGG-FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP-PHKRPVNTVF   78 (232)
T ss_pred             CEEEeEEEEeCC-eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC-hhhcceEEEe
Confidence            579999999964 78999999999999999999999999999999999999999999999999885422 2357899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+|+.+|+.||+.+....++.......+++.++++.+++.+..++.+.+||+||+||++|||||+.+|+++||||||
T Consensus        79 q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~  158 (232)
T cd03300          79 QNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPL  158 (232)
T ss_pred             cccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            99999988999999988765554444455567889999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +|||+.+++.++++|++++ + |.|||++||+++++..+||++++|++|++++.|++..+.
T Consensus       159 ~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~  219 (232)
T cd03300         159 GALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIY  219 (232)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHH
Confidence            9999999999999999985 3 899999999999999999999999999999999876553

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-54  Score=379.77  Aligned_cols=217  Identities=24%  Similarity=0.381  Sum_probs=191.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~---~~~~~   72 (251)
                      |+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|+++|+++..   ....+
T Consensus        20 l~~~nl~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~   98 (267)
T PRK14235         20 MRARDVSVFYGE-KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVEL   98 (267)
T ss_pred             EEEEeEEEEECC-EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHH
Confidence            578999999964 7899999999999999999999999999999999999874     89999999998852   22345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHcCCCc----ccCCCCCcCChhHHHHHHHHHH
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV--PKDLAQLEISNMIVDLGIPH----KRTSLANTLSGGMQRKLSVAMA  146 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~kqrv~ia~a  146 (251)
                      ++.++|+||++.+++. |+.||+.+....++.  ......+++.++++.+++.+    ..++++.+||||||||++||||
T Consensus        99 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara  177 (267)
T PRK14235         99 RARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARA  177 (267)
T ss_pred             hhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHH
Confidence            6789999999998875 999999886544332  23334566889999999953    4678899999999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |+.+|++|||||||+|||+.++..+.++|+++.++.|||++||+++++..+||++++|++|+++..|+++.+.
T Consensus       178 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  250 (267)
T PRK14235        178 IAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMF  250 (267)
T ss_pred             HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence            9999999999999999999999999999999876889999999999999999999999999999999887653

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-54  Score=384.03  Aligned_cols=217  Identities=28%  Similarity=0.435  Sum_probs=194.1

Q ss_pred             CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCe---eEEEEcceeCCC-ChHHhhcc
Q psy7367           1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSS---GTAKIYNHDIRT-DMTTIRRS   75 (251)
Q Consensus         1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~---G~i~~~g~~~~~-~~~~~~~~   75 (251)
                      |+++|++++|++ .+++|+++||+|++||+++|+||||||||||+++|+|+++|++   |+|+++|+++.. .....+++
T Consensus         6 l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~   85 (282)
T PRK13640          6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREK   85 (282)
T ss_pred             EEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhh
Confidence            578999999953 2469999999999999999999999999999999999999997   999999999854 23345678


Q ss_pred             eEEEccCCC-CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEE
Q psy7367          76 LGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTV  154 (251)
Q Consensus        76 i~~v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ll  154 (251)
                      +||+||++. +++.+||+||+.+.....+...++..+++.++++.++|.+..++++.+|||||+||++|||||+.+|++|
T Consensus        86 ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~ll  165 (282)
T PRK13640         86 VGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKII  165 (282)
T ss_pred             eEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            999999984 5677899999988655555555555677899999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         155 ILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       155 llDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      ||||||+|||+.++..+.++|+++. + |.|||++||+++++. +|||+++|++|++++.|+++++
T Consensus       166 llDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~  230 (282)
T PRK13640        166 ILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEI  230 (282)
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999984 4 899999999999995 7999999999999999998765

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.5e-54  Score=375.93  Aligned_cols=218  Identities=26%  Similarity=0.392  Sum_probs=191.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP--V---SSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~--p---~~G~i~~~g~~~~~---~~~~~   72 (251)
                      |+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++  |   ++|+|+++|+++..   ....+
T Consensus         5 l~~~nl~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~   83 (252)
T PRK14256          5 VKLEQLNVHFGK-NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSI   83 (252)
T ss_pred             EEEEEEEEEeCC-eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHh
Confidence            578999999964 679999999999999999999999999999999999986  4   69999999998842   12345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCCc----ccCCCCCcCChhHHHHHHHHHHH
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGIPH----KRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      ++.++|+||++.+++.+|+.||+.+.....+. ...+..+++.++++.+++..    ..++.+.+||||||||++|||||
T Consensus        84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral  163 (252)
T PRK14256         84 RRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTI  163 (252)
T ss_pred             hccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHH
Confidence            77899999999999989999999876544332 23344556889999999853    56788999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +.+|++|||||||+|||+.+++.++++|+++.++.|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus       164 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  235 (252)
T PRK14256        164 AVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIF  235 (252)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999976789999999999999999999999999999999987654

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-54  Score=381.08  Aligned_cols=217  Identities=21%  Similarity=0.307  Sum_probs=192.3

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      |+++|++++|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....++.++|+
T Consensus         8 l~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v   86 (265)
T PRK10253          8 LRGEQLTLGYGK-YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLL   86 (265)
T ss_pred             EEEEEEEEEECC-EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEe
Confidence            578999999964 679999999999999999999999999999999999999999999999998753 334456789999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHH-hcC---CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQ-LKQ---VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI  155 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~-~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll  155 (251)
                      ||++.+++.+|++||+.+... ...   ...+...+++.++++.+++.+..++++.+||||||||++|||||+.+|+++|
T Consensus        87 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll  166 (265)
T PRK10253         87 AQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIML  166 (265)
T ss_pred             eccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEE
Confidence            999999988999999987521 110   1122334568899999999988899999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         156 LDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       156 lDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      |||||+|||+.+++.+.++|.++. + |.|||++|||++++..+||++++|++|+++..|++.++
T Consensus       167 lDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  231 (265)
T PRK10253        167 LDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI  231 (265)
T ss_pred             EeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999984 3 89999999999999999999999999999999988654

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-54  Score=373.21  Aligned_cols=215  Identities=22%  Similarity=0.366  Sum_probs=189.0

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|++++|++ ..  .++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... .++.++|+|
T Consensus         2 l~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~i~~~~   77 (232)
T PRK10771          2 LKLTDITWLYHH-LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP-SRRPVSMLF   77 (232)
T ss_pred             eEEEEEEEEECC-cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh-hhccEEEEe
Confidence            578999999963 33  49999999999999999999999999999999999999999999998753221 246799999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++.+|+.||+.+.............+++.++++.+++.+..++++.+||||||||++||||++.+|+++||||||
T Consensus        78 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~  157 (232)
T PRK10771         78 QENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPF  157 (232)
T ss_pred             cccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            99999998999999987532111112234557889999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +|||+.+++.+.++|.++. + |.|||++|||++++..+||++++|++|++++.|+++.+.
T Consensus       158 ~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~  218 (232)
T PRK10771        158 SALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL  218 (232)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            9999999999999999984 3 899999999999999999999999999999999887654

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-54  Score=383.37  Aligned_cols=219  Identities=27%  Similarity=0.416  Sum_probs=194.0

Q ss_pred             CEEEeEEEEeCC-----CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC--hHHhh
Q psy7367           1 MAIQNLSKRFPN-----GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD--MTTIR   73 (251)
Q Consensus         1 l~i~~l~~~y~~-----~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~   73 (251)
                      ++++|++++|++     .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...  ...++
T Consensus         5 l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~   84 (280)
T PRK13633          5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIR   84 (280)
T ss_pred             EEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHh
Confidence            578999999963     24699999999999999999999999999999999999999999999999988532  23457


Q ss_pred             cceEEEccCCC-CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367          74 RSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR  152 (251)
Q Consensus        74 ~~i~~v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~  152 (251)
                      +.++|+||++. .+...||.+|+.|.....+....+..+++.++++.++|.+..++++.+||||||||++|||||+.+|+
T Consensus        85 ~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~  164 (280)
T PRK13633         85 NKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPE  164 (280)
T ss_pred             hheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            88999999974 23346999999987655455555556778999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         153 TVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       153 llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      ++||||||+|||+.++..++++|++++ + |.|||++||+++++.. ||++++|++|++++.|+++++..
T Consensus       165 llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~  233 (280)
T PRK13633        165 CIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFK  233 (280)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence            999999999999999999999999984 3 8999999999999986 99999999999999999876643

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-54  Score=380.42  Aligned_cols=218  Identities=26%  Similarity=0.396  Sum_probs=194.1

Q ss_pred             CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++|++++|++. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ....+++.++|
T Consensus         8 l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   87 (269)
T PRK13648          8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGI   87 (269)
T ss_pred             EEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeE
Confidence            5789999999642 459999999999999999999999999999999999999999999999998853 33456778999


Q ss_pred             EccCCC-CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367          79 CPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD  157 (251)
Q Consensus        79 v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD  157 (251)
                      +||++. +++..|+.+|+.+.....+.......+++.++++.+++.+..++++.+||+|||||++|||||+.+|++||||
T Consensus        88 v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD  167 (269)
T PRK13648         88 VFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILD  167 (269)
T ss_pred             EEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            999984 6777899999988755444444455567889999999999899999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         158 EPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       158 EPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |||+|||+.+++.++++|+++. + |.|||++||+++++.. |||+++|++|++++.|+++.+.
T Consensus       168 EPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~  230 (269)
T PRK13648        168 EATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIF  230 (269)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence            9999999999999999999984 4 8999999999999985 9999999999999999987653

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=100.00  E-value=6.2e-55  Score=381.86  Aligned_cols=217  Identities=24%  Similarity=0.373  Sum_probs=191.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEcceeCCC------ChHH
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS---SGTAKIYNHDIRT------DMTT   71 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~------~~~~   71 (251)
                      |+++||+++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|+   +|+|+++|+++..      ....
T Consensus         5 l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~   83 (262)
T PRK09984          5 IRVEKLAKTFN-QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRK   83 (262)
T ss_pred             EEEeeEEEEeC-CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHH
Confidence            57899999996 478999999999999999999999999999999999999986   4999999998743      1234


Q ss_pred             hhcceEEEccCCCCCCCCCHHHHHHHHHHh--------cCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHH
Q psy7367          72 IRRSLGVCPQYNALFDKLTVEEHMWFYSQL--------KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSV  143 (251)
Q Consensus        72 ~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~--------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~i  143 (251)
                      +++.++|+||++.+++.+|++||+.+....        .+........++.++++.+++.+..++++.+||+|||||++|
T Consensus        84 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l  163 (262)
T PRK09984         84 SRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAI  163 (262)
T ss_pred             HHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHH
Confidence            467899999999999999999999875321        011122344578999999999988899999999999999999


Q ss_pred             HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         144 AMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       144 a~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      ||||+.+|++|||||||+|||+.+++.+.++|+++. + |.|||++|||++++..+||++++|++|+++..|+++++
T Consensus       164 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~  240 (262)
T PRK09984        164 ARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF  240 (262)
T ss_pred             HHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence            999999999999999999999999999999999985 3 89999999999999999999999999999999998765

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=2.1e-54  Score=390.29  Aligned_cols=220  Identities=25%  Similarity=0.374  Sum_probs=193.2

Q ss_pred             CEEEeEEEEeCC---CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEcceeCCC-ChHH--
Q psy7367           1 MAIQNLSKRFPN---GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS---SGTAKIYNHDIRT-DMTT--   71 (251)
Q Consensus         1 l~i~~l~~~y~~---~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~-~~~~--   71 (251)
                      |+++|+++.|+.   ...+|+|+||+|++||+++|+|+||||||||+++|+|+++|+   +|+|+++|+++.. ...+  
T Consensus        13 L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~   92 (330)
T PRK09473         13 LDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELN   92 (330)
T ss_pred             EEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHH
Confidence            578999999942   246999999999999999999999999999999999999996   9999999999854 2222  


Q ss_pred             -hh-cceEEEccCC--CCCCCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHHHcCCCc---ccCCCCCcCChhHHHHHHH
Q psy7367          72 -IR-RSLGVCPQYN--ALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIVDLGIPH---KRTSLANTLSGGMQRKLSV  143 (251)
Q Consensus        72 -~~-~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgG~kqrv~i  143 (251)
                       +| +.|+|+||++  .+++.+|+.+++.+....+ +....+..+++.++++.++|.+   ..++++++|||||+|||+|
T Consensus        93 ~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~I  172 (330)
T PRK09473         93 KLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMI  172 (330)
T ss_pred             HHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHH
Confidence             23 4799999998  6888899999998765543 3445555678899999999974   3578999999999999999


Q ss_pred             HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         144 AMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       144 a~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      ||||+.+|++||+||||++||+.++..++++|++++ + |.|+|++|||++.+.++|||+++|++|++++.|+++++..
T Consensus       173 ArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~~  251 (330)
T PRK09473        173 AMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFY  251 (330)
T ss_pred             HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            999999999999999999999999999999999985 3 8999999999999999999999999999999999876643

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=100.00  E-value=1.4e-54  Score=380.81  Aligned_cols=220  Identities=23%  Similarity=0.354  Sum_probs=192.5

Q ss_pred             CEEEeEEEEeCC--------CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHH
Q psy7367           1 MAIQNLSKRFPN--------GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTT   71 (251)
Q Consensus         1 l~i~~l~~~y~~--------~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~   71 (251)
                      |+++||+++|++        .+++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++.. ....
T Consensus         5 l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~   84 (267)
T PRK15112          5 LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSY   84 (267)
T ss_pred             EEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhh
Confidence            579999999952        2469999999999999999999999999999999999999999999999998853 2233


Q ss_pred             hhcceEEEccCCC--CCCCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHH
Q psy7367          72 IRRSLGVCPQYNA--LFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        72 ~~~~i~~v~q~~~--l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      .++.++|+||++.  +++.+|+.+++.+..... ........+++.++++.+++. ...++++.+||||||||++|||||
T Consensus        85 ~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral  164 (267)
T PRK15112         85 RSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARAL  164 (267)
T ss_pred             HhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHH
Confidence            4567999999974  577889999998865543 233344456788999999995 677889999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      +.+|++|||||||++||+.+++.+.++|.++. + |.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus       165 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  239 (267)
T PRK15112        165 ILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA  239 (267)
T ss_pred             HhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhc
Confidence            99999999999999999999999999999984 4 8999999999999999999999999999999998876643

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.1e-54  Score=393.84  Aligned_cols=210  Identities=22%  Similarity=0.396  Sum_probs=188.3

Q ss_pred             eEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-----hHHhhcceEEE
Q psy7367           5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-----MTTIRRSLGVC   79 (251)
Q Consensus         5 ~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~~i~~v   79 (251)
                      ||+|+|++ +. + ++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...     ....++.++|+
T Consensus         4 ~l~~~~~~-~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v   80 (354)
T TIGR02142         4 RFSKRLGD-FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV   80 (354)
T ss_pred             EEEEEECC-EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence            89999964 44 5 99999999999999999999999999999999999999999999987431     12346789999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP  159 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEP  159 (251)
                      ||++.+|+++||+||+.|+....  ...+..+++.++++.++|.+..++++.+|||||||||+|||||+.+|++||||||
T Consensus        81 ~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEP  158 (354)
T TIGR02142        81 FQEARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEP  158 (354)
T ss_pred             ecCCccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            99999999999999999865432  2233445688999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         160 TSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       160 t~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |+|||+.+++.++++|+++. + |.|||++|||++++..+||++++|++|+++..|+++++.
T Consensus       159 ts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  220 (354)
T TIGR02142       159 LAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW  220 (354)
T ss_pred             CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence            99999999999999999984 4 899999999999999999999999999999999987654

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5e-54  Score=373.43  Aligned_cols=217  Identities=25%  Similarity=0.398  Sum_probs=190.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~---~~~~~   72 (251)
                      |+++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+.+|     ++|+|+++|+++..   ....+
T Consensus         4 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~   82 (250)
T PRK14240          4 ISVKDLDLFYGD-FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL   82 (250)
T ss_pred             EEEEEEEEEECC-ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence            578999999964 6799999999999999999999999999999999999763     69999999998753   23345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      ++.++|+||++.+++ +|++||+.+.....+. ......+++.++++.+++.    +..++++.+||||||||++|||||
T Consensus        83 ~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral  161 (250)
T PRK14240         83 RKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL  161 (250)
T ss_pred             hccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence            778999999998887 8999999986554443 2334456788889999874    456889999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +.+|++|||||||+|||+.++..+.++|++++++.|||++||+++++.++||++++|++|+++..|+++.+.
T Consensus       162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  233 (250)
T PRK14240        162 AVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLF  233 (250)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999876899999999999999999999999999999999887653

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.1e-54  Score=371.61  Aligned_cols=217  Identities=26%  Similarity=0.424  Sum_probs=195.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|++++|++ +++|+++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++.++|+|
T Consensus         1 i~i~~l~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~-~~~~~i~~~~   78 (237)
T TIGR00968         1 IEIANISKRFGS-FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH-ARDRKIGFVF   78 (237)
T ss_pred             CEEEEEEEEECC-eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC-hhhcCEEEEe
Confidence            689999999964 68999999999999999999999999999999999999999999999999875322 2457899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+|+.+|+.||+.+....++.......+.+.++++.+++.+..++.+.+||+||+||++|||||+.+|+++||||||
T Consensus        79 q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~  158 (237)
T TIGR00968        79 QHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPF  158 (237)
T ss_pred             cChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            99999998999999987665544444444567889999999998899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +|||+.+++.++++|.+++ + ++|||++||+++++.++||++++|++|++++.|+++.+.
T Consensus       159 ~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~  219 (237)
T TIGR00968       159 GALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVY  219 (237)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence            9999999999999999985 4 899999999999999999999999999999999887664

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=100.00  E-value=5.2e-54  Score=370.55  Aligned_cols=216  Identities=28%  Similarity=0.415  Sum_probs=194.5

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++++|++ + +|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... .++.++|+|
T Consensus         1 l~~~~l~~~~~~-~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~-~~~~i~~~~   77 (235)
T cd03299           1 LKVENLSKDWKE-F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP-EKRDISYVP   77 (235)
T ss_pred             CeeEeEEEEeCC-c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh-hHcCEEEEe
Confidence            579999999963 4 8999999999999999999999999999999999999999999999998854222 357899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+|+.+|+.||+.+.....+....+..+.+.++++.+++.+..++++.+|||||+||++|||||+.+|++++|||||
T Consensus        78 q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt  157 (235)
T cd03299          78 QNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPF  157 (235)
T ss_pred             ecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCc
Confidence            99999988999999988655444444455567889999999999899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +|||+.+++.++++|+++. + +.|||++||+++++..+||++++|++|++++.|+++.+.
T Consensus       158 ~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  218 (235)
T cd03299         158 SALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF  218 (235)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence            9999999999999999984 3 899999999999999999999999999999999876553

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=100.00  E-value=1.7e-54  Score=373.84  Aligned_cols=200  Identities=28%  Similarity=0.461  Sum_probs=179.4

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc-cCCCCCCCCCHH
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP-QYNALFDKLTVE   92 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~-q~~~l~~~ltv~   92 (251)
                      +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++......+++.++|+| |.+.+++.+|++
T Consensus        34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~  113 (236)
T cd03267          34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVI  113 (236)
T ss_pred             eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHH
Confidence            3699999999999999999999999999999999999999999999999886433334567899998 567788889999


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH
Q psy7367          93 EHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW  172 (251)
Q Consensus        93 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~  172 (251)
                      ||+.+....++....+..+++.++++.+++.+..++++.+||||||||++||+||+.+|+++||||||+|||+.+++.+.
T Consensus       114 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~  193 (236)
T cd03267         114 DSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIR  193 (236)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence            99988766555444555567888999999998889999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367         173 ELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  213 (251)
Q Consensus       173 ~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g  213 (251)
                      ++|.+++ + +.|||++||+++++..+||++++|++|++++.|
T Consensus       194 ~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g  236 (236)
T cd03267         194 NFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG  236 (236)
T ss_pred             HHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence            9999984 3 899999999999999999999999999998654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.6e-54  Score=375.75  Aligned_cols=217  Identities=26%  Similarity=0.425  Sum_probs=191.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP--V---SSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~--p---~~G~i~~~g~~~~~---~~~~~   72 (251)
                      |+++|+++.|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++  |   ++|+|+++|+++..   ....+
T Consensus        13 l~i~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~   91 (259)
T PRK14274         13 YQINGMNLWYGQ-HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVEL   91 (259)
T ss_pred             EEEeeEEEEECC-eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHH
Confidence            478999999964 679999999999999999999999999999999999987  3   69999999998742   22345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      ++.++|+||++.+++. |++||+.+.....+. ...+..+++.++++.+++.    +..++++.+||||||||++|||||
T Consensus        92 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral  170 (259)
T PRK14274         92 RKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARAL  170 (259)
T ss_pred             hhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHH
Confidence            6789999999988875 999999886544432 2334455688899999985    346789999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +.+|+++||||||+|||+.++..++++|.+++++.|||++||+++++.++|||+++|++|+++..|+++++.
T Consensus       171 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  242 (259)
T PRK14274        171 ATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF  242 (259)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence            999999999999999999999999999999876899999999999999999999999999999999988764

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.6e-54  Score=374.04  Aligned_cols=217  Identities=25%  Similarity=0.389  Sum_probs=191.3

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~---~~~~~   72 (251)
                      ++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+|     ++|+|+++|+++..   .....
T Consensus         5 l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~   83 (251)
T PRK14270          5 MESKNLNLWYGE-KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVEL   83 (251)
T ss_pred             EEEEEeEEEECC-eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHH
Confidence            478999999964 7799999999999999999999999999999999999875     79999999998843   12345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      ++.++|+||++.+++ +|++||+.+.....+. ...+..+++.++++.+++.    +..++++.+||+|||||++|||||
T Consensus        84 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral  162 (251)
T PRK14270         84 RKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTI  162 (251)
T ss_pred             HhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence            678999999999887 8999999987554443 2334455678899999874    456789999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +.+|+++||||||+|||+.++..++++|+++.++.|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus       163 ~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  234 (251)
T PRK14270        163 AVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF  234 (251)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence            999999999999999999999999999999866799999999999999999999999999999999987653

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=100.00  E-value=3.2e-54  Score=368.74  Aligned_cols=208  Identities=31%  Similarity=0.510  Sum_probs=188.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...   .++.++|+|
T Consensus         1 l~l~~v~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~---~~~~~~~~~   76 (223)
T TIGR03740         1 LETKNLSKRFGK-QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK---DLHKIGSLI   76 (223)
T ss_pred             CEEEeEEEEECC-EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc---ccccEEEEc
Confidence            579999999964 7899999999999999999999999999999999999999999999999887421   135799999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++.+|++||+.++....+..    ..++.++++.+++.+..++++.+||+||+||++||||++.+|+++||||||
T Consensus        77 q~~~~~~~~t~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~  152 (223)
T TIGR03740        77 ESPPLYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPT  152 (223)
T ss_pred             CCCCccccCCHHHHHHHHHHHcCCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence            9999998899999998876544332    235778999999999899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHH
Q psy7367         161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  216 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~  216 (251)
                      +|||+.+++.++++|++++ +|.|||++|||++++..+|||+++|++|+++..|++.
T Consensus       153 ~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~  209 (223)
T TIGR03740       153 NGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKIN  209 (223)
T ss_pred             cCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChh
Confidence            9999999999999999985 5899999999999999999999999999999988864

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.8e-54  Score=373.17  Aligned_cols=218  Identities=22%  Similarity=0.391  Sum_probs=190.7

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCC---CCC--CeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM---LPV--SSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl---~~p--~~G~i~~~g~~~~~---~~~~~   72 (251)
                      |+++|+++.|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+   .+|  ++|+|.++|+++..   ....+
T Consensus         4 l~~~~~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~   82 (250)
T PRK14245          4 IDARDVNFWYGD-FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDEL   82 (250)
T ss_pred             EEEEEEEEEECC-EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHH
Confidence            578999999964 6799999999999999999999999999999999997   455  58999999998853   12345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCCc----ccCCCCCcCChhHHHHHHHHHHH
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIVDLGIPH----KRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      ++.++|+||++.+++ .|+.||+.+....++.. .....+++.++++.+++.+    ..++++.+||||||||++|||||
T Consensus        83 ~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral  161 (250)
T PRK14245         83 RKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAM  161 (250)
T ss_pred             hhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHH
Confidence            678999999998887 69999998865544332 2334566889999999853    56788999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      +.+|++|||||||+|||+.++..++++|+++.+++|||++|||++++.++|||+++|++|+++..|+++++.+
T Consensus       162 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~  234 (250)
T PRK14245        162 AVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT  234 (250)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence            9999999999999999999999999999998768999999999999999999999999999999999887643

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-54  Score=393.31  Aligned_cols=209  Identities=20%  Similarity=0.368  Sum_probs=187.4

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-----hHHhhcc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-----MTTIRRS   75 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~~   75 (251)
                      |++ ||+|+|++ +. + |+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++...     ....+++
T Consensus         2 l~~-~l~k~~~~-~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   77 (352)
T PRK11144          2 LEL-NFKQQLGD-LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR   77 (352)
T ss_pred             eEE-EEEEEeCC-EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence            355 99999964 43 3 89999999999999999999999999999999999999999999987431     2234678


Q ss_pred             eEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367          76 LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI  155 (251)
Q Consensus        76 i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll  155 (251)
                      ++|+||++.+|+++||+||+.+....      ...+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||
T Consensus        78 i~~v~q~~~l~~~~tv~enl~~~~~~------~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llL  151 (352)
T PRK11144         78 IGYVFQDARLFPHYKVRGNLRYGMAK------SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLL  151 (352)
T ss_pred             EEEEcCCcccCCCCcHHHHHHhhhhh------hhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            99999999999999999999885431      223568899999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         156 LDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       156 lDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |||||++||+.+++.+++.|+++. + |.|||++|||++++..+||++++|++|+++..|+++++.
T Consensus       152 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~  217 (352)
T PRK11144        152 MDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVW  217 (352)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence            999999999999999999999984 4 899999999999999999999999999999999987664

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.9e-54  Score=373.26  Aligned_cols=217  Identities=26%  Similarity=0.423  Sum_probs=189.7

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CC---CeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML--PV---SSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~--~p---~~G~i~~~g~~~~~---~~~~~   72 (251)
                      ++++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+.  +|   ++|+|+++|+++..   ....+
T Consensus         6 l~~~~l~~~~~~-~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~   84 (252)
T PRK14239          6 LQVSDLSVYYNK-KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDL   84 (252)
T ss_pred             EEEEeeEEEECC-eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhh
Confidence            478999999964 67999999999999999999999999999999999985  46   59999999998742   22345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      ++.++|+||++.+|+ +|++||+.+.....+.. .....+++.++++.+++.    +..++++.+||+|||||++|||||
T Consensus        85 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral  163 (252)
T PRK14239         85 RKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVL  163 (252)
T ss_pred             hhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence            678999999999887 79999998875544432 223445678899999874    456889999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +.+|++|||||||+|||+.++..++++|+++.++.|||++|||++++..+|||+++|++|++++.|++.++.
T Consensus       164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  235 (252)
T PRK14239        164 ATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF  235 (252)
T ss_pred             hcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999866799999999999999999999999999999999987653

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.5e-54  Score=379.60  Aligned_cols=218  Identities=27%  Similarity=0.395  Sum_probs=193.6

Q ss_pred             CEEEeEEEEeCCC--cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367           1 MAIQNLSKRFPNG--KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~~--~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~   77 (251)
                      |+++|++++|++.  ..+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++.. .....++.++
T Consensus         5 l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~   84 (277)
T PRK13642          5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIG   84 (277)
T ss_pred             EEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceE
Confidence            4789999999632  359999999999999999999999999999999999999999999999999854 3345678899


Q ss_pred             EEccCCC-CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367          78 VCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL  156 (251)
Q Consensus        78 ~v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll  156 (251)
                      |+||++. +++..||.||+.+.....+.......+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||
T Consensus        85 ~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llll  164 (277)
T PRK13642         85 MVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIIL  164 (277)
T ss_pred             EEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            9999984 566789999998765544444445556789999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         157 DEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       157 DEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      ||||+|||+.+++.++++|.++. + |.|||++||+++++. .||++++|++|++++.|+++++.
T Consensus       165 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~  228 (277)
T PRK13642        165 DESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSELF  228 (277)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence            99999999999999999999985 4 899999999999997 59999999999999999987653

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.1e-54  Score=388.60  Aligned_cols=219  Identities=20%  Similarity=0.294  Sum_probs=188.6

Q ss_pred             CEEEeEEEEeC---CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC----CCeeEEEEcceeCCC-ChHH-
Q psy7367           1 MAIQNLSKRFP---NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP----VSSGTAKIYNHDIRT-DMTT-   71 (251)
Q Consensus         1 l~i~~l~~~y~---~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~----p~~G~i~~~g~~~~~-~~~~-   71 (251)
                      |+++||+++|+   +...+|+|+||+|++||+++|+|+||||||||+++|+|+++    |++|+|+++|+++.. .... 
T Consensus         4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~   83 (330)
T PRK15093          4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER   83 (330)
T ss_pred             EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence            57999999994   22569999999999999999999999999999999999986    589999999999853 2222 


Q ss_pred             --h-hcceEEEccCCC--CCCCCCHHHHHHHHHHhc---C---CChHHHHHHHHHHHHHcCCCc---ccCCCCCcCChhH
Q psy7367          72 --I-RRSLGVCPQYNA--LFDKLTVEEHMWFYSQLK---Q---VPKDLAQLEISNMIVDLGIPH---KRTSLANTLSGGM  137 (251)
Q Consensus        72 --~-~~~i~~v~q~~~--l~~~ltv~e~l~~~~~~~---~---~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgG~  137 (251)
                        . ++.|+|+||++.  +++.+||.+++.+.....   +   ....+..+++.++++.++|.+   ..++++.+|||||
T Consensus        84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~  163 (330)
T PRK15093         84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGE  163 (330)
T ss_pred             HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHH
Confidence              2 357999999985  677899999997643211   1   111334567889999999974   4588999999999


Q ss_pred             HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCH
Q psy7367         138 QRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  215 (251)
Q Consensus       138 kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~  215 (251)
                      ||||+|||||+.+|++|||||||++||+.++..++++|++++ + |.|||+||||++++.++|||+++|++|+|++.|++
T Consensus       164 ~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~~  243 (330)
T PRK15093        164 CQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPS  243 (330)
T ss_pred             HHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence            999999999999999999999999999999999999999985 3 89999999999999999999999999999999998


Q ss_pred             HHHH
Q psy7367         216 VFLK  219 (251)
Q Consensus       216 ~~~~  219 (251)
                      +++.
T Consensus       244 ~~i~  247 (330)
T PRK15093        244 KELV  247 (330)
T ss_pred             HHHH
Confidence            7654

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.7e-54  Score=377.97  Aligned_cols=216  Identities=24%  Similarity=0.317  Sum_probs=189.2

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~~   72 (251)
                      |+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++..   ....+
T Consensus        14 l~i~nl~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~   92 (269)
T PRK14259         14 ISLQNVTISYGT-FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEV   92 (269)
T ss_pred             EEEEeEEEEECC-EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHH
Confidence            578999999964 779999999999999999999999999999999999987     699999999998742   23456


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      ++.++|+||++.+|+ .||+||+.+.....+... ...+++.++++.+++.    +..++++.+||+|||||++|||||+
T Consensus        93 ~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~  170 (269)
T PRK14259         93 RRRIGMVFQQPNPFP-KSIYENIAFGARINGYTG-DMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIA  170 (269)
T ss_pred             hhceEEEccCCccch-hhHHHHHhhhhhhcCCcH-HHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHh
Confidence            678999999999887 499999988765443322 2345677888888763    4578899999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeC-----------CEEEeecCHHH
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAA-----------GKLQCCGSSVF  217 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~-----------G~i~~~g~~~~  217 (251)
                      .+|++|||||||+|||+.+++.++++|++++++.|||++||+++++..+||++++|++           |++++.|+++.
T Consensus       171 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~  250 (269)
T PRK14259        171 IEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKK  250 (269)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHH
Confidence            9999999999999999999999999999987689999999999999999999999996           67899999876


Q ss_pred             HH
Q psy7367         218 LK  219 (251)
Q Consensus       218 ~~  219 (251)
                      +.
T Consensus       251 ~~  252 (269)
T PRK14259        251 IF  252 (269)
T ss_pred             HH
Confidence            64

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=100.00  E-value=3.7e-54  Score=366.12  Aligned_cols=205  Identities=28%  Similarity=0.455  Sum_probs=182.1

Q ss_pred             EEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-----ChHHhhcceE
Q psy7367           3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-----DMTTIRRSLG   77 (251)
Q Consensus         3 i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-----~~~~~~~~i~   77 (251)
                      +-||+|+|++ +.+  |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++..     .....++.++
T Consensus         3 ~~~l~~~~~~-~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~   78 (214)
T cd03297           3 CVDIEKRLPD-FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG   78 (214)
T ss_pred             eeeeeEecCC-eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE
Confidence            3499999964 555  99999999 9999999999999999999999999999999999998742     1223567899


Q ss_pred             EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367          78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD  157 (251)
Q Consensus        78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD  157 (251)
                      |+||++.+++.+|+.||+.+.....  .....++++.++++.+++.+..++++.+||||||||++|||||+.+|+++|||
T Consensus        79 ~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD  156 (214)
T cd03297          79 LVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLD  156 (214)
T ss_pred             EEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            9999999999999999998765332  22334457889999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367         158 EPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  213 (251)
Q Consensus       158 EPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g  213 (251)
                      |||+|||+.+++.+.++|+++. + |.|||++|||++++..+||++++|++|++++.|
T Consensus       157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  214 (214)
T cd03297         157 EPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG  214 (214)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            9999999999999999999984 4 899999999999999999999999999998764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.6e-54  Score=378.22  Aligned_cols=221  Identities=27%  Similarity=0.438  Sum_probs=195.9

Q ss_pred             CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-C----CeeEEEEcceeCCC-ChH-
Q psy7367           1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-V----SSGTAKIYNHDIRT-DMT-   70 (251)
Q Consensus         1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-p----~~G~i~~~g~~~~~-~~~-   70 (251)
                      |+++||+..|...   ..+++||||++++||++||+|.|||||||+.++|+|+++ |    .+|+|.|+|+++.. +.+ 
T Consensus         2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~   81 (316)
T COG0444           2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE   81 (316)
T ss_pred             ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence            6899999999532   369999999999999999999999999999999999997 4    57999999998854 222 


Q ss_pred             --Hhh-cceEEEccCC--CCCCCCCHHHHHHHHHHhcC-C-ChHHHHHHHHHHHHHcCCCc---ccCCCCCcCChhHHHH
Q psy7367          71 --TIR-RSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQ-V-PKDLAQLEISNMIVDLGIPH---KRTSLANTLSGGMQRK  140 (251)
Q Consensus        71 --~~~-~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgG~kqr  140 (251)
                        .+| +.|+|+||+|  .|.|-+|+.+.+.-..+.+. . .++++.+++.++|+.++|.+   ..+.+|++|||||+||
T Consensus        82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQR  161 (316)
T COG0444          82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQR  161 (316)
T ss_pred             HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHH
Confidence              333 6899999997  67888999999988777543 3 35667889999999999975   5689999999999999


Q ss_pred             HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         141 LSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       141 v~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      |.||.||+.+|++||+||||++||...+.+++++|++++  .|.++|+||||+..+.++||||+||..|+|++.|+.+++
T Consensus       162 V~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i  241 (316)
T COG0444         162 VMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEI  241 (316)
T ss_pred             HHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHH
Confidence            999999999999999999999999999999999999995  399999999999999999999999999999999998766


Q ss_pred             Hhh
Q psy7367         219 KNS  221 (251)
Q Consensus       219 ~~~  221 (251)
                      ...
T Consensus       242 ~~~  244 (316)
T COG0444         242 FKN  244 (316)
T ss_pred             hcC
Confidence            543

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.3e-54  Score=375.68  Aligned_cols=217  Identities=25%  Similarity=0.353  Sum_probs=189.4

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~~   72 (251)
                      ++++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+.+     |++|+|+++|+++..   ....+
T Consensus        22 l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~  100 (268)
T PRK14248         22 LEVKDLSIYYG-EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNL  100 (268)
T ss_pred             EEEEEEEEEeC-CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHH
Confidence            47899999996 4789999999999999999999999999999999999864     799999999998853   12345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      +++++|+||++.+|+. |++||+.+.....+.. .....+.+.++++.+++.    +..++++.+||||||||++|||||
T Consensus       101 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral  179 (268)
T PRK14248        101 RREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTL  179 (268)
T ss_pred             hccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHH
Confidence            6789999999998875 9999998865433322 223345677889999884    456789999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +.+|++|||||||+|||+.++..+.++|++++++.|||++|||++++..+|||+++|++|+++..|+++.+.
T Consensus       180 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  251 (268)
T PRK14248        180 AMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF  251 (268)
T ss_pred             hCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999876789999999999999999999999999999999987654

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.6e-54  Score=371.87  Aligned_cols=217  Identities=26%  Similarity=0.421  Sum_probs=190.3

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~~   72 (251)
                      ++++|++++|++ +++|+++||+|++||+++|+||||||||||+|+|+|+++     |++|+|.++|+++..   ....+
T Consensus         5 l~~~~l~~~~~~-~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~   83 (251)
T PRK14251          5 ISAKDVHLSYGN-YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVEL   83 (251)
T ss_pred             EEEEeeEEEECC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHh
Confidence            478999999964 789999999999999999999999999999999999987     489999999998742   22345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      ++.++|++|++.+|+ .|++||+.+.....+.. .....+++.++++.+++.    ...++++.+||||||||++|||||
T Consensus        84 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral  162 (251)
T PRK14251         84 RKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARAL  162 (251)
T ss_pred             hccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHH
Confidence            678999999998886 79999998865443332 223345678899999984    456789999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +.+|+++||||||++||+.+++.+.+.|++++++.|||++||+++++.++||++++|++|+++..|+++.+.
T Consensus       163 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  234 (251)
T PRK14251        163 AVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF  234 (251)
T ss_pred             hcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999876799999999999999999999999999999999887653

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-53  Score=371.08  Aligned_cols=218  Identities=26%  Similarity=0.364  Sum_probs=190.3

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----eeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS-----SGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~-----~G~i~~~g~~~~~---~~~~~   72 (251)
                      ++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|+     +|+|+++|+++..   ....+
T Consensus         5 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~   83 (252)
T PRK14272          5 LSAQDVNIYYG-DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAM   83 (252)
T ss_pred             EEEeeeEEEEC-CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHh
Confidence            47899999996 478999999999999999999999999999999999999874     8999999998742   22345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      ++.++|+||++.+++.+|+.||+.+.....+. ..+...+.+.++++.+++.    +..++++.+||||||||++|||||
T Consensus        84 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral  163 (252)
T PRK14272         84 RRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARAL  163 (252)
T ss_pred             hceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHH
Confidence            67899999999999989999999876543332 2333445667777877753    456888999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +.+|++|||||||+|||+.++..+.++|++++++.|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus       164 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  235 (252)
T PRK14272        164 AVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF  235 (252)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999876899999999999999999999999999999999987654

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-53  Score=370.62  Aligned_cols=218  Identities=26%  Similarity=0.399  Sum_probs=191.2

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~---~~~~~   72 (251)
                      |+++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++..   ....+
T Consensus         4 l~~~~l~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~   82 (250)
T PRK14262          4 IEIENFSAYYG-EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY   82 (250)
T ss_pred             EEEEeeEEEeC-CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence            57899999996 46899999999999999999999999999999999999874     89999999998753   12245


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCCc----ccCCCCCcCChhHHHHHHHHHHH
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIVDLGIPH----KRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      ++.++|+||++.+++ +|++||+.+.....+.. .....+.+.++++.+++..    ..++++.+||||||||++|||||
T Consensus        83 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al  161 (250)
T PRK14262         83 RKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARAL  161 (250)
T ss_pred             hhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHH
Confidence            678999999999887 89999998865443322 2334456788999999853    46889999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      +.+|++|||||||+|||+.++..+.++|++++++.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus       162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  234 (250)
T PRK14262        162 AVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVE  234 (250)
T ss_pred             hCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence            9999999999999999999999999999998768999999999999999999999999999999999876643

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=6.2e-54  Score=449.00  Aligned_cols=233  Identities=60%  Similarity=1.008  Sum_probs=217.1

Q ss_pred             CEEEeEEEEeC-CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFP-NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~-~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v   79 (251)
                      |+++||+|+|+ +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|+++|+++......+|+.+||+
T Consensus       929 L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~ 1008 (2272)
T TIGR01257       929 VCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMC 1008 (2272)
T ss_pred             EEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEE
Confidence            47899999995 24679999999999999999999999999999999999999999999999999865555667889999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP  159 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEP  159 (251)
                      ||++.+++.+||+||+.++.+.++.+.++.+++++++++.++|.+..++++.+|||||||||+||+||+.+|+++|||||
T Consensus      1009 pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEP 1088 (2272)
T TIGR01257      1009 PQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEP 1088 (2272)
T ss_pred             ecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence            99999999999999999988877766556667899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhcCcceEEEecc
Q psy7367         160 TSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMK  233 (251)
Q Consensus       160 t~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~  233 (251)
                      |+|||+.+++.++++|+++++|+|||++||+++++..+|||+++|++|++++.|++.++++.++.+|++.+.+.
T Consensus      1089 TSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g~gy~l~~~~~ 1162 (2272)
T TIGR01257      1089 TSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVRK 1162 (2272)
T ss_pred             CcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhcCCcEEEEEEec
Confidence            99999999999999999997799999999999999999999999999999999999999999999999887654

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=5.6e-54  Score=449.35  Aligned_cols=231  Identities=39%  Similarity=0.669  Sum_probs=213.6

Q ss_pred             CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v   79 (251)
                      |+++||+|+|++ ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.......++.|||+
T Consensus      1938 L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~ 2017 (2272)
T TIGR01257      1938 LRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYC 2017 (2272)
T ss_pred             EEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEE
Confidence            478999999964 2579999999999999999999999999999999999999999999999999865444567889999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP  159 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEP  159 (251)
                      ||++.+++.+||+||+.+++++++.+.++.++.++++++.++|.+..++++++||||||||++||+||+.+|+++|||||
T Consensus      2018 pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEP 2097 (2272)
T TIGR01257      2018 PQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEP 2097 (2272)
T ss_pred             eccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence            99999999999999999988887776666667788999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhcCcceEEEe
Q psy7367         160 TSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLD  231 (251)
Q Consensus       160 t~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~  231 (251)
                      |+||||.+++.++++|++++ +|+|||++||++++++.+|||+++|++|++++.|+++++++.++.+|.+.+.
T Consensus      2098 TsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g~g~~l~i~ 2170 (2272)
T TIGR01257      2098 TTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTMK 2170 (2272)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhCCceEEEEE
Confidence            99999999999999999985 5999999999999999999999999999999999999999999888776654

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=2.8e-54  Score=409.26  Aligned_cols=216  Identities=21%  Similarity=0.405  Sum_probs=192.7

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-hH-HhhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MT-TIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~-~~~~~i~~   78 (251)
                      ++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... .. ..++.++|
T Consensus         5 i~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~   83 (501)
T PRK10762          5 LQLKGIDKAFP-GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGI   83 (501)
T ss_pred             EEEeeeEEEeC-CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence            57899999996 47899999999999999999999999999999999999999999999999988532 22 23567999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEE
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLK----QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTV  154 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ll  154 (251)
                      +||++.+++.+||+||+.++...+    .....+.++++.++++.+++.+..++++.+|||||||||+|||||+.+|++|
T Consensus        84 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll  163 (501)
T PRK10762         84 IHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVI  163 (501)
T ss_pred             EEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            999999999999999998864322    1223344567889999999998889999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHH
Q psy7367         155 ILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  217 (251)
Q Consensus       155 llDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~  217 (251)
                      ||||||++||+.++..++++|++++ +|.|||++|||++++..+||++++|++|+++..|+++.
T Consensus       164 lLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~  227 (501)
T PRK10762        164 IMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVAD  227 (501)
T ss_pred             EEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCc
Confidence            9999999999999999999999985 58999999999999999999999999999999887653

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=1.5e-53  Score=372.28  Aligned_cols=218  Identities=22%  Similarity=0.348  Sum_probs=189.7

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEccee-----CCC-ChHH---
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD-----IRT-DMTT---   71 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~-----~~~-~~~~---   71 (251)
                      |+++|++++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|++     +.. ....   
T Consensus         7 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~   85 (258)
T PRK11701          7 LSVRGLTKLYGP-RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRR   85 (258)
T ss_pred             EEEeeeEEEcCC-ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHH
Confidence            578999999964 689999999999999999999999999999999999999999999999998     643 1222   


Q ss_pred             -hhcceEEEccCC--CCCCCCCHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHH
Q psy7367          72 -IRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQ-VPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMA  146 (251)
Q Consensus        72 -~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~a  146 (251)
                       .++.++|+||++  .+++.+|+.+|+.+...... .......+++.++++.+++. +..++++.+||||||||++||||
T Consensus        86 ~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lara  165 (258)
T PRK11701         86 LLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARN  165 (258)
T ss_pred             HhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHH
Confidence             245799999997  46777899999976543222 12233456788999999997 47789999999999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |+.+|++|||||||++||+.+++.+++.|+++. + |.|||++||+++++..+||++++|++|+++..|+++++.
T Consensus       166 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~  240 (258)
T PRK11701        166 LVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVL  240 (258)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence            999999999999999999999999999999974 3 899999999999999999999999999999999887654

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-53  Score=369.46  Aligned_cols=218  Identities=23%  Similarity=0.357  Sum_probs=190.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----eeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS-----SGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~-----~G~i~~~g~~~~~---~~~~~   72 (251)
                      ++++|++++|+ ++.+|+++||+|++|++++|+||||||||||+++|+|+++|+     +|+|+++|+++..   ....+
T Consensus         5 l~~~~l~~~~~-~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~   83 (251)
T PRK14249          5 IKIRGVNFFYH-KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNL   83 (251)
T ss_pred             EEEEEEEEEEC-CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHh
Confidence            57899999996 467999999999999999999999999999999999999997     6999999998742   22345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      ++.++|+||++.+++. |++||+.+....++.. .+...+.+.++++.+++.    +..++++.+||||||||++|||||
T Consensus        84 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral  162 (251)
T PRK14249         84 RKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVL  162 (251)
T ss_pred             hceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence            7889999999998875 9999999865544332 223345677788888864    457889999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      +.+|+++||||||+|||+.++..+.++|++++++.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus       163 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  235 (251)
T PRK14249        163 AIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFS  235 (251)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence            9999999999999999999999999999998768999999999999999999999999999999999876643

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=100.00  E-value=4.4e-54  Score=370.89  Aligned_cols=216  Identities=24%  Similarity=0.400  Sum_probs=184.1

Q ss_pred             CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++|++++|++ ++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ....+++.++|
T Consensus         1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (237)
T cd03252           1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV   80 (237)
T ss_pred             CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence            579999999963 3579999999999999999999999999999999999999999999999998753 33445678999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHH-----HHHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQ-----LEISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGS  151 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p  151 (251)
                      +||++.+++ .||.||+.+...  ........     ..+.++++.+  ++....++++.+|||||||||+|||||+.+|
T Consensus        81 ~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p  157 (237)
T cd03252          81 VLQENVLFN-RSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNP  157 (237)
T ss_pred             EcCCchhcc-chHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCC
Confidence            999998875 699999987432  11111111     1234455655  5666678899999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         152 RTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       152 ~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      +++||||||++||+.+++.+.+.|+++.+|+|||++|||++++. .||++++|++|+++..|+++.+..
T Consensus       158 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~  225 (237)
T cd03252         158 RILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSHDELLA  225 (237)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999999999999999999877899999999999996 599999999999999999876543

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-53  Score=370.02  Aligned_cols=216  Identities=25%  Similarity=0.401  Sum_probs=188.9

Q ss_pred             EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHHhh
Q psy7367           2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTTIR   73 (251)
Q Consensus         2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~~~   73 (251)
                      +++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+.+     |++|+|+++|+++..   ....++
T Consensus         7 ~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~   85 (251)
T PRK14244          7 SVKNLNLWYG-SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR   85 (251)
T ss_pred             EeeeEEEEEC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence            5789999996 4789999999999999999999999999999999999986     479999999998742   122456


Q ss_pred             cceEEEccCCCCCCCCCHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHcCCCc----ccCCCCCcCChhHHHHHHHHHHH
Q psy7367          74 RSLGVCPQYNALFDKLTVEEHMWFYSQLKQV--PKDLAQLEISNMIVDLGIPH----KRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        74 ~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      +.++|+||++.+++. |++||+.+....++.  ......+.+.++++.+++.+    ..++++.+||||||||++|||||
T Consensus        86 ~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral  164 (251)
T PRK14244         86 AKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAI  164 (251)
T ss_pred             hhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHH
Confidence            789999999988885 999999876443332  22334456788999999964    45778999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +.+|++|||||||+|||+.+++.+.+.|+++++++|||++||+++++..+|||+++|++|+++..|+++.+.
T Consensus       165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  236 (251)
T PRK14244        165 AVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF  236 (251)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence            999999999999999999999999999999877899999999999999999999999999999999887654

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-53  Score=369.44  Aligned_cols=217  Identities=25%  Similarity=0.380  Sum_probs=190.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCC--ChHHhh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRT--DMTTIR   73 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~--~~~~~~   73 (251)
                      ++++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|+++|.++..  ....++
T Consensus         4 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~   82 (249)
T PRK14253          4 FNIENLDLFYGE-NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR   82 (249)
T ss_pred             EEEeccEEEECC-eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHH
Confidence            478999999964 7899999999999999999999999999999999999986     59999999998742  234567


Q ss_pred             cceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          74 RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        74 ~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      +.++|+||++.+|+ .|+.||+.+.....+.. .....+++.++++.+++.    +..++++.+|||||||||+|||||+
T Consensus        83 ~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~  161 (249)
T PRK14253         83 IKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIA  161 (249)
T ss_pred             hheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHH
Confidence            78999999999887 79999998765443322 233345677888988874    4567889999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      .+|+++||||||+|||+.++..++++|++++++.|||++||+++++..+|||+++|++|+++..|+++.+.
T Consensus       162 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  232 (249)
T PRK14253        162 MEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF  232 (249)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            99999999999999999999999999999976799999999999999999999999999999999877653

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-53  Score=372.66  Aligned_cols=217  Identities=25%  Similarity=0.354  Sum_probs=191.5

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~~   72 (251)
                      |+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++..   ....+
T Consensus        21 l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~   99 (267)
T PRK14237         21 LSTKDLHVYYG-KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEM   99 (267)
T ss_pred             EEEeeEEEEEC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHH
Confidence            57899999996 4789999999999999999999999999999999999986     589999999998842   23345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      ++.|+|+||++.+++ .||+||+.+.....+. ......+++.++++.+++.    +..++++.+||+|||||++|||||
T Consensus       100 ~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral  178 (267)
T PRK14237        100 RKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAI  178 (267)
T ss_pred             hcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHH
Confidence            778999999998887 6999999886544332 2334456688899999984    457889999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +.+|++|||||||+|||+.++..+.++|++++++.|||++||+++++..+||++++|++|++++.|+++.+.
T Consensus       179 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  250 (267)
T PRK14237        179 AVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF  250 (267)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence            999999999999999999999999999999876899999999999999999999999999999999987663

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.8e-54  Score=407.57  Aligned_cols=216  Identities=23%  Similarity=0.392  Sum_probs=193.0

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CeeEEEEcceeCCCC-hH-Hhhcce
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV--SSGTAKIYNHDIRTD-MT-TIRRSL   76 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~~~-~~-~~~~~i   76 (251)
                      |+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|  ++|+|+++|+++... .. ..++.+
T Consensus         6 l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   84 (506)
T PRK13549          6 LEMKNITKTFG-GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGI   84 (506)
T ss_pred             EEEeeeEEEeC-CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCe
Confidence            57899999996 47899999999999999999999999999999999999986  899999999998542 22 235779


Q ss_pred             EEEccCCCCCCCCCHHHHHHHHHHhc--C-CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCE
Q psy7367          77 GVCPQYNALFDKLTVEEHMWFYSQLK--Q-VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRT  153 (251)
Q Consensus        77 ~~v~q~~~l~~~ltv~e~l~~~~~~~--~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~l  153 (251)
                      +|+||++.+++.+||+||+.++...+  + .......+++.++++.+++.+..++++.+|||||||||+|||||+.+|++
T Consensus        85 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l  164 (506)
T PRK13549         85 AIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARL  164 (506)
T ss_pred             EEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCE
Confidence            99999999999999999998865432  1 23334456789999999999888999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHH
Q psy7367         154 VILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  217 (251)
Q Consensus       154 lllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~  217 (251)
                      |||||||++||+.++..++++|.+++ +|.|||++|||++++..+||++++|++|+++..|+++.
T Consensus       165 llLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~  229 (506)
T PRK13549        165 LILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAG  229 (506)
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeeccccc
Confidence            99999999999999999999999985 58999999999999999999999999999999888653

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-53  Score=374.87  Aligned_cols=217  Identities=21%  Similarity=0.256  Sum_probs=190.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC--------eeEEEEcceeCCC-ChHH
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS--------SGTAKIYNHDIRT-DMTT   71 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~--------~G~i~~~g~~~~~-~~~~   71 (251)
                      |+++|++++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+++|+        +|+|.++|+++.. ....
T Consensus         2 l~~~nl~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~   80 (272)
T PRK13547          2 LTADHLHVARRH-RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR   80 (272)
T ss_pred             eEEEEEEEEECC-EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence            579999999964 78999999999999999999999999999999999999998        9999999998753 3344


Q ss_pred             hhcceEEEccCCCCCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHH
Q psy7367          72 IRRSLGVCPQYNALFDKLTVEEHMWFYSQLK----QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        72 ~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      .++.++|+||++.+++.+|+.||+.+.....    +....+..+.+.++++.+++.+..++++.+|||||||||+|||||
T Consensus        81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral  160 (272)
T PRK13547         81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVL  160 (272)
T ss_pred             HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence            5667999999987666789999998753211    111123345688999999999989999999999999999999999


Q ss_pred             c---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHH
Q psy7367         148 I---------GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  216 (251)
Q Consensus       148 ~---------~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~  216 (251)
                      +         .+|++|||||||++||+.+++.++++|+++. + |.|||++|||++++.++||++++|++|+++..|+++
T Consensus       161 ~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~  240 (272)
T PRK13547        161 AQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPA  240 (272)
T ss_pred             hccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHH
Confidence            9         5999999999999999999999999999984 4 899999999999999999999999999999999876


Q ss_pred             HH
Q psy7367         217 FL  218 (251)
Q Consensus       217 ~~  218 (251)
                      .+
T Consensus       241 ~~  242 (272)
T PRK13547        241 DV  242 (272)
T ss_pred             HH
Confidence            55

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=4.1e-55  Score=355.01  Aligned_cols=219  Identities=24%  Similarity=0.396  Sum_probs=201.7

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-----------C-
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-----------D-   68 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-----------~-   68 (251)
                      ++++|+.|+|| ...+|++|||+-.+|+++.|||.+||||||+||||+-|..|+.|.|.++|+.+..           . 
T Consensus         7 l~v~dlHK~~G-~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~   85 (256)
T COG4598           7 LEVEDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADK   85 (256)
T ss_pred             eehhHHHhhcc-cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCH
Confidence            56889999996 4889999999999999999999999999999999999999999999999998731           1 


Q ss_pred             --hHHhhcceEEEccCCCCCCCCCHHHHHHH-HHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHH
Q psy7367          69 --MTTIRRSLGVCPQYNALFDKLTVEEHMWF-YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAM  145 (251)
Q Consensus        69 --~~~~~~~i~~v~q~~~l~~~ltv~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~  145 (251)
                        ...+|.+.++|||+.+|+.+|||.||+.- +....+.++.++.++++.+|.++|+.+..+.+|..|||||+||++|||
T Consensus        86 ~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIAR  165 (256)
T COG4598          86 RQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIAR  165 (256)
T ss_pred             HHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHH
Confidence              12457789999999999999999999865 344567888889999999999999999999999999999999999999


Q ss_pred             HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         146 AFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       146 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      ||+.+|+++|+|||||+|||+..-++++.++++. +|+|.+++||.|.++...+.+++++++|.|-++|+|+.+..
T Consensus       166 aLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~  241 (256)
T COG4598         166 ALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFG  241 (256)
T ss_pred             HHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhc
Confidence            9999999999999999999999999999999996 59999999999999999999999999999999999987643

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=100.00  E-value=1.1e-53  Score=360.82  Aligned_cols=200  Identities=26%  Similarity=0.425  Sum_probs=178.6

Q ss_pred             EEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC--C---hHHhhcceE
Q psy7367           3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT--D---MTTIRRSLG   77 (251)
Q Consensus         3 i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~--~---~~~~~~~i~   77 (251)
                      ++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..  .   ....++.++
T Consensus         1 i~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~   79 (206)
T TIGR03608         1 LKNISKKFGD-KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG   79 (206)
T ss_pred             CcceEEEECC-EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence            5799999964 689999999999999999999999999999999999999999999999998642  1   123467899


Q ss_pred             EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367          78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD  157 (251)
Q Consensus        78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD  157 (251)
                      |++|++.+++.+|++||+.+.....+.......+++.++++.+++.+..++++.+||+|||||++|||||+.+|++||||
T Consensus        80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllD  159 (206)
T TIGR03608        80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILAD  159 (206)
T ss_pred             EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            99999999998999999998655444444455667899999999998899999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe
Q psy7367         158 EPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII  204 (251)
Q Consensus       158 EPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l  204 (251)
                      |||+|||+.+++.+.++|+++. +|.|||++||+++.+ .+||++++|
T Consensus       160 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~i~~l  206 (206)
T TIGR03608       160 EPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADRVIEL  206 (206)
T ss_pred             CCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcCEEEeC
Confidence            9999999999999999999985 589999999999976 579999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=100.00  E-value=1.6e-53  Score=366.61  Aligned_cols=217  Identities=25%  Similarity=0.420  Sum_probs=186.7

Q ss_pred             CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++|++++|++. +++++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ....+++.++|
T Consensus         1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (234)
T cd03251           1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL   80 (234)
T ss_pred             CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence            5799999999642 279999999999999999999999999999999999999999999999998753 33455678999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHH-----HHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL-----EISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGS  151 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p  151 (251)
                      +||++.+++ .|++||+.++....  ......+     .+.++++.+  ++.+..++++.+||+|||||++|||||+.+|
T Consensus        81 ~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p  157 (234)
T cd03251          81 VSQDVFLFN-DTVAENIAYGRPGA--TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDP  157 (234)
T ss_pred             eCCCCeecc-ccHHHHhhccCCCC--CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence            999998886 69999998754321  1111111     245666666  6777788899999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         152 RTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       152 ~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      +++||||||+|||+.+++.+.+.|+++.++.|||++||+++++.. ||++++|++|+++..++++++...
T Consensus       158 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~  226 (234)
T cd03251         158 PILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEELLAQ  226 (234)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHHHHHHc
Confidence            999999999999999999999999998778999999999999976 999999999999999988766443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.4e-53  Score=375.68  Aligned_cols=217  Identities=24%  Similarity=0.330  Sum_probs=189.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~~   72 (251)
                      |+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+     |++|+|.++|+++..   ....+
T Consensus        40 l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~  118 (286)
T PRK14275         40 VVAKNFSIYYGE-FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLL  118 (286)
T ss_pred             EEEeeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHh
Confidence            478999999964 679999999999999999999999999999999999864     499999999998742   12245


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      ++.++|+||++.+++. ||.||+.+.....+.. .....+++.++++.+++.    +..++++.+||||||||++|||||
T Consensus       119 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL  197 (286)
T PRK14275        119 RKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTL  197 (286)
T ss_pred             hhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHH
Confidence            6789999999998875 9999999865543332 233345678889999873    566889999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +.+|++|||||||+|||+.+++.+.++|++++++.|||++|||++++..+|||+++|++|+++..|++..+.
T Consensus       198 ~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~  269 (286)
T PRK14275        198 AVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF  269 (286)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999876789999999999999999999999999999999987654

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=100.00  E-value=2e-53  Score=364.59  Aligned_cols=211  Identities=24%  Similarity=0.416  Sum_probs=185.8

Q ss_pred             CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCeeEEEEcceeCCCChHHhhc
Q psy7367           1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP---VSSGTAKIYNHDIRTDMTTIRR   74 (251)
Q Consensus         1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~   74 (251)
                      +.++|++++|++.   +++|+|+||+|++||+++|+||||||||||+|+|+|+++   |++|+|+++|+++..  ..+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~--~~~~~   81 (226)
T cd03234           4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP--DQFQK   81 (226)
T ss_pred             ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh--HHhcc
Confidence            4689999999643   579999999999999999999999999999999999999   999999999998742  34577


Q ss_pred             ceEEEccCCCCCCCCCHHHHHHHHHHhcC---CChHHHHHHHHH-HHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccC
Q psy7367          75 SLGVCPQYNALFDKLTVEEHMWFYSQLKQ---VPKDLAQLEISN-MIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGG  150 (251)
Q Consensus        75 ~i~~v~q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~  150 (251)
                      .++|+||++.+++.+|+.||+.+......   ........++.+ +++.+++.+..++.+.+||+||+||++|||||+.+
T Consensus        82 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~  161 (226)
T cd03234          82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWD  161 (226)
T ss_pred             cEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhC
Confidence            89999999999999999999998654322   111222234555 89999999888999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCH-HHHHhhcCEEEEeeCCEEEeec
Q psy7367         151 SRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYM-DEADLLGDRIAIIAAGKLQCCG  213 (251)
Q Consensus       151 p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~-~~~~~~~d~i~~l~~G~i~~~g  213 (251)
                      |+++||||||+|||+.++..+.+++++++ ++.|||++||++ +++..+||++++|++|++++.|
T Consensus       162 p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g  226 (226)
T cd03234         162 PKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG  226 (226)
T ss_pred             CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence            99999999999999999999999999985 589999999999 6899999999999999998764

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.9e-53  Score=370.03  Aligned_cols=217  Identities=23%  Similarity=0.407  Sum_probs=190.2

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~---~~~~~   72 (251)
                      |+++|++++|+ ++.+|+++||+|++||+++|+|+||||||||+|+|+|+++|     ++|+|.++|+++..   ....+
T Consensus         8 l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~   86 (259)
T PRK14260          8 IKVKDLSFYYN-TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRL   86 (259)
T ss_pred             EEEEEEEEEEC-CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhh
Confidence            57899999996 46799999999999999999999999999999999999985     48999999998742   22345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ-VPKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      +++++|+||++.+|+ +|++||+.+....++ .+.....+.+.++++.+++.    +..++++.+||+|||||++|||||
T Consensus        87 ~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral  165 (259)
T PRK14260         87 RRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARAL  165 (259)
T ss_pred             hhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence            678999999999887 899999987654432 23334445678889999883    467889999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEee-----CCEEEeecCHHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIA-----AGKLQCCGSSVFLK  219 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~-----~G~i~~~g~~~~~~  219 (251)
                      +.+|+++||||||+|||+.++..++++|++++++.|||++||+++++..+||++++|+     +|+++..|++.++.
T Consensus       166 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~  242 (259)
T PRK14260        166 AIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIF  242 (259)
T ss_pred             hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHh
Confidence            9999999999999999999999999999998767999999999999999999999998     59999999987763

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.4e-54  Score=406.46  Aligned_cols=216  Identities=22%  Similarity=0.377  Sum_probs=192.4

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-hH-HhhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MT-TIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~-~~~~~i~~   78 (251)
                      |+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... .. ..+++++|
T Consensus         6 l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~   84 (510)
T PRK09700          6 ISMAGIGKSFG-PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGI   84 (510)
T ss_pred             EEEeeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEE
Confidence            57899999996 47899999999999999999999999999999999999999999999999998542 22 23467999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHH----hcCC---ChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQ----LKQV---PKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGS  151 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~----~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p  151 (251)
                      +||++.+++.+||+||+.+...    .++.   ...+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|
T Consensus        85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p  164 (510)
T PRK09700         85 IYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDA  164 (510)
T ss_pred             EeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCC
Confidence            9999999999999999987532    1121   22344567889999999998899999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHH
Q psy7367         152 RTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  217 (251)
Q Consensus       152 ~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~  217 (251)
                      ++|||||||+|||+.++..++++|++++ +|.|||++|||++++..+||++++|++|++++.|++++
T Consensus       165 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  231 (510)
T PRK09700        165 KVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD  231 (510)
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhh
Confidence            9999999999999999999999999985 58999999999999999999999999999999988754

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.4e-53  Score=368.25  Aligned_cols=217  Identities=24%  Similarity=0.358  Sum_probs=189.8

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP--V---SSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~--p---~~G~i~~~g~~~~~---~~~~~   72 (251)
                      |+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.+  |   ++|+|.++|+++..   .....
T Consensus         7 i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~   85 (253)
T PRK14261          7 LSTKNLNLWYG-EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVAL   85 (253)
T ss_pred             EEEeeeEEEEC-CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhh
Confidence            57899999996 4789999999999999999999999999999999999975  3   48999999998853   22345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      ++.++|+||++.+|+. ||+||+.+....++. .....++.+.++++.+++.    ...++++.+||+|||||++|||||
T Consensus        86 ~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral  164 (253)
T PRK14261         86 RRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTL  164 (253)
T ss_pred             hceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHH
Confidence            6789999999998874 999999987654432 2233445678889998874    346789999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +.+|+++||||||+|||+.+++.+.++|++++++.|||++||+++++..+||++++|++|+++..|+++.+.
T Consensus       165 ~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  236 (253)
T PRK14261        165 AVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF  236 (253)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence            999999999999999999999999999999876799999999999999999999999999999999987664

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.6e-53  Score=372.48  Aligned_cols=218  Identities=27%  Similarity=0.370  Sum_probs=191.4

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCCC--hHHhh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRTD--MTTIR   73 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~~--~~~~~   73 (251)
                      |+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|+++|.++...  ...++
T Consensus        22 l~i~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~  100 (276)
T PRK14271         22 MAAVNLTLGFA-GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFR  100 (276)
T ss_pred             EEEeeEEEEEC-CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHh
Confidence            47899999996 47899999999999999999999999999999999999985     799999999987532  23457


Q ss_pred             cceEEEccCCCCCCCCCHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCCc----ccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          74 RSLGVCPQYNALFDKLTVEEHMWFYSQLKQ-VPKDLAQLEISNMIVDLGIPH----KRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        74 ~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      +.++|+||++.+|+ +|++||+.+...... ....+....+.++++.+++..    ..++.+.+||||||||++|||||+
T Consensus       101 ~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~  179 (276)
T PRK14271        101 RRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLA  179 (276)
T ss_pred             hheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence            78999999999887 799999987654322 233444456778899999864    457889999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      .+|++|||||||++||+.+++.+.+.|++++++.|||++||+++++..+|||+++|++|+++..|+++.+.+
T Consensus       180 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  251 (276)
T PRK14271        180 VNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS  251 (276)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            999999999999999999999999999998666899999999999999999999999999999999876643

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.1e-53  Score=372.41  Aligned_cols=217  Identities=23%  Similarity=0.370  Sum_probs=188.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~~   72 (251)
                      |+++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++     |++|+|.++|+++..   ....+
T Consensus        25 l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~  103 (271)
T PRK14238         25 FDTQNLNLWYGE-DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEEL  103 (271)
T ss_pred             EEEeeeEEEECC-cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHH
Confidence            578999999964 679999999999999999999999999999999999987     699999999998742   23345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcC----CCcccCCCCCcCChhHHHHHHHHHHH
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIVDLG----IPHKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~----l~~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      ++.++|+||++.+|+ .|++||+.+.....+.. .......+.++++.++    +.+..++++.+||||||||++|||||
T Consensus       104 ~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL  182 (271)
T PRK14238        104 RTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCL  182 (271)
T ss_pred             hhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence            678999999999887 59999998865443322 2223445677787775    44566889999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +.+|++|||||||+|||+.++..+.++|+++.++.|||++|||++++..+||++++|++|+++..|++.++.
T Consensus       183 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~  254 (271)
T PRK14238        183 AIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF  254 (271)
T ss_pred             HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999876899999999999999999999999999999999987653

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=100.00  E-value=3e-53  Score=362.12  Aligned_cols=208  Identities=26%  Similarity=0.447  Sum_probs=185.4

Q ss_pred             CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-C---hHHhh
Q psy7367           1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-D---MTTIR   73 (251)
Q Consensus         1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~---~~~~~   73 (251)
                      ++++|+++.|+++   +.+|+++||++++|++++|+||||||||||+++|+|+++|++|+|+++|+++.. .   ....+
T Consensus         2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (220)
T TIGR02982         2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR   81 (220)
T ss_pred             EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence            5789999999632   579999999999999999999999999999999999999999999999998743 1   12356


Q ss_pred             cceEEEccCCCCCCCCCHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367          74 RSLGVCPQYNALFDKLTVEEHMWFYSQLKQ-VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR  152 (251)
Q Consensus        74 ~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~  152 (251)
                      +.++|+||++.+++.+|+.||+.+...... ....+..+++.++++.+++.+..++++.+||+|||||++|||||+.+|+
T Consensus        82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~  161 (220)
T TIGR02982        82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPK  161 (220)
T ss_pred             hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence            789999999999998999999998765442 3344455678999999999988999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEE
Q psy7367         153 TVILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKL  209 (251)
Q Consensus       153 llllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i  209 (251)
                      ++||||||+|||+.+++.++++|+++.  .++|||++||+++. ..+||++++|++|++
T Consensus       162 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~-~~~~d~v~~l~~g~~  219 (220)
T TIGR02982       162 LVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRI-LDVADRIVHMEDGKL  219 (220)
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhhCCEEEEEECCEE
Confidence            999999999999999999999999984  38999999999985 479999999999986

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.8e-53  Score=373.99  Aligned_cols=216  Identities=21%  Similarity=0.352  Sum_probs=189.5

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~~   72 (251)
                      |+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++     |++|+|+++|+++..   ....+
T Consensus        40 l~i~~l~~~~~~-~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~  118 (285)
T PRK14254         40 IEARDLNVFYGD-EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVAL  118 (285)
T ss_pred             EEEEEEEEEECC-EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhh
Confidence            478999999964 679999999999999999999999999999999999987     689999999998742   22345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      +++++|+||++.+|+. |+.||+.+.....+... ...+++.++++.+++.    +..++++.+||||||||++|||||+
T Consensus       119 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~  196 (285)
T PRK14254        119 RRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIA  196 (285)
T ss_pred             hccEEEEecCCccCcC-CHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence            6789999999988875 99999988765544332 3455788999999985    4568899999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEE-EeeCCEEEeecCHHHHH
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIA-IIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~  219 (251)
                      .+|++|||||||+|||+.+++.+.++|++++++.|||++|||++++..+|||++ +|++|+++..|++..+.
T Consensus       197 ~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~  268 (285)
T PRK14254        197 PDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF  268 (285)
T ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence            999999999999999999999999999998666899999999999999999975 67999999999876653

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=2.1e-53  Score=404.16  Aligned_cols=213  Identities=23%  Similarity=0.426  Sum_probs=191.8

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHh-hcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTI-RRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~-~~~i~~   78 (251)
                      |+++|++++|++ +.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.. ..... ++.++|
T Consensus        12 l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~   90 (510)
T PRK15439         12 LCARSISKQYSG-VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYL   90 (510)
T ss_pred             EEEEeEEEEeCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence            578999999964 779999999999999999999999999999999999999999999999998854 22222 357999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE  158 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE  158 (251)
                      +||++.+++.+||+||+.+....    ....++++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||
T Consensus        91 v~q~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDE  166 (510)
T PRK15439         91 VPQEPLLFPNLSVKENILFGLPK----RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDE  166 (510)
T ss_pred             EeccCccCCCCcHHHHhhccccc----chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence            99999999999999999885421    12344678899999999988999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         159 PTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       159 Pt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      ||+|||+.++..++++|++++ +|.|||++|||++++..+||++++|++|+++..|+++++
T Consensus       167 Pt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  227 (510)
T PRK15439        167 PTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL  227 (510)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence            999999999999999999985 589999999999999999999999999999999987644

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.6e-53  Score=410.89  Aligned_cols=219  Identities=22%  Similarity=0.350  Sum_probs=194.2

Q ss_pred             CEEEeEEEEeCC----------CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-h
Q psy7367           1 MAIQNLSKRFPN----------GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-M   69 (251)
Q Consensus         1 l~i~~l~~~y~~----------~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~   69 (251)
                      |+++||++.|+.          .+.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... .
T Consensus       314 L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~  393 (623)
T PRK10261        314 LQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSP  393 (623)
T ss_pred             EEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCH
Confidence            478999999952          14699999999999999999999999999999999999999999999999988532 1


Q ss_pred             ---HHhhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHH
Q psy7367          70 ---TTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLS  142 (251)
Q Consensus        70 ---~~~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~  142 (251)
                         ..++++|+|+||++  .+++.+||.||+.+....++. ...+..+++.++++.++|. ...++++.+|||||||||+
T Consensus       394 ~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~  473 (623)
T PRK10261        394 GKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRIC  473 (623)
T ss_pred             HHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHH
Confidence               23467899999997  588899999999886654443 2344556789999999996 6789999999999999999


Q ss_pred             HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         143 VAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       143 ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |||||+.+|++|||||||++||+.++..++++|++++ + |.|||++|||++++..+|||+++|++|++++.|+++++.
T Consensus       474 iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~  552 (623)
T PRK10261        474 IARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVF  552 (623)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence            9999999999999999999999999999999999984 4 899999999999999999999999999999999987653

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.7e-53  Score=370.44  Aligned_cols=217  Identities=26%  Similarity=0.392  Sum_probs=190.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~~   72 (251)
                      ++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|+++|.++..   ....+
T Consensus        26 l~~~nl~~~~~~-~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~  104 (272)
T PRK14236         26 LEVRNLNLFYGD-KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAEL  104 (272)
T ss_pred             EEEEEEEEEECC-eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHH
Confidence            478999999964 679999999999999999999999999999999999987     489999999998853   22345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      ++.++|+||++.+|+. |++||+.+.....+. ......+++.++++.+++.    +..++++.+||||||||++|||||
T Consensus       105 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral  183 (272)
T PRK14236        105 RRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAI  183 (272)
T ss_pred             hccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHH
Confidence            7789999999998885 999999876544432 2223345688899999985    356788999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +.+|+++||||||+|||+.++..++++|++++++.|||++||+++++.++||++++|++|+++..|+++++.
T Consensus       184 ~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  255 (272)
T PRK14236        184 AIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLF  255 (272)
T ss_pred             HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHh
Confidence            999999999999999999999999999999876899999999999999999999999999999999877653

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8e-53  Score=366.28  Aligned_cols=217  Identities=24%  Similarity=0.397  Sum_probs=188.2

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP--V---SSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~--p---~~G~i~~~g~~~~~---~~~~~   72 (251)
                      |+++|++++|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+.+  |   ++|+|+++|+++..   ....+
T Consensus         6 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~   84 (252)
T PRK14255          6 ITSSDVHLFYGK-FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQL   84 (252)
T ss_pred             EEEEeEEEEECC-eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHh
Confidence            478999999964 789999999999999999999999999999999999875  5   59999999998742   22345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      ++.++|+||++.+++ .|++||+.+.....+.. .....+++.++++.+++.    +..++++.+||+|||||++|||||
T Consensus        85 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral  163 (252)
T PRK14255         85 RKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVL  163 (252)
T ss_pred             cCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHH
Confidence            678999999999887 69999998865544332 222344567788888763    456789999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +.+|+++||||||+|||+.+++.+.++|++++++.|||++||+++++.++||++++|++|+++..|++....
T Consensus       164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  235 (252)
T PRK14255        164 AVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF  235 (252)
T ss_pred             hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            999999999999999999999999999999866789999999999999999999999999999999886653

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=100.00  E-value=2.9e-53  Score=363.80  Aligned_cols=216  Identities=27%  Similarity=0.369  Sum_probs=181.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      |+++|++++|++.+.+++++||+|++|++++|+|||||||||||++|+|+++|++|+|+++|.++.. ....+++.++|+
T Consensus         3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   82 (229)
T cd03254           3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVV   82 (229)
T ss_pred             EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEe
Confidence            5789999999643569999999999999999999999999999999999999999999999998753 334567789999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHH-----HHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL-----EISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR  152 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~  152 (251)
                      ||++.+++. |++||+.++....  ......+     .+.++++.+  ++....++++.+||+||||||+|||||+.+|+
T Consensus        83 ~q~~~~~~~-tv~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~  159 (229)
T cd03254          83 LQDTFLFSG-TIMENIRLGRPNA--TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK  159 (229)
T ss_pred             cCCchhhhh-HHHHHHhccCCCC--CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            999988875 9999998753221  1111111     123344444  55556667789999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         153 TVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       153 llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      ++||||||+|||+.+++.++++|.+++++.|||++||+++++. .||++++|++|+++..++.+.+..
T Consensus       160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~~~~~~~~~~  226 (229)
T cd03254         160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK-NADKILVLDDGKIIEEGTHDELLA  226 (229)
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh-hCCEEEEEeCCeEEEeCCHHHHHh
Confidence            9999999999999999999999999867899999999999996 499999999999999888765543

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=100.00  E-value=7.3e-53  Score=367.31  Aligned_cols=215  Identities=21%  Similarity=0.340  Sum_probs=187.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC----CeeEEEEcceeCCCChHHhhcce
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV----SSGTAKIYNHDIRTDMTTIRRSL   76 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~~~i   76 (251)
                      |+++|++++| + +++|+++||+|++||+++|+||||||||||+++|+|+++|    ++|+|+++|+++.. ....++.+
T Consensus         5 l~~~~l~~~~-~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~-~~~~~~~i   81 (254)
T PRK10418          5 IELRNIALQA-A-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP-CALRGRKI   81 (254)
T ss_pred             EEEeCeEEEe-c-cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc-cccccceE
Confidence            5789999999 4 5799999999999999999999999999999999999999    99999999998852 22234679


Q ss_pred             EEEccCCC--CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc---ccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367          77 GVCPQYNA--LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH---KRTSLANTLSGGMQRKLSVAMAFIGGS  151 (251)
Q Consensus        77 ~~v~q~~~--l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgG~kqrv~ia~al~~~p  151 (251)
                      +|+||++.  +.+.+|+.+++.+.....+...  ..+++.++++.+++.+   ..++++.+||||||||++|||||+.+|
T Consensus        82 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p  159 (254)
T PRK10418         82 ATIMQNPRSAFNPLHTMHTHARETCLALGKPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEA  159 (254)
T ss_pred             EEEecCCccccCccccHHHHHHHHHHHcCCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCC
Confidence            99999974  4456799999877544333322  2356889999999986   568899999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         152 RTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       152 ~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      ++|||||||+|||+.+++.++++|+++. + |.|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus       160 ~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  230 (254)
T PRK10418        160 PFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN  230 (254)
T ss_pred             CEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence            9999999999999999999999999984 4 8999999999999999999999999999999999876643

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.5e-53  Score=369.34  Aligned_cols=217  Identities=24%  Similarity=0.338  Sum_probs=188.4

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~~   72 (251)
                      |+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++     |++|+|+++|+++..   ....+
T Consensus        11 l~i~~v~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~   89 (264)
T PRK14243         11 LRTENLNVYYGS-FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEV   89 (264)
T ss_pred             EEEeeeEEEECC-EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHH
Confidence            478999999964 689999999999999999999999999999999999976     489999999998742   23345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      ++.++|+||++.+++ .|+.||+.+.....+.. ....+++.++++.+++.    +..++++.+||||||||++|||||+
T Consensus        90 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~  167 (264)
T PRK14243         90 RRRIGMVFQKPNPFP-KSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIA  167 (264)
T ss_pred             hhhEEEEccCCcccc-ccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence            778999999998887 49999998865443322 22334567778888874    3567889999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEee---------CCEEEeecCHHHHH
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIA---------AGKLQCCGSSVFLK  219 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~---------~G~i~~~g~~~~~~  219 (251)
                      .+|++|||||||+|||+.++..++++|.++.++.|||++||+++++.++|||+++|+         +|++++.|+++++.
T Consensus       168 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~  247 (264)
T PRK14243        168 VQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIF  247 (264)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence            999999999999999999999999999998767899999999999999999999998         89999999987764


Q ss_pred             h
Q psy7367         220 N  220 (251)
Q Consensus       220 ~  220 (251)
                      .
T Consensus       248 ~  248 (264)
T PRK14243        248 N  248 (264)
T ss_pred             h
Confidence            3

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-52  Score=367.02  Aligned_cols=218  Identities=23%  Similarity=0.407  Sum_probs=190.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----eeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS-----SGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~-----~G~i~~~g~~~~~---~~~~~   72 (251)
                      |+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|+     +|+|.++|+++..   ....+
T Consensus         8 l~~~nl~~~~~~-~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~   86 (261)
T PRK14258          8 IKVNNLSFYYDT-QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRL   86 (261)
T ss_pred             EEEeeEEEEeCC-eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHh
Confidence            578999999964 67999999999999999999999999999999999999985     8999999998732   22345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      ++.++|+||++.+++ +|++||+.+.....+. +..+..+++.++++.+++.    +..++++.+||||||||++|||||
T Consensus        87 ~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral  165 (261)
T PRK14258         87 RRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARAL  165 (261)
T ss_pred             hccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence            678999999998887 8999999886544332 2333345678899999874    356889999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeC-----CEEEeecCHHHHHh
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAA-----GKLQCCGSSVFLKN  220 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~-----G~i~~~g~~~~~~~  220 (251)
                      +.+|++|||||||+|||+.++..++++|++++  ++.|||++|||++++.++|||+++|++     |+++..|+++++..
T Consensus       166 ~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~  245 (261)
T PRK14258        166 AVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFN  245 (261)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHHHh
Confidence            99999999999999999999999999999974  489999999999999999999999999     99999999887643

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=100.00  E-value=2.4e-53  Score=362.26  Aligned_cols=205  Identities=27%  Similarity=0.412  Sum_probs=177.3

Q ss_pred             CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++|++++|+++ +.+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|+++|+++.. ....+++.++|
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   82 (220)
T cd03245           3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY   82 (220)
T ss_pred             EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence            5789999999632 569999999999999999999999999999999999999999999999998743 23345678999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCC-----------CcCChhHHHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLA-----------NTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~kqrv~ia~al  147 (251)
                      +||++.+++ .|+.||+.++...  ..    .+++.++++.+++.+..++.+           .+||||||||++|||||
T Consensus        83 ~~q~~~~~~-~tv~e~l~~~~~~--~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al  155 (220)
T cd03245          83 VPQDVTLFY-GTLRDNITLGAPL--AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARAL  155 (220)
T ss_pred             eCCCCcccc-chHHHHhhcCCCC--CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHH
Confidence            999998886 6999999774321  11    234567788888877666544           69999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  213 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g  213 (251)
                      +.+|++|||||||+|||+.++..++++|++++++.|||++|||++++ ++||++++|++|+++..|
T Consensus       156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~~  220 (220)
T cd03245         156 LNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVADG  220 (220)
T ss_pred             hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEeecC
Confidence            99999999999999999999999999999986568999999999987 699999999999997653

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=100.00  E-value=1e-52  Score=369.28  Aligned_cols=219  Identities=20%  Similarity=0.277  Sum_probs=192.2

Q ss_pred             CEEEeEEEEeCC--------CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-h--
Q psy7367           1 MAIQNLSKRFPN--------GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-M--   69 (251)
Q Consensus         1 l~i~~l~~~y~~--------~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~--   69 (251)
                      |+++||+++|++        ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .  
T Consensus         4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~   83 (268)
T PRK10419          4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ   83 (268)
T ss_pred             EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence            478999999962        36799999999999999999999999999999999999999999999999987531 1  


Q ss_pred             -HHhhcceEEEccCC--CCCCCCCHHHHHHHHHHh-cCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHH
Q psy7367          70 -TTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQL-KQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVA  144 (251)
Q Consensus        70 -~~~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia  144 (251)
                       ..+++.++|+||++  .+++..|+.+|+.+.... ..........++.++++.+++. ...++++.+||+|||||++||
T Consensus        84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~la  163 (268)
T PRK10419         84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLA  163 (268)
T ss_pred             HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHH
Confidence             23567899999997  466778999999765432 2333444455789999999997 578899999999999999999


Q ss_pred             HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         145 MAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       145 ~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |||+.+|++|||||||+|||+.++..+.++|+++. + +.|||++||+++++..+||++++|++|+++..|+++++.
T Consensus       164 ral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~  240 (268)
T PRK10419        164 RALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKL  240 (268)
T ss_pred             HHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhcc
Confidence            99999999999999999999999999999999985 4 899999999999999999999999999999999887654

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=3.7e-53  Score=395.39  Aligned_cols=221  Identities=24%  Similarity=0.401  Sum_probs=197.4

Q ss_pred             CEEEeEEEEeCC------C----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCC--C-
Q psy7367           1 MAIQNLSKRFPN------G----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR--T-   67 (251)
Q Consensus         1 l~i~~l~~~y~~------~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~--~-   67 (251)
                      ++++||+|.|..      +    ..+++||||++.+||++||+|+||||||||.|+|+|+++|++|+|.++|.+..  . 
T Consensus       281 l~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~  360 (539)
T COG1123         281 LSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGG  360 (539)
T ss_pred             eEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccc
Confidence            469999999962      1    36899999999999999999999999999999999999999999999998732  1 


Q ss_pred             ChHHhhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHH
Q psy7367          68 DMTTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSV  143 (251)
Q Consensus        68 ~~~~~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~i  143 (251)
                      .....++++-++||+|  .|.|.+||.+++...+.+++.. ..+.++++.++++.++|.. .++++|++||||||||++|
T Consensus       361 ~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaI  440 (539)
T COG1123         361 ELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAI  440 (539)
T ss_pred             hhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHH
Confidence            2334567889999987  7899999999999988765432 4555667999999999986 7899999999999999999


Q ss_pred             HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         144 AMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       144 a~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      ||||+.+|++|++|||||+||+..+.+++++|++++ + |.|.|+||||+..+..+||||++|++|+|++.|+.+.+.+.
T Consensus       441 ARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~  520 (539)
T COG1123         441 ARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN  520 (539)
T ss_pred             HHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcC
Confidence            999999999999999999999999999999999996 4 99999999999999999999999999999999988776554

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=5.1e-53  Score=356.96  Aligned_cols=200  Identities=23%  Similarity=0.300  Sum_probs=180.4

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.......+++++|++
T Consensus         2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~   80 (204)
T PRK13538          2 LEARNLACERDE-RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG   80 (204)
T ss_pred             eEEEEEEEEECC-EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence            579999999964 7899999999999999999999999999999999999999999999999988543345567899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++.+|+.||+.++...++.   ...++++++++.+++.+..++++.+||||||||++|||||+.+|+++||||||
T Consensus        81 ~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt  157 (204)
T PRK13538         81 HQPGIKTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPF  157 (204)
T ss_pred             CccccCcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            999999999999999987654432   22356889999999998889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe
Q psy7367         161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII  204 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l  204 (251)
                      ++||+.+++.++++|++++ ++.|||++|||++++....+|++++
T Consensus       158 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~  202 (204)
T PRK13538        158 TAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL  202 (204)
T ss_pred             ccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence            9999999999999999985 5899999999999999877888776

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-52  Score=365.57  Aligned_cols=218  Identities=22%  Similarity=0.353  Sum_probs=190.8

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcc------eeCCC-ChHHhh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN------HDIRT-DMTTIR   73 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g------~~~~~-~~~~~~   73 (251)
                      ++++|++++|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|      +++.. ....++
T Consensus        11 i~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~   89 (257)
T PRK14246         11 FNISRLYLYIN-DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLR   89 (257)
T ss_pred             eeeeeEEEecC-CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHh
Confidence            47899999996 47899999999999999999999999999999999999999997776665      44432 233567


Q ss_pred             cceEEEccCCCCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          74 RSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        74 ~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      +.++|+||++.+++.+|++||+.+.....+. ...+..+++.++++.+++.    +..++++..||+|||||++|||||+
T Consensus        90 ~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~  169 (257)
T PRK14246         90 KEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALA  169 (257)
T ss_pred             cceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence            8899999999999989999999987543332 2334456788999999996    3567899999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      .+|+++||||||+|||+.++..+.++|.+++++.|||++||+++++..+||++++|++|+++..|+++++.
T Consensus       170 ~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~  240 (257)
T PRK14246        170 LKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF  240 (257)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            99999999999999999999999999999876799999999999999999999999999999999887654

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=100.00  E-value=1.5e-52  Score=364.83  Aligned_cols=218  Identities=22%  Similarity=0.359  Sum_probs=187.0

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEccee-----CCC-ChHH---
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD-----IRT-DMTT---   71 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~-----~~~-~~~~---   71 (251)
                      |+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|++     +.. ....   
T Consensus         4 l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   82 (253)
T TIGR02323         4 LQVSGLSKSYGG-GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRR   82 (253)
T ss_pred             EEEeeeEEEeCC-ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHH
Confidence            578999999964 679999999999999999999999999999999999999999999999976     532 2211   


Q ss_pred             -hhcceEEEccCCC--CCCCCCHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHH
Q psy7367          72 -IRRSLGVCPQYNA--LFDKLTVEEHMWFYSQLKQ-VPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMA  146 (251)
Q Consensus        72 -~~~~i~~v~q~~~--l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~a  146 (251)
                       +++.++|+||++.  +++.+|+.+|+.+...... .......+.+.++++.+++. ...++++.+|||||||||+||||
T Consensus        83 ~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lara  162 (253)
T TIGR02323        83 LMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARN  162 (253)
T ss_pred             hhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHH
Confidence             2457999999974  4556789999976432111 11223345788999999997 57889999999999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |+.+|++|||||||++||+.+++.++++|.++. + |.|||++||+++++..+||++++|++|+++..|+++.+.
T Consensus       163 l~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~  237 (253)
T TIGR02323       163 LVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVL  237 (253)
T ss_pred             HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHh
Confidence            999999999999999999999999999999874 4 899999999999999999999999999999999877654

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=100.00  E-value=8e-53  Score=363.22  Aligned_cols=216  Identities=26%  Similarity=0.424  Sum_probs=182.1

Q ss_pred             CEEEeEEEEeCC--CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367           1 MAIQNLSKRFPN--GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~--~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~   77 (251)
                      ++++|++++|++  ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. ....+++.++
T Consensus         1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   80 (238)
T cd03249           1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG   80 (238)
T ss_pred             CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence            589999999963  2469999999999999999999999999999999999999999999999998743 2334567899


Q ss_pred             EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHH-----HHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccC
Q psy7367          78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL-----EISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGG  150 (251)
Q Consensus        78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~  150 (251)
                      |+||++.+++ .|++||+.+.....  .......     .+.++++.+  ++....++++.+|||||||||+|||||+.+
T Consensus        81 ~~~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~  157 (238)
T cd03249          81 LVSQEPVLFD-GTIAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRN  157 (238)
T ss_pred             EECCchhhhh-hhHHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcC
Confidence            9999998886 69999998753221  1111111     123334444  566667788999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         151 SRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       151 p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      |+++||||||+|||+.+++.+++.|+++++|+|||++||+++++. +||++++|++|++++.++.+.+..
T Consensus       158 p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~  226 (238)
T cd03249         158 PKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHDELMA  226 (238)
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCCHHHHhh
Confidence            999999999999999999999999998877899999999999997 899999999999999998766543

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-52  Score=368.44  Aligned_cols=216  Identities=24%  Similarity=0.350  Sum_probs=187.5

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~---~~~~~   72 (251)
                      |+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++..   ....+
T Consensus        21 l~~~nl~~~~~~-~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~   99 (274)
T PRK14265         21 FEVEGVKVFYGG-FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKL   99 (274)
T ss_pred             EEEeeEEEEeCC-eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHH
Confidence            478999999964 6799999999999999999999999999999999999863     69999999998742   22345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      +++|+|+||++.+++. |+.||+.+.....+.. ....+.+.++++.+++.    +..++++.+|||||||||+|||||+
T Consensus       100 ~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~  177 (274)
T PRK14265        100 RRQVGMVFQRPNPFPK-SIYENIAFAPRANGYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIA  177 (274)
T ss_pred             hhcEEEEccCCccccc-cHHHHHHhHHHhcCch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence            6789999999988874 9999998865433322 12234567788888863    4567899999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEee---------CCEEEeecCHHHHH
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIA---------AGKLQCCGSSVFLK  219 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~---------~G~i~~~g~~~~~~  219 (251)
                      .+|++|||||||+|||+.++..+.++|.+++++.|||++|||++++.++|||+++|+         +|+++..|+++++.
T Consensus       178 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~  257 (274)
T PRK14265        178 MKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF  257 (274)
T ss_pred             hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence            999999999999999999999999999998767999999999999999999999997         89999999987664

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=1e-52  Score=400.24  Aligned_cols=218  Identities=23%  Similarity=0.351  Sum_probs=191.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCeeEEEEc-----------------
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML--PVSSGTAKIY-----------------   61 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~--~p~~G~i~~~-----------------   61 (251)
                      |+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+|+|+|++  +|++|+|+++                 
T Consensus         1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g   79 (520)
T TIGR03269         1 IEVKNLTKKFD-GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG   79 (520)
T ss_pred             CEEEEEEEEEC-CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence            68999999996 468999999999999999999999999999999999997  7999999997                 


Q ss_pred             ------ceeCC-------C-C---hHHhhcceEEEccC-CCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC
Q psy7367          62 ------NHDIR-------T-D---MTTIRRSLGVCPQY-NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP  123 (251)
Q Consensus        62 ------g~~~~-------~-~---~~~~~~~i~~v~q~-~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~  123 (251)
                            |.++.       . .   ...+++.++|+||+ +.+++.+|++||+.+.....+.+..+..+++.++++.++|.
T Consensus        80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~  159 (520)
T TIGR03269        80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS  159 (520)
T ss_pred             cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence                  22221       0 0   12345689999997 67888899999999876555555555567889999999999


Q ss_pred             cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhh-hC-CCeEEEEeCCHHHHHhhcCEE
Q psy7367         124 HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KK-GRTVILTTHYMDEADLLGDRI  201 (251)
Q Consensus       124 ~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l-~~-g~tiii~tHd~~~~~~~~d~i  201 (251)
                      +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.++++|+++ ++ |.|||+||||++.+..+||++
T Consensus       160 ~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i  239 (520)
T TIGR03269       160 HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKA  239 (520)
T ss_pred             hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEE
Confidence            8889999999999999999999999999999999999999999999999999998 44 899999999999999999999


Q ss_pred             EEeeCCEEEeecCHHHHH
Q psy7367         202 AIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       202 ~~l~~G~i~~~g~~~~~~  219 (251)
                      ++|++|+++..|+++.+.
T Consensus       240 ~~l~~G~i~~~g~~~~~~  257 (520)
T TIGR03269       240 IWLENGEIKEEGTPDEVV  257 (520)
T ss_pred             EEEeCCEEeeecCHHHHH
Confidence            999999999988876543

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=100.00  E-value=8.6e-53  Score=360.74  Aligned_cols=209  Identities=21%  Similarity=0.313  Sum_probs=181.7

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      |+++|++++|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+++.++|+
T Consensus         8 i~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   86 (225)
T PRK10247          8 LQLQNVGYLAG-DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYC   86 (225)
T ss_pred             EEEeccEEeeC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEE
Confidence            57899999996 4789999999999999999999999999999999999999999999999998753 333456789999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE  158 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE  158 (251)
                      ||++.+++ .|++||+.+....++...  ..+++.++++.+++. ...++++.+||+||+||++|||||+.+|+++||||
T Consensus        87 ~q~~~l~~-~tv~enl~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  163 (225)
T PRK10247         87 AQTPTLFG-DTVYDNLIFPWQIRNQQP--DPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDE  163 (225)
T ss_pred             eccccccc-ccHHHHHHhHHhhcCCCh--HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            99999887 499999988654433221  234578899999996 57889999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEee-CCEEEeecC
Q psy7367         159 PTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIA-AGKLQCCGS  214 (251)
Q Consensus       159 Pt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~-~G~i~~~g~  214 (251)
                      ||+|||+.+++.+.++|.++. + |.|||++||+++++. .||++++|+ ++..+.+|+
T Consensus       164 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~~  221 (225)
T PRK10247        164 ITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQEAR  221 (225)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHhhhh
Confidence            999999999999999999984 3 899999999999996 699999995 455555554

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.5e-53  Score=398.22  Aligned_cols=214  Identities=25%  Similarity=0.380  Sum_probs=190.7

Q ss_pred             EEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC--hHHhhcceEEEc
Q psy7367           3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD--MTTIRRSLGVCP   80 (251)
Q Consensus         3 i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~~~i~~v~   80 (251)
                      ++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...  ...+++.++|+|
T Consensus         1 ~~nl~~~~~~-~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~   79 (491)
T PRK10982          1 MSNISKSFPG-VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH   79 (491)
T ss_pred             CCceEEEeCC-EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence            4799999964 7899999999999999999999999999999999999999999999999988532  233467899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHH-hcC--CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367          81 QYNALFDKLTVEEHMWFYSQ-LKQ--VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD  157 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD  157 (251)
                      |++.+++.+||+||+.+... ..+  ....+..+++.++++.+++....++++.+|||||||||+|||||+.+|++||||
T Consensus        80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLD  159 (491)
T PRK10982         80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD  159 (491)
T ss_pred             cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence            99999999999999987532 112  123344567889999999998889999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHH
Q psy7367         158 EPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  217 (251)
Q Consensus       158 EPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~  217 (251)
                      |||+|||+.+++.++++|++++ +|.|||++|||++++..+||++++|++|+++..|+++.
T Consensus       160 EPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  220 (491)
T PRK10982        160 EPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAG  220 (491)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhh
Confidence            9999999999999999999985 58999999999999999999999999999999988654

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3e-52  Score=362.26  Aligned_cols=217  Identities=23%  Similarity=0.368  Sum_probs=190.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~~   72 (251)
                      ++++||++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+     |++|+|+++|+++..   .....
T Consensus         4 l~~~~v~~~~~~-~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~   82 (250)
T PRK14266          4 IEVENLNTYFDD-AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL   82 (250)
T ss_pred             EEEEeEEEEeCC-eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence            478999999964 679999999999999999999999999999999999864     489999999998753   23355


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      +++++|+||++.+|+. |+.||+.+.....+. ......+++.++++.+++.    ...++++.+||+|||||++|||||
T Consensus        83 ~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral  161 (250)
T PRK14266         83 RKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTI  161 (250)
T ss_pred             hhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence            7789999999998875 999999876543332 2233456788899999884    346788999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +.+|++|||||||+|||+.++..+.++|++++++.|||++||+++++..+||++++|++|++++.|+++.+.
T Consensus       162 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~  233 (250)
T PRK14266        162 AVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF  233 (250)
T ss_pred             HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence            999999999999999999999999999999877899999999999999999999999999999999987663

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.2e-52  Score=364.14  Aligned_cols=216  Identities=26%  Similarity=0.367  Sum_probs=189.5

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~---~~~~~   72 (251)
                      +.+++++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|+++|+++..   ....+
T Consensus         9 ~~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~   87 (261)
T PRK14263          9 MDCKLDKIFYG-NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVV   87 (261)
T ss_pred             EEEEeEEEEeC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhh
Confidence            46889999996 47899999999999999999999999999999999999986     79999999998742   22345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc----ccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH----KRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      ++.++|+||++.+| .+|+.||+.+.....+. ..+..+++.++++.+++.+    ..++++.+||+||+||++|||||+
T Consensus        88 ~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~  165 (261)
T PRK14263         88 RRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRY-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIA  165 (261)
T ss_pred             hhceEEEecCCccc-cccHHHHHHHHHhhcCc-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHH
Confidence            67899999999888 58999999987654432 2234457889999999854    346788999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEee--------CCEEEeecCHHHHH
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIA--------AGKLQCCGSSVFLK  219 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~--------~G~i~~~g~~~~~~  219 (251)
                      .+|++|||||||+|||+.++..++++|++++++.|||++||+++++..+|||+++|+        +|++++.|+++++.
T Consensus       166 ~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~  244 (261)
T PRK14263        166 TEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF  244 (261)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence            999999999999999999999999999998768999999999999999999999996        89999999987664

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=100.00  E-value=1.5e-52  Score=360.18  Aligned_cols=203  Identities=22%  Similarity=0.331  Sum_probs=179.1

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC----CeeEEEEcceeCCCChHHhhcceEEEccCCC--CCCCC
Q psy7367          16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV----SSGTAKIYNHDIRTDMTTIRRSLGVCPQYNA--LFDKL   89 (251)
Q Consensus        16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~--l~~~l   89 (251)
                      +++|+||+|++|++++|+||||||||||+|+|+|+++|    ++|+|+++|+++... ...++.++|+||++.  +++.+
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~-~~~~~~i~~~~q~~~~~~~~~~   79 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL-SIRGRHIATIMQNPRTAFNPLF   79 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh-hhhhheeEEEecCchhhcCccc
Confidence            57999999999999999999999999999999999999    899999999987532 222358999999984  55678


Q ss_pred             CHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC---cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q psy7367          90 TVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP---HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY  166 (251)
Q Consensus        90 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~  166 (251)
                      |+.+|+.+.....+.......+++.++++.+++.   +..++++.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus        80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~  159 (230)
T TIGR02770        80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV  159 (230)
T ss_pred             CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence            9999998765443333334456789999999998   5678899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         167 SRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       167 ~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      ++..+.++|++++ + |+|||++||+++++..+||++++|++|+++..|+++++.
T Consensus       160 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  214 (230)
T TIGR02770       160 NQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIF  214 (230)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            9999999999985 3 899999999999999999999999999999999987664

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-52  Score=397.84  Aligned_cols=213  Identities=23%  Similarity=0.399  Sum_probs=190.3

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC--hHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD--MTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~~~i~~   78 (251)
                      ++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...  ...++++|+|
T Consensus         5 l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~   83 (501)
T PRK11288          5 LSFDGIGKTFP-GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAI   83 (501)
T ss_pred             EEEeeeEEEEC-CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEE
Confidence            57899999996 46799999999999999999999999999999999999999999999999988532  2345678999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHH--hcC-CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQ--LKQ-VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI  155 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~--~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll  155 (251)
                      +||++.+++.+||.||+.++..  ..+ ....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||
T Consensus        84 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lll  163 (501)
T PRK11288         84 IYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIA  163 (501)
T ss_pred             EEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence            9999999999999999988542  112 2334445678899999999988899999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367         156 LDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  214 (251)
Q Consensus       156 lDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~  214 (251)
                      |||||++||+.+++.++++|++++ +|.|||++|||++++..+|||+++|++|+++..++
T Consensus       164 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~  223 (501)
T PRK11288        164 FDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD  223 (501)
T ss_pred             EcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence            999999999999999999999985 58999999999999999999999999999987664

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-52  Score=368.55  Aligned_cols=215  Identities=21%  Similarity=0.363  Sum_probs=183.8

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++++|++++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..  ...++.++|+|
T Consensus         7 l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~--~~~~~~i~~v~   84 (272)
T PRK15056          7 IVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ--ALQKNLVAYVP   84 (272)
T ss_pred             EEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH--hhccceEEEec
Confidence            5789999999534679999999999999999999999999999999999999999999999998742  11234699999


Q ss_pred             cCCCCC--CCCCHHHHHHHHHH----hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEE
Q psy7367          81 QYNALF--DKLTVEEHMWFYSQ----LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTV  154 (251)
Q Consensus        81 q~~~l~--~~ltv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ll  154 (251)
                      |++.+.  ...++++++.+...    ..........+++.++++.+++.+..++++.+||||||||++|||||+.+|++|
T Consensus        85 q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~ll  164 (272)
T PRK15056         85 QSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVI  164 (272)
T ss_pred             cccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            998652  23478888865321    111122233456788999999998899999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         155 ILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       155 llDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      ||||||+|||+.+++.+.++|++++ +|.|||++|||++++..+||+++++ +|+++..|+++++
T Consensus       165 llDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~  228 (272)
T PRK15056        165 LLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT  228 (272)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence            9999999999999999999999985 5899999999999999999999877 8999999988764

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.2e-53  Score=342.22  Aligned_cols=211  Identities=25%  Similarity=0.382  Sum_probs=191.4

Q ss_pred             CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC----hHHhh
Q psy7367           1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD----MTTIR   73 (251)
Q Consensus         1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~----~~~~~   73 (251)
                      |+++++++..+.+   ..||++|+|.|++||-++|+|||||||||||-+++|+..|++|+|++.|+++..-    ...+|
T Consensus         7 i~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R   86 (228)
T COG4181           7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALR   86 (228)
T ss_pred             eehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhh
Confidence            4677888877532   4699999999999999999999999999999999999999999999999998642    22333


Q ss_pred             -cceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367          74 -RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR  152 (251)
Q Consensus        74 -~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~  152 (251)
                       +++|||||.+.|.|+||..||+..++.+.+....+....+.++|+.+||.+.++.+|.+|||||||||+|||||+..|+
T Consensus        87 ~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~  166 (228)
T COG4181          87 ARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPD  166 (228)
T ss_pred             ccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCC
Confidence             6899999999999999999999999999886666667778999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEee
Q psy7367         153 TVILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  212 (251)
Q Consensus       153 llllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~  212 (251)
                      +|+.||||.+||...-+++.+++-.+.  .|.|.|++|||...+.+ |+|++-|.+|+++.+
T Consensus       167 vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~~  227 (228)
T COG4181         167 VLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLVED  227 (228)
T ss_pred             EEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceeccC
Confidence            999999999999999999999999884  39999999999999886 999999999999753

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.3e-52  Score=397.62  Aligned_cols=215  Identities=22%  Similarity=0.387  Sum_probs=189.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CeeEEEEcceeCCCC-hH-Hhhcce
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV--SSGTAKIYNHDIRTD-MT-TIRRSL   76 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~~~-~~-~~~~~i   76 (251)
                      |+++|++++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|  ++|+|+++|+++... .. ..++.+
T Consensus         2 l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   80 (500)
T TIGR02633         2 LEMKGIVKTFG-GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI   80 (500)
T ss_pred             EEEEeEEEEeC-CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence            57999999996 47799999999999999999999999999999999999987  799999999988542 22 235679


Q ss_pred             EEEccCCCCCCCCCHHHHHHHHHHhc--C--CChHHHHHHHHHHHHHcCCCccc-CCCCCcCChhHHHHHHHHHHHccCC
Q psy7367          77 GVCPQYNALFDKLTVEEHMWFYSQLK--Q--VPKDLAQLEISNMIVDLGIPHKR-TSLANTLSGGMQRKLSVAMAFIGGS  151 (251)
Q Consensus        77 ~~v~q~~~l~~~ltv~e~l~~~~~~~--~--~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~kqrv~ia~al~~~p  151 (251)
                      +|+||++.+++.+||.||+.+.....  +  ...+...+++.++++.+++.+.. ++++.+|||||||||+|||||+.+|
T Consensus        81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p  160 (500)
T TIGR02633        81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQA  160 (500)
T ss_pred             EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCC
Confidence            99999999999999999998864332  1  22334456788999999998764 6789999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHH
Q psy7367         152 RTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  216 (251)
Q Consensus       152 ~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~  216 (251)
                      ++|||||||+|||+.++..+.++|++++ +|.|||++|||++++..+||++++|++|+++..++++
T Consensus       161 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~  226 (500)
T TIGR02633       161 RLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMS  226 (500)
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcc
Confidence            9999999999999999999999999985 5899999999999999999999999999999888764

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=100.00  E-value=2.9e-52  Score=359.14  Aligned_cols=216  Identities=25%  Similarity=0.410  Sum_probs=182.5

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      ++++|++++|++++.+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ....+++.++|+
T Consensus         1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~   80 (236)
T cd03253           1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV   80 (236)
T ss_pred             CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence            5799999999534679999999999999999999999999999999999999999999999998753 334556789999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHH-----HHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL-----EISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR  152 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~  152 (251)
                      ||++.+++ .|+.||+.++...  ........     .+.+.++.+  ++....++++.+||+|||||++|||||+.+|+
T Consensus        81 ~q~~~~~~-~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~  157 (236)
T cd03253          81 PQDTVLFN-DTIGYNIRYGRPD--ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP  157 (236)
T ss_pred             CCCChhhc-chHHHHHhhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            99998886 6999999875321  11111111     123344444  55566677889999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         153 TVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       153 llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      ++||||||+|||+.++..+.++|.++++|.|||++||+++++.. ||++++|++|+++..|+.+++..
T Consensus       158 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~~~~~~~~~  224 (236)
T cd03253         158 ILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELLA  224 (236)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEEECCEEEeeCCHHHHhh
Confidence            99999999999999999999999998669999999999999975 99999999999999988765543

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=100.00  E-value=5.1e-52  Score=361.07  Aligned_cols=217  Identities=21%  Similarity=0.266  Sum_probs=186.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCC--CCCCeeEEEEcceeCCCC-hHHhhc-ce
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM--LPVSSGTAKIYNHDIRTD-MTTIRR-SL   76 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl--~~p~~G~i~~~g~~~~~~-~~~~~~-~i   76 (251)
                      |+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|+++|.++... ....++ .+
T Consensus         8 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   86 (252)
T CHL00131          8 LEIKNLHASVNE-NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGI   86 (252)
T ss_pred             EEEEeEEEEeCC-EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeE
Confidence            578999999964 6799999999999999999999999999999999998  579999999999988542 222222 58


Q ss_pred             EEEccCCCCCCCCCHHHHHHHHHHhc----C---CChHHHHHHHHHHHHHcCCC-cccCCCCC-cCChhHHHHHHHHHHH
Q psy7367          77 GVCPQYNALFDKLTVEEHMWFYSQLK----Q---VPKDLAQLEISNMIVDLGIP-HKRTSLAN-TLSGGMQRKLSVAMAF  147 (251)
Q Consensus        77 ~~v~q~~~l~~~ltv~e~l~~~~~~~----~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgG~kqrv~ia~al  147 (251)
                      +|+||++.+++.+|+.+|+.+.....    .   ....+..+++.++++.+++. ...++++. .||||||||++|||||
T Consensus        87 ~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al  166 (252)
T CHL00131         87 FLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMA  166 (252)
T ss_pred             EEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHH
Confidence            99999999999999999998754321    1   11222345678899999997 46788887 5999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhh-cCEEEEeeCCEEEeecCHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLL-GDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~-~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      +.+|+++||||||+|||+.+++.++++|+++. +|.|||++|||++++..+ ||++++|++|+++..|+++..
T Consensus       167 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  239 (252)
T CHL00131        167 LLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELA  239 (252)
T ss_pred             HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence            99999999999999999999999999999985 589999999999999887 899999999999999988743

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=100.00  E-value=1.5e-52  Score=360.39  Aligned_cols=196  Identities=27%  Similarity=0.419  Sum_probs=175.0

Q ss_pred             eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHH
Q psy7367          17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMW   96 (251)
Q Consensus        17 l~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~   96 (251)
                      |+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....    ...+|+||++.+++.+|+.||+.
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----~~~~~v~q~~~l~~~~tv~e~l~   76 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG----PDRMVVFQNYSLLPWLTVRENIA   76 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC----hhheEEecCcccCCCCCHHHHHH
Confidence            57999999999999999999999999999999999999999999999875321    12489999999999999999998


Q ss_pred             HHHH--hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy7367          97 FYSQ--LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL  174 (251)
Q Consensus        97 ~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~  174 (251)
                      ++..  .......+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~  156 (230)
T TIGR01184        77 LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE  156 (230)
T ss_pred             HHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence            8642  12333444456788999999999888999999999999999999999999999999999999999999999999


Q ss_pred             HHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHH
Q psy7367         175 LIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  216 (251)
Q Consensus       175 l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~  216 (251)
                      |.++. + |.|||++|||++++..+||++++|++|+++..|++.
T Consensus       157 l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~  200 (230)
T TIGR01184       157 LMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQIL  200 (230)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCce
Confidence            99974 4 899999999999999999999999999999888654

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=100.00  E-value=1.4e-52  Score=353.62  Aligned_cols=197  Identities=23%  Similarity=0.311  Sum_probs=178.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++++|++ +.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.......+++++|+|
T Consensus         1 l~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   79 (201)
T cd03231           1 LEADELTCERDG-RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG   79 (201)
T ss_pred             CEEEEEEEEeCC-ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence            689999999964 7899999999999999999999999999999999999999999999999987543345677899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++.+|++||+.++....      ..+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||
T Consensus        80 q~~~~~~~~tv~e~l~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt  153 (201)
T cd03231          80 HAPGIKTTLSVLENLRFWHADH------SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPT  153 (201)
T ss_pred             cccccCCCcCHHHHHHhhcccc------cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            9999988899999998853211      2346788999999998889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe
Q psy7367         161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII  204 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l  204 (251)
                      +|||+.+++.+.++|.+++ +|.|+|++||+......+|++++.+
T Consensus       154 ~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~  198 (201)
T cd03231         154 TALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL  198 (201)
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence            9999999999999999885 5899999999999999999999877

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.2e-52  Score=373.95  Aligned_cols=219  Identities=22%  Similarity=0.369  Sum_probs=190.5

Q ss_pred             CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHH
Q psy7367           1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTT   71 (251)
Q Consensus         1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~   71 (251)
                      |+++|++++|.+ .+++|+|+||+|++||++||+||||||||||+++|+|+.+     |++|+|.++|+++..   ....
T Consensus        81 i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~  160 (329)
T PRK14257         81 FEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLE  160 (329)
T ss_pred             EEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHh
Confidence            478999999952 3579999999999999999999999999999999999986     579999999999852   2235


Q ss_pred             hhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHH-HHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHH
Q psy7367          72 IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDL-AQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMA  146 (251)
Q Consensus        72 ~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~-~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~a  146 (251)
                      +++.++|+||++.+|+ .|++||+.|+....+....+ ..+.+.++++.+++.    ...++++.+||||||||++||||
T Consensus       161 lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARA  239 (329)
T PRK14257        161 LRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARA  239 (329)
T ss_pred             hhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHH
Confidence            6788999999999886 79999999865443333222 234467888888873    45678999999999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      |+.+|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+.++||||++|++|++++.|+++.+..
T Consensus       240 l~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~  313 (329)
T PRK14257        240 IALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFI  313 (329)
T ss_pred             HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            99999999999999999999999999999998778999999999999999999999999999999999987643

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=3.5e-52  Score=396.55  Aligned_cols=219  Identities=26%  Similarity=0.407  Sum_probs=189.4

Q ss_pred             CEEEeEEEEeCC----CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEc-cee---CCCC----
Q psy7367           1 MAIQNLSKRFPN----GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY-NHD---IRTD----   68 (251)
Q Consensus         1 l~i~~l~~~y~~----~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~-g~~---~~~~----   68 (251)
                      |+++|++++|++    ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++ |.+   +...    
T Consensus       280 l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~  359 (520)
T TIGR03269       280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG  359 (520)
T ss_pred             EEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhh
Confidence            578999999942    2569999999999999999999999999999999999999999999996 643   2211    


Q ss_pred             hHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----ccCCCCCcCChhHHHHHHH
Q psy7367          69 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----KRTSLANTLSGGMQRKLSV  143 (251)
Q Consensus        69 ~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~LSgG~kqrv~i  143 (251)
                      ....+++++|+||++.+++.+||.||+.+.... ..+....++++.++++.+++.+     ..++++.+|||||||||+|
T Consensus       360 ~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~l  438 (520)
T TIGR03269       360 RGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVAL  438 (520)
T ss_pred             HHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHH
Confidence            123456799999999999999999999875433 2233334457889999999975     5789999999999999999


Q ss_pred             HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         144 AMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       144 a~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      ||||+.+|++|||||||+|||+.+++.++++|++++ + |.|||++|||++++.++|||+++|++|++++.|+++.+.+
T Consensus       439 aral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  517 (520)
T TIGR03269       439 AQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE  517 (520)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            999999999999999999999999999999999984 4 8999999999999999999999999999999998876543

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.7e-52  Score=362.97  Aligned_cols=217  Identities=24%  Similarity=0.368  Sum_probs=188.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCC---C--ChH
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIR---T--DMT   70 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~---~--~~~   70 (251)
                      |+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+|     ++|+|.++|.++.   .  ...
T Consensus        17 l~~~~l~~~~~~-~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~   95 (265)
T PRK14252         17 SEVNKLNFYYGG-YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPI   95 (265)
T ss_pred             EEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHH
Confidence            478999999964 6899999999999999999999999999999999999875     7999999998763   1  123


Q ss_pred             HhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHH
Q psy7367          71 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK-DLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAM  145 (251)
Q Consensus        71 ~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~  145 (251)
                      .+++.++|+||++.+|+. |++||+.+.....+... ...++++.++++.+++.    +..++++.+||+|||||++|||
T Consensus        96 ~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar  174 (265)
T PRK14252         96 EVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIAR  174 (265)
T ss_pred             HHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHH
Confidence            456789999999998885 99999988654433332 22345678888888873    4567889999999999999999


Q ss_pred             HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         146 AFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       146 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      ||+.+|+++||||||+|||+.++..+.++|++++++.|||++||+++++..+|||+++|++|+++..|+.+.+.
T Consensus       175 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  248 (265)
T PRK14252        175 ALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIF  248 (265)
T ss_pred             HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            99999999999999999999999999999999876799999999999999999999999999999999987654

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.4e-52  Score=389.07  Aligned_cols=213  Identities=23%  Similarity=0.424  Sum_probs=196.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-C-hHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-D-MTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~-~~~~~~~i~~   78 (251)
                      ++++|++|+|+ +.++|++|||++.+||+++|+|.||||||||+|+|+|.++|++|+|+++|+++.. + .......|+.
T Consensus         9 l~~~~i~K~Fg-gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~   87 (500)
T COG1129           9 LELRGISKSFG-GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIAT   87 (500)
T ss_pred             eeeecceEEcC-CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEE
Confidence            47899999997 4889999999999999999999999999999999999999999999999999863 3 3445679999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEE
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLK----QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTV  154 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ll  154 (251)
                      |+|+.+|+|+|||.||+.++....    -+.++..++++.++|+.+++....+.++.+||.||||.|+|||||..+++++
T Consensus        88 V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arll  167 (500)
T COG1129          88 VHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVL  167 (500)
T ss_pred             EeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            999999999999999998865432    2567788889999999999965588999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367         155 ILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  214 (251)
Q Consensus       155 llDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~  214 (251)
                      |||||||+|+....+.+++++++++ +|.+||++||.++++.++||||.||+||+.+...+
T Consensus       168 IlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~  228 (500)
T COG1129         168 ILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP  228 (500)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence            9999999999999999999999996 69999999999999999999999999999998777

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=100.00  E-value=2.9e-52  Score=362.49  Aligned_cols=211  Identities=20%  Similarity=0.327  Sum_probs=186.2

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      ++++||++.     .+|+++||+|++||+++|+||||||||||+++|+|++++ +|+|+++|+++.. ....+++.++|+
T Consensus         1 ~~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v   74 (248)
T PRK03695          1 MQLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYL   74 (248)
T ss_pred             Ccccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEe
Confidence            568899885     279999999999999999999999999999999999864 9999999998854 334455679999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHcc-------CCC
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIG-------GSR  152 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~-------~p~  152 (251)
                      ||++.+++.+|+.+|+.++... .....+..+++.++++.+++.+..++++.+||+|||||++|||||+.       +|+
T Consensus        75 ~q~~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~  153 (248)
T PRK03695         75 SQQQTPPFAMPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQ  153 (248)
T ss_pred             cccCccCCCccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCC
Confidence            9999888889999999886422 22233445678899999999988899999999999999999999997       679


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         153 TVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       153 llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      +|||||||+|||+.+++.+.++|++++ +|.|||++||+++++.++||++++|++|+++..|+++.+
T Consensus       154 llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  220 (248)
T PRK03695        154 LLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEV  220 (248)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            999999999999999999999999985 589999999999999999999999999999999987655

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-52  Score=404.87  Aligned_cols=218  Identities=25%  Similarity=0.357  Sum_probs=191.8

Q ss_pred             CEEEeEEEEeCC---CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCC----------C
Q psy7367           1 MAIQNLSKRFPN---GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR----------T   67 (251)
Q Consensus         1 l~i~~l~~~y~~---~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~----------~   67 (251)
                      |+++|++++|+.   ..++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|..+.          .
T Consensus        13 l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~   92 (623)
T PRK10261         13 LAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSE   92 (623)
T ss_pred             EEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccccc
Confidence            579999999952   246999999999999999999999999999999999999999999999987441          1


Q ss_pred             -Ch---HHhh-cceEEEccCC--CCCCCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHHHcCCCc---ccCCCCCcCChh
Q psy7367          68 -DM---TTIR-RSLGVCPQYN--ALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIVDLGIPH---KRTSLANTLSGG  136 (251)
Q Consensus        68 -~~---~~~~-~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgG  136 (251)
                       ..   ..++ +.||||||++  .+++.+||.||+.+..+.. +....+.++++.++++.+||.+   ..++++.+||||
T Consensus        93 ~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgG  172 (623)
T PRK10261         93 QSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGG  172 (623)
T ss_pred             CCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHH
Confidence             11   1223 4799999998  6788899999999876653 4555566678999999999963   578999999999


Q ss_pred             HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367         137 MQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  214 (251)
Q Consensus       137 ~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~  214 (251)
                      |||||+||+||+.+|++|||||||++||+.+++.++++|+++. + |.|||+||||++++..+||||++|++|++++.|+
T Consensus       173 q~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g~  252 (623)
T PRK10261        173 MRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGS  252 (623)
T ss_pred             HHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecccCC
Confidence            9999999999999999999999999999999999999999985 4 8999999999999999999999999999999998


Q ss_pred             HHHH
Q psy7367         215 SVFL  218 (251)
Q Consensus       215 ~~~~  218 (251)
                      ++.+
T Consensus       253 ~~~~  256 (623)
T PRK10261        253 VEQI  256 (623)
T ss_pred             HHHh
Confidence            7655

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=100.00  E-value=3.2e-52  Score=356.38  Aligned_cols=204  Identities=24%  Similarity=0.387  Sum_probs=176.8

Q ss_pred             CEEEeEEEEeCC------CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEc--ce--eCCC-Ch
Q psy7367           1 MAIQNLSKRFPN------GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY--NH--DIRT-DM   69 (251)
Q Consensus         1 l~i~~l~~~y~~------~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~--g~--~~~~-~~   69 (251)
                      ++++|++++|++      ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++  |+  ++.. ..
T Consensus         2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~   81 (224)
T TIGR02324         2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP   81 (224)
T ss_pred             EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence            578999999952      1469999999999999999999999999999999999999999999998  43  4321 11


Q ss_pred             H---Hh-hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHH
Q psy7367          70 T---TI-RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVA  144 (251)
Q Consensus        70 ~---~~-~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia  144 (251)
                      .   .. ++.++|+||++.+++.+||.||+.+.....+.......+++.++++.+++.+ ..++++.+||+|||||++||
T Consensus        82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la  161 (224)
T TIGR02324        82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIA  161 (224)
T ss_pred             HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHH
Confidence            1   22 4579999999999999999999988654444434444567889999999976 45789999999999999999


Q ss_pred             HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe
Q psy7367         145 MAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII  204 (251)
Q Consensus       145 ~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l  204 (251)
                      |||+.+|+++||||||++||+.+++.+.++|++++ +|.|||++||+++++..+||+++.+
T Consensus       162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~  222 (224)
T TIGR02324       162 RGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV  222 (224)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence            99999999999999999999999999999999985 5899999999999999999999876

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-52  Score=344.63  Aligned_cols=213  Identities=26%  Similarity=0.419  Sum_probs=196.9

Q ss_pred             CEEEeEEEEeCCCcc--eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNGKL--AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~--il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~   78 (251)
                      +.+++++.+|.+ +.  +|+|+|++|.+||.++++||||||||||||+++|+.+|+.|+|.++|+++..+..    .-|.
T Consensus         4 l~~~~~sl~y~g-~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga----ergv   78 (259)
T COG4525           4 LNVSHLSLSYEG-KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA----ERGV   78 (259)
T ss_pred             eehhheEEecCC-cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc----ccee
Confidence            356889999964 55  9999999999999999999999999999999999999999999999999975432    2389


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE  158 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE  158 (251)
                      |||++.++|.+|+.||++|+.+++++++.+..+.+.+.+..+||.+..++++.+|||||||||.|||||+.+|++|+|||
T Consensus        79 VFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDE  158 (259)
T COG4525          79 VFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDE  158 (259)
T ss_pred             EeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecC
Confidence            99999999999999999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhh-h-CCCeEEEEeCCHHHHHhhcCEEEEeeC--CEEEeecCHHHH
Q psy7367         159 PTSGVDPYSRRSIWELLIKY-K-KGRTVILTTHYMDEADLLGDRIAIIAA--GKLQCCGSSVFL  218 (251)
Q Consensus       159 Pt~gLD~~~~~~l~~~l~~l-~-~g~tiii~tHd~~~~~~~~d~i~~l~~--G~i~~~g~~~~~  218 (251)
                      |+++||.-.++++-++|.++ + .|+.++++|||++++.-+++|+++|+-  |+++..-++++-
T Consensus       159 PfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~df~  222 (259)
T COG4525         159 PFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLDFA  222 (259)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCCHH
Confidence            99999999999999999987 3 499999999999999999999999984  789887776643

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=100.00  E-value=7.1e-52  Score=355.00  Aligned_cols=199  Identities=22%  Similarity=0.267  Sum_probs=172.6

Q ss_pred             EEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccC
Q psy7367           3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQY   82 (251)
Q Consensus         3 i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~   82 (251)
                      ++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..           ..+.
T Consensus        25 ~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~-----------~~~~   92 (224)
T cd03220          25 ILGRKGEVG-EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL-----------LGLG   92 (224)
T ss_pred             hhhhhhhcC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh-----------hccc
Confidence            345555553 4779999999999999999999999999999999999999999999999987521           1112


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCC
Q psy7367          83 NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSG  162 (251)
Q Consensus        83 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~g  162 (251)
                      ..+++.+||.||+.++...++....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+|
T Consensus        93 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~g  172 (224)
T cd03220          93 GGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAV  172 (224)
T ss_pred             ccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            34556789999998876554444444556788899999999989999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367         163 VDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  213 (251)
Q Consensus       163 LD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g  213 (251)
                      ||+.+++.++++|.++. +|.|||++||+++++..+||++++|++|++++.|
T Consensus       173 LD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  224 (224)
T cd03220         173 GDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG  224 (224)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence            99999999999999985 5899999999999999999999999999998754

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=100.00  E-value=2.4e-52  Score=356.34  Aligned_cols=205  Identities=23%  Similarity=0.343  Sum_probs=177.1

Q ss_pred             CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++|++++|++ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. ....+++.++|
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   82 (221)
T cd03244           3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI   82 (221)
T ss_pred             EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence            578999999964 2479999999999999999999999999999999999999999999999998753 33456788999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCcCChhHHHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK-----------RTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      +||++.+++ .|++||+.+...   ...    +++.++++.+++.+.           .++++.+||+|||||++|||||
T Consensus        83 ~~q~~~l~~-~tv~enl~~~~~---~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral  154 (221)
T cd03244          83 IPQDPVLFS-GTIRSNLDPFGE---YSD----EELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARAL  154 (221)
T ss_pred             ECCCCcccc-chHHHHhCcCCC---CCH----HHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHH
Confidence            999999876 599999975421   111    234555666665443           3568999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  214 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~  214 (251)
                      +.+|+++||||||+|||+.+++.++++|++++++.|||++||+++++.. ||++++|++|+++..|+
T Consensus       155 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~  220 (221)
T cd03244         155 LRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS  220 (221)
T ss_pred             hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCeEEecCC
Confidence            9999999999999999999999999999998767999999999999976 99999999999988765

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=4.7e-52  Score=387.98  Aligned_cols=227  Identities=24%  Similarity=0.398  Sum_probs=198.9

Q ss_pred             CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC----eeEEEEcceeCCC----Ch
Q psy7367           1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS----SGTAKIYNHDIRT----DM   69 (251)
Q Consensus         1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~----~G~i~~~g~~~~~----~~   69 (251)
                      |+++||++.|...   ..+++||||+|.+||++||+|.|||||||+.++|+|++++.    +|+|.++|+++..    ..
T Consensus         6 L~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~   85 (539)
T COG1123           6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREM   85 (539)
T ss_pred             EEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHH
Confidence            5899999999532   25999999999999999999999999999999999999887    8999999998743    12


Q ss_pred             HHh-hcceEEEccCC--CCCCCCCHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCCcccC--CCCCcCChhHHHHHHH
Q psy7367          70 TTI-RRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQ-VPKDLAQLEISNMIVDLGIPHKRT--SLANTLSGGMQRKLSV  143 (251)
Q Consensus        70 ~~~-~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LSgG~kqrv~i  143 (251)
                      ..+ .+.|+|+||+|  .|-|-+|+.+.+.-....+. ...+++++++.++|+.++|.+...  ++|++|||||||||.|
T Consensus        86 r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~i  165 (539)
T COG1123          86 RKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMI  165 (539)
T ss_pred             HHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHH
Confidence            233 36899999997  45556899998877666654 447788889999999999986555  4999999999999999


Q ss_pred             HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         144 AMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       144 a~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      |+||+.+|++||+||||++||+..+.+|+++|++++  .|.++|+||||++.+.++|||++||++|++++.|+++++...
T Consensus       166 AmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~  245 (539)
T COG1123         166 AMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN  245 (539)
T ss_pred             HHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhc
Confidence            999999999999999999999999999999999985  399999999999999999999999999999999999888766


Q ss_pred             hcCcce
Q psy7367         222 FARGYY  227 (251)
Q Consensus       222 ~~~~~~  227 (251)
                      ..+.|.
T Consensus       246 p~hpYT  251 (539)
T COG1123         246 PQHPYT  251 (539)
T ss_pred             cCCccc
Confidence            555543

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=4e-52  Score=396.94  Aligned_cols=218  Identities=20%  Similarity=0.328  Sum_probs=191.0

Q ss_pred             CEEEeEEEEeCC----------CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-Ch
Q psy7367           1 MAIQNLSKRFPN----------GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DM   69 (251)
Q Consensus         1 l~i~~l~~~y~~----------~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~   69 (251)
                      |+++|++++|+.          ++.+|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++.. ..
T Consensus       276 l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~  354 (529)
T PRK15134        276 LDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNR  354 (529)
T ss_pred             ccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccch
Confidence            578999999951          2579999999999999999999999999999999999984 89999999998753 11


Q ss_pred             ---HHhhcceEEEccCC--CCCCCCCHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHH
Q psy7367          70 ---TTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQ--VPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKL  141 (251)
Q Consensus        70 ---~~~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv  141 (251)
                         ..++++++|+||++  .+++++||.||+.++...+.  .+..+.++++.++++.+++. +..++++.+|||||||||
T Consensus       355 ~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv  434 (529)
T PRK15134        355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRI  434 (529)
T ss_pred             hhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHH
Confidence               12356899999997  47888999999988654332  33344456788999999997 578999999999999999


Q ss_pred             HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         142 SVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       142 ~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +|||||+.+|++|||||||+|||+.+++.++++|++++ + |.|||++|||++++..+|||+++|++|++++.|+++++.
T Consensus       435 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  514 (529)
T PRK15134        435 AIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVF  514 (529)
T ss_pred             HHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHh
Confidence            99999999999999999999999999999999999984 4 899999999999999999999999999999999887663

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=4.9e-52  Score=353.50  Aligned_cols=200  Identities=22%  Similarity=0.281  Sum_probs=179.7

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++++|++ +.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...  ..++.++|++
T Consensus        12 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~--~~~~~i~~~~   88 (214)
T PRK13543         12 LAAHALAFSRNE-EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG--DRSRFMAYLG   88 (214)
T ss_pred             EEEeeEEEecCC-ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch--hhhhceEEee
Confidence            478999999964 6799999999999999999999999999999999999999999999999987532  2345799999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++.+|+.||+.+....++..   ..+.+.++++.+++.+..++++.+||+|||||++||||++.+|+++||||||
T Consensus        89 q~~~~~~~~t~~e~l~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt  165 (214)
T PRK13543         89 HLPGLKADLSTLENLHFLCGLHGRR---AKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPY  165 (214)
T ss_pred             cCcccccCCcHHHHHHHHHHhcCCc---HHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            9999998899999998876544321   2345778999999998889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367         161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAA  206 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~  206 (251)
                      ++||+.+++.+.++|.++. +|.|||++|||++++.++||++++++.
T Consensus       166 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~  212 (214)
T PRK13543        166 ANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA  212 (214)
T ss_pred             ccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence            9999999999999999875 589999999999999999999999863

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.9e-52  Score=395.97  Aligned_cols=218  Identities=22%  Similarity=0.327  Sum_probs=189.4

Q ss_pred             CEEEeEEEEeC--CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-CCeeEEEEcceeCCCC--hHHhhcc
Q psy7367           1 MAIQNLSKRFP--NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-VSSGTAKIYNHDIRTD--MTTIRRS   75 (251)
Q Consensus         1 l~i~~l~~~y~--~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-p~~G~i~~~g~~~~~~--~~~~~~~   75 (251)
                      |+++|++++|+  +++.+|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++...  ....++.
T Consensus       260 l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~  339 (506)
T PRK13549        260 LEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQG  339 (506)
T ss_pred             EEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCC
Confidence            57899999994  23569999999999999999999999999999999999998 5999999999987532  2234668


Q ss_pred             eEEEccCC---CCCCCCCHHHHHHHHHH--hcC---CChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHH
Q psy7367          76 LGVCPQYN---ALFDKLTVEEHMWFYSQ--LKQ---VPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMA  146 (251)
Q Consensus        76 i~~v~q~~---~l~~~ltv~e~l~~~~~--~~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~a  146 (251)
                      ++|+||++   .+++++||.||+.+...  +..   ......++++.++++.+++. +..++++.+|||||||||+||||
T Consensus       340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~a  419 (506)
T PRK13549        340 IAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKC  419 (506)
T ss_pred             CEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHH
Confidence            99999996   47888999999987532  211   12333446788999999996 57899999999999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      |+.+|++|||||||+|||+.+++.++++|.+++ +|.|||++|||++++.++|||+++|++|+++..|+++++
T Consensus       420 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~  492 (506)
T PRK13549        420 LLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL  492 (506)
T ss_pred             HhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence            999999999999999999999999999999985 599999999999999999999999999999998876543

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=1.1e-51  Score=393.95  Aligned_cols=218  Identities=25%  Similarity=0.396  Sum_probs=190.1

Q ss_pred             CEEEeEEEEeCC---CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCC-ChH-
Q psy7367           1 MAIQNLSKRFPN---GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRT-DMT-   70 (251)
Q Consensus         1 l~i~~l~~~y~~---~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~-~~~-   70 (251)
                      ++++|++++|++   .+++|+++||+|++||+++|+||||||||||+|+|+|+++|     ++|+|+++|+++.. ... 
T Consensus         6 l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   85 (529)
T PRK15134          6 LAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQT   85 (529)
T ss_pred             EEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHH
Confidence            578999999953   25799999999999999999999999999999999999986     79999999998853 221 


Q ss_pred             --Hhh-cceEEEccCCC--CCCCCCHHHHHHHHHHh-cCCChHHHHHHHHHHHHHcCCCc---ccCCCCCcCChhHHHHH
Q psy7367          71 --TIR-RSLGVCPQYNA--LFDKLTVEEHMWFYSQL-KQVPKDLAQLEISNMIVDLGIPH---KRTSLANTLSGGMQRKL  141 (251)
Q Consensus        71 --~~~-~~i~~v~q~~~--l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgG~kqrv  141 (251)
                        ..+ +++||+||++.  +++.+|+.+|+.+.... .+.+..+..+++.++++.++|.+   ..++++.+|||||||||
T Consensus        86 ~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv  165 (529)
T PRK15134         86 LRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRV  165 (529)
T ss_pred             HHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHH
Confidence              223 57999999974  66778999998865432 23444555677899999999975   35889999999999999


Q ss_pred             HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         142 SVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       142 ~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      +|||||+.+|++|||||||++||+.++..++++|++++ + |.|||+||||++++..+|||+++|++|+++..|+++++
T Consensus       166 ~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~  244 (529)
T PRK15134        166 MIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATL  244 (529)
T ss_pred             HHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            99999999999999999999999999999999999984 4 89999999999999999999999999999999987655

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=100.00  E-value=2.6e-52  Score=357.43  Aligned_cols=207  Identities=21%  Similarity=0.406  Sum_probs=177.2

Q ss_pred             CEEEeEEEEeCCC--cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367           1 MAIQNLSKRFPNG--KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~~--~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~   77 (251)
                      ++++|++++|+++  ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....++.++
T Consensus        12 l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~   91 (226)
T cd03248          12 VKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVS   91 (226)
T ss_pred             EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEE
Confidence            5789999999642  469999999999999999999999999999999999999999999999988743 2334567899


Q ss_pred             EEccCCCCCCCCCHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367          78 VCPQYNALFDKLTVEEHMWFYSQLKQVP---KDLAQLEISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR  152 (251)
Q Consensus        78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~---~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~  152 (251)
                      |+||++.+|+ .|++||+.+........   .......+.++++.+  |+.+..++++.+|||||||||+|||||+.+|+
T Consensus        92 ~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~  170 (226)
T cd03248          92 LVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQ  170 (226)
T ss_pred             EEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            9999998876 59999998753321110   001112356788888  88888899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEE
Q psy7367         153 TVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL  209 (251)
Q Consensus       153 llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i  209 (251)
                      ++||||||++||+.+++.+.++|+++.++.|||++|||++++.. ||++++|++|++
T Consensus       171 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~i  226 (226)
T cd03248         171 VLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER-ADQILVLDGGRI  226 (226)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh-CCEEEEecCCcC
Confidence            99999999999999999999999998667999999999999975 999999999874

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.5e-51  Score=365.82  Aligned_cols=217  Identities=22%  Similarity=0.372  Sum_probs=188.0

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~~   72 (251)
                      |+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++     |++|+|+++|.++..   ....+
T Consensus        46 l~i~nl~~~~~~-~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~  124 (305)
T PRK14264         46 LSVEDLDVYYGD-DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVEL  124 (305)
T ss_pred             EEEEEEEEEeCC-eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHH
Confidence            478999999964 679999999999999999999999999999999999986     689999999998743   22345


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhc------------CCC-hHHHHHHHHHHHHHcCCC----cccCCCCCcCCh
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLK------------QVP-KDLAQLEISNMIVDLGIP----HKRTSLANTLSG  135 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~------------~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSg  135 (251)
                      ++.++|+||++.+++ .||+||+.+.....            +.. .....+++.++++.+++.    +..++++.+|||
T Consensus       125 ~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg  203 (305)
T PRK14264        125 RKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSG  203 (305)
T ss_pred             hhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCH
Confidence            678999999998887 59999998864321            111 122345688899999884    456888999999


Q ss_pred             hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEE-EEeeCCEEEeecC
Q psy7367         136 GMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRI-AIIAAGKLQCCGS  214 (251)
Q Consensus       136 G~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i-~~l~~G~i~~~g~  214 (251)
                      ||||||+|||||+.+|++|||||||+|||+.++..+.++|+++.++.|||++||+++++..+||++ ++|++|+++..|+
T Consensus       204 Gq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~~g~  283 (305)
T PRK14264        204 GQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDD  283 (305)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEEEeCC
Confidence            999999999999999999999999999999999999999999876789999999999999999996 5789999999999


Q ss_pred             HHHHH
Q psy7367         215 SVFLK  219 (251)
Q Consensus       215 ~~~~~  219 (251)
                      ++.+.
T Consensus       284 ~~~~~  288 (305)
T PRK14264        284 TDKIF  288 (305)
T ss_pred             HHHHH
Confidence            87654

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.7e-52  Score=334.71  Aligned_cols=217  Identities=22%  Similarity=0.352  Sum_probs=201.0

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCC--C-----ChHHhh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR--T-----DMTTIR   73 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~--~-----~~~~~~   73 (251)
                      |+++|+++.|| ..++|-||+|+.++||.+.++||+|||||||+|.|+-+.-|.+|+..+.|....  .     ...++|
T Consensus         3 irv~~in~~yg-~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr   81 (242)
T COG4161           3 IQLNGINCFYG-AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR   81 (242)
T ss_pred             eEEcccccccc-cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence            57899999997 478999999999999999999999999999999999999999999999876542  1     123678


Q ss_pred             cceEEEccCCCCCCCCCHHHHHHH-HHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367          74 RSLGVCPQYNALFDKLTVEEHMWF-YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR  152 (251)
Q Consensus        74 ~~i~~v~q~~~l~~~ltv~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~  152 (251)
                      +.+|+|||...++|++||.||+.- +.+..+.+++++..++.++|+++.|.+++|+.|-.|||||+|||+|||||+++|+
T Consensus        82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpq  161 (242)
T COG4161          82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQ  161 (242)
T ss_pred             HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCc
Confidence            999999999999999999999865 5677889999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhhhC-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         153 TVILDEPTSGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       153 llllDEPt~gLD~~~~~~l~~~l~~l~~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      +|++||||++|||+-..++.++++++.. |.|=+++||..+.+.+.+.+++.|++|+|++.|+...+
T Consensus       162 vllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f  228 (242)
T COG4161         162 VLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF  228 (242)
T ss_pred             EEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence            9999999999999999999999999975 99999999999999999999999999999999987543

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=100.00  E-value=1.3e-51  Score=340.06  Aligned_cols=172  Identities=41%  Similarity=0.768  Sum_probs=160.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|++++|++ .++|+++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++......+++.++|+|
T Consensus         1 l~~~~l~~~~~~-~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   79 (173)
T cd03230           1 IEVRNLSKRYGK-KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP   79 (173)
T ss_pred             CEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence            579999999964 6799999999999999999999999999999999999999999999999987543345567899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++.+|+.||+.                                    ||+||+||++|||||+.+|+++||||||
T Consensus        80 q~~~~~~~~tv~~~~~------------------------------------LS~G~~qrv~laral~~~p~illlDEPt  123 (173)
T cd03230          80 EEPSLYENLTVRENLK------------------------------------LSGGMKQRLALAQALLHDPELLILDEPT  123 (173)
T ss_pred             cCCccccCCcHHHHhh------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            9999999899999984                                    9999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEE
Q psy7367         161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKL  209 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i  209 (251)
                      ++||+.+++.+.++|+++. +|.|+|++|||++++..+||++++|++|++
T Consensus       124 ~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i  173 (173)
T cd03230         124 SGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI  173 (173)
T ss_pred             cCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence            9999999999999999985 589999999999999999999999999864

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=100.00  E-value=1e-51  Score=364.13  Aligned_cols=210  Identities=23%  Similarity=0.386  Sum_probs=186.6

Q ss_pred             CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      |+++|++++|.+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++.. ....+++.|+|
T Consensus         3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~   81 (275)
T cd03289           3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV   81 (275)
T ss_pred             EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence            578999999942 3579999999999999999999999999999999999997 78999999999854 34567789999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCc-----------CChhHHHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANT-----------LSGGMQRKLSVAMAF  147 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----------LSgG~kqrv~ia~al  147 (251)
                      +||++.+|+. |+++|+..+..   ..    .+++.++++.++|.+..++.|..           ||+|||||++|||||
T Consensus        82 v~q~~~lf~~-tv~~nl~~~~~---~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal  153 (275)
T cd03289          82 IPQKVFIFSG-TFRKNLDPYGK---WS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV  153 (275)
T ss_pred             ECCCcccchh-hHHHHhhhccC---CC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence            9999999975 99999964321   12    23567788999999888888876           999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      +.+|++|||||||++||+.++..+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++..
T Consensus       154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l~~  225 (275)
T cd03289         154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLLN  225 (275)
T ss_pred             hcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHHhh
Confidence            9999999999999999999999999999988778999999999999875 99999999999999999987654

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=100.00  E-value=4.1e-51  Score=354.42  Aligned_cols=217  Identities=21%  Similarity=0.290  Sum_probs=183.7

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCeeEEEEcceeCCC-ChHHh-hcce
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML--PVSSGTAKIYNHDIRT-DMTTI-RRSL   76 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~--~p~~G~i~~~g~~~~~-~~~~~-~~~i   76 (251)
                      |+++|++++|++ +++|+++||+|++|++++|+||||||||||+++|+|++  +|++|+|.++|+++.. ..... ++.+
T Consensus         2 i~~~nl~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   80 (248)
T PRK09580          2 LSIKDLHVSVED-KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI   80 (248)
T ss_pred             eEEEEEEEEeCC-eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence            579999999964 67999999999999999999999999999999999995  6999999999988753 22222 3579


Q ss_pred             EEEccCCCCCCCCCHHHHHHHHHH-h---cC---CChHHHHHHHHHHHHHcCCC-cccCCCCC-cCChhHHHHHHHHHHH
Q psy7367          77 GVCPQYNALFDKLTVEEHMWFYSQ-L---KQ---VPKDLAQLEISNMIVDLGIP-HKRTSLAN-TLSGGMQRKLSVAMAF  147 (251)
Q Consensus        77 ~~v~q~~~l~~~ltv~e~l~~~~~-~---~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgG~kqrv~ia~al  147 (251)
                      +|++|++.+++.+|+.+++.+... .   ..   .......+.++++++.+++. +..++++. +||||||||++|||||
T Consensus        81 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral  160 (248)
T PRK09580         81 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA  160 (248)
T ss_pred             EEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHH
Confidence            999999998888887777654321 1   11   11122345678899999995 56677775 8999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhh-cCEEEEeeCCEEEeecCHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLL-GDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~-~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      +.+|++|||||||++||+.+++.+.++|++++ +++|||++|||++++..+ ||++++|++|+++..|+++..
T Consensus       161 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~  233 (248)
T PRK09580        161 VLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV  233 (248)
T ss_pred             HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence            99999999999999999999999999999986 489999999999999987 899999999999999988754

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=100.00  E-value=1.7e-51  Score=345.96  Aligned_cols=196  Identities=25%  Similarity=0.323  Sum_probs=174.0

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.......++.++|++
T Consensus         1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   79 (198)
T TIGR01189         1 LAARNLACSRG-ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG   79 (198)
T ss_pred             CEEEEEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence            68999999996 47899999999999999999999999999999999999999999999999987543344567899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++.+|+.||+.++....+.  .  .+++.++++.+++.+..++++.+||||||||++||||++.+|+++||||||
T Consensus        80 q~~~~~~~~tv~~~l~~~~~~~~~--~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt  155 (198)
T TIGR01189        80 HLPGLKPELSALENLHFWAAIHGG--A--QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPT  155 (198)
T ss_pred             cCcccccCCcHHHHHHHHHHHcCC--c--HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            999888889999999886554331  1  245788999999998889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEE
Q psy7367         161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAI  203 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~  203 (251)
                      ++||+.+++.++++|.+++ +|.|||++||+...+  .|++++.
T Consensus       156 ~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~--~~~~~~~  197 (198)
T TIGR01189       156 TALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL--VEARELR  197 (198)
T ss_pred             cCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc--cceEEee
Confidence            9999999999999999984 589999999998665  4677764

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=9.2e-52  Score=391.04  Aligned_cols=209  Identities=22%  Similarity=0.251  Sum_probs=184.5

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      |+++|++++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. .....++.++|+
T Consensus         4 l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~   82 (490)
T PRK10938          4 LQISQGTFRLSD-TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE   82 (490)
T ss_pred             EEEEeEEEEcCC-eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhcee
Confidence            578999999964 679999999999999999999999999999999999999999999999987643 233445679999


Q ss_pred             ccCCCC--C-C-----CCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367          80 PQYNAL--F-D-----KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGS  151 (251)
Q Consensus        80 ~q~~~l--~-~-----~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p  151 (251)
                      ||++.+  + +     .+|++|++.+.        ....+++.++++.+++.+..++++.+|||||||||+||+||+.+|
T Consensus        83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p  154 (490)
T PRK10938         83 WQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEP  154 (490)
T ss_pred             ccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence            998643  1 1     46888887542        122456889999999998899999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         152 RTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       152 ~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      ++|||||||+|||+.+++.++++|++++ +|.|||++|||++++.++||++++|++|+++..|+++++
T Consensus       155 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  222 (490)
T PRK10938        155 DLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI  222 (490)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999985 589999999999999999999999999999999987654

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-51  Score=392.47  Aligned_cols=212  Identities=21%  Similarity=0.367  Sum_probs=184.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-h-HHhhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-M-TTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~-~~~~~~i~~   78 (251)
                      |+++|+++.|+   .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... . ...+++++|
T Consensus       266 l~~~~l~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~  342 (510)
T PRK09700        266 FEVRNVTSRDR---KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAY  342 (510)
T ss_pred             EEEeCccccCC---CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEE
Confidence            46899998773   389999999999999999999999999999999999999999999999987532 2 244678999


Q ss_pred             EccC---CCCCCCCCHHHHHHHHHHhc--------CC-ChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHH
Q psy7367          79 CPQY---NALFDKLTVEEHMWFYSQLK--------QV-PKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAM  145 (251)
Q Consensus        79 v~q~---~~l~~~ltv~e~l~~~~~~~--------~~-~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~  145 (251)
                      +||+   +.+++++||+||+.+....+        +. .....++++.++++.+++. +..++++.+|||||||||+|||
T Consensus       343 v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAr  422 (510)
T PRK09700        343 ITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISK  422 (510)
T ss_pred             ccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHH
Confidence            9998   46888999999998753211        11 1223345678999999997 7889999999999999999999


Q ss_pred             HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCH
Q psy7367         146 AFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  215 (251)
Q Consensus       146 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~  215 (251)
                      ||+.+|++|||||||+|||+.+++.++++|++++ +|.|||++|||++++..+|||+++|++|+++..++.
T Consensus       423 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~  493 (510)
T PRK09700        423 WLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN  493 (510)
T ss_pred             HHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence            9999999999999999999999999999999985 589999999999999999999999999999887654

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.9e-52  Score=343.27  Aligned_cols=217  Identities=24%  Similarity=0.345  Sum_probs=194.4

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      |+++|+|++.. ++.+|+++||++.+||+.+|+||||||||||||.|+|.+.|++|++.++|.++.. ...++.++-+.+
T Consensus         2 i~a~nls~~~~-Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl   80 (259)
T COG4559           2 IRAENLSYSLA-GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL   80 (259)
T ss_pred             eeeeeeEEEee-cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence            57899999995 4889999999999999999999999999999999999999999999999999865 344556778999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHcc------CC
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPK--DLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIG------GS  151 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~------~p  151 (251)
                      ||+..+-+.+||+|-+.++..-++...  .+..+.++.+|...++..+..+...+|||||||||.+||.|++      ++
T Consensus        81 pQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~  160 (259)
T COG4559          81 PQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSG  160 (259)
T ss_pred             ccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCC
Confidence            999988666899999999765443222  2445568899999999999999999999999999999999976      45


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         152 RTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       152 ~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      ++|+||||||+||+..+..++++.+++. +|..|+.|-||++.+..|||||++|++|++++.|+|++.
T Consensus       161 r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~v  228 (259)
T COG4559         161 RWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDV  228 (259)
T ss_pred             ceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHh
Confidence            6999999999999999999999999995 699999999999999999999999999999999999754

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=100.00  E-value=3e-51  Score=346.57  Aligned_cols=198  Identities=24%  Similarity=0.334  Sum_probs=172.2

Q ss_pred             CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++|++++|++. +.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....++.|+|
T Consensus         7 l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   86 (207)
T cd03369           7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTI   86 (207)
T ss_pred             EEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence            5789999999642 479999999999999999999999999999999999999999999999998743 33445678999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE  158 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE  158 (251)
                      +||++.+++ .|++||+.++.   ....    +.+.++++       .++++.+|||||+||++|||||+.+|+++||||
T Consensus        87 v~q~~~~~~-~tv~~~l~~~~---~~~~----~~~~~~l~-------~~~~~~~LS~G~~qrv~laral~~~p~llllDE  151 (207)
T cd03369          87 IPQDPTLFS-GTIRSNLDPFD---EYSD----EEIYGALR-------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDE  151 (207)
T ss_pred             EecCCcccC-ccHHHHhcccC---CCCH----HHHHHHhh-------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence            999998887 59999997532   1111    22334443       356899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367         159 PTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  214 (251)
Q Consensus       159 Pt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~  214 (251)
                      ||++||+.+++.++++|+++.++.|+|++||+++++.. ||++++|++|+++..|+
T Consensus       152 P~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g~  206 (207)
T cd03369         152 ATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEVKEYDH  206 (207)
T ss_pred             CcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCEEEecCC
Confidence            99999999999999999998678999999999999976 99999999999988775

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=100.00  E-value=2.6e-51  Score=339.68  Aligned_cols=173  Identities=36%  Similarity=0.588  Sum_probs=160.2

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC---hHHhhcceE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD---MTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~---~~~~~~~i~   77 (251)
                      ++++|++++|++ +++++++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...   ...+++.++
T Consensus         1 i~~~~l~~~~~~-~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   79 (178)
T cd03229           1 LELKNVSKRYGQ-KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG   79 (178)
T ss_pred             CEEEEEEEEECC-eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence            579999999964 6799999999999999999999999999999999999999999999999987542   235567899


Q ss_pred             EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367          78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD  157 (251)
Q Consensus        78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD  157 (251)
                      |+||++.+++.+|++||+.+.                                  ||+|||||++|||||+.+|+++|||
T Consensus        80 ~~~q~~~~~~~~t~~~~l~~~----------------------------------lS~G~~qr~~la~al~~~p~llilD  125 (178)
T cd03229          80 MVFQDFALFPHLTVLENIALG----------------------------------LSGGQQQRVALARALAMDPDVLLLD  125 (178)
T ss_pred             EEecCCccCCCCCHHHheeec----------------------------------CCHHHHHHHHHHHHHHCCCCEEEEe
Confidence            999999999889999998653                                  9999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCE
Q psy7367         158 EPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGK  208 (251)
Q Consensus       158 EPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~  208 (251)
                      |||+|||+.++..++++|++++ + +.|+|++|||++++..+||++++|++|+
T Consensus       126 EP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~  178 (178)
T cd03229         126 EPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK  178 (178)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence            9999999999999999999985 4 7999999999999999999999999884

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=3.6e-51  Score=345.43  Aligned_cols=190  Identities=18%  Similarity=0.217  Sum_probs=167.1

Q ss_pred             CEEEeEEEEeCC---CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCeeEEEEcceeCCCChHHhhc
Q psy7367           1 MAIQNLSKRFPN---GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP---VSSGTAKIYNHDIRTDMTTIRR   74 (251)
Q Consensus         1 l~i~~l~~~y~~---~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~   74 (251)
                      +.++|++|.|+.   ++.+|+++||+|++||+++|+||||||||||+++|+|+++   |++|+|.++|.++.......++
T Consensus         4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~   83 (202)
T cd03233           4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPG   83 (202)
T ss_pred             EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcc
Confidence            468999999953   3579999999999999999999999999999999999999   8999999999988543334567


Q ss_pred             ceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEE
Q psy7367          75 SLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTV  154 (251)
Q Consensus        75 ~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ll  154 (251)
                      .++|+||++.+++.+||+||+.+.....                       .++++.+||+|||||++|||||+.+|+++
T Consensus        84 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----------------------~~~~~~~LS~Ge~qrl~laral~~~p~ll  140 (202)
T cd03233          84 EIIYVSEEDVHFPTLTVRETLDFALRCK-----------------------GNEFVRGISGGERKRVSIAEALVSRASVL  140 (202)
T ss_pred             eEEEEecccccCCCCcHHHHHhhhhhhc-----------------------cccchhhCCHHHHHHHHHHHHHhhCCCEE
Confidence            8999999999999999999998753211                       56788999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEE-EeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367         155 ILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVIL-TTHYMDEADLLGDRIAIIAAGKLQCCG  213 (251)
Q Consensus       155 llDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii-~tHd~~~~~~~~d~i~~l~~G~i~~~g  213 (251)
                      ||||||++||+.+++.++++|+++. + +.|+|+ ++|+.+++.++||++++|++|+++..|
T Consensus       141 llDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g  202 (202)
T cd03233         141 CWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG  202 (202)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence            9999999999999999999999985 4 666555 566678999999999999999998654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=100.00  E-value=2.5e-51  Score=339.63  Aligned_cols=177  Identities=27%  Similarity=0.480  Sum_probs=161.4

Q ss_pred             CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v   79 (251)
                      ++++|++++|++. +++++++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++......+++.++|+
T Consensus         1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~   80 (178)
T cd03247           1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL   80 (178)
T ss_pred             CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence            6899999999642 369999999999999999999999999999999999999999999999998743223456789999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP  159 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEP  159 (251)
                      ||++.+++ .|++||+                                  +.+||+|||||++||||++.+|+++|||||
T Consensus        81 ~q~~~~~~-~tv~~~i----------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP  125 (178)
T cd03247          81 NQRPYLFD-TTLRNNL----------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEP  125 (178)
T ss_pred             ccCCeeec-ccHHHhh----------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence            99998886 6999987                                  789999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367         160 TSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  213 (251)
Q Consensus       160 t~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g  213 (251)
                      |++||+.+++.+++.|+++.++.|||++||+++++. .||++++|++|++++.|
T Consensus       126 ~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~~~  178 (178)
T cd03247         126 TVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMDKILFLENGKIIMQG  178 (178)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEecC
Confidence            999999999999999999866899999999999996 69999999999998654

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=100.00  E-value=3.3e-51  Score=343.65  Aligned_cols=182  Identities=30%  Similarity=0.492  Sum_probs=165.0

Q ss_pred             CEEEeEEEEeCC-----CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCeeEEEEcceeCCCChHHhh
Q psy7367           1 MAIQNLSKRFPN-----GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML--PVSSGTAKIYNHDIRTDMTTIR   73 (251)
Q Consensus         1 l~i~~l~~~y~~-----~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~--~p~~G~i~~~g~~~~~~~~~~~   73 (251)
                      |+++|++++|++     .+++|+++||+|++||+++|+||||||||||+++|+|++  +|++|+|.++|+++..  ..++
T Consensus         4 l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~--~~~~   81 (194)
T cd03213           4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK--RSFR   81 (194)
T ss_pred             EEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch--Hhhh
Confidence            578999999964     267999999999999999999999999999999999999  9999999999998853  2456


Q ss_pred             cceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCE
Q psy7367          74 RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRT  153 (251)
Q Consensus        74 ~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~l  153 (251)
                      +.++|+||++.+++.+|++||+.+.....                             +||+|||||++|||||+.+|++
T Consensus        82 ~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-----------------------------~LS~G~~qrv~laral~~~p~i  132 (194)
T cd03213          82 KIIGYVPQDDILHPTLTVRETLMFAAKLR-----------------------------GLSGGERKRVSIALELVSNPSL  132 (194)
T ss_pred             heEEEccCcccCCCCCcHHHHHHHHHHhc-----------------------------cCCHHHHHHHHHHHHHHcCCCE
Confidence            78999999999999999999997643210                             8999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHH-HHHhhcCEEEEeeCCEEEeec
Q psy7367         154 VILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMD-EADLLGDRIAIIAAGKLQCCG  213 (251)
Q Consensus       154 lllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~-~~~~~~d~i~~l~~G~i~~~g  213 (251)
                      +||||||++||+.+++.++++|++++ +++|||++||+++ ++..+||++++|++|++++.|
T Consensus       133 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~  194 (194)
T cd03213         133 LFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG  194 (194)
T ss_pred             EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence            99999999999999999999999985 5999999999996 788899999999999997653

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=100.00  E-value=1.6e-51  Score=376.40  Aligned_cols=213  Identities=28%  Similarity=0.497  Sum_probs=197.5

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC--ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT--DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~~~i~~   78 (251)
                      +++++++|+|+ +..++++|||+|++|||++|+|.||||||||+++|.|+++|++|+|+++|+++.-  +.++.+..||+
T Consensus         5 l~~~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGM   83 (501)
T COG3845           5 LEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGM   83 (501)
T ss_pred             EEEeccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcE
Confidence            57899999997 5889999999999999999999999999999999999999999999999999853  45567889999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHh---cCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQL---KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI  155 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll  155 (251)
                      |+|++.|++.+||.||+.++..-   .....+..++++.++.+++||+-..++++.+||-||||||.|.+||.++|++||
T Consensus        84 VhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLI  163 (501)
T COG3845          84 VHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLI  163 (501)
T ss_pred             EeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEE
Confidence            99999999999999999997642   234667788899999999999988899999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367         156 LDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  214 (251)
Q Consensus       156 lDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~  214 (251)
                      |||||+-|-|...+.+++.+++++ +|+|||++||.++++.++|||+.+|+.|+++...+
T Consensus       164 LDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~  223 (501)
T COG3845         164 LDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD  223 (501)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence            999999999999999999999996 69999999999999999999999999999875544

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.8e-51  Score=389.87  Aligned_cols=215  Identities=24%  Similarity=0.333  Sum_probs=187.0

Q ss_pred             CEEEeEEEEeC--CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CeeEEEEcceeCCC-C-hHHhhcc
Q psy7367           1 MAIQNLSKRFP--NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-SSGTAKIYNHDIRT-D-MTTIRRS   75 (251)
Q Consensus         1 l~i~~l~~~y~--~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-~~G~i~~~g~~~~~-~-~~~~~~~   75 (251)
                      |+++|++++|+  +++.+|+++||+|++||+++|+||||||||||||+|+|+++| ++|+|+++|+++.. . ...++++
T Consensus       258 l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~  337 (500)
T TIGR02633       258 LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAG  337 (500)
T ss_pred             EEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence            47899999993  135699999999999999999999999999999999999985 89999999998853 2 2345678


Q ss_pred             eEEEccCC---CCCCCCCHHHHHHHHHH--hc---CCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHH
Q psy7367          76 LGVCPQYN---ALFDKLTVEEHMWFYSQ--LK---QVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMA  146 (251)
Q Consensus        76 i~~v~q~~---~l~~~ltv~e~l~~~~~--~~---~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~a  146 (251)
                      ++|+||++   .+++++||+||+.+...  ..   .......++++.++++.+++.. ..++++.+|||||||||+||||
T Consensus       338 i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~a  417 (500)
T TIGR02633       338 IAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKM  417 (500)
T ss_pred             CEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHH
Confidence            99999996   58889999999987531  11   1223334567889999999974 6799999999999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCH
Q psy7367         147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  215 (251)
Q Consensus       147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~  215 (251)
                      |+.+|++|||||||+|||+.+++.++++|.+++ +|.|||++|||++++.++|||+++|++|++++.++.
T Consensus       418 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~  487 (500)
T TIGR02633       418 LLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVN  487 (500)
T ss_pred             HhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcc
Confidence            999999999999999999999999999999985 589999999999999999999999999999987754

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=100.00  E-value=4.5e-51  Score=355.77  Aligned_cols=199  Identities=22%  Similarity=0.406  Sum_probs=176.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|          +..++|+|
T Consensus         5 l~~~~l~~~~~~-~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~----------~~~i~~v~   73 (251)
T PRK09544          5 VSLENVSVSFGQ-RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG----------KLRIGYVP   73 (251)
T ss_pred             EEEeceEEEECC-ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC----------ccCEEEec
Confidence            478999999964 6799999999999999999999999999999999999999999999976          23699999


Q ss_pred             cCCCCCCC--CCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367          81 QYNALFDK--LTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE  158 (251)
Q Consensus        81 q~~~l~~~--ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE  158 (251)
                      |++.+++.  .|+.+++.+..   +..    .+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||
T Consensus        74 q~~~~~~~l~~~~~~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE  146 (251)
T PRK09544         74 QKLYLDTTLPLTVNRFLRLRP---GTK----KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDE  146 (251)
T ss_pred             cccccccccChhHHHHHhccc---ccc----HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            99887765  37777765421   111    2457789999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         159 PTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       159 Pt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      ||+|||+.++..++++|+++. + |.|||++||+++++..+||++++|++ +++..|+++++
T Consensus       147 Pt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~  207 (251)
T PRK09544        147 PTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVV  207 (251)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHH
Confidence            999999999999999999984 4 89999999999999999999999965 78899988655

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=5e-51  Score=345.64  Aligned_cols=197  Identities=24%  Similarity=0.319  Sum_probs=175.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. . ..++.++|++
T Consensus         3 l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~-~~~~~~~~~~   79 (207)
T PRK13539          3 LEGEDLACVRGG-RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD-P-DVAEACHYLG   79 (207)
T ss_pred             EEEEeEEEEECC-eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc-h-hhHhhcEEec
Confidence            578999999964 679999999999999999999999999999999999999999999999988642 2 2667899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++.+|+.||+.+.....+..    .+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||
T Consensus        80 ~~~~~~~~~tv~~~l~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt  155 (207)
T PRK13539         80 HRNAMKPALTVAENLEFWAAFLGGE----ELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPT  155 (207)
T ss_pred             CCCcCCCCCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            9988888899999998865543322    235788999999988888999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367         161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAA  206 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~  206 (251)
                      +|||+.+++.++++|++++ +|.|||++||+++++..  |+++.+..
T Consensus       156 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~~~  200 (207)
T PRK13539        156 AALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARELDLGP  200 (207)
T ss_pred             ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEEeecC
Confidence            9999999999999999874 58999999999999986  88887754

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1e-52  Score=345.16  Aligned_cols=217  Identities=25%  Similarity=0.371  Sum_probs=202.5

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      ++++|++|+|+ ++.+++++|++|++|.+++++|||||||||||.+++.|+++++|+|+++|.++.. +.+++.++++.+
T Consensus         2 I~i~nv~K~y~-~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL   80 (252)
T COG4604           2 ITIENVSKSYG-TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSIL   80 (252)
T ss_pred             eeehhhhHhhC-CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHH
Confidence            57899999996 5899999999999999999999999999999999999999999999999999965 566788899999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHh--cCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQL--KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD  157 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD  157 (251)
                      -|++.+-..+||+|-+.|+..-  .+....+.+..+.++++.++|++..+++..+||||||||..||..++++.++++||
T Consensus        81 kQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLD  160 (252)
T COG4604          81 KQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLD  160 (252)
T ss_pred             HhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEec
Confidence            9999998899999999986432  35566777888999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         158 EPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       158 EPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      ||.++||-+....+++.|+++. + |+||++|-||++++..++|+|+-|++|+++..|+|+++
T Consensus       161 EPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~ei  223 (252)
T COG4604         161 EPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEI  223 (252)
T ss_pred             CcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHh
Confidence            9999999999999999999985 4 99999999999999999999999999999999999765

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=4.2e-51  Score=344.24  Aligned_cols=195  Identities=20%  Similarity=0.315  Sum_probs=174.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++......++++++|+|
T Consensus         2 l~~~~l~~~~~~-~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~   80 (200)
T PRK13540          2 LDVIELDFDYHD-QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG   80 (200)
T ss_pred             EEEEEEEEEeCC-eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence            578999999964 6799999999999999999999999999999999999999999999999988544445678899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++.+||.||+.+.....   ..  ...+.++++.+++.+..++++.+||+||+||++||||++.+|++|||||||
T Consensus        81 q~~~~~~~~tv~~~~~~~~~~~---~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~  155 (200)
T PRK13540         81 HRSGINPYLTLRENCLYDIHFS---PG--AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPL  155 (200)
T ss_pred             cccccCcCCCHHHHHHHHHhcC---cc--hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            9999988899999998864321   11  246788999999988888899999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEE
Q psy7367         161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIA  202 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~  202 (251)
                      ++||+.+++.+.++|++++ +|.|||++||+.+.+.. ||...
T Consensus       156 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d~~~  197 (200)
T PRK13540        156 VALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-ADYEE  197 (200)
T ss_pred             cccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cchhh
Confidence            9999999999999999985 58999999999998865 88654

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=100.00  E-value=4.7e-51  Score=356.60  Aligned_cols=215  Identities=22%  Similarity=0.302  Sum_probs=182.5

Q ss_pred             CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++|++++|++. +.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++.. ....+++.++|
T Consensus        20 i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~   99 (257)
T cd03288          20 IKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSI   99 (257)
T ss_pred             EEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEE
Confidence            5789999999642 479999999999999999999999999999999999999999999999998854 33456788999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHH-----HHHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQ-----LEISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGS  151 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p  151 (251)
                      +||++.+++ .|++||+.....   .......     ..+.++++.+  +++...++++.+||+||+||++|||||+.+|
T Consensus       100 v~q~~~l~~-~tv~~nl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p  175 (257)
T cd03288         100 ILQDPILFS-GSIRFNLDPECK---CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS  175 (257)
T ss_pred             ECCCCcccc-cHHHHhcCcCCC---CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence            999998887 499999864211   1111111     1234455555  6666677788999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         152 RTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       152 ~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      ++|||||||+|||+.+++.+++++.++.++.|||++||+++++.. |||+++|++|+++..|+++.+..
T Consensus       176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~~g~~~~~~~  243 (257)
T cd03288         176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLLA  243 (257)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-CCEEEEEECCEEEEeCCHHHHHh
Confidence            999999999999999999999999988778999999999999986 99999999999999999876643

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=4.4e-51  Score=393.95  Aligned_cols=215  Identities=25%  Similarity=0.365  Sum_probs=182.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      ++++|+++.|.+++++|+|+||+|++|+.++|+||||||||||+++|+|++ |++|+|.++|.++.. +...+|++|+||
T Consensus       350 i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v  428 (588)
T PRK11174        350 IEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWV  428 (588)
T ss_pred             EEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEe
Confidence            478999976644578999999999999999999999999999999999999 999999999999965 556788999999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHH-----HHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR  152 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~  152 (251)
                      ||++.+|+. |++||+.++..  ..+.++..+.     +.+.++.+  |++.........||||||||++|||||+++|+
T Consensus       429 ~Q~~~LF~~-TI~eNI~~g~~--~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~  505 (588)
T PRK11174        429 GQNPQLPHG-TLRDNVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQ  505 (588)
T ss_pred             cCCCcCCCc-CHHHHhhcCCC--CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            999999986 99999988631  2233222211     22233333  44444445567899999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         153 TVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       153 llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      +||||||||+||+.+.+.+.+.|.++.+++|+|++||+++.+. .||+|++|++|++++.|+.+++.+
T Consensus       506 IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~-~aD~Iivl~~G~i~e~G~~~eL~~  572 (588)
T PRK11174        506 LLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLA-QWDQIWVMQDGQIVQQGDYAELSQ  572 (588)
T ss_pred             EEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHH-hCCEEEEEeCCeEeecCCHHHHHh
Confidence            9999999999999999999999999888999999999998886 499999999999999999887754

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=8.8e-51  Score=340.45  Aligned_cols=181  Identities=27%  Similarity=0.384  Sum_probs=162.9

Q ss_pred             CEEEeEEEEeCC---CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCeeEEEEcceeCCCChHHhhcc
Q psy7367           1 MAIQNLSKRFPN---GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML--PVSSGTAKIYNHDIRTDMTTIRRS   75 (251)
Q Consensus         1 l~i~~l~~~y~~---~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~--~p~~G~i~~~g~~~~~~~~~~~~~   75 (251)
                      |+++|+++.|++   ++++|+++||+|++||+++|+||||||||||+++|+|+.  +|++|+|.++|+++.   ..+++.
T Consensus         4 l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~---~~~~~~   80 (192)
T cd03232           4 LTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD---KNFQRS   80 (192)
T ss_pred             EEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH---HHhhhc
Confidence            578999999963   257999999999999999999999999999999999986  489999999999874   345678


Q ss_pred             eEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367          76 LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI  155 (251)
Q Consensus        76 i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll  155 (251)
                      ++|++|++.+++.+|++||+.+....                +             +|||||+||++|||||+.+|+++|
T Consensus        81 i~~~~q~~~~~~~~tv~~~l~~~~~~----------------~-------------~LSgGe~qrv~la~al~~~p~vll  131 (192)
T cd03232          81 TGYVEQQDVHSPNLTVREALRFSALL----------------R-------------GLSVEQRKRLTIGVELAAKPSILF  131 (192)
T ss_pred             eEEecccCccccCCcHHHHHHHHHHH----------------h-------------cCCHHHhHHHHHHHHHhcCCcEEE
Confidence            99999999999999999999874211                0             899999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHH-HHHhhcCEEEEeeC-CEEEeec
Q psy7367         156 LDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMD-EADLLGDRIAIIAA-GKLQCCG  213 (251)
Q Consensus       156 lDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~-~~~~~~d~i~~l~~-G~i~~~g  213 (251)
                      |||||++||+.++..+++.+++++ +|.|||++||+++ ++..+||++++|++ |++++.|
T Consensus       132 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g  192 (192)
T cd03232         132 LDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG  192 (192)
T ss_pred             EeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence            999999999999999999999985 4899999999998 47889999999999 9998754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=100.00  E-value=3.8e-51  Score=341.63  Aligned_cols=180  Identities=27%  Similarity=0.433  Sum_probs=159.1

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC---ChHHhhcceEEEccCCC--CCC
Q psy7367          13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT---DMTTIRRSLGVCPQYNA--LFD   87 (251)
Q Consensus        13 ~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~~~i~~v~q~~~--l~~   87 (251)
                      ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..   ....+++.++|+||++.  ++ 
T Consensus         4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-   82 (190)
T TIGR01166         4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF-   82 (190)
T ss_pred             ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc-
Confidence            4679999999999999999999999999999999999999999999999998742   12345678999999973  45 


Q ss_pred             CCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q psy7367          88 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS  167 (251)
Q Consensus        88 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~  167 (251)
                      .+|++||+.+.....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+|||+.+
T Consensus        83 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~  162 (190)
T TIGR01166        83 AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAG  162 (190)
T ss_pred             cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence            47999999886544444444455678899999999988999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh-CCCeEEEEeCCHHH
Q psy7367         168 RRSIWELLIKYK-KGRTVILTTHYMDE  193 (251)
Q Consensus       168 ~~~l~~~l~~l~-~g~tiii~tHd~~~  193 (251)
                      ++.+.++|++++ +|.|||++|||+++
T Consensus       163 ~~~~~~~l~~~~~~~~tili~sH~~~~  189 (190)
T TIGR01166       163 REQMLAILRRLRAEGMTVVISTHDVDL  189 (190)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeecccc
Confidence            999999999985 58999999999875

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=100.00  E-value=1e-50  Score=334.62  Aligned_cols=170  Identities=28%  Similarity=0.531  Sum_probs=156.1

Q ss_pred             CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++|++++|++. +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+++.++|
T Consensus         1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (173)
T cd03246           1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY   80 (173)
T ss_pred             CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence            5799999999632 469999999999999999999999999999999999999999999999998854 33455678999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE  158 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE  158 (251)
                      ++|++.+++. |++||+                                     ||||||||++|||||+.+|+++||||
T Consensus        81 ~~q~~~~~~~-tv~~~l-------------------------------------LS~G~~qrv~la~al~~~p~~lllDE  122 (173)
T cd03246          81 LPQDDELFSG-SIAENI-------------------------------------LSGGQRQRLGLARALYGNPRILVLDE  122 (173)
T ss_pred             ECCCCccccC-cHHHHC-------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence            9999988874 999998                                     99999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEE
Q psy7367         159 PTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKL  209 (251)
Q Consensus       159 Pt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i  209 (251)
                      ||++||+.++..++++|++++ +|+|||++|||++++. +||++++|++|++
T Consensus       123 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~v~~l~~G~i  173 (173)
T cd03246         123 PNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-SADRILVLEDGRV  173 (173)
T ss_pred             CccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEEECCCC
Confidence            999999999999999999985 5899999999999985 7999999999874

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=1.3e-50  Score=336.69  Aligned_cols=172  Identities=30%  Similarity=0.455  Sum_probs=157.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC--hHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD--MTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~~~i~~   78 (251)
                      ++++|++++|     +|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...  ....++.++|
T Consensus         5 l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (182)
T cd03215           5 LEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAY   79 (182)
T ss_pred             EEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEE
Confidence            4789999988     89999999999999999999999999999999999999999999999988542  2345678999


Q ss_pred             EccCC---CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367          79 CPQYN---ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI  155 (251)
Q Consensus        79 v~q~~---~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll  155 (251)
                      +||++   .+++.+|++||+.++..                                ||+|||||++|||||+.+|+++|
T Consensus        80 ~~q~~~~~~~~~~~t~~e~l~~~~~--------------------------------LS~G~~qrl~la~al~~~p~lll  127 (182)
T cd03215          80 VPEDRKREGLVLDLSVAENIALSSL--------------------------------LSGGNQQKVVLARWLARDPRVLI  127 (182)
T ss_pred             ecCCcccCcccCCCcHHHHHHHHhh--------------------------------cCHHHHHHHHHHHHHccCCCEEE
Confidence            99985   57888999999977421                                99999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEE
Q psy7367         156 LDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKL  209 (251)
Q Consensus       156 lDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i  209 (251)
                      |||||++||+.+++.+.+++++++ ++.|||++||+++++.++||++++|++|++
T Consensus       128 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i  182 (182)
T cd03215         128 LDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI  182 (182)
T ss_pred             ECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence            999999999999999999999985 589999999999999999999999999974

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=6.7e-50  Score=350.77  Aligned_cols=209  Identities=20%  Similarity=0.269  Sum_probs=184.9

Q ss_pred             CEEEeEEEEeCC-------------------CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEc
Q psy7367           1 MAIQNLSKRFPN-------------------GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY   61 (251)
Q Consensus         1 l~i~~l~~~y~~-------------------~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~   61 (251)
                      ++++||+|.|..                   .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~   84 (264)
T PRK13546          5 VNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRN   84 (264)
T ss_pred             EEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEC
Confidence            467888887732                   1248999999999999999999999999999999999999999999998


Q ss_pred             ceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHH
Q psy7367          62 NHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKL  141 (251)
Q Consensus        62 g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv  141 (251)
                      |.            +++++|.+.+++.+|+.||+.+.....+....+..+.+..+++.+++.+..++++.+||+||+||+
T Consensus        85 g~------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv  152 (264)
T PRK13546         85 GE------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKL  152 (264)
T ss_pred             CE------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHH
Confidence            84            457778877788899999998765544444455555677889999999999999999999999999


Q ss_pred             HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         142 SVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       142 ~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      +||+||+.+|++|||||||+|||+.+++.+++.|.+++ +|.|||++||+++++..+||++++|++|++++.|+++++..
T Consensus       153 ~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~  232 (264)
T PRK13546        153 GFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLP  232 (264)
T ss_pred             HHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence            99999999999999999999999999999999999985 58999999999999999999999999999999999877655


Q ss_pred             h
Q psy7367         221 S  221 (251)
Q Consensus       221 ~  221 (251)
                      .
T Consensus       233 ~  233 (264)
T PRK13546        233 K  233 (264)
T ss_pred             H
Confidence            4

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=100.00  E-value=7e-51  Score=337.68  Aligned_cols=176  Identities=29%  Similarity=0.481  Sum_probs=162.0

Q ss_pred             EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEEc
Q psy7367           2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCP   80 (251)
Q Consensus         2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v~   80 (251)
                      +++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ....+++.++|+|
T Consensus         1 ~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~   79 (180)
T cd03214           1 EVENLSVGYGG-RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVP   79 (180)
T ss_pred             CeeEEEEEECC-eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHH
Confidence            57999999964 679999999999999999999999999999999999999999999999998854 3344566799999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |                                  +++.+++.+..++++.+||+|||||++|||||+.+|+++||||||
T Consensus        80 q----------------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~  125 (180)
T cd03214          80 Q----------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPT  125 (180)
T ss_pred             H----------------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            8                                  677888888888899999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEee
Q psy7367         161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  212 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~  212 (251)
                      ++||+.+++.+.++|.+++ + +.|||++||+++++.++||++++|++|+++..
T Consensus       126 ~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~  179 (180)
T cd03214         126 SHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ  179 (180)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence            9999999999999999985 4 89999999999999999999999999999754

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=100.00  E-value=4.7e-51  Score=396.94  Aligned_cols=213  Identities=25%  Similarity=0.402  Sum_probs=186.4

Q ss_pred             CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++|++++|+.. ..+|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|++||.|+.. +...+|++|||
T Consensus       472 I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~  551 (709)
T COG2274         472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGY  551 (709)
T ss_pred             EEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeE
Confidence            5789999999654 469999999999999999999999999999999999999999999999999965 66788999999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHc-----------CCCcccCCCCCcCChhHHHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL-----------GIPHKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      |+|++.+|.. |++||+.++....  +.    +++.++++..           |++.........||||||||++|||||
T Consensus       552 V~Q~~~Lf~g-SI~eNi~l~~p~~--~~----e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaL  624 (709)
T COG2274         552 VLQDPFLFSG-SIRENIALGNPEA--TD----EEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARAL  624 (709)
T ss_pred             EcccchhhcC-cHHHHHhcCCCCC--CH----HHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHh
Confidence            9999999986 9999999854321  11    2233333333           344444556678999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      +++|++||||||||+||+.+.+.+.+.|.++.+|+|+|++||.+..+. .||||++|++|+++++|+.+++.+.
T Consensus       625 l~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv~~gs~~ell~~  697 (709)
T COG2274         625 LSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR-SADRIIVLDQGKIVEQGSHEELLAQ  697 (709)
T ss_pred             ccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh-hccEEEEccCCceeccCCHHHHHHh
Confidence            999999999999999999999999999999999999999999999997 5999999999999999999887665

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=100.00  E-value=3.5e-50  Score=338.83  Aligned_cols=184  Identities=24%  Similarity=0.415  Sum_probs=165.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCC--CCCCeeEEEEcceeCCCC-hHH-hhcce
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM--LPVSSGTAKIYNHDIRTD-MTT-IRRSL   76 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl--~~p~~G~i~~~g~~~~~~-~~~-~~~~i   76 (251)
                      ++++|++++|+ ++.+++|+||++++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++... ... .+..+
T Consensus         1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i   79 (200)
T cd03217           1 LEIKDLHVSVG-GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI   79 (200)
T ss_pred             CeEEEEEEEeC-CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence            57999999996 46899999999999999999999999999999999999  579999999999998642 222 24569


Q ss_pred             EEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367          77 GVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL  156 (251)
Q Consensus        77 ~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll  156 (251)
                      +|+||++.+++.+++++++                               ++.+.+||+||+||++|||||+.+|+++||
T Consensus        80 ~~v~q~~~~~~~~~~~~~l-------------------------------~~~~~~LS~G~~qrv~laral~~~p~illl  128 (200)
T cd03217          80 FLAFQYPPEIPGVKNADFL-------------------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAIL  128 (200)
T ss_pred             EEeecChhhccCccHHHHH-------------------------------hhccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            9999999999988988776                               112368999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHh-hcCEEEEeeCCEEEeecCHH
Q psy7367         157 DEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADL-LGDRIAIIAAGKLQCCGSSV  216 (251)
Q Consensus       157 DEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~-~~d~i~~l~~G~i~~~g~~~  216 (251)
                      ||||++||+.++..++++|++++ ++.|||++||+++.+.. +||++++|++|++++.|+.+
T Consensus       129 DEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~  190 (200)
T cd03217         129 DEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE  190 (200)
T ss_pred             eCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH
Confidence            99999999999999999999985 48999999999999988 79999999999999998654

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.3e-51  Score=379.10  Aligned_cols=211  Identities=29%  Similarity=0.478  Sum_probs=187.7

Q ss_pred             EEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEEcc
Q psy7367           3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQ   81 (251)
Q Consensus         3 i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v~q   81 (251)
                      .+|+++.|++++++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+||.+... ....+|++++||+|
T Consensus       323 ~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q  402 (559)
T COG4988         323 LENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQ  402 (559)
T ss_pred             ecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCC
Confidence            45999999876789999999999999999999999999999999999999999999999999865 55678999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCC------CC----CcCChhHHHHHHHHHHHccCC
Q psy7367          82 YNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTS------LA----NTLSGGMQRKLSVAMAFIGGS  151 (251)
Q Consensus        82 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~------~~----~~LSgG~kqrv~ia~al~~~p  151 (251)
                      +|.+|+. |++||+.++..-  .    .++.+.+++++.++.+..++      .+    ..|||||+|||++||||+.++
T Consensus       403 ~p~lf~g-TireNi~l~~~~--~----s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~  475 (559)
T COG4988         403 NPYLFAG-TIRENILLARPD--A----SDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPA  475 (559)
T ss_pred             CCccccc-cHHHHhhccCCc--C----CHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence            9999987 999999886321  1    23457777888777654443      23    349999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         152 RTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       152 ~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      +++||||||++||.++.+.+.+.|.++.+++|++++||++..+.. ||+|++|++|++++.|+++++.++
T Consensus       476 ~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~-~D~I~vld~G~l~~~g~~~~L~~~  544 (559)
T COG4988         476 SLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGRLVEQGTHEELSEK  544 (559)
T ss_pred             CEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhc-CCEEEEecCCceeccCCHHHHhhc
Confidence            999999999999999999999999999989999999999999986 999999999999999999887544

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.1e-50  Score=395.59  Aligned_cols=209  Identities=24%  Similarity=0.360  Sum_probs=183.2

Q ss_pred             CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++||+++|++ ++++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|+++.. +...+|++|||
T Consensus       452 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~  531 (686)
T TIGR03797       452 IEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGV  531 (686)
T ss_pred             EEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEE
Confidence            478999999953 4679999999999999999999999999999999999999999999999999965 56678999999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCccc-----------CCCCCcCChhHHHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKR-----------TSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~kqrv~ia~al  147 (251)
                      |||++.+|+. |++||+.++..   .+.    +++.++++..++.+..           ......||||||||++|||||
T Consensus       532 v~Q~~~lf~g-TI~eNi~~~~~---~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAl  603 (686)
T TIGR03797       532 VLQNGRLMSG-SIFENIAGGAP---LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARAL  603 (686)
T ss_pred             EccCCccCcc-cHHHHHhcCCC---CCH----HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence            9999999986 99999988532   222    3456667776665433           233467999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      +++|++||||||||+||+.+.+.+.+.|+++  ++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+
T Consensus       604 l~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~-~D~Iivl~~G~iv~~G~~~~Ll~  673 (686)
T TIGR03797       604 VRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQGTYDELMA  673 (686)
T ss_pred             hcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHc-CCEEEEEECCEEEEECCHHHHHh
Confidence            9999999999999999999999999999887  5899999999999875 99999999999999999887754

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=100.00  E-value=1.3e-50  Score=390.19  Aligned_cols=214  Identities=22%  Similarity=0.376  Sum_probs=183.2

Q ss_pred             CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++|++++|++ ++++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|+++|.++.. ....+++.|+|
T Consensus       342 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~  421 (582)
T PRK11176        342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVAL  421 (582)
T ss_pred             EEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceE
Confidence            578999999964 3679999999999999999999999999999999999999999999999999864 45567889999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCcCChhHHHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----------KRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      +||++.+|+. |++||+.++.. .....    +++.++++..++.+           .......+||||||||++|||||
T Consensus       422 v~Q~~~lf~~-Ti~~Ni~~~~~-~~~~~----~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARal  495 (582)
T PRK11176        422 VSQNVHLFND-TIANNIAYART-EQYSR----EQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARAL  495 (582)
T ss_pred             EccCceeecc-hHHHHHhcCCC-CCCCH----HHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHH
Confidence            9999999985 99999987521 11122    34555566555432           23333467999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      +++|+++|||||||+||+.+...+++.|.++.+++|+|+|||+++.+. .||+|++|++|++++.|+.+++.+.
T Consensus       496 l~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~e~g~~~~l~~~  568 (582)
T PRK11176        496 LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-KADEILVVEDGEIVERGTHAELLAQ  568 (582)
T ss_pred             HhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEEeCCHHHHHhC
Confidence            999999999999999999999999999999877899999999998876 5999999999999999998877543

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=100.00  E-value=3.1e-50  Score=331.23  Aligned_cols=169  Identities=30%  Similarity=0.530  Sum_probs=155.5

Q ss_pred             CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++|++++|++. ..+++++||+|++|++++|+||||||||||+++|+|+++|++|+|+++|+++.. ....+++.++|
T Consensus         1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (171)
T cd03228           1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY   80 (171)
T ss_pred             CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence            5899999999642 279999999999999999999999999999999999999999999999998753 33455678999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE  158 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE  158 (251)
                      +||++.+++ .|++||+                                     ||+|||||++|||||+.+|+++||||
T Consensus        81 ~~~~~~~~~-~t~~e~l-------------------------------------LS~G~~~rl~la~al~~~p~llllDE  122 (171)
T cd03228          81 VPQDPFLFS-GTIRENI-------------------------------------LSGGQRQRIAIARALLRDPPILILDE  122 (171)
T ss_pred             EcCCchhcc-chHHHHh-------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence            999998876 5999997                                     99999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCE
Q psy7367         159 PTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGK  208 (251)
Q Consensus       159 Pt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~  208 (251)
                      ||+|||+.++..+.++|+++.+++|||++|||++++.. ||++++|++|+
T Consensus       123 P~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~~~~l~~g~  171 (171)
T cd03228         123 ATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD-ADRIIVLDDGR  171 (171)
T ss_pred             CCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence            99999999999999999998768999999999999987 99999999884

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=2.3e-50  Score=382.53  Aligned_cols=211  Identities=26%  Similarity=0.392  Sum_probs=182.8

Q ss_pred             EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-h-HHhhcceEEE
Q psy7367           2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-M-TTIRRSLGVC   79 (251)
Q Consensus         2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~-~~~~~~i~~v   79 (251)
                      +++|+++      .+|+++||+|.+||+++|+||||||||||+|+|+|+++|++|+|+++|+++... . ..+++++||+
T Consensus       259 ~~~~l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v  332 (501)
T PRK10762        259 KVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYI  332 (501)
T ss_pred             EEeCccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEe
Confidence            4566653      369999999999999999999999999999999999999999999999988532 2 2346789999


Q ss_pred             ccCC---CCCCCCCHHHHHHHHHH--hc---C-CChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHcc
Q psy7367          80 PQYN---ALFDKLTVEEHMWFYSQ--LK---Q-VPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIG  149 (251)
Q Consensus        80 ~q~~---~l~~~ltv~e~l~~~~~--~~---~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~  149 (251)
                      ||++   .+++.+||.||+.+...  ..   + ....+..++++++++.+++. +..++++.+|||||||||+|||||+.
T Consensus       333 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~  412 (501)
T PRK10762        333 SEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMT  412 (501)
T ss_pred             cCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhh
Confidence            9996   57888999999987431  11   1 12233455788999999995 67899999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         150 GSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      +|++|||||||+|||+.+++.++++|+++. +|.|||++|||++++..+||++++|++|+++..++++.+
T Consensus       413 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~  482 (501)
T PRK10762        413 RPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA  482 (501)
T ss_pred             CCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence            999999999999999999999999999985 599999999999999999999999999999988876543

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-49  Score=373.12  Aligned_cols=208  Identities=20%  Similarity=0.270  Sum_probs=181.9

Q ss_pred             CEEEeEEEEeCCC--cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNG--KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~--~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~   78 (251)
                      ++++||+++|+++  +.+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|+++|.+.            +
T Consensus        22 L~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------~   89 (549)
T PRK13545         22 DKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------L   89 (549)
T ss_pred             eEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------e
Confidence            3577888887543  4699999999999999999999999999999999999999999999999652            1


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE  158 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE  158 (251)
                      +.+.+.+++.+|++||+.+.....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||
T Consensus        90 i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDE  169 (549)
T PRK13545         90 IAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDE  169 (549)
T ss_pred             EEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            22244566778999999886554444455555678889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         159 PTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       159 Pt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      ||+|||+.++..+++.|++++ +|.|||++|||++++..+||++++|++|++++.|+++++..
T Consensus       170 PTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~  232 (549)
T PRK13545        170 ALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD  232 (549)
T ss_pred             CcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            999999999999999999985 58999999999999999999999999999999998876544

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=6.4e-50  Score=386.24  Aligned_cols=212  Identities=19%  Similarity=0.351  Sum_probs=185.8

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      ++++|++++|++++++|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|.++|.++.. +...++++|+|+
T Consensus       341 i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v  420 (592)
T PRK10790        341 IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMV  420 (592)
T ss_pred             EEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEE
Confidence            5789999999654679999999999999999999999999999999999999999999999999965 556788999999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----------KRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      ||++.+|++ |++||+.++.   ....    +++.++++.+|+.+           ........||||||||++|||||+
T Consensus       421 ~Q~~~lF~~-Ti~~NI~~~~---~~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl  492 (592)
T PRK10790        421 QQDPVVLAD-TFLANVTLGR---DISE----EQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLV  492 (592)
T ss_pred             ccCCccccc-hHHHHHHhCC---CCCH----HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence            999999987 9999999863   2222    34566666666543           233345679999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      .+|+++|||||||+||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+.+++.+.
T Consensus       493 ~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~-~~D~ii~l~~G~i~~~G~~~~L~~~  564 (592)
T PRK10790        493 QTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIV-EADTILVLHRGQAVEQGTHQQLLAA  564 (592)
T ss_pred             hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEEEcCHHHHHhC
Confidence            99999999999999999999999999999877899999999998887 4999999999999999999877543

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-50  Score=383.00  Aligned_cols=211  Identities=19%  Similarity=0.324  Sum_probs=182.4

Q ss_pred             EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC--hHHhhcceEEE
Q psy7367           2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD--MTTIRRSLGVC   79 (251)
Q Consensus         2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~~~i~~v   79 (251)
                      +++|++  +   +.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...  ....+++++|+
T Consensus       259 ~~~~~~--~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~  333 (501)
T PRK11288        259 RLDGLK--G---PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLC  333 (501)
T ss_pred             EEeccc--c---CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEc
Confidence            456665  2   2489999999999999999999999999999999999999999999999987532  23446789999


Q ss_pred             ccCC---CCCCCCCHHHHHHHHHHhc----C--CChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHcc
Q psy7367          80 PQYN---ALFDKLTVEEHMWFYSQLK----Q--VPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIG  149 (251)
Q Consensus        80 ~q~~---~l~~~ltv~e~l~~~~~~~----~--~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~  149 (251)
                      ||++   .+++.+|+.||+.+.....    +  ......++.+.++++.+++. +..++++.+|||||||||+||+||+.
T Consensus       334 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~  413 (501)
T PRK11288        334 PEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSE  413 (501)
T ss_pred             CcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHcc
Confidence            9996   4888899999998743211    1  12223345688999999994 67899999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHH
Q psy7367         150 GSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  217 (251)
Q Consensus       150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~  217 (251)
                      +|++|||||||+|||+.+++.++++|.+++ +|.|||++|||++++..+||++++|++|++++.|++++
T Consensus       414 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~  482 (501)
T PRK11288        414 DMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ  482 (501)
T ss_pred             CCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcccc
Confidence            999999999999999999999999999985 58999999999999999999999999999999987653

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=3.4e-50  Score=386.98  Aligned_cols=213  Identities=24%  Similarity=0.437  Sum_probs=188.9

Q ss_pred             CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. +...+|+.|+|
T Consensus       339 i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~  418 (574)
T PRK11160        339 LTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISV  418 (574)
T ss_pred             EEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeE
Confidence            5789999999643 569999999999999999999999999999999999999999999999999865 55678899999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCC----------CCCcCChhHHHHHHHHHHHc
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTS----------LANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~LSgG~kqrv~ia~al~  148 (251)
                      +||++.+|+. |++||+.++..  ..    ..+++.++++.+++.+..++          ....||||||||++|||||+
T Consensus       419 v~Q~~~lf~~-ti~~Ni~~~~~--~~----~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall  491 (574)
T PRK11160        419 VSQRVHLFSA-TLRDNLLLAAP--NA----SDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALL  491 (574)
T ss_pred             Ecccchhhcc-cHHHHhhcCCC--cc----CHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHh
Confidence            9999999985 99999988532  11    23457788888888766544          45679999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      ++|+++||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus       492 ~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  563 (574)
T PRK11160        492 HDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ-FDRICVMDNGQIIEQGTHQELLAQ  563 (574)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh-CCEEEEEeCCeEEEeCCHHHHHhc
Confidence            999999999999999999999999999998889999999999999865 999999999999999998876543

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=100.00  E-value=7.2e-50  Score=384.20  Aligned_cols=217  Identities=25%  Similarity=0.399  Sum_probs=189.2

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      ++++|++++|++++++|+|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||.++.. +...+|++|+||
T Consensus       329 I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V  408 (567)
T COG1132         329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIV  408 (567)
T ss_pred             EEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEE
Confidence            5789999999745789999999999999999999999999999999999999999999999999975 567889999999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHH-----HHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR  152 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~  152 (251)
                      ||++.+|. -|++||+.++..-  .+.++..+.     +.+.++.+  |++.........||||||||++||||++.+|+
T Consensus       409 ~Qd~~LF~-~TI~~NI~~g~~~--at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~  485 (567)
T COG1132         409 SQDPLLFS-GTIRENIALGRPD--ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPP  485 (567)
T ss_pred             cccceeec-ccHHHHHhcCCCC--CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence            99999998 5999999986432  223333322     23334444  55555555667999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         153 TVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       153 llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      +++||||||+||+.+...+.+.+.++.+++|+|+++|.+..+.. ||+|++|++|++++.|+++++...
T Consensus       486 ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~G~h~eLl~~  553 (567)
T COG1132         486 ILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVERGTHEELLAK  553 (567)
T ss_pred             EEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEEEEECCEEEEecCHHHHHHc
Confidence            99999999999999999999999988788899999999999987 999999999999999999887654

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=100.00  E-value=9.7e-50  Score=336.65  Aligned_cols=191  Identities=23%  Similarity=0.375  Sum_probs=160.2

Q ss_pred             CEEEeEEEEeCCC----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcce
Q psy7367           1 MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSL   76 (251)
Q Consensus         1 l~i~~l~~~y~~~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i   76 (251)
                      ++++||+++|++.    +++|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|            +|
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g------------~i   68 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------------SI   68 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC------------EE
Confidence            6899999999643    3699999999999999999999999999999999999999999999988            59


Q ss_pred             EEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHH-----HHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHcc
Q psy7367          77 GVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIG  149 (251)
Q Consensus        77 ~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~  149 (251)
                      +|+||++.+++ .|++||+.+....   ......+.     +.+.+..+  ++....++++.+||+|||||++|||||+.
T Consensus        69 ~~~~q~~~l~~-~t~~enl~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~  144 (204)
T cd03250          69 AYVSQEPWIQN-GTIRENILFGKPF---DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYS  144 (204)
T ss_pred             EEEecCchhcc-CcHHHHhccCCCc---CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence            99999999885 6999999885332   11111111     11222222  34445667789999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHH-HHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCE
Q psy7367         150 GSRTVILDEPTSGVDPYSRRSIWE-LLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGK  208 (251)
Q Consensus       150 ~p~llllDEPt~gLD~~~~~~l~~-~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~  208 (251)
                      +|+++||||||++||+.+++.+++ ++.++. +|.|||++||+++.+.. ||++++|++|+
T Consensus       145 ~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~G~  204 (204)
T cd03250         145 DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR  204 (204)
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence            999999999999999999999998 456664 58999999999999998 99999999984

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=100.00  E-value=1.3e-49  Score=391.37  Aligned_cols=210  Identities=22%  Similarity=0.348  Sum_probs=181.5

Q ss_pred             CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++|++++|++ ++++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|.++.. +...+|++|+|
T Consensus       478 I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~  557 (710)
T TIGR03796       478 VELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAM  557 (710)
T ss_pred             EEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeE
Confidence            478999999964 3679999999999999999999999999999999999999999999999999864 55678999999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC-----------CcccCCCCCcCChhHHHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI-----------PHKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      |||++.+|+. |++||+.++..  ..+.    +++.++++..++           +.........||||||||++|||||
T Consensus       558 v~Q~~~lf~g-Ti~eNi~l~~~--~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARal  630 (710)
T TIGR03796       558 VDQDIFLFEG-TVRDNLTLWDP--TIPD----ADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARAL  630 (710)
T ss_pred             EecCChhhhc-cHHHHhhCCCC--CCCH----HHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHH
Confidence            9999999975 99999987521  1222    234455555544           3333445578999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      +++|++||||||||+||+.+.+.+++.|++  .++|+|++||+++.+.. ||||++|++|++++.|+.+++.+
T Consensus       631 l~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~~G~~~~Ll~  700 (710)
T TIGR03796       631 VRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQRGTHEELWA  700 (710)
T ss_pred             hhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHh-CCEEEEEeCCEEEEecCHHHHHH
Confidence            999999999999999999999999999986  48999999999999875 99999999999999999987754

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=100.00  E-value=6.5e-50  Score=392.59  Aligned_cols=213  Identities=25%  Similarity=0.425  Sum_probs=184.5

Q ss_pred             CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++|++++|++ .+++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|.++.. +...+|+.|+|
T Consensus       464 I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~  543 (694)
T TIGR03375       464 IEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGY  543 (694)
T ss_pred             EEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEE
Confidence            478999999963 3579999999999999999999999999999999999999999999999999865 55678999999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-----------cccCCCCCcCChhHHHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-----------HKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      |||++.+|+. |++||+.++..  ..+.    +++.++++..++.           .........||||||||++|||||
T Consensus       544 v~Q~~~lf~~-TI~eNi~~~~~--~~~~----~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARal  616 (694)
T TIGR03375       544 VPQDPRLFYG-TLRDNIALGAP--YADD----EEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARAL  616 (694)
T ss_pred             ECCChhhhhh-hHHHHHhCCCC--CCCH----HHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence            9999999986 99999987532  1222    3344555555543           333444568999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      +.+|+++|||||||+||+.+.+.+.+.|.++.+++|+|++||+++.+. .||+|++|++|++++.|+.+++.+.
T Consensus       617 l~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~-~~D~iivl~~G~i~e~G~~~eLl~~  689 (694)
T TIGR03375       617 LRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRIIVMDNGRIVADGPKDQVLEA  689 (694)
T ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEEeCCEEEeeCCHHHHHHH
Confidence            999999999999999999999999999999888999999999999875 6999999999999999998877543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=1.6e-49  Score=386.52  Aligned_cols=215  Identities=25%  Similarity=0.375  Sum_probs=189.5

Q ss_pred             EEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC--eeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS--SGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         3 i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++|++++|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+  +|+|.++|+++..   ..+++++|++
T Consensus        71 ~~~l~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~---~~~~~i~yv~  146 (659)
T PLN03211         71 ISDETRQIQ-ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK---QILKRTGFVT  146 (659)
T ss_pred             cccccccCC-CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch---hhccceEEEC
Confidence            457788886 478999999999999999999999999999999999999885  9999999998742   3456799999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHHHcCCCcccC-----CCCCcCChhHHHHHHHHHHHccCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLK---QVPKDLAQLEISNMIVDLGIPHKRT-----SLANTLSGGMQRKLSVAMAFIGGSR  152 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~kqrv~ia~al~~~p~  152 (251)
                      |++.+++.+||+||+.+....+   ....++..++++++++.+||.+..+     +.+..||||||||++||++|+.+|+
T Consensus       147 Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~  226 (659)
T PLN03211        147 QDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS  226 (659)
T ss_pred             cccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCC
Confidence            9999999999999999876543   2234445567899999999987664     4567899999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHH-HHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         153 TVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMD-EADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       153 llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      +|||||||+|||+.++..+++.|++++ +|+|||++||+++ ++.++||++++|++|++++.|+++++.+.
T Consensus       227 iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~  297 (659)
T PLN03211        227 LLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAY  297 (659)
T ss_pred             EEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHH
Confidence            999999999999999999999999986 5999999999998 58899999999999999999998776544

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=100.00  E-value=1.8e-49  Score=338.24  Aligned_cols=199  Identities=23%  Similarity=0.309  Sum_probs=166.5

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-----hHHhhcc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-----MTTIRRS   75 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~~   75 (251)
                      +.+.|++++|+++.++++++||+|++||+++|+|||||||||||++|+|+++|++|+|+++|+++...     ....++.
T Consensus         1 ~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   80 (218)
T cd03290           1 VQVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS   80 (218)
T ss_pred             CeeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence            46889999997556799999999999999999999999999999999999999999999999876431     1224568


Q ss_pred             eEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCcCChhHHHHHHHH
Q psy7367          76 LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----------KRTSLANTLSGGMQRKLSVA  144 (251)
Q Consensus        76 i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrv~ia  144 (251)
                      ++|++|++.++ +.|++||+.+....   ..    .+..++++.+++.+           ..++++.+||+|||||++||
T Consensus        81 i~~~~q~~~~~-~~t~~~nl~~~~~~---~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~la  152 (218)
T cd03290          81 VAYAAQKPWLL-NATVEENITFGSPF---NK----QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVA  152 (218)
T ss_pred             EEEEcCCCccc-cccHHHHHhhcCcC---CH----HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHH
Confidence            99999999888 57999999875321   11    12234455555432           23567899999999999999


Q ss_pred             HHHccCCCEEEEeCCCCCCCHHHHHHHHH--HHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCE
Q psy7367         145 MAFIGGSRTVILDEPTSGVDPYSRRSIWE--LLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGK  208 (251)
Q Consensus       145 ~al~~~p~llllDEPt~gLD~~~~~~l~~--~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~  208 (251)
                      |||+.+|+++||||||++||+.++..+++  +++.++ .|.|||++||+++.+. .||++++|++|.
T Consensus       153 ral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~G~  218 (218)
T cd03290         153 RALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDGS  218 (218)
T ss_pred             HHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence            99999999999999999999999999998  666665 4899999999999986 699999999874

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=100.00  E-value=1.8e-49  Score=357.61  Aligned_cols=187  Identities=28%  Similarity=0.402  Sum_probs=169.9

Q ss_pred             EEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHH
Q psy7367          32 FLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL  111 (251)
Q Consensus        32 liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~  111 (251)
                      |+||||||||||||+|+|+++|++|+|.++|+++.... ..+++++|+||++.+|+++||+||+.|+...++....+..+
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~-~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~   79 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-PHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP   79 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence            68999999999999999999999999999999985422 23578999999999999999999999987655555555566


Q ss_pred             HHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeC
Q psy7367         112 EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTH  189 (251)
Q Consensus       112 ~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tH  189 (251)
                      ++.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||+|||+.+++.+++.|+++. + |.|||++||
T Consensus        80 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTH  159 (325)
T TIGR01187        80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH  159 (325)
T ss_pred             HHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            78999999999999999999999999999999999999999999999999999999999999999984 4 899999999


Q ss_pred             CHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         190 YMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       190 d~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |++++..+|||+++|++|+++..|+++++.
T Consensus       160 d~~e~~~~~d~i~vl~~G~i~~~g~~~~~~  189 (325)
T TIGR01187       160 DQEEAMTMSDRIAIMRKGKIAQIGTPEEIY  189 (325)
T ss_pred             CHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            999999999999999999999999987653

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.1e-49  Score=377.10  Aligned_cols=204  Identities=23%  Similarity=0.359  Sum_probs=177.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++++|+ ++++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.          ..|+|+|
T Consensus         2 l~i~~ls~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~~   70 (530)
T PRK15064          2 LSTANITMQFG-AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN----------ERLGKLR   70 (530)
T ss_pred             EEEEEEEEEeC-CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----------CEEEEEe
Confidence            57999999996 478999999999999999999999999999999999999999999999862          3599999


Q ss_pred             cCCCCCCCCCHHHHHHHHHH-h----------cCCC---------------------hHHHHHHHHHHHHHcCCCccc-C
Q psy7367          81 QYNALFDKLTVEEHMWFYSQ-L----------KQVP---------------------KDLAQLEISNMIVDLGIPHKR-T  127 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~-~----------~~~~---------------------~~~~~~~~~~~l~~~~l~~~~-~  127 (251)
                      |++.+++.+||+||+.+... .          ...+                     ..+.++++.++++.+|+.+.. +
T Consensus        71 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~  150 (530)
T PRK15064         71 QDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHY  150 (530)
T ss_pred             ccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhc
Confidence            99999999999999986421 0          0000                     012235688899999998643 5


Q ss_pred             CCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCC
Q psy7367         128 SLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAG  207 (251)
Q Consensus       128 ~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G  207 (251)
                      +++.+|||||||||+||+||+.+|++|||||||++||+.++..+.++|.+  .|.|||+||||++++.++||++++|++|
T Consensus       151 ~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~~l~~g  228 (530)
T PRK15064        151 GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMADLDYG  228 (530)
T ss_pred             CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEEEeCC
Confidence            78999999999999999999999999999999999999999999999974  4899999999999999999999999999


Q ss_pred             EEE-eecCHHH
Q psy7367         208 KLQ-CCGSSVF  217 (251)
Q Consensus       208 ~i~-~~g~~~~  217 (251)
                      +++ +.|+++.
T Consensus       229 ~i~~~~g~~~~  239 (530)
T PRK15064        229 ELRVYPGNYDE  239 (530)
T ss_pred             EEEEecCCHHH
Confidence            994 7787653

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=100.00  E-value=3.8e-49  Score=380.67  Aligned_cols=212  Identities=25%  Similarity=0.372  Sum_probs=182.2

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      ++++|++++|++++++|+|+||++++||.++|+|+||||||||+|+|+|+++|++|+|+++|.++.. ....+|+.|+|+
T Consensus       335 I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v  414 (588)
T PRK13657        335 VEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVV  414 (588)
T ss_pred             EEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence            4789999999644679999999999999999999999999999999999999999999999999865 456778999999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC-----------CcccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI-----------PHKRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      ||++.+|+. |++||+.++..  ....+    ++.++++.+++           +.........||||||||++|||||+
T Consensus       415 ~Q~~~lf~~-Ti~~Ni~~~~~--~~~d~----~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall  487 (588)
T PRK13657        415 FQDAGLFNR-SIEDNIRVGRP--DATDE----EMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALL  487 (588)
T ss_pred             ecCcccccc-cHHHHHhcCCC--CCCHH----HHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence            999999975 99999987521  12222    23444444443           33334445679999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      ++|+++|||||||+||+.+.+.+++.|.++.+++|+|++||+++.+. .||++++|++|++++.|+.+++..
T Consensus       488 ~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~~~g~~~~l~~  558 (588)
T PRK13657        488 KDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR-NADRILVFDNGRVVESGSFDELVA  558 (588)
T ss_pred             cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHH-hCCEEEEEECCEEEEeCCHHHHHH
Confidence            99999999999999999999999999998877899999999998875 699999999999999999877643

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=100.00  E-value=2.2e-49  Score=339.29  Aligned_cols=192  Identities=24%  Similarity=0.386  Sum_probs=168.5

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCC--CCCHHHHHHHHH
Q psy7367          22 VNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD--KLTVEEHMWFYS   99 (251)
Q Consensus        22 l~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~--~ltv~e~l~~~~   99 (251)
                      |+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.    ..+++++|+||++.+++  .+|+.||+.++.
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~   76 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG----KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR   76 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch----HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence            578999999999999999999999999999999999999998763    24578999999987643  479999998753


Q ss_pred             Hh----cCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy7367         100 QL----KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL  175 (251)
Q Consensus       100 ~~----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l  175 (251)
                      ..    .........+++.++++.+++.+..++++.+||+|||||++|||||+.+|+++||||||++||+.+++.+.++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l  156 (223)
T TIGR03771        77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELF  156 (223)
T ss_pred             ccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            21    11122233456889999999998889999999999999999999999999999999999999999999999999


Q ss_pred             Hhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         176 IKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       176 ~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      ++++ +|.|||++|||++++.++||+++++ +|+++..|+++++
T Consensus       157 ~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~  199 (223)
T TIGR03771       157 IELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQL  199 (223)
T ss_pred             HHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHh
Confidence            9985 5899999999999999999999999 8999999987765

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=1.2e-49  Score=378.38  Aligned_cols=210  Identities=20%  Similarity=0.344  Sum_probs=180.5

Q ss_pred             EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-hH-HhhcceEEE
Q psy7367           2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MT-TIRRSLGVC   79 (251)
Q Consensus         2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~-~~~~~i~~v   79 (251)
                      +++|+++      .+|+++||+|++||+++|+||||||||||+|+|+|+.+|++|+|+++|+++... .. ..+++|+|+
T Consensus       270 ~~~~l~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v  343 (510)
T PRK15439        270 TVEDLTG------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYL  343 (510)
T ss_pred             EEeCCCC------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEEC
Confidence            4666662      269999999999999999999999999999999999999999999999988542 22 235689999


Q ss_pred             ccCC---CCCCCCCHHHHHHHHHH--hc-CCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367          80 PQYN---ALFDKLTVEEHMWFYSQ--LK-QVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSR  152 (251)
Q Consensus        80 ~q~~---~l~~~ltv~e~l~~~~~--~~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~p~  152 (251)
                      ||++   .+++.+|+.+|+.....  .. .......+++++++++.+++. ...++++.+|||||||||+|||||+.+|+
T Consensus       344 ~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~  423 (510)
T PRK15439        344 PEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQ  423 (510)
T ss_pred             CCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCC
Confidence            9985   58888999999864311  11 111222345688999999997 78899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHH
Q psy7367         153 TVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  217 (251)
Q Consensus       153 llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~  217 (251)
                      +|||||||+|||+.+++.++++|++++ +|.|||++|||++++.++|||+++|++|+++..|+++.
T Consensus       424 lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~  489 (510)
T PRK15439        424 LLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAA  489 (510)
T ss_pred             EEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence            999999999999999999999999985 58999999999999999999999999999999887754

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=100.00  E-value=1.4e-49  Score=391.08  Aligned_cols=213  Identities=23%  Similarity=0.401  Sum_probs=183.3

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      ++++|++++|+.++++|+|+||+|++|+.++|+||||||||||+|+|+|+++|++|+|+++|.++.. +...+|++||||
T Consensus       474 I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v  553 (708)
T TIGR01193       474 IVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYL  553 (708)
T ss_pred             EEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEE
Confidence            5789999999655789999999999999999999999999999999999999999999999999864 556788999999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC-----------CcccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI-----------PHKRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      ||++.+|+. |++||+.++.. ...+.    +++.++++..++           +.........||||||||++||||++
T Consensus       554 ~Q~~~lf~g-TI~eNi~l~~~-~~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall  627 (708)
T TIGR01193       554 PQEPYIFSG-SILENLLLGAK-ENVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALL  627 (708)
T ss_pred             ecCceehhH-HHHHHHhccCC-CCCCH----HHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHh
Confidence            999999986 99999988632 11222    234444554444           33344456789999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      ++|++||||||||+||+.+.+.+.+.|.++ +++|+|++||+++.+. .||+|++|++|++++.|+.+++.+.
T Consensus       628 ~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~~~G~~~~L~~~  698 (708)
T TIGR01193       628 TDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAK-QSDKIIVLDHGKIIEQGSHDELLDR  698 (708)
T ss_pred             hCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHH-cCCEEEEEECCEEEEECCHHHHHhc
Confidence            999999999999999999999999999886 5899999999999885 6999999999999999998877543

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=4.6e-49  Score=377.84  Aligned_cols=204  Identities=24%  Similarity=0.280  Sum_probs=177.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++||+++|++++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++          ...|||+|
T Consensus         7 l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~----------~~~i~~v~   76 (556)
T PRK11819          7 YTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP----------GIKVGYLP   76 (556)
T ss_pred             EEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC----------CCEEEEEe
Confidence            57899999996247899999999999999999999999999999999999999999999864          14699999


Q ss_pred             cCCCCCCCCCHHHHHHHHHH-hc-------------CCCh----------------------HHHHHHHHHHHHHcCCCc
Q psy7367          81 QYNALFDKLTVEEHMWFYSQ-LK-------------QVPK----------------------DLAQLEISNMIVDLGIPH  124 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~-~~-------------~~~~----------------------~~~~~~~~~~l~~~~l~~  124 (251)
                      |++.+++.+||.||+.++.. +.             ....                      .+..+++.++++.+++..
T Consensus        77 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~  156 (556)
T PRK11819         77 QEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP  156 (556)
T ss_pred             cCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc
Confidence            99999999999999987431 10             1110                      012356788999999964


Q ss_pred             ccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEe
Q psy7367         125 KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAII  204 (251)
Q Consensus       125 ~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l  204 (251)
                       .++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++.  .|||++|||++++..+||++++|
T Consensus       157 -~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~d~i~~l  233 (556)
T PRK11819        157 -WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVAGWILEL  233 (556)
T ss_pred             -ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcCeEEEE
Confidence             788999999999999999999999999999999999999999999999999884  59999999999999999999999


Q ss_pred             eCCEEE-eecCHHH
Q psy7367         205 AAGKLQ-CCGSSVF  217 (251)
Q Consensus       205 ~~G~i~-~~g~~~~  217 (251)
                      ++|+++ +.|+.+.
T Consensus       234 ~~g~i~~~~g~~~~  247 (556)
T PRK11819        234 DRGRGIPWEGNYSS  247 (556)
T ss_pred             eCCEEEEecCCHHH
Confidence            999986 6777653

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=100.00  E-value=1.9e-49  Score=390.05  Aligned_cols=211  Identities=23%  Similarity=0.388  Sum_probs=179.7

Q ss_pred             CEEEeEEEEeCC--CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367           1 MAIQNLSKRFPN--GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~--~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~   77 (251)
                      ++++||+++|++  ++++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....++++|+
T Consensus       479 I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~  558 (711)
T TIGR00958       479 IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVA  558 (711)
T ss_pred             EEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhce
Confidence            578999999964  2579999999999999999999999999999999999999999999999999864 5567889999


Q ss_pred             EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCcCChhHHHHHHHHHH
Q psy7367          78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----------KRTSLANTLSGGMQRKLSVAMA  146 (251)
Q Consensus        78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrv~ia~a  146 (251)
                      |++|++.+|+. |++||+.++..  ..+    ++++.++++..++.+           .......+||||||||++||||
T Consensus       559 ~v~Q~~~lF~g-TIreNI~~g~~--~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARA  631 (711)
T TIGR00958       559 LVGQEPVLFSG-SVRENIAYGLT--DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARA  631 (711)
T ss_pred             EEecCcccccc-CHHHHHhcCCC--CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHH
Confidence            99999999975 99999988632  122    234555666655543           3333456899999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      ++++|+++|||||||+||+.+.+.+.+  ....+++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus       632 Ll~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~-~aD~IivL~~G~ive~Gt~~eL~~~  703 (711)
T TIGR00958       632 LVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVE-RADQILVLKKGSVVEMGTHKQLMED  703 (711)
T ss_pred             HhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHH-hCCEEEEEECCEEEEeeCHHHHHhC
Confidence            999999999999999999999999988  22336899999999999886 5999999999999999999887554

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=100.00  E-value=8e-49  Score=375.30  Aligned_cols=215  Identities=24%  Similarity=0.427  Sum_probs=185.1

Q ss_pred             CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++|++++|++ ++++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+++.++|
T Consensus       317 i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~  396 (544)
T TIGR01842       317 LSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGY  396 (544)
T ss_pred             EEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEE
Confidence            478999999964 3579999999999999999999999999999999999999999999999999864 44567889999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHH-----HHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL-----EISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGS  151 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p  151 (251)
                      +||++.+|+. |++||+.++..  ....++..+     .+.+.++.+  |++.........||||||||++||||++.+|
T Consensus       397 v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~  473 (544)
T TIGR01842       397 LPQDVELFPG-TVAENIARFGE--NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDP  473 (544)
T ss_pred             ecCCcccccc-cHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCC
Confidence            9999999986 99999986431  122222211     234556666  6666677778899999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         152 RTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       152 ~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +++||||||++||+.+++.+.+.|.++. +++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus       474 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~  541 (544)
T TIGR01842       474 KLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLG-CVDKILVLQDGRIARFGERDEVL  541 (544)
T ss_pred             CEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEeeCCHHHHh
Confidence            9999999999999999999999999985 6899999999999765 69999999999999999987654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=100.00  E-value=8.5e-49  Score=378.03  Aligned_cols=217  Identities=23%  Similarity=0.327  Sum_probs=184.4

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      ++++|++++|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+++.++|+
T Consensus       335 i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v  414 (585)
T TIGR01192       335 VEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATV  414 (585)
T ss_pred             EEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence            4789999999654579999999999999999999999999999999999999999999999999864 445678899999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHH-----HHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR  152 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~  152 (251)
                      ||++.+|+ .|++||+.++..  ..+.++..+.     +.+.+..+  |++.........||||||||++|||||+.+|+
T Consensus       415 ~q~~~lf~-~ti~~Ni~~~~~--~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~  491 (585)
T TIGR01192       415 FQDAGLFN-RSIRENIRLGRE--GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAP  491 (585)
T ss_pred             ccCCccCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            99999987 599999988532  1222222221     12223332  45555667788999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         153 TVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       153 llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      ++||||||++||+.+++.+.+.|.++.+++|||++||+++.+. .||++++|++|++++.|+.+++.+.
T Consensus       492 ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~  559 (585)
T TIGR01192       492 ILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVR-NADLVLFLDQGRLIEKGSFQELIQK  559 (585)
T ss_pred             EEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHH-cCCEEEEEECCEEEEECCHHHHHHC
Confidence            9999999999999999999999998877999999999999986 5999999999999999998877543

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-49  Score=374.19  Aligned_cols=212  Identities=19%  Similarity=0.333  Sum_probs=181.4

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-Ch-HHhhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DM-TTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~-~~~~~~i~~   78 (251)
                      ++++|++++|   +.+|+++||+|++||+++|+||||||||||+|+|+|+.+|++|+|+++|+++.. .. ...++.++|
T Consensus       251 i~~~~l~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~  327 (491)
T PRK10982        251 LEVRNLTSLR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFAL  327 (491)
T ss_pred             EEEeCccccc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEE
Confidence            4688999874   359999999999999999999999999999999999999999999999998854 22 234677999


Q ss_pred             EccCC---CCCCCCCHHHHHHH-----HHHhcCC-ChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          79 CPQYN---ALFDKLTVEEHMWF-----YSQLKQV-PKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        79 v~q~~---~l~~~ltv~e~l~~-----~~~~~~~-~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      +||++   .+|+++|+.+|..+     .....+. .....++++.++++.+++. +..++++.+|||||||||+||||++
T Consensus       328 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~  407 (491)
T PRK10982        328 VTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLL  407 (491)
T ss_pred             cCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHh
Confidence            99985   47888888877422     2111121 2233445688899999995 5679999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCH
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  215 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~  215 (251)
                      .+|++|||||||+|||+.+++.++++|.++. +|.|||++|||++++..+|||+++|++|+++..++.
T Consensus       408 ~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~  475 (491)
T PRK10982        408 TQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDT  475 (491)
T ss_pred             cCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcc
Confidence            9999999999999999999999999999985 599999999999999999999999999999977654

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=9.6e-49  Score=320.22  Aligned_cols=159  Identities=26%  Similarity=0.504  Sum_probs=148.2

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-h-HHhhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-M-TTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~-~~~~~~i~~   78 (251)
                      ++++|++++|++ +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... . ...++.++|
T Consensus         1 l~~~~l~~~~~~-~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~   79 (163)
T cd03216           1 LELRGITKRFGG-VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAM   79 (163)
T ss_pred             CEEEEEEEEECC-eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEE
Confidence            579999999964 6899999999999999999999999999999999999999999999999988542 2 234678999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE  158 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE  158 (251)
                      +||                                                   ||+|||||++|||||+.+|+++||||
T Consensus        80 ~~q---------------------------------------------------LS~G~~qrl~laral~~~p~illlDE  108 (163)
T cd03216          80 VYQ---------------------------------------------------LSVGERQMVEIARALARNARLLILDE  108 (163)
T ss_pred             EEe---------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence            999                                                   99999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEe
Q psy7367         159 PTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQC  211 (251)
Q Consensus       159 Pt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~  211 (251)
                      ||++||+.+++.+.++|++++ ++.|||++|||++++..+||++++|++|++++
T Consensus       109 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~  162 (163)
T cd03216         109 PTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG  162 (163)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            999999999999999999985 58999999999999999999999999999874

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.1e-49  Score=341.19  Aligned_cols=211  Identities=29%  Similarity=0.402  Sum_probs=196.5

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc-cCCCCCCCCCHHH
Q psy7367          15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP-QYNALFDKLTVEE   93 (251)
Q Consensus        15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~-q~~~l~~~ltv~e   93 (251)
                      .+++|+||+|++|+++|++|||||||||+||+|+|++.|++|.|.++|++...+..++-+++++|+ |...++..+.+.|
T Consensus        38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d  117 (325)
T COG4586          38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD  117 (325)
T ss_pred             hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence            489999999999999999999999999999999999999999999999998665566667888875 6677887888999


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q psy7367          94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE  173 (251)
Q Consensus        94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~  173 (251)
                      -+.....++.++.+..+++.+.+.+.+++++..+.++..||-|||.|+.||.||+++|++|+|||||-|||..++..+.+
T Consensus       118 s~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~  197 (325)
T COG4586         118 SLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIRE  197 (325)
T ss_pred             hHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHH
Confidence            98888888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhcCc
Q psy7367         174 LLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARG  225 (251)
Q Consensus       174 ~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~  225 (251)
                      .++++.  .++||+++||+++.++++||||++|+.|+++++|+...+...|+..
T Consensus       198 Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~~  251 (325)
T COG4586         198 FLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPY  251 (325)
T ss_pred             HHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCCc
Confidence            999985  4999999999999999999999999999999999999988887653

>KOG0058|consensus

Probab=100.00  E-value=2.5e-49  Score=375.43  Aligned_cols=217  Identities=23%  Similarity=0.396  Sum_probs=188.3

Q ss_pred             CEEEeEEEEeCCC--cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367           1 MAIQNLSKRFPNG--KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~~--~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~   77 (251)
                      |+++||+|.|+.+  .++|+|+||+|+|||++||+||||+||||+.++|-.++.|++|+|.+||+|+.. +...+|++||
T Consensus       466 IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig  545 (716)
T KOG0058|consen  466 IEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIG  545 (716)
T ss_pred             EEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHee
Confidence            5799999999753  469999999999999999999999999999999999999999999999999975 6677899999


Q ss_pred             EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHH-----HHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccC
Q psy7367          78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGG  150 (251)
Q Consensus        78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~  150 (251)
                      +|-|+|.||.. |++|||.|+..  ....++....     +.+.+..|  |.+..-..+..+||||||||+||||||+++
T Consensus       546 ~V~QEPvLFs~-sI~eNI~YG~~--~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~  622 (716)
T KOG0058|consen  546 LVGQEPVLFSG-SIRENIAYGLD--NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRN  622 (716)
T ss_pred             eeeccceeecc-cHHHHHhcCCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcC
Confidence            99999999986 99999999765  3333333222     22333333  334444556679999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         151 SRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       151 p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      |.+|||||.||+||.++...+-+.|.+..+++|||++.|.+..++. ||+|+++++|++++.|+.+++.+.
T Consensus       623 P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~E~G~h~eLl~~  692 (716)
T KOG0058|consen  623 PRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH-ADQIVVIDKGRVVEMGTHDELLSK  692 (716)
T ss_pred             CCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh-ccEEEEEcCCeEEecccHHHHhhC
Confidence            9999999999999999999999999999888999999999999985 999999999999999998877554

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=100.00  E-value=3e-49  Score=379.68  Aligned_cols=213  Identities=23%  Similarity=0.404  Sum_probs=183.2

Q ss_pred             CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++|++++|++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.. ....++++|+|
T Consensus       331 i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~  410 (571)
T TIGR02203       331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVAL  410 (571)
T ss_pred             EEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceE
Confidence            478999999953 3579999999999999999999999999999999999999999999999999864 45677889999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCccc-----------CCCCCcCChhHHHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKR-----------TSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~kqrv~ia~al  147 (251)
                      +||++.+|+. |++||+.++.. ...+    .+++.++++.+++.+..           ......||||||||++||||+
T Consensus       411 v~Q~~~lf~~-Ti~~Ni~~~~~-~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARal  484 (571)
T TIGR02203       411 VSQDVVLFND-TIANNIAYGRT-EQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARAL  484 (571)
T ss_pred             EccCcccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence            9999999976 99999987531 0122    23456666666654332           223357999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      +.+|+++|||||||+||+.+.+.+++.|.++.+++|+|++||+.+.+. .||+|++|++|++++.|+.+++.+
T Consensus       485 l~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~-~~D~ii~l~~g~i~~~g~~~~l~~  556 (571)
T TIGR02203       485 LKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIE-KADRIVVMDDGRIVERGTHNELLA  556 (571)
T ss_pred             hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHH-hCCEEEEEeCCEEEeeCCHHHHHH
Confidence            999999999999999999999999999999878899999999998875 699999999999999999887643

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.4e-49  Score=326.20  Aligned_cols=220  Identities=23%  Similarity=0.350  Sum_probs=200.4

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcc-eeCCCC--hHHhhcceE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN-HDIRTD--MTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g-~~~~~~--~~~~~~~i~   77 (251)
                      ++++|++++|+ +..+|+++||++.+||.-+|||||||||||+|.+|+|-.+|+.|+|+++| .++...  ..-.|..||
T Consensus         6 L~~~~vsVsF~-GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIG   84 (249)
T COG4674           6 LYLDGVSVSFG-GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIG   84 (249)
T ss_pred             EEEeceEEEEc-ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccC
Confidence            47899999996 48899999999999999999999999999999999999999999999999 788652  234577999


Q ss_pred             EEccCCCCCCCCCHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHcc
Q psy7367          78 VCPQYNALFDKLTVEEHMWFYSQLK--------QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIG  149 (251)
Q Consensus        78 ~v~q~~~l~~~ltv~e~l~~~~~~~--------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~  149 (251)
                      --||.|..|+++||+||+.+.....        .....+.+++++++|...+|.+..++....||.||||++.|++.+++
T Consensus        85 RKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q  164 (249)
T COG4674          85 RKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQ  164 (249)
T ss_pred             ccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeecc
Confidence            9999999999999999998865421        12233445689999999999999999999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         150 GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      +|++|+||||++|+-....++.-++|+.++...+|+++.|||.++..+|++|.+|+.|.+.++|+.+++.+.
T Consensus       165 ~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~d  236 (249)
T COG4674         165 DPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQND  236 (249)
T ss_pred             CCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcC
Confidence            999999999999999999999999999999999999999999999999999999999999999999887654

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-48  Score=373.40  Aligned_cols=201  Identities=25%  Similarity=0.316  Sum_probs=177.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+          +.+||+|
T Consensus       320 l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~----------~~i~~~~  388 (530)
T PRK15064        320 LEVENLTKGFDN-GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN----------ANIGYYA  388 (530)
T ss_pred             EEEEeeEEeeCC-ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc----------eEEEEEc
Confidence            478999999964 67999999999999999999999999999999999999999999999762          4699999


Q ss_pred             cCCC--CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367          81 QYNA--LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD  157 (251)
Q Consensus        81 q~~~--l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD  157 (251)
                      |++.  +++.+|+.||+.+...   ..  ...+++.++++.+++. +..++++.+|||||||||+|||||+.+|++||||
T Consensus       389 q~~~~~~~~~~t~~~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLD  463 (530)
T PRK15064        389 QDHAYDFENDLTLFDWMSQWRQ---EG--DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMD  463 (530)
T ss_pred             ccccccCCCCCcHHHHHHHhcc---CC--ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            9974  5667999999865321   11  1234678899999995 6789999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEE-eecCHHHHH
Q psy7367         158 EPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ-CCGSSVFLK  219 (251)
Q Consensus       158 EPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  219 (251)
                      |||++||+.+++.++++|+++  +.|||++|||++++..+|||+++|++|+++ +.|++..+.
T Consensus       464 EPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~  524 (530)
T PRK15064        464 EPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYL  524 (530)
T ss_pred             CCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence            999999999999999999987  359999999999999999999999999997 788876553

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=4.4e-49  Score=372.74  Aligned_cols=212  Identities=20%  Similarity=0.288  Sum_probs=177.8

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CeeEEEEcceeCCC--ChHHhhcceE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-SSGTAKIYNHDIRT--DMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-~~G~i~~~g~~~~~--~~~~~~~~i~   77 (251)
                      |+++|++++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+.+| ++|+|+++|+++..  .....+++|+
T Consensus       261 l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~  339 (490)
T PRK10938        261 IVLNNGVVSYND-RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIG  339 (490)
T ss_pred             EEEeceEEEECC-eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhce
Confidence            478999999964 6799999999999999999999999999999999998876 69999999987632  2223567899


Q ss_pred             EEccCCCCCC--CCCHHHHHHHHHH----hcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccC
Q psy7367          78 VCPQYNALFD--KLTVEEHMWFYSQ----LKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGG  150 (251)
Q Consensus        78 ~v~q~~~l~~--~ltv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~  150 (251)
                      |++|++.++.  ..++.+++.+...    .+.......+++++++++.+++.+ ..++++.+|||||||||+|||||+.+
T Consensus       340 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~  419 (490)
T PRK10938        340 YVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKH  419 (490)
T ss_pred             EECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcC
Confidence            9999976543  3467666654321    111112233457889999999987 88999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CC-CeEEEEeCCHHHHHh-hcCEEEEeeCCEEEeec
Q psy7367         151 SRTVILDEPTSGVDPYSRRSIWELLIKYK-KG-RTVILTTHYMDEADL-LGDRIAIIAAGKLQCCG  213 (251)
Q Consensus       151 p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g-~tiii~tHd~~~~~~-~~d~i~~l~~G~i~~~g  213 (251)
                      |++|||||||+|||+.+++.++++|++++ ++ .|||++|||++++.. +||++++|++|+++..-
T Consensus       420 p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~  485 (490)
T PRK10938        420 PTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV  485 (490)
T ss_pred             CCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence            99999999999999999999999999985 44 579999999999987 59999999999987653

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=1.8e-48  Score=373.57  Aligned_cols=204  Identities=24%  Similarity=0.271  Sum_probs=176.2

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++||+++|++++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++          +..|||+|
T Consensus         5 i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~----------~~~i~~v~   74 (552)
T TIGR03719         5 YTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP----------GIKVGYLP   74 (552)
T ss_pred             EEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC----------CCEEEEEe
Confidence            57899999996246799999999999999999999999999999999999999999999864          24699999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHh-c-------------CCChHH----------------------HHHHHHHHHHHcCCCc
Q psy7367          81 QYNALFDKLTVEEHMWFYSQL-K-------------QVPKDL----------------------AQLEISNMIVDLGIPH  124 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~-~-------------~~~~~~----------------------~~~~~~~~l~~~~l~~  124 (251)
                      |++.+++++||.||+.++... .             .....+                      ...++.++++.+++..
T Consensus        75 Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  154 (552)
T TIGR03719        75 QEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP  154 (552)
T ss_pred             ccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc
Confidence            999999999999999874321 0             011110                      1245677888888864


Q ss_pred             ccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEe
Q psy7367         125 KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAII  204 (251)
Q Consensus       125 ~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l  204 (251)
                       .++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++.  .|||+||||++++..+||++++|
T Consensus       155 -~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~--~tvIiisHd~~~~~~~~d~v~~l  231 (552)
T TIGR03719       155 -WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP--GTVVAVTHDRYFLDNVAGWILEL  231 (552)
T ss_pred             -ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcCeEEEE
Confidence             688999999999999999999999999999999999999999999999998874  59999999999999999999999


Q ss_pred             eCCEEE-eecCHHH
Q psy7367         205 AAGKLQ-CCGSSVF  217 (251)
Q Consensus       205 ~~G~i~-~~g~~~~  217 (251)
                      ++|+++ +.|+.+.
T Consensus       232 ~~g~i~~~~g~~~~  245 (552)
T TIGR03719       232 DRGRGIPWEGNYSS  245 (552)
T ss_pred             ECCEEEEecCCHHH
Confidence            999976 6777653

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=100.00  E-value=1.3e-48  Score=320.32  Aligned_cols=164  Identities=27%  Similarity=0.374  Sum_probs=149.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|++++|++++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.          ++++|++
T Consensus         1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----------~~i~~~~   70 (166)
T cd03223           1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----------EDLLFLP   70 (166)
T ss_pred             CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----------ceEEEEC
Confidence            579999999954467999999999999999999999999999999999999999999999762          5799999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.++ .+|+.||+.++                              ++.+||||||||++|||||+.+|+++||||||
T Consensus        71 q~~~~~-~~tv~~nl~~~------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt  119 (166)
T cd03223          71 QRPYLP-LGTLREQLIYP------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT  119 (166)
T ss_pred             CCCccc-cccHHHHhhcc------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence            998865 57999999753                              46899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCE
Q psy7367         161 SGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGK  208 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~  208 (251)
                      ++||+.+++.+.++++++  +.|+|++|||++.+ .+||++++|+++.
T Consensus       120 ~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~-~~~d~i~~l~~~~  164 (166)
T cd03223         120 SALDEESEDRLYQLLKEL--GITVISVGHRPSLW-KFHDRVLDLDGEG  164 (166)
T ss_pred             cccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence            999999999999999887  68999999999876 5899999998763

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.8e-50  Score=342.73  Aligned_cols=206  Identities=23%  Similarity=0.401  Sum_probs=182.2

Q ss_pred             eEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-----ChHHhhcceEEE
Q psy7367           5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-----DMTTIRRSLGVC   79 (251)
Q Consensus         5 ~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-----~~~~~~~~i~~v   79 (251)
                      |+.+++|  ..+ =+++|+.+.-.+++|.|+||||||||+|+|+|+.+|+.|.|.++|+-+..     ..+.-+++||||
T Consensus         5 ~~~~~lG--~~~-l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYV   81 (352)
T COG4148           5 NFRQRLG--NFA-LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYV   81 (352)
T ss_pred             ehhhhcC--ceE-EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeE
Confidence            3445553  334 36799999867999999999999999999999999999999999987632     122346889999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP  159 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEP  159 (251)
                      ||+..|||++||+.|+.|+....      .....+++.+.+|+.++++++|..|||||||||+|+|||+..|++||||||
T Consensus        82 FQDARLFpH~tVrgNL~YG~~~~------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEP  155 (352)
T COG4148          82 FQDARLFPHYTVRGNLRYGMWKS------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEP  155 (352)
T ss_pred             eeccccccceEEecchhhhhccc------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCc
Confidence            99999999999999999976532      234578889999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHhhhC--CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         160 TSGVDPYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       160 t~gLD~~~~~~l~~~l~~l~~--g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      .|+||..-+++++-+|.++++  +..|+++||.++++.++||++++|++|++.+.|+.+++-
T Consensus       156 LaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~  217 (352)
T COG4148         156 LASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVW  217 (352)
T ss_pred             hhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHh
Confidence            999999999999999999963  899999999999999999999999999999999987653

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.2e-48  Score=328.02  Aligned_cols=190  Identities=22%  Similarity=0.291  Sum_probs=166.7

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++++|++ +.+++ +||+|++||+++|+||||||||||+++|+|+.+|++|+|+++|.++...   .++.++|++
T Consensus         2 l~~~~l~~~~~~-~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~---~~~~~~~~~   76 (195)
T PRK13541          2 LSLHQLQFNIEQ-KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNI---AKPYCTYIG   76 (195)
T ss_pred             eEEEEeeEEECC-cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChh---hhhhEEecc
Confidence            578999999964 55555 9999999999999999999999999999999999999999999887432   134689999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++.+||.||+.+....++     ..+++.++++.+++.+..++++.+||+|||||++||||++.+|+++||||||
T Consensus        77 ~~~~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~  151 (195)
T PRK13541         77 HNLGLKLEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVE  151 (195)
T ss_pred             CCcCCCccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            99888888999999988654432     1245778899999998889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEE
Q psy7367         161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRI  201 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i  201 (251)
                      ++||+.+++.+.+++++.. ++.|||++||+++++.. ||.+
T Consensus       152 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~-~~~~  192 (195)
T PRK13541        152 TNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS-AQIL  192 (195)
T ss_pred             ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch-hhee
Confidence            9999999999999998764 58999999999998876 7654

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=3.9e-50  Score=322.56  Aligned_cols=203  Identities=22%  Similarity=0.381  Sum_probs=182.9

Q ss_pred             EEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEEcc
Q psy7367           3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQ   81 (251)
Q Consensus         3 i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v~q   81 (251)
                      ++++.+.-+ +..+|+++||++.+||+++|+||||||||||+|+++-|++|++|+++|.|+++.. ....+|++|+|+.|
T Consensus         6 ~kq~~y~a~-~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q   84 (223)
T COG4619           6 LKQVGYLAG-DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQ   84 (223)
T ss_pred             HHHHHhhcC-CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHc
Confidence            344444443 4679999999999999999999999999999999999999999999999999975 56788999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          82 YNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        82 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      .|.||++ ||++|+.|+..++....  .++++.++++++++.+ .+++++.+||||||||++|+|-|..-|++|||||||
T Consensus        85 ~paLfg~-tVeDNlifP~~~r~rr~--dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T  161 (223)
T COG4619          85 TPALFGD-TVEDNLIFPWQIRNRRP--DRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEIT  161 (223)
T ss_pred             Ccccccc-chhhccccchHHhccCC--ChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence            9999987 99999999988765332  3456789999999975 578899999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhh-h-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEE
Q psy7367         161 SGVDPYSRRSIWELLIKY-K-KGRTVILTTHYMDEADLLGDRIAIIAAGKL  209 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l-~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i  209 (251)
                      |+||+.+.+.+-++|.++ + +..+|+++|||.+++.+++|+++-+..|.+
T Consensus       162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~  212 (223)
T COG4619         162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA  212 (223)
T ss_pred             hhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence            999999999999999887 4 489999999999999999999999999876

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=100.00  E-value=4.1e-48  Score=376.88  Aligned_cols=217  Identities=23%  Similarity=0.420  Sum_probs=194.4

Q ss_pred             CEEEeEEEEeCC---CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHH----h
Q psy7367           1 MAIQNLSKRFPN---GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTT----I   72 (251)
Q Consensus         1 l~i~~l~~~y~~---~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~----~   72 (251)
                      |+++|++++|++   .+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...+    .
T Consensus         5 l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~   84 (648)
T PRK10535          5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLR   84 (648)
T ss_pred             EEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHH
Confidence            578999999953   1469999999999999999999999999999999999999999999999999854 2222    2


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR  152 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~  152 (251)
                      ++.++|+||++.+|+++|+.||+.+.....+....+.++++.++++.+++.+..++++.+||+||+||++|||||+.+|+
T Consensus        85 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~  164 (648)
T PRK10535         85 REHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQ  164 (648)
T ss_pred             hccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            46899999999999999999999986655454445556678999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         153 TVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       153 llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      ++||||||+|||+.+++.+.+++++++ +|.|+|++||+++.+. .|||+++|++|++++.|++++.
T Consensus       165 lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~  230 (648)
T PRK10535        165 VILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPPAQEK  230 (648)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEEEEECCEEEeecCcccc
Confidence            999999999999999999999999985 5999999999999886 6999999999999999987654

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=100.00  E-value=8.9e-49  Score=384.56  Aligned_cols=217  Identities=24%  Similarity=0.412  Sum_probs=184.6

Q ss_pred             CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++|++++|++ ++.+|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|+++|.++.. +...+|+.|+|
T Consensus       456 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~  535 (694)
T TIGR01846       456 ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGV  535 (694)
T ss_pred             EEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeE
Confidence            578999999953 3569999999999999999999999999999999999999999999999999865 55678899999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHH-----HHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL-----EISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGS  151 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p  151 (251)
                      |||++.+|+. |++||+.++..  ..+.++..+     .+.+.++.+  |++.........||||||||++|||||+++|
T Consensus       536 v~q~~~lf~~-ti~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~  612 (694)
T TIGR01846       536 VLQENVLFSR-SIRDNIALCNP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNP  612 (694)
T ss_pred             EccCCeehhh-hHHHHHhcCCC--CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence            9999999975 99999987431  122222211     122333333  4555555667799999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         152 RTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       152 ~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      +++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+.+++.+.
T Consensus       613 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~~~g~~~~l~~~  681 (694)
T TIGR01846       613 RILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAESGRHEELLAL  681 (694)
T ss_pred             CEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh-CCEEEEEeCCEEEEeCCHHHHHHc
Confidence            999999999999999999999999998778999999999999865 999999999999999998877543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=100.00  E-value=3.1e-48  Score=373.12  Aligned_cols=212  Identities=24%  Similarity=0.394  Sum_probs=181.8

Q ss_pred             CEEEeEEEEeCCC--cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367           1 MAIQNLSKRFPNG--KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~~--~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~   77 (251)
                      ++++|++++|+++  +.+|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|+++|.++.. ....+++.|+
T Consensus       338 i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~  417 (576)
T TIGR02204       338 IEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMA  417 (576)
T ss_pred             EEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhce
Confidence            5789999999632  569999999999999999999999999999999999999999999999999864 4566788999


Q ss_pred             EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC-----------CcccCCCCCcCChhHHHHHHHHHH
Q psy7367          78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI-----------PHKRTSLANTLSGGMQRKLSVAMA  146 (251)
Q Consensus        78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~kqrv~ia~a  146 (251)
                      |+||++.+|+. |++||+.++..  ..+.    +++.++++.+++           +.........||||||||++||||
T Consensus       418 ~~~Q~~~lf~~-Ti~~Ni~~~~~--~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRa  490 (576)
T TIGR02204       418 LVPQDPVLFAA-SVMENIRYGRP--DATD----EEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARA  490 (576)
T ss_pred             EEccCCccccc-cHHHHHhcCCC--CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHH
Confidence            99999999975 99999987531  1122    234455555554           333334456799999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      ++.+|+++|||||||+||+.+.+.+++.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus       491 l~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~~~g~~~~l~~  563 (576)
T TIGR02204       491 ILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVL-KADRIVVMDQGRIVAQGTHAELIA  563 (576)
T ss_pred             HHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEeeecHHHHHH
Confidence            9999999999999999999999999999999877899999999998875 699999999999999999876643

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=3.7e-48  Score=372.51  Aligned_cols=212  Identities=23%  Similarity=0.356  Sum_probs=182.3

Q ss_pred             CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++|++++|+. ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++.. +...+++.++|
T Consensus       314 I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~  393 (569)
T PRK10789        314 LDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAV  393 (569)
T ss_pred             EEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEE
Confidence            478999999964 2579999999999999999999999999999999999999999999999999854 45567889999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC-----------CcccCCCCCcCChhHHHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI-----------PHKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      +||++.+|+. |++||+.++..  ....    +++.++++..++           +...+.....||||||||++|||||
T Consensus       394 v~q~~~lf~~-ti~~Ni~~~~~--~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARal  466 (569)
T PRK10789        394 VSQTPFLFSD-TVANNIALGRP--DATQ----QEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARAL  466 (569)
T ss_pred             EccCCeeccc-cHHHHHhcCCC--CCCH----HHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence            9999999975 99999987532  1222    233444444443           3344456678999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      +++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+.+++.+
T Consensus       467 l~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~  538 (569)
T PRK10789        467 LLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALT-EASEILVMQHGHIAQRGNHDQLAQ  538 (569)
T ss_pred             hcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHH-cCCEEEEEeCCEEEEecCHHHHHH
Confidence            999999999999999999999999999999878999999999998886 599999999999999999877644

>KOG0057|consensus

Probab=100.00  E-value=7.4e-49  Score=361.94  Aligned_cols=211  Identities=25%  Similarity=0.430  Sum_probs=186.0

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      |+++|++++|+.++++|+++||+|++||-+||+|+|||||||++|+|.++.. ++|+|++||+++.. ....+|+.||||
T Consensus       352 I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~V  430 (591)
T KOG0057|consen  352 IEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVV  430 (591)
T ss_pred             EEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEe
Confidence            5789999999865669999999999999999999999999999999999999 99999999999965 567789999999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCcCChhHHHHHHHHHHHc
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK-----------RTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      ||+..||++ ||.+|+.++...  .+.    +++.++.++.++.+.           ...+...|||||||||+||||++
T Consensus       431 PQd~~LFnd-TIl~NI~YGn~s--as~----eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~l  503 (591)
T KOG0057|consen  431 PQDSVLFND-TILYNIKYGNPS--ASD----EEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFL  503 (591)
T ss_pred             CCcccccch-hHHHHhhcCCCC--cCH----HHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHh
Confidence            999999986 999999986432  122    345566666666543           34455689999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      .+|+++++|||||+||.++.+.+++.+.....++|+|++-|++..+.. ||+|+++++|++.+.|+.+++-.
T Consensus       504 Kda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~gth~ell~  574 (591)
T KOG0057|consen  504 KDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEYGTHSELLA  574 (591)
T ss_pred             cCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc-CCEEEEEECCeeEEeccHHHHhh
Confidence            999999999999999999999999999997679999999999999986 99999999999999999887654

>KOG0055|consensus

Probab=100.00  E-value=5.3e-49  Score=390.91  Aligned_cols=217  Identities=26%  Similarity=0.422  Sum_probs=185.6

Q ss_pred             CEEEeEEEEeCCCc--ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367           1 MAIQNLSKRFPNGK--LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~~~--~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~   77 (251)
                      ++++||+|+|+.+.  .+|+++||.|++|+.++|+|||||||||++++|.+++.|++|+|+++|.++.. +.+.+|.+||
T Consensus       351 ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~ig  430 (1228)
T KOG0055|consen  351 IEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIG  430 (1228)
T ss_pred             eEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcC
Confidence            58999999997643  69999999999999999999999999999999999999999999999999975 5677899999


Q ss_pred             EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHH-----HHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccC
Q psy7367          78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGG  150 (251)
Q Consensus        78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~  150 (251)
                      .|+|+|.||. .|++||+.|+..-  ...++..+.     +.+.+..+  |++......-.+||||||||+||||||+.+
T Consensus       431 lV~QePvlF~-~tI~eNI~~G~~d--at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~  507 (1228)
T KOG0055|consen  431 LVSQEPVLFA-TTIRENIRYGKPD--ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRN  507 (1228)
T ss_pred             eeeechhhhc-ccHHHHHhcCCCc--ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhC
Confidence            9999998886 6999999986421  112221111     22222322  344444555667999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         151 SRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       151 p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      |++||||||||+||+++.+.+.+.|.+..+|+|.|+++|++..+.. +|+|++|++|+|++.|+++++-..
T Consensus       508 P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi~~  577 (1228)
T KOG0055|consen  508 PKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELIAL  577 (1228)
T ss_pred             CCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHHHhc
Confidence            9999999999999999999999999999999999999999999987 999999999999999999887554

>KOG0059|consensus

Probab=100.00  E-value=1e-48  Score=391.55  Aligned_cols=233  Identities=39%  Similarity=0.691  Sum_probs=218.6

Q ss_pred             EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh--HHhhcceEEE
Q psy7367           2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM--TTIRRSLGVC   79 (251)
Q Consensus         2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~~i~~v   79 (251)
                      .++|++|.|+..+.|++++|+.|++|||.|++|||||||||++|+|+|..+|++|+++++|.++....  ...++.+||+
T Consensus       566 ~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyC  645 (885)
T KOG0059|consen  566 VLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYC  645 (885)
T ss_pred             EEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccC
Confidence            57899999964323999999999999999999999999999999999999999999999999997533  3478999999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP  159 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEP  159 (251)
                      ||...+++.+|.+|++.+++++++.++.+..+.++.+++.++|.+..+++++.||||+|+|+++|.|++.+|++++||||
T Consensus       646 PQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEP  725 (885)
T KOG0059|consen  646 PQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEP  725 (885)
T ss_pred             CchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCC
Confidence            99999999999999999999999999888888999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHhhhC-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhcCcceEEEecch
Q psy7367         160 TSGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKS  234 (251)
Q Consensus       160 t~gLD~~~~~~l~~~l~~l~~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~  234 (251)
                      |+|+||.+|+.+|+++.++++ |+.||++||.|++++.+|||+.+|.+|++.+.|++++++++++.+|.+++....
T Consensus       726 stGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~gy~l~~~~~~  801 (885)
T KOG0059|consen  726 STGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRYGSGYTLTVRIKE  801 (885)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhcCCcEEEEEEECC
Confidence            999999999999999999965 569999999999999999999999999999999999999999999988876554

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=100.00  E-value=5.5e-48  Score=335.44  Aligned_cols=195  Identities=22%  Similarity=0.284  Sum_probs=164.7

Q ss_pred             EeCCCcceeeeeeEEEe-----CCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCC
Q psy7367           9 RFPNGKLAVNGLNVNFY-----EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYN   83 (251)
Q Consensus         9 ~y~~~~~il~~isl~i~-----~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~   83 (251)
                      +|++....+++++|+++     +||+++|+||||||||||+++|+|+++|++|+|.++|.           .|+|++|++
T Consensus         2 ~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-----------~i~~~~q~~   70 (246)
T cd03237           2 TYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-----------TVSYKPQYI   70 (246)
T ss_pred             CCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-----------eEEEecccc
Confidence            45433446777777776     79999999999999999999999999999999999874           589999998


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCC
Q psy7367          84 ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGV  163 (251)
Q Consensus        84 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gL  163 (251)
                      .+++.+||.||+.+.......    ......++++.+++.+..++++.+|||||||||+||+||+.+|+++||||||++|
T Consensus        71 ~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~L  146 (246)
T cd03237          71 KADYEGTVRDLLSSITKDFYT----HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYL  146 (246)
T ss_pred             cCCCCCCHHHHHHHHhhhccc----cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence            877789999999765432211    1123577899999998899999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEE--eecCHHHH
Q psy7367         164 DPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQ--CCGSSVFL  218 (251)
Q Consensus       164 D~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~--~~g~~~~~  218 (251)
                      |+.++..+.++|+++.  .++|||++|||++++..+||++++|+++..+  ..+++..+
T Consensus       147 D~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~  205 (246)
T cd03237         147 DVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSL  205 (246)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence            9999999999999984  3899999999999999999999999765433  33455443

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=100.00  E-value=6.7e-48  Score=328.13  Aligned_cols=192  Identities=16%  Similarity=0.118  Sum_probs=164.7

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEE-EcceeCCCChHHhhcceEEEccCCCCCCCCCHHH
Q psy7367          15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK-IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEE   93 (251)
Q Consensus        15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~-~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e   93 (251)
                      ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|. ++|..+            .+.+.+.+++.+|+.|
T Consensus         1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~------------~~~~~~~l~~~ltv~e   68 (213)
T PRK15177          1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL------------PLGANSFILPGLTGEE   68 (213)
T ss_pred             CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee------------ccccccccCCcCcHHH
Confidence            379999999999999999999999999999999999999999997 766432            1234567888999999


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q psy7367          94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE  173 (251)
Q Consensus        94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~  173 (251)
                      |+.+....++....+.   ...+.+.++++...++++.+||+|||||++|||||+.+|+++||||||+++|+.+++.+.+
T Consensus        69 nl~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~  145 (213)
T PRK15177         69 NARMMASLYGLDGDEF---SHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQA  145 (213)
T ss_pred             HHHHHHHHcCCCHHHH---HHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHH
Confidence            9999776655443322   2234456788888899999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         174 LLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       174 ~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      .+.+..++.++|++||+++++..+||++++|++|++++.++.+...+.
T Consensus       146 ~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  193 (213)
T PRK15177        146 ALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATAL  193 (213)
T ss_pred             HHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHH
Confidence            886654457899999999999999999999999999999998766543

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=2.2e-48  Score=335.13  Aligned_cols=184  Identities=26%  Similarity=0.438  Sum_probs=167.7

Q ss_pred             CEEEeEEEEeCCC--------cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHh
Q psy7367           1 MAIQNLSKRFPNG--------KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~--------~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~   72 (251)
                      ++++||++.|..+        ..+++||||+|++||++||+|+||||||||-|+|+||++|++|+|+|+|+++....   
T Consensus         5 l~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~---   81 (268)
T COG4608           5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS---   81 (268)
T ss_pred             EEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc---
Confidence            5789999999532        37999999999999999999999999999999999999999999999999864311   


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGS  151 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~p  151 (251)
                                                       ..+..+++.++|+.+|+. +.++++|++|||||+||++|||||+.+|
T Consensus        82 ---------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P  128 (268)
T COG4608          82 ---------------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNP  128 (268)
T ss_pred             ---------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCC
Confidence                                             334456799999999997 4889999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         152 RTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       152 ~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      +++++|||+|+||...+.+++++|.+++ + |.|.+++|||+..+..+|||+.+|..|+|++.|+.+++..
T Consensus       129 ~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~  199 (268)
T COG4608         129 KLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS  199 (268)
T ss_pred             cEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhh
Confidence            9999999999999999999999999996 3 9999999999999999999999999999999999876644

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.8e-49  Score=362.85  Aligned_cols=212  Identities=25%  Similarity=0.454  Sum_probs=187.3

Q ss_pred             CEEEeEEEEeCCCc-ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNGK-LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~-~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++|++++|++.+ ++|+|+||++++||.++|+|++|||||||+++|.|.++|++|+|.++|.++.. +..++|+.|++
T Consensus       337 l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~v  416 (573)
T COG4987         337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISV  416 (573)
T ss_pred             eeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhh
Confidence            47899999997543 69999999999999999999999999999999999999999999999999865 44567889999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCccc-----------CCCCCcCChhHHHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKR-----------TSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~kqrv~ia~al  147 (251)
                      ++|.+.+|.. |+++|+.+...-  .+    .+.+.++++++||.++.           +.-...||||||||++|||+|
T Consensus       417 l~Qr~hlF~~-Tlr~NL~lA~~~--As----DEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~L  489 (573)
T COG4987         417 LTQRVHLFSG-TLRDNLRLANPD--AS----DEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARAL  489 (573)
T ss_pred             hccchHHHHH-HHHHHHhhcCCC--CC----HHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHH
Confidence            9999999986 999999885321  12    24566778888776543           334578999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      +++.+++||||||.|||+.+.+++++++.+..+|+|+||+||++..++. ||||++|++|+++++|++.++..
T Consensus       490 L~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~-~drIivl~~Gkiie~G~~~~Ll~  561 (573)
T COG4987         490 LHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER-MDRIIVLDNGKIIEEGTHAELLA  561 (573)
T ss_pred             HcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh-cCEEEEEECCeeeecCCHHhhhc
Confidence            9999999999999999999999999999998889999999999999985 99999999999999999987754

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=6.8e-48  Score=344.84  Aligned_cols=220  Identities=23%  Similarity=0.407  Sum_probs=197.7

Q ss_pred             CEEEeEEEEeCC--C--------cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC---
Q psy7367           1 MAIQNLSKRFPN--G--------KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT---   67 (251)
Q Consensus         1 l~i~~l~~~y~~--~--------~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~---   67 (251)
                      ++.+++...|.-  +        ..+++++||++++||.+||+|.||||||||=++|.+|+++. |+|+|.|+++..   
T Consensus       277 l~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~  355 (534)
T COG4172         277 LEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSR  355 (534)
T ss_pred             EEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccCh
Confidence            467888888832  1        25899999999999999999999999999999999999876 999999999963   


Q ss_pred             -ChHHhhcceEEEccCC--CCCCCCCHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHH
Q psy7367          68 -DMTTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQ--VPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKL  141 (251)
Q Consensus        68 -~~~~~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv  141 (251)
                       ....+|+++-.|||+|  +|-|.|||.+.+.-++..+.  .+..+..+++.++|+.+||+ ...+++|+++|||||||+
T Consensus       356 ~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRI  435 (534)
T COG4172         356 KEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRI  435 (534)
T ss_pred             hhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHH
Confidence             2345688999999998  68899999999999888754  56777788999999999998 467899999999999999


Q ss_pred             HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         142 SVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       142 ~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +||||++.+|++++||||||+||..-+.+++++|++++ + |.+-+++|||+..+..+||+++||++|+|++.|+.+.+.
T Consensus       436 AIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if  515 (534)
T COG4172         436 AIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVF  515 (534)
T ss_pred             HHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHh
Confidence            99999999999999999999999999999999999985 3 999999999999999999999999999999999988765


Q ss_pred             hh
Q psy7367         220 NS  221 (251)
Q Consensus       220 ~~  221 (251)
                      ..
T Consensus       516 ~~  517 (534)
T COG4172         516 AN  517 (534)
T ss_pred             cC
Confidence            54

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=1.5e-47  Score=367.43  Aligned_cols=203  Identities=25%  Similarity=0.333  Sum_probs=176.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++ +         ..|||+|
T Consensus       325 l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~---------~~i~~v~  393 (556)
T PRK11819        325 IEAENLSKSFGD-RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T---------VKLAYVD  393 (556)
T ss_pred             EEEEeEEEEECC-eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c---------eEEEEEe
Confidence            478999999964 6799999999999999999999999999999999999999999999843 2         1599999


Q ss_pred             cCC-CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367          81 QYN-ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE  158 (251)
Q Consensus        81 q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE  158 (251)
                      |++ .+++.+||.||+.+.....+....  ...+..+++.+++.. ..++++.+|||||||||+|||||+.+|++|||||
T Consensus       394 q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE  471 (556)
T PRK11819        394 QSRDALDPNKTVWEEISGGLDIIKVGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDE  471 (556)
T ss_pred             CchhhcCCCCCHHHHHHhhccccccccc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            996 788889999999886533222211  123557899999974 5789999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeC-CEEE-eecCHHHH
Q psy7367         159 PTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAA-GKLQ-CCGSSVFL  218 (251)
Q Consensus       159 Pt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~-G~i~-~~g~~~~~  218 (251)
                      ||+|||+.++..++++|.++. + |||++|||++++..+||++++|++ |++. +.|+..+.
T Consensus       472 Pt~~LD~~~~~~l~~~l~~~~-~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~  531 (556)
T PRK11819        472 PTNDLDVETLRALEEALLEFP-G-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEY  531 (556)
T ss_pred             CCCCCCHHHHHHHHHHHHhCC-C-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHH
Confidence            999999999999999999884 4 899999999999999999999996 7876 56776543

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=2e-47  Score=366.35  Aligned_cols=203  Identities=26%  Similarity=0.332  Sum_probs=175.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|++++ +         .+|||+|
T Consensus       323 l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~---------~~i~~v~  391 (552)
T TIGR03719       323 IEAENLSKGFGD-KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T---------VKLAYVD  391 (552)
T ss_pred             EEEeeEEEEECC-eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c---------eEEEEEe
Confidence            478999999964 6899999999999999999999999999999999999999999999843 2         1599999


Q ss_pred             cCC-CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367          81 QYN-ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE  158 (251)
Q Consensus        81 q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE  158 (251)
                      |++ .+++.+||.||+.++....+....  ..++.++++.+++.. ..++++.+|||||||||+|||||+.+|++|||||
T Consensus       392 q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDE  469 (552)
T TIGR03719       392 QSRDALDPNKTVWEEISGGLDIIQLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDE  469 (552)
T ss_pred             CCccccCCCCcHHHHHHhhccccccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence            997 478889999999886533222221  223567899999974 5789999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeC-CEEE-eecCHHHH
Q psy7367         159 PTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAA-GKLQ-CCGSSVFL  218 (251)
Q Consensus       159 Pt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~-G~i~-~~g~~~~~  218 (251)
                      ||+|||+.+++.++++|+++. + |||++|||++++..+||++++|++ |++. +.|+..+.
T Consensus       470 Pt~~LD~~~~~~l~~~l~~~~-~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~  529 (552)
T TIGR03719       470 PTNDLDVETLRALEEALLEFA-G-CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEY  529 (552)
T ss_pred             CCCCCCHHHHHHHHHHHHHCC-C-eEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHH
Confidence            999999999999999999984 3 899999999999999999999987 5776 56766543

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=100.00  E-value=4.4e-47  Score=335.69  Aligned_cols=195  Identities=22%  Similarity=0.338  Sum_probs=164.0

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|+++.  + +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|            .|+|++
T Consensus        40 l~i~nls~~--~-~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------~i~yv~  104 (282)
T cd03291          40 LFFSNLCLV--G-APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------RISFSS  104 (282)
T ss_pred             EEEEEEEEe--c-ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------EEEEEe
Confidence            578999985  2 5699999999999999999999999999999999999999999999987            389999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCcCChhHHHHHHHHHHHcc
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----------KRTSLANTLSGGMQRKLSVAMAFIG  149 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrv~ia~al~~  149 (251)
                      |++.+++. |++||+.+.....   .    .++.++++.+++.+           ..++++.+||+|||||++|||||+.
T Consensus       105 q~~~l~~~-tv~enl~~~~~~~---~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~  176 (282)
T cd03291         105 QFSWIMPG-TIKENIIFGVSYD---E----YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK  176 (282)
T ss_pred             Cccccccc-CHHHHhhcccccC---H----HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence            99988875 9999998743211   1    11223333333322           2344568999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHH-HhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         150 GSRTVILDEPTSGVDPYSRRSIWELL-IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       150 ~p~llllDEPt~gLD~~~~~~l~~~l-~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +|++|||||||+|||+.++..+++.+ .+++++.|||++||+++++. .||++++|++|+++..|+++++.
T Consensus       177 ~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~  246 (282)
T cd03291         177 DADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQ  246 (282)
T ss_pred             CCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence            99999999999999999999999865 56666899999999999985 79999999999999999987654

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=100.00  E-value=1.1e-47  Score=335.23  Aligned_cols=201  Identities=23%  Similarity=0.320  Sum_probs=172.0

Q ss_pred             EeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEE-----------EcceeCCCChHHh
Q psy7367           4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK-----------IYNHDIRTDMTTI   72 (251)
Q Consensus         4 ~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~-----------~~g~~~~~~~~~~   72 (251)
                      .|++++|++++.+|+|+|+ +++||+++|+||||||||||||+|+|+++|++|+|+           ++|+++.......
T Consensus         4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~   82 (255)
T cd03236           4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL   82 (255)
T ss_pred             cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence            4799999643469999994 999999999999999999999999999999999996           7787764322222


Q ss_pred             h---cceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHcc
Q psy7367          73 R---RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIG  149 (251)
Q Consensus        73 ~---~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~  149 (251)
                      +   ..++|++|...+++. ++.+++.+...     .......+.++++.+++.+..++++.+||+|||||++|||||+.
T Consensus        83 ~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~-----~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~  156 (255)
T cd03236          83 LEGDVKVIVKPQYVDLIPK-AVKGKVGELLK-----KKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALAR  156 (255)
T ss_pred             hhcccceeeecchhccCch-HHHHHHHHHhc-----hhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHh
Confidence            2   247999999888874 88888876432     22334568899999999988899999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEee
Q psy7367         150 GSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  212 (251)
Q Consensus       150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~  212 (251)
                      +|+++||||||++||+.++..+.++|++++ +++|||++|||++++..+||++++|+ |++.+.
T Consensus       157 ~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~  219 (255)
T cd03236         157 DADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAY  219 (255)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcc
Confidence            999999999999999999999999999986 48999999999999999999999995 556543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=100.00  E-value=2e-47  Score=364.32  Aligned_cols=196  Identities=26%  Similarity=0.428  Sum_probs=169.7

Q ss_pred             CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++|++++|+++ +++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|.++.. ....+|++++|
T Consensus       321 i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~  400 (529)
T TIGR02857       321 LEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAW  400 (529)
T ss_pred             EEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEE
Confidence            4789999999643 479999999999999999999999999999999999999999999999999865 45678899999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCcCChhHHHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----------KRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      ++|++.+|+. |++||+.++..  ..+.    +++.++++..++.+           ........||||||||++|||||
T Consensus       401 v~Q~~~lf~~-ti~~Ni~~~~~--~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal  473 (529)
T TIGR02857       401 VPQHPFLFAG-TIAENIRLARP--DASD----AEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAF  473 (529)
T ss_pred             EcCCCcccCc-CHHHHHhccCC--CCCH----HHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHH
Confidence            9999999975 99999988532  1122    34556666665543           33344578999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEe
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAII  204 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l  204 (251)
                      +++|+++|||||||+||+.+.+.+.+.+.++.+++|+|++||+++.+. .||+|++|
T Consensus       474 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~~l  529 (529)
T TIGR02857       474 LRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE-RADRIVVL  529 (529)
T ss_pred             hcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH-hCCEEEeC
Confidence            999999999999999999999999999999878999999999999885 69999875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=6e-47  Score=367.05  Aligned_cols=207  Identities=27%  Similarity=0.363  Sum_probs=186.6

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEcceeCCCChHHhhcceEEEccCCCCCCCC
Q psy7367          13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS---SGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKL   89 (251)
Q Consensus        13 ~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~l   89 (251)
                      ++++|+|+|+++++||+++|+|||||||||||++|+|..+|.   +|+|.++|+++..  ...++.+||++|++.+++.+
T Consensus        37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~--~~~~~~i~yv~Q~~~~~~~l  114 (617)
T TIGR00955        37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA--KEMRAISAYVQQDDLFIPTL  114 (617)
T ss_pred             ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH--HHHhhhceeeccccccCccC
Confidence            467999999999999999999999999999999999998885   8999999998742  34677899999999999999


Q ss_pred             CHHHHHHHHHHhcC---CChHHHHHHHHHHHHHcCCCcccCCCCC------cCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          90 TVEEHMWFYSQLKQ---VPKDLAQLEISNMIVDLGIPHKRTSLAN------TLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        90 tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      ||+||+.|...++.   ...++..++++++++.+||.+..++.++      .|||||||||+||++|+.+|++++|||||
T Consensus       115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt  194 (617)
T TIGR00955       115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT  194 (617)
T ss_pred             cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence            99999999876542   3345556689999999999998888887      49999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHH-HHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMD-EADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      +|||+.++..+++.|++++ +|+|||+++|++. ++.++||++++|++|++++.|+++++...
T Consensus       195 sgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~  257 (617)
T TIGR00955       195 SGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPF  257 (617)
T ss_pred             cchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHH
Confidence            9999999999999999986 4999999999995 78889999999999999999998776543

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=2.7e-47  Score=398.05  Aligned_cols=212  Identities=22%  Similarity=0.332  Sum_probs=185.7

Q ss_pred             CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      |+++||+++|+.+ +++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.. +...+|++|+|
T Consensus      1235 I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~i 1314 (1495)
T PLN03232       1235 IKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSI 1314 (1495)
T ss_pred             EEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEE
Confidence            5789999999533 579999999999999999999999999999999999999999999999999965 56778999999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCcCChhHHHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----------KRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      |||+|.+|+. |++|||.++.   ..+.    +++.++++..++.+           ........||||||||++|||||
T Consensus      1315 VpQdp~LF~g-TIr~NL~~~~---~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARAL 1386 (1495)
T PLN03232       1315 IPQSPVLFSG-TVRFNIDPFS---EHND----ADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARAL 1386 (1495)
T ss_pred             ECCCCeeeCc-cHHHHcCCCC---CCCH----HHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHH
Confidence            9999999986 9999997642   2222    34556666665543           33344568999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      +++|++||||||||+||+++.+.+.+.|++..+++|||+|+|+++.+.. ||||++|++|++++.|+++++.+.
T Consensus      1387 Lr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt~~eLl~~ 1459 (1495)
T PLN03232       1387 LRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSR 1459 (1495)
T ss_pred             HhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence            9999999999999999999999999999998779999999999999986 999999999999999999887543

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=100.00  E-value=1.4e-47  Score=365.39  Aligned_cols=184  Identities=24%  Similarity=0.430  Sum_probs=159.7

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++||+++|++++++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|.++..-...+|++|+|||
T Consensus       335 I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~  414 (529)
T TIGR02868       335 LELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFA  414 (529)
T ss_pred             EEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEc
Confidence            47899999997546799999999999999999999999999999999999999999999999998644567789999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCccc-----------CCCCCcCChhHHHHHHHHHHHcc
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKR-----------TSLANTLSGGMQRKLSVAMAFIG  149 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~kqrv~ia~al~~  149 (251)
                      |++.+|+. |++||+.++..  ..+    ++++.++++..++.+..           ......||||||||++|||||++
T Consensus       415 Q~~~lF~~-TI~eNI~~g~~--~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~  487 (529)
T TIGR02868       415 QDAHLFDT-TVRDNLRLGRP--DAT----DEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLA  487 (529)
T ss_pred             cCcccccc-cHHHHHhccCC--CCC----HHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhc
Confidence            99999986 99999988531  112    23466667776664432           23345799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCH
Q psy7367         150 GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYM  191 (251)
Q Consensus       150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~  191 (251)
                      +|++||||||||+||+.+.+.+.+.+.++.+++|+|++||++
T Consensus       488 ~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl  529 (529)
T TIGR02868       488 DAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL  529 (529)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence            999999999999999999999999999888899999999974

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=4.4e-47  Score=397.53  Aligned_cols=211  Identities=21%  Similarity=0.336  Sum_probs=185.4

Q ss_pred             CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      |+++||+++|+.+ +++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. +...+|++|++
T Consensus      1238 I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~Isi 1317 (1622)
T PLN03130       1238 IKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGI 1317 (1622)
T ss_pred             EEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEE
Confidence            5789999999543 469999999999999999999999999999999999999999999999999975 56788999999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCcCChhHHHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----------KRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      |||+|.+|+. |++|||.++.   ....    +++.++++..++.+           ........||||||||++|||||
T Consensus      1318 VpQdp~LF~G-TIreNLd~~~---~~td----eei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARAL 1389 (1622)
T PLN03130       1318 IPQAPVLFSG-TVRFNLDPFN---EHND----ADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARAL 1389 (1622)
T ss_pred             ECCCCccccc-cHHHHhCcCC---CCCH----HHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHH
Confidence            9999999987 9999997642   1222    34556666655533           33334468999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      +++|++||||||||+||+.+.+.+.+.|++..+++|||+|+|+++.+.. ||||++|++|++++.|+++++.+
T Consensus      1390 Lr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130       1390 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred             HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEEEeCCHHHHHh
Confidence            9999999999999999999999999999998779999999999999986 99999999999999999987754

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=100.00  E-value=7.6e-47  Score=361.91  Aligned_cols=201  Identities=20%  Similarity=0.320  Sum_probs=174.3

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      ++++|++++|++++++|+|+||+|++|+.++|+||||||||||+++|+|+++|++|+|.++|+++.. ....++++|+|+
T Consensus       323 i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v  402 (547)
T PRK10522        323 LELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAV  402 (547)
T ss_pred             EEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEE
Confidence            4789999999644579999999999999999999999999999999999999999999999999864 455778899999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCC-----CCcCChhHHHHHHHHHHHccCCCEE
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSL-----ANTLSGGMQRKLSVAMAFIGGSRTV  154 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~kqrv~ia~al~~~p~ll  154 (251)
                      +|++.+|+. |+++|   .   .    ....+.+.++++.+++....+..     ...||||||||++||||++++|+++
T Consensus       403 ~q~~~lf~~-ti~~n---~---~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~il  471 (547)
T PRK10522        403 FTDFHLFDQ-LLGPE---G---K----PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDIL  471 (547)
T ss_pred             ecChhHHHH-hhccc---c---C----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            999999875 88887   1   1    12234577889999887654322     3589999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHhh-h-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367         155 ILDEPTSGVDPYSRRSIWELLIKY-K-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  213 (251)
Q Consensus       155 llDEPt~gLD~~~~~~l~~~l~~l-~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g  213 (251)
                      |||||||+||+.+.+.+.+.+.+. + +++|+|++||+++.+. .||++++|++|++++..
T Consensus       472 ilDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~~  531 (547)
T PRK10522        472 LLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEMRNGQLSELT  531 (547)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEEECCEEEEec
Confidence            999999999999999999998765 4 4899999999998765 79999999999998763

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=8.9e-47  Score=363.22  Aligned_cols=194  Identities=21%  Similarity=0.288  Sum_probs=172.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|++++|++ . .|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++            .+++|+|
T Consensus       341 l~~~~ls~~~~~-~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~------------~~i~y~~  406 (590)
T PRK13409        341 VEYPDLTKKLGD-F-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE------------LKISYKP  406 (590)
T ss_pred             EEEcceEEEECC-E-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe------------eeEEEec
Confidence            478999999953 3 5999999999999999999999999999999999999999999985            1499999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++++||+||+.+.....  ..   ...+.++++.+++.+..++++.+|||||||||+||+||+.+|++|||||||
T Consensus       407 Q~~~~~~~~tv~e~l~~~~~~~--~~---~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt  481 (590)
T PRK13409        407 QYIKPDYDGTVEDLLRSITDDL--GS---SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPS  481 (590)
T ss_pred             ccccCCCCCcHHHHHHHHhhhc--Ch---HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            9998888899999998753222  11   124678999999998899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367         161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  214 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~  214 (251)
                      ++||+.++..+.++|+++. + |.|||++|||++++..+|||+++|++ ++...|+
T Consensus       482 ~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~  536 (590)
T PRK13409        482 AHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH  536 (590)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence            9999999999999999984 3 89999999999999999999999965 7766554

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-46  Score=365.12  Aligned_cols=199  Identities=23%  Similarity=0.346  Sum_probs=174.3

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|+++.|+ ++.+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++.          .++||++
T Consensus       313 l~~~~l~~~y~-~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~igy~~  381 (638)
T PRK10636        313 LKMEKVSAGYG-DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG----------IKLGYFA  381 (638)
T ss_pred             EEEEeeEEEeC-CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC----------EEEEEec
Confidence            47899999996 478999999999999999999999999999999999999999999998631          2599999


Q ss_pred             cCC--CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367          81 QYN--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD  157 (251)
Q Consensus        81 q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD  157 (251)
                      |++  .+.+..|+.+++..   ..   ......++.++++.|++. +..++++.+|||||||||+||++|+.+|++||||
T Consensus       382 Q~~~~~l~~~~~~~~~~~~---~~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLD  455 (638)
T PRK10636        382 QHQLEFLRADESPLQHLAR---LA---PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLD  455 (638)
T ss_pred             CcchhhCCccchHHHHHHH---hC---chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            974  35566788877642   11   122345688999999996 4688999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEE-eecCHHHH
Q psy7367         158 EPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ-CCGSSVFL  218 (251)
Q Consensus       158 EPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~  218 (251)
                      |||++||+.++..+.++|.++ . .|||+||||++++..+||++++|++|+++ +.|+.++.
T Consensus       456 EPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  515 (638)
T PRK10636        456 EPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY  515 (638)
T ss_pred             CCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence            999999999999999999998 3 49999999999999999999999999997 78887655

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=5.5e-47  Score=393.74  Aligned_cols=212  Identities=22%  Similarity=0.384  Sum_probs=181.6

Q ss_pred             CEEEeEEEEeCC--CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-------------------------
Q psy7367           1 MAIQNLSKRFPN--GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-------------------------   53 (251)
Q Consensus         1 l~i~~l~~~y~~--~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-------------------------   53 (251)
                      |+++||+|+|++  ++++|+|+||+|++|+++||+||||||||||+++|+|++.|                         
T Consensus      1166 I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 (1466)
T PTZ00265       1166 IEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGD 1245 (1466)
T ss_pred             EEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccc
Confidence            578999999963  24799999999999999999999999999999999999998                         


Q ss_pred             -----------------------------CeeEEEEcceeCCC-ChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcC
Q psy7367          54 -----------------------------SSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ  103 (251)
Q Consensus        54 -----------------------------~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~  103 (251)
                                                   ++|+|+++|.++.. +...+|+.||||+|+|.||+ .|++|||.++..  .
T Consensus      1246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~--~ 1322 (1466)
T PTZ00265       1246 EEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKE--D 1322 (1466)
T ss_pred             cccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCC--C
Confidence                                         69999999999965 56788999999999999997 599999999632  1


Q ss_pred             CChHHHHHHHHHHHHHcCC-----------CcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH
Q psy7367         104 VPKDLAQLEISNMIVDLGI-----------PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW  172 (251)
Q Consensus       104 ~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~  172 (251)
                      ...    ++++++++..++           +.........||||||||++|||||+++|++||||||||+||+.+.+.+.
T Consensus      1323 at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~ 1398 (1466)
T PTZ00265       1323 ATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIE 1398 (1466)
T ss_pred             CCH----HHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH
Confidence            222    234555555444           33334455679999999999999999999999999999999999999999


Q ss_pred             HHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeC----CEEE-eecCHHHHHh
Q psy7367         173 ELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAA----GKLQ-CCGSSVFLKN  220 (251)
Q Consensus       173 ~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~----G~i~-~~g~~~~~~~  220 (251)
                      +.|.++.  +++|+|+|||+++.+. .||+|++|++    |+++ +.|+.+++..
T Consensus      1399 ~~L~~~~~~~~~TvIiIaHRlsti~-~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265       1399 KTIVDIKDKADKTIITIAHRIASIK-RSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred             HHHHHHhccCCCEEEEEechHHHHH-hCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence            9999984  5899999999999986 5999999999    8955 8999887754

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=2e-46  Score=364.52  Aligned_cols=202  Identities=24%  Similarity=0.293  Sum_probs=175.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++||+++|++ +++|+++||+|++|++++|+||||||||||||+|+|+++|++|+|++ |.++         .|||++
T Consensus       320 l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~---------~i~y~~  388 (635)
T PRK11147        320 FEMENVNYQIDG-KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL---------EVAYFD  388 (635)
T ss_pred             EEEeeeEEEECC-eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc---------EEEEEe
Confidence            478999999964 77999999999999999999999999999999999999999999998 5322         599999


Q ss_pred             cCC-CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367          81 QYN-ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE  158 (251)
Q Consensus        81 q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE  158 (251)
                      |++ .+++.+||.||+.+........  .....+.++++.+++. +..++++.+|||||||||+||+||+.+|++|||||
T Consensus       389 q~~~~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDE  466 (635)
T PRK11147        389 QHRAELDPEKTVMDNLAEGKQEVMVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDE  466 (635)
T ss_pred             CcccccCCCCCHHHHHHhhccccccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            986 5888999999998753211111  1134578899999996 56789999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEee-CCEEEe-ecCHHH
Q psy7367         159 PTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIA-AGKLQC-CGSSVF  217 (251)
Q Consensus       159 Pt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~-~G~i~~-~g~~~~  217 (251)
                      ||++||+.++..+.++++++  +.|||+||||.+++..+||++++|+ +|++.. .|+..+
T Consensus       467 Pt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~  525 (635)
T PRK11147        467 PTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHD  525 (635)
T ss_pred             CCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence            99999999999999999887  4599999999999999999999998 899864 565543

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=2.3e-46  Score=335.08  Aligned_cols=221  Identities=24%  Similarity=0.411  Sum_probs=194.7

Q ss_pred             CEEEeEEEEeC---CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCC-ChH-
Q psy7367           1 MAIQNLSKRFP---NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRT-DMT-   70 (251)
Q Consensus         1 l~i~~l~~~y~---~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~-~~~-   70 (251)
                      ++++|+++.|.   +...++++|||+|.+||.++|+|.||||||-..+.++||++.     -+|+|.|+|+++-. ..+ 
T Consensus         7 L~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~   86 (534)
T COG4172           7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQ   86 (534)
T ss_pred             eeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHH
Confidence            57899999994   236799999999999999999999999999999999999864     37999999999843 222 


Q ss_pred             --Hhh-cceEEEccCC--CCCCCCCHHHHHHHHHHh-cCCChHHHHHHHHHHHHHcCCCc---ccCCCCCcCChhHHHHH
Q psy7367          71 --TIR-RSLGVCPQYN--ALFDKLTVEEHMWFYSQL-KQVPKDLAQLEISNMIVDLGIPH---KRTSLANTLSGGMQRKL  141 (251)
Q Consensus        71 --~~~-~~i~~v~q~~--~l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgG~kqrv  141 (251)
                        .+| .+|+++||+|  +|-|-.|+...+.-..++ ++...+++++++.++|+.+|+.+   .++.+|++|||||||||
T Consensus        87 lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRV  166 (534)
T COG4172          87 LRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRV  166 (534)
T ss_pred             HhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHH
Confidence              333 4899999998  566667888888777665 46778888899999999999964   56789999999999999


Q ss_pred             HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         142 SVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       142 ~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +||.||+++|++||.||||++||...+.+|+++|++++ + |.+++++|||+..+.++||||.||.+|++++.|+.+.+.
T Consensus       167 MIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF  246 (534)
T COG4172         167 MIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLF  246 (534)
T ss_pred             HHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHh
Confidence            99999999999999999999999999999999999995 4 999999999999999999999999999999999987664


Q ss_pred             hh
Q psy7367         220 NS  221 (251)
Q Consensus       220 ~~  221 (251)
                      ..
T Consensus       247 ~~  248 (534)
T COG4172         247 AA  248 (534)
T ss_pred             hC
Confidence            43

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.7e-47  Score=321.44  Aligned_cols=213  Identities=23%  Similarity=0.309  Sum_probs=187.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-Ch-HHhhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DM-TTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~-~~~~~~i~~   78 (251)
                      |+++|++.+|+ ++++|+|+|++|++||-.+|+|||||||||||++++|.++|++|.+.+.|+...+ .. .++|++|||
T Consensus        32 i~l~~v~v~r~-gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~  110 (257)
T COG1119          32 IELKNVSVRRN-GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGL  110 (257)
T ss_pred             EEecceEEEEC-CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCc
Confidence            57899999996 5899999999999999999999999999999999999999999999999998854 33 688999999


Q ss_pred             EccC--CCCCCCCCHHHHHHHHHH----hcC-CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367          79 CPQY--NALFDKLTVEEHMWFYSQ----LKQ-VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGS  151 (251)
Q Consensus        79 v~q~--~~l~~~ltv~e~l~~~~~----~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p  151 (251)
                      |.-.  ..+.+..+|+|-+.-+..    ++. ...+...+++..+++.+|+.+..+++..+||-||||||.|||||+.+|
T Consensus       111 vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P  190 (257)
T COG1119         111 VSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDP  190 (257)
T ss_pred             cCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCC
Confidence            9753  345566788887754321    122 334556678999999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHhhh-C--CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367         152 RTVILDEPTSGVDPYSRRSIWELLIKYK-K--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  214 (251)
Q Consensus       152 ~llllDEPt~gLD~~~~~~l~~~l~~l~-~--g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~  214 (251)
                      ++|||||||+|||..+++.+.+.|.++. .  +.++|+|||..+++-...++++.+++|+++..|.
T Consensus       191 ~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~  256 (257)
T COG1119         191 ELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK  256 (257)
T ss_pred             CEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence            9999999999999999999999999984 2  7899999999999999999999999999998763

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=100.00  E-value=2.7e-46  Score=358.69  Aligned_cols=201  Identities=20%  Similarity=0.303  Sum_probs=173.8

Q ss_pred             CEEEeEEEEeCCC----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcc
Q psy7367           1 MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRS   75 (251)
Q Consensus         1 l~i~~l~~~y~~~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~   75 (251)
                      ++++|++++|++.    +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+++.
T Consensus       338 i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~  417 (555)
T TIGR01194       338 IELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDL  417 (555)
T ss_pred             EEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhh
Confidence            4689999999642    259999999999999999999999999999999999999999999999999965 44567889


Q ss_pred             eEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCC------CCcCChhHHHHHHHHHHHcc
Q psy7367          76 LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSL------ANTLSGGMQRKLSVAMAFIG  149 (251)
Q Consensus        76 i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~LSgG~kqrv~ia~al~~  149 (251)
                      ++|++|++.+|++ |+++|..         .....+++.++++.+++.+..++.      ...||||||||++||||++.
T Consensus       418 i~~v~q~~~lf~~-ti~~n~~---------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~  487 (555)
T TIGR01194       418 FSAIFADFHLFDD-LIGPDEG---------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLE  487 (555)
T ss_pred             CcEEccChhhhhh-hhhcccc---------cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHc
Confidence            9999999999875 8888841         112345678899999998765443      35799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHH-hhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEee
Q psy7367         150 GSRTVILDEPTSGVDPYSRRSIWELLI-KYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  212 (251)
Q Consensus       150 ~p~llllDEPt~gLD~~~~~~l~~~l~-~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~  212 (251)
                      +|+++||||||++||+.+.+.+.+.+. .++ +++|+|++||+++.+. .||+|++|++|++++.
T Consensus       488 ~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~-~~d~i~~l~~G~i~~~  551 (555)
T TIGR01194       488 DRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE-LADQIIKLAAGCIVKD  551 (555)
T ss_pred             CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEe
Confidence            999999999999999999999998664 454 5899999999998765 7999999999999864

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=3.9e-46  Score=386.65  Aligned_cols=212  Identities=23%  Similarity=0.358  Sum_probs=189.6

Q ss_pred             CEEEeEEEEeC---CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCeeEEEEcceeCCCChHHhhc
Q psy7367           1 MAIQNLSKRFP---NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP---VSSGTAKIYNHDIRTDMTTIRR   74 (251)
Q Consensus         1 l~i~~l~~~y~---~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~   74 (251)
                      ++++||++.|+   +++.+|+|||+++++||+++|+|||||||||||++|+|+.+   |++|+|.++|+++..   ..++
T Consensus       760 l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~---~~~~  836 (1394)
T TIGR00956       760 FHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS---SFQR  836 (1394)
T ss_pred             EEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh---hhhc
Confidence            36899999994   23679999999999999999999999999999999999987   789999999998742   4578


Q ss_pred             ceEEEccCCCCCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHHHcCCCcccCCCCC----cCChhHHHHHHHHHHH
Q psy7367          75 SLGVCPQYNALFDKLTVEEHMWFYSQLKQ---VPKDLAQLEISNMIVDLGIPHKRTSLAN----TLSGGMQRKLSVAMAF  147 (251)
Q Consensus        75 ~i~~v~q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~LSgG~kqrv~ia~al  147 (251)
                      .+||++|++.+++.+||+||+.|...++.   .+.++..++++++++.++|.+.+++.++    .|||||||||+||+||
T Consensus       837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL  916 (1394)
T TIGR00956       837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVEL  916 (1394)
T ss_pred             ceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHH
Confidence            89999999988899999999999876542   3344555678999999999999998887    7999999999999999


Q ss_pred             ccCCC-EEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHH-HHhhcCEEEEeeCC-EEEeecCH
Q psy7367         148 IGGSR-TVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDE-ADLLGDRIAIIAAG-KLQCCGSS  215 (251)
Q Consensus       148 ~~~p~-llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~-~~~~~d~i~~l~~G-~i~~~g~~  215 (251)
                      +.+|+ +|+|||||+|||+.++..+++.|++++ +|+|||++||+++. +.+.||++++|++| ++++.|++
T Consensus       917 ~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~  988 (1394)
T TIGR00956       917 VAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDL  988 (1394)
T ss_pred             HcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCc
Confidence            99997 999999999999999999999999985 59999999999986 45789999999997 99999986

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=2.5e-46  Score=391.14  Aligned_cols=211  Identities=22%  Similarity=0.372  Sum_probs=185.4

Q ss_pred             CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      |+++||+++|+++ .++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.. ....+|+.|+|
T Consensus      1309 I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~i 1388 (1560)
T PTZ00243       1309 LVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSM 1388 (1560)
T ss_pred             EEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceE
Confidence            5789999999644 459999999999999999999999999999999999999999999999999965 56788999999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCccc-------C----CCCCcCChhHHHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKR-------T----SLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LSgG~kqrv~ia~al  147 (251)
                      |||+|.+|+. |++|||..+.   ..+    .+++.++++..++.+..       +    .....||||||||++|||||
T Consensus      1389 VpQdp~LF~g-TIreNIdp~~---~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARAL 1460 (1560)
T PTZ00243       1389 IPQDPVLFDG-TVRQNVDPFL---EAS----SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARAL 1460 (1560)
T ss_pred             ECCCCccccc-cHHHHhCccc---CCC----HHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHH
Confidence            9999999986 9999996532   222    24577778877775432       2    23357999999999999999


Q ss_pred             ccC-CCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         148 IGG-SRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       148 ~~~-p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      +++ |++||||||||+||+.+.+.+.+.|++..+++|||+|+|+++.+.. ||+|++|++|++++.|+++++..
T Consensus      1461 L~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243       1461 LKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred             hcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHh-CCEEEEEECCEEEEECCHHHHHh
Confidence            995 9999999999999999999999999988778999999999999875 99999999999999999988754

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-45  Score=359.20  Aligned_cols=202  Identities=21%  Similarity=0.261  Sum_probs=168.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++||+++|++ +.+|+|+||+|++|+++||+||||||||||||+|+|+++|++|+|.++|..          .++|++
T Consensus         2 i~i~nls~~~g~-~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~----------~i~~~~   70 (638)
T PRK10636          2 IVFSSLQIRRGV-RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW----------QLAWVN   70 (638)
T ss_pred             EEEEEEEEEeCC-ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC----------EEEEEe
Confidence            579999999964 789999999999999999999999999999999999999999999998732          378888


Q ss_pred             cCCCCCCCCCHHHHHHHH-----------------------HHhc----CCChHHHHHHHHHHHHHcCCC-cccCCCCCc
Q psy7367          81 QYNALFDKLTVEEHMWFY-----------------------SQLK----QVPKDLAQLEISNMIVDLGIP-HKRTSLANT  132 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~-----------------------~~~~----~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~  132 (251)
                      |++..+ ..|+.+++.-.                       ..+.    .........++.++++.+|+. +..++++.+
T Consensus        71 q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~  149 (638)
T PRK10636         71 QETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSD  149 (638)
T ss_pred             cCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhh
Confidence            864333 24555544210                       0000    001112345788999999997 578999999


Q ss_pred             CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEE-e
Q psy7367         133 LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ-C  211 (251)
Q Consensus       133 LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~-~  211 (251)
                      |||||||||+||+||+.+|++|||||||++||+.++..+.++|+++  +.|||+||||++++..+||++++|++|+++ +
T Consensus       150 LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~  227 (638)
T PRK10636        150 FSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQSLFEY  227 (638)
T ss_pred             cCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEe
Confidence            9999999999999999999999999999999999999999999887  469999999999999999999999999996 4


Q ss_pred             ecCHH
Q psy7367         212 CGSSV  216 (251)
Q Consensus       212 ~g~~~  216 (251)
                      .|+..
T Consensus       228 ~g~~~  232 (638)
T PRK10636        228 TGNYS  232 (638)
T ss_pred             cCCHH
Confidence            56643

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=9.4e-46  Score=386.95  Aligned_cols=212  Identities=19%  Similarity=0.257  Sum_probs=185.3

Q ss_pred             CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      |+++||+++|+.+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. ....+|++|++
T Consensus      1285 I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~i 1364 (1522)
T TIGR00957      1285 VEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITI 1364 (1522)
T ss_pred             EEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeE
Confidence            5789999999643 469999999999999999999999999999999999999999999999999975 56788999999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCcCChhHHHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----------KRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      |||+|.+|+. |++|||..+.   ..+.    +++.++++..++.+           ........||||||||++|||||
T Consensus      1365 VpQdp~LF~g-TIr~NLdp~~---~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARAL 1436 (1522)
T TIGR00957      1365 IPQDPVLFSG-SLRMNLDPFS---QYSD----EEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARAL 1436 (1522)
T ss_pred             ECCCCcccCc-cHHHHcCccc---CCCH----HHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHH
Confidence            9999999987 9999997432   2222    34556666665533           33334467999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      +++|++||||||||+||+++.+.+.+.|++..+++|||+|+|+++.+.. ||||++|++|+|++.|+++++.+.
T Consensus      1437 Lr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957      1437 LRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred             HcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence            9999999999999999999999999999988789999999999999986 899999999999999999887543

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=3.4e-46  Score=387.81  Aligned_cols=205  Identities=21%  Similarity=0.348  Sum_probs=173.4

Q ss_pred             CEEEeEEEEeCCC--cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEE-cceeCCC-ChHHhhcce
Q psy7367           1 MAIQNLSKRFPNG--KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI-YNHDIRT-DMTTIRRSL   76 (251)
Q Consensus         1 l~i~~l~~~y~~~--~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~-~g~~~~~-~~~~~~~~i   76 (251)
                      |+++||+++|+++  +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++ +|.++.. +...+|++|
T Consensus       383 I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~I  462 (1466)
T PTZ00265        383 IQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKI  462 (1466)
T ss_pred             EEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhc
Confidence            5789999999642  36999999999999999999999999999999999999999999999 4677753 445678899


Q ss_pred             EEEccCCCCCCCCCHHHHHHHHHHhc-C---------C-----------------------------------------C
Q psy7367          77 GVCPQYNALFDKLTVEEHMWFYSQLK-Q---------V-----------------------------------------P  105 (251)
Q Consensus        77 ~~v~q~~~l~~~ltv~e~l~~~~~~~-~---------~-----------------------------------------~  105 (251)
                      |||+|++.+|+. |++||+.++.... +         .                                         .
T Consensus       463 g~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  541 (1466)
T PTZ00265        463 GVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNY  541 (1466)
T ss_pred             cEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccccc
Confidence            999999999975 9999999863100 0         0                                         0


Q ss_pred             hHHHHHHHHHHHHHcCCCcc-----------cCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy7367         106 KDLAQLEISNMIVDLGIPHK-----------RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL  174 (251)
Q Consensus       106 ~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~  174 (251)
                      .....+++.++++.+++.+.           ..+.+.+||||||||++|||||+.+|++||||||||+||+.+...+.+.
T Consensus       542 ~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~  621 (1466)
T PTZ00265        542 QTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKT  621 (1466)
T ss_pred             ccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence            00112456777777776543           3466789999999999999999999999999999999999999999999


Q ss_pred             HHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCC
Q psy7367         175 LIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAG  207 (251)
Q Consensus       175 l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G  207 (251)
                      |.+++  +|+|+|++||+++.+ +.||+|++|++|
T Consensus       622 L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl~~g  655 (1466)
T PTZ00265        622 INNLKGNENRITIIIAHRLSTI-RYANTIFVLSNR  655 (1466)
T ss_pred             HHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEEeCC
Confidence            99985  489999999999998 579999999986

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=100.00  E-value=1.4e-45  Score=295.84  Aligned_cols=144  Identities=30%  Similarity=0.452  Sum_probs=136.7

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|++++|++ .++++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+          +.++|+|
T Consensus         1 l~~~~l~~~~~~-~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----------~~i~~~~   69 (144)
T cd03221           1 IELENLSKTYGG-KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----------VKIGYFE   69 (144)
T ss_pred             CEEEEEEEEECC-ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----------EEEEEEc
Confidence            579999999964 67999999999999999999999999999999999999999999999884          4699999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |                                                   ||+||+||++|||||+.+|+++||||||
T Consensus        70 ~---------------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~   98 (144)
T cd03221          70 Q---------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPT   98 (144)
T ss_pred             c---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            8                                                   9999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCE
Q psy7367         161 SGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGK  208 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~  208 (251)
                      ++||+.++..+.+.++++  +.|||++||+++++..+||++++|++|+
T Consensus        99 ~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~  144 (144)
T cd03221          99 NHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK  144 (144)
T ss_pred             cCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence            999999999999999987  4799999999999999999999999985

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>KOG0055|consensus

Probab=100.00  E-value=4.8e-46  Score=369.89  Aligned_cols=219  Identities=28%  Similarity=0.443  Sum_probs=190.0

Q ss_pred             CEEEeEEEEeCCC--cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367           1 MAIQNLSKRFPNG--KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~~--~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~   77 (251)
                      ++++||+|+|+.+  .+||+|+||++++|+.+||+|||||||||.+.+|-.++.|++|.|.+||+++++ +.+.+|++||
T Consensus       988 I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~ 1067 (1228)
T KOG0055|consen  988 IEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIG 1067 (1228)
T ss_pred             EEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcc
Confidence            5789999999743  469999999999999999999999999999999999999999999999999976 6778999999


Q ss_pred             EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHc-----------CCCcccCCCCCcCChhHHHHHHHHHH
Q psy7367          78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL-----------GIPHKRTSLANTLSGGMQRKLSVAMA  146 (251)
Q Consensus        78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~kqrv~ia~a  146 (251)
                      .|.|+|.||.. |++|||.|+.  ...+.++    +.++++..           |++.....+..+||||||||+|||||
T Consensus      1068 lVsQEP~LF~~-TIrENI~YG~--~~vs~~e----Ii~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARA 1140 (1228)
T KOG0055|consen 1068 LVSQEPVLFNG-TIRENIAYGS--EEVSEEE----IIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARA 1140 (1228)
T ss_pred             eeccCchhhcc-cHHHHHhccC--CCCCHHH----HHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHH
Confidence            99999999975 9999999982  2244433    33333332           34444455567999999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhcCcc
Q psy7367         147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGY  226 (251)
Q Consensus       147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~  226 (251)
                      ++++|++|||||.||+||.++.+.+-+.|.+...|+|.|+|.|.+..+.. ||.|+|+++|+|++.|+.+++-+.  ++.
T Consensus      1141 ilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE~GtH~~L~~~--~G~ 1217 (1228)
T KOG0055|consen 1141 ILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQN-ADVIAVLKNGKVVEQGTHDELLAK--RGI 1217 (1228)
T ss_pred             HHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhc-CCEEEEEECCEEEecccHHHHHhC--CCc
Confidence            99999999999999999999999999999999999999999999999975 999999999999999999888763  444


Q ss_pred             eEE
Q psy7367         227 YLS  229 (251)
Q Consensus       227 ~~~  229 (251)
                      |..
T Consensus      1218 Y~~ 1220 (1228)
T KOG0055|consen 1218 YFR 1220 (1228)
T ss_pred             hHH
Confidence            433

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=4.1e-45  Score=357.87  Aligned_cols=200  Identities=23%  Similarity=0.358  Sum_probs=170.7

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++++|++++.+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|++++          +.+|||++
T Consensus       509 L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~----------~~~igyv~  578 (718)
T PLN03073        509 ISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA----------KVRMAVFS  578 (718)
T ss_pred             EEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC----------ceeEEEEe
Confidence            47899999995445699999999999999999999999999999999999999999999864          24699999


Q ss_pred             cCCCCCCCCCHHHHHHHHH-H-hcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367          81 QYNALFDKLTVEEHMWFYS-Q-LKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD  157 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~-~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD  157 (251)
                      |++  ++.+++.++..+.. . .....    .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus       579 Q~~--~~~l~~~~~~~~~~~~~~~~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLD  652 (718)
T PLN03073        579 QHH--VDGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLD  652 (718)
T ss_pred             ccc--cccCCcchhHHHHHHHhcCCCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            986  24456666644322 1 11211    346788999999984 678999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEE-eecCHHHH
Q psy7367         158 EPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ-CCGSSVFL  218 (251)
Q Consensus       158 EPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~  218 (251)
                      |||++||+.++..+.+.+.++ ++ |||++|||++++..+||++++|++|+++ +.|+....
T Consensus       653 EPT~~LD~~s~~~l~~~L~~~-~g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~  712 (718)
T PLN03073        653 EPSNHLDLDAVEALIQGLVLF-QG-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY  712 (718)
T ss_pred             CCCCCCCHHHHHHHHHHHHHc-CC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence            999999999999999988776 34 9999999999999999999999999998 67876644

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1e-45  Score=307.46  Aligned_cols=214  Identities=27%  Similarity=0.399  Sum_probs=183.3

Q ss_pred             CEEEeEEEEeCCC----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChH-Hhhcc
Q psy7367           1 MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMT-TIRRS   75 (251)
Q Consensus         1 l~i~~l~~~y~~~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~-~~~~~   75 (251)
                      +++.|+.+.|..+    ++||+++|++|++|+++.|+|.||||||||+++|+|-++|++|+|.++|.++.+.+. .....
T Consensus         2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~   81 (263)
T COG1101           2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANL   81 (263)
T ss_pred             cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhH
Confidence            4577888887432    579999999999999999999999999999999999999999999999999976433 33457


Q ss_pred             eEEEccCC--CCCCCCCHHHHHHHHHHh---cCCCh---HHHHHHHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHH
Q psy7367          76 LGVCPQYN--ALFDKLTVEEHMWFYSQL---KQVPK---DLAQLEISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAM  145 (251)
Q Consensus        76 i~~v~q~~--~l~~~ltv~e~l~~~~~~---~~~~~---~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~  145 (251)
                      ++-|||+|  ..++.||++||+.+....   ++...   ...++...+.+..+  |+++.++.+++-|||||||-++++.
T Consensus        82 larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~M  161 (263)
T COG1101          82 LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLM  161 (263)
T ss_pred             HHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHH
Confidence            89999998  569999999999986543   22222   22333455566666  5678999999999999999999999


Q ss_pred             HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhh-hC-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367         146 AFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  214 (251)
Q Consensus       146 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l-~~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~  214 (251)
                      |-+++|++|+|||-|++|||...+.++++-.++ .+ +.|.+||||+|+.+..|.+|.++|++|+|+.+-+
T Consensus       162 Atl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~  232 (263)
T COG1101         162 ATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVT  232 (263)
T ss_pred             HhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence            999999999999999999999999999999987 44 8999999999999999999999999999987643

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-44  Score=304.09  Aligned_cols=218  Identities=22%  Similarity=0.324  Sum_probs=192.8

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCeeEEEEcceeCCC-C-hHHhhcce
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML--PVSSGTAKIYNHDIRT-D-MTTIRRSL   76 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~--~p~~G~i~~~g~~~~~-~-~~~~~~~i   76 (251)
                      |+++||+.+-.+.+.+|++|||+|++||+++|+||||||||||.++|+|..  ++++|+|.++|+++.. + ..+.|..|
T Consensus         4 L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~Gi   83 (251)
T COG0396           4 LEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGI   83 (251)
T ss_pred             eEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCC
Confidence            589999999954248999999999999999999999999999999999985  7899999999999965 2 24567899


Q ss_pred             EEEccCCCCCCCCCHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHcCCCc-ccCCCCC-cCChhHHHHHHHHHHHccCC
Q psy7367          77 GVCPQYNALFDKLTVEEHMWFYSQLKQVP---KDLAQLEISNMIVDLGIPH-KRTSLAN-TLSGGMQRKLSVAMAFIGGS  151 (251)
Q Consensus        77 ~~v~q~~~l~~~ltv~e~l~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~-~~~~~~~-~LSgG~kqrv~ia~al~~~p  151 (251)
                      ...||.|.=++..|+.+.|..........   ..+..+++++.++.+++++ +++|.+. .+|||||+|..|+++++.+|
T Consensus        84 fLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~leP  163 (251)
T COG0396          84 FLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEP  163 (251)
T ss_pred             EEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCC
Confidence            99999999999999999998876542211   2355678999999999986 7888886 89999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhc-CEEEEeeCCEEEeecCHHHH
Q psy7367         152 RTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLG-DRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       152 ~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~-d~i~~l~~G~i~~~g~~~~~  218 (251)
                      ++.|||||-||||..+-+.+.+.+.+++ +|.+++++||.-..+..+- |++.+|.+|+|+..|.++..
T Consensus       164 kl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~el~  232 (251)
T COG0396         164 KLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPELA  232 (251)
T ss_pred             CEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCHHHH
Confidence            9999999999999999999999999997 4999999999988887653 99999999999999999543

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=9.3e-45  Score=376.19  Aligned_cols=213  Identities=21%  Similarity=0.341  Sum_probs=186.2

Q ss_pred             CEEEeEEEEeC------------CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CeeEEEEcceeCC
Q psy7367           1 MAIQNLSKRFP------------NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV--SSGTAKIYNHDIR   66 (251)
Q Consensus         1 l~i~~l~~~y~------------~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~   66 (251)
                      ++++||++..+            +++.+|+|+|+++++|++++|+|||||||||||++|+|..++  .+|+|.++|++..
T Consensus       868 ~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~  947 (1470)
T PLN03140        868 MSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK  947 (1470)
T ss_pred             EEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCC
Confidence            35788888863            124699999999999999999999999999999999999763  7899999998763


Q ss_pred             CChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHHHcCCCcccCCCC-----CcCChhHH
Q psy7367          67 TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK---QVPKDLAQLEISNMIVDLGIPHKRTSLA-----NTLSGGMQ  138 (251)
Q Consensus        67 ~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~k  138 (251)
                      .  ...++.+||++|++.+++.+||+||+.|...++   ..+.++..+.++++++.++|.+..++.+     ..||||||
T Consensus       948 ~--~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGer 1025 (1470)
T PLN03140        948 Q--ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025 (1470)
T ss_pred             h--HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHH
Confidence            2  235678999999999999999999999976543   2233445567899999999998888876     58999999


Q ss_pred             HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHH-HHHhhcCEEEEeeC-CEEEeecCH
Q psy7367         139 RKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMD-EADLLGDRIAIIAA-GKLQCCGSS  215 (251)
Q Consensus       139 qrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~-~~~~~~d~i~~l~~-G~i~~~g~~  215 (251)
                      |||+||++|+.+|++|+|||||+|||+.++..+++.|++++ +|+|||++||+++ ++..+||++++|++ |++++.|++
T Consensus      1026 kRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~ 1105 (1470)
T PLN03140       1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPL 1105 (1470)
T ss_pred             HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCc
Confidence            99999999999999999999999999999999999999985 5999999999998 57789999999996 899999985

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=1.3e-44  Score=351.79  Aligned_cols=201  Identities=20%  Similarity=0.268  Sum_probs=164.5

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++++|++ +++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++|..          .++|++
T Consensus         4 l~i~~ls~~~~~-~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~----------~~~~l~   72 (635)
T PRK11147          4 ISIHGAWLSFSD-APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL----------IVARLQ   72 (635)
T ss_pred             EEEeeEEEEeCC-ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC----------EEEEec
Confidence            578999999964 789999999999999999999999999999999999999999999997631          256666


Q ss_pred             cCCCCCCCCCHHHHH------------------------------HHHHHh----cCCChHHHHHHHHHHHHHcCCCccc
Q psy7367          81 QYNALFDKLTVEEHM------------------------------WFYSQL----KQVPKDLAQLEISNMIVDLGIPHKR  126 (251)
Q Consensus        81 q~~~l~~~ltv~e~l------------------------------~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~~~  126 (251)
                      |.+......++.+++                              .++..+    ..........++.++++.+|+.  .
T Consensus        73 q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~  150 (635)
T PRK11147         73 QDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--P  150 (635)
T ss_pred             cCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--C
Confidence            654322223444443                              111111    0001112345788999999997  3


Q ss_pred             CCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367         127 TSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAA  206 (251)
Q Consensus       127 ~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~  206 (251)
                      ++++.+|||||||||+||+||+.+|++|||||||++||+.++..+.++|+++.  .|||+||||.+++..+||++++|++
T Consensus       151 ~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvlivsHd~~~l~~~~d~i~~L~~  228 (635)
T PRK11147        151 DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIFISHDRSFIRNMATRIVDLDR  228 (635)
T ss_pred             CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHhcCeEEEEEC
Confidence            78999999999999999999999999999999999999999999999999884  5999999999999999999999999


Q ss_pred             CEEEe-ecCHH
Q psy7367         207 GKLQC-CGSSV  216 (251)
Q Consensus       207 G~i~~-~g~~~  216 (251)
                      |+++. .|+..
T Consensus       229 G~i~~~~g~~~  239 (635)
T PRK11147        229 GKLVSYPGNYD  239 (635)
T ss_pred             CEEEEecCCHH
Confidence            99974 57654

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=5.9e-45  Score=380.15  Aligned_cols=210  Identities=24%  Similarity=0.386  Sum_probs=184.2

Q ss_pred             CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      |+++||+++|+. .+++|+|+||+|++||.+||+|+||||||||+++|+|+++ ++|+|+++|.++.. ....+|++|+|
T Consensus      1218 I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~ 1296 (1490)
T TIGR01271      1218 MDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGV 1296 (1490)
T ss_pred             EEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEE
Confidence            478999999963 3679999999999999999999999999999999999997 79999999999965 55678999999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCC-----------CCcCChhHHHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSL-----------ANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~kqrv~ia~al  147 (251)
                      +||+|.+|+. |+++||..+.   ...    .+++.++++.+++.+...+.           ...||||||||++|||||
T Consensus      1297 IpQdp~LF~G-TIR~NLdp~~---~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARAL 1368 (1490)
T TIGR01271      1297 IPQKVFIFSG-TFRKNLDPYE---QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSI 1368 (1490)
T ss_pred             EeCCCccCcc-CHHHHhCccc---CCC----HHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHH
Confidence            9999999987 9999996532   112    24577788888775433222           247999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      +++|+|||||||||+||+.+.+.+.+.|++..+++|||++||.++.+.. ||||++|++|+|++.|+|.++..
T Consensus      1369 Lr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271      1369 LSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-CQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred             hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEeCCHHHHHc
Confidence            9999999999999999999999999999998778999999999999986 99999999999999999987653

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.5e-44  Score=306.30  Aligned_cols=197  Identities=20%  Similarity=0.288  Sum_probs=182.9

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEcc-CCCCCCCCCHHH
Q psy7367          15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQ-YNALFDKLTVEE   93 (251)
Q Consensus        15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q-~~~l~~~ltv~e   93 (251)
                      ++|+||||++++||.+||+|+||||||||||+|+|.++|++|+|.++|+-            +++.. .-.+-|.+|.+|
T Consensus        41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v------------~~li~lg~Gf~pelTGre  108 (249)
T COG1134          41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKV------------APLIELGAGFDPELTGRE  108 (249)
T ss_pred             EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceE------------ehhhhcccCCCcccchHH
Confidence            69999999999999999999999999999999999999999999998853            32222 234567899999


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q psy7367          94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE  173 (251)
Q Consensus        94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~  173 (251)
                      |+.+.+.+.+..+++.++++++..+.-+|.++.++|+..+|.||+-|+++|.|...+|++||+||-.+--|+.-+++-.+
T Consensus       109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~  188 (249)
T COG1134         109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLE  188 (249)
T ss_pred             HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhh-hCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhc
Q psy7367         174 LLIKY-KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFA  223 (251)
Q Consensus       174 ~l~~l-~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~  223 (251)
                      .+.++ +++.|||++|||++.+.++|||+++|++|++...|++++....|.
T Consensus       189 rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~  239 (249)
T COG1134         189 RLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYE  239 (249)
T ss_pred             HHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHH
Confidence            99998 578999999999999999999999999999999999988766543

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=100.00  E-value=8.4e-45  Score=354.19  Aligned_cols=191  Identities=19%  Similarity=0.300  Sum_probs=164.5

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|++++|++++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++          +++++|+|
T Consensus       452 i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~----------~~~i~~v~  521 (659)
T TIGR00954       452 IKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA----------KGKLFYVP  521 (659)
T ss_pred             EEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC----------CCcEEEEC
Confidence            47899999995446799999999999999999999999999999999999999999998753          45799999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCCcccCCCC---------CcCChhHHHHHHHHHHHccC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIVDLGIPHKRTSLA---------NTLSGGMQRKLSVAMAFIGG  150 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~kqrv~ia~al~~~  150 (251)
                      |++.+++. |++||+.++....... .....+++.++++.+++.+..+++.         .+||||||||++|||||+.+
T Consensus       522 Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~  600 (659)
T TIGR00954       522 QRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHK  600 (659)
T ss_pred             CCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcC
Confidence            99998887 9999998754321110 1111345778999999987666543         79999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEee
Q psy7367         151 SRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIA  205 (251)
Q Consensus       151 p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~  205 (251)
                      |+++||||||++||+.+++.+.+.+++.  |.|+|++||+++.+ +.||++++|+
T Consensus       601 p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~-~~~d~il~l~  652 (659)
T TIGR00954       601 PQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLW-KYHEYLLYMD  652 (659)
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHH-HhCCEEEEEe
Confidence            9999999999999999999999998774  89999999999987 5799999996

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=5.3e-45  Score=350.93  Aligned_cols=193  Identities=24%  Similarity=0.337  Sum_probs=166.0

Q ss_pred             eEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEE-----------EcceeCCCChHHh-
Q psy7367           5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK-----------IYNHDIRTDMTTI-   72 (251)
Q Consensus         5 ~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~-----------~~g~~~~~~~~~~-   72 (251)
                      +++++|+.+..+|++++ ++++|+++||+||||||||||||+|+|+++|++|+|.           ++|+++....... 
T Consensus        78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~  156 (590)
T PRK13409         78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY  156 (590)
T ss_pred             CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence            58999975456999999 9999999999999999999999999999999999997           8998874322111 


Q ss_pred             --hcceEEEccCCCCCCC---CCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHH
Q psy7367          73 --RRSLGVCPQYNALFDK---LTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        73 --~~~i~~v~q~~~l~~~---ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                        +.++++.+|....++.   .||.|++...         +..++++++++.+++.+..++++.+|||||||||+||+||
T Consensus       157 ~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al  227 (590)
T PRK13409        157 NGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAAL  227 (590)
T ss_pred             ccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence              2346666765444332   3999998641         2235688999999999889999999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCC
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAG  207 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G  207 (251)
                      +.+|++|||||||++||+..+..+.++|+++.+|.|||++|||++++..+||++++|+++
T Consensus       228 ~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~  287 (590)
T PRK13409        228 LRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE  287 (590)
T ss_pred             hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence            999999999999999999999999999999855999999999999999999999999863

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=2.1e-44  Score=373.79  Aligned_cols=208  Identities=19%  Similarity=0.211  Sum_probs=180.8

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC----CCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCC
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML----PVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKL   89 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~----~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~l   89 (251)
                      +++|+|+|+++++||+++|+||||||||||||+|+|+.    +|++|+|.++|+++.......++.++|++|++.+++.+
T Consensus        74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l  153 (1394)
T TIGR00956        74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL  153 (1394)
T ss_pred             ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence            56999999999999999999999999999999999986    57999999999987432234566799999999999999


Q ss_pred             CHHHHHHHHHHhcC-------CChHHHHHH-HHHHHHHcCCCcccCCC-----CCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367          90 TVEEHMWFYSQLKQ-------VPKDLAQLE-ISNMIVDLGIPHKRTSL-----ANTLSGGMQRKLSVAMAFIGGSRTVIL  156 (251)
Q Consensus        90 tv~e~l~~~~~~~~-------~~~~~~~~~-~~~~l~~~~l~~~~~~~-----~~~LSgG~kqrv~ia~al~~~p~llll  156 (251)
                      ||+|++.|....+.       ..+++..++ ++.+++.+||.+.++++     +..|||||||||+||++|+.+|++++|
T Consensus       154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlll  233 (1394)
T TIGR00956       154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCW  233 (1394)
T ss_pred             CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEE
Confidence            99999999776531       223333333 46789999999887765     467999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCH-HHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         157 DEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYM-DEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       157 DEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      ||||+|||+.++..+++.|+++. + |+|||+++|++ +++.+++|++++|++|+++..|+++++...
T Consensus       234 DEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~y  301 (1394)
T TIGR00956       234 DNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQY  301 (1394)
T ss_pred             eCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHH
Confidence            99999999999999999999985 3 89999999996 789999999999999999999998766544

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=1.3e-44  Score=294.55  Aligned_cols=218  Identities=23%  Similarity=0.365  Sum_probs=192.1

Q ss_pred             CEEEeEEEEeCCC--------cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHh
Q psy7367           1 MAIQNLSKRFPNG--------KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~--------~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~   72 (251)
                      ++++|++|.|...        ..+++.|||++++|+.+++||.||||||||.|+|+|+++|++|+|.+||+.+....-..
T Consensus         5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~   84 (267)
T COG4167           5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF   84 (267)
T ss_pred             hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence            5788999988421        25899999999999999999999999999999999999999999999999986433233


Q ss_pred             -hcceEEEccCC--CCCCCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHHHcCC-CcccCCCCCcCChhHHHHHHHHHHH
Q psy7367          73 -RRSLGVCPQYN--ALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIVDLGI-PHKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        73 -~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                       .++|-++||+|  .+-|.+.+-+.+..++++. ........+++.+-|..+|| .+..+-+|..||.||||||++||||
T Consensus        85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARAL  164 (267)
T COG4167          85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARAL  164 (267)
T ss_pred             hhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHH
Confidence             36899999998  4567777888888777754 34455666789999999998 4678889999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      +.+|+++|.||..++||...+.++.+++.+++ + |.+.|+++.++..+..++|.|+||++|++++.|++.++
T Consensus       165 IL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v  237 (267)
T COG4167         165 ILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADV  237 (267)
T ss_pred             hcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhh
Confidence            99999999999999999999999999999985 3 99999999999999999999999999999999998654

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=100.00  E-value=2.6e-44  Score=297.61  Aligned_cols=152  Identities=22%  Similarity=0.300  Sum_probs=137.5

Q ss_pred             EeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCC
Q psy7367           4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYN   83 (251)
Q Consensus         4 ~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~   83 (251)
                      .|++|+|++ +.++++ +|+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+           ++|++|++
T Consensus         4 ~~l~~~~~~-~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----------i~~~~q~~   70 (177)
T cd03222           4 PDCVKRYGV-FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-----------PVYKPQYI   70 (177)
T ss_pred             CCeEEEECC-EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----------EEEEcccC
Confidence            589999964 788998 49999999999999999999999999999999999999999853           78998864


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCC
Q psy7367          84 ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGV  163 (251)
Q Consensus        84 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gL  163 (251)
                      .                                                ||+|||||++|||||+.+|+++||||||++|
T Consensus        71 ~------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~L  102 (177)
T cd03222          71 D------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYL  102 (177)
T ss_pred             C------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence            3                                                9999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEee--cCHH
Q psy7367         164 DPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCC--GSSV  216 (251)
Q Consensus       164 D~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~--g~~~  216 (251)
                      |+.+++.+.+.+.++. + +.|||++||+++++..+||++++|+++..+..  |.|.
T Consensus       103 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~  159 (177)
T cd03222         103 DIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPK  159 (177)
T ss_pred             CHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCc
Confidence            9999999999999984 5 49999999999999999999999998765533  5443

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=2.6e-43  Score=285.86  Aligned_cols=155  Identities=37%  Similarity=0.649  Sum_probs=143.6

Q ss_pred             EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEEc
Q psy7367           2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCP   80 (251)
Q Consensus         2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v~   80 (251)
                      +++|++++|.+ +.+++++||+|++|++++|+||||||||||+++|+|+++|++|+|+++|.++.. ....+++.++|+|
T Consensus         1 ~~~~~~~~~~~-~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~   79 (157)
T cd00267           1 EIENLSFRYGG-RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP   79 (157)
T ss_pred             CeEEEEEEeCC-eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence            37899999964 689999999999999999999999999999999999999999999999998754 2345567899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |                                                   ||+||+||++||+|++.+|++++|||||
T Consensus        80 q---------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~  108 (157)
T cd00267          80 Q---------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPT  108 (157)
T ss_pred             e---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            9                                                   9999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhhC-CCeEEEEeCCHHHHHhhcCEEEEeeCCE
Q psy7367         161 SGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGK  208 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~~-g~tiii~tHd~~~~~~~~d~i~~l~~G~  208 (251)
                      ++||+.++..+.+.+.++.+ +.|++++||+++++..+||++++|++|+
T Consensus       109 ~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~  157 (157)
T cd00267         109 SGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK  157 (157)
T ss_pred             cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence            99999999999999999854 7999999999999999999999999874

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=1.6e-43  Score=367.04  Aligned_cols=211  Identities=20%  Similarity=0.257  Sum_probs=181.2

Q ss_pred             EEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEcceeCCCChHHhhcceEEEccCC
Q psy7367           7 SKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS---SGTAKIYNHDIRTDMTTIRRSLGVCPQYN   83 (251)
Q Consensus         7 ~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~   83 (251)
                      ++++  ++.+|+|+|+.|++||+++|+||||||||||||+|+|+++|+   +|+|.++|+++...  ..++.++|++|++
T Consensus       173 ~k~~--~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~--~~~~~i~yv~Q~d  248 (1470)
T PLN03140        173 AKKT--KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEF--VPRKTSAYISQND  248 (1470)
T ss_pred             CCCc--cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhh--cccceeEEecccc
Confidence            4444  367999999999999999999999999999999999999998   99999999987432  1257899999999


Q ss_pred             CCCCCCCHHHHHHHHHHhcCC----------ChHHH------------------------HHHHHHHHHHcCCCccc---
Q psy7367          84 ALFDKLTVEEHMWFYSQLKQV----------PKDLA------------------------QLEISNMIVDLGIPHKR---  126 (251)
Q Consensus        84 ~l~~~ltv~e~l~~~~~~~~~----------~~~~~------------------------~~~~~~~l~~~~l~~~~---  126 (251)
                      .+++.+||+|++.|..+.++.          .+.+.                        ...++.+++.+||++..   
T Consensus       249 ~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~  328 (1470)
T PLN03140        249 VHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTI  328 (1470)
T ss_pred             cCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCce
Confidence            999999999999998765421          11110                        01256789999998765   


Q ss_pred             --CCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCH-HHHHhhcCEE
Q psy7367         127 --TSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYM-DEADLLGDRI  201 (251)
Q Consensus       127 --~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~-~~~~~~~d~i  201 (251)
                        ++.+..|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++.  .|+|||+++|++ +++..+||++
T Consensus       329 vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~v  408 (1470)
T PLN03140        329 VGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDI  408 (1470)
T ss_pred             eCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheE
Confidence              45678999999999999999999999999999999999999999999999984  389999999996 6888999999


Q ss_pred             EEeeCCEEEeecCHHHHHhh
Q psy7367         202 AIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       202 ~~l~~G~i~~~g~~~~~~~~  221 (251)
                      ++|++|++++.|+++++...
T Consensus       409 ilL~~G~ivy~G~~~~~~~y  428 (1470)
T PLN03140        409 ILLSEGQIVYQGPRDHILEF  428 (1470)
T ss_pred             EEeeCceEEEeCCHHHHHHH
Confidence            99999999999998766543

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=9e-43  Score=288.17  Aligned_cols=157  Identities=24%  Similarity=0.336  Sum_probs=137.0

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367          13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE   92 (251)
Q Consensus        13 ~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~   92 (251)
                      .+++|+|+||+|++|++++|+||||||||||||++.    +++|++.++|.....    .++.++|++|           
T Consensus         7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~----~~~~~~~~~q-----------   67 (176)
T cd03238           7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKF----SRNKLIFIDQ-----------   67 (176)
T ss_pred             eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCccccc----ccccEEEEhH-----------
Confidence            467999999999999999999999999999999985    379999998763211    1345788877           


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHH
Q psy7367          93 EHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGG--SRTVILDEPTSGVDPYSRR  169 (251)
Q Consensus        93 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~--p~llllDEPt~gLD~~~~~  169 (251)
                                           .++++.+++.. ..++++.+||+|||||++|||||+.+  |+++||||||++||+.+++
T Consensus        68 ---------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~  126 (176)
T cd03238          68 ---------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDIN  126 (176)
T ss_pred             ---------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHH
Confidence                                 24688889976 47889999999999999999999999  9999999999999999999


Q ss_pred             HHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEE
Q psy7367         170 SIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQ  210 (251)
Q Consensus       170 ~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~  210 (251)
                      .+.+.|++++ .|.|||++||+++++ ..||++++|.+|+..
T Consensus       127 ~l~~~l~~~~~~g~tvIivSH~~~~~-~~~d~i~~l~~g~~~  167 (176)
T cd03238         127 QLLEVIKGLIDLGNTVILIEHNLDVL-SSADWIIDFGPGSGK  167 (176)
T ss_pred             HHHHHHHHHHhCCCEEEEEeCCHHHH-HhCCEEEEECCCCCC
Confidence            9999999986 599999999999997 479999999776543

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0061|consensus

Probab=100.00  E-value=1.2e-42  Score=335.57  Aligned_cols=219  Identities=28%  Similarity=0.429  Sum_probs=194.8

Q ss_pred             EEEeEEEEeCCC----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC---CeeEEEEcceeCCCChHHhhc
Q psy7367           2 AIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV---SSGTAKIYNHDIRTDMTTIRR   74 (251)
Q Consensus         2 ~i~~l~~~y~~~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~   74 (251)
                      +.+|++....+.    +++|++||.++++||+.||+||+||||||||++|+|-...   .+|+|.+||+...  .+..++
T Consensus        27 ~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~--~~~~~~  104 (613)
T KOG0061|consen   27 SFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRD--SRSFRK  104 (613)
T ss_pred             EEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCc--hhhhhh
Confidence            456777666432    6799999999999999999999999999999999999864   7999999996643  345678


Q ss_pred             ceEEEccCCCCCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHHHcCCCcccCCCCC-----cCChhHHHHHHHHHH
Q psy7367          75 SLGVCPQYNALFDKLTVEEHMWFYSQLKQ---VPKDLAQLEISNMIVDLGIPHKRTSLAN-----TLSGGMQRKLSVAMA  146 (251)
Q Consensus        75 ~i~~v~q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~kqrv~ia~a  146 (251)
                      .+|||.|+..+++.+||+|++.|.+.++-   .+.++.+++++++++.+||....|..++     .+|||||+||+||.-
T Consensus       105 ~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~E  184 (613)
T KOG0061|consen  105 ISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALE  184 (613)
T ss_pred             eeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHH
Confidence            89999999999999999999999987652   3557788899999999999999998887     599999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCH-HHHHhhcCEEEEeeCCEEEeecCHHHHHhhh
Q psy7367         147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYM-DEADLLGDRIAIIAAGKLQCCGSSVFLKNSF  222 (251)
Q Consensus       147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~  222 (251)
                      |+.+|.+|+|||||+|||..+..++++.|++++ +|+|||++-|.+ ..+..+.|++++|.+|++++.|++......+
T Consensus       185 ll~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff  262 (613)
T KOG0061|consen  185 LLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFF  262 (613)
T ss_pred             HHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHH
Confidence            999999999999999999999999999999995 599999999998 5777889999999999999999987665543

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.4e-43  Score=287.85  Aligned_cols=191  Identities=23%  Similarity=0.296  Sum_probs=172.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++.+|++...+ ...++.++||++.+||++.|.||||||||||||+|+|+.+|++|+|+++|..+......+++.+-|+-
T Consensus         3 L~a~~L~~~R~-e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLG   81 (209)
T COG4133           3 LEAENLSCERG-ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLG   81 (209)
T ss_pred             chhhhhhhccC-cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhh
Confidence            45788888885 47899999999999999999999999999999999999999999999999998766555677888998


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      -.+.+=+.+||+||+.|+..+.+...   ...+.++++.+||....|.++.+||-|||+||+|||-+++.++++||||||
T Consensus        82 H~~giK~eLTa~ENL~F~~~~~~~~~---~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~  158 (209)
T COG4133          82 HQPGIKTELTALENLHFWQRFHGSGN---AATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPF  158 (209)
T ss_pred             ccccccchhhHHHHHHHHHHHhCCCc---hhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcc
Confidence            88999899999999999998876411   245889999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhh-hCCCeEEEEeCCHHHHH
Q psy7367         161 SGVDPYSRRSIWELLIKY-KKGRTVILTTHYMDEAD  195 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l-~~g~tiii~tHd~~~~~  195 (251)
                      ++||...+..+-.++... .+|-.||.+||..-.+.
T Consensus       159 taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~  194 (209)
T COG4133         159 TALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA  194 (209)
T ss_pred             cccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence            999999999999999886 46889999999876553

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=8.1e-43  Score=329.88  Aligned_cols=201  Identities=25%  Similarity=0.335  Sum_probs=174.2

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++++|+ ++.+|+++||+|.+|+.+||||+||||||||||+|+|.+.|++|+|...+.          -+++|++
T Consensus         4 i~~~~ls~~~g-~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~----------~~v~~l~   72 (530)
T COG0488           4 ITLENLSLAYG-DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG----------LRVGYLS   72 (530)
T ss_pred             EEEeeeEEeeC-CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC----------ceEEEeC
Confidence            57899999996 588999999999999999999999999999999999999999999987531          2599999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHh-cC-----------------------------CChHHHHHHHHHHHHHcCCCcccCCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQL-KQ-----------------------------VPKDLAQLEISNMIVDLGIPHKRTSLA  130 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~-~~-----------------------------~~~~~~~~~~~~~l~~~~l~~~~~~~~  130 (251)
                      |++.+.+..||.+.+.....- ..                             ......+.++..++..+|+.+. ++++
T Consensus        73 Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~  151 (530)
T COG0488          73 QEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPV  151 (530)
T ss_pred             CCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCch
Confidence            999999988999988653210 00                             0001123567888999999877 8999


Q ss_pred             CcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEE
Q psy7367         131 NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ  210 (251)
Q Consensus       131 ~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~  210 (251)
                      ++||||||.||+||+||+.+|++|||||||++||..+...+-+.|.++. | |||+||||-.++..+|++|+.++.|++.
T Consensus       152 ~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-g-tviiVSHDR~FLd~V~t~I~~ld~g~l~  229 (530)
T COG0488         152 SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIVVSHDRYFLDNVATHILELDRGKLT  229 (530)
T ss_pred             hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEEEeCCHHHHHHHhhheEEecCCcee
Confidence            9999999999999999999999999999999999999999999999765 4 9999999999999999999999999886


Q ss_pred             e-ecCH
Q psy7367         211 C-CGSS  215 (251)
Q Consensus       211 ~-~g~~  215 (251)
                      . .|.-
T Consensus       230 ~y~Gny  235 (530)
T COG0488         230 PYKGNY  235 (530)
T ss_pred             EecCCH
Confidence            4 4543

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=100.00  E-value=1.9e-42  Score=317.03  Aligned_cols=218  Identities=24%  Similarity=0.448  Sum_probs=182.6

Q ss_pred             CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      +.++++++.-++ .+++++++||++.+||.+|||||||||||||.|+|.|..+|.+|.|++||-++.. +.+.+-++|||
T Consensus       335 L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGY  414 (580)
T COG4618         335 LSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGY  414 (580)
T ss_pred             eeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCc
Confidence            467888886543 3689999999999999999999999999999999999999999999999999976 45567799999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHH-----HHHHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLA-----QLEISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGS  151 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p  151 (251)
                      +||+-.||+. ||.|||.=+..  ..+.+..     ...+.+++-.+  |.+.....--..||||||||+++||||..+|
T Consensus       415 LPQdVeLF~G-TIaeNIaRf~~--~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P  491 (580)
T COG4618         415 LPQDVELFDG-TIAENIARFGE--EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDP  491 (580)
T ss_pred             CcccceecCC-cHHHHHHhccc--cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCC
Confidence            9999999998 99999954321  1122111     11244454444  3444444455699999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhh
Q psy7367         152 RTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSF  222 (251)
Q Consensus       152 ~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~  222 (251)
                      .+++||||-|+||......+.+.|.+.+ +|.|+|++||.+..+. .+|+|++|++|++...|+.+++-.+.
T Consensus       492 ~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~~FG~r~eVLa~~  562 (580)
T COG4618         492 FLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALA-SVDKILVLQDGRIAAFGPREEVLAKV  562 (580)
T ss_pred             cEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHh-hcceeeeecCChHHhcCCHHHHHHHh
Confidence            9999999999999999999999999986 6999999999998886 59999999999999999988775554

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=3.5e-43  Score=278.00  Aligned_cols=200  Identities=21%  Similarity=0.388  Sum_probs=175.4

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEcceeCCCChHHhhcceE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS---SGTAKIYNHDIRTDMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~   77 (251)
                      ++++|++.+.++ ...|-++||+|.+|||+.|+||+|||||||+.-+.|.+.+.   +|+++++++++.. .+..++++|
T Consensus         3 l~l~nvsl~l~g-~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~-lPa~qRq~G   80 (213)
T COG4136           3 LCLKNVSLRLPG-SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM-LPAAQRQIG   80 (213)
T ss_pred             eeeeeeeecCCC-ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccc-cchhhhhee
Confidence            478999998864 78999999999999999999999999999999999999875   8999999999854 334578999


Q ss_pred             EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367          78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD  157 (251)
Q Consensus        78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD  157 (251)
                      ++||++.+||+++|.+|+.|...- .++.+..++.+..++++.+|....++.|.+||||||-||++-|+|+.+|+.++||
T Consensus        81 iLFQD~lLFphlsVg~Nl~fAlp~-~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLD  159 (213)
T COG4136          81 ILFQDALLFPHLSVGQNLLFALPA-TLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLD  159 (213)
T ss_pred             eeecccccccccccccceEEecCc-ccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeC
Confidence            999999999999999999886432 1223345667899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHh-hh-CCCeEEEEeCCHHHHHhhcCEEEEe
Q psy7367         158 EPTSGVDPYSRRSIWELLIK-YK-KGRTVILTTHYMDEADLLGDRIAII  204 (251)
Q Consensus       158 EPt~gLD~~~~~~l~~~l~~-l~-~g~tiii~tHd~~~~~~~~d~i~~l  204 (251)
                      ||+|.||..-+.++.++.-. .+ .|..+|++|||.+.+. ...|++-|
T Consensus       160 EPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-agsrVie~  207 (213)
T COG4136         160 EPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP-AGSRVIEM  207 (213)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-CCCeeeee
Confidence            99999999999999998754 55 4999999999999987 45666554

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=7.3e-43  Score=342.01  Aligned_cols=212  Identities=18%  Similarity=0.208  Sum_probs=166.4

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC---CCCeeEEEEcceeCCC-C--h-----
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML---PVSSGTAKIYNHDIRT-D--M-----   69 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~---~p~~G~i~~~g~~~~~-~--~-----   69 (251)
                      |+++|++++|++ +.+|+|+||+|++|+++||+||||||||||||+|+|..   .|++|+|.+.++.+.. .  .     
T Consensus       178 I~i~nls~~y~~-~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~  256 (718)
T PLN03073        178 IHMENFSISVGG-RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVL  256 (718)
T ss_pred             EEEceEEEEeCC-CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHH
Confidence            578999999964 67999999999999999999999999999999999964   6889999876654311 0  0     


Q ss_pred             -------HHhhcceEEEccCCCCCCCCCHHHHH-----------------HH-HHHhcCCChHHHHHHHHHHHHHcCCC-
Q psy7367          70 -------TTIRRSLGVCPQYNALFDKLTVEEHM-----------------WF-YSQLKQVPKDLAQLEISNMIVDLGIP-  123 (251)
Q Consensus        70 -------~~~~~~i~~v~q~~~l~~~ltv~e~l-----------------~~-~~~~~~~~~~~~~~~~~~~l~~~~l~-  123 (251)
                             ..+++.++|++|.+.+... ++.++.                 .- ...+..........++.+++..+|+. 
T Consensus       257 ~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~  335 (718)
T PLN03073        257 NTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTP  335 (718)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCCh
Confidence                   0123457788886543221 111111                 10 00111111123455788899999996 


Q ss_pred             cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEE
Q psy7367         124 HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAI  203 (251)
Q Consensus       124 ~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~  203 (251)
                      +..++++.+|||||||||+||+||+.+|++|||||||++||+.++..+.++|+++  +.|||+||||.+++..+||++++
T Consensus       336 ~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d~i~~  413 (718)
T PLN03073        336 EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVTDILH  413 (718)
T ss_pred             HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEE
Confidence            5678899999999999999999999999999999999999999999999999887  68999999999999999999999


Q ss_pred             eeCCEEE-eecCHH
Q psy7367         204 IAAGKLQ-CCGSSV  216 (251)
Q Consensus       204 l~~G~i~-~~g~~~  216 (251)
                      |++|++. +.|+..
T Consensus       414 l~~g~i~~~~g~~~  427 (718)
T PLN03073        414 LHGQKLVTYKGDYD  427 (718)
T ss_pred             EECCEEEEeCCCHH
Confidence            9999996 566653

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=5.8e-42  Score=358.53  Aligned_cols=202  Identities=24%  Similarity=0.340  Sum_probs=168.7

Q ss_pred             CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v   79 (251)
                      ++++|++++|++ .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|            +|+|+
T Consensus       637 i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i~yv  704 (1522)
T TIGR00957       637 ITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------------SVAYV  704 (1522)
T ss_pred             EEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC------------EEEEE
Confidence            478999999964 25799999999999999999999999999999999999999999999986            49999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHH--HHHHHHcC-----CCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEI--SNMIVDLG-----IPHKRTSLANTLSGGMQRKLSVAMAFIGGSR  152 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~--~~~l~~~~-----l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~  152 (251)
                      +|++.+++ .|++||+.|+...   ..++..+.+  ..+.+.++     .....+.+..+||||||||++||||++.+|+
T Consensus       705 ~Q~~~l~~-~Ti~eNI~~g~~~---~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~  780 (1522)
T TIGR00957       705 PQQAWIQN-DSLRENILFGKAL---NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD  780 (1522)
T ss_pred             cCCccccC-CcHHHHhhcCCcc---CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            99999876 6999999986432   122211111  11222222     2234566788999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHh---hhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         153 TVILDEPTSGVDPYSRRSIWELLIK---YKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       153 llllDEPt~gLD~~~~~~l~~~l~~---l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      ++|||||||+||+...+.+++.+.+   +.+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus       781 illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~g~~~~l~  849 (1522)
T TIGR00957       781 IYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKISEMGSYQELL  849 (1522)
T ss_pred             EEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEEeeCCHHHHH
Confidence            9999999999999999999999865   3458999999999999876 9999999999999999987653

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>KOG0056|consensus

Probab=100.00  E-value=7.7e-43  Score=318.19  Aligned_cols=217  Identities=24%  Similarity=0.394  Sum_probs=183.7

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      ++++|+++.|..++++|+||||++.+|+.++|+||+|+||||++|+|..+...++|.|.+||+|+.. ....+|++||.|
T Consensus       538 i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVV  617 (790)
T KOG0056|consen  538 IEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVV  617 (790)
T ss_pred             EEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcc
Confidence            5789999999777999999999999999999999999999999999999999999999999999965 345689999999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHH--HHH-HHcCCCccc----CCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEIS--NMI-VDLGIPHKR----TSLANTLSGGMQRKLSVAMAFIGGSR  152 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~--~~l-~~~~l~~~~----~~~~~~LSgG~kqrv~ia~al~~~p~  152 (251)
                      ||+..+|++ |+..|+.|+..-  .+.++..+.++  .+= ..+++.+-.    ..+.-.|||||||||+|||+++..|.
T Consensus       618 PQDtvLFNd-TI~yNIryak~~--AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~  694 (790)
T KOG0056|consen  618 PQDTVLFND-TILYNIRYAKPS--ASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPS  694 (790)
T ss_pred             cCcceeecc-eeeeheeecCCC--CChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCc
Confidence            999999986 999999885321  12222222111  111 113343333    33455899999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         153 TVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       153 llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      +++|||.||+||..+.+.+-..|.++..++|-|++.|.+..+-. ||-|+++++|.|++.|..+++-..
T Consensus       695 iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivn-AD~ILvi~~G~IvErG~HeeLl~r  762 (790)
T KOG0056|consen  695 IILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVN-ADLILVISNGRIVERGRHEELLKR  762 (790)
T ss_pred             EEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheec-ccEEEEEeCCeEeecCcHHHHHhc
Confidence            99999999999999999999999999999999999999999975 999999999999999999877554

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=5.9e-42  Score=358.01  Aligned_cols=199  Identities=25%  Similarity=0.370  Sum_probs=167.4

Q ss_pred             CEEEeEEEEeCC--CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPN--GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~--~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~   78 (251)
                      ++++|++++|+.  ++++|+|+||+|++||.++|+||+|||||||+++|+|+++|++|.+.           .++..|+|
T Consensus       615 I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~-----------~~~~~Iay  683 (1495)
T PLN03232        615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV-----------VIRGSVAY  683 (1495)
T ss_pred             EEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE-----------EecCcEEE
Confidence            478999999963  25799999999999999999999999999999999999999998763           23568999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCcCChhHHHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----------KRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      |+|+|.+|+. |++|||.|+..   ...    ++.+++++..++.+           ........||||||||++||||+
T Consensus       684 v~Q~p~Lf~g-TIreNI~fg~~---~~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl  755 (1495)
T PLN03232        684 VPQVSWIFNA-TVRENILFGSD---FES----ERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV  755 (1495)
T ss_pred             EcCccccccc-cHHHHhhcCCc---cCH----HHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHH
Confidence            9999999985 99999998642   122    34555666655533           22334457999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHH-HHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWEL-LIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~-l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      .++|+++|||||||+||+...+.+++. +....+++|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus       756 y~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~~~Gt~~eL~  827 (1495)
T PLN03232        756 YSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP-LMDRIILVSEGMIKEEGTFAELS  827 (1495)
T ss_pred             hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHH-hCCEEEEEeCCEEEEecCHHHHH
Confidence            999999999999999999999988765 555557899999999998875 59999999999999999987664

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=2.1e-41  Score=353.51  Aligned_cols=192  Identities=22%  Similarity=0.305  Sum_probs=158.9

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHH
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEE   93 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e   93 (251)
                      +++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++|            +|+|++|++.+++. |++|
T Consensus       439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g------------~iayv~Q~~~l~~~-Ti~e  505 (1490)
T TIGR01271       439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------RISFSPQTSWIMPG-TIKD  505 (1490)
T ss_pred             CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC------------EEEEEeCCCccCCc-cHHH
Confidence            3589999999999999999999999999999999999999999999987            39999999999985 9999


Q ss_pred             HHHHHHHhcCCChHHHHH--HHHHHHHHcCC--CcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q psy7367          94 HMWFYSQLKQVPKDLAQL--EISNMIVDLGI--PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRR  169 (251)
Q Consensus        94 ~l~~~~~~~~~~~~~~~~--~~~~~l~~~~l--~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~  169 (251)
                      |+.|+..+......+..+  .+.+.++.+..  ......++..||||||||++||||++.+|+++||||||++||+..++
T Consensus       506 NI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~  585 (1490)
T TIGR01271       506 NIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEK  585 (1490)
T ss_pred             HHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence            999864321100011111  12223333322  22345668899999999999999999999999999999999999999


Q ss_pred             HHHHH-HHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         170 SIWEL-LIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       170 ~l~~~-l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      .+++. +..+.+++|+|++||+++.+.. ||++++|++|+++..|+++++.
T Consensus       586 ~i~~~~l~~~~~~~tvilvtH~~~~~~~-ad~ii~l~~g~i~~~g~~~~l~  635 (1490)
T TIGR01271       586 EIFESCLCKLMSNKTRILVTSKLEHLKK-ADKILLLHEGVCYFYGTFSELQ  635 (1490)
T ss_pred             HHHHHHHHHHhcCCeEEEEeCChHHHHh-CCEEEEEECCEEEEEcCHHHHH
Confidence            99985 5666679999999999999875 9999999999999999987664

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=2.4e-41  Score=354.38  Aligned_cols=198  Identities=24%  Similarity=0.386  Sum_probs=168.2

Q ss_pred             CEEEeEEEEeCC--CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCe-eEEEEcceeCCCChHHhhcceE
Q psy7367           1 MAIQNLSKRFPN--GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSS-GTAKIYNHDIRTDMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~--~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~-G~i~~~g~~~~~~~~~~~~~i~   77 (251)
                      ++++|++++|+.  .+++|+|+||+|++|+.++|+||+|||||||+++|+|.++|++ |+|.+            +.+|+
T Consensus       615 I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l------------~~~Ia  682 (1622)
T PLN03130        615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI------------RGTVA  682 (1622)
T ss_pred             eEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE------------cCeEE
Confidence            578999999963  2579999999999999999999999999999999999999999 99974            45799


Q ss_pred             EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCcCChhHHHHHHHHHH
Q psy7367          78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----------KRTSLANTLSGGMQRKLSVAMA  146 (251)
Q Consensus        78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrv~ia~a  146 (251)
                      ||+|+|.+|+. |++|||.|+..+   .    +++..++++..+|.+           ........||||||||++||||
T Consensus       683 yv~Q~p~Lfng-TIreNI~fg~~~---d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARA  754 (1622)
T PLN03130        683 YVPQVSWIFNA-TVRDNILFGSPF---D----PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARA  754 (1622)
T ss_pred             EEcCccccCCC-CHHHHHhCCCcc---c----HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHH
Confidence            99999999985 999999986432   1    234556666665533           2234455799999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHH-HHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         147 FIGGSRTVILDEPTSGVDPYSRRSIWE-LLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       147 l~~~p~llllDEPt~gLD~~~~~~l~~-~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +..+|+++|||||||+||+...+.+++ .+....+++|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus       755 ly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~e~Gt~~eL~  827 (1622)
T PLN03130        755 VYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLS-QVDRIILVHEGMIKEEGTYEELS  827 (1622)
T ss_pred             HhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHH-hCCEEEEEeCCEEEEeCCHHHHH
Confidence            999999999999999999999988865 5555557899999999998876 59999999999999999987664

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.6e-41  Score=273.35  Aligned_cols=212  Identities=25%  Similarity=0.403  Sum_probs=175.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEccee-----CCC----Ch-H
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD-----IRT----DM-T   70 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~-----~~~----~~-~   70 (251)
                      +++.++||.|+. ....+||||++.|||+.||+|++||||||||+||++-+.|++|+|.|.-.+     +-.    .. .
T Consensus         7 L~V~~lsk~Yg~-~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~   85 (258)
T COG4107           7 LSVSGLSKLYGP-GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRR   85 (258)
T ss_pred             eeehhhhhhhCC-CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHH
Confidence            578899999975 568999999999999999999999999999999999999999999996532     111    11 1


Q ss_pred             HhhcceEEEccCCC--CCCCCCHHHHH-----HHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHH
Q psy7367          71 TIRRSLGVCPQYNA--LFDKLTVEEHM-----WFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLS  142 (251)
Q Consensus        71 ~~~~~i~~v~q~~~--l~~~ltv~e~l-----~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~  142 (251)
                      -.|..-|+|.|+|.  +-...+.--|+     +.+.+-++    ..++.+.++|+++.++ ...+..|..+||||+||+.
T Consensus        86 L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG----~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQ  161 (258)
T COG4107          86 LLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG----NIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQ  161 (258)
T ss_pred             HhhhccceeecCccccceeeeccCCccchhHHhhhhhhhh----hHHHHHHHHHHhcccCcccccCcccccchHHHHHHH
Confidence            23456899999984  32222222233     23333333    3455678899999997 5678899999999999999


Q ss_pred             HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHH
Q psy7367         143 VAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  217 (251)
Q Consensus       143 ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~  217 (251)
                      |||-|+..|+++++||||.|||...+..++++++.+- + +.+++++|||+..+.-++||.++|++|++++.|-.+.
T Consensus       162 iARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDr  238 (258)
T COG4107         162 IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDR  238 (258)
T ss_pred             HHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccccccc
Confidence            9999999999999999999999999999999999984 5 9999999999999999999999999999999986543

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=5.1e-40  Score=282.06  Aligned_cols=193  Identities=21%  Similarity=0.316  Sum_probs=140.3

Q ss_pred             CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHH-HHHhCCCCCCeeEEEEcc-------ee---CCC-ChHHhh-cceEE
Q psy7367          12 NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTI-SMLMGMLPVSSGTAKIYN-------HD---IRT-DMTTIR-RSLGV   78 (251)
Q Consensus        12 ~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLl-k~l~Gl~~p~~G~i~~~g-------~~---~~~-~~~~~~-~~i~~   78 (251)
                      .+..+|+++||+|++||+++|+||||||||||+ .++.     .+|++.+..       ..   +.. .....+ ...++
T Consensus         6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (226)
T cd03270           6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAI   80 (226)
T ss_pred             chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceE
Confidence            346799999999999999999999999999995 4443     134332210       00   000 000111 23445


Q ss_pred             EccCCC--CCCCCCHHH---HHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccCC-
Q psy7367          79 CPQYNA--LFDKLTVEE---HMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGGS-  151 (251)
Q Consensus        79 v~q~~~--l~~~ltv~e---~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~p-  151 (251)
                      .+|++.  +.+..++..   ...+...+..  ......+ .++++.+++.+ ..++++.+||||||||++|||||+.+| 
T Consensus        81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~  157 (226)
T cd03270          81 AIDQKTTSRNPRSTVGTVTEIYDYLRLLFA--RVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLT  157 (226)
T ss_pred             EecCCCCCCCCCccHHHHHHHHHHHHHHhh--hhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCC
Confidence            555542  234445442   2222221211  1112223 57899999986 579999999999999999999999998 


Q ss_pred             -CEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe------eCCEEEeec
Q psy7367         152 -RTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCG  213 (251)
Q Consensus       152 -~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l------~~G~i~~~g  213 (251)
                       ++|||||||+|||+..+..++++|++++ +|.|||++|||++++. +||++++|      ++|+|+++|
T Consensus       158 ~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~-~~d~i~~l~~~~~~~~G~iv~~g  226 (226)
T cd03270         158 GVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR-AADHVIDIGPGAGVHGGEIVAQG  226 (226)
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHH-hCCEEEEeCCCccccCCEEEecC
Confidence             5999999999999999999999999985 5899999999999974 89999999      999999875

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1e-40  Score=268.78  Aligned_cols=206  Identities=21%  Similarity=0.382  Sum_probs=182.3

Q ss_pred             CEEEeEEEEeC----CC--cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEccee--C---CCCh
Q psy7367           1 MAIQNLSKRFP----NG--KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD--I---RTDM   69 (251)
Q Consensus         1 l~i~~l~~~y~----~~--~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~--~---~~~~   69 (251)
                      +.++|++|+|-    ++  -++++++||+++.|||+++-||||||||||||+|-|-+.|++|+|++....  +   ....
T Consensus         5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p   84 (235)
T COG4778           5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP   84 (235)
T ss_pred             eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence            46889999982    12  369999999999999999999999999999999999999999999996543  2   1122


Q ss_pred             H---Hh-hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHH
Q psy7367          70 T---TI-RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVA  144 (251)
Q Consensus        70 ~---~~-~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia  144 (251)
                      .   +. ++.||||.|.....|..+..|-++-+..-++.+.+..+.++..++.++++.+ +..-.|..+||||||||.||
T Consensus        85 r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIa  164 (235)
T COG4778          85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIA  164 (235)
T ss_pred             HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhh
Confidence            1   23 4689999999888898888999988888888999889999999999999975 55778999999999999999


Q ss_pred             HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367         145 MAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAA  206 (251)
Q Consensus       145 ~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~  206 (251)
                      |.++.+-++|+|||||++||..++..+.++|.+.+ +|.++|=+-||-+.=+..|||++.|..
T Consensus       165 Rgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~  227 (235)
T COG4778         165 RGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA  227 (235)
T ss_pred             hhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence            99999999999999999999999999999999986 699999999999999999999988754

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=7.2e-40  Score=342.71  Aligned_cols=189  Identities=23%  Similarity=0.370  Sum_probs=160.3

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367          13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE   92 (251)
Q Consensus        13 ~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~   92 (251)
                      ++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.            ++|+|+||++.+++ .|++
T Consensus       672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~------------~~i~yv~Q~~~l~~-~Tv~  738 (1560)
T PTZ00243        672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------------RSIAYVPQQAWIMN-ATVR  738 (1560)
T ss_pred             CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC------------CeEEEEeCCCccCC-CcHH
Confidence            3679999999999999999999999999999999999999999999862            46999999999875 6999


Q ss_pred             HHHHHHHHhcCCChHHHH-----HHHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q psy7367          93 EHMWFYSQLKQVPKDLAQ-----LEISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDP  165 (251)
Q Consensus        93 e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~  165 (251)
                      ||+.|+....   .+...     ..+++.++.+  |+....++++.+||||||||++|||||+.+|+++||||||++||+
T Consensus       739 enI~~~~~~~---~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~  815 (1560)
T PTZ00243        739 GNILFFDEED---AARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA  815 (1560)
T ss_pred             HHHHcCChhh---HHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence            9999853211   11111     1234456666  677777888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-HhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         166 YSRRSIWELL-IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       166 ~~~~~l~~~l-~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      ...+.+++.+ ....+|+|+|++||+++.+. .||++++|++|++++.|+.+++
T Consensus       816 ~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i~~~G~~~~l  868 (1560)
T PTZ00243        816 HVGERVVEECFLGALAGKTRVLATHQVHVVP-RADYVVALGDGRVEFSGSSADF  868 (1560)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEecCHHHH
Confidence            9999888754 33345899999999999985 6999999999999999998765

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.6e-41  Score=300.84  Aligned_cols=222  Identities=25%  Similarity=0.409  Sum_probs=185.4

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-hHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~v   79 (251)
                      +.+.++++.|...+++|+++||++++|+.++++||+|+||||++++|..++.+++|.|.++|+++... ...+|+.||.|
T Consensus       263 v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~V  342 (497)
T COG5265         263 VAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIV  342 (497)
T ss_pred             EEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcC
Confidence            35789999997778999999999999999999999999999999999999999999999999999653 35678999999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHH-----HHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL-----EISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR  152 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~  152 (251)
                      ||+..||++ |.+.|+.++..-.  ..++...     ++...++.+  |++.....+.-.|||||||||+|||+++.+|+
T Consensus       343 PQDtvLFND-ti~yni~ygr~~a--t~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~  419 (497)
T COG5265         343 PQDTVLFND-TIAYNIKYGRPDA--TAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPP  419 (497)
T ss_pred             cccceehhh-hHHHHHhccCccc--cHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCC
Confidence            999999986 9999998864321  1221111     122223332  22333334455899999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhcCcceE
Q psy7367         153 TVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYL  228 (251)
Q Consensus       153 llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~  228 (251)
                      +++|||.||+||....+.+...|++...|.|-+++.|.+..+.. ||.|++|++|+|++.|+.+++-..  .+.|.
T Consensus       420 il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~-adeiivl~~g~i~erg~h~~ll~~--~g~ya  492 (497)
T COG5265         420 ILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID-ADEIIVLDNGRIVERGTHEELLAA--GGLYA  492 (497)
T ss_pred             EEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccC-CceEEEeeCCEEEecCcHHHHHHc--CChHH
Confidence            99999999999999999999999999999999999999999986 999999999999999998877554  44443

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=1.5e-38  Score=300.77  Aligned_cols=198  Identities=26%  Similarity=0.334  Sum_probs=171.8

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|+++.|++++.+++++||.|.+|+.+||+||||+|||||||+|+|...|.+|+|.+.-          .-++||+.
T Consensus       322 l~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~----------~v~igyf~  391 (530)
T COG0488         322 LEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE----------TVKIGYFD  391 (530)
T ss_pred             EEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC----------ceEEEEEE
Confidence            47899999996557899999999999999999999999999999999999999999998742          13599999


Q ss_pred             cCC-CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367          81 QYN-ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE  158 (251)
Q Consensus        81 q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE  158 (251)
                      |+. .+.+..|+.|++.-...-      .....++.+|..|++. +...+++..||||||-|+.+|+.++.+|.+|||||
T Consensus       392 Q~~~~l~~~~t~~d~l~~~~~~------~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDE  465 (530)
T COG0488         392 QHRDELDPDKTVLEELSEGFPD------GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDE  465 (530)
T ss_pred             ehhhhcCccCcHHHHHHhhCcc------ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcC
Confidence            987 445777999998653211      1145688999999997 56688999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEee-cCHHH
Q psy7367         159 PTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC-GSSVF  217 (251)
Q Consensus       159 Pt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~-g~~~~  217 (251)
                      ||+.||..+++.+.+.|.++.  -|||+||||..++.++|++++.+.+ ++... |+..+
T Consensus       466 PTNhLDi~s~~aLe~aL~~f~--Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~  522 (530)
T COG0488         466 PTNHLDIESLEALEEALLDFE--GTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYED  522 (530)
T ss_pred             CCccCCHHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHH
Confidence            999999999999999999885  6899999999999999999999998 55543 66543

>KOG0054|consensus

Probab=100.00  E-value=4e-39  Score=326.35  Aligned_cols=212  Identities=24%  Similarity=0.342  Sum_probs=185.1

Q ss_pred             CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      |+++|++.+|..+ ..||++|||+|++||.+||+|+.|||||||+++|.++..|.+|+|.+||.|+.. ...++|++++.
T Consensus      1139 I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsI 1218 (1381)
T KOG0054|consen 1139 IEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSI 1218 (1381)
T ss_pred             EEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCee
Confidence            5799999999543 579999999999999999999999999999999999999999999999999975 66789999999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-----------cccCCCCCcCChhHHHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-----------HKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      +||+|.+|.+ |++.||.-+.++.   +    +++-++|+..+|.           .....-..++|-||||.++|||||
T Consensus      1219 IPQdPvLFsG-TvR~NLDPf~e~s---D----~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARAL 1290 (1381)
T KOG0054|consen 1219 IPQDPVLFSG-TVRFNLDPFDEYS---D----DEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARAL 1290 (1381)
T ss_pred             eCCCCceecC-ccccccCcccccC---H----HHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHH
Confidence            9999999998 9999996543321   2    2344455555443           233333468999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      +++++||+|||.|+++|+++-..|-+.|++.=+++|||.+.|.++.+.. ||||+||++|++++.++|..+-..
T Consensus      1291 Lr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVlVld~G~v~EfdsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1291 LRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEFDSPAELLSD 1363 (1381)
T ss_pred             hccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEEEeeCCeEeecCChHHHHhC
Confidence            9999999999999999999999999999987778999999999999997 999999999999999999887654

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=100.00  E-value=1.1e-38  Score=252.09  Aligned_cols=132  Identities=33%  Similarity=0.579  Sum_probs=119.4

Q ss_pred             eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEEccCCCCCCCCCHHHHH
Q psy7367          17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHM   95 (251)
Q Consensus        17 l~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~ltv~e~l   95 (251)
                      |+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.. .....++.++|++|++.+++.+|+.|| 
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~-   79 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN-   79 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            789999999999999999999999999999999999999999999999976 345667899999999999999999999 


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCC----CcCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q psy7367          96 WFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLA----NTLSGGMQRKLSVAMAFIGGSRTVILDEPTS  161 (251)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----~~LSgG~kqrv~ia~al~~~p~llllDEPt~  161 (251)
                                  ....+++++++.+++.+..++.+    .+||+|||||++||+||+.+|+++||||||+
T Consensus        80 ------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   80 ------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             ------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             ------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence                        22346788899998877665555    9999999999999999999999999999997

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=1.1e-37  Score=272.41  Aligned_cols=194  Identities=24%  Similarity=0.321  Sum_probs=156.4

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh--------CC--CCCCe-----------eEEEEcceeCCCCh----
Q psy7367          15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLM--------GM--LPVSS-----------GTAKIYNHDIRTDM----   69 (251)
Q Consensus        15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~--------Gl--~~p~~-----------G~i~~~g~~~~~~~----   69 (251)
                      ..|+|+|++|+.|.+++|+|+||||||||++.+.        +.  ..|..           --|.++..++....    
T Consensus         9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~   88 (261)
T cd03271           9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP   88 (261)
T ss_pred             hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence            4699999999999999999999999999998662        11  01211           14667776664311    


Q ss_pred             H-------Hhh----------------cceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-c
Q psy7367          70 T-------TIR----------------RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-K  125 (251)
Q Consensus        70 ~-------~~~----------------~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~  125 (251)
                      .       .+|                ..+.|..++...+.+|||.|++.|+..+.+      ..++.++++.+||.. .
T Consensus        89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~------~~~~~~~L~~vgL~~l~  162 (261)
T cd03271          89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK------IARKLQTLCDVGLGYIK  162 (261)
T ss_pred             HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh------HHHHHHHHHHcCCchhh
Confidence            1       111                124455566666678999999999765532      235678999999987 5


Q ss_pred             cCCCCCcCChhHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEE
Q psy7367         126 RTSLANTLSGGMQRKLSVAMAFIGG---SRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRI  201 (251)
Q Consensus       126 ~~~~~~~LSgG~kqrv~ia~al~~~---p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i  201 (251)
                      .++++.+|||||+||++||++|+.+   |+++||||||+|||+..+..++++|+++. +|.|||++||+++++. .||++
T Consensus       163 l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD~i  241 (261)
T cd03271         163 LGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CADWI  241 (261)
T ss_pred             hcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEE
Confidence            7999999999999999999999996   79999999999999999999999999986 5899999999999986 69999


Q ss_pred             EEe------eCCEEEeecCH
Q psy7367         202 AII------AAGKLQCCGSS  215 (251)
Q Consensus       202 ~~l------~~G~i~~~g~~  215 (251)
                      ++|      ++|++++.|++
T Consensus       242 i~Lgp~~g~~~G~iv~~Gt~  261 (261)
T cd03271         242 IDLGPEGGDGGGQVVASGTP  261 (261)
T ss_pred             EEecCCcCCCCCEEEEeCCC
Confidence            999      89999999874

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=100.00  E-value=6.6e-38  Score=263.74  Aligned_cols=166  Identities=21%  Similarity=0.266  Sum_probs=137.2

Q ss_pred             ee-eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCe---------eEEEEcceeCCCChHHhhcceEEEccCCCC
Q psy7367          16 AV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSS---------GTAKIYNHDIRTDMTTIRRSLGVCPQYNAL   85 (251)
Q Consensus        16 il-~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~---------G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l   85 (251)
                      -+ +++++++++| +++|+||||||||||+++|+|+.+|..         |++.+.|+++...  ..++.|+|+||++..
T Consensus        11 ~~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~vfq~~~~   87 (197)
T cd03278          11 SFADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP--ANFAEVTLTFDNSDG   87 (197)
T ss_pred             CcCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC--CceEEEEEEEEcCCC
Confidence            35 7889999999 999999999999999999999987653         4677777765331  234689999999976


Q ss_pred             CCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc----cCCCEEEEeCCCC
Q psy7367          86 FDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI----GGSRTVILDEPTS  161 (251)
Q Consensus        86 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~----~~p~llllDEPt~  161 (251)
                      +          |.     ...   .+++.++++.   .+..++++.+||+|||||++||++++    .+|+++||||||+
T Consensus        88 ~----------~~-----~~~---~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~  146 (197)
T cd03278          88 R----------YS-----IIS---QGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDA  146 (197)
T ss_pred             c----------ee-----EEe---hhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcc
Confidence            6          11     001   2356667776   55678899999999999999999997    4679999999999


Q ss_pred             CCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367         162 GVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAA  206 (251)
Q Consensus       162 gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~  206 (251)
                      +||+..+..+.+.|++++++.|||++||+++.+ ++||+++.|..
T Consensus       147 ~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~-~~~d~v~~~~~  190 (197)
T cd03278         147 ALDDANVERFARLLKEFSKETQFIVITHRKGTM-EAADRLYGVTM  190 (197)
T ss_pred             cCCHHHHHHHHHHHHHhccCCEEEEEECCHHHH-hhcceEEEEEe
Confidence            999999999999999987689999999999987 57999999874

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.6e-36  Score=278.89  Aligned_cols=199  Identities=24%  Similarity=0.359  Sum_probs=177.6

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC--ChHHhhcceEEEccCC---CCCCCCC
Q psy7367          16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT--DMTTIRRSLGVCPQYN---ALFDKLT   90 (251)
Q Consensus        16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~~~i~~v~q~~---~l~~~lt   90 (251)
                      .++|+||++.+|||+||.|-=|||+|-|+++|.|..++++|+|.++|+++..  +...++..|+|||.+.   .++..++
T Consensus       274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s  353 (500)
T COG1129         274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS  353 (500)
T ss_pred             ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence            4899999999999999999999999999999999999999999999998854  3456788999999874   6889999


Q ss_pred             HHHHHHHHHH--hc---CCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q psy7367          91 VEEHMWFYSQ--LK---QVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD  164 (251)
Q Consensus        91 v~e~l~~~~~--~~---~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD  164 (251)
                      +.+|+.+...  +.   -......++.++++.+.+++. +..++++.+||||.||||.|||.|+.+|++|||||||.|+|
T Consensus       354 I~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGID  433 (500)
T COG1129         354 IAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID  433 (500)
T ss_pred             HHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcc
Confidence            9999988722  11   134445556789999999996 56678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367         165 PYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  214 (251)
Q Consensus       165 ~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~  214 (251)
                      .-++.+++++|+++. +|++||++|-+++|+..+||||+||++|+++.+-+
T Consensus       434 VGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~  484 (500)
T COG1129         434 VGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELD  484 (500)
T ss_pred             cchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEec
Confidence            999999999999995 69999999999999999999999999999987544

>KOG0054|consensus

Probab=100.00  E-value=3.1e-36  Score=305.43  Aligned_cols=199  Identities=26%  Similarity=0.393  Sum_probs=171.3

Q ss_pred             CEEEeEEEEeCC--CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPN--GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~--~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~   78 (251)
                      ++++|.+++.+.  ..+.|+||||+|++|+.+||+||-|||||+||.+|.|-.+..+|+|.++|.            ++|
T Consensus       519 i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs------------iaY  586 (1381)
T KOG0054|consen  519 IEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS------------VAY  586 (1381)
T ss_pred             EEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe------------EEE
Confidence            467889998853  234899999999999999999999999999999999999999999999873            899


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCccc-----------CCCCCcCChhHHHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKR-----------TSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~kqrv~ia~al  147 (251)
                      +||.|.+++. ||+|||.|+..+.       +++.+++++.+.|+...           ..+.-+||||||||++||||+
T Consensus       587 v~Q~pWI~ng-TvreNILFG~~~d-------~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAV  658 (1381)
T KOG0054|consen  587 VPQQPWIQNG-TVRENILFGSPYD-------EERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAV  658 (1381)
T ss_pred             eccccHhhCC-cHHHhhhcCcccc-------HHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHH
Confidence            9999999986 9999999975432       34566667777665432           345569999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh-hhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIK-YKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~-l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      -++++++|||.|+|++|....+.+++-.-. +-+++|+|++||.++.+. .||.|++|++|+|.+.|+.+++.+
T Consensus       659 Y~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~-~ad~Iivl~~G~I~~~Gty~el~~  731 (1381)
T KOG0054|consen  659 YQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLP-HADQIIVLKDGKIVESGTYEELLK  731 (1381)
T ss_pred             hccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhh-hCCEEEEecCCeEecccCHHHHHh
Confidence            999999999999999999999999986654 346899999999888886 599999999999999999987753

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=100.00  E-value=1e-36  Score=263.49  Aligned_cols=194  Identities=18%  Similarity=0.252  Sum_probs=144.0

Q ss_pred             EEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh----------------CCCCCCee--------EE
Q psy7367           3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLM----------------GMLPVSSG--------TA   58 (251)
Q Consensus         3 i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~----------------Gl~~p~~G--------~i   58 (251)
                      ++|. |+|+ +..++.+++     |++++|+||||||||||+++|+                +++.+.+|        +|
T Consensus         6 ~~nf-ksy~-~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i   78 (243)
T cd03272           6 IQGF-KSYK-DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEI   78 (243)
T ss_pred             EeCc-cCcc-cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEE
Confidence            4443 2575 366888876     7899999999999999999998                55566666        66


Q ss_pred             EEcceeC----CCChHHhhcceEEEccCCCCCC-CCCHHHHHHHHHHhcCCChHHHH--HHHHHHHHHcCCCcccCCCCC
Q psy7367          59 KIYNHDI----RTDMTTIRRSLGVCPQYNALFD-KLTVEEHMWFYSQLKQVPKDLAQ--LEISNMIVDLGIPHKRTSLAN  131 (251)
Q Consensus        59 ~~~g~~~----~~~~~~~~~~i~~v~q~~~l~~-~ltv~e~l~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~  131 (251)
                      .+++.+-    ......+++.+++++|+..+++ ..|..|...+...+ +.......  .....+.+.+++.+..++++.
T Consensus        79 ~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~-gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~  157 (243)
T cd03272          79 IFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESA-GFSRSNPYYIVPQGKINSLTNMKQDEQQEMQ  157 (243)
T ss_pred             EEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHc-CCCCCCCcEEEEcCchHHhhhcccccccccc
Confidence            6665332    1112235677999999988877 46776665554433 33321100  001123444566666788999


Q ss_pred             cCChhHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEee
Q psy7367         132 TLSGGMQRKLSVAMAFIG----GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIA  205 (251)
Q Consensus       132 ~LSgG~kqrv~ia~al~~----~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~  205 (251)
                      +||||||||++||+||+.    +|+++||||||++||+.+++.+++.|+++.++++||++||+.+ +.++||++++|.
T Consensus       158 ~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~-~~~~~d~i~~l~  234 (243)
T cd03272         158 QLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPE-LLEVADKFYGVK  234 (243)
T ss_pred             ccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHhhCCEEEEEE
Confidence            999999999999999973    6899999999999999999999999999866888999999865 668999999986

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=3.5e-37  Score=249.40  Aligned_cols=206  Identities=19%  Similarity=0.297  Sum_probs=177.2

Q ss_pred             EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEEc
Q psy7367           2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCP   80 (251)
Q Consensus         2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v~   80 (251)
                      +++|++..-     -|-.+|.++..||++-+||||||||||||-.++|++ |-+|+|.+.|+++.. ...++.++-+|+.
T Consensus         5 qln~v~~~t-----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLs   78 (248)
T COG4138           5 QLNDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLS   78 (248)
T ss_pred             eeccccccc-----cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHh
Confidence            455555432     367889999999999999999999999999999987 569999999999864 3446667778999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHcc-------CCCE
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIG-------GSRT  153 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~-------~p~l  153 (251)
                      |+..-...|.|+.++.++.     +.+.....+.++...+++++++.+.+.+|||||.|||-+|...++       ..++
T Consensus        79 Qqq~p~f~mpV~~YL~L~q-----P~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~L  153 (248)
T COG4138          79 QQQTPPFAMPVWHYLTLHQ-----PDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQL  153 (248)
T ss_pred             hccCCcchhhhhhhhhhcC-----chHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCcccee
Confidence            8766555789999987743     345556678899999999999999999999999999999988765       4579


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         154 VILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       154 lllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      ||+|||.++||...+..+..+|.++. +|.+|||++||++.-.+.||+++.++.|++...|..+++
T Consensus       154 LllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eV  219 (248)
T COG4138         154 LLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEV  219 (248)
T ss_pred             EEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhh
Confidence            99999999999999999999999986 599999999999999999999999999999999987643

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=100.00  E-value=2.1e-37  Score=263.51  Aligned_cols=184  Identities=17%  Similarity=0.224  Sum_probs=145.9

Q ss_pred             EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEcc
Q psy7367           2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQ   81 (251)
Q Consensus         2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q   81 (251)
                      +++|+. +|+ ++.+++++++     ++++|+||||||||||+++|.          +++|.+...   ..++++++++|
T Consensus         7 ~l~nfk-~~~-~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~~---~~~~~i~~~~~   66 (212)
T cd03274           7 VLENFK-SYA-GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRASK---MRQKKLSDLIH   66 (212)
T ss_pred             EEECcc-cCC-CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHHH---hhhhhHHHHhc
Confidence            556665 785 4779999988     899999999999999999997          334544311   11257999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHh--------cCCChHHHHH--HHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHcc--
Q psy7367          82 YNALFDKLTVEEHMWFYSQL--------KQVPKDLAQL--EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIG--  149 (251)
Q Consensus        82 ~~~l~~~ltv~e~l~~~~~~--------~~~~~~~~~~--~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~--  149 (251)
                      +..+++.+|+.+++.++...        ++........  ...++++.+++.+..++++..||+|||||++||+|++.  
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~  146 (212)
T cd03274          67 NSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHH  146 (212)
T ss_pred             CCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcc
Confidence            99999999999987766543        2222111000  12566778888888888999999999999999999974  


Q ss_pred             --CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367         150 --GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAA  206 (251)
Q Consensus       150 --~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~  206 (251)
                        +|++++|||||+|||+.++..+++.+++++++.++|++||+. ++.++|||+++|..
T Consensus       147 ~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~-~~~~~~d~v~~~~~  204 (212)
T cd03274         147 YKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRN-NMFELADRLVGIYK  204 (212)
T ss_pred             cCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcH-HHHHhCCEEEEEEe
Confidence              589999999999999999999999999997788999999995 66789999999974

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=100.00  E-value=3.6e-36  Score=261.84  Aligned_cols=181  Identities=16%  Similarity=0.196  Sum_probs=142.3

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-eeEEEEcce-eCCCC--h-HHhhcceEEEccCC---------CCCCC
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMGMLPVS-SGTAKIYNH-DIRTD--M-TTIRRSLGVCPQYN---------ALFDK   88 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~-~G~i~~~g~-~~~~~--~-~~~~~~i~~v~q~~---------~l~~~   88 (251)
                      .+.+ .+++|+||||||||||+++|++++.|+ .|++++.+. ++...  . ...+..|+++||++         .+.+.
T Consensus        22 ~~~~-~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~  100 (251)
T cd03273          22 GFDP-QFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPE  100 (251)
T ss_pred             cCCC-CeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCce
Confidence            3444 599999999999999999999999886 468888776 43111  1 12245899999985         34567


Q ss_pred             CCHHHHHHHHHHhcC-C-ChHHHHHHHHHHHHHcCCC--------------------cccCCCCCcCChhHHHHHHHHHH
Q psy7367          89 LTVEEHMWFYSQLKQ-V-PKDLAQLEISNMIVDLGIP--------------------HKRTSLANTLSGGMQRKLSVAMA  146 (251)
Q Consensus        89 ltv~e~l~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~--------------------~~~~~~~~~LSgG~kqrv~ia~a  146 (251)
                      +||.+++.+...... . .+....+++.++++.+++.                    +..++++.+||+|||||++||+|
T Consensus       101 ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~a  180 (251)
T cd03273         101 ITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLI  180 (251)
T ss_pred             EEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHH
Confidence            888888865432111 1 1223346788999999986                    44567899999999999999999


Q ss_pred             Hc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEee
Q psy7367         147 FI----GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIA  205 (251)
Q Consensus       147 l~----~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~  205 (251)
                      |+    .+|+++||||||++||+..++.+++.|+++.+|.+||++||+. ++...||+++-+.
T Consensus       181 l~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~-~~~~~~d~v~~~~  242 (251)
T cd03273         181 LALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKE-GMFNNANVLFRTR  242 (251)
T ss_pred             HHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHhCCEEEEEE
Confidence            98    5789999999999999999999999999987789999999995 4455799998775

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=100.00  E-value=6e-35  Score=248.37  Aligned_cols=192  Identities=16%  Similarity=0.158  Sum_probs=140.3

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEe-CCcEEEEEcCCCCcHHHHHHHHhCC-CCCCeeEEEEcc-eeCCCChHHhhcceE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFY-EDQITSFLGHNGAGKTTTISMLMGM-LPVSSGTAKIYN-HDIRTDMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~-~Ge~~~liG~NGaGKSTLlk~l~Gl-~~p~~G~i~~~g-~~~~~~~~~~~~~i~   77 (251)
                      |+++|+. +|.+ .   .+++|+.. +|++++|+||||||||||+++|++. +-+..+....+. .+.. .....+..|+
T Consensus         6 i~l~nf~-~y~~-~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~-~~~~~~~~v~   79 (213)
T cd03279           6 LELKNFG-PFRE-E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVF-APGEDTAEVS   79 (213)
T ss_pred             EEEECCc-CcCC-c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHh-cCCCccEEEE
Confidence            4567777 6633 2   56677654 5899999999999999999999964 334444444321 0110 1112346799


Q ss_pred             EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHcc--------
Q psy7367          78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIG--------  149 (251)
Q Consensus        78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~--------  149 (251)
                      ++||.+....  ++..+       .+.......+.+  .+...++.+..++++.+||+||+||++||+||+.        
T Consensus        80 ~~f~~~~~~~--~~~r~-------~gl~~~~~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~  148 (213)
T cd03279          80 FTFQLGGKKY--RVERS-------RGLDYDQFTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRG  148 (213)
T ss_pred             EEEEECCeEE--EEEEe-------cCCCHHHHHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhcc
Confidence            9999873211  12111       133333222211  2455556777889999999999999999999985        


Q ss_pred             --CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhC-CCeEEEEeCCHHHHHhhcCEEEEeeCCEE
Q psy7367         150 --GSRTVILDEPTSGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKL  209 (251)
Q Consensus       150 --~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i  209 (251)
                        +|+++||||||++||+..+..+.+.+.++++ +.|||++||+++++..+||+++++++|..
T Consensus       149 ~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~  211 (213)
T cd03279         149 GARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG  211 (213)
T ss_pred             CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence              6789999999999999999999999999864 89999999999999999999999999854

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=100.00  E-value=8.8e-33  Score=253.30  Aligned_cols=217  Identities=23%  Similarity=0.325  Sum_probs=190.4

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeC-CC-ChH-HhhcceE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI-RT-DMT-TIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~-~~-~~~-~~~~~i~   77 (251)
                      |++++|+..-..+...+++|||++.+|||+||.|-.|-|-+.|+.+|+|+.+|.+|+|.++|+++ .. ... ..+..++
T Consensus       258 L~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~  337 (501)
T COG3845         258 LEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLA  337 (501)
T ss_pred             EEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCc
Confidence            57899998764445789999999999999999999999999999999999999999999999997 32 333 3457899


Q ss_pred             EEccCC---CCCCCCCHHHHHHHHHHhc------C-CChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHH
Q psy7367          78 VCPQYN---ALFDKLTVEEHMWFYSQLK------Q-VPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMA  146 (251)
Q Consensus        78 ~v~q~~---~l~~~ltv~e~l~~~~~~~------~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~a  146 (251)
                      |||.+.   .+.+.+|+.||+.+.....      + ..+....+.+.++++.|++. .-...++.+||||.+||+-+||-
T Consensus       338 ~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaRE  417 (501)
T COG3845         338 YVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARE  417 (501)
T ss_pred             cCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhh
Confidence            999985   6788999999998855321      1 45667778899999999997 45567899999999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHH
Q psy7367         147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  217 (251)
Q Consensus       147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~  217 (251)
                      |..+|++||+.+||.|||..+.+.+.+.|.+.+ +|++|+++|-|++++..+||||.+|.+|+++...+++.
T Consensus       418 l~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~  489 (501)
T COG3845         418 LARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE  489 (501)
T ss_pred             hccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccccc
Confidence            999999999999999999999999999999986 59999999999999999999999999999998776653

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=100.00  E-value=2.4e-32  Score=283.24  Aligned_cols=204  Identities=17%  Similarity=0.236  Sum_probs=155.7

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHH---------HHhCCCCCCee----E----EEEcceeCCCC-h-------
Q psy7367          15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTIS---------MLMGMLPVSSG----T----AKIYNHDIRTD-M-------   69 (251)
Q Consensus        15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk---------~l~Gl~~p~~G----~----i~~~g~~~~~~-~-------   69 (251)
                      ..|+++||+|++||+++|+|+||||||||++         .|.|...+..+    .    |.++..++... .       
T Consensus       609 ~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQspigr~~rS~~atY~  688 (1809)
T PRK00635        609 HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITRDLPGRSQRSIPLTYI  688 (1809)
T ss_pred             CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecCCCCCCCCCCCceeeh
Confidence            3799999999999999999999999999999         66675433111    1    23333322110 0       


Q ss_pred             ---HHhh---------c-----ceEEEccC---------------------C-----------------CCCCCCCHHHH
Q psy7367          70 ---TTIR---------R-----SLGVCPQY---------------------N-----------------ALFDKLTVEEH   94 (251)
Q Consensus        70 ---~~~~---------~-----~i~~v~q~---------------------~-----------------~l~~~ltv~e~   94 (251)
                         ..+|         +     ...|.|+.                     .                 ..|..+||.|+
T Consensus       689 g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e~L~~~~~~~tI~ev  768 (1809)
T PRK00635        689 KAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLPQVLEVRYKGKNIADI  768 (1809)
T ss_pred             hhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCHHHHhhccCCCCHHHH
Confidence               0111         0     11122331                     0                 14667899999


Q ss_pred             HHHHHHhc---CCChHHHHHHHHHHHHHcCCCcc-cCCCCCcCChhHHHHHHHHHHHc---cCCCEEEEeCCCCCCCHHH
Q psy7367          95 MWFYSQLK---QVPKDLAQLEISNMIVDLGIPHK-RTSLANTLSGGMQRKLSVAMAFI---GGSRTVILDEPTSGVDPYS  167 (251)
Q Consensus        95 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~kqrv~ia~al~---~~p~llllDEPt~gLD~~~  167 (251)
                      +.+...-.   ....++..+++ ++++.+||.+. +++++.+|||||+||++||+||+   .+|+++||||||+|||+.+
T Consensus       769 L~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~  847 (1809)
T PRK00635        769 LEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHD  847 (1809)
T ss_pred             HHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHH
Confidence            98865421   22234455566 58899999886 79999999999999999999997   6999999999999999999


Q ss_pred             HHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEee------CCEEEeecCHHHHHh
Q psy7367         168 RRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIA------AGKLQCCGSSVFLKN  220 (251)
Q Consensus       168 ~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~------~G~i~~~g~~~~~~~  220 (251)
                      ++.++++|.++. +|.|||++||+++++ .+||++++|.      +|++++.|+++++..
T Consensus       848 ~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~  906 (1809)
T PRK00635        848 IKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEELIH  906 (1809)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence            999999999986 599999999999999 7999999996      789999999987643

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=100.00  E-value=2.2e-33  Score=237.43  Aligned_cols=165  Identities=27%  Similarity=0.359  Sum_probs=131.3

Q ss_pred             eeeEEEeCCcEEEEEcCCCCcHHHHHHHHh----CCCCCCeeEEEEcceeCCCChHHhhcceEEEccCC-----CCCCCC
Q psy7367          19 GLNVNFYEDQITSFLGHNGAGKTTTISMLM----GMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYN-----ALFDKL   89 (251)
Q Consensus        19 ~isl~i~~Ge~~~liG~NGaGKSTLlk~l~----Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~-----~l~~~l   89 (251)
                      ..++++.+| +++|+||||||||||+++|.    |..+|++|.+..+.+.+..  ...+..|+++||++     .....+
T Consensus        15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~--~~~~~~v~~~f~~~~~~~~~v~r~~   91 (204)
T cd03240          15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE--GEVRAQVKLAFENANGKKYTITRSL   91 (204)
T ss_pred             ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC--CCCcEEEEEEEEeCCCCEEEEEEEh
Confidence            345677788 99999999999999999995    9999988877622222222  12356799999987     344556


Q ss_pred             CHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHH------HHHHHHHccCCCEEEEeCCCCCC
Q psy7367          90 TVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRK------LSVAMAFIGGSRTVILDEPTSGV  163 (251)
Q Consensus        90 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqr------v~ia~al~~~p~llllDEPt~gL  163 (251)
                      |++||+.+.      +..    ++++.+         ++++.+||+||+||      ++||+|++.+|+++|+||||++|
T Consensus        92 ~~~~~~~~~------~~~----~~~~~~---------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~L  152 (204)
T cd03240          92 AILENVIFC------HQG----ESNWPL---------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNL  152 (204)
T ss_pred             hHhhceeee------chH----HHHHHH---------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCcccc
Confidence            888888652      111    222222         77899999999996      78999999999999999999999


Q ss_pred             CHHHHH-HHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367         164 DPYSRR-SIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAA  206 (251)
Q Consensus       164 D~~~~~-~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~  206 (251)
                      |+..+. .+.+++.+++ + +.+||++||+++.+. .||+++.|.+
T Consensus       153 D~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~-~~d~i~~l~~  197 (204)
T cd03240         153 DEENIEESLAEIIEERKSQKNFQLIVITHDEELVD-AADHIYRVEK  197 (204)
T ss_pred             CHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh-hCCEEEEEee
Confidence            999999 9999999985 4 899999999999875 6999999964

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.5e-34  Score=254.48  Aligned_cols=200  Identities=22%  Similarity=0.373  Sum_probs=167.0

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      ++++|+.+.|.....-+..||++|++||++.|+|.||||||||+++++|+++|++|+|++||+++.. ..+++|+-++-|
T Consensus       323 lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSav  402 (546)
T COG4615         323 LELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAV  402 (546)
T ss_pred             eeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHH
Confidence            5889999999654456899999999999999999999999999999999999999999999999965 567888888888


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcc---cCC--CCCcCChhHHHHHHHHHHHccCCCEE
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK---RTS--LANTLSGGMQRKLSVAMAFIGGSRTV  154 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~--~~~~LSgG~kqrv~ia~al~~~p~ll  154 (251)
                      |.+..+|+.+-..|+-            ...+.++.+++++.+.+.   .+.  .+-.||.|||+|+++..|++-+.+++
T Consensus       403 FsDyhLF~~ll~~e~~------------as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Il  470 (546)
T COG4615         403 FSDYHLFDQLLGPEGK------------ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDIL  470 (546)
T ss_pred             hhhHhhhHhhhCCccC------------CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeE
Confidence            8888888753221111            112456677777776543   333  34589999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHh-hh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367         155 ILDEPTSGVDPYSRRSIWELLIK-YK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  213 (251)
Q Consensus       155 llDEPt~gLD~~~~~~l~~~l~~-l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g  213 (251)
                      ++||-.+.-||.-|+.++..+.- ++ +|+||+.+|||-.-. ..|||++.+++|++++..
T Consensus       471 v~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF-~~ADrll~~~~G~~~e~t  530 (546)
T COG4615         471 VLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYF-IHADRLLEMRNGQLSELT  530 (546)
T ss_pred             EeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhh-hhHHHHHHHhcCceeecc
Confidence            99999999999999999987765 55 599999999996655 479999999999998654

>KOG0927|consensus

Probab=100.00  E-value=2.1e-33  Score=259.11  Aligned_cols=201  Identities=21%  Similarity=0.274  Sum_probs=166.5

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      +.++|++|.|.++..++++++|-|..++.+++|||||||||||||+++|.+.|+.|.|.-.-.          .++++.-
T Consensus       390 i~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H----------~~~~~y~  459 (614)
T KOG0927|consen  390 IMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH----------NKLPRYN  459 (614)
T ss_pred             EEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc----------ccchhhh
Confidence            357899999975557999999999999999999999999999999999999999999864322          2344555


Q ss_pred             cCC--CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367          81 QYN--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD  157 (251)
Q Consensus        81 q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD  157 (251)
                      |+.  .+.-+.++.|++.-.   +.  .....+.++.++.++||+ +....++.+||+|||.||.+|++++.+|.+|+||
T Consensus       460 Qh~~e~ldl~~s~le~~~~~---~~--~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLD  534 (614)
T KOG0927|consen  460 QHLAEQLDLDKSSLEFMMPK---FP--DEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLD  534 (614)
T ss_pred             hhhHhhcCcchhHHHHHHHh---cc--ccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEec
Confidence            553  334455777766432   21  122345688999999998 5667899999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEE-EeecCHHHH
Q psy7367         158 EPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL-QCCGSSVFL  218 (251)
Q Consensus       158 EPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i-~~~g~~~~~  218 (251)
                      |||+|||..+...+.+.|.++.  .+||++|||...+.++++++++..+|.+ .+.|+....
T Consensus       535 EPtnhLDi~tid~laeaiNe~~--Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~y  594 (614)
T KOG0927|consen  535 EPTNHLDIETIDALAEAINEFP--GGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIY  594 (614)
T ss_pred             CCCcCCCchhHHHHHHHHhccC--CceeeeechhhHHHHHHHHhHhhccCceeecCccHHHH
Confidence            9999999999999999998885  4699999999999999999999999876 467776543

>KOG0065|consensus

Probab=100.00  E-value=2.8e-33  Score=279.23  Aligned_cols=202  Identities=24%  Similarity=0.335  Sum_probs=178.6

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--CCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCC
Q psy7367          13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP--VSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLT   90 (251)
Q Consensus        13 ~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~lt   90 (251)
                      .+++|+||+=-++||-.+||+|+|||||||||++|+|-..  ..+|+|.++|.+...  ...+|.+|||-|++.-.+.+|
T Consensus       803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q--~tF~R~~GYvqQ~DiH~~~~T  880 (1391)
T KOG0065|consen  803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ--ETFARVSGYVEQQDIHSPELT  880 (1391)
T ss_pred             ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch--hhhccccceeecccccCcccc
Confidence            4689999999999999999999999999999999999642  347999999998642  456789999999987779999


Q ss_pred             HHHHHHHHHHhc---CCChHHHHHHHHHHHHHcCCCcccCCCCCc----CChhHHHHHHHHHHHccCC-CEEEEeCCCCC
Q psy7367          91 VEEHMWFYSQLK---QVPKDLAQLEISNMIVDLGIPHKRTSLANT----LSGGMQRKLSVAMAFIGGS-RTVILDEPTSG  162 (251)
Q Consensus        91 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----LSgG~kqrv~ia~al~~~p-~llllDEPt~g  162 (251)
                      |+|-|.|.+.++   .++.++..+-++++++.++|++..+.-++.    ||..||+|+.||--|+.+| .||+|||||||
T Consensus       881 VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSG  960 (1391)
T KOG0065|consen  881 VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSG  960 (1391)
T ss_pred             hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCC
Confidence            999999988876   345555557899999999999998888877    9999999999999999999 99999999999


Q ss_pred             CCHHHHHHHHHHHHhhh-CCCeEEEEeCCHH-HHHhhcCEEEEeeC-CEEEeecCHH
Q psy7367         163 VDPYSRRSIWELLIKYK-KGRTVILTTHYMD-EADLLGDRIAIIAA-GKLQCCGSSV  216 (251)
Q Consensus       163 LD~~~~~~l~~~l~~l~-~g~tiii~tHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~  216 (251)
                      ||..+...+++.++++. .|.|||.+-|.+. .+.+..|++++|++ |+.++.|++.
T Consensus       961 LDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen  961 LDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred             ccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence            99999999999999996 5999999999873 45566899999985 6899999864

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=100.00  E-value=1.2e-31  Score=267.63  Aligned_cols=125  Identities=30%  Similarity=0.443  Sum_probs=110.5

Q ss_pred             CCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccCC---CEEEEeCCCCCCC
Q psy7367          89 LTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGGS---RTVILDEPTSGVD  164 (251)
Q Consensus        89 ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~p---~llllDEPt~gLD  164 (251)
                      ||+.|++.|+....+.      .+..++++.+||.. .+++++.+|||||+||+.||++|+.+|   +++||||||+|||
T Consensus       792 ltv~E~l~~f~~~~~i------~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD  865 (943)
T PRK00349        792 MTVEEALEFFEAIPKI------ARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLH  865 (943)
T ss_pred             CcHHHHHHHHHhchhh------hHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCC
Confidence            7899999887654321      23457899999986 578999999999999999999999999   9999999999999


Q ss_pred             HHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe------eCCEEEeecCHHHHHh
Q psy7367         165 PYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVFLKN  220 (251)
Q Consensus       165 ~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l------~~G~i~~~g~~~~~~~  220 (251)
                      +..+..++++|.++. +|.|||++||+++.+. .||+++.|      ++|++++.|+++++..
T Consensus       866 ~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~  927 (943)
T PRK00349        866 FEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVATGTPEEVAK  927 (943)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence            999999999999985 5999999999999986 69999999      7999999999987653

>KOG0927|consensus

Probab=99.97  E-value=8.2e-32  Score=248.59  Aligned_cols=214  Identities=20%  Similarity=0.286  Sum_probs=158.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEE--EcceeCCCCh-HHhh----
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK--IYNHDIRTDM-TTIR----   73 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~--~~g~~~~~~~-~~~~----   73 (251)
                      +.++|+++.|. +..+++|++|++.+|+-+||+|+|||||||+|++|.|-..|..-++-  ...+++..+. ..+.    
T Consensus        76 vk~~sls~s~~-g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~  154 (614)
T KOG0927|consen   76 VKIESLSLSFH-GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVM  154 (614)
T ss_pred             ceeeeeeeccC-CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhh
Confidence            46889999995 58999999999999999999999999999999999998887654443  2333332211 1111    


Q ss_pred             ------cceEEEccCCCCC-CCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHH
Q psy7367          74 ------RSLGVCPQYNALF-DKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAM  145 (251)
Q Consensus        74 ------~~i~~v~q~~~l~-~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~  145 (251)
                            .++.|...+.... +..--.+....+.+......+....++..+|..+|.. +..++.+..||||++.|++|||
T Consensus       155 ~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr  234 (614)
T KOG0927|consen  155 ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALAR  234 (614)
T ss_pred             hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHH
Confidence                  1111211111111 1100011111122222233444556677788888764 6778999999999999999999


Q ss_pred             HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCE-EEeecCHH
Q psy7367         146 AFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGK-LQCCGSSV  216 (251)
Q Consensus       146 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~-i~~~g~~~  216 (251)
                      ||..+|++|||||||++||+.++..+-+.|.++... ++|+++|+.+.+..+|..|+.+++++ +.+.|+.+
T Consensus       235 ~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnyd  305 (614)
T KOG0927|consen  235 ALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYD  305 (614)
T ss_pred             HHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeeecCCHH
Confidence            999999999999999999999999999999988655 89999999999999999999999999 56777754

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.97  E-value=5.2e-32  Score=225.32  Aligned_cols=221  Identities=20%  Similarity=0.289  Sum_probs=174.3

Q ss_pred             CEEEeEEEEeCC---CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC----CeeEEEEcceeCCC-ChHH-
Q psy7367           1 MAIQNLSKRFPN---GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV----SSGTAKIYNHDIRT-DMTT-   71 (251)
Q Consensus         1 l~i~~l~~~y~~---~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p----~~G~i~~~g~~~~~-~~~~-   71 (251)
                      +.++|++..+..   ...+++++|+++.+||+-|++|.+|||||-..|.|+|..+-    +.-..++++.++-. ..++ 
T Consensus         4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~R   83 (330)
T COG4170           4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRER   83 (330)
T ss_pred             ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHh
Confidence            357888888832   24699999999999999999999999999999999999763    35566777766532 2222 


Q ss_pred             ---hhcceEEEccCCC--CCCCCCHHHHHHHH---HHhcCCCh---HHHHHHHHHHHHHcCCCccc---CCCCCcCChhH
Q psy7367          72 ---IRRSLGVCPQYNA--LFDKLTVEEHMWFY---SQLKQVPK---DLAQLEISNMIVDLGIPHKR---TSLANTLSGGM  137 (251)
Q Consensus        72 ---~~~~i~~v~q~~~--l~~~ltv~e~l~~~---~~~~~~~~---~~~~~~~~~~l~~~~l~~~~---~~~~~~LSgG~  137 (251)
                         +.+.|+++||+|.  |.|.-+|-..+.-.   ..+.+..+   ...++++-++|.++|+.+..   ..+|.+|.-||
T Consensus        84 Rk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE  163 (330)
T COG4170          84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGE  163 (330)
T ss_pred             hhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCc
Confidence               2367899999984  44443443322111   01111111   12345788999999997654   57899999999


Q ss_pred             HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCH
Q psy7367         138 QRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  215 (251)
Q Consensus       138 kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~  215 (251)
                      -|+|+||.|++.+|++||.||||+++|+..+.+++.+|..+.  +|.||+++|||+..+.+.||++-||..|+-++.++.
T Consensus       164 ~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~  243 (330)
T COG4170         164 CQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPS  243 (330)
T ss_pred             ceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccch
Confidence            999999999999999999999999999999999999999985  489999999999999999999999999999998887


Q ss_pred             HHHHhh
Q psy7367         216 VFLKNS  221 (251)
Q Consensus       216 ~~~~~~  221 (251)
                      +.+.+.
T Consensus       244 e~l~~~  249 (330)
T COG4170         244 EELVTM  249 (330)
T ss_pred             hHHhcC
Confidence            766443

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.97  E-value=5.7e-31  Score=239.07  Aligned_cols=182  Identities=21%  Similarity=0.339  Sum_probs=148.9

Q ss_pred             eEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCC
Q psy7367           5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNA   84 (251)
Q Consensus         5 ~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~   84 (251)
                      +++|.|++  ..|+-=.=+|..||+++++||||-||||+.|+|+|.++|++|.    ..         .-+|+|-||.-.
T Consensus       347 ~~~k~~g~--F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~---------~~~vSyKPQyI~  411 (591)
T COG1245         347 DLKKTYGD--FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EE---------DLKVSYKPQYIS  411 (591)
T ss_pred             hheeecCc--eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cc---------cceEeecceeec
Confidence            44555532  2344444456678899999999999999999999999999997    11         135899999765


Q ss_pred             CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q psy7367          85 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD  164 (251)
Q Consensus        85 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD  164 (251)
                      --.+.||.+.+.-...-. .....   -..++++-++|++.+++++.+|||||.|||+||.||..++++++||||++.||
T Consensus       412 ~~~~gtV~~~l~~~~~~~-~~~s~---~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LD  487 (591)
T COG1245         412 PDYDGTVEDLLRSAIRSA-FGSSY---FKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLD  487 (591)
T ss_pred             CCCCCcHHHHHHHhhhhh-cccch---hHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhcc
Confidence            445679999886644321 11111   13467889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEee
Q psy7367         165 PYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIA  205 (251)
Q Consensus       165 ~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~  205 (251)
                      .+.|..+-+.|++..  +++|.+++.||+-.+.-++||+++++
T Consensus       488 vEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~  530 (591)
T COG1245         488 VEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE  530 (591)
T ss_pred             HHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence            999999999999974  48999999999999999999999986

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.97  E-value=8.4e-30  Score=254.02  Aligned_cols=124  Identities=27%  Similarity=0.427  Sum_probs=106.2

Q ss_pred             CCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHcc---CCCEEEEeCCCCCC
Q psy7367          88 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIG---GSRTVILDEPTSGV  163 (251)
Q Consensus        88 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~---~p~llllDEPt~gL  163 (251)
                      +|||.|.+.|+..+...      .+..++++.+||.. .+++++.+|||||+||++||++|+.   +|+++||||||+||
T Consensus       789 ~~tv~e~~~f~~~~~~i------~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgL  862 (924)
T TIGR00630       789 DMTVEEAYEFFEAVPSI------SRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGL  862 (924)
T ss_pred             CCcHHHHHHHHHhccch------hHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCC
Confidence            35667777776544321      13457899999986 4789999999999999999999997   59999999999999


Q ss_pred             CHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe------eCCEEEeecCHHHH
Q psy7367         164 DPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVFL  218 (251)
Q Consensus       164 D~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l------~~G~i~~~g~~~~~  218 (251)
                      |+..+..++++|.++. +|.|||++||+++.+. .||++++|      ++|++++.|+++++
T Consensus       863 D~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv~~G~~~~l  923 (924)
T TIGR00630       863 HFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK-TADYIIDLGPEGGDGGGTIVASGTPEEV  923 (924)
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence            9999999999999985 5999999999999985 69999999      79999999998654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.97  E-value=2e-30  Score=245.63  Aligned_cols=188  Identities=26%  Similarity=0.360  Sum_probs=159.2

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|++..-+.++..+++.||+|++||.+-|.||||||||||+|+|+|+-+.-+|+|.+-.          -..+-|+|
T Consensus       393 i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~----------~~~~lflp  462 (604)
T COG4178         393 ITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA----------DSALLFLP  462 (604)
T ss_pred             eEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC----------CCceEEec
Confidence            57899999987778899999999999999999999999999999999999999899886531          13478999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCC------CCcCChhHHHHHHHHHHHccCCCEE
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSL------ANTLSGGMQRKLSVAMAFIGGSRTV  154 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~LSgG~kqrv~ia~al~~~p~ll  154 (251)
                      |.|.+... |.+|-+.++......+.    +.+.++|.++||.++.++.      -..||+|||||+++||.|+++|+++
T Consensus       463 Q~PY~p~G-tLre~l~YP~~~~~~~d----~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v  537 (604)
T COG4178         463 QRPYLPQG-TLREALCYPNAAPDFSD----AELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWV  537 (604)
T ss_pred             CCCCCCCc-cHHHHHhCCCCCCCCCh----HHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEE
Confidence            99998777 99999998765432332    4577889999987654431      2489999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEe
Q psy7367         155 ILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAII  204 (251)
Q Consensus       155 llDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l  204 (251)
                      +|||-|++||+.+...+++++++.-.+.|||-|+|....-. +.++.+-+
T Consensus       538 ~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~-~h~~~l~l  586 (604)
T COG4178         538 FLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWN-FHSRQLEL  586 (604)
T ss_pred             EEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHH-HHhhheee
Confidence            99999999999999999999998777899999999976654 44554443

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.97  E-value=1e-30  Score=220.15  Aligned_cols=171  Identities=19%  Similarity=0.189  Sum_probs=129.4

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeC---CCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367          16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI---RTDMTTIRRSLGVCPQYNALFDKLTVE   92 (251)
Q Consensus        16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~---~~~~~~~~~~i~~v~q~~~l~~~ltv~   92 (251)
                      .++++++++.+| +.+|+||||||||||+.+|......... ....|..+   ... ......|.+.||+..++++    
T Consensus        11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~-~~~~~~i~~~~~~~~~~~~----   83 (198)
T cd03276          11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKD-GESSAKITVTLKNQGLDAN----   83 (198)
T ss_pred             ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhC-CCCeEEEEEEEEcCCccCC----
Confidence            457888999888 8899999999999999999854332221 11123211   111 1113568889998776651    


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHH
Q psy7367          93 EHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF----IGGSRTVILDEPTSGVDPYSR  168 (251)
Q Consensus        93 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al----~~~p~llllDEPt~gLD~~~~  168 (251)
                                .. ......+++++++.   .+..++++.+||+|||||++||+|+    +.+|+++||||||++||+..+
T Consensus        84 ----------~~-~~~~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~  149 (198)
T cd03276          84 ----------PL-CVLSQDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNR  149 (198)
T ss_pred             ----------cC-CHHHHHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHH
Confidence                      11 11113456677776   6677889999999999999999999    589999999999999999999


Q ss_pred             HHHHHHHHhhh-C---CCeEEEEeCCHHHHHhhcCEEEEeeCCE
Q psy7367         169 RSIWELLIKYK-K---GRTVILTTHYMDEADLLGDRIAIIAAGK  208 (251)
Q Consensus       169 ~~l~~~l~~l~-~---g~tiii~tHd~~~~~~~~d~i~~l~~G~  208 (251)
                      ..+.++|.++. +   +.||+++||+++++..+ |+|.+|..++
T Consensus       150 ~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~~~  192 (198)
T cd03276         150 KISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRMKD  192 (198)
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeEEEecC
Confidence            99999998863 3   36899999999999885 9999998754

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.97  E-value=1.5e-30  Score=226.18  Aligned_cols=193  Identities=15%  Similarity=0.132  Sum_probs=129.3

Q ss_pred             EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEccee-C-CCC------hHHhh
Q psy7367           2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD-I-RTD------MTTIR   73 (251)
Q Consensus         2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~-~-~~~------~~~~~   73 (251)
                      +++|. +.|.+ ..     +|.+.++ +++|+|||||||||||.+|++++.++.|+++..+.+ + ...      .....
T Consensus         5 ~l~nf-~~~~~-~~-----~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~   76 (247)
T cd03275           5 ELENF-KSYKG-RH-----VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAY   76 (247)
T ss_pred             EEECc-cccCC-Ce-----eecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEE
Confidence            45665 45632 22     2333444 999999999999999999999998888887654321 1 110      01122


Q ss_pred             cceEEEccCCCC-CCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcc----------------------cCCCC
Q psy7367          74 RSLGVCPQYNAL-FDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK----------------------RTSLA  130 (251)
Q Consensus        74 ~~i~~v~q~~~l-~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------------------~~~~~  130 (251)
                      -.+.|..|++.. ....++.+.... ..+.+  .....+.++++++.+++...                      .++++
T Consensus        77 v~~~f~~~~~~~~~~~~~~~~~~~~-~~ing--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~  153 (247)
T cd03275          77 VTAVYEDDDGEEKTFRRIITGGSSS-YRING--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDM  153 (247)
T ss_pred             EEEEEEcCCCcEEEEEEEEECCceE-EEECC--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhH
Confidence            234444443321 111122121110 01111  11123456678888888421                      12345


Q ss_pred             CcCChhHHHHHHHHHHHccC----CCEEEEeCCCCCCCHHHHHHHHHHHHhhhC-CCeEEEEeCCHHHHHhhcCEEEEee
Q psy7367         131 NTLSGGMQRKLSVAMAFIGG----SRTVILDEPTSGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIA  205 (251)
Q Consensus       131 ~~LSgG~kqrv~ia~al~~~----p~llllDEPt~gLD~~~~~~l~~~l~~l~~-g~tiii~tHd~~~~~~~~d~i~~l~  205 (251)
                      .+||+|||||++||+|++.+    |+++||||||++||+..+..+.+.|.++++ |.+||++||+.+.+ .+||++++|.
T Consensus       154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~d~i~~~~  232 (247)
T cd03275         154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKADALVGVY  232 (247)
T ss_pred             HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhCCeEEEEE
Confidence            99999999999999999864    999999999999999999999999999864 89999999997765 6799998886


Q ss_pred             C
Q psy7367         206 A  206 (251)
Q Consensus       206 ~  206 (251)
                      .
T Consensus       233 ~  233 (247)
T cd03275         233 R  233 (247)
T ss_pred             e
Confidence            3

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0062|consensus

Probab=99.97  E-value=1.2e-30  Score=239.81  Aligned_cols=197  Identities=20%  Similarity=0.283  Sum_probs=149.0

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |.+.+++..|| ++.+|++-++++..|.-|||+|+||+|||||||+|+.      |+|.....+     .+.+-  -+++
T Consensus        81 i~~~~fdLa~G-~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve-----qE~~g--~~t~  146 (582)
T KOG0062|consen   81 IHIDNFDLAYG-GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE-----QEVRG--DDTE  146 (582)
T ss_pred             eeeeeeeeeec-chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch-----hheec--cchH
Confidence            45678999997 5889999999999999999999999999999999997      555443321     11110  1221


Q ss_pred             c-CCCCCCCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367          81 Q-YNALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD  157 (251)
Q Consensus        81 q-~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD  157 (251)
                      - ...+..++++.+.+.--..+. +.   ...+...++|.-+|.++ ...++..+||||-|.|++|||||..+|++||||
T Consensus       147 ~~~~~l~~D~~~~dfl~~e~~l~~~~---~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLD  223 (582)
T KOG0062|consen  147 ALQSVLESDTERLDFLAEEKELLAGL---TLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLD  223 (582)
T ss_pred             HHhhhhhccHHHHHHHHhhhhhhccc---hHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeec
Confidence            1 112333444444443321111 11   11222333899999974 557889999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEE-eecCHH
Q psy7367         158 EPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ-CCGSSV  216 (251)
Q Consensus       158 EPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~-~~g~~~  216 (251)
                      |||+.||..+...+-+.|..+.  .|+|+||||-.++..+|..|+.+++-++- +.|+-+
T Consensus       224 EPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~  281 (582)
T KOG0062|consen  224 EPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYS  281 (582)
T ss_pred             CCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHH
Confidence            9999999999999999998875  89999999999999999999999988874 456543

>KOG0062|consensus

Probab=99.96  E-value=2e-29  Score=231.71  Aligned_cols=199  Identities=21%  Similarity=0.262  Sum_probs=166.9

Q ss_pred             CEEEeEEEEeCCCc-ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGK-LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~-~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v   79 (251)
                      +++.+|++.|..+. +.+.+++++++.-+-++++|+||+||||++|++.|-..|.+|.+.+.+          |.+|+|.
T Consensus       363 l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~----------r~ri~~f  432 (582)
T KOG0062|consen  363 LRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP----------RLRIKYF  432 (582)
T ss_pred             eEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc----------cceecch
Confidence            46788999996545 689999999999999999999999999999999999999999887642          5679999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE  158 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE  158 (251)
                      +|...=+-++.|.+.-.+...+.+..+    +.++..+..|||+ +...+++..||||||-||++|.+...+|.+|+|||
T Consensus       433 ~Qhhvd~l~~~v~~vd~~~~~~pG~~~----ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDE  508 (582)
T KOG0062|consen  433 AQHHVDFLDKNVNAVDFMEKSFPGKTE----EEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDE  508 (582)
T ss_pred             hHhhhhHHHHHhHHHHHHHHhCCCCCH----HHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecC
Confidence            998654444555444433333445443    4567789999998 56677789999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEe-ecCH
Q psy7367         159 PTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQC-CGSS  215 (251)
Q Consensus       159 Pt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~-~g~~  215 (251)
                      ||+.||..+...+.+.|+.+.  ..||+||||.+++..+|+.+|+.++|++.. +|..
T Consensus       509 PTNhLD~dsl~AL~~Al~~F~--GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~  564 (582)
T KOG0062|consen  509 PTNHLDRDSLGALAKALKNFN--GGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGI  564 (582)
T ss_pred             CCccccHHHHHHHHHHHHhcC--CcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccH
Confidence            999999999999998888875  459999999999999999999999999974 4444

>KOG0066|consensus

Probab=99.96  E-value=5.9e-29  Score=225.27  Aligned_cols=195  Identities=23%  Similarity=0.325  Sum_probs=161.5

Q ss_pred             EEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccC
Q psy7367           3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQY   82 (251)
Q Consensus         3 i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~   82 (251)
                      +.+|+|.|.+.++.+..++|-|.--..++|+||||.||||||++|.|-+.|+.|+.+-+          -|-+||+.-|.
T Consensus       589 lH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn----------hrL~iG~FdQh  658 (807)
T KOG0066|consen  589 LHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN----------HRLRIGWFDQH  658 (807)
T ss_pred             cccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc----------ceeeeechhhh
Confidence            57899999767899999999999999999999999999999999999999999986532          13469999887


Q ss_pred             C--CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCC-CCCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy7367          83 N--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTS-LANTLSGGMQRKLSVAMAFIGGSRTVILDEP  159 (251)
Q Consensus        83 ~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~kqrv~ia~al~~~p~llllDEP  159 (251)
                      .  .|-..-|..|++   .+..+++.+    .++..|-.|||...++. .+..||||||-||++|-.-+..|++||||||
T Consensus       659 ~~E~L~~Eetp~EyL---qr~FNlpyq----~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEP  731 (807)
T KOG0066|consen  659 ANEALNGEETPVEYL---QRKFNLPYQ----EARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEP  731 (807)
T ss_pred             hHHhhccccCHHHHH---HHhcCCChH----HHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCC
Confidence            5  344445666665   344455554    45677999999876654 7899999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEe-ecCHH
Q psy7367         160 TSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQC-CGSSV  216 (251)
Q Consensus       160 t~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~-~g~~~  216 (251)
                      |++||..+...+-+.|+++.  ..|||+|||-..+.+-.-.++|+.+..|-. +|+-+
T Consensus       732 TNNLDIESIDALaEAIney~--GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFe  787 (807)
T KOG0066|consen  732 TNNLDIESIDALAEAINEYN--GGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFE  787 (807)
T ss_pred             CCCcchhhHHHHHHHHHhcc--CcEEEEecccceeeecCceEEEEccCChhhccccHH
Confidence            99999999999999999985  459999999998888767889988876643 34433

>KOG2355|consensus

Probab=99.95  E-value=4.4e-27  Score=195.08  Aligned_cols=202  Identities=21%  Similarity=0.324  Sum_probs=161.3

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh-----------
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM-----------   69 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~-----------   69 (251)
                      +++.++.|+|+...+++-|+|++++.|.-..++|.||||||||||+|+|---.-.|.|.+.|++.-...           
T Consensus        14 ievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YL   93 (291)
T KOG2355|consen   14 IEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYL   93 (291)
T ss_pred             EEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEe
Confidence            578999999976678999999999999999999999999999999999976666699999998752210           


Q ss_pred             -HHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          70 -TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        70 -~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                       .++.+.+++-- +-.+..++++.+.| |+.  .+...    ++-+++++.++++-..  +.+.+|-|||+||.|++.|+
T Consensus        94 GgeW~~~~~~ag-evplq~D~sae~mi-fgV--~g~dp----~Rre~LI~iLDIdl~W--RmHkvSDGqrRRVQicMGLL  163 (291)
T KOG2355|consen   94 GGEWSKTVGIAG-EVPLQGDISAEHMI-FGV--GGDDP----ERREKLIDILDIDLRW--RMHKVSDGQRRRVQICMGLL  163 (291)
T ss_pred             cccccccccccc-cccccccccHHHHH-hhc--cCCCh----hHhhhhhhheeccceE--EEeeccccchhhhHHHHhcc
Confidence             01222222222 23344467775554 432  22222    2345677788776433  57899999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEee
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  212 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~  212 (251)
                      +.=++|||||-|-.||..++..+++.+++-.  +|+||++.||-.+-++....+++.|++|+++..
T Consensus       164 ~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~  229 (291)
T KOG2355|consen  164 KPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDN  229 (291)
T ss_pred             cceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeec
Confidence            9999999999999999999999999999863  599999999999999999999999999999863

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.95  E-value=1.8e-27  Score=200.53  Aligned_cols=145  Identities=25%  Similarity=0.282  Sum_probs=111.8

Q ss_pred             eeeeeEEEeCCc-EEEEEcCCCCcHHHHHHHHh--------CCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCC
Q psy7367          17 VNGLNVNFYEDQ-ITSFLGHNGAGKTTTISMLM--------GMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD   87 (251)
Q Consensus        17 l~~isl~i~~Ge-~~~liG~NGaGKSTLlk~l~--------Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~   87 (251)
                      +-++||++.+|+ +++|+||||||||||||+|+        |...|....                ..++|+.|..    
T Consensus        17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~----------------~~~~~~~~~~----   76 (200)
T cd03280          17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEG----------------SSLPVFENIF----   76 (200)
T ss_pred             eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccc----------------ccCcCccEEE----
Confidence            457899999995 89999999999999999998        544442110                0122322221    


Q ss_pred             CCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q psy7367          88 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS  167 (251)
Q Consensus        88 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~  167 (251)
                                                    ..++..+..+...+.+|+||+|++.++++ +.+|+++|+|||++|+|+..
T Consensus        77 ------------------------------~~lg~~~~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~  125 (200)
T cd03280          77 ------------------------------ADIGDEQSIEQSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVE  125 (200)
T ss_pred             ------------------------------EecCchhhhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHH
Confidence                                          11222233455678999999999999988 48999999999999999999


Q ss_pred             HHHHHH-HHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367         168 RRSIWE-LLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  213 (251)
Q Consensus       168 ~~~l~~-~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g  213 (251)
                      +..++. +++++. .+.++|++||+. ++..+||+++.|++|++..++
T Consensus       126 ~~~i~~~~l~~l~~~~~~vi~~tH~~-~l~~~~d~~~~l~~g~l~~~~  172 (200)
T cd03280         126 GAALAIAILEELLERGALVIATTHYG-ELKAYAYKREGVENASMEFDP  172 (200)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEECCHH-HHHHHHhcCCCeEEEEEEEec
Confidence            999974 677775 489999999984 566899999999999998763

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.94  E-value=5.9e-27  Score=213.04  Aligned_cols=190  Identities=21%  Similarity=0.303  Sum_probs=142.1

Q ss_pred             eEEEEeCCCcceeeeeeE-EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEE-----------EcceeCCCChHHh
Q psy7367           5 NLSKRFPNGKLAVNGLNV-NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK-----------IYNHDIRTDMTTI   72 (251)
Q Consensus         5 ~l~~~y~~~~~il~~isl-~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~-----------~~g~~~~~~~~~~   72 (251)
                      ++..+|+.+-  ++=-.| ...+|.++||+||||-||||-+|+|+|.++|.=|+..           |.|..+..-...+
T Consensus        79 e~vHRYg~Ng--FkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l  156 (591)
T COG1245          79 EVVHRYGVNG--FKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKL  156 (591)
T ss_pred             cceeeccCCc--eEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHH
Confidence            4678886432  333344 3468999999999999999999999999999877531           1111111000011


Q ss_pred             h---cceEEEccCC----CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHH
Q psy7367          73 R---RSLGVCPQYN----ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAM  145 (251)
Q Consensus        73 ~---~~i~~v~q~~----~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~  145 (251)
                      .   -++..-||.-    ..+.. +|.|.+.-.         +.+...+++.++++|...+++.+.+|||||.||++||.
T Consensus       157 ~~g~~r~v~K~QYVd~iPk~~KG-~v~elLk~~---------de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa  226 (591)
T COG1245         157 YEGELRAVHKPQYVDLIPKVVKG-KVGELLKKV---------DERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAA  226 (591)
T ss_pred             HcCCcceecchHHHHHHHHHhcc-hHHHHHHhh---------hhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHH
Confidence            1   1233334432    22222 455544321         11235788999999999999999999999999999999


Q ss_pred             HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhC-CCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367         146 AFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAA  206 (251)
Q Consensus       146 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-g~tiii~tHd~~~~~~~~d~i~~l~~  206 (251)
                      |++++++++++|||||.||...|-...+.++++.+ +++||++.||+..+.-++|.|.++..
T Consensus       227 ~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG  288 (591)
T COG1245         227 ALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG  288 (591)
T ss_pred             HHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEec
Confidence            99999999999999999999999999999999975 89999999999999999999998863

>KOG0060|consensus

Probab=99.94  E-value=8e-26  Score=210.42  Aligned_cols=195  Identities=21%  Similarity=0.259  Sum_probs=154.7

Q ss_pred             CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v   79 (251)
                      +++++++..-++ +..+++|+||+|+.|+-+-|.||||||||+|||+++|+-+-.+|++..-.+.-       -+.+-|+
T Consensus       434 i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~-------~~~lffl  506 (659)
T KOG0060|consen  434 IEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG-------PKDLFFL  506 (659)
T ss_pred             EEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC-------CCceEEe
Confidence            468889888765 56688999999999999999999999999999999999988999997643221       1458999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHh-cCCChHHHHHHHHHHHHHcCCCcccCC-----------CCCcCChhHHHHHHHHHHH
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQL-KQVPKDLAQLEISNMIVDLGIPHKRTS-----------LANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~kqrv~ia~al  147 (251)
                      ||.|.+... |.+|.+.|+..- ....+....+++...|+.++|.+...+           =...||+||+||+++||.+
T Consensus       507 PQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLf  585 (659)
T KOG0060|consen  507 PQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLF  585 (659)
T ss_pred             cCCCCcccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHH
Confidence            999998776 999999987431 111111112345556666655443221           1358999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAA  206 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~  206 (251)
                      .++|++-||||-||++|......+++.+++.  |.|.|-|+|.-..- ++-|.++-|+.
T Consensus       586 y~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~-kfHd~~L~~~g  641 (659)
T KOG0060|consen  586 YHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLW-KFHDYVLRMDG  641 (659)
T ss_pred             hcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHH-hhhhEEEEecC
Confidence            9999999999999999999999999888776  79999999997765 46788888875

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.94  E-value=8.7e-26  Score=192.26  Aligned_cols=179  Identities=15%  Similarity=0.200  Sum_probs=112.2

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEccee----CCCChHHhhcceEEEccCCC---CCCC
Q psy7367          16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD----IRTDMTTIRRSLGVCPQYNA---LFDK   88 (251)
Q Consensus        16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~----~~~~~~~~~~~i~~v~q~~~---l~~~   88 (251)
                      .++++.+++.+| +.+|+|||||||||||.+|.-.+-...... .....    +....  -...|-..++...   -+.+
T Consensus        13 ~~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~~~~~~~i~~g~--~~~~v~~~~~~~~~~~~~~n   88 (213)
T cd03277          13 TYDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRAKKVGEFVKRGC--DEGTIEIELYGNPGNIQVDN   88 (213)
T ss_pred             CcceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-ccccCHHHHhhCCC--CcEEEEEEEEeCCCccccCC
Confidence            357778887776 889999999999999999877653221100 00000    00000  0011222222110   0000


Q ss_pred             C---CHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC-CcccCCCCCcCChhHHHHHHHHHHH----ccCCCEEEEeCCC
Q psy7367          89 L---TVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI-PHKRTSLANTLSGGMQRKLSVAMAF----IGGSRTVILDEPT  160 (251)
Q Consensus        89 l---tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgG~kqrv~ia~al----~~~p~llllDEPt  160 (251)
                      +   ...+.+.-...+   ..       .+++..+.- .+..+..+.+||+||||++.+|+++    +.+|+++|+||||
T Consensus        89 ~~~~~~q~~~~~~~~~---~~-------~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~  158 (213)
T cd03277          89 LCQFLPQDRVGEFAKL---SP-------IELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEIN  158 (213)
T ss_pred             ceEEEchHHHHHHHhC---Ch-------HhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEeccc
Confidence            0   011111111111   11       122222321 2345668899999999998877554    5899999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-C-C-CeEEEEeCCHHHHHhhcC--EEEEeeCCE
Q psy7367         161 SGVDPYSRRSIWELLIKYK-K-G-RTVILTTHYMDEADLLGD--RIAIIAAGK  208 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~-g-~tiii~tHd~~~~~~~~d--~i~~l~~G~  208 (251)
                      ++||+..+..+++.+.++. + | .++|++||++..+..+||  ++++|.+|+
T Consensus       159 ~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~  211 (213)
T cd03277         159 QGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP  211 (213)
T ss_pred             ccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence            9999999999999999884 4 5 589999999988888887  788888886

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0065|consensus

Probab=99.93  E-value=6.7e-26  Score=226.76  Aligned_cols=207  Identities=23%  Similarity=0.304  Sum_probs=176.2

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC---CeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCC
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV---SSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLT   90 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~lt   90 (251)
                      ..+|+|+|.-+++|+.+.++||.||||||||++++|-+.-   ..|+|.++|.+......  ++.++|++|+...++.||
T Consensus       128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~--~~~~aY~~e~DvH~p~lT  205 (1391)
T KOG0065|consen  128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP--KKTVAYNSEQDVHFPELT  205 (1391)
T ss_pred             ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc--CceEEeccccccccceeE
Confidence            4699999999999999999999999999999999997642   35699999998854333  678999999999999999


Q ss_pred             HHHHHHHHHHhcCC-------ChHHHH-HHHHHHHHHcCCCcccCCCC-----CcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367          91 VEEHMWFYSQLKQV-------PKDLAQ-LEISNMIVDLGIPHKRTSLA-----NTLSGGMQRKLSVAMAFIGGSRTVILD  157 (251)
Q Consensus        91 v~e~l~~~~~~~~~-------~~~~~~-~~~~~~l~~~~l~~~~~~~~-----~~LSgG~kqrv~ia~al~~~p~llllD  157 (251)
                      |+|.+.|.++..+.       .+.+.. ...+.+++.+||++.++..+     .-.|||||+||++|-+++.+|+++++|
T Consensus       206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D  285 (1391)
T KOG0065|consen  206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD  285 (1391)
T ss_pred             EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence            99999998876532       222211 14678999999998877655     579999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhhC--CCeEEEEeCCH-HHHHhhcCEEEEeeCCEEEeecCHHHHHhhh
Q psy7367         158 EPTSGVDPYSRRSIWELLIKYKK--GRTVILTTHYM-DEADLLGDRIAIIAAGKLQCCGSSVFLKNSF  222 (251)
Q Consensus       158 EPt~gLD~~~~~~l~~~l~~l~~--g~tiii~tHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~  222 (251)
                      |+|.|||..+.-++++.|+++..  +.|++++-|.. +++..+.|.|++|.+|+++..|+.++....+
T Consensus       286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yF  353 (1391)
T KOG0065|consen  286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYF  353 (1391)
T ss_pred             cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHH
Confidence            99999999999999999999853  77777777754 6777889999999999999999987765544

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.92  E-value=2.5e-25  Score=187.51  Aligned_cols=146  Identities=17%  Similarity=0.139  Sum_probs=110.1

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHH
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEE   93 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e   93 (251)
                      +.+++|++|+.  |++++|+||||||||||+|+|+|...     +...|.++..        -.+++|...+|+.+|+.|
T Consensus        14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a--------~~~~~q~~~l~~~~~~~d   78 (199)
T cd03283          14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA--------SSFELPPVKIFTSIRVSD   78 (199)
T ss_pred             CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec--------CccCcccceEEEeccchh
Confidence            45667776665  79999999999999999999988553     2234544421        136677677899999999


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH-
Q psy7367          94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW-  172 (251)
Q Consensus        94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~-  172 (251)
                      |+.+.....   ..+. +++.++++.+++                          .+|+++|+||||+|+|+..+..+. 
T Consensus        79 ~l~~~~s~~---~~e~-~~~~~iL~~~~~--------------------------~~p~llllDEp~~glD~~~~~~l~~  128 (199)
T cd03283          79 DLRDGISYF---YAEL-RRLKEIVEKAKK--------------------------GEPVLFLLDEIFKGTNSRERQAASA  128 (199)
T ss_pred             ccccccChH---HHHH-HHHHHHHHhccC--------------------------CCCeEEEEecccCCCCHHHHHHHHH
Confidence            998754321   2222 467888888873                          799999999999999999998775 


Q ss_pred             HHHHhhh-CCCeEEEEeCCHHHHHhh--cCEEEEe
Q psy7367         173 ELLIKYK-KGRTVILTTHYMDEADLL--GDRIAII  204 (251)
Q Consensus       173 ~~l~~l~-~g~tiii~tHd~~~~~~~--~d~i~~l  204 (251)
                      .++..+. .+.++|++||+++++..+  .+++-.+
T Consensus       129 ~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~  163 (199)
T cd03283         129 AVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNY  163 (199)
T ss_pred             HHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence            4677774 589999999999998876  4455444

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.92  E-value=3.5e-25  Score=189.65  Aligned_cols=153  Identities=18%  Similarity=0.201  Sum_probs=117.6

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceE-EEccCCCCCCCCCH
Q psy7367          13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLG-VCPQYNALFDKLTV   91 (251)
Q Consensus        13 ~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~-~v~q~~~l~~~ltv   91 (251)
                      .+.+.+|+++++.++++++|+||||+|||||+++++-                    ..+..++| |+|.+...++    
T Consensus        16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~--------------------~~~la~~g~~vpa~~~~~~----   71 (222)
T cd03285          16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV--------------------IVLMAQIGCFVPCDSADIP----   71 (222)
T ss_pred             CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH--------------------HHHHHHhCCCcCcccEEEe----
Confidence            3578999999999999999999999999999999991                    01223445 5555443222    


Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHH--ccCCCEEEEeCC---CCCCCHH
Q psy7367          92 EEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF--IGGSRTVILDEP---TSGVDPY  166 (251)
Q Consensus        92 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al--~~~p~llllDEP---t~gLD~~  166 (251)
                                          .+++++..+++.+..   ...+|.|++|++.+++++  +.+|+++|||||   |+++|+.
T Consensus        72 --------------------~~~~il~~~~l~d~~---~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~  128 (222)
T cd03285          72 --------------------IVDCILARVGASDSQ---LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGF  128 (222)
T ss_pred             --------------------ccceeEeeeccccch---hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHH
Confidence                                122345556665443   578999999999999999  899999999999   9999999


Q ss_pred             HHHHHH-HHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367         167 SRRSIW-ELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  214 (251)
Q Consensus       167 ~~~~l~-~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~  214 (251)
                      +..... +.+.+ ..+.++|++||+ .++.++||++..+++|++....+
T Consensus       129 ~~~~~il~~l~~-~~~~~vlisTH~-~el~~~~~~~~~i~~g~~~~~~~  175 (222)
T cd03285         129 GLAWAIAEYIAT-QIKCFCLFATHF-HELTALADEVPNVKNLHVTALTD  175 (222)
T ss_pred             HHHHHHHHHHHh-cCCCeEEEEech-HHHHHHhhcCCCeEEEEEEEEEe
Confidence            886443 33332 247999999996 77788999999999999987654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.92  E-value=2.8e-24  Score=189.74  Aligned_cols=76  Identities=22%  Similarity=0.284  Sum_probs=69.5

Q ss_pred             cCChhHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCC
Q psy7367         132 TLSGGMQRKLSVAMAFIG----GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAG  207 (251)
Q Consensus       132 ~LSgG~kqrv~ia~al~~----~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G  207 (251)
                      .|||||+||+++|++++.    +|+++|+||||++||+..+..+.+.+.++.++.|+|++||++..+ .+||++++|.++
T Consensus       170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~-~~~d~~~~l~~~  248 (276)
T cd03241         170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVA-AMADNHFLVEKE  248 (276)
T ss_pred             hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHH-HhcCcEEEEEEe
Confidence            499999999999997654    999999999999999999999999999987789999999999865 689999999887


Q ss_pred             E
Q psy7367         208 K  208 (251)
Q Consensus       208 ~  208 (251)
                      .
T Consensus       249 ~  249 (276)
T cd03241         249 V  249 (276)
T ss_pred             c
Confidence            4

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.91  E-value=5.3e-24  Score=176.49  Aligned_cols=73  Identities=23%  Similarity=0.327  Sum_probs=67.7

Q ss_pred             CChhHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367         133 LSGGMQRKLSVAMAFI----GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAA  206 (251)
Q Consensus       133 LSgG~kqrv~ia~al~----~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~  206 (251)
                      ||+||+||++||++++    .+|+++|+|||+++||+..+..+.+.+.++. +|.++|++||+++.+. .||+++.+..
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~-~adrvi~i~~  172 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE-NADKLIGVLF  172 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCeEEEEEE
Confidence            9999999999999996    6999999999999999999999999999985 4799999999998875 7999999875

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.91  E-value=4.3e-24  Score=174.31  Aligned_cols=138  Identities=27%  Similarity=0.366  Sum_probs=103.0

Q ss_pred             eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceE-EEccCCCCCCCCCHHHHHH
Q psy7367          18 NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLG-VCPQYNALFDKLTVEEHMW   96 (251)
Q Consensus        18 ~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~-~v~q~~~l~~~ltv~e~l~   96 (251)
                      ...++.+.++.+..|+|||||||||+++++....-..+|.+... .+.         +.+ ++++....+        + 
T Consensus        12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~-~~~---------~~g~~~~~~~~~~--------i-   72 (162)
T cd03227          12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRR-SGV---------KAGCIVAAVSAEL--------I-   72 (162)
T ss_pred             eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc-Ccc---------cCCCcceeeEEEE--------e-
Confidence            44456666667999999999999999999887765555544431 111         011 111111111        0 


Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHH
Q psy7367          97 FYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIG----GSRTVILDEPTSGVDPYSRRSIW  172 (251)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~----~p~llllDEPt~gLD~~~~~~l~  172 (251)
                      +                               ...+||+||+||+++|++|+.    +|+++|+|||++|+|+..+..+.
T Consensus        73 ~-------------------------------~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~  121 (162)
T cd03227          73 F-------------------------------TRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALA  121 (162)
T ss_pred             h-------------------------------heeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence            0                               001199999999999999987    78999999999999999999999


Q ss_pred             HHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367         173 ELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAA  206 (251)
Q Consensus       173 ~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~  206 (251)
                      +.+.++. ++.++|++||+.+.+. .+|+++.|..
T Consensus       122 ~~l~~~~~~~~~vii~TH~~~~~~-~~d~~~~l~~  155 (162)
T cd03227         122 EAILEHLVKGAQVIVITHLPELAE-LADKLIHIKK  155 (162)
T ss_pred             HHHHHHHhcCCEEEEEcCCHHHHH-hhhhEEEEEE
Confidence            9998873 4899999999999986 5899999864

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>KOG0066|consensus

Probab=99.90  E-value=1.3e-24  Score=197.26  Aligned_cols=212  Identities=20%  Similarity=0.272  Sum_probs=161.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhC--CCCCCeeEEEEcceeCCC-ChH-------
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMG--MLPVSSGTAKIYNHDIRT-DMT-------   70 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~G--l~~p~~G~i~~~g~~~~~-~~~-------   70 (251)
                      |.++|++.+-. ++..+.+.||.|-.|..|||+||||-||||||+-|+.  +--|..=.|.+..+.+.. ...       
T Consensus       265 IKiEnF~ISA~-Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~  343 (807)
T KOG0066|consen  265 IKIENFDISAQ-GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLK  343 (807)
T ss_pred             ceeeeeeeecc-cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHH
Confidence            56888888874 5789999999999999999999999999999999986  333445567777766521 111       


Q ss_pred             HhhcceEEEccCCCC-----CCCCCHHHHHHH-HHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHH
Q psy7367          71 TIRRSLGVCPQYNAL-----FDKLTVEEHMWF-YSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSV  143 (251)
Q Consensus        71 ~~~~~i~~v~q~~~l-----~~~ltv~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~i  143 (251)
                      .-.++..++-.+..|     -...|+.|-+.- +..++......++.+++.+|.-+|++ +..+++...+|||-|.||++
T Consensus       344 aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSL  423 (807)
T KOG0066|consen  344 ADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSL  423 (807)
T ss_pred             hhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhH
Confidence            001223333222111     234577776643 23344333444456788899999997 45678889999999999999


Q ss_pred             HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEe-ecCH
Q psy7367         144 AMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQC-CGSS  215 (251)
Q Consensus       144 a~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~-~g~~  215 (251)
                      ||||..+|-+|+|||||+.||..+...+-+.|..++  +|++|+|||..++..+|..|+.|++.++.+ .|..
T Consensus       424 ARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk--KTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY  494 (807)
T KOG0066|consen  424 ARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNY  494 (807)
T ss_pred             HHHHhcCceeeeecCCccccccceeeehhhHHhhhh--heeEEEecccchHHHHHHHHhhhhhhhhhhhcchH
Confidence            999999999999999999999999998888887775  799999999999999999999999998853 4553

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.90  E-value=4.5e-23  Score=186.10  Aligned_cols=178  Identities=20%  Similarity=0.321  Sum_probs=144.3

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCC--------CCCCeeEEEEcceeCCCChHHhhcceEEEccCC-CC
Q psy7367          15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM--------LPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYN-AL   85 (251)
Q Consensus        15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl--------~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~-~l   85 (251)
                      .+++|+||++++|++++|+|+|||||||+|++|+|.        ++|++|.|.+--..          --+++|-+. .-
T Consensus       397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt----------~~a~iPge~Ep~  466 (593)
T COG2401         397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT----------VSALIPGEYEPE  466 (593)
T ss_pred             eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc----------hhhccCcccccc
Confidence            589999999999999999999999999999999996        47899988763111          123555432 12


Q ss_pred             CCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc--ccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCC
Q psy7367          86 FDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH--KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGV  163 (251)
Q Consensus        86 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gL  163 (251)
                      |..-|+.|++.-   ..+  .   -..+.++|.+.|+.+  +..+++++||.|||.|+.||.+++..|.+++.||=.|.|
T Consensus       467 f~~~tilehl~s---~tG--D---~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhL  538 (593)
T COG2401         467 FGEVTILEHLRS---KTG--D---LNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHL  538 (593)
T ss_pred             cCchhHHHHHhh---ccC--c---hhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhc
Confidence            335566666632   111  1   123567899999975  446789999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhh-cCEEEEeeCCEEE
Q psy7367         164 DPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLL-GDRIAIIAAGKLQ  210 (251)
Q Consensus       164 D~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~-~d~i~~l~~G~i~  210 (251)
                      |+.+...+..-|.++.  .|.|++++||..+....+ -|+++.+.-|+..
T Consensus       539 D~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~  588 (593)
T COG2401         539 DELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP  588 (593)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence            9999999999999985  399999999999999999 6999998877654

>KOG0064|consensus

Probab=99.90  E-value=4.3e-24  Score=197.11  Aligned_cols=186  Identities=20%  Similarity=0.271  Sum_probs=142.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |.++|+-.--+.+..++..++|+|++|--+.|+||||||||+|+|+|.|+-|...|...+      ..    ..++-|+|
T Consensus       482 I~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~------P~----~~~mFYIP  551 (728)
T KOG0064|consen  482 IILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI------PR----PNNIFYIP  551 (728)
T ss_pred             eEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec------CC----CcceEecc
Confidence            356677666665567889999999999999999999999999999999999886666543      11    23599999


Q ss_pred             cCCCCCCCCCHHHHHHHHHH-----hcCCChHHHHHHHHHHHHHcCCCcccCCCC---------CcCChhHHHHHHHHHH
Q psy7367          81 QYNALFDKLTVEEHMWFYSQ-----LKQVPKDLAQLEISNMIVDLGIPHKRTSLA---------NTLSGGMQRKLSVAMA  146 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~-----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~kqrv~ia~a  146 (251)
                      |.|.+- .=|.+|.+.++-.     -++...+    ..+..|+.+.|++.+.+-.         ..||||||||+++||.
T Consensus       552 QRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~----dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm  626 (728)
T KOG0064|consen  552 QRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQ----DLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARM  626 (728)
T ss_pred             CCCccC-cCcccceeecCCcHHHHHhcCCCHH----HHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHH
Confidence            999865 3478888766532     1233332    3555666666655443332         4799999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEe
Q psy7367         147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAII  204 (251)
Q Consensus       147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l  204 (251)
                      +-++|++.+|||-||++.+.....+++..+..  |.+.+-+||.+..... -.+++-+
T Consensus       627 ~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~--gi~llsithrpslwk~-h~~ll~~  681 (728)
T KOG0064|consen  627 FYHRPKYALLDECTSAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKY-HTHLLEF  681 (728)
T ss_pred             HhcCcchhhhhhhhcccccchHHHHHHHHHhc--CceEEEeecCccHHHH-HHHHHhc
Confidence            99999999999999999999888888776654  8999999999877653 3444433

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.89  E-value=5.4e-23  Score=173.95  Aligned_cols=143  Identities=20%  Similarity=0.267  Sum_probs=109.6

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367          13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE   92 (251)
Q Consensus        13 ~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~   92 (251)
                      ++.+.+|++|++++|++++|+||||+||||++|+++++.                    +..++|+..  |..+..+++.
T Consensus        15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~--------------------~la~~G~~v--pa~~~~l~~~   72 (204)
T cd03282          15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA--------------------IMAQIGCFV--PAEYATLPIF   72 (204)
T ss_pred             CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH--------------------HHHHcCCCc--chhhcCccCh
Confidence            357999999999999999999999999999999999873                    122334321  4445556666


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH
Q psy7367          93 EHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW  172 (251)
Q Consensus        93 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~  172 (251)
                      |++..                     .++..+...+..+.+|.|++|+ ..+.+++.+|+++|+|||++|+|+.....+.
T Consensus        73 d~I~~---------------------~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~  130 (204)
T cd03282          73 NRLLS---------------------RLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAIS  130 (204)
T ss_pred             hheeE---------------------ecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHH
Confidence            66632                     2333444566788999999975 5666788999999999999999997766654


Q ss_pred             -HHHHhhh-CCCeEEEEeCCHHHHHhhcC
Q psy7367         173 -ELLIKYK-KGRTVILTTHYMDEADLLGD  199 (251)
Q Consensus       173 -~~l~~l~-~g~tiii~tHd~~~~~~~~d  199 (251)
                       .++..+. .+.++|++||+.+.+..+++
T Consensus       131 ~~il~~l~~~~~~~i~~TH~~~l~~~~~~  159 (204)
T cd03282         131 LAILECLIKKESTVFFATHFRDIAAILGN  159 (204)
T ss_pred             HHHHHHHHhcCCEEEEECChHHHHHHhhc
Confidence             4566664 58999999999999987664

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.89  E-value=1.9e-22  Score=201.88  Aligned_cols=129  Identities=25%  Similarity=0.403  Sum_probs=110.8

Q ss_pred             CCCCHHHHHHHHHHhcCCChH----------HHHHHHHHHHHHcCCCcc-cCCCCCcCChhHHHHHHHHHHHccCC--CE
Q psy7367          87 DKLTVEEHMWFYSQLKQVPKD----------LAQLEISNMIVDLGIPHK-RTSLANTLSGGMQRKLSVAMAFIGGS--RT  153 (251)
Q Consensus        87 ~~ltv~e~l~~~~~~~~~~~~----------~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~kqrv~ia~al~~~p--~l  153 (251)
                      ..|||.|.+.|.-.+ +....          +..++++ +|+.+||.+. +++++.+|||||+|||+||+||+.+|  ++
T Consensus       435 ~~~~v~~~~~~~~~~-~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~l  512 (943)
T PRK00349        435 SELSIGEALEFFENL-KLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVL  512 (943)
T ss_pred             hcCcHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcE
Confidence            467899988885443 22221          3344553 7888999876 79999999999999999999999997  99


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe------eCCEEEeecCHHHH
Q psy7367         154 VILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVFL  218 (251)
Q Consensus       154 lllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l------~~G~i~~~g~~~~~  218 (251)
                      +||||||+|||+..+..++++|++++ +|.|||+|+|+++++. .||++++|      ++|++++.|+++++
T Consensus       513 lILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~  583 (943)
T PRK00349        513 YVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIR-AADYIVDIGPGAGVHGGEVVASGTPEEI  583 (943)
T ss_pred             EEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEeccccCCCCCEEeeccCHHHH
Confidence            99999999999999999999999996 4999999999999986 69999999      99999999998776

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.89  E-value=4.5e-22  Score=207.30  Aligned_cols=197  Identities=17%  Similarity=0.157  Sum_probs=146.9

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh----------CCCCCCeeEEEEcceeCCCCh-----------HHhhc
Q psy7367          16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLM----------GMLPVSSGTAKIYNHDIRTDM-----------TTIRR   74 (251)
Q Consensus        16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~----------Gl~~p~~G~i~~~g~~~~~~~-----------~~~~~   74 (251)
                      =|+|++.+|+-|.+++|.|.+|||||||++-..          |... -+--|.++-.++....           +.+|+
T Consensus      1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~-~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~ 1583 (1809)
T PRK00635       1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSV-FSEIIFLDSHPQISSQRSDISTYFDIAPSLRN 1583 (1809)
T ss_pred             cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccc-cCcEEEEeCCCCCCCCCCchhhhhhhHHHHHH
Confidence            489999999999999999999999999997544          3321 2334667666653210           11111


Q ss_pred             c--------------------------------------eEEEccCC-----------------CCC--------CCCCH
Q psy7367          75 S--------------------------------------LGVCPQYN-----------------ALF--------DKLTV   91 (251)
Q Consensus        75 ~--------------------------------------i~~v~q~~-----------------~l~--------~~ltv   91 (251)
                      -                                      +.|+++-.                 .-|        -+|||
T Consensus      1584 lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv 1663 (1809)
T PRK00635       1584 FYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPI 1663 (1809)
T ss_pred             HHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCH
Confidence            1                                      11222210                 001        23566


Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHH
Q psy7367          92 EEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGG---SRTVILDEPTSGVDPYS  167 (251)
Q Consensus        92 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~---p~llllDEPt~gLD~~~  167 (251)
                      .|-+.|+...     ... .+.-+.|..+||.. .+.++..+|||||.||+-||..|..+   +.+++|||||.||++..
T Consensus      1664 ~ea~~~F~~~-----~~i-~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d 1737 (1809)
T PRK00635       1664 EEVAETFPFL-----KKI-QKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQ 1737 (1809)
T ss_pred             HHHHHHhhcc-----HHH-HHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHH
Confidence            6666665321     112 33457889999985 45899999999999999999999875   78999999999999999


Q ss_pred             HHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEee------CCEEEeecCHHHHHh
Q psy7367         168 RRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIA------AGKLQCCGSSVFLKN  220 (251)
Q Consensus       168 ~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~------~G~i~~~g~~~~~~~  220 (251)
                      .+.+++.|.++. .|.|||++.||++.+.. ||+|+-|-      .|+|++.|+|+++..
T Consensus      1738 ~~~Ll~~l~~L~~~g~tvivieH~~~~i~~-aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635       1738 KSALLVQLRTLVSLGHSVIYIDHDPALLKQ-ADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred             HHHHHHHHHHHHhcCCeEEEEeCCHHHHHh-CCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence            999999999995 69999999999999986 99999994      478999999998864

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.88  E-value=2.3e-23  Score=175.70  Aligned_cols=152  Identities=15%  Similarity=0.151  Sum_probs=104.4

Q ss_pred             eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC-CCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHH
Q psy7367          18 NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML-PVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMW   96 (251)
Q Consensus        18 ~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~   96 (251)
                      -..++++.+|++++|+||||||||||||+|++.. .+..|....          ..+..+++..|..   ..++      
T Consensus        20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~----------~~~~~i~~~dqi~---~~~~------   80 (202)
T cd03243          20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP----------AESASIPLVDRIF---TRIG------   80 (202)
T ss_pred             EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc----------ccccccCCcCEEE---EEec------
Confidence            3446777799999999999999999999999543 222221100          0012233322211   1111      


Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH-HH
Q psy7367          97 FYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE-LL  175 (251)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~-~l  175 (251)
                                               ..+......+.+|.+++| +..+.+++.+|+++|+||||+|+|+..+..+.. ++
T Consensus        81 -------------------------~~d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll  134 (202)
T cd03243          81 -------------------------AEDSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVL  134 (202)
T ss_pred             -------------------------CcccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHH
Confidence                                     111222334566766666 666678889999999999999999999988765 45


Q ss_pred             Hhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCH
Q psy7367         176 IKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  215 (251)
Q Consensus       176 ~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~  215 (251)
                      ..+. .+.++|++||+.+.+. .|+++..+.++++...++.
T Consensus       135 ~~l~~~~~~vi~~tH~~~~~~-~~~~~~~l~~~~~~~~~~~  174 (202)
T cd03243         135 EHLLEKGCRTLFATHFHELAD-LPEQVPGVKNLHMEELITT  174 (202)
T ss_pred             HHHHhcCCeEEEECChHHHHH-HhhcCCCeEEEEEEEEecC
Confidence            6564 4899999999987766 6889999999999877654

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.88  E-value=6.4e-22  Score=197.80  Aligned_cols=129  Identities=24%  Similarity=0.405  Sum_probs=107.8

Q ss_pred             CCCHHHHHHHHHHhcCCCh---------HHHHHHHHHHHHHcCCCcc-cCCCCCcCChhHHHHHHHHHHHccCC--CEEE
Q psy7367          88 KLTVEEHMWFYSQLKQVPK---------DLAQLEISNMIVDLGIPHK-RTSLANTLSGGMQRKLSVAMAFIGGS--RTVI  155 (251)
Q Consensus        88 ~ltv~e~l~~~~~~~~~~~---------~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~kqrv~ia~al~~~p--~lll  155 (251)
                      .|||.|.+.|...+.-...         .+..+++ +.+..+||... +++++.+|||||+|||.||+||+.+|  ++||
T Consensus       434 ~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llI  512 (924)
T TIGR00630       434 ELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYV  512 (924)
T ss_pred             cCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEE
Confidence            5788888887665421110         1122233 34777899766 78999999999999999999999986  8999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe------eCCEEEeecCHHHH
Q psy7367         156 LDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVFL  218 (251)
Q Consensus       156 lDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l------~~G~i~~~g~~~~~  218 (251)
                      |||||+|||+..+..++++|++++ +|.|||+|+||++++. .||++++|      ++|+|++.|+++.+
T Consensus       513 LDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~-~aD~vi~LgpgaG~~~G~Iv~~g~~~el  581 (924)
T TIGR00630       513 LDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIR-AADYVIDIGPGAGIHGGEVVASGTPEEI  581 (924)
T ss_pred             EcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCEEEEecccccCCCCEEeeccCHHHH
Confidence            999999999999999999999996 5999999999999986 89999999      99999999998776

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.88  E-value=2.7e-21  Score=186.07  Aligned_cols=126  Identities=31%  Similarity=0.456  Sum_probs=105.7

Q ss_pred             CCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccCC---CEEEEeCCCCCC
Q psy7367          88 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGGS---RTVILDEPTSGV  163 (251)
Q Consensus        88 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~p---~llllDEPt~gL  163 (251)
                      +|||.|-..|+...   +.  . .+.-+.|..+||.. .+.++..+|||||.|||-||.-|....   -++||||||.||
T Consensus       783 ~MTveEA~~FF~~~---p~--I-~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGL  856 (935)
T COG0178         783 DMTVEEALEFFEAI---PK--I-ARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGL  856 (935)
T ss_pred             hccHHHHHHHHhcc---hH--H-HHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCC
Confidence            45666666665432   11  2 23446788889984 568999999999999999999998888   999999999999


Q ss_pred             CHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe------eCCEEEeecCHHHHHh
Q psy7367         164 DPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVFLKN  220 (251)
Q Consensus       164 D~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l------~~G~i~~~g~~~~~~~  220 (251)
                      -....+++++.|.++. +|-|||++.|+++.+. .||.|+-|      ..|+|++.|+|+++..
T Consensus       857 H~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk-~AD~IIDLGPeGG~~GG~iva~GTPeeva~  919 (935)
T COG0178         857 HFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVASGTPEEVAK  919 (935)
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEecccceEe-ecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence            9999999999999995 6999999999999986 59999998      4579999999998865

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.87  E-value=2.9e-21  Score=170.00  Aligned_cols=78  Identities=24%  Similarity=0.296  Sum_probs=68.6

Q ss_pred             CCCcCChhHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhc-
Q psy7367         129 LANTLSGGMQRKLSVAMAFI---------GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLG-  198 (251)
Q Consensus       129 ~~~~LSgG~kqrv~ia~al~---------~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~-  198 (251)
                      ....+|+||||+++||++|+         .+|+++|+||||++||+..+..+++.+.++.   .+++++|+...+..+| 
T Consensus       180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~~~~~~~~~~  256 (270)
T cd03242         180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTDLADFDALWL  256 (270)
T ss_pred             HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCCchhccchhc
Confidence            34568999999999999985         7999999999999999999999999998764   4778888888888888 


Q ss_pred             --CEEEEeeCCEE
Q psy7367         199 --DRIAIIAAGKL  209 (251)
Q Consensus       199 --d~i~~l~~G~i  209 (251)
                        ++++.+++|++
T Consensus       257 ~~~~i~~l~~g~i  269 (270)
T cd03242         257 RRAQIFRVDAGTL  269 (270)
T ss_pred             cCccEEEEeCcEE
Confidence              78999999986

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0063|consensus

Probab=99.86  E-value=2.6e-21  Score=175.12  Aligned_cols=183  Identities=22%  Similarity=0.293  Sum_probs=147.6

Q ss_pred             EEeCCCcceeeeeeEEEeCCc-----EEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccC
Q psy7367           8 KRFPNGKLAVNGLNVNFYEDQ-----ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQY   82 (251)
Q Consensus         8 ~~y~~~~~il~~isl~i~~Ge-----~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~   82 (251)
                      ++|++-+.-+.+..|.|+.|+     ++..+|.||.|||||+++++|.++|++|.      ++.      .-.|+|=||.
T Consensus       343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p------~lnVSykpqk  410 (592)
T KOG0063|consen  343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIP------VLNVSYKPQK  410 (592)
T ss_pred             eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccc------ccceeccccc
Confidence            456544556788899998885     78999999999999999999999998762      111      1247888887


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCC
Q psy7367          83 NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSG  162 (251)
Q Consensus        83 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~g  162 (251)
                      ..--..-||++.+.--.+-.-...    +-+.++++-+.+++..++.+..|||||+|||++|.+|-..+++++.|||.+-
T Consensus       411 ispK~~~tvR~ll~~kIr~ay~~p----qF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAy  486 (592)
T KOG0063|consen  411 ISPKREGTVRQLLHTKIRDAYMHP----QFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAY  486 (592)
T ss_pred             cCccccchHHHHHHHHhHhhhcCH----HHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhh
Confidence            544334588887644222111111    2356778888999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhh--hCCCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367         163 VDPYSRRSIWELLIKY--KKGRTVILTTHYMDEADLLGDRIAIIAA  206 (251)
Q Consensus       163 LD~~~~~~l~~~l~~l--~~g~tiii~tHd~~~~~~~~d~i~~l~~  206 (251)
                      ||.+.+..--..++++  +.++|-.++.||+-.+..++||+++.+.
T Consensus       487 lDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G  532 (592)
T KOG0063|consen  487 LDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG  532 (592)
T ss_pred             cChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence            9999999988888885  5689999999999999999999999864

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.84  E-value=1.3e-20  Score=165.47  Aligned_cols=139  Identities=18%  Similarity=0.179  Sum_probs=103.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC--ChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT--DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP  105 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~  105 (251)
                      .-++|+||||||||||+++|+|+++|++|+|.++|+++..  ...++...++++||.. +.+.++|.+|..-        
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k--------  182 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPK--------  182 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchH--------
Confidence            5689999999999999999999999999999999999853  2345666788889865 4566777665311        


Q ss_pred             hHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEE
Q psy7367         106 KDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVI  185 (251)
Q Consensus       106 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tii  185 (251)
                             ..                     |+   .+++++  .+|+++|+|||++      .+.+..++..+..|.++|
T Consensus       183 -------~~---------------------~~---~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~~G~~vI  223 (270)
T TIGR02858       183 -------AE---------------------GM---MMLIRS--MSPDVIVVDEIGR------EEDVEALLEALHAGVSII  223 (270)
T ss_pred             -------HH---------------------HH---HHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHhCCCEEE
Confidence                   00                     00   333333  6999999999974      344555555566799999


Q ss_pred             EEeCCHHH--H-----------HhhcCEEEEeeCCEEEeecCHH
Q psy7367         186 LTTHYMDE--A-----------DLLGDRIAIIAAGKLQCCGSSV  216 (251)
Q Consensus       186 i~tHd~~~--~-----------~~~~d~i~~l~~G~i~~~g~~~  216 (251)
                      ++||+...  +           ..++||+++|++|+  ..|+++
T Consensus       224 ~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~  265 (270)
T TIGR02858       224 ATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVE  265 (270)
T ss_pred             EEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCcee
Confidence            99997655  4           36689999999876  555553

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.83  E-value=1e-20  Score=161.38  Aligned_cols=153  Identities=20%  Similarity=0.221  Sum_probs=104.7

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHH
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEE   93 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e   93 (251)
                      +.+.+|++|+..+ ++++|+||||||||||||+++++.-.  |+   .|..+    +..+..++++.|   +|+.+++.|
T Consensus        18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~v----p~~~~~i~~~~~---i~~~~~~~~   84 (216)
T cd03284          18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFV----PASKAEIGVVDR---IFTRIGASD   84 (216)
T ss_pred             ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCee----ccccceecceee---EeccCCchh
Confidence            4688999999988 99999999999999999999875422  11   11111    112345777754   567788888


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHH--HccCCCEEEEeCC---CCCCCHHHH
Q psy7367          94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMA--FIGGSRTVILDEP---TSGVDPYSR  168 (251)
Q Consensus        94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~a--l~~~p~llllDEP---t~gLD~~~~  168 (251)
                      ++..+.                                  |.=+..++.++++  .+.+|+++|||||   |+++|....
T Consensus        85 ~ls~g~----------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~  130 (216)
T cd03284          85 DLAGGR----------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI  130 (216)
T ss_pred             hhccCc----------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Confidence            875531                                  1112222333333  3679999999999   888887652


Q ss_pred             HHHHHHHHhh-hC-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHH
Q psy7367         169 RSIWELLIKY-KK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  216 (251)
Q Consensus       169 ~~l~~~l~~l-~~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~  216 (251)
                        ...++..+ +. +.++|++||+. ++..++|++..++++++...++.+
T Consensus       131 --~~~il~~l~~~~~~~vi~~TH~~-~l~~l~~~~~~v~~~~~~~~~~~~  177 (216)
T cd03284         131 --AWAIVEYLHEKIGAKTLFATHYH-ELTELEGKLPRVKNFHVAVKEKGG  177 (216)
T ss_pred             --HHHHHHHHHhccCCcEEEEeCcH-HHHHHhhcCCCeEEEEEEEEeeCC
Confidence              23344444 23 78999999997 455689998888889887765543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.77  E-value=2.6e-19  Score=149.13  Aligned_cols=90  Identities=20%  Similarity=0.243  Sum_probs=65.7

Q ss_pred             HcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH-HHHHhhh-C-CCeEEEEeCCHHHHH
Q psy7367         119 DLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW-ELLIKYK-K-GRTVILTTHYMDEAD  195 (251)
Q Consensus       119 ~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~-~~l~~l~-~-g~tiii~tHd~~~~~  195 (251)
                      .++..+..++..+++|+|++|...+++. +.+|+++|+|||++|+|+.....+. .+++.+. + +.++|++||+++ +.
T Consensus        48 ~~~~~d~~~~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~-l~  125 (185)
T smart00534       48 RIGASDSLAQGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE-LT  125 (185)
T ss_pred             EeCCCCchhccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH-HH
Confidence            3444555667788999998875444433 4599999999999999999887765 5556664 3 899999999995 56


Q ss_pred             hhcCEEEEeeCCEEE
Q psy7367         196 LLGDRIAIIAAGKLQ  210 (251)
Q Consensus       196 ~~~d~i~~l~~G~i~  210 (251)
                      ++||+.--++++.+.
T Consensus       126 ~~~~~~~~v~~~~~~  140 (185)
T smart00534      126 KLADEHPGVRNLHMS  140 (185)
T ss_pred             HHhhcCccceEEEEE
Confidence            688864444555443

>PRK00064 recF recombination protein F; Reviewed

Probab=99.77  E-value=5.4e-17  Score=148.47  Aligned_cols=79  Identities=28%  Similarity=0.356  Sum_probs=69.7

Q ss_pred             CCCcCChhHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhc-
Q psy7367         129 LANTLSGGMQRKLSVAMAFI---------GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLG-  198 (251)
Q Consensus       129 ~~~~LSgG~kqrv~ia~al~---------~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~-  198 (251)
                      ....+|.||+|++++|++|+         .+|+++|||||+++||+..+..+++.+.++  +..++++||+.+.+...+ 
T Consensus       270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~  347 (361)
T PRK00064        270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLE  347 (361)
T ss_pred             HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhc
Confidence            34689999999999999986         799999999999999999999999999765  357999999998877764 


Q ss_pred             -CEEEEeeCCEE
Q psy7367         199 -DRIAIIAAGKL  209 (251)
Q Consensus       199 -d~i~~l~~G~i  209 (251)
                       ++++.|++|++
T Consensus       348 ~~~i~~v~~G~i  359 (361)
T PRK00064        348 NAKIFHVEQGKI  359 (361)
T ss_pred             cCcEEEEeCCEE
Confidence             57999999987

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.75  E-value=1.5e-17  Score=141.66  Aligned_cols=131  Identities=15%  Similarity=0.142  Sum_probs=91.1

Q ss_pred             eEEEeCC--cEEEEEcCCCCcHHHHHHHHhC--CCCCCeeEEEEcceeCCCChHHhhcceEEEccCCC-CCCCCCHHHHH
Q psy7367          21 NVNFYED--QITSFLGHNGAGKTTTISMLMG--MLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNA-LFDKLTVEEHM   95 (251)
Q Consensus        21 sl~i~~G--e~~~liG~NGaGKSTLlk~l~G--l~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~-l~~~ltv~e~l   95 (251)
                      ++.+.++  .+++|+||||+|||||||.++.  ++ +..|......          ...++|..|... +-...++.+++
T Consensus        21 d~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~----------~~~~~~~d~i~~~l~~~~si~~~~   89 (213)
T cd03281          21 DTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD----------SATIGLVDKIFTRMSSRESVSSGQ   89 (213)
T ss_pred             eEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC----------CcEEeeeeeeeeeeCCccChhhcc
Confidence            4445554  7999999999999999999984  33 5566544321          134677777542 22222333222


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH-HHHH
Q psy7367          96 WFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS-IWEL  174 (251)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~-l~~~  174 (251)
                      .                           .+         .-+-||+++|++++.+|+++|+|||++|+|+..... +..+
T Consensus        90 S---------------------------~f---------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ai  133 (213)
T cd03281          90 S---------------------------AF---------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIAT  133 (213)
T ss_pred             c---------------------------hH---------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHH
Confidence            1                           00         224588999999999999999999999999976444 4567


Q ss_pred             HHhhh-C---CCeEEEEeCCHHHHHhhc
Q psy7367         175 LIKYK-K---GRTVILTTHYMDEADLLG  198 (251)
Q Consensus       175 l~~l~-~---g~tiii~tHd~~~~~~~~  198 (251)
                      ++++. .   +.++|++||+.+.+....
T Consensus       134 l~~l~~~~~~~~~vli~TH~~~l~~~~~  161 (213)
T cd03281         134 IEHLLKRGPECPRVIVSTHFHELFNRSL  161 (213)
T ss_pred             HHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence            77764 3   358999999999988764

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR01069 mutS2 MutS2 family protein

Probab=99.75  E-value=3.5e-18  Score=169.08  Aligned_cols=132  Identities=22%  Similarity=0.301  Sum_probs=95.2

Q ss_pred             eeEEEeCC-cEEEEEcCCCCcHHHHHHHHhCC-CCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHH
Q psy7367          20 LNVNFYED-QITSFLGHNGAGKTTTISMLMGM-LPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWF   97 (251)
Q Consensus        20 isl~i~~G-e~~~liG~NGaGKSTLlk~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~   97 (251)
                      +|+++.++ ++++|+||||+|||||||+++|. +.+..|                    .++|.....  .+.+.+.+. 
T Consensus       314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G--------------------~~Vpa~~~~--~~~~~d~i~-  370 (771)
T TIGR01069       314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG--------------------IPIPANEHS--EIPYFEEIF-  370 (771)
T ss_pred             ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC--------------------CCccCCccc--cccchhhee-
Confidence            78899887 99999999999999999999986 333333                    144443211  011112210 


Q ss_pred             HHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH-HHHHH
Q psy7367          98 YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI-WELLI  176 (251)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l-~~~l~  176 (251)
                          .....                ........+++|+||++++.|++++ .+|+++|+|||++|+||.....+ ..++.
T Consensus       371 ----~~i~~----------------~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe  429 (771)
T TIGR01069       371 ----ADIGD----------------EQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILE  429 (771)
T ss_pred             ----eecCh----------------HhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHH
Confidence                01111                1122345788999999999998886 89999999999999999999999 46777


Q ss_pred             hhh-CCCeEEEEeCCHHHHH
Q psy7367         177 KYK-KGRTVILTTHYMDEAD  195 (251)
Q Consensus       177 ~l~-~g~tiii~tHd~~~~~  195 (251)
                      .+. .|.++|++||+.+...
T Consensus       430 ~l~~~g~~viitTH~~eL~~  449 (771)
T TIGR01069       430 YLLKQNAQVLITTHYKELKA  449 (771)
T ss_pred             HHHhcCCEEEEECChHHHHH
Confidence            775 5899999999987654

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.73  E-value=2.9e-18  Score=145.99  Aligned_cols=177  Identities=19%  Similarity=0.283  Sum_probs=101.2

Q ss_pred             eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh-CCC--CCCeeEEEEcceeCCC---ChHHhhcceEEEccCCCCC----C
Q psy7367          18 NGLNVNFYEDQITSFLGHNGAGKTTTISMLM-GML--PVSSGTAKIYNHDIRT---DMTTIRRSLGVCPQYNALF----D   87 (251)
Q Consensus        18 ~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~-Gl~--~p~~G~i~~~g~~~~~---~~~~~~~~i~~v~q~~~l~----~   87 (251)
                      +...+.+.+| +..|+|||||||||++.+|. .+-  +..+....-...-+..   ........|...+++..-.    .
T Consensus        16 ~~~~~~~~~~-~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~   94 (220)
T PF02463_consen   16 KNAELSFSPG-LNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDK   94 (220)
T ss_dssp             CEEEEETTSS-EEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSS
T ss_pred             CeEEEecCCC-CEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Confidence            5667777664 99999999999999999993 222  1111110000000000   0011123355554443211    0


Q ss_pred             -CCCHHHHHHHH----HHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHH----ccCCCEEEEeC
Q psy7367          88 -KLTVEEHMWFY----SQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF----IGGSRTVILDE  158 (251)
Q Consensus        88 -~ltv~e~l~~~----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al----~~~p~llllDE  158 (251)
                       ...+...+.-.    ..+.+  .....+.+.+.+..+.+...      .||||||.+++||.-|    ..+++++||||
T Consensus        95 ~~~~i~r~~~~~~~~~~~in~--~~~~~~~~~~~l~~~~i~~~------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDE  166 (220)
T PF02463_consen   95 KEIEISRRIDRKGRSEYKING--KKVRLKDLEELLPEVGISPE------FLSGGEKSLVALALLLALQRYKPSPFLILDE  166 (220)
T ss_dssp             SEEEEEEEEETTS-EEEEETT--EEE-HHHHHHHHHCTTTTTT------GS-HHHHHHHHHHHHHHHHTCS--SEEEEES
T ss_pred             ccccccccccccccccccccc--cccccccccccccccccccc------ccccccccccccccccccccccccccccccc
Confidence             00000000000    00111  11122446666776666543      9999999999999765    46889999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEe
Q psy7367         159 PTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAII  204 (251)
Q Consensus       159 Pt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l  204 (251)
                      |.++||...+..+.++|.++.++.=+|++||+...+. .||+.+.+
T Consensus       167 vd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~-~a~~~~~v  211 (220)
T PF02463_consen  167 VDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFE-DADKLIGV  211 (220)
T ss_dssp             TTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHT-T-SEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            9999999999999999999977788999999977765 57887655

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>KOG0063|consensus

Probab=99.68  E-value=7.9e-17  Score=146.27  Aligned_cols=173  Identities=20%  Similarity=0.223  Sum_probs=126.5

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEE--------ccCC---CCCCCCCHHH
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC--------PQYN---ALFDKLTVEE   93 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v--------~q~~---~l~~~ltv~e   93 (251)
                      .+|++.|++|.||-||||-+++++|-++|.-|..- ++-+       |..-++|.        |+.+   .+-.... .+
T Consensus        98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~-------w~~il~~frgselq~yftk~le~~lk~~~k-pQ  168 (592)
T KOG0063|consen   98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPD-------WQEILTYFRGSELQNYFTKILEDNLKAIIK-PQ  168 (592)
T ss_pred             CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcc-------hHHHhhhhhhHHHhhhhhhhccccccCcCC-hH
Confidence            57999999999999999999999999999877531 1111       11111111        1110   0000001 11


Q ss_pred             HHH-HHHHhcC-----CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q psy7367          94 HMW-FYSQLKQ-----VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS  167 (251)
Q Consensus        94 ~l~-~~~~~~~-----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~  167 (251)
                      ++. ++....+     +.....++...++++.+.|...+++.+.+||||+-||.+||.+.+++++++++|||.+.||...
T Consensus       169 yvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQ  248 (592)
T KOG0063|consen  169 YVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQ  248 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHH
Confidence            221 1111110     1122223356778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367         168 RRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAA  206 (251)
Q Consensus       168 ~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~  206 (251)
                      +-.-...++.+- ...-||+|.||+..+..++|-+-.+..
T Consensus       249 RLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYG  288 (592)
T KOG0063|consen  249 RLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYG  288 (592)
T ss_pred             hhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEec
Confidence            999999999985 588999999999999999999888863

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.67  E-value=6.3e-17  Score=122.69  Aligned_cols=77  Identities=16%  Similarity=0.270  Sum_probs=64.0

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh-HHhhcceEEEccCCCCCCCCCHH
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM-TTIRRSLGVCPQYNALFDKLTVE   92 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~i~~v~q~~~l~~~ltv~   92 (251)
                      +.+|++++|++++|++++|+||||||||||++++.      +|++.++|.++.... ...++.++|+||+  +|+ .|++
T Consensus         2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~ti~   72 (107)
T cd00820           2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IRLR   72 (107)
T ss_pred             ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hhHH
Confidence            57999999999999999999999999999999986      899999999985432 3345567777777  554 4999


Q ss_pred             HHHHHHH
Q psy7367          93 EHMWFYS   99 (251)
Q Consensus        93 e~l~~~~   99 (251)
                      |||.+..
T Consensus        73 ~Ni~~~~   79 (107)
T cd00820          73 LNIFLIT   79 (107)
T ss_pred             hhceeee
Confidence            9998743

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.67  E-value=8.6e-17  Score=136.46  Aligned_cols=146  Identities=15%  Similarity=0.103  Sum_probs=87.2

Q ss_pred             EEEEEcCCCCcHHHHH-HHHhCCCCC-----------------CeeEEEEcceeCCCCh--HHhhcceEEEccCCC--CC
Q psy7367          29 ITSFLGHNGAGKTTTI-SMLMGMLPV-----------------SSGTAKIYNHDIRTDM--TTIRRSLGVCPQYNA--LF   86 (251)
Q Consensus        29 ~~~liG~NGaGKSTLl-k~l~Gl~~p-----------------~~G~i~~~g~~~~~~~--~~~~~~i~~v~q~~~--l~   86 (251)
                      .++|+|+||||||||+ +.+.|..++                 +.|.+.+...++....  ...+  .+|+.+...  +.
T Consensus        11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~--~~~~~~~~~~i~v   88 (215)
T PTZ00132         11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLR--DGYYIKGQCAIIM   88 (215)
T ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhh--HHHhccCCEEEEE
Confidence            4899999999999999 688988654                 4678888888874211  1111  122222211  01


Q ss_pred             CCCC---HHHHHHHH----HHh----------cCCC--hHHHHHHHHHHHHHcCCCcccCCCCCcCChh--HHHHHHHHH
Q psy7367          87 DKLT---VEEHMWFY----SQL----------KQVP--KDLAQLEISNMIVDLGIPHKRTSLANTLSGG--MQRKLSVAM  145 (251)
Q Consensus        87 ~~lt---v~e~l~~~----~~~----------~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG--~kqrv~ia~  145 (251)
                      .+.|   -.+++...    ...          .+..  ..........+.+..++. ..  ..+..||+  +++++.||+
T Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~--e~Sa~~~~~v~~~f~~ia~  165 (215)
T PTZ00132         89 FDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQ-YY--DISAKSNYNFEKPFLWLAR  165 (215)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCE-EE--EEeCCCCCCHHHHHHHHHH
Confidence            1111   11111110    000          0111  111111122333444432 11  23444444  899999999


Q ss_pred             HHccCCCEEEEeCCC-----CCCCHHHHHHHHHHHHhhh
Q psy7367         146 AFIGGSRTVILDEPT-----SGVDPYSRRSIWELLIKYK  179 (251)
Q Consensus       146 al~~~p~llllDEPt-----~gLD~~~~~~l~~~l~~l~  179 (251)
                      +++.+|+++++||||     ++|||..++.+.+++++++
T Consensus       166 ~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~  204 (215)
T PTZ00132        166 RLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA  204 (215)
T ss_pred             HHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence            999999999999999     9999999999999999875

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=99.66  E-value=6.4e-16  Score=144.02  Aligned_cols=174  Identities=20%  Similarity=0.229  Sum_probs=116.8

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC---------ChHHhhcceEEEccCCC
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT---------DMTTIRRSLGVCPQYNA   84 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~---------~~~~~~~~i~~v~q~~~   84 (251)
                      ..+++++ |.+.+|++++|+|+||+|||||+++|+|+.+|+.|.|.+.|+.-..         ....+++.|+++.+...
T Consensus       146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~  224 (438)
T PRK07721        146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ  224 (438)
T ss_pred             hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence            5689999 9999999999999999999999999999999999999996654321         12235678899975422


Q ss_pred             CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCE-EEEeCC--CC
Q psy7367          85 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRT-VILDEP--TS  161 (251)
Q Consensus        85 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~l-lllDEP--t~  161 (251)
                           ++.+-+.-..         ..-.+.+.+..-|-+-+.  -..+++     |  .|+|+-   ++ +.+.||  |+
T Consensus       225 -----~~~~r~~~~~---------~a~~iAEyfr~~g~~Vll--~~Dslt-----r--~A~A~r---Eisl~~ge~P~~~  278 (438)
T PRK07721        225 -----PALMRIKGAY---------TATAIAEYFRDQGLNVML--MMDSVT-----R--VAMAQR---EIGLAVGEPPTTK  278 (438)
T ss_pred             -----CHHHHHHHHH---------HHHHHHHHHHHCCCcEEE--EEeChH-----H--HHHHHH---HHHHhcCCCCccc
Confidence                 1111111000         001122233223322111  011222     1  122210   00 123454  68


Q ss_pred             CCCHHHHHHHHHHHHhhh---CCC-----eEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHH
Q psy7367         162 GVDPYSRRSIWELLIKYK---KGR-----TVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  216 (251)
Q Consensus       162 gLD~~~~~~l~~~l~~l~---~g~-----tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~  216 (251)
                      |+||.....+.+++.++.   .|.     ||++.+||+++  .+||++..|.+|+++.+++..
T Consensus       279 G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~~la  339 (438)
T PRK07721        279 GYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFVLDRQLA  339 (438)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEEeccHH
Confidence            999999999999999885   375     99999999995  789999999999999998754

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=99.64  E-value=8.3e-16  Score=152.58  Aligned_cols=147  Identities=21%  Similarity=0.316  Sum_probs=103.6

Q ss_pred             eeEEEe-CCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceE-EEccCCCCCCCCCHHHHHHH
Q psy7367          20 LNVNFY-EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLG-VCPQYNALFDKLTVEEHMWF   97 (251)
Q Consensus        20 isl~i~-~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~-~v~q~~~l~~~ltv~e~l~~   97 (251)
                      .++++. .+.++.|+|||++||||+||.++...                    +-.++| +||-...  ..+++.+++. 
T Consensus       319 ndi~l~~~~~~~iITGpN~gGKTt~lktigl~~--------------------~maq~G~~vpa~~~--~~i~~~~~i~-  375 (782)
T PRK00409        319 KDISLGFDKTVLVITGPNTGGKTVTLKTLGLAA--------------------LMAKSGLPIPANEP--SEIPVFKEIF-  375 (782)
T ss_pred             ceeEECCCceEEEEECCCCCCcHHHHHHHHHHH--------------------HHHHhCCCcccCCC--ccccccceEE-
Confidence            355554 35789999999999999999996321                    111223 4443311  0122223221 


Q ss_pred             HHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH-HHH
Q psy7367          98 YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE-LLI  176 (251)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~-~l~  176 (251)
                                          ..+|-.+...+.++++|+||+|++.|++++ .+|+++|+|||++|+||.....+.. ++.
T Consensus       376 --------------------~~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile  434 (782)
T PRK00409        376 --------------------ADIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILE  434 (782)
T ss_pred             --------------------EecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHH
Confidence                                012333444567899999999999999998 8999999999999999999988865 566


Q ss_pred             hhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEe
Q psy7367         177 KYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQC  211 (251)
Q Consensus       177 ~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~  211 (251)
                      .+. .|.++|++||+.+.....+++..++ ++.+.+
T Consensus       435 ~l~~~~~~vIitTH~~el~~~~~~~~~v~-~~~~~~  469 (782)
T PRK00409        435 YLRKRGAKIIATTHYKELKALMYNREGVE-NASVEF  469 (782)
T ss_pred             HHHHCCCEEEEECChHHHHHHHhcCCCeE-EEEEEE
Confidence            664 5899999999999988777766554 455554

>TIGR00618 sbcc exonuclease SbcC

Probab=99.63  E-value=1.1e-15  Score=156.52  Aligned_cols=87  Identities=17%  Similarity=0.154  Sum_probs=79.6

Q ss_pred             CCCcccCCCCCcCChhHHHHHHHHHHHcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeC
Q psy7367         121 GIPHKRTSLANTLSGGMQRKLSVAMAFIG----------GSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTH  189 (251)
Q Consensus       121 ~l~~~~~~~~~~LSgG~kqrv~ia~al~~----------~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tH  189 (251)
                      ++....++++..|||||++||+||+||+.          +|++||+||||++||+.+...+++.|..+. .|++|+||||
T Consensus       939 ~~~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH 1018 (1042)
T TIGR00618       939 DAYTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISH 1018 (1042)
T ss_pred             eCCCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence            34456677899999999999999999986          899999999999999999999999999986 5899999999


Q ss_pred             CHHHHHhhcCEEEEeeCC
Q psy7367         190 YMDEADLLGDRIAIIAAG  207 (251)
Q Consensus       190 d~~~~~~~~d~i~~l~~G  207 (251)
                      ++++...+||+|.|++.+
T Consensus      1019 ~~~~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618      1019 VPEFRERIPHRILVKKTN 1036 (1042)
T ss_pred             cHHHHHhhCCEEEEEECC
Confidence            999999999999999754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.62  E-value=2e-15  Score=129.21  Aligned_cols=138  Identities=16%  Similarity=0.155  Sum_probs=90.2

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhC-CCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMG-MLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE   92 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~   92 (251)
                      +.+.+|++|++.+|++++|+||||+||||+++++++ .+.+..|..... +.         -.++|..|-   |..+...
T Consensus        18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a-~~---------~~~~~~~~i---~~~~~~~   84 (222)
T cd03287          18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA-SS---------ATLSIFDSV---LTRMGAS   84 (222)
T ss_pred             CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc-Cc---------eEEeccceE---EEEecCc
Confidence            568899999999999999999999999999999999 567788875542 11         123333322   1111112


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH-
Q psy7367          93 EHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI-  171 (251)
Q Consensus        93 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l-  171 (251)
                      |++.-..+                               .++ .|-++++-+..-+.+|.++|+|||.+|.|+.....+ 
T Consensus        85 d~~~~~~S-------------------------------tF~-~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~  132 (222)
T cd03287          85 DSIQHGMS-------------------------------TFM-VELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIA  132 (222)
T ss_pred             cccccccc-------------------------------hHH-HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHH
Confidence            22211000                               000 011222222223568999999999999987776664 


Q ss_pred             HHHHHhhh-C-CCeEEEEeCCHHHHHh
Q psy7367         172 WELLIKYK-K-GRTVILTTHYMDEADL  196 (251)
Q Consensus       172 ~~~l~~l~-~-g~tiii~tHd~~~~~~  196 (251)
                      ..++..+. . +.++|++||+.+...-
T Consensus       133 ~~il~~l~~~~~~~~i~~TH~~~l~~~  159 (222)
T cd03287         133 YATLHYLLEEKKCLVLFVTHYPSLGEI  159 (222)
T ss_pred             HHHHHHHHhccCCeEEEEcccHHHHHH
Confidence            55666664 3 8899999999988653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR00634 recN DNA repair protein RecN

Probab=99.62  E-value=1.5e-15  Score=146.42  Aligned_cols=77  Identities=22%  Similarity=0.254  Sum_probs=71.5

Q ss_pred             CcCChhHHHHHHHHHHHccC----CCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367         131 NTLSGGMQRKLSVAMAFIGG----SRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAA  206 (251)
Q Consensus       131 ~~LSgG~kqrv~ia~al~~~----p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~  206 (251)
                      ..|||||+||++||++++..    |+++||||||+|||+..+..+.+.|+++.++.+||++||++..+. +||++++|++
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~-~ad~~~~l~k  517 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAA-HADAHFKVEK  517 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHH-hcCeEEEEEE
Confidence            37899999999999999985    699999999999999999999999999977899999999998885 8999999988


Q ss_pred             CE
Q psy7367         207 GK  208 (251)
Q Consensus       207 G~  208 (251)
                      |.
T Consensus       518 ~~  519 (563)
T TIGR00634       518 EG  519 (563)
T ss_pred             cc
Confidence            64

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.60  E-value=2.1e-15  Score=145.09  Aligned_cols=80  Identities=20%  Similarity=0.294  Sum_probs=71.4

Q ss_pred             CCCCcCChhHHHHHHHHHHHc----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHh
Q psy7367         128 SLANTLSGGMQRKLSVAMAFI----------GGSRTVILDEPT-SGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADL  196 (251)
Q Consensus       128 ~~~~~LSgG~kqrv~ia~al~----------~~p~llllDEPt-~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~  196 (251)
                      .++..|||||+||++||+||+          .+|+++|||||| ++||+..+..+.+.|.++ ++.+||++||+.+.. .
T Consensus       464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~~~~iiiish~~~~~-~  541 (562)
T PHA02562        464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-KDTNVFVISHKDHDP-Q  541 (562)
T ss_pred             cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-CCCeEEEEECchhch-h
Confidence            366899999999999999987          599999999998 789999999999999999 789999999997766 4


Q ss_pred             hcCEEEEeeC-CEE
Q psy7367         197 LGDRIAIIAA-GKL  209 (251)
Q Consensus       197 ~~d~i~~l~~-G~i  209 (251)
                      .||++++|.+ |..
T Consensus       542 ~~d~~~~l~~~~~~  555 (562)
T PHA02562        542 KFDRHLKMEKVGRF  555 (562)
T ss_pred             hhhcEEEEEEECCe
Confidence            6899999986 543

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.57  E-value=2.9e-15  Score=129.02  Aligned_cols=147  Identities=14%  Similarity=0.153  Sum_probs=87.3

Q ss_pred             EEeCCcEEEEEcCCCCcHHHH-HHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHh
Q psy7367          23 NFYEDQITSFLGHNGAGKTTT-ISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL  101 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTL-lk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~  101 (251)
                      .+++|+++.|+|||||||||| +++++++.++....                   .|+..      ..+..+.+.....+
T Consensus        20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~-------------------~yi~~------e~~~~~~~~~~~~~   74 (230)
T PRK08533         20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSV-------------------SYVST------QLTTTEFIKQMMSL   74 (230)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcE-------------------EEEeC------CCCHHHHHHHHHHh
Confidence            389999999999999999999 79999887643222                   23321      12333433332222


Q ss_pred             cCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc----cCCCEEEEeCCCCCC----CHHHHHHHHH
Q psy7367         102 KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI----GGSRTVILDEPTSGV----DPYSRRSIWE  173 (251)
Q Consensus       102 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~----~~p~llllDEPt~gL----D~~~~~~l~~  173 (251)
                       +...+       ++... +.-...+-. ..+|+++.++..+++.+-    .+|+++++||||+++    |+..++.+++
T Consensus        75 -g~~~~-------~~~~~-~~l~~~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~  144 (230)
T PRK08533         75 -GYDIN-------KKLIS-GKLLYIPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMA  144 (230)
T ss_pred             -CCchH-------HHhhc-CcEEEEEec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHH
Confidence             11110       11110 100011111 235666655555444433    369999999999999    8888899999


Q ss_pred             HHHhhh-CCCeEEEEeCCHHHH--------HhhcCEEEEee
Q psy7367         174 LLIKYK-KGRTVILTTHYMDEA--------DLLGDRIAIIA  205 (251)
Q Consensus       174 ~l~~l~-~g~tiii~tHd~~~~--------~~~~d~i~~l~  205 (251)
                      +++.++ .|.|+++ ||+....        +.+||-++.|+
T Consensus       145 ~l~~l~~~g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~  184 (230)
T PRK08533        145 FFKRISSLNKVIIL-TANPKELDESVLTILRTAATMLIRLE  184 (230)
T ss_pred             HHHHHHhCCCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence            999885 4776655 5554432        33455555554

>PRK10869 recombination and repair protein; Provisional

Probab=99.57  E-value=1.1e-14  Score=139.79  Aligned_cols=76  Identities=21%  Similarity=0.294  Sum_probs=70.3

Q ss_pred             cCChhHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCC
Q psy7367         132 TLSGGMQRKLSVAMAFIG----GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAG  207 (251)
Q Consensus       132 ~LSgG~kqrv~ia~al~~----~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G  207 (251)
                      .|||||+||++||++++.    +|+++|||||++|||+.....+.+.|++++++.+||+|||++..+ .+||+.+.+.++
T Consensus       430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~-~~ad~~~~v~k~  508 (553)
T PRK10869        430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVA-GCGHQHFFVSKE  508 (553)
T ss_pred             hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEecc
Confidence            479999999999999997    689999999999999999999999999997789999999999877 689999999874


Q ss_pred             E
Q psy7367         208 K  208 (251)
Q Consensus       208 ~  208 (251)
                      .
T Consensus       509 ~  509 (553)
T PRK10869        509 T  509 (553)
T ss_pred             c
Confidence            3

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=99.56  E-value=7.2e-15  Score=127.83  Aligned_cols=177  Identities=18%  Similarity=0.205  Sum_probs=108.3

Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCee--EEEEc--ceeCCCChHHhhcce---EEEccCCCCCCCC---C
Q psy7367          21 NVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG--TAKIY--NHDIRTDMTTIRRSL---GVCPQYNALFDKL---T   90 (251)
Q Consensus        21 sl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G--~i~~~--g~~~~~~~~~~~~~i---~~v~q~~~l~~~l---t   90 (251)
                      =+.+.+|+.++|+||+|+|||||++.|++......+  .+++.  +.. .....++.+.+   -++.+-. ..+..   .
T Consensus        10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er-~~ev~el~~~I~~~~v~~~~~-~~~~~~~~~   87 (249)
T cd01128          10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER-PEEVTDMQRSVKGEVIASTFD-EPPERHVQV   87 (249)
T ss_pred             ecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC-CccHHHHHHHhccEEEEecCC-CCHHHHHHH
Confidence            357899999999999999999999999998876533  32322  111 11222333222   2222211 11100   0


Q ss_pred             HHHHHHHHHHh--cCCC----hHHHHHHHHHHHHHcCCCcccCCCCCcCChhH--------HHHHHHHHHHccCCCEEEE
Q psy7367          91 VEEHMWFYSQL--KQVP----KDLAQLEISNMIVDLGIPHKRTSLANTLSGGM--------QRKLSVAMAFIGGSRTVIL  156 (251)
Q Consensus        91 v~e~l~~~~~~--~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~--------kqrv~ia~al~~~p~llll  156 (251)
                      .+.-+.....+  .+..    -++. .+.....+.+...     ....+|||+        +||+++||++..++++.+|
T Consensus        88 ~~~~~~~a~~~~~~G~~vll~iDei-~r~a~a~~ev~~~-----~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l  161 (249)
T cd01128          88 AEMVLEKAKRLVEHGKDVVILLDSI-TRLARAYNTVVPP-----SGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII  161 (249)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECH-HHhhhhhhhcccc-----CCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe
Confidence            11111111111  1100    0111 1222333333322     233469999        9999999999999999999


Q ss_pred             eCCCCCCCHHHHHH-HHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEE
Q psy7367         157 DEPTSGVDPYSRRS-IWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQ  210 (251)
Q Consensus       157 DEPt~gLD~~~~~~-l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~  210 (251)
                        ||+.+|+.+... ++  +.+++ .+.|.|+.||++.... ..|.|.+|+.|++.
T Consensus       162 --~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~-~~paI~vl~s~sr~  212 (249)
T cd01128         162 --ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERR-IFPAIDILKSGTRK  212 (249)
T ss_pred             --eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCC-CCCeEEEcCCCCcc
Confidence              999999644443 43  45555 4789999999999986 58999999999984

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK13695 putative NTPase; Provisional

Probab=99.55  E-value=2.3e-15  Score=123.91  Aligned_cols=82  Identities=16%  Similarity=0.141  Sum_probs=65.0

Q ss_pred             CCCCCcCChhHHHHHHHHHHHccCCCEEEEeC--CCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEe
Q psy7367         127 TSLANTLSGGMQRKLSVAMAFIGGSRTVILDE--PTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAII  204 (251)
Q Consensus       127 ~~~~~~LSgG~kqrv~ia~al~~~p~llllDE--Pt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l  204 (251)
                      .+....+|++++-++.+++..+.+|+++++||  |+.++|+..++.+.+++   ..+.++|+++|+ ..+..++|++..+
T Consensus        73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~-~~~~~~~~~i~~~  148 (174)
T PRK13695         73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHR-RSVHPFVQEIKSR  148 (174)
T ss_pred             eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECc-hhhHHHHHHHhcc
Confidence            34566899999999999999999999999999  55566655444433333   358999999999 4556789999999


Q ss_pred             eCCEEEee
Q psy7367         205 AAGKLQCC  212 (251)
Q Consensus       205 ~~G~i~~~  212 (251)
                      .+|++...
T Consensus       149 ~~~~i~~~  156 (174)
T PRK13695        149 PGGRVYEL  156 (174)
T ss_pred             CCcEEEEE
Confidence            99999765

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=99.55  E-value=1.4e-13  Score=117.54  Aligned_cols=140  Identities=18%  Similarity=0.205  Sum_probs=91.9

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-eeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS-SGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE   92 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~   92 (251)
                      +.+-+|++|+.++|++++|+||||+||||+++++++..-.. .|-      .+..    -...++++   ..+|..+...
T Consensus        17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~vpa----~~~~i~~~---~~i~~~~~~~   83 (218)
T cd03286          17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DVPA----KSMRLSLV---DRIFTRIGAR   83 (218)
T ss_pred             CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------ccCc----cccEeccc---cEEEEecCcc
Confidence            57889999999999999999999999999999999863221 111      1100    01112221   1223333333


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH
Q psy7367          93 EHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW  172 (251)
Q Consensus        93 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~  172 (251)
                      |++.....                               .++ -|-++++-+...+.+|+++|+|||++|.|+.....+.
T Consensus        84 d~~~~~~S-------------------------------tF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la  131 (218)
T cd03286          84 DDIMKGES-------------------------------TFM-VELSETANILRHATPDSLVILDELGRGTSTHDGYAIA  131 (218)
T ss_pred             cccccCcc-------------------------------hHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHH
Confidence            43322110                               000 1222333333335789999999999999999999888


Q ss_pred             HH-HHhhh-C-CCeEEEEeCCHHHHHhhc
Q psy7367         173 EL-LIKYK-K-GRTVILTTHYMDEADLLG  198 (251)
Q Consensus       173 ~~-l~~l~-~-g~tiii~tHd~~~~~~~~  198 (251)
                      .. ++.+. . +.++|++||+++.+..++
T Consensus       132 ~ail~~L~~~~~~~~i~~TH~~el~~~~~  160 (218)
T cd03286         132 HAVLEYLVKKVKCLTLFSTHYHSLCDEFH  160 (218)
T ss_pred             HHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence            87 55664 3 899999999999998876

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=99.55  E-value=2.9e-14  Score=132.30  Aligned_cols=164  Identities=15%  Similarity=0.148  Sum_probs=119.1

Q ss_pred             EEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccC
Q psy7367           3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQY   82 (251)
Q Consensus         3 i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~   82 (251)
                      .+.++..|..+..+++.+ |.+.+|+.++|+|+||+|||||+++|++..+|+.|.|.+.|+..                 
T Consensus       133 r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg-----------------  194 (432)
T PRK06793        133 REEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG-----------------  194 (432)
T ss_pred             eechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc-----------------
Confidence            345666675456788885 99999999999999999999999999999999988776655431                 


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc-------cCCCEEE
Q psy7367          83 NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI-------GGSRTVI  155 (251)
Q Consensus        83 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~-------~~p~lll  155 (251)
                            .+|.|++.......+..+                 ...=....+.|.|+|+|++.+.+.+       .++-+++
T Consensus       195 ------~ev~e~~~~~l~~~gl~~-----------------tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLli  251 (432)
T PRK06793        195 ------REVKDFIRKELGEEGMRK-----------------SVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLM  251 (432)
T ss_pred             ------ccHHHHHHHHhhhcccce-----------------eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence                  356665543221111110                 0011346789999999999999887       8999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367         156 LDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  213 (251)
Q Consensus       156 lDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g  213 (251)
                      +|+||...|+.  +++...+.+.. .|.+..+.||-..    +++|......|.|....
T Consensus       252 lDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~----L~ERag~~~~GSiT~~~  304 (432)
T PRK06793        252 MDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKK----LLERSGKTQKGSITGIY  304 (432)
T ss_pred             ecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchh----HHHHhccCCCcceEEEE
Confidence            99999999996  56666666664 5888888888543    44444446788886544

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=99.55  E-value=2.6e-14  Score=120.66  Aligned_cols=66  Identities=30%  Similarity=0.398  Sum_probs=54.9

Q ss_pred             CCCcCChhHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHhhhC-CCeEEEEeCCHHHH
Q psy7367         129 LANTLSGGMQRKLSVAMAFIGGS---RTVILDEPTSGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEA  194 (251)
Q Consensus       129 ~~~~LSgG~kqrv~ia~al~~~p---~llllDEPt~gLD~~~~~~l~~~l~~l~~-g~tiii~tHd~~~~  194 (251)
                      ++..+|.|+||.+.++.++...+   .++++|||-++|+|..++.++++|.+..+ +.-||++||++..+
T Consensus       233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il  302 (303)
T PF13304_consen  233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL  302 (303)
T ss_dssp             GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred             eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence            45677999999999888887766   89999999999999999999999988865 88999999997654

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=99.54  E-value=4.6e-14  Score=116.62  Aligned_cols=143  Identities=18%  Similarity=0.085  Sum_probs=99.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC-CCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChH
Q psy7367          29 ITSFLGHNGAGKTTTISMLMG-MLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD  107 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~  107 (251)
                      ++.|.||.|+|||||.--++- ..+.        |           ..+.|+.=      ..|..+.+.....+ +....
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~--------g-----------~~v~~~s~------e~~~~~~~~~~~~~-g~~~~   54 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLAR--------G-----------EPGLYVTL------EESPEELIENAESL-GWDLE   54 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHC--------C-----------CcEEEEEC------CCCHHHHHHHHHHc-CCChH
Confidence            367899999999998765432 2221        1           12333321      12444444332222 32211


Q ss_pred             HHHHHHHHHHHHcCCCcccCCCCCcCChhHHH------HHHHHHHHccCCCEEEEeCCCCCCC---HHHHHHHHHHHHhh
Q psy7367         108 LAQLEISNMIVDLGIPHKRTSLANTLSGGMQR------KLSVAMAFIGGSRTVILDEPTSGVD---PYSRRSIWELLIKY  178 (251)
Q Consensus       108 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kq------rv~ia~al~~~p~llllDEPt~gLD---~~~~~~l~~~l~~l  178 (251)
                              .+...+.....+..+..+|+|++|      ....+.+...+|+++++|||++.+|   ...+..+.+++..+
T Consensus        55 --------~l~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l  126 (187)
T cd01124          55 --------RLEDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFAL  126 (187)
T ss_pred             --------HHHhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHH
Confidence                    133445556677888999999998      5555556678999999999999999   88888888888888


Q ss_pred             h-CCCeEEEEeCCHHH---------HHhhcCEEEEee
Q psy7367         179 K-KGRTVILTTHYMDE---------ADLLGDRIAIIA  205 (251)
Q Consensus       179 ~-~g~tiii~tHd~~~---------~~~~~d~i~~l~  205 (251)
                      + .|.|+|+++|+...         +..+||.++.|+
T Consensus       127 ~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~  163 (187)
T cd01124         127 KRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR  163 (187)
T ss_pred             HHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence            5 59999999998775         678899999887

A related protein is found in archaea.

>PRK03918 chromosome segregation protein; Provisional

Probab=99.51  E-value=4.8e-14  Score=142.22  Aligned_cols=79  Identities=27%  Similarity=0.393  Sum_probs=69.8

Q ss_pred             cCCCCCcCChhHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhc
Q psy7367         126 RTSLANTLSGGMQR------KLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLG  198 (251)
Q Consensus       126 ~~~~~~~LSgG~kq------rv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~  198 (251)
                      .++++..|||||+|      |++||++++.+|+++||||||++||+..+..+.++|..+. .+.+||++||+++. ..+|
T Consensus       782 ~~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~-~~~~  860 (880)
T PRK03918        782 KERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEEL-KDAA  860 (880)
T ss_pred             CcCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHhC
Confidence            34678999999999      5556668889999999999999999999999999999875 47899999999875 4689


Q ss_pred             CEEEEee
Q psy7367         199 DRIAIIA  205 (251)
Q Consensus       199 d~i~~l~  205 (251)
                      |++++|.
T Consensus       861 d~~~~l~  867 (880)
T PRK03918        861 DYVIRVS  867 (880)
T ss_pred             CeEEEEE
Confidence            9999998

>PRK01156 chromosome segregation protein; Provisional

Probab=99.50  E-value=1.3e-13  Score=139.55  Aligned_cols=93  Identities=18%  Similarity=0.247  Sum_probs=77.0

Q ss_pred             HHHHHHHHcCCCc----------------ccCCCCCcCChhHHHHHHH------HHHHccCCCEEEEeCCCCCCCHHHHH
Q psy7367         112 EISNMIVDLGIPH----------------KRTSLANTLSGGMQRKLSV------AMAFIGGSRTVILDEPTSGVDPYSRR  169 (251)
Q Consensus       112 ~~~~~l~~~~l~~----------------~~~~~~~~LSgG~kqrv~i------a~al~~~p~llllDEPt~gLD~~~~~  169 (251)
                      .+.+++..|++..                ....++..|||||++|++|      |++++.+|++++|||||++||+..+.
T Consensus       765 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~  844 (895)
T PRK01156        765 LTRKYLFEFNLDFDDIDVDQDFNITVSRGGMVEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRT  844 (895)
T ss_pred             HHHHHHHHhCCCccceeecCCeeEEEEeCCccCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHH
Confidence            4556777777641                1224688999999999975      58999999999999999999999999


Q ss_pred             HHHHHHHhh-hC--C-CeEEEEeCCHHHHHhhcCEEEEee
Q psy7367         170 SIWELLIKY-KK--G-RTVILTTHYMDEADLLGDRIAIIA  205 (251)
Q Consensus       170 ~l~~~l~~l-~~--g-~tiii~tHd~~~~~~~~d~i~~l~  205 (251)
                      .+.+++... +.  + .+||++|||.+.+ .+||+++.+.
T Consensus       845 ~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~~d~ii~~~  883 (895)
T PRK01156        845 NLKDIIEYSLKDSSDIPQVIMISHHRELL-SVADVAYEVK  883 (895)
T ss_pred             HHHHHHHHHHHhcCCCCeEEEEECchHHH-HhcCeEEEEE
Confidence            999999864 33  3 4899999999987 5899999998

>TIGR00606 rad50 rad50

Probab=99.49  E-value=1e-13  Score=144.93  Aligned_cols=72  Identities=26%  Similarity=0.381  Sum_probs=65.5

Q ss_pred             CCCCcCChhHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh------CCCeEEEEeCCHHHHH
Q psy7367         128 SLANTLSGGMQR------KLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK------KGRTVILTTHYMDEAD  195 (251)
Q Consensus       128 ~~~~~LSgG~kq------rv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~------~g~tiii~tHd~~~~~  195 (251)
                      ..++.||+||||      |++||+|++.+|++|+|||||++||+.+...+.+.|..+.      .|.+||+||||++++.
T Consensus      1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~ 1274 (1311)
T TIGR00606      1195 DMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVE 1274 (1311)
T ss_pred             CCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHH
Confidence            355799999999      9999999999999999999999999999999999887761      3789999999999999


Q ss_pred             hhcC
Q psy7367         196 LLGD  199 (251)
Q Consensus       196 ~~~d  199 (251)
                      .+|.
T Consensus      1275 ~~~~ 1278 (1311)
T TIGR00606      1275 LLGR 1278 (1311)
T ss_pred             HHhh
Confidence            9874

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.49  E-value=1.1e-13  Score=141.89  Aligned_cols=81  Identities=21%  Similarity=0.218  Sum_probs=75.5

Q ss_pred             cCCCCCcCChhHHHHHHHHHHHcc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHh
Q psy7367         126 RTSLANTLSGGMQRKLSVAMAFIG--------GSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADL  196 (251)
Q Consensus       126 ~~~~~~~LSgG~kqrv~ia~al~~--------~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~  196 (251)
                      ..+++.+|||||+++++||+||+.        +|++||+||||++||+.+...+++.|..++ .|++|+||||..+...+
T Consensus       943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246        943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKER 1022 (1047)
T ss_pred             CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHh
Confidence            357899999999999999999996        899999999999999999999999999996 59999999999999999


Q ss_pred             hcCEEEEeeC
Q psy7367         197 LGDRIAIIAA  206 (251)
Q Consensus       197 ~~d~i~~l~~  206 (251)
                      +..+|.|-..
T Consensus      1023 i~~qi~V~k~ 1032 (1047)
T PRK10246       1023 IPVQIKVKKI 1032 (1047)
T ss_pred             ccceEEEEEC
Confidence            9999988875

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.46  E-value=1e-13  Score=142.64  Aligned_cols=79  Identities=23%  Similarity=0.291  Sum_probs=70.9

Q ss_pred             cCCCCCcCChhHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEE
Q psy7367         126 RTSLANTLSGGMQRKLSVAMAFI----GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRI  201 (251)
Q Consensus       126 ~~~~~~~LSgG~kqrv~ia~al~----~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i  201 (251)
                      .+.++..|||||+||++||++++    .+|+++||||||++||+.++..+.++|..+.++.+||||||++..+ .+||++
T Consensus      1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~-~~~d~~ 1161 (1179)
T TIGR02168      1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTM-EVADQL 1161 (1179)
T ss_pred             ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHH-HHhhhH
Confidence            45688999999999999999984    6789999999999999999999999999987678899999999987 579998


Q ss_pred             EEee
Q psy7367         202 AIIA  205 (251)
Q Consensus       202 ~~l~  205 (251)
                      +.+.
T Consensus      1162 ~~~~ 1165 (1179)
T TIGR02168      1162 YGVT 1165 (1179)
T ss_pred             eeee
Confidence            7654

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=99.46  E-value=1.8e-12  Score=129.85  Aligned_cols=68  Identities=24%  Similarity=0.276  Sum_probs=60.6

Q ss_pred             ccCCCEEEEeCCCCCC-CHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHH---------hhcCEEEEeeCCEEEeecCH
Q psy7367         148 IGGSRTVILDEPTSGV-DPYSRRSIWELLIKYK-KGRTVILTTHYMDEAD---------LLGDRIAIIAAGKLQCCGSS  215 (251)
Q Consensus       148 ~~~p~llllDEPt~gL-D~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~---------~~~d~i~~l~~G~i~~~g~~  215 (251)
                      ..+|+++++|||+.+| |+..++.+.+.++..+ .|.+++++||+++.+.         ..|++.++|.+|++...+..
T Consensus       650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~  728 (818)
T PRK13830        650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR  728 (818)
T ss_pred             CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence            5799999999999999 7999999999999985 5899999999999986         57999999999998665543

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.46  E-value=1.4e-12  Score=126.50  Aligned_cols=132  Identities=26%  Similarity=0.430  Sum_probs=101.3

Q ss_pred             CCCCHHHHHHHHHHhcCCChH---HHHHHHHH------HHHHcCCCcc-cCCCCCcCChhHHHHHHHHHHHccC--CCEE
Q psy7367          87 DKLTVEEHMWFYSQLKQVPKD---LAQLEISN------MIVDLGIPHK-RTSLANTLSGGMQRKLSVAMAFIGG--SRTV  154 (251)
Q Consensus        87 ~~ltv~e~l~~~~~~~~~~~~---~~~~~~~~------~l~~~~l~~~-~~~~~~~LSgG~kqrv~ia~al~~~--p~ll  154 (251)
                      ..|++.+-+.|+..+. ....   -....+.+      .|-.+||..+ ++|...+|||||.||+.||..+-+.  -=++
T Consensus       427 ~~msi~~~~~f~~~l~-l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlY  505 (935)
T COG0178         427 SEMSIADALEFFENLK-LSEKEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLY  505 (935)
T ss_pred             hhccHHHHHHHHHhCC-CchhhHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEE
Confidence            3456666666665543 1111   11112222      3444578753 5789999999999999999998654  3479


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHhhhC-CCeEEEEeCCHHHHHhhcCEEEEe------eCCEEEeecCHHHHHh
Q psy7367         155 ILDEPTSGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVFLKN  220 (251)
Q Consensus       155 llDEPt~gLD~~~~~~l~~~l~~l~~-g~tiii~tHd~~~~~~~~d~i~~l------~~G~i~~~g~~~~~~~  220 (251)
                      +||||+.||-+..-+++++.|+.++. |-|+|+|.||.+.+. .||+|+-|      +.|+|++.|+++++..
T Consensus       506 VLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~-~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~  577 (935)
T COG0178         506 VLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIR-AADHIIDIGPGAGEHGGEIVAEGTPEELLA  577 (935)
T ss_pred             EecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHh-hcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence            99999999999999999999999986 999999999988776 69999998      5689999999987754

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=99.45  E-value=4.6e-13  Score=107.00  Aligned_cols=130  Identities=21%  Similarity=0.191  Sum_probs=81.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHH
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDL  108 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~  108 (251)
                      ++.|.||||+||||+++.+++...+..|.+.+...+.....                     ..++...   ..      
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~---------------------~~~~~~~---~~------   50 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE---------------------LTERLIG---ES------   50 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH---------------------HHHHHhh---hh------
Confidence            47899999999999999999988776666655443321110                     0010000   00      


Q ss_pred             HHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCC----------CCCHHHHHHHHHHHHhh
Q psy7367         109 AQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTS----------GVDPYSRRSIWELLIKY  178 (251)
Q Consensus       109 ~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~----------gLD~~~~~~l~~~l~~l  178 (251)
                          .....   +............+..+.++.+.+++...+|+++++|||++          +.|....+.+.+++...
T Consensus        51 ----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  123 (165)
T cd01120          51 ----LKGAL---DNLIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA  123 (165)
T ss_pred             ----hcccc---ccEEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence                00000   00111122233445556667888999999999999999994          45555567777776666


Q ss_pred             hC-CCeEEEEeCCHHHHH
Q psy7367         179 KK-GRTVILTTHYMDEAD  195 (251)
Q Consensus       179 ~~-g~tiii~tHd~~~~~  195 (251)
                      ++ +.|+|+++|......
T Consensus       124 ~~~~~~vv~~~~~~~~~~  141 (165)
T cd01120         124 RKGGVTVIFTLQVPSGDK  141 (165)
T ss_pred             hcCCceEEEEEecCCccc
Confidence            54 899999999875543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=99.42  E-value=3.3e-13  Score=121.04  Aligned_cols=142  Identities=14%  Similarity=0.144  Sum_probs=96.2

Q ss_pred             eeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHH
Q psy7367          20 LNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYS   99 (251)
Q Consensus        20 isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~   99 (251)
                      +++.+..|+.++|+||+|||||||+++|+++++|..|.+.+.... ..... .+..+.++.+...  .            
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~-El~~~-~~~~~~l~~~~~~--~------------  200 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTR-EIFLP-HPNYVHLFYSKGG--Q------------  200 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCcc-ccCCC-CCCEEEEEecCCC--C------------
Confidence            457788999999999999999999999999999988888774211 00000 0112222221100  0            


Q ss_pred             HhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh
Q psy7367         100 QLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK  179 (251)
Q Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~  179 (251)
                         +                          ....|    ..-.++.+|-++|+++++|||.+       .+++++++...
T Consensus       201 ---~--------------------------~~~~~----~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~  240 (308)
T TIGR02788       201 ---G--------------------------LAKVT----PKDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVN  240 (308)
T ss_pred             ---C--------------------------cCccC----HHHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHh
Confidence               0                          00000    11245567888999999999996       34567777776


Q ss_pred             CCC-eEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         180 KGR-TVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       180 ~g~-tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      .|. +++.++|..+. ....+|+..|..|++...|.+.+.
T Consensus       241 ~g~~~~i~T~Ha~~~-~~~~~Rl~~l~~~~~~~~g~~~~~  279 (308)
T TIGR02788       241 TGHPGSITTLHAGSP-EEAFEQLALMVKSSQAGLGLDFAY  279 (308)
T ss_pred             cCCCeEEEEEeCCCH-HHHHHHHHHHhhccccccCCCHHH
Confidence            654 57999999884 456899999999999887766543

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>COG3910 Predicted ATPase [General function prediction only]

Probab=99.40  E-value=3.2e-12  Score=105.33  Aligned_cols=177  Identities=18%  Similarity=0.230  Sum_probs=107.2

Q ss_pred             Ccceeeeee--EEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--CCeeEEEEcce-eCC-CChHHhhcceEEEccCC--C
Q psy7367          13 GKLAVNGLN--VNFYEDQITSFLGHNGAGKTTTISMLMGMLP--VSSGTAKIYNH-DIR-TDMTTIRRSLGVCPQYN--A   84 (251)
Q Consensus        13 ~~~il~~is--l~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~--p~~G~i~~~g~-~~~-~~~~~~~~~i~~v~q~~--~   84 (251)
                      +.++++++.  |++++ -|+.|+|.||+||||||..|+-...  +..|.=.+.+. +.. ....+. -++...+.-+  .
T Consensus        22 slPa~r~l~~~LeF~a-pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~-~k~~~~~k~~~g~   99 (233)
T COG3910          22 SLPAFRHLEERLEFRA-PITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDY-AKLHKRKKPPIGF   99 (233)
T ss_pred             cchHHHhhhhhccccC-ceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHh-HHHhhcCCCCcce
Confidence            345666654  66666 4999999999999999999875432  22222112111 110 000000 0011111111  1


Q ss_pred             CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q psy7367          85 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD  164 (251)
Q Consensus        85 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD  164 (251)
                      ++..-|.+....+               ++++....   ..-.+.....|.||-=.--+.+.+ ...-++|||||-++|.
T Consensus       100 FlRAEs~yn~as~---------------~De~~~e~---~~~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LS  160 (233)
T COG3910         100 FLRAESFYNVASY---------------LDEADGEA---NYGGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALS  160 (233)
T ss_pred             EEehhHHHHHHHH---------------HHhhhhhc---ccCCcchhhhccchHHHHHHHHHh-ccCceEEecCccccCC
Confidence            1111122111110               11111111   133455778999998766666664 5668999999999999


Q ss_pred             HHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEE
Q psy7367         165 PYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQ  210 (251)
Q Consensus       165 ~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~  210 (251)
                      |.-+-.++..|+++. .|.-+||+||.+-.+.-=--+|+-++.+.+.
T Consensus       161 p~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~~  207 (233)
T COG3910         161 PSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGIE  207 (233)
T ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCcc
Confidence            999999999999996 4999999999987766545778888877653

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.38  E-value=1.1e-12  Score=135.34  Aligned_cols=79  Identities=15%  Similarity=0.101  Sum_probs=70.7

Q ss_pred             CCCCCcCChhHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEE
Q psy7367         127 TSLANTLSGGMQRKLSVAMAFIG----GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIA  202 (251)
Q Consensus       127 ~~~~~~LSgG~kqrv~ia~al~~----~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~  202 (251)
                      .+++..||||||++++||++|+.    +|+++|||||+++||+.++..+.++|.++..+..+|++||+...+ .+||+++
T Consensus      1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~-~~~d~~~ 1147 (1164)
T TIGR02169      1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMI-EYADRAI 1147 (1164)
T ss_pred             CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHH-HhcceeE
Confidence            45677999999999999999984    789999999999999999999999999987778899999998765 6899998


Q ss_pred             EeeC
Q psy7367         203 IIAA  206 (251)
Q Consensus       203 ~l~~  206 (251)
                      .+..
T Consensus      1148 ~~~~ 1151 (1164)
T TIGR02169      1148 GVTM 1151 (1164)
T ss_pred             eEEE
Confidence            7753

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=99.38  E-value=1.6e-12  Score=122.31  Aligned_cols=170  Identities=16%  Similarity=0.247  Sum_probs=113.0

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHH
Q psy7367          16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHM   95 (251)
Q Consensus        16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l   95 (251)
                      ++++.++.+++|.+++++|||||||||++..|++.+.+..|.                .+|+++.+++   ...++.|++
T Consensus       245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~----------------~kV~LI~~Dt---~RigA~EQL  305 (484)
T PRK06995        245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA----------------SKVALLTTDS---YRIGGHEQL  305 (484)
T ss_pred             hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC----------------CeEEEEeCCc---cchhHHHHH
Confidence            566777788899999999999999999999999877655543                2578898886   347899999


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHH-HHHHHHHHccCC-----CEEEEeCCCCCCCHHHHH
Q psy7367          96 WFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQR-KLSVAMAFIGGS-----RTVILDEPTSGVDPYSRR  169 (251)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kq-rv~ia~al~~~p-----~llllDEPt~gLD~~~~~  169 (251)
                      .+++...+.+........+......++.+.....+.+.+.+++- .+.-..+++.++     .+|+||.++.+      .
T Consensus       306 r~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~------~  379 (484)
T PRK06995        306 RIYGKILGVPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG------D  379 (484)
T ss_pred             HHHHHHhCCCeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH------H
Confidence            99988876654333334445556667766555567775444432 223344444444     68999999887      3


Q ss_pred             HHHHHHHhhhC-CCeEEEEeCCH---------HHHHhhcCEEEEeeCCEEE
Q psy7367         170 SIWELLIKYKK-GRTVILTTHYM---------DEADLLGDRIAIIAAGKLQ  210 (251)
Q Consensus       170 ~l~~~l~~l~~-g~tiii~tHd~---------~~~~~~~d~i~~l~~G~i~  210 (251)
                      .+.+.++.++. +.+-+|.|+--         +.+.+..=-|.++..|+-+
T Consensus       380 ~l~~i~~~f~~~~~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~V  430 (484)
T PRK06995        380 TLNEVVQAYRGPGLAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQRV  430 (484)
T ss_pred             HHHHHHHHhccCCCCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCCC
Confidence            35555555543 55555556521         3333333457777777644

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=99.37  E-value=2.1e-13  Score=126.91  Aligned_cols=67  Identities=12%  Similarity=0.051  Sum_probs=53.8

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCee-EEEEcceeCCCChHHhhcceEEEccCC
Q psy7367          15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG-TAKIYNHDIRTDMTTIRRSLGVCPQYN   83 (251)
Q Consensus        15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~i~~v~q~~   83 (251)
                      ++|++||+++++||+++|+|||||||||||+  +|+..|++| +|.++|+++...........-+|||+.
T Consensus        20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR~VFQ~f   87 (504)
T TIGR03238        20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLDEIFDGF   87 (504)
T ss_pred             HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHHHHHHhh
Confidence            5899999999999999999999999999999  788888888 799999998642221111111888864

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PRK02224 chromosome segregation protein; Provisional

Probab=99.29  E-value=7.9e-12  Score=126.33  Aligned_cols=78  Identities=21%  Similarity=0.349  Sum_probs=68.1

Q ss_pred             CCCcCChhHHH------HHHHHHHHccC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHhhhC-C-CeEEEEeCCHHHH
Q psy7367         129 LANTLSGGMQR------KLSVAMAFIGG-----S-RTVILDEPTSGVDPYSRRSIWELLIKYKK-G-RTVILTTHYMDEA  194 (251)
Q Consensus       129 ~~~~LSgG~kq------rv~ia~al~~~-----p-~llllDEPt~gLD~~~~~~l~~~l~~l~~-g-~tiii~tHd~~~~  194 (251)
                      ++..||||||+      |+++|++++..     | +++||||||++||+..+..+.++|..+.. | .+||++|||.+.+
T Consensus       778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~  857 (880)
T PRK02224        778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV  857 (880)
T ss_pred             ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH
Confidence            46799999999      89999998863     2 67999999999999999999999999863 5 4899999999998


Q ss_pred             HhhcCEEEEeeCC
Q psy7367         195 DLLGDRIAIIAAG  207 (251)
Q Consensus       195 ~~~~d~i~~l~~G  207 (251)
                      . .||+++.|...
T Consensus       858 ~-~ad~~~~~~~~  869 (880)
T PRK02224        858 G-AADDLVRVEKD  869 (880)
T ss_pred             H-hcCeeEEeecC
Confidence            5 69999999744

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=99.27  E-value=7.9e-14  Score=132.21  Aligned_cols=160  Identities=19%  Similarity=0.249  Sum_probs=106.1

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHH--hCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHH
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISML--MGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ  100 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l--~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~  100 (251)
                      -+++|.++.|.||+|||||||..-+  .|+.++.+.-+++...+-.....+..+.+||-+++..--      +++.+   
T Consensus        17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~------g~l~~---   87 (484)
T TIGR02655        17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDE------GKLFI---   87 (484)
T ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhc------CceEE---
Confidence            5899999999999999999998866  566655555666655432111222234556555432100      00000   


Q ss_pred             hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHH--HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q psy7367         101 LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVA--MAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY  178 (251)
Q Consensus       101 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia--~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l  178 (251)
                      + .....   .....+++.+++.+..++.+..+|+|++|||.|+  .+|...|+..          +..++.++++++.+
T Consensus        88 ~-~~~~~---~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L  153 (484)
T TIGR02655        88 L-DASPD---PEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARL  153 (484)
T ss_pred             E-ecCch---hccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHH
Confidence            0 00000   0111245566777777888899999999999999  6666665544          57788899999888


Q ss_pred             h-CCCeEEEEeCCHHH---------HHhhcCEEEEee
Q psy7367         179 K-KGRTVILTTHYMDE---------ADLLGDRIAIIA  205 (251)
Q Consensus       179 ~-~g~tiii~tHd~~~---------~~~~~d~i~~l~  205 (251)
                      + .|+|+|++||+.+.         .+.+||.|+.|+
T Consensus       154 ~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~  190 (484)
T TIGR02655       154 KQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR  190 (484)
T ss_pred             HHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence            6 59999999998764         266899999987

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=99.27  E-value=5.5e-11  Score=102.32  Aligned_cols=160  Identities=13%  Similarity=0.059  Sum_probs=93.0

Q ss_pred             ceeeee-eEEEeCCcEEEEEcCCCCcHHHHHHHHh-CCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367          15 LAVNGL-NVNFYEDQITSFLGHNGAGKTTTISMLM-GMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE   92 (251)
Q Consensus        15 ~il~~i-sl~i~~Ge~~~liG~NGaGKSTLlk~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~   92 (251)
                      .-|+.+ .=-+++|.++.|.|++|||||||...++ +..+ ..+.+.                  |+..+      -+..
T Consensus        12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~------------------y~~~e------~~~~   66 (234)
T PRK06067         12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVY------------------VITTE------NTSK   66 (234)
T ss_pred             HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEE------------------EEEcC------CCHH
Confidence            344443 3368999999999999999999998875 2222 222333                  33221      1222


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHcc--CCCEEEEeCCCCC---CCHHH
Q psy7367          93 EHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIG--GSRTVILDEPTSG---VDPYS  167 (251)
Q Consensus        93 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~--~p~llllDEPt~g---LD~~~  167 (251)
                      +.+.-...+ +....+.  .....+..+.+   .-......|.++.+.+..+..++.  +|+++++||||+.   .|...
T Consensus        67 ~~~~~~~~~-g~~~~~~--~~~g~l~i~~~---~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~  140 (234)
T PRK06067         67 SYLKQMESV-KIDISDF--FLWGYLRIFPL---NTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDD  140 (234)
T ss_pred             HHHHHHHHC-CCChhHH--HhCCCceEEec---cccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHH
Confidence            222111111 1111000  00000001111   111234557788999999999987  9999999999964   55555


Q ss_pred             HHHHHHHHHhhh-CCCeEEEEeCCHHH-------HHhhcCEEEEee
Q psy7367         168 RRSIWELLIKYK-KGRTVILTTHYMDE-------ADLLGDRIAIIA  205 (251)
Q Consensus       168 ~~~l~~~l~~l~-~g~tiii~tHd~~~-------~~~~~d~i~~l~  205 (251)
                      ...+++.++.++ +|.|+++++|+...       +..++|-++.|+
T Consensus       141 ~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~  186 (234)
T PRK06067        141 ILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLR  186 (234)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence            556666666654 58999999998654       455566666665

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=99.24  E-value=2.1e-12  Score=110.66  Aligned_cols=165  Identities=17%  Similarity=0.176  Sum_probs=85.9

Q ss_pred             eeeee-eEEEeCCcEEEEEcCCCCcHHHHHHHHh--CCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367          16 AVNGL-NVNFYEDQITSFLGHNGAGKTTTISMLM--GMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE   92 (251)
Q Consensus        16 il~~i-sl~i~~Ge~~~liG~NGaGKSTLlk~l~--Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~   92 (251)
                      -|+.+ .=-+++|+++.|.||+|||||||...++  ++ .+..+-+++.............+.+++.+|+......+.+.
T Consensus         8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~~~~l~i~   86 (229)
T TIGR03881         8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGL-RDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIEEGKLVII   86 (229)
T ss_pred             hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhhcCCEEEE
Confidence            34443 3468999999999999999999988654  44 44555667765432111112234566666643222222222


Q ss_pred             HHHHH----HHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q psy7367          93 EHMWF----YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR  168 (251)
Q Consensus        93 e~l~~----~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~  168 (251)
                      |.+..    .........++...++.++++..+...                   .++++-.+..+++|||.     ..+
T Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------------------~~vvIDsl~~l~~~~~~-----~~r  142 (229)
T TIGR03881        87 DALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGH-------------------ARLVIDSMSAFWLDKPA-----MAR  142 (229)
T ss_pred             EccccccccccccccCCHHHHHHHHHHHHHhhccCc-------------------eEEEecCchhhhccChH-----HHH
Confidence            21100    000011223333334444444333211                   23344444445555553     223


Q ss_pred             HHHHHHHHhhh-CCCeEEEEeCCHH--------HHHhhcCEEEEee
Q psy7367         169 RSIWELLIKYK-KGRTVILTTHYMD--------EADLLGDRIAIIA  205 (251)
Q Consensus       169 ~~l~~~l~~l~-~g~tiii~tHd~~--------~~~~~~d~i~~l~  205 (251)
                      +.+..+.+.++ .|+|+|+++|...        .++.+||-|+.|+
T Consensus       143 ~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~  188 (229)
T TIGR03881       143 KYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR  188 (229)
T ss_pred             HHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence            33344444455 4999999999643        3556788888887

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=99.24  E-value=7.1e-12  Score=105.06  Aligned_cols=114  Identities=18%  Similarity=0.120  Sum_probs=71.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHH
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDL  108 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~  108 (251)
                      ++||.||||||||||.++|++++  ..|.+.+.+                  ++.. +..++..+........+..+...
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~------------------~D~~-~~~~~~~~~~~~~~~~~~~~~~~   59 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIIS------------------QDSY-YKDLSHEELEERKNNNYDHPDAF   59 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEE------------------eccc-ccccccccHHHhccCCCCCCCcc
Confidence            58999999999999999999987  233343332                  2211 11122222221111111111111


Q ss_pred             HHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q psy7367         109 AQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY  166 (251)
Q Consensus       109 ~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~  166 (251)
                      ..+.+.+.+..+......+.+..++|.|++++..+   .+.+|+++|+|+|+.+.++.
T Consensus        60 ~~~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~  114 (198)
T cd02023          60 DFDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE  114 (198)
T ss_pred             cHHHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence            12344556666666666777888999999877655   57889999999999999873

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=99.20  E-value=7.1e-11  Score=99.41  Aligned_cols=119  Identities=18%  Similarity=0.213  Sum_probs=74.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCC-CeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChH
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGMLPV-SSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD  107 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~  107 (251)
                      ++.|.||+||||||+++.|.+.+.+ ..|.|.....++....   ....+++.|..                        
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~---~~~~~~i~q~~------------------------   55 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVH---ESKRSLINQRE------------------------   55 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccc---cCccceeeecc------------------------
Confidence            7899999999999999998887764 3567665444331100   00111111110                        


Q ss_pred             HHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEE
Q psy7367         108 LAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILT  187 (251)
Q Consensus       108 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~  187 (251)
                                  ++..      ...++      -+++++|..+|+++++|||.   |++....   .++....|..++.+
T Consensus        56 ------------vg~~------~~~~~------~~i~~aLr~~pd~ii~gEir---d~e~~~~---~l~~a~~G~~v~~t  105 (198)
T cd01131          56 ------------VGLD------TLSFE------NALKAALRQDPDVILVGEMR---DLETIRL---ALTAAETGHLVMST  105 (198)
T ss_pred             ------------cCCC------ccCHH------HHHHHHhcCCcCEEEEcCCC---CHHHHHH---HHHHHHcCCEEEEE
Confidence                        0000      00111      14789999999999999996   6554333   33333458899999


Q ss_pred             eCCHHHHHhhcCEEEEee
Q psy7367         188 THYMDEADLLGDRIAIIA  205 (251)
Q Consensus       188 tHd~~~~~~~~d~i~~l~  205 (251)
                      +|..+... ..+|++.+.
T Consensus       106 ~Ha~~~~~-~~~Rl~~l~  122 (198)
T cd01131         106 LHTNSAAK-TIDRIIDVF  122 (198)
T ss_pred             ecCCcHHH-HHhHHHhhc
Confidence            99988764 578887664

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=99.19  E-value=1.7e-09  Score=82.95  Aligned_cols=117  Identities=28%  Similarity=0.242  Sum_probs=80.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCCCCCe-eEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGMLPVSS-GTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV  104 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~-G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~  104 (251)
                      ++..+.|+||+|+||||+++.++..+.... +-++++.............                              
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------   50 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------   50 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence            367899999999999999999999887654 4444444332111000000                              


Q ss_pred             ChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH------HHhh
Q psy7367         105 PKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL------LIKY  178 (251)
Q Consensus       105 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~------l~~l  178 (251)
                                        ...........++.+..+..+++|--.+|.++++||+..-.+..........      ....
T Consensus        51 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~  112 (148)
T smart00382       51 ------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLK  112 (148)
T ss_pred             ------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHH
Confidence                              1112223456777778888888888888999999999999999988877651      2222


Q ss_pred             -hCCCeEEEEeCC
Q psy7367         179 -KKGRTVILTTHY  190 (251)
Q Consensus       179 -~~g~tiii~tHd  190 (251)
                       ..+..+|.++|.
T Consensus       113 ~~~~~~~i~~~~~  125 (148)
T smart00382      113 SEKNLTVILTTND  125 (148)
T ss_pred             hcCCCEEEEEeCC
Confidence             347889999984

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=99.16  E-value=4.3e-11  Score=99.68  Aligned_cols=84  Identities=13%  Similarity=0.097  Sum_probs=63.2

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCC--CCCCCCCHHH
Q psy7367          16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYN--ALFDKLTVEE   93 (251)
Q Consensus        16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~--~l~~~ltv~e   93 (251)
                      ...-+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.+..-...  ..+..+++++|..  ..++..++.+
T Consensus        14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   91 (186)
T cd01130          14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQL--PHPNWVRLVTRPGNVEGSGEVTMAD   91 (186)
T ss_pred             HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCC--CCCCEEEEEEecCCCCCCCccCHHH
Confidence            44556778999999999999999999999999999999999999976432111  1123466666543  4466789999


Q ss_pred             HHHHHHHh
Q psy7367          94 HMWFYSQL  101 (251)
Q Consensus        94 ~l~~~~~~  101 (251)
                      .+....+.
T Consensus        92 ~l~~~lR~   99 (186)
T cd01130          92 LLRSALRM   99 (186)
T ss_pred             HHHHHhcc
Confidence            88876654

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=99.14  E-value=5.5e-11  Score=110.58  Aligned_cols=89  Identities=13%  Similarity=0.194  Sum_probs=69.9

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCee---EEEEcceeCCCCh-H------HhhcceEEEccC
Q psy7367          13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG---TAKIYNHDIRTDM-T------TIRRSLGVCPQY   82 (251)
Q Consensus        13 ~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G---~i~~~g~~~~~~~-~------~~~~~i~~v~q~   82 (251)
                      +..+++++ |++.+|++++|+|+||||||||+++|+|+.+|+.+   .|-.++.++.... .      ..+..+++++|+
T Consensus       142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d  220 (434)
T PRK07196        142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD  220 (434)
T ss_pred             ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence            35799999 99999999999999999999999999999998864   3333443432111 1      124579999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhc
Q psy7367          83 NALFDKLTVEEHMWFYSQLK  102 (251)
Q Consensus        83 ~~l~~~ltv~e~l~~~~~~~  102 (251)
                      ...+..+++.+++.+.+.++
T Consensus       221 ~s~~~rl~a~e~a~~iAEyf  240 (434)
T PRK07196        221 ESPLMRIKATELCHAIATYY  240 (434)
T ss_pred             CChhhhHHHHHHHHHHHHHh
Confidence            99999999999998776654

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=99.13  E-value=1.3e-10  Score=108.24  Aligned_cols=83  Identities=13%  Similarity=0.265  Sum_probs=67.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcc---eeCCCC----h-HHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN---HDIRTD----M-TTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g---~~~~~~----~-~~~   72 (251)
                      ++.+++++.|..+..+++.++ +|.+|++++|+||||||||||+++|+++.+|+.|.|.+.|   +++...    . ...
T Consensus       140 ~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~~r  218 (450)
T PRK06002        140 MTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLADNL  218 (450)
T ss_pred             eEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHHhh
Confidence            356789999966678999986 9999999999999999999999999999999999998864   444311    1 122


Q ss_pred             hcceEEEccCCC
Q psy7367          73 RRSLGVCPQYNA   84 (251)
Q Consensus        73 ~~~i~~v~q~~~   84 (251)
                      ++.|+|++|...
T Consensus       219 ~rtI~vV~qsd~  230 (450)
T PRK06002        219 KKAVAVVATSDE  230 (450)
T ss_pred             CCeEEEEEcCCC
Confidence            468999999653

>TIGR00611 recf recF protein

Probab=99.12  E-value=1.5e-10  Score=106.18  Aligned_cols=63  Identities=29%  Similarity=0.371  Sum_probs=58.2

Q ss_pred             CcCChhHHHHHHHHHHHcc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHH
Q psy7367         131 NTLSGGMQRKLSVAMAFIG---------GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEAD  195 (251)
Q Consensus       131 ~~LSgG~kqrv~ia~al~~---------~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~  195 (251)
                      ..+|.||+|+++||.+|+.         +|+++|||||+++||+..++.+++.|.+.  |..|+++||+++.+.
T Consensus       274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~  345 (365)
T TIGR00611       274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK  345 (365)
T ss_pred             HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence            4789999999999999999         99999999999999999999999999765  679999999987765

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=99.09  E-value=5.7e-10  Score=96.38  Aligned_cols=46  Identities=20%  Similarity=0.312  Sum_probs=38.8

Q ss_pred             HHccCCCEEEEeCCCCC------CCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHH
Q psy7367         146 AFIGGSRTVILDEPTSG------VDPYSRRSIWELLIKYK-K-GRTVILTTHYMD  192 (251)
Q Consensus       146 al~~~p~llllDEPt~g------LD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~  192 (251)
                      +...+|+++++| |+++      +|+.....+++.|.++. + |++||+++|...
T Consensus       107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K  160 (239)
T cd01125         107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK  160 (239)
T ss_pred             HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence            346899999999 7754      79999999999998874 3 999999999864

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=99.08  E-value=3.9e-09  Score=106.47  Aligned_cols=54  Identities=26%  Similarity=0.310  Sum_probs=49.3

Q ss_pred             HHHHHccCCCEEEEeCCCCCC-CHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHh
Q psy7367         143 VAMAFIGGSRTVILDEPTSGV-DPYSRRSIWELLIKYK-KGRTVILTTHYMDEADL  196 (251)
Q Consensus       143 ia~al~~~p~llllDEPt~gL-D~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~  196 (251)
                      |++++..+|.++++|||+.+| |+..++.+.+.++.++ .|.+++++||+++.+..
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~  735 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN  735 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence            677889999999999999999 7999999999999985 58999999999998875

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=99.08  E-value=3.2e-09  Score=99.41  Aligned_cols=174  Identities=21%  Similarity=0.262  Sum_probs=110.0

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC---ChH------HhhcceEEEccCC
Q psy7367          13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT---DMT------TIRRSLGVCPQYN   83 (251)
Q Consensus        13 ~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~---~~~------~~~~~i~~v~q~~   83 (251)
                      +..+++++ |.+.+|+.++|+|+||+|||||+++|++..+|+.|.+...|+.-..   ...      .+++.+.++.+..
T Consensus       150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d  228 (440)
T TIGR01026       150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSD  228 (440)
T ss_pred             eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCC
Confidence            45789999 9999999999999999999999999999999999988776654321   010      1122333333321


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHH--ccCCCEEEEeCC--
Q psy7367          84 ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF--IGGSRTVILDEP--  159 (251)
Q Consensus        84 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al--~~~p~llllDEP--  159 (251)
                      .     ++.+-..-..         ..-.+.+.+...|-+-+.  -..+|+-       .|+|+  +.    +.+.||  
T Consensus       229 ~-----~p~~r~~~~~---------~a~t~AE~frd~G~~Vll--~~DslTr-------~A~A~REis----l~~ge~P~  281 (440)
T TIGR01026       229 Q-----SPLLRLKGAY---------VATAIAEYFRDQGKDVLL--LMDSVTR-------FAMAQREIG----LAAGEPPA  281 (440)
T ss_pred             C-----CHHHHHHHHH---------HHHHHHHHHHHCCCCEEE--EEeChHH-------HHHHHHHHH----HhcCCCCc
Confidence            1     1111111000         001122223233432111  1222321       22221  11    345675  


Q ss_pred             CCCCCHHHHHHHHHHHHhhh-CCC-------eEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHH
Q psy7367         160 TSGVDPYSRRSIWELLIKYK-KGR-------TVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  216 (251)
Q Consensus       160 t~gLD~~~~~~l~~~l~~l~-~g~-------tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~  216 (251)
                      +.|+||.....+.+++.+.. .+.       ||++.+||+.  ..+||++..+.+|+++.+.+..
T Consensus       282 ~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~--dpi~d~~~~i~dG~ivLsr~la  344 (440)
T TIGR01026       282 TKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN--EPIADSVRGILDGHIVLSRALA  344 (440)
T ss_pred             ccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC--cchhhhhccccceEEEEecchh
Confidence            45999999999999998874 356       8999999984  5689999999999999887654

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>PRK06315 type III secretion system ATPase; Provisional

Probab=99.02  E-value=5.7e-10  Score=104.10  Aligned_cols=165  Identities=15%  Similarity=0.179  Sum_probs=104.3

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CeeEEEEcc---eeCCC-ChHHh---hcceEEE-----c
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-SSGTAKIYN---HDIRT-DMTTI---RRSLGVC-----P   80 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-~~G~i~~~g---~~~~~-~~~~~---~~~i~~v-----~   80 (251)
                      ..+++++ |++.+|+.++|+|+||+|||||+++|+|+.++ +.|.|.+.|   +++.. ....+   ..+.+++     +
T Consensus       152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~  230 (442)
T PRK06315        152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD  230 (442)
T ss_pred             EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence            4588887 99999999999999999999999999998854 446676644   44421 11111   1234555     8


Q ss_pred             cCC--CCCCCCCHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHcCCC-----cccCCCCCcCChhHHHHHHHHHHHccC
Q psy7367          81 QYN--ALFDKLTVEEHMWFYSQLKQVP---KDLAQLEISNMIVDLGIP-----HKRTSLANTLSGGMQRKLSVAMAFIGG  150 (251)
Q Consensus        81 q~~--~l~~~ltv~e~l~~~~~~~~~~---~~~~~~~~~~~l~~~~l~-----~~~~~~~~~LSgG~kqrv~ia~al~~~  150 (251)
                      |++  .+.+.+ +...++-+.+.++..   ..+...++.++++.+++.     .....+|+.||.       +++-+   
T Consensus       231 q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~-------l~~ll---  299 (442)
T PRK06315        231 QSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFST-------LPKLL---  299 (442)
T ss_pred             CCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhH-------hHHHH---
Confidence            876  333333 444444444433322   245567888999999983     455667777663       22211   


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHhhhCC-----CeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367         151 SRTVILDEPTSGVDPYSRRSIWELLIKYKKG-----RTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  214 (251)
Q Consensus       151 p~llllDEPt~gLD~~~~~~l~~~l~~l~~g-----~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~  214 (251)
                                            +-.-....|     -||++..+|+++.  ++|.+.-+-+|.|+.+-.
T Consensus       300 ----------------------ERag~~~~GSITai~tVl~~gdD~~dp--i~d~~~~i~dg~ivLsr~  344 (442)
T PRK06315        300 ----------------------ERSGASDKGTITAFYTVLVAGDDMNEP--VADEVKSILDGHIVLSNA  344 (442)
T ss_pred             ----------------------HHhcCCCCcceeeeEEEEecCCCCCcc--cHHHhhhhcceEEEEecc
Confidence                                  000000123     2666777777654  678888888898887644

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.00  E-value=3.4e-10  Score=93.66  Aligned_cols=69  Identities=14%  Similarity=0.136  Sum_probs=50.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHH
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFY   98 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~   98 (251)
                      +||+++|+|+||||||||+++|++++.|    +.++|.++.......+...++.+|+...++..++..++.+.
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~   70 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS   70 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence            6999999999999999999999999887    58888887542222222456777765555566677776653

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.98  E-value=1.9e-09  Score=109.51  Aligned_cols=79  Identities=25%  Similarity=0.322  Sum_probs=68.4

Q ss_pred             CCCCCcCChhHHHHHHHHHHH------ccC--CCEEEEeCCCCCCCHHHHHHHHHHHHhhhC-CCeEEEEeCCHHHHHhh
Q psy7367         127 TSLANTLSGGMQRKLSVAMAF------IGG--SRTVILDEPTSGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADLL  197 (251)
Q Consensus       127 ~~~~~~LSgG~kqrv~ia~al------~~~--p~llllDEPt~gLD~~~~~~l~~~l~~l~~-g~tiii~tHd~~~~~~~  197 (251)
                      -+++..|||||+-.++||.+|      ..+  -++++|||||..||+..++.++++|..+.. +.+|+||||+-++.+ .
T Consensus       810 ~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e-~  888 (908)
T COG0419         810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKE-R  888 (908)
T ss_pred             ccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHH-h
Confidence            368899999999988887766      345  699999999999999999999999999864 899999999987775 5


Q ss_pred             cCEEEEeeC
Q psy7367         198 GDRIAIIAA  206 (251)
Q Consensus       198 ~d~i~~l~~  206 (251)
                      +|+++.++.
T Consensus       889 ~~~~i~V~k  897 (908)
T COG0419         889 ADVRIRVKK  897 (908)
T ss_pred             CCeEEEEEe
Confidence            788887764

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=98.96  E-value=5.6e-09  Score=105.19  Aligned_cols=135  Identities=24%  Similarity=0.332  Sum_probs=84.0

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC-CCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHH
Q psy7367          15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML-PVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEE   93 (251)
Q Consensus        15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e   93 (251)
                      .+-+|+++. +.+.++.|.|||.+||||+||.++-.. -..-|                    .|||-...   .+++.+
T Consensus       596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G--------------------~~VPa~~a---~i~~~d  651 (854)
T PRK05399        596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIG--------------------SFVPAESA---RIGIVD  651 (854)
T ss_pred             eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcC--------------------Cceeccce---EecccC
Confidence            455677777 667899999999999999999987431 11111                    12222211   011111


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHcc--CCCEEEEeCC---CCCCCHHHH
Q psy7367          94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIG--GSRTVILDEP---TSGVDPYSR  168 (251)
Q Consensus        94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~--~p~llllDEP---t~gLD~~~~  168 (251)
                      .+                     +.++|-.   +.....+|.=+.....++.+|-.  ++.++|+|||   |+.+|..+ 
T Consensus       652 ~I---------------------~triga~---d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a-  706 (854)
T PRK05399        652 RI---------------------FTRIGAS---DDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS-  706 (854)
T ss_pred             ee---------------------eeccCcc---cccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH-
Confidence            11                     0011211   11234566666677777777654  9999999999   99999443 


Q ss_pred             HHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCE
Q psy7367         169 RSIWELLIKYK-K-GRTVILTTHYMDEADLLGDR  200 (251)
Q Consensus       169 ~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~  200 (251)
                       ..+.++..+. . +.++|++||+ .++..++++
T Consensus       707 -ia~aile~l~~~~~~~~l~aTH~-~el~~l~~~  738 (854)
T PRK05399        707 -IAWAVAEYLHDKIGAKTLFATHY-HELTELEEK  738 (854)
T ss_pred             -HHHHHHHHHHhcCCceEEEEech-HHHHHHhhh
Confidence             4566666664 3 5899999999 455567765

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=98.96  E-value=3.3e-08  Score=99.31  Aligned_cols=51  Identities=24%  Similarity=0.311  Sum_probs=44.8

Q ss_pred             HHccCCCEEEEeCCCCCCC-HHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHh
Q psy7367         146 AFIGGSRTVILDEPTSGVD-PYSRRSIWELLIKYK-KGRTVILTTHYMDEADL  196 (251)
Q Consensus       146 al~~~p~llllDEPt~gLD-~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~  196 (251)
                      .+..+|.++++|||...|| +..++.+.+.++..+ .|..++++||+++.+..
T Consensus       638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~  690 (800)
T PRK13898        638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASK  690 (800)
T ss_pred             HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHh
Confidence            4567999999999999999 899999999999985 58999999999977553

>PLN03210 Resistant to P

Probab=98.96  E-value=3.9e-09  Score=109.73  Aligned_cols=144  Identities=18%  Similarity=0.151  Sum_probs=84.0

Q ss_pred             eeEEEeCCcEEEEEcCCCCcHHHHHHHHhCC-CCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHH
Q psy7367          20 LNVNFYEDQITSFLGHNGAGKTTTISMLMGM-LPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFY   98 (251)
Q Consensus        20 isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~   98 (251)
                      ++++.++++++||+|++|+|||||++.+.+- ....+|.+++++..+.....      .+-.+.+.-       .+....
T Consensus       200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~------~~~~~~~~~-------~~~~~~  266 (1153)
T PLN03210        200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSME------IYSSANPDD-------YNMKLH  266 (1153)
T ss_pred             HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchh------hcccccccc-------cchhHH
Confidence            4677889999999999999999999999554 45568999887533211100      000111110       011110


Q ss_pred             HHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q psy7367          99 SQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY  178 (251)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l  178 (251)
                      .         ..+.+.++++..++.      +..+ ++.++|      |..++-+++||+-    |..   ..++.+...
T Consensus       267 l---------~~~~l~~il~~~~~~------~~~~-~~~~~~------L~~krvLLVLDdv----~~~---~~l~~L~~~  317 (1153)
T PLN03210        267 L---------QRAFLSEILDKKDIK------IYHL-GAMEER------LKHRKVLIFIDDL----DDQ---DVLDALAGQ  317 (1153)
T ss_pred             H---------HHHHHHHHhCCCCcc------cCCH-HHHHHH------HhCCeEEEEEeCC----CCH---HHHHHHHhh
Confidence            0         112233444444431      2222 455555      4466778888983    332   334444432


Q ss_pred             ----hCCCeEEEEeCCHHHHHhh-cCEEEEee
Q psy7367         179 ----KKGRTVILTTHYMDEADLL-GDRIAIIA  205 (251)
Q Consensus       179 ----~~g~tiii~tHd~~~~~~~-~d~i~~l~  205 (251)
                          ..|.+||++|||...+... +|+++.+.
T Consensus       318 ~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~  349 (1153)
T PLN03210        318 TQWFGSGSRIIVITKDKHFLRAHGIDHIYEVC  349 (1153)
T ss_pred             CccCCCCcEEEEEeCcHHHHHhcCCCeEEEec
Confidence                2489999999999998765 67776653

syringae 6; Provisional

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.95  E-value=1.4e-09  Score=114.07  Aligned_cols=64  Identities=27%  Similarity=0.333  Sum_probs=56.4

Q ss_pred             cCCCCCcCChhHHHHHH----HHHH--------HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCH
Q psy7367         126 RTSLANTLSGGMQRKLS----VAMA--------FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYM  191 (251)
Q Consensus       126 ~~~~~~~LSgG~kqrv~----ia~a--------l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~  191 (251)
                      .++.++.|||||||+++    +|++        +..+|++++|||||+|||+.++..+++++.++  +.++||+||.+
T Consensus      1241 ~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~ 1316 (1353)
T TIGR02680      1241 LTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSERE 1316 (1353)
T ss_pred             hhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccch
Confidence            34567999999999996    5655        55899999999999999999999999999988  68899999975

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PRK14079 recF recombination protein F; Provisional

Probab=98.92  E-value=2.5e-09  Score=97.58  Aligned_cols=78  Identities=21%  Similarity=0.272  Sum_probs=63.8

Q ss_pred             CcCChhHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEE
Q psy7367         131 NTLSGGMQRKLSVAMAFI---------GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRI  201 (251)
Q Consensus       131 ~~LSgG~kqrv~ia~al~---------~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i  201 (251)
                      ..+|+||++++++|..|+         .+|+++|||||+++||+..+..+++.|....  .++|-+|+    ....||++
T Consensus       262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~--q~~it~t~----~~~~~~~~  335 (349)
T PRK14079        262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP--QAIVAGTE----APPGAALT  335 (349)
T ss_pred             HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC--cEEEEcCC----CCCCCceE
Confidence            478999999999999999         8999999999999999999999999886543  23333332    34578999


Q ss_pred             EEeeCCEEEeecC
Q psy7367         202 AIIAAGKLQCCGS  214 (251)
Q Consensus       202 ~~l~~G~i~~~g~  214 (251)
                      +.+.+|++.-+.+
T Consensus       336 ~~~~~~~~~~~~~  348 (349)
T PRK14079        336 LRIEAGVFTPEAP  348 (349)
T ss_pred             EEEeccEecCCCC
Confidence            9999998865443

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.90  E-value=8.5e-09  Score=100.55  Aligned_cols=110  Identities=20%  Similarity=0.286  Sum_probs=76.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeE--------EEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHH
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGMLPVSSGT--------AKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWF   97 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~--------i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~   97 (251)
                      ..+.+.|+||||+|||||++++.++.++..|+        +.+++..+.......                    .+-.+
T Consensus       174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i--------------------~~~ll  233 (615)
T TIGR02903       174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREV--------------------TNPLL  233 (615)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHH--------------------hHHhc
Confidence            34679999999999999999999988655443        555544331110000                    11111


Q ss_pred             HHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q psy7367          98 YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK  177 (251)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~  177 (251)
                      .     ...+.....+...++.+|+.......+.++|||                +|+||| +..||+..+..+++.+.+
T Consensus       234 g-----~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~  291 (615)
T TIGR02903       234 G-----SVHDPIYQGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED  291 (615)
T ss_pred             C-----CccHHHHHHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence            1     011112233555688889988888899999999                999999 799999999999999975

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.88  E-value=5.8e-09  Score=83.10  Aligned_cols=140  Identities=18%  Similarity=0.113  Sum_probs=76.4

Q ss_pred             EEEEcCCCCcHHHHHHHHh--CCCCCCeeEEEEcceeCCCChHHhhcceEEEc-cCCCCCC-----------------CC
Q psy7367          30 TSFLGHNGAGKTTTISMLM--GMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP-QYNALFD-----------------KL   89 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~--Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~-q~~~l~~-----------------~l   89 (251)
                      ++|+|++|||||||++.|+  +..++.+|++... .....  .....  .+.+ +-|.+..                 .+
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t-~~~~~--~~~~~--~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~   76 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKT-QLINF--FNVND--KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL   76 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcc-eeEEE--EEccC--eEEEecCCCccccccCHHHHHHHHHHHHHHH
Confidence            6899999999999999999  6766666654221 11000  00000  1111 1121110                 00


Q ss_pred             CHHHHHHHHHHh--cCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHH-----ccCCCEEEEeCCCC
Q psy7367          90 TVEEHMWFYSQL--KQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAF-----IGGSRTVILDEPTS  161 (251)
Q Consensus        90 tv~e~l~~~~~~--~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al-----~~~p~llllDEPt~  161 (251)
                      +..+++.....+  ...........+..++..++.. -....+...+|.+++++.......     ...|+++    |+|
T Consensus        77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~S  152 (170)
T cd01876          77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFS  152 (170)
T ss_pred             HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEe
Confidence            111111111011  1111112333455667776644 223345777899988877665542     3456665    999


Q ss_pred             CCCHHHHHHHHHHHHhh
Q psy7367         162 GVDPYSRRSIWELLIKY  178 (251)
Q Consensus       162 gLD~~~~~~l~~~l~~l  178 (251)
                      ++|.....++++.|.++
T Consensus       153 a~~~~~~~~l~~~l~~~  169 (170)
T cd01876         153 SLKGQGIDELRALIEKW  169 (170)
T ss_pred             cCCCCCHHHHHHHHHHh
Confidence            99999999999988764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.83  E-value=4.4e-08  Score=89.23  Aligned_cols=122  Identities=20%  Similarity=0.212  Sum_probs=74.7

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCCC-CCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGMLP-VSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ  103 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~  103 (251)
                      .++.++.|.||+||||||+++++.+.+. +..+.|.....++...   ......++.|..                    
T Consensus       120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~---~~~~~~~i~q~e--------------------  176 (343)
T TIGR01420       120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV---HRNKRSLINQRE--------------------  176 (343)
T ss_pred             hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh---ccCccceEEccc--------------------
Confidence            4678999999999999999999998665 4466666544332110   000001111100                    


Q ss_pred             CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCe
Q psy7367         104 VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRT  183 (251)
Q Consensus       104 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~t  183 (251)
                                      .+..        ..+    -.-++++||-++|+++++||+.   |+.+....++   ....|.+
T Consensus       177 ----------------vg~~--------~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~---aa~tGh~  222 (343)
T TIGR01420       177 ----------------VGLD--------TLS----FANALRAALREDPDVILIGEMR---DLETVELALT---AAETGHL  222 (343)
T ss_pred             ----------------cCCC--------CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH---HHHcCCc
Confidence                            0100        000    1134677889999999999997   8877754443   3345899


Q ss_pred             EEEEeCCHHHHHhhcCEEEEe
Q psy7367         184 VILTTHYMDEADLLGDRIAII  204 (251)
Q Consensus       184 iii~tHd~~~~~~~~d~i~~l  204 (251)
                      |+.+.|..+... ..+|+.-|
T Consensus       223 v~~T~Ha~~~~~-~~~Rl~~~  242 (343)
T TIGR01420       223 VFGTLHTNSAAQ-TIERIIDV  242 (343)
T ss_pred             EEEEEcCCCHHH-HHHHHHHh
Confidence            999999865543 34555433

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.83  E-value=3.7e-09  Score=93.89  Aligned_cols=75  Identities=19%  Similarity=0.232  Sum_probs=55.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhCCCC--CCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMGMLP--VSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK  102 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~  102 (251)
                      -.++||.||||||||||+++|.+++.  |++|+|.+-+.|--......++..+++ |...+++.+++.+.+.+...++
T Consensus        62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk  138 (290)
T TIGR00554        62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK  138 (290)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence            36999999999999999999999987  788988776655422222233445654 7777777888988888765553

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.83  E-value=7.2e-09  Score=87.06  Aligned_cols=28  Identities=29%  Similarity=0.436  Sum_probs=26.2

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      ++|++++|+||+|||||||+++|++.++
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            5899999999999999999999999874

>TIGR00416 sms DNA repair protein RadA

Probab=98.82  E-value=1e-08  Score=96.59  Aligned_cols=138  Identities=12%  Similarity=0.126  Sum_probs=80.3

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEE-EEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHh
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA-KIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL  101 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~  101 (251)
                      -+.+|+++.|.|++|+|||||+..++.......+.+ ++.+++.........+++++.+++..++..             
T Consensus        90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e-------------  156 (454)
T TIGR00416        90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSE-------------  156 (454)
T ss_pred             CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCC-------------
Confidence            589999999999999999999999887655444444 555554211111111223322211111100             


Q ss_pred             cCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCC---------CHHHHHHHH
Q psy7367         102 KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGV---------DPYSRRSIW  172 (251)
Q Consensus       102 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gL---------D~~~~~~l~  172 (251)
                                                     .+-  -+-...+  --.+|+++++|.-++-.         +....+.+.
T Consensus       157 -------------------------------~~~--~~I~~~i--~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~  201 (454)
T TIGR00416       157 -------------------------------TNW--EQICANI--EEENPQACVIDSIQTLYSPDISSAPGSVSQVRECT  201 (454)
T ss_pred             -------------------------------CCH--HHHHHHH--HhcCCcEEEEecchhhcccccccCCCCHHHHHHHH
Confidence                                           000  0001111  12478999999865421         122344455


Q ss_pred             HHHHhh-h-CCCeEEEEeCCHHH--------HHhhcCEEEEeeCCE
Q psy7367         173 ELLIKY-K-KGRTVILTTHYMDE--------ADLLGDRIAIIAAGK  208 (251)
Q Consensus       173 ~~l~~l-~-~g~tiii~tHd~~~--------~~~~~d~i~~l~~G~  208 (251)
                      ..|.++ + .|.|+++++|...+        ++.++|.++.|+.++
T Consensus       202 ~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~  247 (454)
T TIGR00416       202 AELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR  247 (454)
T ss_pred             HHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence            555555 4 49999999997654        677899999998654

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>TIGR00235 udk uridine kinase

Probab=98.78  E-value=2.2e-09  Score=90.78  Aligned_cols=29  Identities=28%  Similarity=0.282  Sum_probs=27.2

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCCCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGMLPV   53 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p   53 (251)
                      ++|++++|+||||||||||++.|++++++
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~   32 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK   32 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            57999999999999999999999999875

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.77  E-value=2.7e-09  Score=88.40  Aligned_cols=63  Identities=17%  Similarity=0.215  Sum_probs=46.2

Q ss_pred             HHHHHHHHcCCC-cccCCCCCcCChhHHHHHH--HHHHHcc-CCCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q psy7367         112 EISNMIVDLGIP-HKRTSLANTLSGGMQRKLS--VAMAFIG-GSRTVILDEPTSGVDPYSRRSIWELLIKY  178 (251)
Q Consensus       112 ~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~--ia~al~~-~p~llllDEPt~gLD~~~~~~l~~~l~~l  178 (251)
                      .+.++++..++. -..-.++..+|+|++|++.  +++.+-. +++++    |+|++|..+.+.+++.|.++
T Consensus       126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~  192 (196)
T PRK00454        126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKW  192 (196)
T ss_pred             HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHH
Confidence            455566666765 3344577889999999877  5555543 34443    99999999999999999875

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.76  E-value=1e-08  Score=88.02  Aligned_cols=75  Identities=19%  Similarity=0.270  Sum_probs=52.9

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeE----EEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHH
Q psy7367          24 FYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT----AKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYS   99 (251)
Q Consensus        24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~----i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~   99 (251)
                      -.+..++||.||||||||||+++|++++++++|.    |.+++...  . ...+...+++++.. .+..+++.+.+.+..
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~--~-~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~  105 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHL--D-NAVLDAHGLRPRKG-APETFDVAGLAALLR  105 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccC--C-HHHHHhcccccccC-CCCCCCHHHHHHHHH
Confidence            3457899999999999999999999999999998    44444322  1 22334567777633 345667877776655


Q ss_pred             Hhc
Q psy7367         100 QLK  102 (251)
Q Consensus       100 ~~~  102 (251)
                      .++
T Consensus       106 ~l~  108 (229)
T PRK09270        106 RLR  108 (229)
T ss_pred             HHH
Confidence            443

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.74  E-value=7.3e-08  Score=74.62  Aligned_cols=54  Identities=17%  Similarity=0.081  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh------CCCeEEEEeCCHH
Q psy7367         138 QRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK------KGRTVILTTHYMD  192 (251)
Q Consensus       138 kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~------~g~tiii~tHd~~  192 (251)
                      .+......+...++.++++||.-.. ++.....+.+.+....      .+..+|+++++..
T Consensus        72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence            5556667777889999999998665 6667778888887763      4788999998754

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.73  E-value=1.2e-08  Score=95.09  Aligned_cols=61  Identities=20%  Similarity=0.267  Sum_probs=53.2

Q ss_pred             EEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEccee
Q psy7367           3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD   64 (251)
Q Consensus         3 i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~   64 (251)
                      .++++..|..+..+++++ |++.+|+.++|+|+||+|||||+++|+++.+|+.|.+.+.|+.
T Consensus       132 r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR  192 (433)
T PRK07594        132 RQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192 (433)
T ss_pred             ccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence            345666674457899999 9999999999999999999999999999999999988877764

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.73  E-value=1.5e-08  Score=84.26  Aligned_cols=54  Identities=13%  Similarity=0.169  Sum_probs=42.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-hHHhhcceEEEccCC
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MTTIRRSLGVCPQYN   83 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~   83 (251)
                      |++++|+||||||||||+++|++...|   .+.+.+..+... ....+..+++++|+.
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF   56 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence            789999999999999999999998876   577777776532 223345677888763

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=98.72  E-value=3e-08  Score=92.53  Aligned_cols=83  Identities=19%  Similarity=0.207  Sum_probs=62.0

Q ss_pred             EEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC---hHHh----hcceEEEc
Q psy7367           8 KRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD---MTTI----RRSLGVCP   80 (251)
Q Consensus         8 ~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~---~~~~----~~~i~~v~   80 (251)
                      ..+..+..+++++ |++.+|+.++|+|+||+|||||+++|+|...|+.|.+...|++-..-   ....    ....++++
T Consensus       127 ~~l~tG~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv  205 (422)
T TIGR02546       127 QPLPTGVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLV  205 (422)
T ss_pred             cccCCCceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceEEE
Confidence            3343446799999 99999999999999999999999999999999999998866543211   1111    13456778


Q ss_pred             cCCCCCCCCCH
Q psy7367          81 QYNALFDKLTV   91 (251)
Q Consensus        81 q~~~l~~~ltv   91 (251)
                      +....++.++.
T Consensus       206 ~~~s~~p~~~r  216 (422)
T TIGR02546       206 VSTSDRPSLER  216 (422)
T ss_pred             eccccCCHHHH
Confidence            87776665443

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.71  E-value=3.1e-08  Score=89.34  Aligned_cols=58  Identities=19%  Similarity=0.347  Sum_probs=50.3

Q ss_pred             EEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEccee
Q psy7367           6 LSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD   64 (251)
Q Consensus         6 l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~   64 (251)
                      ++..|..+..+++.+ +.+.+|++++|+|+||+|||||+++|+|...|+.|.+..-|++
T Consensus        49 ~~~~l~tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer  106 (326)
T cd01136          49 IDEVLPTGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER  106 (326)
T ss_pred             ceeEcCCCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence            344554456799999 9999999999999999999999999999999999988876654

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PRK08149 ATP synthase SpaL; Validated

Probab=98.71  E-value=2.6e-08  Score=92.67  Aligned_cols=71  Identities=18%  Similarity=0.225  Sum_probs=58.4

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCe---eEEEEcceeCCCChHH-----hhcceEEEccCCC
Q psy7367          13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSS---GTAKIYNHDIRTDMTT-----IRRSLGVCPQYNA   84 (251)
Q Consensus        13 ~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~---G~i~~~g~~~~~~~~~-----~~~~i~~v~q~~~   84 (251)
                      +..+++++ +++.+|++++|+|+||+|||||+++|++...++.   |.|..+|+++..-..+     ..+++++|+....
T Consensus       138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd  216 (428)
T PRK08149        138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSD  216 (428)
T ss_pred             CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCC
Confidence            35799999 9999999999999999999999999999999987   8999999887431111     2357888887553

>PRK01889 GTPase RsgA; Reviewed

Probab=98.70  E-value=3.1e-08  Score=90.68  Aligned_cols=78  Identities=23%  Similarity=0.297  Sum_probs=61.4

Q ss_pred             eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHH
Q psy7367          17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMW   96 (251)
Q Consensus        17 l~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~   96 (251)
                      ++.+.-.+++|++++|+|+||+|||||+++|+|...|..|+|.+++..-.  ....++.+++++|...+++ .++..++.
T Consensus       185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~--~tt~~~~l~~l~~~~~l~D-tpG~~~~~  261 (356)
T PRK01889        185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGR--HTTTHRELHPLPSGGLLID-TPGMRELQ  261 (356)
T ss_pred             HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCc--chhhhccEEEecCCCeecC-CCchhhhc
Confidence            55566678899999999999999999999999999999999999875421  1223567999999887775 35666655


Q ss_pred             H
Q psy7367          97 F   97 (251)
Q Consensus        97 ~   97 (251)
                      +
T Consensus       262 l  262 (356)
T PRK01889        262 L  262 (356)
T ss_pred             c
Confidence            4

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.68  E-value=2e-08  Score=95.39  Aligned_cols=61  Identities=25%  Similarity=0.335  Sum_probs=56.0

Q ss_pred             EeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeC
Q psy7367           4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI   65 (251)
Q Consensus         4 ~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~   65 (251)
                      .|+++.|+. ..+++++++.+..|+.++|+||||||||||++.|.|+++|.+|++.+....+
T Consensus       188 ~d~~~v~Gq-~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i  248 (506)
T PRK09862        188 HDLSDVIGQ-EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI  248 (506)
T ss_pred             cCeEEEECc-HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence            578888864 6799999999999999999999999999999999999999999999987665

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=98.67  E-value=7.6e-08  Score=88.51  Aligned_cols=137  Identities=14%  Similarity=0.201  Sum_probs=78.8

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEE-EcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHh
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK-IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL  101 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~-~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~  101 (251)
                      -+.+|+++.|.|++|+|||||+..++.......+.+. +.+++.........+++++..++..++...            
T Consensus        78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~------------  145 (372)
T cd01121          78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAET------------  145 (372)
T ss_pred             CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccC------------
Confidence            4889999999999999999999999887665555654 445432111111112333222211111100            


Q ss_pred             cCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC----CCCC-----HHHHHHHH
Q psy7367         102 KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT----SGVD-----PYSRRSIW  172 (251)
Q Consensus       102 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt----~gLD-----~~~~~~l~  172 (251)
                                .++++++                          ..--.+|+++++|+-.    ..+|     ....+.+.
T Consensus       146 ----------~le~I~~--------------------------~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~  189 (372)
T cd01121         146 ----------NLEDILA--------------------------SIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECT  189 (372)
T ss_pred             ----------cHHHHHH--------------------------HHHhcCCcEEEEcchHHhhccccccCCCCHHHHHHHH
Confidence                      0011111                          0112589999999953    2332     22333444


Q ss_pred             HHHHhh-h-CCCeEEEEeCCHH--------HHHhhcCEEEEeeCC
Q psy7367         173 ELLIKY-K-KGRTVILTTHYMD--------EADLLGDRIAIIAAG  207 (251)
Q Consensus       173 ~~l~~l-~-~g~tiii~tHd~~--------~~~~~~d~i~~l~~G  207 (251)
                      ..|.++ + .+.|++++.|-..        .++.++|.++.++..
T Consensus       190 ~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~  234 (372)
T cd01121         190 AELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD  234 (372)
T ss_pred             HHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcC
Confidence            445554 3 3899999999433        367889999988754

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.67  E-value=2.3e-08  Score=90.16  Aligned_cols=73  Identities=19%  Similarity=0.096  Sum_probs=56.8

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-----h--HHhhcceEEEccCCCCCCCCCHHHHHHH
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-----M--TTIRRSLGVCPQYNALFDKLTVEEHMWF   97 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-----~--~~~~~~i~~v~q~~~l~~~ltv~e~l~~   97 (251)
                      ++|++++++|||||||||++..|++.+.+..++|.+-+.|....     .  ...+..+.+++|.....+..++++++..
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~  191 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA  191 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence            57899999999999999999999999999889999988776321     1  1234678999987655555566676654

>TIGR00152 dephospho-CoA kinase

Probab=98.67  E-value=3.3e-08  Score=82.30  Aligned_cols=71  Identities=17%  Similarity=0.224  Sum_probs=63.0

Q ss_pred             hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHH--HHhhcCEEEEeeCCE
Q psy7367         136 GMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDE--ADLLGDRIAIIAAGK  208 (251)
Q Consensus       136 G~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~--~~~~~d~i~~l~~G~  208 (251)
                      |+-+|..||.++..+|+.+..+|  +.+||..++.+.+.+.+.. +|.+||+.+|.+.+  +..+||++++++.+.
T Consensus        61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~  134 (188)
T TIGR00152        61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSP  134 (188)
T ss_pred             CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECCH
Confidence            88899999999999999988877  8899999999999998875 46899999999965  778899999988763

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK13873 conjugal transfer ATPase TrbE; Provisional

Probab=98.65  E-value=5.5e-07  Score=90.69  Aligned_cols=62  Identities=24%  Similarity=0.281  Sum_probs=50.2

Q ss_pred             HccCCCEEEEeCCCCCCC-HHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHH---------hhcCEEEEeeCCE
Q psy7367         147 FIGGSRTVILDEPTSGVD-PYSRRSIWELLIKYK-KGRTVILTTHYMDEAD---------LLGDRIAIIAAGK  208 (251)
Q Consensus       147 l~~~p~llllDEPt~gLD-~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~---------~~~d~i~~l~~G~  208 (251)
                      +-.+|+++++|||+.+|| +..++.+.+.++..+ .|.+++++||+++.+.         ..|+..++|.+.+
T Consensus       632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~~~  704 (811)
T PRK13873        632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPNER  704 (811)
T ss_pred             hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCCch
Confidence            456899999999999999 788999999999885 5899999999997554         3456666666543

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.65  E-value=3e-08  Score=88.21  Aligned_cols=83  Identities=17%  Similarity=0.250  Sum_probs=59.3

Q ss_pred             eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEE---cceeCCCChHHhh-cceEEEccCCCC---C-CC
Q psy7367          17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI---YNHDIRTDMTTIR-RSLGVCPQYNAL---F-DK   88 (251)
Q Consensus        17 l~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~---~g~~~~~~~~~~~-~~i~~v~q~~~l---~-~~   88 (251)
                      ++.+...+. +++++++|+||+|||||+|.|.|...++.|+|..   .|+..+.....++ ...+++.+.|.+   . ..
T Consensus       152 i~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~  230 (287)
T cd01854         152 LDELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLH  230 (287)
T ss_pred             HHHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCcc
Confidence            344444555 5899999999999999999999999999999976   3443332222222 236799999876   3 46


Q ss_pred             CCHHHHHHHHHH
Q psy7367          89 LTVEEHMWFYSQ  100 (251)
Q Consensus        89 ltv~e~l~~~~~  100 (251)
                      ++..|...++..
T Consensus       231 ~~~~~~~~~f~~  242 (287)
T cd01854         231 IDPEELAHYFPE  242 (287)
T ss_pred             CCHHHHHHHhHH
Confidence            788887766543

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PF00488 MutS_V: MutS domain V C-terminus

Probab=98.64  E-value=1.2e-06  Score=75.70  Aligned_cols=47  Identities=28%  Similarity=0.427  Sum_probs=35.8

Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHh-h-hC-CCeEEEEeCCHHHHH
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIK-Y-KK-GRTVILTTHYMDEAD  195 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~-l-~~-g~tiii~tHd~~~~~  195 (251)
                      .+..++|+||+..|=++.....+...+.+ + ++ +..++++||+.+...
T Consensus       121 ~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~  170 (235)
T PF00488_consen  121 TEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAE  170 (235)
T ss_dssp             -TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred             ccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHH
Confidence            46779999999999999998887765554 4 33 889999999987654

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=98.63  E-value=3.5e-08  Score=90.31  Aligned_cols=59  Identities=20%  Similarity=0.219  Sum_probs=41.2

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCCCC--Ce-eEEEEcceeCCCChHHhhcceEEEccCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGMLPV--SS-GTAKIYNHDIRTDMTTIRRSLGVCPQYN   83 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p--~~-G~i~~~g~~~~~~~~~~~~~i~~v~q~~   83 (251)
                      ++|..+.|+||+||||||+|++|++.+.+  .. +.|.....++....+..+...++++|..
T Consensus       132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~  193 (358)
T TIGR02524       132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSE  193 (358)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeee
Confidence            48899999999999999999999998743  33 4565544444322223334457788864

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.59  E-value=2.8e-08  Score=67.89  Aligned_cols=39  Identities=26%  Similarity=0.464  Sum_probs=32.3

Q ss_pred             eeeeeEEEeC-CcEEEEEcCCCCcHHHHHHHHhCCCCCCe
Q psy7367          17 VNGLNVNFYE-DQITSFLGHNGAGKTTTISMLMGMLPVSS   55 (251)
Q Consensus        17 l~~isl~i~~-Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~   55 (251)
                      +++-++++.+ |+++.|.|||||||||+|.+|.=++-|..
T Consensus        12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~   51 (62)
T PF13555_consen   12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT   51 (62)
T ss_pred             cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence            4556788875 57999999999999999999987776654

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=98.58  E-value=1.1e-07  Score=70.11  Aligned_cols=51  Identities=29%  Similarity=0.377  Sum_probs=39.7

Q ss_pred             CCCCCcCChhHHH-HHHHHHHH------cc------CCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q psy7367         127 TSLANTLSGGMQR-KLSVAMAF------IG------GSRTVILDEPTSGVDPYSRRSIWELLIK  177 (251)
Q Consensus       127 ~~~~~~LSgG~kq-rv~ia~al------~~------~p~llllDEPt~gLD~~~~~~l~~~l~~  177 (251)
                      .+..+.+|||||| .+.+|.++      ..      .|++++|||||++||+..++.++++|++
T Consensus        27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~   90 (90)
T PF13558_consen   27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ   90 (90)
T ss_dssp             EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred             eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence            4678999999994 44444432      23      3799999999999999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	251
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		5e-23
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		2e-21
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		6e-21
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		1e-20
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		4e-20
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		9e-20
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		2e-19
3d31_A	348	Modbc From Methanosarcina Acetivorans Length = 348		3e-19
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		5e-19
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		5e-19
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		5e-19
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		8e-18
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		9e-18
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		2e-17
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		3e-16
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		4e-16
4hlu_D	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		4e-16
1g29_1	372	Malk Length = 372		5e-16
3qf4_A	587	Crystal Structure Of A Heterodimeric Abc Transporte		1e-15
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		1e-15
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		5e-15
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		6e-15
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		9e-15
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		9e-15
2onk_A	240	Abc Transporter Modbc In Complex With Its Binding P		2e-14
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		5e-13
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		5e-13
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		5e-13
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		7e-13
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		7e-13
1ji0_A	240	Crystal Structure Analysis Of The Abc Transporter F		7e-13
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		7e-13
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		1e-12
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		2e-12
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		2e-12
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		2e-12
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		7e-12
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		1e-11
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		1e-11
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		1e-11
4g1u_C	266	X-Ray Structure Of The Bacterial Heme Transporter H		1e-11
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		2e-11
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		2e-11
1g6h_A	257	Crystal Structure Of The Adp Conformation Of Mj1267		2e-11
1g9x_A	257	Characterization Of The Twinning Structure Of Mj126		2e-11
3qf4_B	598	Crystal Structure Of A Heterodimeric Abc Transporte		3e-11
3fvq_A	359	Crystal Structure Of The Nucleotide Binding Domain		5e-11
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		5e-11
1gaj_A	257	Crystal Structure Of A Nucleotide-Free Atp-Binding		6e-11
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		1e-10
4fwi_B	334	Crystal Structure Of The Nucleotide-binding Domain		2e-10
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		2e-10
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		3e-10
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		4e-10
2cbz_A	237	Structure Of The Human Multidrug Resistance Protein		1e-09
2pjz_A	263	The Crystal Structure Of Putative Cobalt Transport		3e-09
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		4e-09
2nq2_C	253	An Inward-Facing Conformation Of A Putative Metal-C		6e-09
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		2e-08
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		3e-08
2ixe_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		2e-07
2pzg_A	241	Minimal Human Cftr First Nucleotide Binding Domain		5e-07
2pze_A	229	Minimal Human Cftr First Nucleotide Binding Domain		6e-07
3ozx_A	538	Crystal Structure Of Abce1 Of Sulfolubus Solfataric		7e-07
1jj7_A	260	Crystal Structure Of The C-Terminal Atpase Domain O		8e-07
2bbo_A	291	Human Nbd1 With Phe508 Length = 291		8e-07
2ihy_A	279	Structure Of The Staphylococcus Aureus Putative Atp		2e-06
2pzf_A	228	Minimal Human Cftr First Nucleotide Binding Domain		3e-06
1r0z_A	286	Phosphorylated Cystic Fibrosis Transmembrane Conduc		4e-06
1q3h_A	286	Mouse Cftr Nbd1 With Amp.Pnp Length = 286		4e-06
1xmj_A	290	Crystal Structure Of Human Deltaf508 Human Nbd1 Dom		5e-06
2ixg_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		6e-06
1xmi_A	291	Crystal Structure Of Human F508a Nbd1 Domain With A		6e-06
1b0u_A	262	Atp-Binding Subunit Of The Histidine Permease From		6e-06
2bbt_A	290	Human Deltaf508 Nbd1 With Two Solublizing Mutations		1e-05
2bbs_A	290	Human Deltaf508 Nbd1 With Three Solubilizing Mutati		1e-05
3gd7_A	390	Crystal Structure Of Human Nbd2 Complexed With N6-		2e-05
3si7_A	285	The Crystal Structure Of The Nbd1 Domain Of The Mou		3e-05
1xfa_A	283	Structure Of Nbd1 From Murine Cftr- F508r Mutant Le		4e-05
1xf9_A	283	Structure Of Nbd1 From Murine Cftr- F508s Mutant Le		4e-05
3j15_B	593	Model Of Ribosome-Bound Archaeal Pelota And Abce1 L		8e-05
2zu0_C	267	Crystal Structure Of Sufc-Sufd Complex Involved In		9e-05
2d3w_A	248	Crystal Structure Of Escherichia Coli Sufc, An Atpa		9e-05
3bk7_A	607	Structure Of The Complete Abce1RNAASE-L Inhibitor P		1e-04
1yqt_A	538	Rnase-L Inhibitor Length = 538		2e-04
3j16_B	608	Models Of Ribosome-Bound Dom34p And Rli1p And Their		3e-04
3pih_A	916	T. Maritima Uvra In Complex With Fluorescein-Modifi		4e-04

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score =  104 bits (260), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 123/239 (51%), Gaps = 10/239 (4%)
Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           + ++ L+  + +G  A+ G+N+N    ++T+ LG NG GK+T      G+L  SSG    
Sbjct: 8   LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF 67
Query: 61  YNHDI---RTDMTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISN 115
            N  I   R  +  +R S+G+  Q   N LF   +V + + F +   ++P+D  +  + N
Sbjct: 68  DNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSA-SVYQDVSFGAVNMKLPEDEIRKRVDN 126
Query: 116 MIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
            +   GI H +    + LS G ++++++A   +   + +ILDEPT+G+DP     I +LL
Sbjct: 127 ALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL 186
Query: 176 IKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGK--LQCCGSSVFLKNSFARGYYLSL 230
           ++ +K  G T+I+ TH +D   L  D + ++  G+  LQ     VF +    R   L L
Sbjct: 187 VEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRL 245

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 132/259 (50%), Gaps = 19/259 (7%)
Query: 1   MAIQNLSKRFPNGKLAVNGLN---VNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
           + + N++K F  G   +  LN   ++    QI   +G +GAGK+T I  +  +   + G+
Sbjct: 2   IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 58  AKIYNHDIRT----DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEI 113
             +   ++ T    ++T  RR +G+  Q+  L    TV  ++    +L   PKD  +  +
Sbjct: 62  VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 114 SNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
           + ++  +G+  K  S  + LSGG ++++++A A     + ++ DE TS +DP + RSI E
Sbjct: 122 TELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181
Query: 174 LL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL--QCCGSSVF--LKNSFARGYY 227
           LL  I  + G T++L TH MD    + D +A+I+ G+L  Q   S VF   K   A+ + 
Sbjct: 182 LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFI 241
Query: 228 ---LSLDMKS---AQLQAE 240
              L LD+      +LQAE
Sbjct: 242 QSTLHLDIPEDYQERLQAE 260

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 132/259 (50%), Gaps = 19/259 (7%)
Query: 1   MAIQNLSKRFPNGKLAVNGLN---VNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
           + + N++K F  G   +  LN   ++    QI   +G +GAGK+T I  +  +   + G+
Sbjct: 25  IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 58  AKIYNHDIRT----DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEI 113
             +   ++ T    ++T  RR +G+  Q+  L    TV  ++    +L   PKD  +  +
Sbjct: 85  VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144
Query: 114 SNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
           + ++  +G+  K  S  + LSGG ++++++A A     + ++ D+ TS +DP + RSI E
Sbjct: 145 TELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE 204
Query: 174 LL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL--QCCGSSVF--LKNSFARGYY 227
           LL  I  + G T++L TH MD    + D +A+I+ G+L  Q   S VF   K   A+ + 
Sbjct: 205 LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFI 264
Query: 228 ---LSLDMKS---AQLQAE 240
              L LD+      +LQAE
Sbjct: 265 QSTLHLDIPEDYQERLQAE 283

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 114/223 (51%), Gaps = 2/223 (0%)
Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           + +++L KR    ++ + G++    E +I   +G NGAGKTTT+ ++  ++  SSG   +
Sbjct: 16  VVVKDLRKRIGKKEI-LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTV 74
Query: 61  YNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
           +  ++  +   +R+ +   P+    +  +   E++ F +          +  +       
Sbjct: 75  FGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIA 134
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-K 179
           G+  K     +T S GM RKL +A A +   R  ILDEPTSG+D  + R + ++L +  +
Sbjct: 135 GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 194
Query: 180 KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSF 222
           +G T+++++H M E + L DRIA+I  G +   G+   LK  +
Sbjct: 195 EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 237

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 130/259 (50%), Gaps = 19/259 (7%)
Query: 1   MAIQNLSKRFPNGKLAVNGLN---VNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
           + + N++K F  G   +  LN   ++    QI   +G +GAGK+T I  +  +   + G+
Sbjct: 25  IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 58  AKIYNHDIRT----DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEI 113
             +   ++ T    ++T  RR +G   Q+  L    TV  ++    +L   PKD  +  +
Sbjct: 85  VLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144
Query: 114 SNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
           + ++  +G+  K  S  + LSGG ++++++A A     + ++ D+ TS +DP + RSI E
Sbjct: 145 TELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE 204
Query: 174 LL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL--QCCGSSVF--LKNSFARGYY 227
           LL  I  + G T++L TH  D    + D +A+I+ G+L  Q   S VF   K   A+ + 
Sbjct: 205 LLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFI 264
Query: 228 ---LSLDMKS---AQLQAE 240
              L LD+      +LQAE
Sbjct: 265 QSTLHLDIPEDYQERLQAE 283

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 93.6 bits (231), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 110/211 (52%), Gaps = 3/211 (1%)
Query: 6   LSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI 65
           + K +P G  +V G++    E ++   LG +G+GKTT + ++ G+   + G   I    +
Sbjct: 20  VEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRV 79
Query: 66  RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK 125
            TD+   +R++G+  Q  ALF  +TV +++ F  + K+VPKD     +  ++  + +   
Sbjct: 80  -TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESY 138
Query: 126 RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKGRT 183
                + LSGG Q+++++A A     + ++ DEP + +D   RR +   +  +  + G T
Sbjct: 139 ANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVT 198
Query: 184 VILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
            +  TH  +EA  + DR+ ++  G ++  G+
Sbjct: 199 SVFVTHDQEEALEVADRVLVLHEGNVEQFGT 229

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 126/247 (51%), Gaps = 8/247 (3%)
Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           + ++N+ K+F N   A+N +N+   + +  + LG +G+GK+T +  + G+   +SG    
Sbjct: 4   IKLENIVKKFGNFT-ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62
Query: 61  YNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
              D+ T++    R++G+  Q  AL+  +TV +++ F  +L++ P++    ++  +   L
Sbjct: 63  DEKDV-TELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKML 121
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
            I          LSGG Q+++++A A +     ++LDEP S +D   R  +   L + +K
Sbjct: 122 HIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQK 181
Query: 181 --GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS--SVFLKN--SFARGYYLSLDMKS 234
             G T +  TH   EA  + DRIA+I  G++   G+   V+ K    F  G+  +  M  
Sbjct: 182 ELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFVGGFLGNPPMNF 241
Query: 235 AQLQAED 241
            + + ED
Sbjct: 242 VEAKVED 248

>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 117/215 (54%), Gaps = 8/215 (3%)
Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           + I++LS+++ N   +++ L++     +    LG  GAGKT  + ++ G     SG   +
Sbjct: 2   IEIESLSRKWKN--FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59
Query: 61  YNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
              D+ TD++  +  +    Q  +LF  + V++++ F  ++K++      L+ +    DL
Sbjct: 60  DGKDV-TDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTAR---DL 115
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL-IKYK 179
            I H       TLSGG Q+++++A A +   + ++LDEP S +DP ++ +  E+L + +K
Sbjct: 116 KIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK 175
Query: 180 KGR-TVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213
           K + TV+  TH   EA ++ DRIA++  GKL   G
Sbjct: 176 KNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVG 210

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 129/256 (50%), Gaps = 8/256 (3%)
Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           + ++NL+KRF N   AVN LN+   + +    LG +G GKTTT+ M+ G+   + G    
Sbjct: 13  VKLENLTKRFGNFT-AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 71
Query: 61  YNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
            + D+ T +    R++ +  Q  A++  +TV E++ F  ++K+ PKD     +      L
Sbjct: 72  GDRDV-TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELL 130
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
            I          LSGG +++++VA A +     +++DEP S +D   R ++   + K ++
Sbjct: 131 QIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 190
Query: 181 GR--TVILTTHYMDEADLLGDRIAIIAAGKLQCCGS--SVFLKNS--FARGYYLSLDMKS 234
               T I  TH   EA  +GDRIA++  G+L   GS   V+L+ +  F   +  + +M  
Sbjct: 191 KLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGAPEMNI 250
Query: 235 AQLQAEDIGLDGDRIR 250
            ++   D  L+G   R
Sbjct: 251 LEVSVGDGYLEGRGFR 266

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 129/256 (50%), Gaps = 8/256 (3%)
Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           + ++NL+KRF N   AVN LN+   + +    LG +G GKTTT+ M+ G+   + G    
Sbjct: 12  VKLENLTKRFGNFT-AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 70
Query: 61  YNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
            + D+ T +    R++ +  Q  A++  +TV E++ F  ++K+ PKD     +      L
Sbjct: 71  GDRDV-TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELL 129
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
            I          LSGG +++++VA A +     +++DEP S +D   R ++   + K ++
Sbjct: 130 QIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 189
Query: 181 GR--TVILTTHYMDEADLLGDRIAIIAAGKLQCCGS--SVFLKNS--FARGYYLSLDMKS 234
               T I  TH   EA  +GDRIA++  G+L   GS   V+L+ +  F   +  + +M  
Sbjct: 190 KLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGAPEMNI 249
Query: 235 AQLQAEDIGLDGDRIR 250
            ++   D  L+G   R
Sbjct: 250 LEVSVGDGYLEGRGFR 265

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 132/261 (50%), Gaps = 26/261 (9%)
Query: 3   IQNLSKRFPNGKL-AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           + NL K F  GK+ AV+G++    + +  + LG +G GKTTT+ ML G+   +SG  +IY
Sbjct: 6   VVNLKKYF--GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSG--EIY 61
Query: 62  NHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
             D+   D+    R +G+  Q  AL+  +TV E++ F  + +++ KD  +  +  +   L
Sbjct: 62  FDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKL 121
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
            I +        LSGG Q+++++A A +   + ++ DEP S +D  + R I    IK+ +
Sbjct: 122 LIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD-ANLRMIMRAEIKHLQ 180
Query: 181 ---GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS-------------SVFLKN---S 221
              G T +  TH   EA  +  RIA+   GKL   G+             + F+ N   +
Sbjct: 181 QELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFIGNPPTN 240
Query: 222 FARGYYLSLDMKSAQLQAEDI 242
           F R + +S++ K   L+ +D+
Sbjct: 241 FLRDFSVSVENKQTILKRDDV 261

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 87.0 bits (214), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 118/237 (49%), Gaps = 10/237 (4%)
Query: 3   IQNLSKRFPNGKLAVN-GLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           +QN++K +  G++ V+  +N++ +E +   F+G +G GK+T + M+ G+  ++SG   I 
Sbjct: 6   LQNVTKAW--GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 63
Query: 62  NHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG 121
              +  D     R +G+  Q  AL+  L+V E+M F  +L    K++    ++ +   L 
Sbjct: 64  EKRM-NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ 122
Query: 122 IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK- 180
           + H        LSGG ++++++    +      +LDEP S +D   R  +   + +  K 
Sbjct: 123 LAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR 182
Query: 181 -GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL----KNSFARGYYLSLDM 232
            GRT+I  TH   EA  L D+I ++ AG++   G  + L     + F  G+  S  M
Sbjct: 183 LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKM 239

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 87.0 bits (214), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 118/237 (49%), Gaps = 10/237 (4%)
Query: 3   IQNLSKRFPNGKLAVN-GLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           +QN++K +  G++ V+  +N++ +E +   F+G +G GK+T + M+ G+  ++SG   I 
Sbjct: 6   LQNVTKAW--GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 63
Query: 62  NHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG 121
              +  D     R +G+  Q  AL+  L+V E+M F  +L    K++    ++ +   L 
Sbjct: 64  EKRM-NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ 122
Query: 122 IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK- 180
           + H        LSGG ++++++    +      +LDEP S +D   R  +   + +  K 
Sbjct: 123 LAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR 182
Query: 181 -GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL----KNSFARGYYLSLDM 232
            GRT+I  TH   EA  L D+I ++ AG++   G  + L     + F  G+  S  M
Sbjct: 183 LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKM 239

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 118/237 (49%), Gaps = 10/237 (4%)
Query: 3   IQNLSKRFPNGKLAVN-GLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           +QN++K +  G++ V+  +N++ +E +   F+G +G GK+T + M+ G+  ++SG   I 
Sbjct: 6   LQNVTKAW--GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 63
Query: 62  NHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG 121
              +  D     R +G+  Q  AL+  L+V E+M F  +L    K++    ++ +   L 
Sbjct: 64  EKRM-NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ 122
Query: 122 IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK- 180
           + H        LSGG ++++++    +      +LD+P S +D   R  +   + +  K 
Sbjct: 123 LAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKR 182
Query: 181 -GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL----KNSFARGYYLSLDM 232
            GRT+I  TH   EA  L D+I ++ AG++   G  + L     + F  G+  S  M
Sbjct: 183 LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKM 239

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 115/222 (51%), Gaps = 11/222 (4%)
Query: 1   MAIQNLSKRFPNGKL-AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           + ++N+SK F  GK+ A++ +N+N    +    LG +GAGKTT + ++ G+   S+G   
Sbjct: 4   IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 60  IYNHDIRTDMTTI----RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISN 115
             +  + ++   I     R +G+  Q  AL+  LT  E++ F     ++ K+  +  +  
Sbjct: 64  FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123
Query: 116 MIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
           +   L I H        LSGG Q+++++A A +     ++LDEP S +D   R S   L+
Sbjct: 124 VAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183
Query: 176 --IKYKKGRTVILTTHYMDEADL--LGDRIAIIAAGKLQCCG 213
             ++ + G T+++ +H  D AD+  + DR+ ++  GKL   G
Sbjct: 184 KEVQSRLGVTLLVVSH--DPADIFAIADRVGVLVKGKLVQVG 223

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 12/233 (5%)
Query: 5   NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD 64
           N+ KRF     AV  L++   + +    LG +G GKTTT+  + G+   + G   I ++ 
Sbjct: 11  NIWKRF-GDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNL 69
Query: 65  IRTDMTTI-----RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
           +      +      R +    Q  AL+   TV +++ F  +L++VPK      +  +   
Sbjct: 70  VADPEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEX 129
Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
           LG+          LSGG ++++++  A I   +  + DEP S +D   R      L K +
Sbjct: 130 LGLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQ 189
Query: 180 K--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS--SVFLK--NSFARGY 226
           +  G T I  TH   EA   GDRIA+   G+LQ  G+   V+ K  N+F  G+
Sbjct: 190 RQLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEVYYKPVNTFVAGF 242

>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 118/228 (51%), Gaps = 14/228 (6%)
Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           + + ++S R+ NG   +  +N  F   +I   +G NG+GKTT + +L G+L   +   +I
Sbjct: 12  IELNSVSFRY-NGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL---AAAGEI 67
Query: 61  YNHDIRTDMTTIRRSLGVCPQY-NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
           +      D   +R+++G   Q  ++     TVEE + F  ++  + +   +  I  ++  
Sbjct: 68  FLDGSPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLEL 127
Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
           +G+     +    LSGG +++L++A      +R + LDEP S +DP S+R I+++L   K
Sbjct: 128 VGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLK 187
Query: 180 -KGRTVILTTH---YMDEADLLGDRIAIIAAGKLQCCGS-SVFLKNSF 222
            +G+ +IL TH   Y+D+ D     I  I+ G +  CGS   F++  F
Sbjct: 188 NEGKGIILVTHELEYLDDMDF----ILHISNGTIDFCGSWEEFVEREF 231

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 11/228 (4%)
Query: 16  AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI--- 72
           AV  +++   + +    LG +G GKTTT+ M+ G+   S G   I +  +      I   
Sbjct: 18  AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVP 77
Query: 73  --RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLA 130
              R + +  Q  AL+  +TV +++ F  +L++VP+      +  +   LG+        
Sbjct: 78  PKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP 137
Query: 131 NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK--GRTVILTT 188
             LSGG ++++++  A +   +  ++DEP S +D   R  +   L K ++  G T I  T
Sbjct: 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVT 197
Query: 189 HYMDEADLLGDRIAIIAAGKLQCCGS--SVFLK--NSFARGYYLSLDM 232
           H   EA  +GDRIA++  G LQ  GS   V+ K  N+F  G+  S  M
Sbjct: 198 HDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFIGSPPM 245

>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 107/220 (48%), Gaps = 7/220 (3%)
Query: 1   MAIQNLSKR-FPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           ++ +N+  R F N    ++G+N +     + + LG  G+GK+T ++++  ++    G  +
Sbjct: 342 VSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVE 401
Query: 60  IYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK--QVPKDLAQLEISNM 116
           +   D+RT  +  +R  +   PQ   LF     E   W        ++ +     +I + 
Sbjct: 402 VDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDF 461
Query: 117 IVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
           I+ L  G   +        SGG +++LS+A A +   + +ILD+ TS VDP + + I + 
Sbjct: 462 IISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDG 521
Query: 175 LIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           L +Y KG T  + T  +  A LL D+I ++  GK+   G+
Sbjct: 522 LKRYTKGCTTFIITQKIPTA-LLADKILVLHEGKVAGFGT 560

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 114/222 (51%), Gaps = 11/222 (4%)
Query: 1   MAIQNLSKRFPNGKL-AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           + ++N+SK F  GK+ A++ +N+N    +    LG +GAGKTT + ++ G+   S+G   
Sbjct: 4   IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 60  IYNHDIRTDMTTI----RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISN 115
             +  + ++   I     R +G+  Q  AL+  LT  E++ F     ++ K+  +  +  
Sbjct: 64  FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123
Query: 116 MIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
           +   L I H        LSG  Q+++++A A +     ++LDEP S +D   R S   L+
Sbjct: 124 VAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183
Query: 176 --IKYKKGRTVILTTHYMDEADL--LGDRIAIIAAGKLQCCG 213
             ++ + G T+++ +H  D AD+  + DR+ ++  GKL   G
Sbjct: 184 KEVQSRLGVTLLVVSH--DPADIFAIADRVGVLVKGKLVQVG 223

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 110/211 (52%), Gaps = 8/211 (3%)
Query: 3   IQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           +  L K F  G L V  G+NV+  E ++   +G +G+GK+T +  L  +     G   I 
Sbjct: 27  VHQLKKSF--GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIID 84
Query: 62  NHDIR---TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYS-QLKQVPKDLAQLEISNMI 117
             +++   T++  +R  +G+  Q   LF  +TV  ++     ++++ P++ A+ +   ++
Sbjct: 85  GINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELL 144
Query: 118 VDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK 177
             +G+  K  +  ++LSGG  +++++A A     + ++ DEPTS +DP     +  ++ +
Sbjct: 145 DKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 204
Query: 178 Y-KKGRTVILTTHYMDEADLLGDRIAIIAAG 207
              +G T+++ TH M  A  +GDR+  +  G
Sbjct: 205 LANEGMTMVVVTHEMGFAREVGDRVLFMDGG 235

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 110/211 (52%), Gaps = 8/211 (3%)
Query: 3   IQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           +  L K F  G L V  G+NV+  E ++   +G +G+GK+T +  L  +     G   I 
Sbjct: 6   VHQLKKSF--GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIID 63
Query: 62  NHDIR---TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYS-QLKQVPKDLAQLEISNMI 117
             +++   T++  +R  +G+  Q   LF  +TV  ++     ++++ P++ A+ +   ++
Sbjct: 64  GINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELL 123
Query: 118 VDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK 177
             +G+  K  +  ++LSGG  +++++A A     + ++ DEPTS +DP     +  ++ +
Sbjct: 124 DKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 183
Query: 178 Y-KKGRTVILTTHYMDEADLLGDRIAIIAAG 207
              +G T+++ TH M  A  +GDR+  +  G
Sbjct: 184 LANEGMTMVVVTHEMGFAREVGDRVLFMDGG 214

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 77.0 bits (188), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 103/201 (51%), Gaps = 13/201 (6%)
Query: 1   MAIQNLSKRFPNGKLA--VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA 58
           +  +N+   +P+ K    + GLN+     Q  + +G++G GK+TT+ ++  +     G  
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 59  KIYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ---LKQVPKDLAQLEIS 114
            I   DIRT ++  +R  +GV  Q   LF   T+ E++ +  +   + ++ K + +    
Sbjct: 448 SIDGQDIRTINVRYLREIIGVVSQEPVLF-ATTIAENIRYGREDVTMDEIEKAVKEANAY 506
Query: 115 NMIVDLGIPHKRTSLANT----LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
           + I+ L  PH+  +L       LSGG ++++++A A +   + ++LDE TS +D  S   
Sbjct: 507 DFIMKL--PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV 564
Query: 171 IWELLIKYKKGRTVILTTHYM 191
           +   L K ++GRT I+  H +
Sbjct: 565 VQAALDKAREGRTTIVIAHRL 585

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 77.0 bits (188), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 103/201 (51%), Gaps = 13/201 (6%)
Query: 1   MAIQNLSKRFPNGKLA--VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA 58
           +  +N+   +P+ K    + GLN+     Q  + +G++G GK+TT+ ++  +     G  
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 59  KIYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ---LKQVPKDLAQLEIS 114
            I   DIRT ++  +R  +GV  Q   LF   T+ E++ +  +   + ++ K + +    
Sbjct: 448 SIDGQDIRTINVRYLREIIGVVSQEPVLF-ATTIAENIRYGREDVTMDEIEKAVKEANAY 506
Query: 115 NMIVDLGIPHKRTSLANT----LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
           + I+ L  PH+  +L       LSGG ++++++A A +   + ++LDE TS +D  S   
Sbjct: 507 DFIMKL--PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV 564
Query: 171 IWELLIKYKKGRTVILTTHYM 191
           +   L K ++GRT I+  H +
Sbjct: 565 VQAALDKAREGRTTIVIAHRL 585

>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 99/193 (51%), Gaps = 6/193 (3%)
Query: 20  LNVNFYEDQ-ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGV 78
           LNV+F   +     LG  GAGK+  + ++ G++    G  ++   DI T +   RR +G 
Sbjct: 16  LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI-TPLPPERRGIGF 74
Query: 79  CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQ 138
            PQ  ALF  L+V  ++ +   L+ V +      +  M   LGI H        LSGG +
Sbjct: 75  VPQDYALFPHLSVYRNIAY--GLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGER 132
Query: 139 RKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKGRTVILTTHYMDEADL 196
           +++++A A +   R ++LDEP S VD  ++  + E L  ++ +    ++  TH + EA +
Sbjct: 133 QRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAM 192
Query: 197 LGDRIAIIAAGKL 209
           L D +A++  G++
Sbjct: 193 LADEVAVMLNGRI 205

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 121/254 (47%), Gaps = 19/254 (7%)
Query: 1   MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG 56
           + + N+S  F  G    K A+  +++   E +     G+ G+GK+T + ++ G++  +SG
Sbjct: 5   IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 64
Query: 57  TAKIYNHDIRTDMTTIRRSLGVCPQY--NALFDKLTVEEHMW----FYSQLKQVPKDLAQ 110
              +Y+ + R     IRR++G+  QY  +  F +   +E  +    FY     VP     
Sbjct: 65  DV-LYDGE-RKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKA 122
Query: 111 LEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
           +E     V L     +  +   LSGG +R++++A   +     +ILDEP  G+D   +  
Sbjct: 123 MEF----VGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTD 178
Query: 171 IWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLS 229
           +  ++ K+K  G+TVIL +H ++      DR+ ++  GK    G+ +     +   ++ S
Sbjct: 179 LLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTS 238
Query: 230 --LDMKSAQLQAED 241
             L M+   L+ ED
Sbjct: 239 KMLVMRRLVLKGED 252

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 99/190 (52%), Gaps = 10/190 (5%)
Query: 17  VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR-TDMTTIRRS 75
           + G+N+     Q  + +G +G GK+T IS+L+    V  G   I   D+R  ++  +R++
Sbjct: 434 LRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKN 493
Query: 76  LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG-IPHKRTSLA---- 130
           + V  Q  ALF+  T+EE++    +     + +A  +++N    +  +P+   +L     
Sbjct: 494 VAVVSQEPALFN-CTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRG 552
Query: 131 NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHY 190
             LSGG ++++++A A +   + ++LDE TS +D  S   + + L K  KGRT I+  H 
Sbjct: 553 TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHR 612
Query: 191 MD---EADLL 197
           +     ADL+
Sbjct: 613 LSTIRNADLI 622

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 121/254 (47%), Gaps = 19/254 (7%)
Query: 1   MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG 56
           + + N+S  F  G    K A+  +++   E +     G+ G+GK+T + ++ G++  +SG
Sbjct: 3   IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 57  TAKIYNHDIRTDMTTIRRSLGVCPQY--NALFDKLTVEEHMW----FYSQLKQVPKDLAQ 110
              +Y+ + R     IRR++G+  QY  +  F +   +E  +    FY     VP     
Sbjct: 63  DV-LYDGE-RKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKA 120
Query: 111 LEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
           +E     V L     +  +   LSGG +R++++A   +     +ILDEP  G+D   +  
Sbjct: 121 MEF----VGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTD 176
Query: 171 IWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLS 229
           +  ++ K+K  G+TVIL +H ++      DR+ ++  GK    G+ +     +   ++ S
Sbjct: 177 LLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTS 236
Query: 230 --LDMKSAQLQAED 241
             L M+   L+ ED
Sbjct: 237 KMLVMRRLVLKGED 250

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 106/223 (47%), Gaps = 23/223 (10%)
Query: 1   MAIQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           +  +N+  R+ P+  + ++ +N++  + ++   +G +G+GK+T   ++       +G   
Sbjct: 2   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 60  IYNHDIR-TDMTTIRRSLGVCPQYNALFDKLTVE-----------EHMWFYSQLKQVPKD 107
           I  HD+   D   +RR +GV  Q N L ++  ++           E + + ++L      
Sbjct: 62  IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 108 LAQL-EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
           +++L E  N IV              LSGG ++++++A A +   + +I DE TS +D  
Sbjct: 122 ISELREGYNTIV--------GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 167 SRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           S   I   + K  KGRTVI+  H +       DRI ++  GK+
Sbjct: 174 SEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKI 215

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 106/223 (47%), Gaps = 23/223 (10%)
Query: 1   MAIQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           +  +N+  R+ P+  + ++ +N++  + ++   +G +G+GK+T   ++       +G   
Sbjct: 8   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 60  IYNHDIR-TDMTTIRRSLGVCPQYNALFDKLTVE-----------EHMWFYSQLKQVPKD 107
           I  HD+   D   +RR +GV  Q N L ++  ++           E + + ++L      
Sbjct: 68  IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 108 LAQL-EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
           +++L E  N IV              LSGG ++++++A A +   + +I DE TS +D  
Sbjct: 128 ISELREGYNTIV--------GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 167 SRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           S   I   + K  KGRTVI+  H +       DRI ++  GK+
Sbjct: 180 SEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKI 221

>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 101/237 (42%), Gaps = 40/237 (16%)
Query: 16  AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI--R 73
           A+ G+++     QI + +G NGAGKTTT+S + G++    G       DI      +  R
Sbjct: 21  AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80
Query: 74  RSLGVCPQYNALFDKLTVEEHM------------------WFYSQLKQVPKDLAQLEISN 115
             + + P+   +F +LTV E++                  W +S   ++ + L Q     
Sbjct: 81  XGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQ----- 135
Query: 116 MIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
                        L  TLSGG Q+ L++  A     + +  DEP+ G+ P     ++E++
Sbjct: 136 -------------LGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVI 182
Query: 176 IKY-KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG-SSVFLKNSFARGYYLSL 230
            K  ++G T++L       A  +     ++  G++   G +S  L N   R  YL +
Sbjct: 183 QKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEXVRKAYLGV 239

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 106/223 (47%), Gaps = 23/223 (10%)
Query: 1   MAIQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           +  +N+  R+ P+  + ++ +N++  + ++   +G +G+GK+T   ++       +G   
Sbjct: 4   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 60  IYNHDIR-TDMTTIRRSLGVCPQYNALFDKLTVE-----------EHMWFYSQLKQVPKD 107
           I  HD+   D   +RR +GV  Q N L ++  ++           E + + ++L      
Sbjct: 64  IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 108 LAQL-EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
           +++L E  N IV              LSGG ++++++A A +   + +I DE TS +D  
Sbjct: 124 ISELREGYNTIV--------GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 175
Query: 167 SRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           S   I   + K  KGRTVI+  H +       DRI ++  GK+
Sbjct: 176 SEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKI 217

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 105/223 (47%), Gaps = 23/223 (10%)
Query: 1   MAIQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           +  +N+  R+ P+  + ++ +N++  + ++   +G  G+GK+T   ++       +G   
Sbjct: 4   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 60  IYNHDIR-TDMTTIRRSLGVCPQYNALFDKLTVE-----------EHMWFYSQLKQVPKD 107
           I  HD+   D   +RR +GV  Q N L ++  ++           E + + ++L      
Sbjct: 64  IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 108 LAQL-EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
           +++L E  N IV              LSGG ++++++A A +   + +I DE TS +D  
Sbjct: 124 ISELREGYNTIV--------GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 175
Query: 167 SRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           S   I   + K  KGRTVI+  H +       DRI ++  GK+
Sbjct: 176 SEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKI 217

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 103/206 (50%), Gaps = 15/206 (7%)
Query: 14  KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTI 72
           K A++ ++ +  + +  + +G +G+GK+T  ++      V SG+  +  HD+R   +T +
Sbjct: 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNL 415
Query: 73  RRSLGVCPQYNALFDKLTVE------EHMWFYSQLKQVPKDLAQLE-ISNMI--VDLGIP 123
           RR   +  Q   LF+           E  +   Q++Q  +    +E I NM   +D  I 
Sbjct: 416 RRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIG 475
Query: 124 HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRT 183
              TSL    SGG ++++++A A +  +  +ILDE TS +D  S R+I   L + +K +T
Sbjct: 476 ENGTSL----SGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKT 531
Query: 184 VILTTHYMDEADLLGDRIAIIAAGKL 209
           V++  H +   +   D I ++  G++
Sbjct: 532 VLVIAHRLSTIE-QADEILVVDEGEI 556

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 101/201 (50%), Gaps = 8/201 (3%)
Query: 20  LNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMT-TIRRSLGV 78
           +N++  + +  +F+G +G GK+T I+++     V+SG   I  H+I+  +T ++R  +G+
Sbjct: 360 INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGL 419
Query: 79  CPQYNALFDKLTVEEHMWF---YSQLKQVPKDLAQLEISNMIVDL--GIPHKRTSLANTL 133
             Q N LF   TV+E++      +  ++V +        + I++L  G   +       L
Sbjct: 420 VQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKL 478
Query: 134 SGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDE 193
           SGG +++LS+A  F+     +ILDE TS +D  S   I E L    K RT ++  H +  
Sbjct: 479 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLST 538
Query: 194 ADLLGDRIAIIAAGKLQCCGS 214
                D+I +I  G +   G+
Sbjct: 539 IT-HADKIVVIENGHIVETGT 558

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 106/223 (47%), Gaps = 23/223 (10%)
Query: 1   MAIQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           +  +N+  R+ P+  + ++ +N++  + ++   +G +G+GK+T   ++       +G   
Sbjct: 8   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 60  IYNHDIR-TDMTTIRRSLGVCPQYNALFDKLTVE-----------EHMWFYSQLKQVPKD 107
           I  HD+   D   +RR +GV  Q N L ++  ++           E + + ++L      
Sbjct: 68  IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 108 LAQL-EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
           +++L E  N IV              LSGG ++++++A A +   + +I D+ TS +D  
Sbjct: 128 ISELREGYNTIV--------GEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYE 179
Query: 167 SRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           S   I   + K  KGRTVI+  H +       DRI ++  GK+
Sbjct: 180 SEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKI 221

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 95/193 (49%), Gaps = 9/193 (4%)
Query: 29  ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALFD 87
           +T+ +G +G+GK+T +S+L+ +   +SGT  +  HDIR  +   +R  +G   Q   LF 
Sbjct: 403 VTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS 462
Query: 88  KLTVEEHMWFYSQLKQVPKDLAQ--LEISNMIVDL-GIPHKRTSLANT----LSGGMQRK 140
               E   +       V  +  Q   E++N +  +   P    ++       LSGG +++
Sbjct: 463 CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQR 522
Query: 141 LSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDR 200
           +++A A +   + ++LDE TS +D  +   + E L +   GRTV++  H++       + 
Sbjct: 523 IAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIK-NANM 581
Query: 201 IAIIAAGKLQCCG 213
           +A++  GK+   G
Sbjct: 582 VAVLDQGKITEYG 594

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 105/223 (47%), Gaps = 23/223 (10%)
Query: 1   MAIQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           +  +N+  R+ P+  + ++ +N++  + ++   +G +G+GK+T   ++       +G   
Sbjct: 2   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 60  IYNHDIR-TDMTTIRRSLGVCPQYNALFDKLTVE-----------EHMWFYSQLKQVPKD 107
           I  HD+   D   +RR +GV  Q N L ++  ++           E + + ++L      
Sbjct: 62  IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 108 LAQL-EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
           +++L E  N IV              LSGG ++++++A A +   + +I DE TS +D  
Sbjct: 122 ISELREGYNTIV--------GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 167 SRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           S   I   + K  KGRTVI+    +       DRI ++  GK+
Sbjct: 174 SEHVIMRNMHKICKGRTVIIIAARLSTVK-NADRIIVMEKGKI 215

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 105/223 (47%), Gaps = 23/223 (10%)
Query: 1   MAIQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           +  +N+  R+ P+  + ++ +N++  + ++   +G +G+GK+T   ++       +G   
Sbjct: 8   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 60  IYNHDIR-TDMTTIRRSLGVCPQYNALFDKLTVE-----------EHMWFYSQLKQVPKD 107
           I  HD+   D   +RR +GV  Q N L ++  ++           E + + ++L      
Sbjct: 68  IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 108 LAQL-EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
           +++L E  N IV              LSGG ++++++A A +   + +I DE TS +D  
Sbjct: 128 ISELREGYNTIV--------GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 167 SRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           S   I   + K  KGRTVI+    +       DRI ++  GK+
Sbjct: 180 SEHVIMRNMHKICKGRTVIIIAARLSTVK-NADRIIVMEKGKI 221

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 103/214 (48%), Gaps = 10/214 (4%)
Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           +  +N+   + +G+  +  ++      Q  + +G +GAGK+T + +L     +SSG  +I
Sbjct: 54  IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRI 113
Query: 61  YNHDI-RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
              DI +    ++R  +GV PQ   LF+  T+ +++  Y ++     ++     +  I D
Sbjct: 114 DGQDISQVTQASLRSHIGVVPQDTVLFND-TIADNIR-YGRVTAGNDEVEAAAQAAGIHD 171
Query: 120 --LGIPHK-RTSLAN---TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
             +  P   RT +      LSGG ++++++A   +     ++LDE TS +D  + R+I  
Sbjct: 172 AIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQA 231
Query: 174 LLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAG 207
            L K    RT I+  H +    +  D+I +I  G
Sbjct: 232 SLAKVCANRTTIVVAHRLSTV-VNADQILVIKDG 264

>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 19/218 (8%)
Query: 17  VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRS 75
           +N ++++    ++ + +G NGAGK+T + +L G L  S G   +   ++ +     + R+
Sbjct: 27  INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86
Query: 76  LGVCPQYNALFDKLTVEEHMWFYSQLKQVP----KDLAQLEISNMIVDLGIPHKRTSLAN 131
             V  QY+ L    +V E +    Q+ + P    +D   L+      D     +R     
Sbjct: 87  RAVMRQYSELAFPFSVSEVI----QMGRAPYGGSQDRQALQQVMAQTDCLALAQRDY--R 140
Query: 132 TLSGGMQRKLSVAMAFI------GGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKGRT 183
            LSGG Q+++ +A             R + LDEPTS +D Y ++    LL  +  ++   
Sbjct: 141 VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLA 200
Query: 184 VILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221
           V    H ++ A L  DRI ++A GKL  CG+   + N+
Sbjct: 201 VCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNA 238

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 94/193 (48%), Gaps = 9/193 (4%)
Query: 29  ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALFD 87
           +T+ +G +G+GK+T +S+L+ +   +SGT  +  HDIR  +   +R  +G   Q   LF 
Sbjct: 372 VTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS 431
Query: 88  KLTVEEHMWFYSQLKQVPKDLAQ--LEISNMIVDL-GIPHKRTSLANT----LSGGMQRK 140
               E   +       V  +  Q   E++N +  +   P    ++       LSGG +++
Sbjct: 432 CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQR 491
Query: 141 LSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDR 200
           +++A A +   + ++LDE TS +D  +   + E L +   GRTV++  H +       + 
Sbjct: 492 IAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIK-NANM 550
Query: 201 IAIIAAGKLQCCG 213
           +A++  GK+   G
Sbjct: 551 VAVLDQGKITEYG 563

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 114/234 (48%), Gaps = 35/234 (14%)
Query: 1   MAIQNLSKRFPNGK---LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
           + ++N++K +  G+    A+  +N+N  E +  S  G +G+GK+T ++++  +   + G 
Sbjct: 2   IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEG- 60
Query: 58  AKIYNHDIRT------DMTTIRR-SLGVCPQYNALFDKLTVEEHMWF------------Y 98
            ++Y  +I+T      ++T IRR  +G   Q   L   LT  E++               
Sbjct: 61  -EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGE 119
Query: 99  SQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158
            + K+  + L   E+     +    HK     N LSGG Q+++++A A       ++ DE
Sbjct: 120 ERRKRALECLKXAELEERFAN----HK----PNQLSGGQQQRVAIARALANNPPIILADE 171
Query: 159 PTSGVDPYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
           PT  +D  +   I +LL K  +  G+TV++ TH ++ A   G+RI  +  G+++
Sbjct: 172 PTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVE 224

>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 21/207 (10%)
Query: 4   QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
           +N+ K F   K A++G++++  +  +T  +G NG+GK+T I+++ G L    G     N 
Sbjct: 11  ENIVKYFGEFK-ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENK 69
Query: 64  DIRTDMTTIRRSLGVCPQYNA--LFDKLTVEEHM--------------WFYSQLKQVPKD 107
           DI           G+   +       ++TV E++               FY   K +PK+
Sbjct: 70  DITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYK--KWIPKE 127
Query: 108 LAQLEISNMIVD-LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
              +E +  I++ L + H     A  LSGG  + + +  A +   + +++DEP +GV P 
Sbjct: 128 EEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPG 187
Query: 167 SRRSIWELLIKYK-KGRTVILTTHYMD 192
               I+  +++ K KG T ++  H +D
Sbjct: 188 LAHDIFNHVLELKAKGITFLIIEHRLD 214

>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 21/207 (10%)
Query: 4   QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
           +N+ K F   K A++G++++  +  +T  +G NG+GK+T I+++ G L    G     N 
Sbjct: 11  ENIVKYFGEFK-ALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENK 69
Query: 64  DIRTDMTTIRRSLGVCPQYNA--LFDKLTVEEHM--------------WFYSQLKQVPKD 107
           DI           G+   +       ++TV E++               FY   K +PK+
Sbjct: 70  DITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYK--KWIPKE 127
Query: 108 LAQLEISNMIVD-LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
              +E +  I++ L + H     A  LSGG  + + +  A +   + +++DEP +GV P 
Sbjct: 128 EEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPG 187
Query: 167 SRRSIWELLIKYK-KGRTVILTTHYMD 192
               I+  +++ K KG T ++  H +D
Sbjct: 188 LAHDIFNHVLELKAKGITFLIIEHRLD 214

>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 102/209 (48%), Gaps = 10/209 (4%)
Query: 28  QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR-TDMTTIRRSLGVCPQYNALF 86
           Q  + +G  G+GKTT +++LM    V  G   +   DIR    +++R S+G+  Q   LF
Sbjct: 382 QKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILF 441
Query: 87  DKLTVEEHMWFYS--QLKQVPKDLAQLEISNMIVDLGIPHKRTSLANT---LSGGMQRKL 141
              TV+E++ + +     +  K+ A+L  S+  +        T L +    LS G ++ L
Sbjct: 442 ST-TVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLL 500
Query: 142 SVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRI 201
           ++  AF+   + +ILDE TS VD  + +SI   + K  +G+T I+  H ++      D I
Sbjct: 501 AITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIK-NADLI 559
Query: 202 AIIAAGKLQCCGSSVFLKNSFARGYYLSL 230
            ++  G++   G    L     RG+Y  L
Sbjct: 560 IVLRDGEIVEMGKHDELIQK--RGFYYEL 586

>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 6/214 (2%)
Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           + I +LSK F N  + +N ++++    +I   +G +G GKTT +  L G     SG   +
Sbjct: 5   LHIGHLSKSFQNTPV-LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISL 63
Query: 61  YNHDI---RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI 117
               I    T++    R LG   Q   LF  LTV  ++ +     +      +  I  M+
Sbjct: 64  SGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAML 123
Query: 118 VDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK 177
              GI        + LSGG Q++ ++A A       ++LDEP S +D   RR I E +I 
Sbjct: 124 ELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIA 183
Query: 178 YKK--GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
             +  G++ +  +H  +EA    DRIA++  G++
Sbjct: 184 ALRANGKSAVFVSHDREEALQYADRIAVMKQGRI 217

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 115/234 (49%), Gaps = 35/234 (14%)
Query: 1   MAIQNLSKRFPNGK---LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
           + ++N++K +  G+    A+  +N+N  E +  S +G +G+GK+T ++++  +   + G 
Sbjct: 2   IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG- 60
Query: 58  AKIYNHDIRT------DMTTIRR-SLGVCPQYNALFDKLTVEEH------------MWFY 98
            ++Y  +I+T      ++T IRR  +G   Q   L   LT  E+            M   
Sbjct: 61  -EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 99  SQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158
            + K+  + L   E+     +    HK     N LSGG Q+++++A A       ++ D+
Sbjct: 120 ERRKRALECLKMAELEERFAN----HK----PNQLSGGQQQRVAIARALANNPPIILADQ 171
Query: 159 PTSGVDPYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
           PT  +D  +   I +LL K  +  G+TV++ TH ++ A   G+RI  +  G+++
Sbjct: 172 PTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVAR-FGERIIYLKDGEVE 224

>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 105/228 (46%), Gaps = 21/228 (9%)
Query: 4   QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
           +N+ K F   K A++G++++  +  +T  +G NG+GK+T I+++ G L    G     N 
Sbjct: 11  ENIVKYFGEFK-ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENK 69
Query: 64  DIRTDMTTIRRSLGVCPQYNA--LFDKLTVEEHM--------------WFYSQLKQVPKD 107
           DI           G+   +       ++TV E++               FY   K +PK+
Sbjct: 70  DITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYK--KWIPKE 127
Query: 108 LAQLEISNMIVD-LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
              +E +  I++ L + H     A  LSGG  + + +  A +   + +++D+P +GV P 
Sbjct: 128 EEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPG 187
Query: 167 SRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213
               I+  +++ K KG T ++  H +D      D + ++  G++   G
Sbjct: 188 LAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 115/234 (49%), Gaps = 35/234 (14%)
Query: 1   MAIQNLSKRFPNGK---LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
           + ++N++K +  G+    A+  +N+N  E +  S +G +G+GK+T ++++  +   + G 
Sbjct: 2   VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG- 60
Query: 58  AKIYNHDIRT------DMTTIRR-SLGVCPQYNALFDKLTVEEH------------MWFY 98
            ++Y  +I+T      ++T IRR  +G   Q   L   LT  E+            M   
Sbjct: 61  -EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 99  SQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158
            + K+  + L   E+     +    HK     N LSGG Q+++++A A       ++ D+
Sbjct: 120 ERRKRALECLKMAELEERFAN----HK----PNQLSGGQQQRVAIARALANNPPIILADQ 171
Query: 159 PTSGVDPYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
           PT  +D  +   I +LL K  +  G+TV++ TH ++ A   G+RI  +  G+++
Sbjct: 172 PTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVAR-FGERIIYLKDGEVE 224

>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 107/217 (49%), Gaps = 29/217 (13%)
Query: 16  AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP----VSSGTAKIYNHDIRT---- 67
           A +G++++  E+ +T+ +G + +GK+T I  +   LP    + SG       D+ T    
Sbjct: 23  AADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREE 82
Query: 68  DMTTIR-RSLGVCPQ--YNALFDKLTVEEHM----------WFYSQLKQVPKDLAQLEIS 114
           ++  IR + + + PQ    +L   + V EH           W +S+L  + K   +L + 
Sbjct: 83  ELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSEL--IEKASEKLRM- 139
Query: 115 NMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
              V L       S    LSGGM++++ +A+A +     +ILDEPTS +D  ++  I +L
Sbjct: 140 ---VRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQL 196
Query: 175 LIKYKKGR--TVILTTHYMDEADLLGDRIAIIAAGKL 209
           L + KK    T+I  TH +  A  L D++A+I  G L
Sbjct: 197 LKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNL 233

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 107/214 (50%), Gaps = 14/214 (6%)
Query: 4   QNLSKRFPNGKL-AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           +N++  +P   + A+  +N+     +  + +G +G+GK+T  S++     +  G   +  
Sbjct: 345 RNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDG 404
Query: 63  HDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG 121
           HD+R   + ++R  + +  Q   LF+  TV  ++  Y++ +Q  ++  + E + M   + 
Sbjct: 405 HDLREYTLASLRNQVALVSQNVHLFND-TVANNIA-YARTEQYSREQIE-EAARMAYAMD 461
Query: 122 IPHKRTSLANT--------LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
             +K  +  +T        LSGG ++++++A A +  S  +ILDE TS +D  S R+I  
Sbjct: 462 FINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 521
Query: 174 LLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAG 207
            L + +K RT ++  H +   +   D I ++  G
Sbjct: 522 ALDELQKNRTSLVIAHRLSTIE-KADEIVVVEDG 554

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 97/197 (49%), Gaps = 10/197 (5%)
Query: 8   KRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT 67
           K+   G   + G++++  + +  S +G +G+GK+T + +L G+L   +   K++      
Sbjct: 11  KKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPT-EGKVFLEGKEV 68
Query: 68  DMTTIR-------RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
           D T  +       R LG   Q++ L  +LT  E++         PK  A+     ++ +L
Sbjct: 69  DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSEL 128
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
           G+  K +     LSGG Q+++++A A       +  DEPT  +D  + + + ++ +K  +
Sbjct: 129 GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188
Query: 181 GRT-VILTTHYMDEADL 196
           G T +++ TH  + A+L
Sbjct: 189 GGTSIVMVTHERELAEL 205

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 109/217 (50%), Gaps = 14/217 (6%)
Query: 1   MAIQNLSKRFPNGKL-AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           +  +N++  +P  ++ A+  +N+     +  + +G +G+GK+T  S++     +  G   
Sbjct: 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401
Query: 60  IYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIV 118
           +  HD+R   + ++R  + +  Q   LF+  TV  ++  Y++ ++  ++  + E + M  
Sbjct: 402 MDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIA-YARTEEYSREQIE-EAARMAY 458
Query: 119 DLGIPHKRTSLANT--------LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
            +   +K  +  +T        LSGG ++++++A A +  S  +ILDE TS +D  S R+
Sbjct: 459 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 518
Query: 171 IWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAG 207
           I   L + +K RT ++  H +   +   D I ++  G
Sbjct: 519 IQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDG 554

>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 23/206 (11%)
Query: 17  VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSL 76
           +NG+  +  E  + + +G  G GK++ +S L+  +       K+  H        I+ S+
Sbjct: 21  LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD------KVEGH------VAIKGSV 68
Query: 77  GVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI--PHKRTSLAN--- 131
              PQ  A     ++ E++ F  QL++ P   + ++   ++ DL I     RT +     
Sbjct: 69  AYVPQ-QAWIQNDSLRENILFGCQLEE-PYYRSVIQACALLPDLEILPSGDRTEIGEKGV 126
Query: 132 TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK---KGRTVILTT 188
            LSGG ++++S+A A    +   + D+P S VD +  + I+E +I  K   K +T IL T
Sbjct: 127 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVT 186
Query: 189 HYMDEADLLGDRIAIIAAGKLQCCGS 214
           H M     + D I +++ GK+   GS
Sbjct: 187 HSMSYLPQV-DVIIVMSGGKISEMGS 211

>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 99/222 (44%), Gaps = 21/222 (9%)
Query: 8   KRF--PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI 65
           +RF   N  L VNG  V          LG NG+GKTT +  + G+LP  SG   I   ++
Sbjct: 17  ERFSLENINLEVNGEKV--------IILGPNGSGKTTLLRAISGLLPY-SGNIFINGMEV 67
Query: 66  RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK 125
           R     IR S  +   Y      +TV + ++ Y +LK + +DL  LE+   +  LG    
Sbjct: 68  RKIRNYIRYSTNLPEAYEI---GVTVNDIVYLYEELKGLDRDLF-LEMLKAL-KLGEEIL 122
Query: 126 RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVI 185
           R  L   LS G    +  ++A       V LDEP   VD   R  I   + +Y  G+  I
Sbjct: 123 RRKLYK-LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY--GKEGI 179
Query: 186 LTTHYMDEADLLGDRIAIIAAG-KLQCCGS-SVFLKNSFARG 225
           L TH +D  +L  +  A    G +LQ   S S  L++S   G
Sbjct: 180 LVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEG 221

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 92/180 (51%), Gaps = 12/180 (6%)
Query: 21  NVNFY--EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI-RTDMTTIRRSLG 77
           ++NF+       + +GH G+GK+T I+ L+     + G  KI   ++ + +  +IR  +G
Sbjct: 38  SINFFIPSGTTCALVGHTGSGKST-IAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIG 96
Query: 78  VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL--GIPHKRTSLANT--- 132
           + PQ   LF++ T++ ++  Y +L    +++ +   S  + D    +P K  ++      
Sbjct: 97  IVPQDTILFNE-TIKYNI-LYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGM 154
Query: 133 -LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYM 191
            LSGG ++++++A   +   + VI DE TS +D  +     + +   +K RT+I+  H +
Sbjct: 155 KLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRL 214

>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 101/215 (46%), Gaps = 28/215 (13%)
Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           ++++NL   +         LN +  +  I + LG NG GK+T + +L+G+     G  ++
Sbjct: 5   LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV 64
Query: 61  YNHDIRTDMTTIRRSLGVCPQY------NALFDKLTV--EEHMWFYSQLKQVPKDLAQLE 112
           Y            +S+G  PQ+       ++ D + +    H+  +++    PK     +
Sbjct: 65  Y------------QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAK----PKS-HDYQ 107
Query: 113 ISNMIVD-LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI 171
           ++   +D L + H       +LSGG ++ + +A A     + ++LDEPTS +D  ++  +
Sbjct: 108 VAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIV 167
Query: 172 WELLIKYKKGR--TVILTTHYMDEADLLGDRIAII 204
             LLI   + +  TV+ TTH  ++   + ++  ++
Sbjct: 168 LSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLL 202

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 12/204 (5%)
Query: 3   IQNLSKRFPNGK--LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
            Q++S  +PN      + GL    Y  ++T+ +G NG+GK+T  ++L  +   + G   +
Sbjct: 19  FQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLL 78
Query: 61  YNHD-IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
                ++ D   +   +    Q   LF + +  E++ +        +++  + + +   D
Sbjct: 79  DGEPLVQYDHHYLHTQVAAVGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHD 137
Query: 120 L--GIPH----KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
              G P     +     N LSGG ++ +++A A I   R +ILD+ TS +D  ++  +  
Sbjct: 138 FISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQR 197
Query: 174 LLIKYKK--GRTVILTTHYMDEAD 195
           LL +  +   RTV+L TH +  A+
Sbjct: 198 LLYESPEWASRTVLLITHQLSLAE 221

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 9/194 (4%)
Query: 27  DQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI-RTDMTTIRRSLGVCPQYNAL 85
           + I +F G +G GK+T  S+L      ++G   I    I    +   R  +G   Q +A+
Sbjct: 28  NSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAI 87
Query: 86  FDKLTVEEHMWFYSQLKQVPKDLAQ---LEISNMIVDLGIPHKRTSLAN---TLSGGMQR 139
               T+ E++ +  +     +DL Q   L  +   V+       T +      +SGG ++
Sbjct: 88  MAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQ 146
Query: 140 KLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGD 199
           +L++A AF+   + ++LDE T+ +D  S   + + L    KGRT ++  H +    +  D
Sbjct: 147 RLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTI-VDAD 205
Query: 200 RIAIIAAGKLQCCG 213
           +I  I  G++   G
Sbjct: 206 KIYFIEKGQITGSG 219

>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 12/204 (5%)
Query: 3   IQNLSKRFPNGK--LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
            Q++S  +PN      + GL    Y  ++T+ +G NG+GK+T  ++L  +   + G   +
Sbjct: 19  FQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLL 78
Query: 61  YNHD-IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
                ++ D   +   +    Q   LF + +  E++ +        +++  + + +   D
Sbjct: 79  DGEPLVQYDHHYLHTQVAAVGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHD 137
Query: 120 L--GIPH----KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
              G P     +     N LSGG ++ +++A A I   R +ILD  TS +D  ++  +  
Sbjct: 138 FISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQR 197
Query: 174 LLIKYKK--GRTVILTTHYMDEAD 195
           LL +  +   RTV+L T  +  A+
Sbjct: 198 LLYESPEWASRTVLLITQQLSLAE 221

>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 36/234 (15%)
Query: 1   MAIQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           + ++N++  +  G   V   +N      Q+ +  G  GAGKT+ + M+MG L  S G  K
Sbjct: 19  VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 78
Query: 60  IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWF---YSQLK--------QVPKDL 108
              H  R         +  C Q++ +    T++E++ F   Y + +        Q+ +D+
Sbjct: 79  ---HSGR---------ISFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDI 125
Query: 109 AQL-EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS 167
           ++  E  N+++  G          TLSGG + ++S+A A    +   +LD P   +D  +
Sbjct: 126 SKFAEKDNIVLGEG--------GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 177
Query: 168 RRSIWE-LLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220
            + I+E  + K    +T IL T  M+      D+I I+  G     G+   L+N
Sbjct: 178 EKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 230

>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 36/234 (15%)
Query: 1   MAIQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           + ++N++  +  G   V   +N      Q+ +  G  GAGKT+ + M+MG L  S G  K
Sbjct: 7   VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 66
Query: 60  IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWF---YSQLK--------QVPKDL 108
              H  R         +  C Q++ +    T++E++ F   Y + +        Q+ +D+
Sbjct: 67  ---HSGR---------ISFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDI 113
Query: 109 AQL-EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS 167
           ++  E  N+++  G          TLSGG + ++S+A A    +   +LD P   +D  +
Sbjct: 114 SKFAEKDNIVLGEG--------GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 165
Query: 168 RRSIWE-LLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220
            + I+E  + K    +T IL T  M+      D+I I+  G     G+   L+N
Sbjct: 166 EKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 218

>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 103/238 (43%), Gaps = 31/238 (13%)
Query: 26  EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSL-GVCPQY-- 82
           E +I   LG NG GKTT   +L+G +    G+       +      I  +  G   QY  
Sbjct: 293 EGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLE 352
Query: 83  NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLS 142
           NA  D L+     WF+ ++ +      +L +  ++          S  N LSGG  +KL 
Sbjct: 353 NASKDALSTSS--WFFEEVTK------RLNLHRLL---------ESNVNDLSGGELQKLY 395
Query: 143 VAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVI--LTTHYMDEADLLGDR 200
           +A      +   +LD+P+S +D   R  + + + +  + R  +  +  H +   D + DR
Sbjct: 396 IAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADR 455
Query: 201 IAIIAAGKLQCCG---SSVFLK---NSFARGYYLSL--DMKSAQLQAEDIGLDGDRIR 250
           I I+  G+ +  G   S V LK   N F R   ++   D ++ + +   IG   DR++
Sbjct: 456 I-IVFKGEPEKAGLATSPVTLKTGMNEFLRELEVTFRRDAETGRPRVNKIGSYLDRVQ 512

>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 105/223 (47%), Gaps = 13/223 (5%)
Query: 3   IQNLSKRFPNGK--LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
            Q++S  +PN    L + GL       ++T+ +G NG+GK+T  ++L  +   + G   +
Sbjct: 17  FQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLL 76
Query: 61  YNHDI-RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
               + + +   + R +    Q   +F + +++E++ +    K   +++    + +    
Sbjct: 77  DGKPLPQYEHRYLHRQVAAVGQEPQVFGR-SLQENIAYGLTQKPTMEEITAAAVKSGAHS 135
Query: 120 L--GIPH----KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
              G+P     +     + LSGG ++ +++A A I     +ILD+ TS +D  S+  + +
Sbjct: 136 FISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQ 195
Query: 174 LLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           LL +  +   R+V+L T ++   +   D I  +  G ++  G+
Sbjct: 196 LLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAIREGGT 237

>pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 35/221 (15%)
Query: 13  GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72
           G   +  +N      Q+ +  G  GAGKT+ + M+MG L  S G  K   H  R      
Sbjct: 50  GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK---HSGR------ 100
Query: 73  RRSLGVCPQYNALFDKLTVEEHMWF---YSQLK--------QVPKDLAQL-EISNMIVDL 120
              +  C Q++ +    T++E++ F   Y + +        Q+ +D+++  E  N+++  
Sbjct: 101 ---ISFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 156
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE-LLIKYK 179
           G          TLS G Q K+S+A A    +   +LD P   +D  + + I+E  + K  
Sbjct: 157 G--------GITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 208
Query: 180 KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220
             +T IL T  M+      D+I I+  G     G+   L+N
Sbjct: 209 ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 248

>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 13/147 (8%)
Query: 34  GHNGAGKTTTISMLMGMLPVSSGTAKIYNH---DIRTDMTTIRRSLGVCPQYNALFDKLT 90
           G NGAGKTT +++L    P +SGT  ++      +     T+R+ +G     ++L +K  
Sbjct: 54  GLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETVRQHIGFVS--HSLLEKFQ 111
Query: 91  VEEHM-------WFYS-QLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLS 142
             E +        F S  + Q   D  + E   ++  +G   K       LS G ++++ 
Sbjct: 112 EGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAKAQQYIGYLSTGEKQRVX 171
Query: 143 VAMAFIGGSRTVILDEPTSGVDPYSRR 169
           +A A  G  + +ILDEP +G+D  +R 
Sbjct: 172 IARALXGQPQVLILDEPAAGLDFIARE 198

>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 105/233 (45%), Gaps = 35/233 (15%)
Query: 1   MAIQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           + ++N++  +  G   V   +N      Q+ +  G  GAGKT+ + M+MG L  S G  K
Sbjct: 7   VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 66
Query: 60  IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMW--------FYSQLK--QVPKDLA 109
              H  R         +  C Q++ +    T++E++         + S +K  Q+ +D++
Sbjct: 67  ---HSGR---------ISFCSQFSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDIS 113
Query: 110 QL-EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR 168
           +  E  N+++  G          TLSGG + ++S+A A    +   +LD P   +D  + 
Sbjct: 114 KFAEKDNIVLGEG--------GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 165
Query: 169 RSIWE-LLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220
           + I+E  + K    +T IL T  M+      D+I I+  G     G+   L+N
Sbjct: 166 KEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 217

>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 94/208 (45%), Gaps = 35/208 (16%)
Query: 13  GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72
           G   +  +N+N  + ++ +  G  G+GKT+ + +++G L  S G   I  H  R      
Sbjct: 50  GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG---IIKHSGR------ 100
Query: 73  RRSLGVCPQYNALFDKLTVEEHMWF---YSQLK--------QVPKDLAQL-EISNMIVDL 120
              +  C Q++ +    T++E++ F   Y + +        Q+ +D+ +  E  N ++  
Sbjct: 101 ---VSFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGE 156
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE-LLIKYK 179
           G          TLSGG + ++S+A A    +   +LD P   +D ++   ++E  + K  
Sbjct: 157 G--------GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM 208
Query: 180 KGRTVILTTHYMDEADLLGDRIAIIAAG 207
             +T IL T  M+      D+I I+  G
Sbjct: 209 ANKTRILVTSKMEHLR-KADKILILHQG 235

>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 94/208 (45%), Gaps = 35/208 (16%)
Query: 13  GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72
           G   +  +N+N  + ++ +  G  G+GKT+ + +++G L  S G   I  H  R      
Sbjct: 50  GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG---IIKHSGR------ 100
Query: 73  RRSLGVCPQYNALFDKLTVEEHMWF---YSQLK--------QVPKDLAQL-EISNMIVDL 120
              +  C Q++ +    T++E++ F   Y + +        Q+ +D+ +  E  N ++  
Sbjct: 101 ---VSFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGE 156
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE-LLIKYK 179
           G          TLSGG + ++S+A A    +   +LD P   +D ++   ++E  + K  
Sbjct: 157 G--------GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM 208
Query: 180 KGRTVILTTHYMDEADLLGDRIAIIAAG 207
             +T IL T  M+      D+I I+  G
Sbjct: 209 ANKTRILVTSKMEHLR-KADKILILHQG 235

>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 34/220 (15%)
Query: 13  GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72
           G   +  +N      Q+ +  G  GAGKT+ + M+MG L  S G  K   H  R      
Sbjct: 50  GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK---HSGR------ 100
Query: 73  RRSLGVCPQYNALFDKLTVEEHMW--------FYSQLK--QVPKDLAQL-EISNMIVDLG 121
              +  C Q++ +    T++E++         + S +K  Q+ +D+++  E  N+++  G
Sbjct: 101 ---ISFCSQFSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 156
Query: 122 IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE-LLIKYKK 180
                     TLS G Q K+S+A A    +   +LD P   +D  + + I+E  + K   
Sbjct: 157 --------GITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 208
Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220
            +T IL T  M+      D+I I+  G     G+   L+N
Sbjct: 209 NKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 247

>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 92/204 (45%), Gaps = 12/204 (5%)
Query: 3   IQNLSKRFPNGK--LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
            Q++S  +PN      + GL    Y  ++T+ +G NG+GK+T  ++L  +   + G   +
Sbjct: 19  FQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLL 78
Query: 61  YNHD-IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
                ++ D   +   +    Q   LF + +  E++ +        +++  + + +   D
Sbjct: 79  DGEPLVQYDHHYLHTQVAAVGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHD 137
Query: 120 L--GIPH----KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
              G P     +     N L+ G ++ +++A A I   R +ILD  TS +D  ++  +  
Sbjct: 138 FISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQR 197
Query: 174 LLIKYKK--GRTVILTTHYMDEAD 195
           LL +  +   RTV+L T  +  A+
Sbjct: 198 LLYESPEWASRTVLLITQQLSLAE 221

>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 35/221 (15%)
Query: 13  GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72
           G   +  +N      Q+ +  G  GAGKT+ + M+MG L  S G  K   H  R      
Sbjct: 50  GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK---HSGR------ 100
Query: 73  RRSLGVCPQYNALFDKLTVEEHMW---------FYSQLK--QVPKDLAQL-EISNMIVDL 120
              +  C Q++ +    T++E++          + S +K  Q+ +D+++  E  N+++  
Sbjct: 101 ---ISFCSQFSWIMPG-TIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 156
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE-LLIKYK 179
           G          TLSGG + ++S+A A    +   +LD P   +D  + + I+E  + K  
Sbjct: 157 G--------GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 208
Query: 180 KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220
             +T IL T  M+      D+I I+  G     G+   L+N
Sbjct: 209 ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 248

>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 91/212 (42%), Gaps = 32/212 (15%)
Query: 5   NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD 64
           N  ++   G + VNG N+N   D+                           G  K+ +  
Sbjct: 53  NFLEKPSEGAIIVNGQNINLVRDK--------------------------DGQLKVAD-- 84
Query: 65  IRTDMTTIRRSLGVCPQYNALFDKLTVEEH-MWFYSQLKQVPKDLAQLEISNMIVDLGIP 123
            +  +  +R  L +  Q+  L+  +TV E+ M    Q+  + K  A+      +  +GI 
Sbjct: 85  -KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID 143
Query: 124 HK-RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKG 181
            + +      LSGG Q+++S+A A       ++ DEPTS +DP     +  ++ +  ++G
Sbjct: 144 ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEG 203
Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213
           +T+++ TH M  A  +   +  +  GK++  G
Sbjct: 204 KTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235

>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 34/220 (15%)
Query: 13  GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72
           G   +  +N      Q+ +  G  GAGKT+ + M+MG L  S G  K   H  R      
Sbjct: 50  GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK---HSGR------ 100
Query: 73  RRSLGVCPQYNALFDKLTVEEHMW--------FYSQLK--QVPKDLAQL-EISNMIVDLG 121
              +  C Q N+     T++E++         + S +K  Q+ +D+++  E  N+++  G
Sbjct: 101 ---ISFCSQ-NSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 156
Query: 122 IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE-LLIKYKK 180
                     TLSGG + ++S+A A    +   +LD P   +D  + + I+E  + K   
Sbjct: 157 --------GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 208
Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220
            +T IL T  M+      D+I I+  G     G+   L+N
Sbjct: 209 NKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 247

>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 34/220 (15%)
Query: 13  GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72
           G   +  +N      Q+ +  G  GAGKT+ + M+MG L  S G  K   H  R      
Sbjct: 50  GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK---HSGR------ 100
Query: 73  RRSLGVCPQYNALFDKLTVEEHM--------WFYSQLK--QVPKDLAQL-EISNMIVDLG 121
              +  C Q N+     T++E++         + S +K  Q+ +D+++  E  N+++  G
Sbjct: 101 ---ISFCSQ-NSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 156
Query: 122 IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE-LLIKYKK 180
                     TLSGG + ++S+A A    +   +LD P   +D  + + I+E  + K   
Sbjct: 157 --------GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 208
Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220
            +T IL T  M+      D+I I+  G     G+   L+N
Sbjct: 209 NKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 247

>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 103/231 (44%), Gaps = 39/231 (16%)
Query: 1   MAIQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           M +++L+ ++  G  A+   ++ +    Q    LG  G+GK+T +S  + +L   +   +
Sbjct: 20  MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGE 76
Query: 60  IYNHDIRTDMTTI---RRSLGVCPQYNALF----------DKLTVEEHMW-------FYS 99
           I    +  D  T+   R++ GV PQ   +F          +    ++ +W         S
Sbjct: 77  IQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRS 136
Query: 100 QLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP 159
            ++Q P  L       ++VD G           LS G ++ + +A + +  ++ ++LDEP
Sbjct: 137 VIEQFPGKL-----DFVLVDGGC---------VLSHGHKQLMCLARSVLSKAKILLLDEP 182
Query: 160 TSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
           ++ +DP + + I   L +     TVIL    + EA L  D+  +I   K++
Sbjct: 183 SAHLDPVTYQIIRRTLKQAFADCTVILCEARI-EAMLECDQFLVIEENKVR 232

>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 94/207 (45%), Gaps = 34/207 (16%)
Query: 13  GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72
           G   +  +N+N  + ++ +  G  G+GKT+ + +++G L  S G   I  H  R      
Sbjct: 50  GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG---IIKHSGR------ 100
Query: 73  RRSLGVCPQYNALFDKLTVEEHMW--------FYSQLK--QVPKDLAQL-EISNMIVDLG 121
              +  C Q++ +    T++E++         + S +K  Q+ +D+ +  E  N ++  G
Sbjct: 101 ---VSFCSQFSWIMPG-TIKENIIGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG 156
Query: 122 IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE-LLIKYKK 180
                     TLSGG + ++S+A A    +   +LD P   +D ++   ++E  + K   
Sbjct: 157 --------GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA 208
Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAG 207
            +T IL T  M+      D+I I+  G
Sbjct: 209 NKTRILVTSKMEHLR-KADKILILHQG 234

>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 94/208 (45%), Gaps = 35/208 (16%)
Query: 13  GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72
           G   +  +N+N  + ++ +  G  G+GKT+ + +++G L  S G   I  H  R      
Sbjct: 50  GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG---IIKHSGR------ 100
Query: 73  RRSLGVCPQYNALFDKLTVEEHMW---------FYSQLK--QVPKDLAQL-EISNMIVDL 120
              +  C Q++ +    T++E++          + S +K  Q+ +D+ +  E  N ++  
Sbjct: 101 ---VSFCSQFSWIMPG-TIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGE 156
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE-LLIKYK 179
           G          TLSGG + ++S+A A    +   +LD P   +D ++   ++E  + K  
Sbjct: 157 G--------GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM 208
Query: 180 KGRTVILTTHYMDEADLLGDRIAIIAAG 207
             +T IL T  M+      D+I I+  G
Sbjct: 209 ANKTRILVTSKMEHLR-KADKILILHQG 235

>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 94/208 (45%), Gaps = 35/208 (16%)
Query: 13  GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72
           G   +  +N+N  + ++ +  G  G+GKT+ + +++G L  S G   I  H  R      
Sbjct: 50  GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG---IIKHSGR------ 100
Query: 73  RRSLGVCPQYNALFDKLTVEEHMW---------FYSQLK--QVPKDLAQL-EISNMIVDL 120
              +  C Q++ +    T++E++          + S +K  Q+ +D+ +  E  N ++  
Sbjct: 101 ---VSFCSQFSWIMPG-TIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGE 156
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE-LLIKYK 179
           G          TLSGG + ++S+A A    +   +LD P   +D ++   ++E  + K  
Sbjct: 157 G--------GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM 208
Query: 180 KGRTVILTTHYMDEADLLGDRIAIIAAG 207
             +T IL T  M+      D+I I+  G
Sbjct: 209 ANKTRILVTSKMEHLR-KADKILILHQG 235

>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 80/183 (43%), Gaps = 26/183 (14%)
Query: 28  QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD 87
           ++   +G NG GKTT + ML G+   + G        +  D+T   +     PQY     
Sbjct: 369 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGK-------VEWDLTVAYK-----PQY----- 411
Query: 88  KLTVEEHMWFYSQLKQV--PKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAM 145
            +  E     Y  L ++   K  +    + ++  LGI          LSGG  +++++A 
Sbjct: 412 -IKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAA 470
Query: 146 AFIGGSRTVILDEPTSGVDPYSR----RSIWELLIKYKKGRTVILTTHYMDEADLLGDRI 201
             +  +   +LDEP++ +D   R    R+I  L+ K +K  T ++  H +   D + DR+
Sbjct: 471 TLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK--TALVVEHDVLMIDYVSDRL 528
Query: 202 AII 204
            + 
Sbjct: 529 IVF 531

>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/228 (20%), Positives = 98/228 (42%), Gaps = 15/228 (6%)
Query: 14  KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM--LPVSSGTAKIYNHDIRTDMTT 71
           K  + GL+++ +  ++ + +G NG+GK+T  + L G     V+ GT +    D+      
Sbjct: 33  KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPE 92
Query: 72  IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-----PKDLAQLEISNMIVD----LGI 122
            R   G+   +    +   V    +  + L  V      + L + +  +++ +    L +
Sbjct: 93  DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKM 152
Query: 123 PHK--RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
           P      S+    SGG +++  +    +      ILDE  SG+D  + + + + +   + 
Sbjct: 153 PEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD 212
Query: 181 G-RTVILTTHYMDEADLLG-DRIAIIAAGKLQCCGSSVFLKNSFARGY 226
           G R+ I+ THY    D +  D + ++  G++   G    +K    +GY
Sbjct: 213 GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGY 260

>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/228 (20%), Positives = 98/228 (42%), Gaps = 15/228 (6%)
Query: 14  KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM--LPVSSGTAKIYNHDIRTDMTT 71
           K  + GL+++ +  ++ + +G NG+GK+T  + L G     V+ GT +    D+      
Sbjct: 14  KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPE 73
Query: 72  IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-----PKDLAQLEISNMIVD----LGI 122
            R   G+   +    +   V    +  + L  V      + L + +  +++ +    L +
Sbjct: 74  DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKM 133
Query: 123 PHK--RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
           P      S+    SGG +++  +    +      ILDE  SG+D  + + + + +   + 
Sbjct: 134 PEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD 193
Query: 181 G-RTVILTTHYMDEADLLG-DRIAIIAAGKLQCCGSSVFLKNSFARGY 226
           G R+ I+ THY    D +  D + ++  G++   G    +K    +GY
Sbjct: 194 GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGY 241

>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 80/183 (43%), Gaps = 26/183 (14%)
Query: 28  QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD 87
           ++   +G NG GKTT + ML G+   + G        +  D+T   +     PQY     
Sbjct: 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGK-------VEWDLTVAYK-----PQY----- 425
Query: 88  KLTVEEHMWFYSQLKQV--PKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAM 145
            +  E     Y  L ++   K  +    + ++  LGI          LSGG  +++++A 
Sbjct: 426 -IKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAA 484
Query: 146 AFIGGSRTVILDEPTSGVDPYSR----RSIWELLIKYKKGRTVILTTHYMDEADLLGDRI 201
             +  +   +LDEP++ +D   R    R+I  L+ K +K  T ++  H +   D + DR+
Sbjct: 485 TLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK--TALVVEHDVLMIDYVSDRL 542
Query: 202 AII 204
            + 
Sbjct: 543 IVF 545

>pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 99/228 (43%), Gaps = 42/228 (18%)
Query: 26  EDQITSFLGHNGAGKTTTISMLMGML-PVSSGTAKIYNHDIRT----DMTTIRRSLG--- 77
           E  +   +G NG GK+T + +L G L P   G    ++  IR     ++      L    
Sbjct: 46  EGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGE 105
Query: 78  ----VCPQYNALFDKLT---VEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLA 130
               V PQY  L  K     V E +    +  ++ + +  LE+ N +++  I H      
Sbjct: 106 IRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELEN-VLEREIQH------ 158
Query: 131 NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR----RSIWELLIKYKKGRTVIL 186
             LSGG  +++++A A +  +     DEP+S +D   R    R+I  L    ++G++V++
Sbjct: 159 --LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRL---SEEGKSVLV 213
Query: 187 TTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK--------NSFARGY 226
             H +   D L D I ++  G+    G  +F +        N F RGY
Sbjct: 214 VEHDLAVLDYLSDIIHVV-YGEPGVYG--IFSQPKGTRNGINEFLRGY 258

>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 83/202 (41%), Gaps = 34/202 (16%)
Query: 12  NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTT 71
            G   +N     F + +I   +G NG GKTT I +L G L    G       DI   +  
Sbjct: 363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG------QDI-PKLNV 415
Query: 72  IRRSLGVCPQYNALFDKLTVEEHMWFYSQLK------QVPKDLAQLEISNMIVDLGIPHK 125
             +   + P++     +L       F+ +++      Q   D+ +    + I+D  + H 
Sbjct: 416 SMKPQKIAPKFPGTVRQL-------FFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQH- 467
Query: 126 RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR----RSIWELLIKYKKG 181
                  LSGG  +++++ +A    +   ++DEP++ +D   R    + I   ++  KK 
Sbjct: 468 -------LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKK- 519
Query: 182 RTVILTTHYMDEADLLGDRIAI 203
            T  +  H    A  L D++ +
Sbjct: 520 -TAFIVEHDFIMATYLADKVIV 540

>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 89  LTVEEHMWFYSQLKQVPKDLAQL-EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF 147
           +TV+E + F+  +  + + L  L ++    V LG P      A TLSGG  +++ +A   
Sbjct: 767 MTVDEALEFFKNIPSIKRTLQVLHDVGLGYVKLGQP------ATTLSGGEAQRIKLASEL 820
Query: 148 IG---GSRTVILDEPTSGVDPYSRRSIWELLIK-YKKGRTVILTTHYMD 192
                G    ILDEPT G+     R + E+L +   +G TVI+  H +D
Sbjct: 821 RKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD 869

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	251
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	8e-80
1sgw_A	214	Putative ABC transporter; structural genomics, P p	7e-66
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	1e-45
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	5e-40
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	4e-38
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	3e-36
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	6e-30
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	9e-25
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	2e-19
1g6h_A	257	High-affinity branched-chain amino acid transport	2e-24
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	8e-24
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	1e-17
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	9e-24
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	2e-23
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	1e-23
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	3e-23
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	2e-22
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	4e-17
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	1e-21
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	2e-21
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	2e-21
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	8e-21
1ji0_A	240	ABC transporter; ATP binding protein, structural g	3e-18
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	3e-18
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	7e-15
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	2e-14
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	1e-13
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	3e-14
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	3e-13
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	3e-13
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	4e-13
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	4e-13
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	1e-12
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	3e-12
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	3e-12
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	1e-11
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	3e-11
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	4e-11
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	4e-11
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	5e-11
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	9e-11
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	3e-10
2ghi_A	260	Transport protein; multidrug resistance protein, M	4e-10
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	5e-10
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	1e-09
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	3e-09
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	1e-06
1b0u_A	262	Histidine permease; ABC transporter, transport pro	2e-09
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	3e-09
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	1e-08
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	4e-07
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	2e-06
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	4e-06
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	6e-06
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	3e-05
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	4e-04
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	8e-05

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score =  239 bits (613), Expect = 8e-80
 Identities = 61/221 (27%), Positives = 111/221 (50%), Gaps = 2/221 (0%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           +++L KR    K  + G++    E +I   +G NGAGKTTT+ ++  ++  SSG   ++ 
Sbjct: 18  VKDLRKRI-GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFG 76

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
            ++  +   +R+ +   P+    +  +   E++ F +          +  +       G+
Sbjct: 77  KNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGL 136

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-G 181
             K     +T S GM RKL +A A +   R  ILDEPTSG+D  + R + ++L +  + G
Sbjct: 137 GEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 196

Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSF 222
            T+++++H M E + L DRIA+I  G +   G+   LK  +
Sbjct: 197 LTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 237

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score =  202 bits (517), Expect = 7e-66
 Identities = 38/209 (18%), Positives = 85/209 (40%), Gaps = 15/209 (7%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           I++LS  +   K  +  + +   +  + +F G NG GKTT +  +   L    G      
Sbjct: 13  IRDLSVGY--DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG 70

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
             I      ++  +   P+   +  K++VE+++   + L  V  +  + EI + +  + +
Sbjct: 71  VPIT----KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALESVEV 124

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-- 180
              +  L   LS G  R++ +A   +  +   +LD+P   +D  S+  + + +++  K  
Sbjct: 125 LDLKKKL-GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEK 183

Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           G  +I +   +       D    +     
Sbjct: 184 GIVIISSREELSYC----DVNENLHKYST 208

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score =  153 bits (388), Expect = 1e-45
 Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 13/224 (5%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           +  + +    GK  +  ++    +       G NGAGKTT +++L    P +SGT  ++ 
Sbjct: 24  LDQIGRMK-QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFG 82

Query: 63  HDI---RTDMTTIRRSLGVCPQ--YNALFDKLTVEE--HMWFYSQLK--QVPKDLAQLEI 113
                      T+R+ +G           +   V +      +  +   Q   D  + E 
Sbjct: 83  KMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEA 142

Query: 114 SNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
             ++  +G+  K       LS G ++++ +A A +G  + +ILDEP +G+D  +R S+  
Sbjct: 143 HQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLS 202

Query: 174 L---LIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           +   L        +I  TH+++E      +I ++  G+    G+
Sbjct: 203 ILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score =  138 bits (349), Expect = 5e-40
 Identities = 56/235 (23%), Positives = 96/235 (40%), Gaps = 25/235 (10%)

Query: 3   IQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           ++N+          + ++  +N+     +    LG NG+GKTT +  + G+LP  SG   
Sbjct: 4   LKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLP-YSGNIF 61

Query: 60  IYNHDIRTDMTTIRRSLGVCPQYNALFDK-LTVEEHMWFYSQLKQVPKDLAQLEISNMIV 118
           I   ++      IR  +         ++  +TV + ++ Y +LK + +D        M+ 
Sbjct: 62  INGMEV----RKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRD----LFLEMLK 113

Query: 119 DLGIPHKRTSLAN----TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
            L +  +   +       LS G    +  ++A       V LDEP   VD   R  I   
Sbjct: 114 ALKLGEE---ILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRY 170

Query: 175 LIKYKKGRTVILTTHYMDEADLLGDRIAIIAAG-KLQCCGS-SVFLKNSFARGYY 227
           + +Y K    IL TH +D  +L  +  A    G +LQ   S S  L++S   G  
Sbjct: 171 IKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEGER 223

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score =  133 bits (337), Expect = 4e-38
 Identities = 66/222 (29%), Positives = 115/222 (51%), Gaps = 14/222 (6%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           ++ L+  + +G  A+ G+N+N    ++T+ LG NG GK+T      G+L  SSG     N
Sbjct: 10  VEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDN 69

Query: 63  HDIRTD---MTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI 117
             I      +  +R S+G+  Q   N LF   +V + + F +   ++P+D  +  + N +
Sbjct: 70  KPIDYSRKGIMKLRESIGIVFQDPDNQLFSA-SVYQDVSFGAVNMKLPEDEIRKRVDNAL 128

Query: 118 VDLGIPHKRTSLANTLSGG-MQRKLSVAMAFI--GGSRTVILDEPTSGVDPYSRRSIWEL 174
              GI H +    + LS G  +R   VA+A +     + +ILDEPT+G+DP     I +L
Sbjct: 129 KRTGIEHLKDKPTHCLSFGQKKR---VAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKL 185

Query: 175 LIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           L++ +K  G T+I+ TH +D   L  D + ++  G++   G+
Sbjct: 186 LVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score =  128 bits (324), Expect = 3e-36
 Identities = 58/234 (24%), Positives = 104/234 (44%), Gaps = 33/234 (14%)

Query: 1   MAI--QNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS 54
           M I   N+S  F  G    K A+  +++   E +     G+ G+GK+T + ++ G++  +
Sbjct: 1   MRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 60

Query: 55  SGTAKIYNHDIRTDMTTIRRSLGVCPQY--NALFDKLTVEEHMWF--------YSQLKQV 104
           SG   +     R     IRR++G+  QY  +  F +  V + + F           +  V
Sbjct: 61  SGD--VLYDGERKKGYEIRRNIGIAFQYPEDQFFAE-RVFDEVAFAVKNFYPDRDPVPLV 117

Query: 105 PKDLAQLEISNMIVDLGIPHKRTSLANTLSGG-MQRKLSVAMAFI--GGSRTVILDEPTS 161
            K +  + +        +P         LSGG  +R   VA+A +       +ILDEP  
Sbjct: 118 KKAMEFVGLDFDSFKDRVPFF-------LSGGEKRR---VAIASVIVHEPDILILDEPLV 167

Query: 162 GVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           G+D   +  +  ++ K+K  G+TVIL +H ++      DR+ ++  GK    G+
Sbjct: 168 GLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT 221

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score =  111 bits (280), Expect = 6e-30
 Identities = 47/221 (21%), Positives = 94/221 (42%), Gaps = 31/221 (14%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           ++NL   +         LN +  +  I + LG NG GK+T + +L+G+     G  ++Y 
Sbjct: 7   VENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY- 65

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEE--------HMWFYSQLKQVPKDLAQLEIS 114
                      +S+G  PQ+ +     +V +        H+  +++ K     +A     
Sbjct: 66  -----------QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAM---- 110

Query: 115 NMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
             +  L + H       +LSGG ++ + +A A     + ++LDEPTS +D  ++  +  L
Sbjct: 111 QALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSL 170

Query: 175 L--IKYKKGRTVILTTHYMDEADLLGDRIA-----IIAAGK 208
           L  +   +  TV+ TTH  ++   + ++           G+
Sbjct: 171 LIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFGE 211

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score =  101 bits (253), Expect = 9e-25
 Identities = 42/202 (20%), Positives = 77/202 (38%), Gaps = 18/202 (8%)

Query: 5   NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD 64
            + K+  + +L V+  N    E +I   LG NG GKTT   +L+G +    G+       
Sbjct: 274 KIIKKLGDFQLVVD--NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGS------- 324

Query: 65  IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH 124
           +  +   +       PQ   +F         +  +  K      +      +   L +  
Sbjct: 325 VTPEKQILSYK----PQR--IFPNYDGTVQQYLENASKD-ALSTSSWFFEEVTKRLNLHR 377

Query: 125 KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK--GR 182
              S  N LSGG  +KL +A      +   +LD+P+S +D   R  + + + +  +    
Sbjct: 378 LLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKA 437

Query: 183 TVILTTHYMDEADLLGDRIAII 204
              +  H +   D + DRI + 
Sbjct: 438 VTFIIDHDLSIHDYIADRIIVF 459

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 85.8 bits (213), Expect = 2e-19
 Identities = 40/187 (21%), Positives = 77/187 (41%), Gaps = 12/187 (6%)

Query: 28  QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI---YNHDIR----TDMTTIRRSLGVCP 80
            I   LG NG GKTT + +L G +  + G        +  ++     ++    + L    
Sbjct: 26  TILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNE 85

Query: 81  QYNAL---FDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGM 137
               +          + +   +  + + K   + +   +   L + +     AN LSGG 
Sbjct: 86  L-KIVHKIQYVEYASKFL-KGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGG 143

Query: 138 QRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLL 197
            ++L VA + +  +   I D+P+S +D   R ++ + + +  K + VI+  H +   D L
Sbjct: 144 LQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYL 203

Query: 198 GDRIAII 204
            D I II
Sbjct: 204 TDLIHII 210

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 97.2 bits (243), Expect = 2e-24
 Identities = 52/230 (22%), Positives = 100/230 (43%), Gaps = 31/230 (13%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
            +N+ K F     A++G++++  +  +T  +G NG+GK+T I+++ G L    G     N
Sbjct: 10  TENIVKYF-GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFEN 68

Query: 63  HDIRTDMTTIRR-SLGVCP--QYNALFDKLTVEEHM---------------WFYSQLKQ- 103
            DI T+         G+    Q      ++TV E++               ++   + + 
Sbjct: 69  KDI-TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKE 127

Query: 104 ---VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160
              V K    LE       L + H     A  LSGG  + + +  A +   + +++DEP 
Sbjct: 128 EEMVEKAFKILEF------LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPI 181

Query: 161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           +GV P     I+  +++ K KG T ++  H +D      D + ++  G++
Sbjct: 182 AGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 231

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 98.9 bits (247), Expect = 8e-24
 Identities = 46/205 (22%), Positives = 82/205 (40%), Gaps = 26/205 (12%)

Query: 5   NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD 64
            L K +  G   +        + ++   +G NG GKTT + ML G+   + G        
Sbjct: 362 RLVKDY--GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK------- 412

Query: 65  IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH 124
           +  D+T   +     PQY     + TV E            K  +    + ++  LGI  
Sbjct: 413 VEWDLTVAYK-----PQYIKAEYEGTVYE--LLSKIDS--SKLNSNFYKTELLKPLGIID 463

Query: 125 KRTSLANTLSGG-MQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY--KKG 181
                   LSGG +QR +++A   +  +   +LDEP++ +D   R ++   +     K  
Sbjct: 464 LYDRNVEDLSGGELQR-VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE 522

Query: 182 RTVILTTH--YMDEADLLGDRIAII 204
           +T ++  H   M   D + DR+ + 
Sbjct: 523 KTALVVEHDVLM--IDYVSDRLIVF 545

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 80.8 bits (200), Expect = 1e-17
 Identities = 39/218 (17%), Positives = 84/218 (38%), Gaps = 28/218 (12%)

Query: 4   QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK---- 59
           ++   R+      +  L +   +  +   +G NG GKTT + +L G L  +         
Sbjct: 95  EDCVHRYGVNAFVLYRLPI-VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWD 153

Query: 60  -IYNHDIRTDMTTIRRSLGVC-------PQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQ 110
            +       ++      L          PQY  L  K           +++++  K    
Sbjct: 154 NVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKG-------KVRELLKKVDEV 206

Query: 111 LEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
            +   ++ +L + +      + LSGG  +++++A A +  +     DEP+S +D   R  
Sbjct: 207 GKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLK 266

Query: 171 IWELLIKYKK-GRTVILTTH---YMDEADLLGDRIAII 204
           +  ++ +    G+ V++  H    +D    L D I ++
Sbjct: 267 VARVIRRLANEGKAVLVVEHDLAVLDY---LSDVIHVV 301

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 98.6 bits (246), Expect = 9e-24
 Identities = 44/210 (20%), Positives = 84/210 (40%), Gaps = 20/210 (9%)

Query: 2   AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           A    S +   G   +N     F + +I   +G NG GKTT I +L G L    G     
Sbjct: 353 AFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ---- 408

Query: 62  NHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG 121
                      + ++ + PQ  A     TV     F+ +++   + L     ++++  L 
Sbjct: 409 --------DIPKLNVSMKPQKIAPKFPGTV--RQLFFKKIR--GQFLNPQFQTDVVKPLR 456

Query: 122 IPHKRTSLANTLSGG-MQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-- 178
           I          LSGG +QR +++ +A    +   ++DEP++ +D   R    +++ ++  
Sbjct: 457 IDDIIDQEVQHLSGGELQR-VAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFIL 515

Query: 179 KKGRTVILTTHYMDEADLLGDRIAIIAAGK 208
              +T  +  H    A  L D++ +     
Sbjct: 516 HNKKTAFIVEHDFIMATYLADKVIVFEGIP 545

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 97.8 bits (244), Expect = 2e-23
 Identities = 39/215 (18%), Positives = 87/215 (40%), Gaps = 17/215 (7%)

Query: 5   NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG-------- 56
           +++ R+      ++ L       Q+   +G NG GK+T + +L G    + G        
Sbjct: 82  HVTHRYSANSFKLHRLPT-PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEW 140

Query: 57  --TAKIYN-HDIRTDMTTIR---RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQ 110
               K +   +++   T +        + PQY     +  ++  +    +L ++  + + 
Sbjct: 141 QEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR-AIKGPVQKVGELLKLRMEKSP 199

Query: 111 LEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
            ++   I  L + +        LSGG  ++ ++ M+ +  +   + DEP+S +D   R +
Sbjct: 200 EDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLN 259

Query: 171 IWELLIKYKK-GRTVILTTHYMDEADLLGDRIAII 204
             +++       + VI   H +   D L D + II
Sbjct: 260 AAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCII 294

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 94.2 bits (235), Expect = 1e-23
 Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 11/213 (5%)

Query: 5   NLSKRFPNGKLAVNGLNVNFYEDQ-ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
              KR  N +L     NV+F   +     LG  GAGK+  + ++ G++    G  ++   
Sbjct: 6   RAEKRLGNFRL-----NVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGA 60

Query: 64  DIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP 123
           DI T +   RR +G  PQ  ALF  L+V  ++ +   L+ V +      +  M   LGI 
Sbjct: 61  DI-TPLPPERRGIGFVPQDYALFPHLSVYRNIAY--GLRNVERVERDRRVREMAEKLGIA 117

Query: 124 HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI-WELL-IKYKKG 181
           H        LSGG ++++++A A +   R ++LDEP S VD  ++  +  EL  ++ +  
Sbjct: 118 HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD 177

Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
             ++  TH + EA +L D +A++  G++   G 
Sbjct: 178 VPILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 93.8 bits (234), Expect = 3e-23
 Identities = 39/212 (18%), Positives = 84/212 (39%), Gaps = 17/212 (8%)

Query: 13  GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72
               +  L+      +I   +G NGAGK+T ++ + GM     G+ +     +    +  
Sbjct: 12  ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLE-AWSAT 69

Query: 73  R--RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLA 130
           +         Q         V      Y  L Q  K   +L ++++   L +  K     
Sbjct: 70  KLALHRAYLSQQQTPPFATPVWH----YLTLHQHDKTRTEL-LNDVAGALALDDKLGRST 124

Query: 131 NTLSGGMQRKLSVAMA-------FIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGR 182
           N LSGG  +++ +A              + ++LDEP + +D   + ++ ++L    ++G 
Sbjct: 125 NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGL 184

Query: 183 TVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
            +++++H ++       R  ++  GK+   G 
Sbjct: 185 AIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 216

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 94.3 bits (235), Expect = 2e-22
 Identities = 47/203 (23%), Positives = 83/203 (40%), Gaps = 22/203 (10%)

Query: 5   NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD 64
            L K +  G   +        + ++   +G NG GKTT + ML G+   + G        
Sbjct: 292 RLVKDY--GSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK------- 342

Query: 65  IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH 124
           I  D+T   +     PQY     + TV E            K  +    + ++  LGI  
Sbjct: 343 IEWDLTVAYK-----PQYIKADYEGTVYE--LLSKIDA--SKLNSNFYKTELLKPLGIID 393

Query: 125 KRTSLANTLSGG-MQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY--KKG 181
                 N LSGG +QR +++A   +  +   +LDEP++ +D   R ++   +     K  
Sbjct: 394 LYDREVNELSGGELQR-VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE 452

Query: 182 RTVILTTHYMDEADLLGDRIAII 204
           +T ++  H +   D + DR+ + 
Sbjct: 453 KTALVVEHDVLMIDYVSDRLMVF 475

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 79.3 bits (196), Expect = 4e-17
 Identities = 40/213 (18%), Positives = 85/213 (39%), Gaps = 20/213 (9%)

Query: 5   NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP------VSSGTA 58
           +   R+      +  L V   E  +   +G NG GK+T + +L G L         S   
Sbjct: 26  DCVHRYGVNAFVLYRLPV-VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDG 84

Query: 59  KIYN---HDIRTDMTTIR-RSLGVCP--QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE 112
            I     ++++     ++   +      QY  L  K    +       ++ + K     +
Sbjct: 85  VIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGK------VIELLKKADETGK 138

Query: 113 ISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW 172
           +  ++  L + +        LSGG  +++++A A +  +     DEP+S +D   R +  
Sbjct: 139 LEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAA 198

Query: 173 ELLIKYKK-GRTVILTTHYMDEADLLGDRIAII 204
             + +  + G++V++  H +   D L D I ++
Sbjct: 199 RAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVV 231

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 91.5 bits (228), Expect = 1e-21
 Identities = 57/210 (27%), Positives = 109/210 (51%), Gaps = 8/210 (3%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           I++LS+++     +++ L++     +    LG  GAGKT  + ++ G     SG   +  
Sbjct: 4   IESLSRKW--KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDG 61

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
            D+ TD++  +  +    Q  +LF  + V++++ F  ++K++      L+ +     L I
Sbjct: 62  KDV-TDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARD---LKI 117

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS-IWEL-LIKYKK 180
            H       TLSGG Q+++++A A +   + ++LDEP S +DP ++ +    L ++  K 
Sbjct: 118 EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN 177

Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
             TV+  TH   EA ++ DRIA++  GKL 
Sbjct: 178 KLTVLHITHDQTEARIMADRIAVVMDGKLI 207

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 90.7 bits (226), Expect = 2e-21
 Identities = 59/221 (26%), Positives = 94/221 (42%), Gaps = 22/221 (9%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           I +LSK F      +N ++++    +I   +G +G GKTT +  L G     SG   +  
Sbjct: 7   IGHLSKSF-QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSG 65

Query: 63  HDIRTDMTTI---RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
             I +  T +    R LG   Q   LF  LTV  ++ +     +      +  I  M+  
Sbjct: 66  KTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLEL 125

Query: 120 LGIPHKRTSLANTLSGGM-QRKLSVAMAFIGGSRTVI-------LDEPTSGVDPYSRRSI 171
            GI        + LSGG  QR    A+A     R +        LDEP S +D   RR I
Sbjct: 126 TGISELAGRYPHELSGGQQQR---AALA-----RALAPDPELILLDEPFSALDEQLRRQI 177

Query: 172 -WELL-IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
             +++      G++ +  +H  +EA    DRIA++  G++ 
Sbjct: 178 REDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRIL 218

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 90.4 bits (225), Expect = 2e-21
 Identities = 55/214 (25%), Positives = 109/214 (50%), Gaps = 3/214 (1%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
              + K +P G  +V G++    E ++   LG +G+GKTT + ++ G+   + G   I  
Sbjct: 17  FVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGG 76

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
             + TD+   +R++G+  Q  ALF  +TV +++ F  + K+VPKD     +  ++  + +
Sbjct: 77  KRV-TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRL 135

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS--IWELLIKYKK 180
                   + LSGG Q+++++A A     + ++ DEP + +D   RR    +   +  + 
Sbjct: 136 ESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEM 195

Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           G T +  TH  +EA  + DR+ ++  G ++  G+
Sbjct: 196 GVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGT 229

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 88.9 bits (221), Expect = 8e-21
 Identities = 61/216 (28%), Positives = 116/216 (53%), Gaps = 9/216 (4%)

Query: 3   IQNLSKRFPNGK---LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           + N++K F  G     A+N ++++    QI   +G +GAGK+T I  +  +   + G+  
Sbjct: 27  LSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVL 86

Query: 60  IYNHDI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISN 115
           +   ++     +++T  RR +G+  Q+  L    TV  ++    +L   PKD  +  ++ 
Sbjct: 87  VDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTE 146

Query: 116 MIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
           ++  +G+  K  S  + LSGG ++++++A A     + ++ D+ TS +DP + RSI ELL
Sbjct: 147 LLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELL 206

Query: 176 --IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
             I  + G T++L TH MD    + D +A+I+ G+L
Sbjct: 207 KDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 242

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 80.2 bits (199), Expect = 3e-18
 Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 19/183 (10%)

Query: 15  LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTT--- 71
            A+ G+++     QI + +G NGAGKTTT+S + G++    G       DI T+      
Sbjct: 20  HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDI-TNKPAHVI 78

Query: 72  IRRSLGVCPQYNALFDKLTVEEHM----WFYSQLKQVPKDLAQLEISNMIVDLGIP---H 124
            R  + + P+   +F +LTV E++    +     + + +DL        I  L  P    
Sbjct: 79  NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLE------WIFSL-FPRLKE 131

Query: 125 KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-GRT 183
           +   L  TLSGG Q+ L++  A +   + +++DEP+ G+ P     ++E++ K  + G T
Sbjct: 132 RLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTT 191

Query: 184 VIL 186
           ++L
Sbjct: 192 ILL 194

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 81.5 bits (202), Expect = 3e-18
 Identities = 63/236 (26%), Positives = 107/236 (45%), Gaps = 34/236 (14%)

Query: 1   MA---IQNLSKRFPNGKL-AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG 56
           M    ++N+SK F  GK+ A++ +N+N    +    LG +GAGKTT + ++ G+   S+G
Sbjct: 1   MVRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTG 60

Query: 57  TAKI----YNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE 112
                      + +  +    R +G+  Q  AL+  LT  E++ F     ++ K+    E
Sbjct: 61  ELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE----E 116

Query: 113 ISNMIVD----LGIPHKRTSLANTLSGG-MQRKLSVAMAFIGGSRTVI-------LDEPT 160
           I   + +    L I H        LSG   QR   VA+A     R ++       LDEP 
Sbjct: 117 IRKRVEEVAKILDIHHVLNHFPRELSGAQQQR---VALA-----RALVKDPSLLLLDEPF 168

Query: 161 SGVDPYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           S +D   R S   L+ + +   G T+++ +H   +   + DR+ ++  GKL   G 
Sbjct: 169 SNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGK 224

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 70.2 bits (173), Expect = 7e-15
 Identities = 51/220 (23%), Positives = 107/220 (48%), Gaps = 22/220 (10%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML--PVSSGTAKI 60
            +N+ K     +  + G++++  + +  S +G +G+GK+T + +L G+L  P + G   +
Sbjct: 7   AENIKKVIRGYE-ILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAP-TEGKVFL 63

Query: 61  YNHDIRT----DMTTIR-RSLG-VCPQYNALFDKLTVEEH----MWFYSQLKQVPKDLAQ 110
              ++      +++ +R R LG V   +  L  +LT  E+    M         PK  A+
Sbjct: 64  EGKEVDYTNEKELSLLRNRKLGFVFQFHY-LIPELTALENVIVPMLK----MGKPKKEAK 118

Query: 111 LEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
                ++ +LG+  K +     LSGG Q+++++A A       +  DEPT  +D  + + 
Sbjct: 119 ERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKR 178

Query: 171 IWELLIK-YKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           + ++ +K  + G ++++ TH  + A+ L  R   +  GK+
Sbjct: 179 VMDIFLKINEGGTSIVMVTHERELAE-LTHRTLEMKDGKV 217

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 71.6 bits (176), Expect = 2e-14
 Identities = 55/203 (27%), Positives = 99/203 (48%), Gaps = 18/203 (8%)

Query: 18  NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSL 76
            GLN+     Q  + +G++G GK+TT+ ++  +     G   I   DIRT ++  +R  +
Sbjct: 407 KGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREII 466

Query: 77  GVCPQYNALFDKLTVEEHMWF---YSQLKQVPKDLAQLEISNMIVDLGIPHK-RTSL--- 129
           GV  Q   LF   T+ E++ +      + ++ K + +    + I+ L  PH+  T +   
Sbjct: 467 GVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKL--PHQFDTLVGER 523

Query: 130 ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTH 189
              LSGG ++++++A A +   + ++LDE TS +D  S   +   L K ++GRT I+  H
Sbjct: 524 GAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAH 583

Query: 190 YMD---EADLLGDRIAIIAAGKL 209
            +     A    D IA    G +
Sbjct: 584 RLSTVRNA----DVIAGFDGGVI 602

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 26/208 (12%)

Query: 18   NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSL 76
             GL++   + Q  + +G +G GK+T + +L       +G+  +   +I+  ++  +R  L
Sbjct: 1050 QGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQL 1109

Query: 77   GVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-------ISNMIVDLGIPHK-RTS 128
            G+  Q   LFD  ++ E++ +    + V  +  ++        I   I  L  P K  T 
Sbjct: 1110 GIVSQEPILFDC-SIAENIAYGDNSRVVSYE--EIVRAAKEANIHQFIDSL--PDKYNTR 1164

Query: 129  L---ANTLSGG-MQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTV 184
            +      LSGG  QR +++A A +     ++LDE TS +D  S + + E L K ++GRT 
Sbjct: 1165 VGDKGTQLSGGQKQR-IAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTC 1223

Query: 185  ILTTHY---MDEADLLGDRIAIIAAGKL 209
            I+  H    +  A    D I +I  GK+
Sbjct: 1224 IVIAHRLSTIQNA----DLIVVIQNGKV 1247

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 69.0 bits (170), Expect = 3e-14
 Identities = 57/248 (22%), Positives = 110/248 (44%), Gaps = 37/248 (14%)

Query: 11  PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DM 69
           P+  + ++ +N++  + ++   +G +G+GK+T   ++       +G   I  HD+   D 
Sbjct: 19  PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP 78

Query: 70  TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEIS---------NMIVDL 120
             +RR +GV  Q N L ++ ++ +++   +        ++  ++          + I +L
Sbjct: 79  NWLRRQVGVVLQDNVLLNR-SIIDNISLANP------GMSVEKVIYAAKLAGAHDFISEL 131

Query: 121 GIPHK-RTSLA---NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI 176
                  T +      LSGG ++++++A A +   + +I DE TS +D  S   I   + 
Sbjct: 132 --REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 189

Query: 177 KYKKGRTVILTTHYMD---EADLLGDRIAIIAAGKLQCCGS-SVFLKNSFARGYYLSLDM 232
           K  KGRTVI+  H +     A    DRI ++  GK+   G     L        Y  L  
Sbjct: 190 KICKGRTVIIIAHRLSTVKNA----DRIIVMEKGKIVEQGKHKELLSEP--ESLYSYL-- 241

Query: 233 KSAQLQAE 240
              QLQ++
Sbjct: 242 --YQLQSD 247

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score = 67.8 bits (166), Expect = 3e-13
 Identities = 54/260 (20%), Positives = 108/260 (41%), Gaps = 35/260 (13%)

Query: 3   IQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           +++L+ ++   G   +  ++ +    Q    LG  G+GK+T +S  + +L  + G  +I 
Sbjct: 22  VKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQID 80

Query: 62  NHDIRT-DMTTIRRSLGVCPQYNALF-----------DKLTVEEHMWF---YSQLKQVPK 106
                +  +   R++ GV PQ   +F              + +E +W       L+ V +
Sbjct: 81  GVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQE-IWKVADEVGLRSVIE 139

Query: 107 DLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKL-SVAMAFIGGSRTVILDEPTSGVDP 165
                ++  ++VD G           LS G  ++L  +A + +  ++ ++LDEP++ +DP
Sbjct: 140 QFPG-KLDFVLVDGG---------CVLSHG-HKQLMCLARSVLSKAKILLLDEPSAHLDP 188

Query: 166 YSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS-SVFLKNS--- 221
            + + I   L +     TVIL    + EA L  D+  +I   K++   S           
Sbjct: 189 VTYQIIRRTLKQAFADCTVILCEARI-EAMLECDQFLVIEENKVRQYDSILELYHYPADR 247

Query: 222 FARGYYLSLDMKSAQLQAED 241
           F  G+  S  M    ++   
Sbjct: 248 FVAGFIGSPKMNFLPVKVTA 267

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score = 67.6 bits (166), Expect = 3e-13
 Identities = 67/233 (28%), Positives = 114/233 (48%), Gaps = 35/233 (15%)

Query: 1   MA---IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
           M    ++N+ K+F N   A+N +N+   + +  + LG +G+GK+T +  + G+   +SG 
Sbjct: 1   MVEIKLENIVKKFGNFT-ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59

Query: 58  AKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI 117
                 D+ T++    R++G+  Q  AL+  +TV +++ F  +L++ P++    EI   +
Sbjct: 60  IYFDEKDV-TELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPRE----EIDKKV 114

Query: 118 VD----LGIPHKRTSLANTLSGG-MQRKLSVAMAFIGGSRTVI-------LDEPTSGVDP 165
            +    L I          LSGG  QR   VA+A     R ++       LDEP S +D 
Sbjct: 115 REVAKMLHIDKLLNRYPWQLSGGQQQR---VAIA-----RALVKEPEVLLLDEPLSNLDA 166

Query: 166 YSR---RSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
             R   R+  EL    K+ G T +  TH   EA  + DRIA+I  G++   G+
Sbjct: 167 LLRLEVRA--ELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGT 217

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372

 Score = 66.9 bits (164), Expect = 4e-13
 Identities = 70/244 (28%), Positives = 109/244 (44%), Gaps = 51/244 (20%)

Query: 1   MA---IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
           MA   + ++ K F     AV  +++   + +    LG +G GKTTT+ M+ G+   S G 
Sbjct: 1   MAGVRLVDVWKVFGEVT-AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59

Query: 58  AKIYNHDIRTDMTTIRRSLGVCP---------QYNALFDKLTVEEHMWFYSQLKQVPKDL 108
             I +      +    + + V P         Q  AL+  +TV +++ F  +L++VP+  
Sbjct: 60  IYIGD----KLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQ- 114

Query: 109 AQLEISNMIVD----LGIPH--KRTSLANTLSGG-MQRKLSVAMAFIGGSRTVI------ 155
              EI   + +    LG+     R      LSGG  QR   VA+      R ++      
Sbjct: 115 ---EIDQRVREVAELLGLTELLNRKPRE--LSGGQRQR---VALG-----RAIVRKPQVF 161

Query: 156 -LDEPTSGVDPYSR---RSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
            +DEP S +D   R   R+  EL    ++ G T I  TH   EA  +GDRIA++  G LQ
Sbjct: 162 LMDEPLSNLDAKLRVRMRA--ELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQ 219

Query: 211 CCGS 214
             GS
Sbjct: 220 QVGS 223

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 65.6 bits (161), Expect = 4e-13
 Identities = 55/224 (24%), Positives = 110/224 (49%), Gaps = 19/224 (8%)

Query: 3   IQNLSKRFPNGKLAV---NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-SSGTA 58
           ++N++K +  G+  +     +N+N  E +  S +G +G+GK+T ++++ G L   + G  
Sbjct: 4   LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTEGEV 62

Query: 59  KIYNHDI----RTDMTTIRR-SLG-VCPQYNALFDKLTVEEHM---WFYSQLKQVPKDLA 109
            I N         ++T IRR  +G V  Q+N L   LT  E++     +     +  +  
Sbjct: 63  YIDNIKTNDLDDDELTKIRRDKIGFVFQQFN-LIPLLTALENVELPLIFKYRGAMSGEER 121

Query: 110 QLEISNMIVDLGIPHKRTS-LANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR 168
           +      +    +  +  +   N LSGG Q+++++A A       ++ D+PT  +D  + 
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTG 181

Query: 169 RSIWELLIK--YKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
             I +LL K   + G+TV++ TH ++ A   G+RI  +  G+++
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINVAR-FGERIIYLKDGEVE 224

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 64.9 bits (159), Expect = 1e-12
 Identities = 49/176 (27%), Positives = 85/176 (48%), Gaps = 23/176 (13%)

Query: 28  QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMT--TIRRSLGVCPQYNAL 85
           Q  + +G +GAGK+T + +L     +SSG  +I   DI   +T  ++R  +GV PQ   L
Sbjct: 81  QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDIS-QVTQASLRSHIGVVPQDTVL 139

Query: 86  FDKLTVEEHMWFYSQLKQVPKDL---AQL-EISNMIVDLGIPHKRTSLANT--------L 133
           F+  T+ +++  Y ++     ++   AQ   I + I+    P        T        L
Sbjct: 140 FND-TIADNI-RYGRVTAGNDEVEAAAQAAGIHDAIMAF--PEGY----RTQVGERGLKL 191

Query: 134 SGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTH 189
           SGG ++++++A   +     ++LDE TS +D  + R+I   L K    RT I+  H
Sbjct: 192 SGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAH 247

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 63.6 bits (156), Expect = 3e-12
 Identities = 43/203 (21%), Positives = 87/203 (42%), Gaps = 28/203 (13%)

Query: 4   QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
           +++   + + +  +  ++     + I +F G +G GK+T  S+L      ++G   I   
Sbjct: 5   RHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQ 64

Query: 64  DIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD-------LAQLE--I 113
            I    +   R  +G   Q +A+    T+ E++  Y        +       LA     +
Sbjct: 65  PIDNISLENWRSQIGFVSQDSAIMAG-TIRENL-TYGLEGDYTDEDLWQVLDLAFARSFV 122

Query: 114 SNM-------IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
            NM       + + G+          +SGG +++L++A AF+   + ++LDE T+ +D  
Sbjct: 123 ENMPDQLNTEVGERGV---------KISGGQRQRLAIARAFLRNPKILMLDEATASLDSE 173

Query: 167 SRRSIWELLIKYKKGRTVILTTH 189
           S   + + L    KGRT ++  H
Sbjct: 174 SESMVQKALDSLMKGRTTLVIAH 196

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score = 64.6 bits (158), Expect = 3e-12
 Identities = 74/233 (31%), Positives = 112/233 (48%), Gaps = 35/233 (15%)

Query: 1   MA---IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
           M    ++NL+KRF N   AVN LN+   + +    LG +G GKTTT+ M+ G+   + G 
Sbjct: 9   MVEVKLENLTKRFGNFT-AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67

Query: 58  AKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI 117
               + D+ T +    R++ +  Q  A++  +TV E++ F  ++K+ PKD    EI   +
Sbjct: 68  IYFGDRDV-TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKD----EIDKRV 122

Query: 118 VD----LGIPHKRTSLANTLSGG-MQRKLSVAMAFIGGSRTVI-------LDEPTSGVDP 165
                 L I          LSGG  QR   VA+A     R ++       +DEP S +D 
Sbjct: 123 RWAAELLQIEELLNRYPAQLSGGQRQR---VAVA-----RAIVVEPDVLLMDEPLSNLDA 174

Query: 166 YSR---RSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
             R   R+  E+    +K   T I  TH   EA  +GDRIA++  G+L   GS
Sbjct: 175 KLRVAMRA--EIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGS 225

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 69/235 (29%), Positives = 109/235 (46%), Gaps = 39/235 (16%)

Query: 1   MA---IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
           M    + NL K F     AV+G++    + +  + LG +G GKTTT+ ML G+   +SG 
Sbjct: 1   MPSIRVVNLKKYF-GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59

Query: 58  AKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI 117
               +  +  D+    R +G+  Q  AL+  +TV E++ F  + +++ KD    E+   +
Sbjct: 60  IYFDDVLV-NDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKD----EVEKRV 114

Query: 118 VD----LGIPH--KRTSLANTLSGG-MQRKLSVAMAFIGGSRTVI-------LDEPTSGV 163
           V+    L I +   R      LSGG  QR   VA+A     R ++        DEP S +
Sbjct: 115 VEIARKLLIDNLLDRKPTQ--LSGGQQQR---VALA-----RALVKQPKVLLFDEPLSNL 164

Query: 164 DPYSR---RSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           D   R   R+  E+    ++ G T +  TH   EA  +  RIA+   GKL   G+
Sbjct: 165 DANLRMIMRA--EIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGT 217

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 61.8 bits (151), Expect = 3e-11
 Identities = 45/190 (23%), Positives = 90/190 (47%), Gaps = 16/190 (8%)

Query: 11  PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DM 69
                A+  +N+     +  + +G +G+GK+T  S++     +  G   +  HD+R   +
Sbjct: 353 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTL 412

Query: 70  TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD--LAQLEISN---MIVDLGIPH 124
            ++R  + +  Q   LF+  TV  ++  Y++ ++  ++       ++     I  +   +
Sbjct: 413 ASLRNQVALVSQNVHLFND-TVANNI-AYARTEEYSREQIEEAARMAYAMDFINKM--DN 468

Query: 125 K-RTSL---ANTLSGGMQR-KLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
              T +      LSGG QR ++++A A +  S  +ILDE TS +D  S R+I   L + +
Sbjct: 469 GLDTIIGENGVLLSGG-QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ 527

Query: 180 KGRTVILTTH 189
           K RT ++  H
Sbjct: 528 KNRTSLVIAH 537

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148

 Score = 58.6 bits (142), Expect = 4e-11
 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 11/118 (9%)

Query: 89  LTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSL-ANTLSGG-MQR-----KL 141
              E     +++  +       +      V L +  +        LSGG         +L
Sbjct: 13  KIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRL 72

Query: 142 SVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTH---YMDEAD 195
           ++++   G    +ILDEPT  +D   RR +  ++ +Y  K   VIL +H     D AD
Sbjct: 73  AMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAAD 130

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 60.3 bits (147), Expect = 4e-11
 Identities = 58/221 (26%), Positives = 113/221 (51%), Gaps = 24/221 (10%)

Query: 3   IQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           +  L K F  G L V  G+NV+  E ++   +G +G+GK+T +  L  +     G   I 
Sbjct: 27  VHQLKKSF--GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIID 84

Query: 62  NHDI---RTDMTTIRRSLG-VCPQYNALFDKLTVEEH-----MWFYSQLKQVPKDLAQLE 112
             ++    T++  +R  +G V  ++N LF  +TV  +     M     +++ P++ A+ +
Sbjct: 85  GINLKAKDTNLNKVREEVGMVFQRFN-LFPHMTVLNNITLAPMK----VRKWPREKAEAK 139

Query: 113 ISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW 172
              ++  +G+  K  +  ++LSGG  +++++A A     + ++ DEPTS +DP     + 
Sbjct: 140 AMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP---EMVG 196

Query: 173 ELL--IKY--KKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           E+L  +K    +G T+++ TH M  A  +GDR+  +  G +
Sbjct: 197 EVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYI 237

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 61.1 bits (149), Expect = 5e-11
 Identities = 47/190 (24%), Positives = 95/190 (50%), Gaps = 16/190 (8%)

Query: 11  PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DM 69
              K A++ ++ +  + +  + +G +G+GK+T  ++      V SG+  +  HD+R   +
Sbjct: 353 GKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKL 412

Query: 70  TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD--LAQLEISN---MIVDLGIPH 124
           T +RR   +  Q   LF+  T+  ++  Y+   +  ++        ++    I ++  P 
Sbjct: 413 TNLRRHFALVSQNVHLFND-TIANNI-AYAAEGEYTREQIEQAARQAHAMEFIENM--PQ 468

Query: 125 K-RTSL---ANTLSGGMQR-KLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
              T +     +LSGG QR ++++A A +  +  +ILDE TS +D  S R+I   L + +
Sbjct: 469 GLDTVIGENGTSLSGG-QRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ 527

Query: 180 KGRTVILTTH 189
           K +TV++  H
Sbjct: 528 KNKTVLVIAH 537

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 59.1 bits (144), Expect = 9e-11
 Identities = 49/223 (21%), Positives = 86/223 (38%), Gaps = 47/223 (21%)

Query: 11  PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMT 70
             G   +  +N      Q+ +  G  GAGKT+ + M+MG L  S G  K           
Sbjct: 18  EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK----------- 66

Query: 71  TIRRSLGVCPQY----------NALFDKLTVEEHMWFYSQLKQV---PKDLAQLEISNM- 116
                +  C Q+          N +F     E     Y  + +     +D+++    +  
Sbjct: 67  -HSGRISFCSQFSWIMPGTIKENIIFGVSYDEY---RYRSVIKACQLEEDISKFAEKDNI 122

Query: 117 -IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
            + + GI         TLSGG + ++S+A A    +   +LD P   +D  + + I+E  
Sbjct: 123 VLGEGGI---------TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 173

Query: 176 IK-YKKGRTVILTTH---YMDEADLLGDRIAIIAAGKLQCCGS 214
           +      +T IL T    ++ +A    D+I I+  G     G+
Sbjct: 174 VCKLMANKTRILVTSKMEHLKKA----DKILILHEGSSYFYGT 212

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 57.6 bits (140), Expect = 3e-10
 Identities = 54/225 (24%), Positives = 91/225 (40%), Gaps = 49/225 (21%)

Query: 11  PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMT 70
            +    +NG+  +  E  + + +G  G GK++ +S L+  +    G   I          
Sbjct: 15  RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------- 66

Query: 71  TIRRSLGVCPQY----------NALFDKLTVEEHMWFYSQLKQV---PKDLAQLEISNM- 116
               S+   PQ           N LF     E    +Y  + Q      DL  L   +  
Sbjct: 67  ----SVAYVPQQAWIQNDSLRENILFGCQLEEP---YYRSVIQACALLPDLEILPSGDRT 119

Query: 117 -IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
            I + G+          LSGG ++++S+A A    +   + D+P S VD +  + I+E +
Sbjct: 120 EIGEKGV---------NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170

Query: 176 IKYK---KGRTVILTTH---YMDEADLLGDRIAIIAAGKLQCCGS 214
           I  K   K +T IL TH   Y+ +     D I +++ GK+   GS
Sbjct: 171 IGPKGMLKNKTRILVTHSMSYLPQV----DVIIVMSGGKISEMGS 211

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 57.2 bits (139), Expect = 4e-10
 Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 28/186 (15%)

Query: 21  NVNFYED--QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG 77
           ++NF+       + +GH G+GK+T   +L        G  KI   ++   +  +IR  +G
Sbjct: 38  SINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIG 96

Query: 78  VCPQYNALFDKLTVEEHMWF------YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLAN 131
           + PQ   LF++ T++ ++ +        ++ +  K  AQ  + + I  L  P K     +
Sbjct: 97  IVPQDTILFNE-TIKYNILYGKLDATDEEVIKATK-SAQ--LYDFIEAL--PKKW----D 146

Query: 132 T--------LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRT 183
           T        LSGG ++++++A   +   + VI DE TS +D  +     + +   +K RT
Sbjct: 147 TIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRT 206

Query: 184 VILTTH 189
           +I+  H
Sbjct: 207 LIIIAH 212

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 57.4 bits (139), Expect = 5e-10
 Identities = 48/216 (22%), Positives = 85/216 (39%), Gaps = 48/216 (22%)

Query: 18  NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLG 77
             +N      Q+ +  G  GAGKT+ + M+MG L  S G  K                + 
Sbjct: 55  KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH------------SGRIS 102

Query: 78  VCPQY----------NALFDKLTVEEHMWFYSQLKQV---PKDLAQLEISNM--IVDLGI 122
            C Q           N +      +E+   Y  + +     +D+++    +   + + GI
Sbjct: 103 FCSQNSWIMPGTIKENIIGVSY--DEY--RYRSVIKACQLEEDISKFAEKDNIVLGEGGI 158

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI-KYKKG 181
                    TLSGG + ++S+A A    +   +LD P   +D  + + I+E  + K    
Sbjct: 159 ---------TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 209

Query: 182 RTVILTTH---YMDEADLLGDRIAIIAAGKLQCCGS 214
           +T IL T    ++ +A    D+I I+  G     G+
Sbjct: 210 KTRILVTSKMEHLKKA----DKILILHEGSSYFYGT 241

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 57.4 bits (138), Expect = 1e-09
 Identities = 36/210 (17%), Positives = 80/210 (38%), Gaps = 23/210 (10%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           +     S  +   K+ +N   +     +     G NG GK+T +  +           ++
Sbjct: 436 LCNCEFSLAY-GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV 486

Query: 61  YNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
                + +     R++ V    +      +V + ++      +      +  I + +++ 
Sbjct: 487 DGFPTQEEC----RTVYVEHDIDGTHSDTSVLDFVF------ESGVGTKE-AIKDKLIEF 535

Query: 121 GIPHKRTSLA-NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
           G   +  ++  + LSGG + KL++A A +  +  ++LDEPT+ +D  +   +   L    
Sbjct: 536 GFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCG 595

Query: 180 KGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
              T I  +H     D + + I      KL
Sbjct: 596 --ITSITISHDSVFLDNVCEYIINYEGLKL 623

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 56.2 bits (135), Expect = 3e-09
 Identities = 35/223 (15%), Positives = 77/223 (34%), Gaps = 16/223 (7%)

Query: 2   AIQNLSKRFPNGK----LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
             + +  RF  G+    +      +N  + +  + +            +       ++  
Sbjct: 757 PSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYE 816

Query: 58  AKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHM--------WFYSQLKQVPKDLA 109
            +              R + +    NA   +  + E             +      + L 
Sbjct: 817 YECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLT 876

Query: 110 QLEISNMIVDLGIPHKRTSLA--NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS 167
           + EI      LG+  +  S +    LSGG + KL +A         ++LDEPT+ +D  S
Sbjct: 877 RKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS 936

Query: 168 RRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
             ++ + L +++    VI+ TH  +    L + +  +  G++ 
Sbjct: 937 LGALSKALKEFEG--GVIIITHSAEFTKNLTEEVWAVKDGRMT 977

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 28/207 (13%), Positives = 68/207 (32%), Gaps = 15/207 (7%)

Query: 3   IQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           + N+  ++P   K  +  +N         + +G NGAGK+T I++L G L  +SG     
Sbjct: 674 VTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT- 732

Query: 62  NHDIRTDMTTIRRSLGVCPQYNALF-DKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
           + + R         +    Q+     +    +    +     Q  +D   ++ +N  ++ 
Sbjct: 733 HENCR---------IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINE 783

Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
               +  +    + G  +R   +       +          G +   +   W  ++    
Sbjct: 784 N-DAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDN 842

Query: 181 GRTVI--LTTHYMDEADLLGDRIAIIA 205
                  L   +      +  + A+ +
Sbjct: 843 AWIPRGELVESHSKMVAEVDMKEALAS 869

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 55.6 bits (135), Expect = 2e-09
 Identities = 58/246 (23%), Positives = 105/246 (42%), Gaps = 52/246 (21%)

Query: 3   IQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           + +L KR+  G   V  G+++      + S +G +G+GK+T +  +  +   S G   + 
Sbjct: 9   VIDLHKRY--GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVN 66

Query: 62  NHDIR--------------TDMTTIRRSLG-VCPQYNALFDKLTVEEH-MWFYSQLKQVP 105
             +I                 +  +R  L  V   +N L+  +TV E+ M    Q+  + 
Sbjct: 67  GQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN-LWSHMTVLENVMEAPIQVLGLS 125

Query: 106 KDLAQLEISNMIVDLGIPHK-RTSLANTLSGG-MQRKLSVAMAFIGGSRT------VIL- 156
           K  A+      +  +GI  + +      LSGG  QR   V++A     R       V+L 
Sbjct: 126 KHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQR---VSIA-----RALAMEPDVLLF 177

Query: 157 DEPTSGVDPYSRRSIWEL------LIKY--KKGRTVILTTHYMDEADLLGDRIAIIAAGK 208
           DEPTS +DP       EL      +++   ++G+T+++ TH M  A  +   +  +  GK
Sbjct: 178 DEPTSALDP-------ELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 230

Query: 209 LQCCGS 214
           ++  G 
Sbjct: 231 IEEEGD 236

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 55.2 bits (134), Expect = 3e-09
 Identities = 47/211 (22%), Positives = 86/211 (40%), Gaps = 31/211 (14%)

Query: 18  NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSL 76
            GL    Y  ++T+ +G NG+GK+T  ++L  +   + G   +    +   D   +   +
Sbjct: 36  QGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQV 95

Query: 77  GVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEIS---------NMIVDLGIPHK-R 126
               Q   LF + +  E++ +      + +     EI+         + I     P    
Sbjct: 96  AAVGQEPLLFGR-SFRENIAY-----GLTRTPTMEEITAVAMESGAHDFISGF--PQGYD 147

Query: 127 TSL---ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKG 181
           T +    N LSGG ++ +++A A I   R +ILD  TS +D  ++  +  LL        
Sbjct: 148 TEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWAS 207

Query: 182 RTVILTTHYM---DEADLLGDRIAIIAAGKL 209
           RTV+L T  +   + A      I  +  G +
Sbjct: 208 RTVLLITQQLSLAERA----HHILFLKEGSV 234

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 45/169 (26%), Positives = 84/169 (49%), Gaps = 15/169 (8%)

Query: 28  QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALF 86
            + + LG  G+GK+T ++++  ++    G  ++   D+RT  +  +R  +   PQ   LF
Sbjct: 370 SLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLF 429

Query: 87  DKLTVEEHMWF------YSQLKQVPKDLAQLE--ISNMIVDLGIPHKRTSLANTLSGGM- 137
              T++E++ +        ++ +  K +AQ+   I ++    G   +        SGG  
Sbjct: 430 SG-TIKENLKWGREDATDDEIVEAAK-IAQIHDFIISL--PEGYDSRVERGGRNFSGGQK 485

Query: 138 QRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVIL 186
           QR LS+A A +   + +ILD+ TS VDP + + I + L +Y KG T  +
Sbjct: 486 QR-LSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFI 533

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 49.3 bits (117), Expect = 4e-07
 Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 7/130 (5%)

Query: 81  QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQR- 139
              A   K+       F    +    ++      N +    +   +      LSGG +  
Sbjct: 197 AREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIA 256

Query: 140 -----KLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDE 193
                +L++++   G    +ILDEPT  +D   RR +  ++ +Y K    VIL +H  + 
Sbjct: 257 LGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL 316

Query: 194 ADLLGDRIAI 203
            D     I I
Sbjct: 317 KDAADHVIRI 326

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 31/195 (15%)

Query: 13  GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMT-- 70
            K  +  +  +    Q  + +G  G+GKTT +++LM    V  G   +   DIR  +   
Sbjct: 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIR-KIKRS 425

Query: 71  TIRRSLGVCPQYNALFDKLTVEEHMWFYSQL-----------KQVPKDLAQLEISNMIVD 119
           ++R S+G+  Q   LF   TV+E++  Y              K    D       + I  
Sbjct: 426 SLRSSIGIVLQDTILFST-TVKENL-KYGNPGATDEEIKEAAKLTHSD-------HFIKH 476

Query: 120 LGIPHK-RTSL---ANTLSGGMQRKL-SVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
           L  P    T L      LS G QR+L ++  AF+   + +ILDE TS VD  + +SI   
Sbjct: 477 L--PEGYETVLTDNGEDLSQG-QRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAA 533

Query: 175 LIKYKKGRTVILTTH 189
           + K  +G+T I+  H
Sbjct: 534 MWKLMEGKTSIIIAH 548

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381

 Score = 46.0 bits (110), Expect = 4e-06
 Identities = 71/240 (29%), Positives = 110/240 (45%), Gaps = 49/240 (20%)

Query: 1   MA---IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
           MA   +QN++K +         +N++ +E +   F+G +G GK+T + M+ G+  ++SG 
Sbjct: 1   MASVQLQNVTKAWGEVV-VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 59

Query: 58  AKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI 117
             I    +  D     R +G+  Q  AL+  L+V E+M F  +L    K+     I+  +
Sbjct: 60  LFIGEKRM-NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKE----VINQRV 114

Query: 118 VD----LGIPH--KRTSLANTLSGGM-QRKLSVAM---------AFIGGSRTVILDEPTS 161
                 L + H   R   A  LSGG  QR   VA+          F+       LDEP S
Sbjct: 115 NQVAEVLQLAHLLDRKPKA--LSGGQRQR---VAIGRTLVAEPSVFL-------LDEPLS 162

Query: 162 GVDPYSR---RS-IWELLIKYKK-GRTVILTTHYMD--EADLLGDRIAIIAAGKLQCCGS 214
            +D   R   R  I  L   +K+ GRT+I  TH  D  EA  L D+I ++ AG++   G 
Sbjct: 163 NLDAALRVQMRIEISRL---HKRLGRTMIYVTH--DQVEAMTLADKIVVLDAGRVAQVGK 217

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 11  PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DM 69
            N    +  +N++  + +  +F+G +G GK+T I+++     V+SG   I  H+I+    
Sbjct: 351 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLT 410

Query: 70  TTIRRSLGVCPQYNALF 86
            ++R  +G+  Q N LF
Sbjct: 411 GSLRNQIGLVQQDNILF 427

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 132 TLSGGMQR-KLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTH 189
            LSGG Q+ +LS+A  F+     +ILDE TS +D  S   I E L    K RT ++  H
Sbjct: 477 KLSGG-QKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAH 534

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 42.1 bits (99), Expect = 8e-05
 Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 7/125 (5%)

Query: 72  IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLAN 131
           +RR  G       L +K       +      +     + +E++                +
Sbjct: 220 VRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTID 279

Query: 132 TLSGGMQRKLSVAMAF-----IGGSRT--VILDEPTSGVDPYSRRSIWELLIKYKKGRTV 184
            LSGG Q  +++++       + G+R   +ILDEPT  +D   R  + E+  K K    +
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339

Query: 185 ILTTH 189
           I+ TH
Sbjct: 340 IIITH 344

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	251
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	100.0
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	100.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	100.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	100.0
2ghi_A	260	Transport protein; multidrug resistance protein, M	100.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	100.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	100.0
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	100.0
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	100.0
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	100.0
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	100.0
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	100.0
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	100.0
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	100.0
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	100.0
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	100.0
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	100.0
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	100.0
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	100.0
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	100.0
1e69_A	322	Chromosome segregation SMC protein; structural mai	100.0
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.97
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.97
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.97
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.97
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.97
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.96
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.96
2og2_A	359	Putative signal recognition particle receptor; nuc	99.96
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.95
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.95
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.95
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.94
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.94
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.94
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.94
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.94
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.94
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.94
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.93
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.93
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.93
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.93
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.93
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.91
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.91
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.9
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.9
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.9
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.9
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.9
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.9
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.89
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.89
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.89
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.89
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.89
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.88
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.88
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.86
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.86
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.86
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.86
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.86
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.85
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.85
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.83
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.81
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.81
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.81
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.8
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.8
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.8
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.79
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.79
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.79
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.78
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.78
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.77
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.76
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.76
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.76
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.75
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.73
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.71
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.71
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.69
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.68
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	99.68
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.67
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	99.66
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.66
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.65
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.64
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.64
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.63
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.63
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.62
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.6
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.6
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.57
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	99.53
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.52
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	99.51
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.5
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.49
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.48
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	99.47
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	99.42
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.42
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.41
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	99.4
2r6a_A	454	DNAB helicase, replicative helicase; replication,	99.39
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.39
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	99.31
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	99.29
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.26
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.17
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.14
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.13
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	99.11
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	99.1
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.0
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.99
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.98
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.97
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.97
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.96
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.95
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	98.95
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.94
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.94
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.9
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.87
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.85
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.75
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.75
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.75
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.72
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	98.68
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.64
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.63
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.58
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.58
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.57
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.55
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.54
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.48
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.48
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.47
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.46
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.44
2z43_A	324	DNA repair and recombination protein RADA; archaea	98.43
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	98.42
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.41
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.4
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.39
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.34
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	98.33
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.32
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	98.3
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	98.28
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.26
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.26
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	98.25
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.25
1u94_A	356	RECA protein, recombinase A; homologous recombinat	98.2
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.16
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	98.15
3ice_A	422	Transcription termination factor RHO; transcriptio	98.14
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.13
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.12
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	98.09
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	98.09
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.08
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	98.06
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	98.05
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.99
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.98
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.97
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.96
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.93
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.91
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.89
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.87
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.86
3bos_A	242	Putative DNA replication factor; P-loop containing	97.84
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.8
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.8
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.79
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.77
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.76
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.76
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.75
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.75
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.71
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.69
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.68
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.66
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.66
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.65
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.58
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.56
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.53
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.53
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.52
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.47
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.44
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.44
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.39
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.37
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.37
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.34
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.32
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.32
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	97.27
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.26
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.26
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	97.26
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.25
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.23
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.21
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.2
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.2
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.19
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.19
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	97.19
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.17
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	97.16
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.15
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.15
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.15
1via_A	175	Shikimate kinase; structural genomics, transferase	97.12
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.11
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.11
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.1
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.08
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.08
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.07
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.07
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	97.05
3io5_A	333	Recombination and repair protein; storage dimer, i	97.04
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.03
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.02
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.02
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.01
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.01
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.99
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	96.98
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.96
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.92
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.92
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.91
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.9
3co5_A	143	Putative two-component system transcriptional RES	96.88
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.87
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	96.83
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.83
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	96.82
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.81
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.8
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.79
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.78
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.78
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.78
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.76
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.75
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.75
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.74
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.74
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.73
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.73
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.72
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.71
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.7
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.69
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.69
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.69
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.69
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.68
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.68
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.67
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.66
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.65
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.65
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.65
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.65
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.65
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.64
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.64
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.64
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.62
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.62
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.62
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.62
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.61
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.61
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.6
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.6
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.6
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.6
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.59
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.59
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.59
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.58
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.58
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.57
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.56
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.54
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.53
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	96.51
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.5
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.49
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.49
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.49
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.48
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.48
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.48
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.47
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.46
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.45
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.45
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.44
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.44
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	96.44
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.42
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.41
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.4
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.39
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.39
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.38
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.38
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.37
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.37
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.34
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.34
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.33
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.32
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.31
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.31
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.3
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.3
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.3
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.3
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.29
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.28
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.28
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.28
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.28
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.28
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.27
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.27
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.27
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.27
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.26
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.26
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	96.25
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.25
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.24
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.24
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	96.24
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.24
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.24
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.23
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.22
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.22
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.21
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.2
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.2
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.19
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.19
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.19
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.18
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.18
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.17
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.17
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.16
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.15
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.15
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.15
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.15
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.14
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.14
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.14
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.13
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.12
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.12
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.12
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.11
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.11
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.1
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.09
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.08
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.08
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.06
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	96.04
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.04
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	96.03
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.03
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	96.02
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.02
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	95.98
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	95.98
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.98
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.98
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.98
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.97
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.95
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.95
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.94
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.93
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.93
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.89
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.88
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.88
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.87
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.85
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	95.83
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.81
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.8
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	95.79
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	95.79
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.77
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.76
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	95.73
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	95.71
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	95.68
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.65
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.64
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.59
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	95.53
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.5
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.46
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	95.44
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	95.39
1wxq_A	397	GTP-binding protein; structural genomics, riken st	95.38
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	95.35
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	95.27
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.24
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	95.19
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.16
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	95.13
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.09
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	95.04
3pvs_A	447	Replication-associated recombination protein A; ma	95.01
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	95.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	94.99
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	94.96
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	94.96
2qgz_A	308	Helicase loader, putative primosome component; str	94.93
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	94.86
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	94.83

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=6e-64  Score=455.02  Aligned_cols=219  Identities=28%  Similarity=0.419  Sum_probs=202.9

Q ss_pred             CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-Ch---HHhh
Q psy7367           1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DM---TTIR   73 (251)
Q Consensus         1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~---~~~~   73 (251)
                      |+++||+|+|+++   ..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. ..   ...|
T Consensus        25 i~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r  104 (366)
T 3tui_C           25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR  104 (366)
T ss_dssp             EEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHH
T ss_pred             EEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence            5789999999532   469999999999999999999999999999999999999999999999999864 22   2346


Q ss_pred             cceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCE
Q psy7367          74 RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRT  153 (251)
Q Consensus        74 ~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~l  153 (251)
                      ++|||+||++.+++.+||+||+.++....+.+..+.++++.++|+.+||.+..+++|.+|||||||||+|||||+.+|++
T Consensus       105 ~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~l  184 (366)
T 3tui_C          105 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKV  184 (366)
T ss_dssp             TTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSE
T ss_pred             CcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            88999999999999999999999998887777777788999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         154 VILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       154 lllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |||||||++||+.++..++++|++++ + |.|||+||||++++.++|||+++|++|++++.|+++++.
T Consensus       185 LLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~  252 (366)
T 3tui_C          185 LLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF  252 (366)
T ss_dssp             EEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred             EEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            99999999999999999999999984 3 999999999999999999999999999999999987653

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=3.2e-64  Score=442.55  Aligned_cols=219  Identities=27%  Similarity=0.451  Sum_probs=200.0

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC---hHHhhcceE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD---MTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~---~~~~~~~i~   77 (251)
                      |+++||+++|+++..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...   ...++++||
T Consensus         8 l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig   87 (275)
T 3gfo_A            8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIG   87 (275)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEE
T ss_pred             EEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEE
Confidence            47899999996545699999999999999999999999999999999999999999999999998422   234678899


Q ss_pred             EEccCCC-CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367          78 VCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL  156 (251)
Q Consensus        78 ~v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll  156 (251)
                      |+||++. .++.+||+||+.|+....+.+..+..++++++++.++|.+..++++.+|||||||||+|||||+.+|++|||
T Consensus        88 ~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlL  167 (275)
T 3gfo_A           88 IVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLIL  167 (275)
T ss_dssp             EECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             EEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            9999973 344789999999988777777777778899999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         157 DEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       157 DEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      ||||+|||+.++..++++|++++ + |+|||++|||++++..+|||+++|++|++++.|+++++.
T Consensus       168 DEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~  232 (275)
T 3gfo_A          168 DEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF  232 (275)
T ss_dssp             ECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHT
T ss_pred             ECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence            99999999999999999999985 4 999999999999999999999999999999999987653

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=3.7e-64  Score=455.88  Aligned_cols=218  Identities=28%  Similarity=0.380  Sum_probs=200.8

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC---ChHHhhcceE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT---DMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~~~i~   77 (251)
                      |+++||+|+|+ ++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..   .....++.||
T Consensus         5 l~i~~ls~~y~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig   83 (359)
T 3fvq_A            5 LHIGHLSKSFQ-NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG   83 (359)
T ss_dssp             EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred             EEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE
Confidence            57999999996 4789999999999999999999999999999999999999999999999999821   1223467899


Q ss_pred             EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367          78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD  157 (251)
Q Consensus        78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD  157 (251)
                      ||||++.+|+++||+||+.|+...++.+..+.+++++++++.++|.++.+++|.+|||||||||+|||||+.+|++||||
T Consensus        84 ~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLD  163 (359)
T 3fvq_A           84 YLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLD  163 (359)
T ss_dssp             EECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             EEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            99999999999999999999877666666777788999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhh-h-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         158 EPTSGVDPYSRRSIWELLIKY-K-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       158 EPt~gLD~~~~~~l~~~l~~l-~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |||++||+..+..+++.+.++ + .|.|||+||||++++..+||||++|++|+++..|+++++.
T Consensus       164 EPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~  227 (359)
T 3fvq_A          164 EPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELY  227 (359)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHH
Confidence            999999999999999988776 4 4999999999999999999999999999999999998764

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=1.1e-63  Score=455.82  Aligned_cols=217  Identities=26%  Similarity=0.428  Sum_probs=203.5

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++||+|+|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..... .++.|||||
T Consensus         4 l~~~~l~~~yg-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~-~~r~ig~Vf   81 (381)
T 3rlf_A            4 VQLQNVTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP-AERGVGMVF   81 (381)
T ss_dssp             EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG-GGSCEEEEC
T ss_pred             EEEEeEEEEEC-CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCH-HHCCEEEEe
Confidence            57999999996 4789999999999999999999999999999999999999999999999999864322 347899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+|+++||+||+.|+.+.++.++++.+++++++++.++|.+..+++|.+|||||||||+|||||+.+|++|||||||
T Consensus        82 Q~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPt  161 (381)
T 3rlf_A           82 QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL  161 (381)
T ss_dssp             TTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred             cCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence            99999999999999999988888888888889999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      ++||+..+..+++.|++++ + |.|+|+||||++++..+||||++|++|+++..|+++++.
T Consensus       162 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~  222 (381)
T 3rlf_A          162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY  222 (381)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence            9999999999999999984 4 999999999999999999999999999999999998763

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=3.8e-63  Score=433.18  Aligned_cols=219  Identities=24%  Similarity=0.425  Sum_probs=199.3

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCC---CChHHhhcceE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR---TDMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~---~~~~~~~~~i~   77 (251)
                      |+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.   .....+++.|+
T Consensus        25 l~i~~l~~~y~-~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~  103 (263)
T 2olj_A           25 IDVHQLKKSFG-SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVG  103 (263)
T ss_dssp             EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEE
T ss_pred             EEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEE
Confidence            47999999996 478999999999999999999999999999999999999999999999999984   22334567899


Q ss_pred             EEccCCCCCCCCCHHHHHHHHH-HhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367          78 VCPQYNALFDKLTVEEHMWFYS-QLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL  156 (251)
Q Consensus        78 ~v~q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll  156 (251)
                      |+||++.+++.+||+||+.++. ...+.+..+..++++++++.++|.+..++++.+|||||||||+|||||+.+|++|||
T Consensus       104 ~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllL  183 (263)
T 2olj_A          104 MVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLF  183 (263)
T ss_dssp             EECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             EEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence            9999999999999999999864 444555555567789999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         157 DEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       157 DEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      ||||+|||+.+++.++++|++++ +|+|||++|||++++.++||++++|++|++++.|+++++..
T Consensus       184 DEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  248 (263)
T 2olj_A          184 DEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD  248 (263)
T ss_dssp             ESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            99999999999999999999985 59999999999999999999999999999999999877643

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=4.4e-63  Score=431.25  Aligned_cols=220  Identities=28%  Similarity=0.437  Sum_probs=201.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++||+++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++......+++.|||+|
T Consensus        16 l~i~~l~~~y~-~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~   94 (256)
T 1vpl_A           16 VVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLP   94 (256)
T ss_dssp             EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred             EEEEEEEEEEC-CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEc
Confidence            57999999996 47899999999999999999999999999999999999999999999999998654455678899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++.+||+||+.++...++....+..+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus        95 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt  174 (256)
T 1vpl_A           95 EEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPT  174 (256)
T ss_dssp             TTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             CCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            99999999999999999766555555555567899999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      +|||+.++..++++|++++ +|+|||++|||++++..+||++++|++|++++.|+++++...
T Consensus       175 s~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  236 (256)
T 1vpl_A          175 SGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER  236 (256)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence            9999999999999999985 599999999999999999999999999999999998877543

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=4.2e-63  Score=432.69  Aligned_cols=219  Identities=23%  Similarity=0.367  Sum_probs=198.5

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-----------Ch
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-----------DM   69 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-----------~~   69 (251)
                      |+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..           ..
T Consensus         7 l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~   85 (262)
T 1b0u_A            7 LHVIDLHKRYG-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK   85 (262)
T ss_dssp             EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred             EEEeeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccCh
Confidence            57899999996 4789999999999999999999999999999999999999999999999998851           11


Q ss_pred             ---HHhhcceEEEccCCCCCCCCCHHHHHHHHH-HhcCCChHHHHHHHHHHHHHcCCCcc-cCCCCCcCChhHHHHHHHH
Q psy7367          70 ---TTIRRSLGVCPQYNALFDKLTVEEHMWFYS-QLKQVPKDLAQLEISNMIVDLGIPHK-RTSLANTLSGGMQRKLSVA  144 (251)
Q Consensus        70 ---~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~kqrv~ia  144 (251)
                         ..+++.|||+||++.+++.+||+||+.++. ...+.+..+..+++.++++.++|.+. .++++.+|||||||||+||
T Consensus        86 ~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lA  165 (262)
T 1b0u_A           86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA  165 (262)
T ss_dssp             HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHH
T ss_pred             hhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHH
Confidence               235678999999999999999999999864 44455555556778999999999998 9999999999999999999


Q ss_pred             HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         145 MAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       145 ~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      |||+.+|++|||||||+|||+.+++.++++|++++ +|.|||++|||++++..+|||+++|++|++++.|+++++..
T Consensus       166 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  242 (262)
T 1b0u_A          166 RALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFG  242 (262)
T ss_dssp             HHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            99999999999999999999999999999999985 59999999999999999999999999999999999877643

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=9.6e-63  Score=421.16  Aligned_cols=212  Identities=22%  Similarity=0.339  Sum_probs=193.2

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChH---Hhh-cc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMT---TIR-RS   75 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~---~~~-~~   75 (251)
                      |+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ...   .++ ++
T Consensus         5 l~~~~l~~~y~~-~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~   83 (224)
T 2pcj_A            5 LRAENIKKVIRG-YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRK   83 (224)
T ss_dssp             EEEEEEEEEETT-EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHH
T ss_pred             EEEEeEEEEECC-EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCc
Confidence            478999999964 789999999999999999999999999999999999999999999999999854 221   233 67


Q ss_pred             eEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367          76 LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI  155 (251)
Q Consensus        76 i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll  155 (251)
                      |+|+||++.+++.+||+||+.++...++.+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||
T Consensus        84 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lll  163 (224)
T 2pcj_A           84 LGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLF  163 (224)
T ss_dssp             EEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEE
T ss_pred             EEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            99999999999999999999997766555555556778999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367         156 LDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  214 (251)
Q Consensus       156 lDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~  214 (251)
                      |||||+|||+.++..++++|++++ +|.|||++|||++++ .+||++++|++|++++.|+
T Consensus       164 LDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~  222 (224)
T 2pcj_A          164 ADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT  222 (224)
T ss_dssp             EESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence            999999999999999999999985 599999999999998 7999999999999998875

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=6.8e-63  Score=424.97  Aligned_cols=217  Identities=24%  Similarity=0.356  Sum_probs=191.8

Q ss_pred             CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHH---h-
Q psy7367           1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTT---I-   72 (251)
Q Consensus         1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~---~-   72 (251)
                      |+++||+++|+++   .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ....   . 
T Consensus         2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   81 (235)
T 3tif_A            2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR   81 (235)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence            5799999999632   359999999999999999999999999999999999999999999999999864 2222   2 


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHHHcCCCcc-cCCCCCcCChhHHHHHHHHHHHc
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLK---QVPKDLAQLEISNMIVDLGIPHK-RTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      ++.|||+||++.+++.+||+||+.++....   .....+..+++.++++.+++.+. .++++.+|||||||||+|||||+
T Consensus        82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~  161 (235)
T 3tif_A           82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALA  161 (235)
T ss_dssp             HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred             hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHH
Confidence            356999999999999999999999976543   34555666788999999999875 49999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      .+|++|||||||+|||+.++..++++|++++ + |+|||+||||++.+ .+|||+++|++|+++..++++++
T Consensus       162 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~~~~~~  232 (235)
T 3tif_A          162 NNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKLRGF  232 (235)
T ss_dssp             TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEECC--
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEcChhhh
Confidence            9999999999999999999999999999984 4 99999999999965 79999999999999998876543

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=1.8e-62  Score=444.65  Aligned_cols=217  Identities=24%  Similarity=0.402  Sum_probs=201.2

Q ss_pred             CEEEeEEEEe-CCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEE
Q psy7367           1 MAIQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y-~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v   79 (251)
                      |+++||+|+| ++ +++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.... ..++.||||
T Consensus        15 l~~~~l~~~y~g~-~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~~r~ig~v   92 (355)
T 1z47_A           15 IEFVGVEKIYPGG-ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP-PQKRNVGLV   92 (355)
T ss_dssp             EEEEEEEECCTTS-TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC-GGGSSEEEE
T ss_pred             EEEEEEEEEEcCC-CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCC-hhhCcEEEE
Confidence            5789999999 64 67999999999999999999999999999999999999999999999999985422 346789999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP  159 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEP  159 (251)
                      ||++.+|+++||+||+.|+...++.+..+.+++++++++.++|.++.++++.+|||||||||+|||||+.+|++||||||
T Consensus        93 ~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP  172 (355)
T 1z47_A           93 FQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEP  172 (355)
T ss_dssp             CGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred             ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            99999999999999999988776666666677899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         160 TSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       160 t~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |++||+..++.+++.|+++. + |.|||++|||++++..+|||+++|++|+++..|+++++.
T Consensus       173 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~  234 (355)
T 1z47_A          173 FAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVY  234 (355)
T ss_dssp             TCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            99999999999999999984 4 999999999999999999999999999999999987663

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=3.2e-62  Score=444.26  Aligned_cols=217  Identities=26%  Similarity=0.407  Sum_probs=200.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++|+|+ ++++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..... .++.|||||
T Consensus         4 l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~-~~r~ig~v~   81 (362)
T 2it1_A            4 IKLENIVKKFG-NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPP-KDRNVGLVF   81 (362)
T ss_dssp             EEEEEEEEESS-SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG-GGTTEEEEC
T ss_pred             EEEEeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH-hHCcEEEEe
Confidence            47899999996 4789999999999999999999999999999999999999999999999999854222 357899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+|+++||+||+.|+.+.++.+..+.+++++++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||
T Consensus        82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~  161 (362)
T 2it1_A           82 QNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPL  161 (362)
T ss_dssp             TTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGG
T ss_pred             cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence            99999999999999999887766666666778999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      ++||+..+..+++.|+++. + |.|+|++|||++++..+|||+++|++|+++..|+++++.
T Consensus       162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~  222 (362)
T 2it1_A          162 SNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVY  222 (362)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            9999999999999999984 4 999999999999999999999999999999999987663

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=1.9e-62  Score=445.38  Aligned_cols=217  Identities=27%  Similarity=0.377  Sum_probs=199.0

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++|+|+ ++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... ..++.|||||
T Consensus         4 l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~~r~ig~v~   81 (359)
T 2yyz_A            4 IRVVNLKKYFG-KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIP-PKYREVGMVF   81 (359)
T ss_dssp             EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGTTEEEEC
T ss_pred             EEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCC-hhhCcEEEEe
Confidence            47899999996 478999999999999999999999999999999999999999999999999985422 2357899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+|+++||+||+.|+.+.++.+..+.+++++++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||
T Consensus        82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~  161 (359)
T 2yyz_A           82 QNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPL  161 (359)
T ss_dssp             SSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence            99999999999999999876555544555567999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      ++||+..++.+++.|+++. + |.|+|++|||++++..+|||+++|++|+++..|+++++.
T Consensus       162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~  222 (359)
T 2yyz_A          162 SNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVY  222 (359)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            9999999999999999984 4 999999999999999999999999999999999987663

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=2.5e-62  Score=428.75  Aligned_cols=215  Identities=24%  Similarity=0.372  Sum_probs=196.3

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      |+++|++++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ....+++.++|+
T Consensus        12 l~~~~l~~~~~-~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v   90 (266)
T 4g1u_C           12 LEASHLHYHVQ-QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVM   90 (266)
T ss_dssp             EEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEE
T ss_pred             EEEEeEEEEeC-CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEE
Confidence            47899999996 4789999999999999999999999999999999999999999999999999864 344566789999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHcc------CCCE
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIG------GSRT  153 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~------~p~l  153 (251)
                      ||++.+++.+||+||+.++...+.  ..+.+++++++++.+++.+..++++.+|||||||||+|||||+.      +|++
T Consensus        91 ~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~l  168 (266)
T 4g1u_C           91 RQYSELAFPFSVSEVIQMGRAPYG--GSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRW  168 (266)
T ss_dssp             CSCCCCCSCCBHHHHHHGGGTTSC--STTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEE
T ss_pred             ecCCccCCCCCHHHHHHhhhhhcC--cHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence            999998888999999998765432  23345678999999999999999999999999999999999999      9999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         154 VILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       154 lllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      |||||||+|||+.++..++++|++++ + ++|||++|||++++..+|||+++|++|++++.|+++++
T Consensus       169 LllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~  235 (266)
T 4g1u_C          169 LFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEV  235 (266)
T ss_dssp             EEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            99999999999999999999999985 4 67999999999999999999999999999999998765

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=1.7e-62  Score=427.64  Aligned_cols=216  Identities=22%  Similarity=0.331  Sum_probs=195.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-h-HHhhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-M-TTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~-~~~~~~i~~   78 (251)
                      |+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... . ...++.|+|
T Consensus         8 l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~   86 (257)
T 1g6h_A            8 LRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVR   86 (257)
T ss_dssp             EEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEE
T ss_pred             EEEeeeEEEEC-CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence            57899999996 47899999999999999999999999999999999999999999999999998542 2 234678999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHh--cC-----------CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQL--KQ-----------VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAM  145 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~--~~-----------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~  145 (251)
                      +||++.+++.+||+||+.++...  .+           ....+..++++++++.+++.+..++++.+|||||||||+|||
T Consensus        87 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAr  166 (257)
T 1g6h_A           87 TFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGR  166 (257)
T ss_dssp             CCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred             EccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHH
Confidence            99999999999999999986543  12           233445567899999999999999999999999999999999


Q ss_pred             HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHH
Q psy7367         146 AFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF  217 (251)
Q Consensus       146 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~  217 (251)
                      ||+.+|++|||||||+|||+.+++.++++|++++ +|+|||++|||++++..+|||+++|++|++++.|++++
T Consensus       167 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  239 (257)
T 1g6h_A          167 ALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE  239 (257)
T ss_dssp             HHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred             HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence            9999999999999999999999999999999985 59999999999999999999999999999999998776

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=5.3e-62  Score=444.63  Aligned_cols=218  Identities=27%  Similarity=0.389  Sum_probs=200.7

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-----hHHhhcc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-----MTTIRRS   75 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~~   75 (251)
                      |+++||+|+|+ ++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++...     ....+++
T Consensus         4 l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~   82 (372)
T 1g29_1            4 VRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD   82 (372)
T ss_dssp             EEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred             EEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence            57899999996 47899999999999999999999999999999999999999999999999987430     1123578


Q ss_pred             eEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367          76 LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI  155 (251)
Q Consensus        76 i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll  155 (251)
                      ||||||++.+|+++||+||+.|+.+.++.+..+.+++++++++.++|.++.++++.+|||||||||+|||||+.+|++||
T Consensus        83 ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL  162 (372)
T 1g29_1           83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFL  162 (372)
T ss_dssp             EEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred             EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            99999999999999999999998877666666667789999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         156 LDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       156 lDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |||||++||+..+..+++.|+++. + |.|+|++|||++++..+|||+++|++|+++..|+++++.
T Consensus       163 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~  228 (372)
T 1g29_1          163 MDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY  228 (372)
T ss_dssp             EECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             ECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence            999999999999999999999984 4 999999999999999999999999999999999987663

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=1.7e-62  Score=445.23  Aligned_cols=218  Identities=26%  Similarity=0.375  Sum_probs=200.4

Q ss_pred             CEEEeEEEEeCCCcc--eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC----hHHhhc
Q psy7367           1 MAIQNLSKRFPNGKL--AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD----MTTIRR   74 (251)
Q Consensus         1 l~i~~l~~~y~~~~~--il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~----~~~~~~   74 (251)
                      |+++||+|+|++ ++  +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++...    ....++
T Consensus         4 l~i~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r   82 (353)
T 1oxx_K            4 IIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR   82 (353)
T ss_dssp             EEEEEEEEEEGG-GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred             EEEEeEEEEECC-EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence            478999999964 67  99999999999999999999999999999999999999999999999987431    223467


Q ss_pred             ceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEE
Q psy7367          75 SLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTV  154 (251)
Q Consensus        75 ~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ll  154 (251)
                      +||||||++.+|+++||+||+.|+...++.+..+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|++|
T Consensus        83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lL  162 (353)
T 1oxx_K           83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLL  162 (353)
T ss_dssp             CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred             CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence            89999999999999999999999877666666666778999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         155 ILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       155 llDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      ||||||++||+..+..+++.|+++. + |.|||++|||++++..+|||+++|++|+++..|+++++.
T Consensus       163 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~  229 (353)
T 1oxx_K          163 LLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY  229 (353)
T ss_dssp             EEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            9999999999999999999999984 4 999999999999999999999999999999999987663

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=5.2e-62  Score=444.32  Aligned_cols=217  Identities=30%  Similarity=0.396  Sum_probs=193.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++||+|+|+ ++++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... ..+++|||||
T Consensus        12 l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~~r~ig~v~   89 (372)
T 1v43_A           12 VKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP-PKDRNISMVF   89 (372)
T ss_dssp             EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGGTEEEEE
T ss_pred             EEEEEEEEEEC-CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCC-hhhCcEEEEe
Confidence            47899999996 478999999999999999999999999999999999999999999999999985422 2357899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+|+++||+||+.|+.+.++.+..+.+++++++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||
T Consensus        90 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~  169 (372)
T 1v43_A           90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL  169 (372)
T ss_dssp             C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            99999999999999999876666666666778999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      ++||+..+..+++.|+++. + |.|+|++|||++++..+|||+++|++|+++..|+++++.
T Consensus       170 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~  230 (372)
T 1v43_A          170 SNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVY  230 (372)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            9999999999999999984 4 999999999999999999999999999999999987663

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=9.9e-62  Score=418.89  Aligned_cols=217  Identities=24%  Similarity=0.386  Sum_probs=194.2

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHH-hhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTT-IRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~-~~~~i~~   78 (251)
                      ++++||+++|++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .... .+++|+|
T Consensus         7 l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~   85 (240)
T 1ji0_A            7 LEVQSLHVYYGA-IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIAL   85 (240)
T ss_dssp             EEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEE
T ss_pred             EEEEeEEEEECC-eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEE
Confidence            478999999964 789999999999999999999999999999999999999999999999999854 2222 3456999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC-CCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG-IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD  157 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD  157 (251)
                      +||++.+++.+||+||+.++... .....+..++++++++.++ +.+..++++.+|||||||||+|||||+.+|++||||
T Consensus        86 v~q~~~l~~~ltv~enl~~~~~~-~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD  164 (240)
T 1ji0_A           86 VPEGRRIFPELTVYENLMMGAYN-RKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMD  164 (240)
T ss_dssp             ECSSCCCCTTSBHHHHHHGGGTT-CCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             EecCCccCCCCcHHHHHHHhhhc-CCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence            99999999999999999886422 2223344567889999995 988899999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         158 EPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       158 EPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |||+|||+.+++.++++|++++ +|+|||++|||++++..+|||+++|++|++++.|+++++.
T Consensus       165 EPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  227 (240)
T 1ji0_A          165 EPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL  227 (240)
T ss_dssp             CTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence            9999999999999999999985 6999999999999999999999999999999999887653

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=1.3e-61  Score=438.30  Aligned_cols=213  Identities=27%  Similarity=0.411  Sum_probs=195.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++|+|++ + +|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.... ..+++|||||
T Consensus         2 l~~~~l~~~y~~-~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~-~~~r~ig~v~   78 (348)
T 3d31_A            2 IEIESLSRKWKN-F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS-PEKHDIAFVY   78 (348)
T ss_dssp             EEEEEEEEECSS-C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSC-HHHHTCEEEC
T ss_pred             EEEEEEEEEECC-E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCc-hhhCcEEEEe
Confidence            578999999964 6 999999999999999999999999999999999999999999999999985422 3467899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+|+++||+||+.|+...++.+..   ++++++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||
T Consensus        79 Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~  155 (348)
T 3d31_A           79 QNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPL  155 (348)
T ss_dssp             TTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred             cCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence            999999999999999998766554433   67889999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         161 SGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      ++||+..++.+++.|++++  .|.|+|++|||++++..+|||+++|++|+++..|+++++.
T Consensus       156 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~  216 (348)
T 3d31_A          156 SALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF  216 (348)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            9999999999999999984  3999999999999999999999999999999999987663

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=2.7e-61  Score=416.24  Aligned_cols=213  Identities=25%  Similarity=0.360  Sum_probs=192.3

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|++++|++   +|+|+||+|++ |+++|+||||||||||+|+|+|+++|++|+|.++|+++... ...+++|||+|
T Consensus         2 l~~~~l~~~y~~---~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~i~~v~   76 (240)
T 2onk_A            2 FLKVRAEKRLGN---FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL-PPERRGIGFVP   76 (240)
T ss_dssp             CEEEEEEEEETT---EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS-CTTTSCCBCCC
T ss_pred             EEEEEEEEEeCC---EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC-chhhCcEEEEc
Confidence            689999999953   59999999999 99999999999999999999999999999999999998532 23467899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++.+||+||+.++...++  ....+++++++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus        77 q~~~l~~~ltv~enl~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt  154 (240)
T 2onk_A           77 QDYALFPHLSVYRNIAYGLRNVE--RVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPL  154 (240)
T ss_dssp             SSCCCCTTSCHHHHHHTTCTTSC--HHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred             CCCccCCCCcHHHHHHHHHHHcC--CchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            99999999999999998654332  1222567889999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      +|||+.+++.++++|++++ + |+|||++|||++++..+||++++|++|++++.|+++++..
T Consensus       155 s~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  216 (240)
T 2onk_A          155 SAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS  216 (240)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            9999999999999999984 4 9999999999999999999999999999999999887643

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=8.4e-61  Score=418.98  Aligned_cols=218  Identities=23%  Similarity=0.359  Sum_probs=194.0

Q ss_pred             CEEEeEEEEeC-CC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcce
Q psy7367           1 MAIQNLSKRFP-NG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSL   76 (251)
Q Consensus         1 l~i~~l~~~y~-~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i   76 (251)
                      |+++|++++|+ ++   +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...  .+++.|
T Consensus         3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~--~~~~~i   80 (266)
T 2yz2_A            3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY--EIRRNI   80 (266)
T ss_dssp             EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH--HHGGGE
T ss_pred             EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH--HhhhhE
Confidence            57899999996 23   5799999999999999999999999999999999999999999999999988532  567789


Q ss_pred             EEEccCC-CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC--cccCCCCCcCChhHHHHHHHHHHHccCCCE
Q psy7367          77 GVCPQYN-ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP--HKRTSLANTLSGGMQRKLSVAMAFIGGSRT  153 (251)
Q Consensus        77 ~~v~q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~kqrv~ia~al~~~p~l  153 (251)
                      ||+||++ .+++.+||+||+.++.... .+..+..++++++++.++|.  +..++++.+|||||||||+|||||+.+|++
T Consensus        81 ~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l  159 (266)
T 2yz2_A           81 GIAFQYPEDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDI  159 (266)
T ss_dssp             EEECSSGGGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred             EEEeccchhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            9999996 4566789999999865432 22223345688999999999  899999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         154 VILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       154 lllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      |||||||+|||+.+++.++++|++++ +|.|||++|||++++..+||++++|++|+++..|+++++...
T Consensus       160 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  228 (266)
T 2yz2_A          160 LILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK  228 (266)
T ss_dssp             EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             EEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            99999999999999999999999985 599999999999999999999999999999999998776543

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=2e-60  Score=419.27  Aligned_cols=217  Identities=22%  Similarity=0.307  Sum_probs=190.8

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCC--C-ChHHhhcceE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR--T-DMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~--~-~~~~~~~~i~   77 (251)
                      |+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.  . ....++++|+
T Consensus        22 l~~~~l~~~y~-~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~  100 (279)
T 2ihy_A           22 IQLDQIGRMKQ-GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIG  100 (279)
T ss_dssp             EEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEE
T ss_pred             EEEEeEEEEEC-CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEE
Confidence            47899999996 478999999999999999999999999999999999999999999999999885  3 3345678899


Q ss_pred             EEccCCCCC--CCCCHHHHHHHHHH----hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367          78 VCPQYNALF--DKLTVEEHMWFYSQ----LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGS  151 (251)
Q Consensus        78 ~v~q~~~l~--~~ltv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p  151 (251)
                      |+||++.++  +.+||+||+.++..    +.+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|
T Consensus       101 ~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p  180 (279)
T 2ihy_A          101 FVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQP  180 (279)
T ss_dssp             EECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred             EEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCC
Confidence            999997643  35699999987532    112223344567889999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeE--EEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         152 RTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTV--ILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       152 ~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~ti--ii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      ++|||||||+|||+.+++.++++|++++ +|+||  |++|||++++..+||++++|++|++++.|+++++
T Consensus       181 ~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  250 (279)
T 2ihy_A          181 QVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDI  250 (279)
T ss_dssp             SEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred             CEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999999999985 48999  9999999999999999999999999999988655

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=1.5e-59  Score=407.54  Aligned_cols=216  Identities=19%  Similarity=0.276  Sum_probs=186.8

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCC--CCCCeeEEEEcceeCCC-ChHH-hhcce
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM--LPVSSGTAKIYNHDIRT-DMTT-IRRSL   76 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl--~~p~~G~i~~~g~~~~~-~~~~-~~~~i   76 (251)
                      ++++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|+++|+++.. .... .+..+
T Consensus         4 l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i   82 (250)
T 2d2e_A            4 LEIRDLWASID-GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL   82 (250)
T ss_dssp             EEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred             EEEEeEEEEEC-CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence            47899999996 47899999999999999999999999999999999999  78999999999999854 2222 24569


Q ss_pred             EEEccCCCCCCCCCHHHHHHHHHH-hcC--CChHHHHHHHHHHHHHcCCC-cccCCCCCc-CChhHHHHHHHHHHHccCC
Q psy7367          77 GVCPQYNALFDKLTVEEHMWFYSQ-LKQ--VPKDLAQLEISNMIVDLGIP-HKRTSLANT-LSGGMQRKLSVAMAFIGGS  151 (251)
Q Consensus        77 ~~v~q~~~l~~~ltv~e~l~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~kqrv~ia~al~~~p  151 (251)
                      +|+||++.+|+.+||+||+.++.. ..+  ....+..+++.++++.+++. +..++++.+ |||||||||+|||||+.+|
T Consensus        83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p  162 (250)
T 2d2e_A           83 FLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEP  162 (250)
T ss_dssp             CCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCC
T ss_pred             EEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCC
Confidence            999999999999999999988653 222  23334456788999999994 788999999 9999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhh-cCEEEEeeCCEEEeecCHHH
Q psy7367         152 RTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLL-GDRIAIIAAGKLQCCGSSVF  217 (251)
Q Consensus       152 ~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~-~d~i~~l~~G~i~~~g~~~~  217 (251)
                      ++|||||||+|||+.+++.++++|++++ +|+|||++|||++++..+ ||++++|++|++++.|+++.
T Consensus       163 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~  230 (250)
T 2d2e_A          163 TYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL  230 (250)
T ss_dssp             SEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred             CEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence            9999999999999999999999999985 589999999999999988 59999999999999999873

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=100.00  E-value=3.9e-59  Score=404.37  Aligned_cols=212  Identities=24%  Similarity=0.391  Sum_probs=184.0

Q ss_pred             CEEEeEEEEe-CCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y-~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++||+++| ++++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ....+++.|+|
T Consensus         8 ~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~   87 (247)
T 2ff7_A            8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV   87 (247)
T ss_dssp             EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred             eeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEE
Confidence            4789999999 324679999999999999999999999999999999999999999999999999864 34456778999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCccc-----------CCCCCcCChhHHHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKR-----------TSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~kqrv~ia~al  147 (251)
                      +||++.+|+ .||+||+.++..  ...    .+++.++++.+++.+..           ++++.+|||||||||+|||||
T Consensus        88 v~Q~~~l~~-~tv~enl~~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL  160 (247)
T 2ff7_A           88 VLQDNVLLN-RSIIDNISLANP--GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARAL  160 (247)
T ss_dssp             ECSSCCCTT-SBHHHHHTTTCT--TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHH
T ss_pred             EeCCCcccc-ccHHHHHhccCC--CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHH
Confidence            999999886 599999987531  112    23455667777665443           455689999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      +.+|++|||||||++||+.++..++++|+++++|+|||++|||++.+.. ||++++|++|++++.|+++++..
T Consensus       161 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  232 (247)
T 2ff7_A          161 VNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLS  232 (247)
T ss_dssp             TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT-SSEEEEEETTEEEEEECHHHHHT
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHh
Confidence            9999999999999999999999999999998779999999999999864 99999999999999999887643

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=100.00  E-value=5e-59  Score=408.78  Aligned_cols=217  Identities=23%  Similarity=0.358  Sum_probs=188.5

Q ss_pred             CEEEeEEEEeCC--CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367           1 MAIQNLSKRFPN--GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~--~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~   77 (251)
                      |+++||+++|++  .+++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ....+++.|+
T Consensus        17 l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~   96 (271)
T 2ixe_A           17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVA   96 (271)
T ss_dssp             EEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEE
T ss_pred             EEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEE
Confidence            478999999963  2679999999999999999999999999999999999999999999999999853 3345667899


Q ss_pred             EEccCCCCCCCCCHHHHHHHHHHhcCCChHHH-----HHHHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccC
Q psy7367          78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLA-----QLEISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGG  150 (251)
Q Consensus        78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~  150 (251)
                      |+||++.+|+ .||+||+.++..... .....     ...+.++++.+  ++....++++.+|||||||||+|||||+.+
T Consensus        97 ~v~Q~~~l~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~  174 (271)
T 2ixe_A           97 AVGQEPLLFG-RSFRENIAYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK  174 (271)
T ss_dssp             EECSSCCCCS-SBHHHHHHTTCSSCC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred             EEecCCcccc-ccHHHHHhhhcccCC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence            9999999887 599999988643211 10111     12356778888  788888999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         151 SRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       151 p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      |++|||||||+|||+.++..++++|+++. + |+|||++|||++++.. ||++++|++|++++.|+++++..
T Consensus       175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~  245 (271)
T 2ixe_A          175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQGTHLQLME  245 (271)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEEECHHHHHH
T ss_pred             CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHh
Confidence            99999999999999999999999999985 3 8999999999999875 99999999999999999877643

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=1.7e-58  Score=404.63  Aligned_cols=218  Identities=21%  Similarity=0.294  Sum_probs=190.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCC--CCCCeeEEEEcceeCCC-ChHHh-hcce
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM--LPVSSGTAKIYNHDIRT-DMTTI-RRSL   76 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl--~~p~~G~i~~~g~~~~~-~~~~~-~~~i   76 (251)
                      |+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|+++|+++.. ..... ++.|
T Consensus        21 l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i   99 (267)
T 2zu0_C           21 LSIKDLHVSVE-DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGI   99 (267)
T ss_dssp             EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTE
T ss_pred             EEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCE
Confidence            47899999996 47899999999999999999999999999999999999  46899999999999853 22222 4569


Q ss_pred             EEEccCCCCCCCCCHHHHHHHHHH-h---cC---CChHHHHHHHHHHHHHcCCC-cccCCCCC-cCChhHHHHHHHHHHH
Q psy7367          77 GVCPQYNALFDKLTVEEHMWFYSQ-L---KQ---VPKDLAQLEISNMIVDLGIP-HKRTSLAN-TLSGGMQRKLSVAMAF  147 (251)
Q Consensus        77 ~~v~q~~~l~~~ltv~e~l~~~~~-~---~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgG~kqrv~ia~al  147 (251)
                      +|+||++.+++.+||.||+.+... .   .+   ....+..++++++++.+++. ...++++. +|||||||||+|||||
T Consensus       100 ~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL  179 (267)
T 2zu0_C          100 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA  179 (267)
T ss_dssp             EEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHH
T ss_pred             EEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHH
Confidence            999999999999999999987542 1   11   23344456789999999996 57788887 5999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhh-cCEEEEeeCCEEEeecCHHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLL-GDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +.+|++|||||||+|||+.+++.++++|++++ +|+|||++|||++++..+ |||+++|++|++++.|+++++.
T Consensus       180 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  253 (267)
T 2zu0_C          180 VLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK  253 (267)
T ss_dssp             HHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHH
T ss_pred             HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHh
Confidence            99999999999999999999999999999985 489999999999999886 9999999999999999887653

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=1.6e-58  Score=401.84  Aligned_cols=205  Identities=22%  Similarity=0.355  Sum_probs=185.0

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++++|++++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.            +++.|+|+|
T Consensus         5 l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~------------~~~~i~~v~   72 (253)
T 2nq2_C            5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE------------VYQSIGFVP   72 (253)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE------------ECSCEEEEC
T ss_pred             EEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE------------EeccEEEEc
Confidence            47899999996247899999999999999999999999999999999999999999998            245799999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhc-C---CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLK-Q---VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL  156 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~-~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll  156 (251)
                      |++.+++.+||+||+.++.... +   .......++++++++.+++.+..++++.+|||||||||+|||||+.+|++|||
T Consensus        73 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllL  152 (253)
T 2nq2_C           73 QFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILL  152 (253)
T ss_dssp             SCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            9999998999999999865322 1   12334456789999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         157 DEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       157 DEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      ||||+|||+.+++.++++|++++ + |+|||++|||++++..+||++++|++|+ ++.|+++++
T Consensus       153 DEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~  215 (253)
T 2nq2_C          153 DEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNI  215 (253)
T ss_dssp             SSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence            99999999999999999999984 5 8999999999999999999999999999 888887654

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=100.00  E-value=7.3e-59  Score=413.82  Aligned_cols=213  Identities=24%  Similarity=0.401  Sum_probs=186.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      |+++||+++|++++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....+|+.||||
T Consensus        54 i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v  133 (306)
T 3nh6_A           54 IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVV  133 (306)
T ss_dssp             EEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEE
T ss_pred             EEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEE
Confidence            5789999999655789999999999999999999999999999999999999999999999999965 455678899999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHc-----------CCCcccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL-----------GIPHKRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      ||++.+|+ .||+||+.++....  ...    ++.++++.+           |+....++++.+|||||||||+|||||+
T Consensus       134 ~Q~~~lf~-~Tv~eNi~~~~~~~--~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~  206 (306)
T 3nh6_A          134 PQDTVLFN-DTIADNIRYGRVTA--GND----EVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTIL  206 (306)
T ss_dssp             CSSCCCCS-EEHHHHHHTTSTTC--CHH----HHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred             ecCCccCc-ccHHHHHHhhcccC--CHH----HHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHH
Confidence            99999986 59999998864322  122    233344443           4445556777899999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      .+|++|||||||++||+.+...+++.|.++.+++|||+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       207 ~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~el~~~  278 (306)
T 3nh6_A          207 KAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGRHEALLSR  278 (306)
T ss_dssp             HCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEEEEECHHHHHHH
T ss_pred             hCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHHhc
Confidence            999999999999999999999999999999878999999999999987 999999999999999999877543

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=100.00  E-value=2.5e-58  Score=399.75  Aligned_cols=207  Identities=18%  Similarity=0.269  Sum_probs=187.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      ++++|++++     ++|+++||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|+++.. ....++++++|+
T Consensus         5 l~~~~l~~~-----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v   78 (249)
T 2qi9_C            5 MQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYL   78 (249)
T ss_dssp             EEEEEEEET-----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred             EEEEceEEE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEE
Confidence            468899875     5899999999999999999999999999999999999999 999999998853 334567789999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC-------
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR-------  152 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~-------  152 (251)
                      ||++.+++.+||+||+.++.. ....    .+++.++++.+++.+..++++.+|||||||||+|||||+.+|+       
T Consensus        79 ~q~~~~~~~~tv~e~l~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~  153 (249)
T 2qi9_C           79 SQQQTPPFATPVWHYLTLHQH-DKTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQ  153 (249)
T ss_dssp             CSCCCCCTTCBHHHHHHTTCS-STTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCC
T ss_pred             CCCCccCCCCcHHHHHHHhhc-cCCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCe
Confidence            999999999999999987531 1111    4568899999999999999999999999999999999999999       


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         153 TVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       153 llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      +|||||||+|||+.+++.++++|++++ +|+|||++|||++++..+||++++|++|++++.|+++++
T Consensus       154 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  220 (249)
T 2qi9_C          154 LLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEV  220 (249)
T ss_dssp             EEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred             EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999999984 699999999999999999999999999999999988765

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=100.00  E-value=1.5e-58  Score=399.72  Aligned_cols=213  Identities=20%  Similarity=0.318  Sum_probs=185.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      |+++|++++|++++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....++++|+|+
T Consensus         2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v   81 (243)
T 1mv5_A            2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV   81 (243)
T ss_dssp             EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred             EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEE
Confidence            5789999999434679999999999999999999999999999999999999999999999999853 223456789999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCC-----------CCCcCChhHHHHHHHHHHHc
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTS-----------LANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~kqrv~ia~al~  148 (251)
                      ||++.+|+ .||+||+.++.. ....    .+++.++++.+++.+..++           ++.+|||||||||+|||||+
T Consensus        82 ~q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~  155 (243)
T 1mv5_A           82 SQDSAIMA-GTIRENLTYGLE-GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFL  155 (243)
T ss_dssp             CCSSCCCC-EEHHHHTTSCTT-SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred             cCCCcccc-ccHHHHHhhhcc-CCCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHh
Confidence            99999887 599999987522 1112    2356788888888766544           46799999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      .+|++|||||||+|||+.+++.+++.|+++++|+|||++|||++.+. .||++++|++|++++.|+++++..
T Consensus       156 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~  226 (243)
T 1mv5_A          156 RNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVA  226 (243)
T ss_dssp             HCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHHHH
T ss_pred             cCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence            99999999999999999999999999999877999999999999886 599999999999999999876643

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=8.5e-59  Score=394.25  Aligned_cols=199  Identities=18%  Similarity=0.256  Sum_probs=178.7

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++|++++|+ + ++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.    ..++.|+|+|
T Consensus        11 l~~~~ls~~y~-~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~----~~~~~i~~v~   84 (214)
T 1sgw_A           11 LEIRDLSVGYD-K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT----KVKGKIFFLP   84 (214)
T ss_dssp             EEEEEEEEESS-S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG----GGGGGEEEEC
T ss_pred             EEEEEEEEEeC-C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh----hhcCcEEEEe
Confidence            57999999996 4 8999999999999999999999999999999999999999999999999874    2567899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++.+||+||+.++...++. ..+ .+++.++++.+++.+. ++++.+|||||||||+|||||+.+|++|||||||
T Consensus        85 q~~~~~~~~tv~enl~~~~~~~~~-~~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt  161 (214)
T 1sgw_A           85 EEIIVPRKISVEDYLKAVASLYGV-KVN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV  161 (214)
T ss_dssp             SSCCCCTTSBHHHHHHHHHHHTTC-CCC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred             CCCcCCCCCCHHHHHHHHHHhcCC-chH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence            999999999999999987655432 112 4568899999999988 9999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEE
Q psy7367         161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKL  209 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i  209 (251)
                      ++||+.++..++++|++++ +|+|||++|||++++..+||+++.+ .|+|
T Consensus       162 s~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~  210 (214)
T 1sgw_A          162 VAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI  210 (214)
T ss_dssp             TTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred             cCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence            9999999999999999985 4899999999999999999998755 4554

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=1.1e-57  Score=398.67  Aligned_cols=208  Identities=24%  Similarity=0.324  Sum_probs=187.8

Q ss_pred             CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceE
Q psy7367           1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~   77 (251)
                      ++++|++++|+++   +++|+++||+|+ ||+++|+||||||||||||+|+|++ |++|+|.++|+++... .. +++++
T Consensus         2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~-~~-~~~i~   77 (263)
T 2pjz_A            2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI-RN-YIRYS   77 (263)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC-SC-CTTEE
T ss_pred             EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch-HH-hhheE
Confidence            5799999999531   679999999999 9999999999999999999999999 9999999999987533 23 67899


Q ss_pred             -EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367          78 -VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI  155 (251)
Q Consensus        78 -~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll  155 (251)
                       |+||++.+  .+||+||+.++...+...    .+++.++++.+++. +..++++.+|||||||||+|||||+.+|++||
T Consensus        78 ~~v~Q~~~l--~~tv~enl~~~~~~~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll  151 (263)
T 2pjz_A           78 TNLPEAYEI--GVTVNDIVYLYEELKGLD----RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVG  151 (263)
T ss_dssp             ECCGGGSCT--TSBHHHHHHHHHHHTCCC----HHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred             EEeCCCCcc--CCcHHHHHHHhhhhcchH----HHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence             99999987  789999999876543221    34688999999999 99999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcC-EEEEeeCCEEEeecCHHHHHh
Q psy7367         156 LDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGD-RIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       156 lDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d-~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      |||||++||+.+++.++++|+++++  |||++|||++++..+|| ++++|++|++++.|+++++..
T Consensus       152 LDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~  215 (263)
T 2pjz_A          152 LDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE  215 (263)
T ss_dssp             EECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred             EECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence            9999999999999999999999865  99999999999999999 999999999999999887753

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=100.00  E-value=6.7e-57  Score=393.06  Aligned_cols=211  Identities=20%  Similarity=0.361  Sum_probs=182.5

Q ss_pred             CEEEeEEEEeCCC--cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367           1 MAIQNLSKRFPNG--KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~~--~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~   77 (251)
                      |+++||+++|++.  +++|+++||+|++||+++|+||||||||||+|+|+|+++| +|+|.++|+++.. ....+++.|+
T Consensus        18 l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~   96 (260)
T 2ghi_A           18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIG   96 (260)
T ss_dssp             EEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEE
T ss_pred             EEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEE
Confidence            5789999999642  4699999999999999999999999999999999999987 8999999999853 3445678899


Q ss_pred             EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCcCChhHHHHHHHHHH
Q psy7367          78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK-----------RTSLANTLSGGMQRKLSVAMA  146 (251)
Q Consensus        78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~kqrv~ia~a  146 (251)
                      |+||++.+|+ .||+||+.++..  ...    .+++.++++.+++.+.           .++++.+|||||||||+||||
T Consensus        97 ~v~Q~~~l~~-~tv~enl~~~~~--~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAra  169 (260)
T 2ghi_A           97 IVPQDTILFN-ETIKYNILYGKL--DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARC  169 (260)
T ss_dssp             EECSSCCCCS-EEHHHHHHTTCT--TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHH
T ss_pred             EEcCCCcccc-cCHHHHHhccCC--CCC----HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHH
Confidence            9999999886 599999987531  111    2345567777776432           346788999999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      |+.+|++|||||||++||+.++..++++|+++++++|||++|||++.+. .||++++|++|++++.|+++++..
T Consensus       170 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~  242 (260)
T 2ghi_A          170 LLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIVEKGTHKDLLK  242 (260)
T ss_dssp             HHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence            9999999999999999999999999999999877899999999999986 599999999999999999877643

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.1e-56  Score=411.52  Aligned_cols=209  Identities=22%  Similarity=0.360  Sum_probs=187.5

Q ss_pred             CEEEeEEEEeC-CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFP-NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~-~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      |+++||+|+|+ +++.+|+++||+|++||+++|+||||||||||||+|+|+++ ++|+|+++|+++.. ....+++.|+|
T Consensus        20 i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~   98 (390)
T 3gd7_A           20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGV   98 (390)
T ss_dssp             EEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEE
T ss_pred             EEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEE
Confidence            57999999994 24679999999999999999999999999999999999998 99999999999865 44556789999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCc-----------CChhHHHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANT-----------LSGGMQRKLSVAMAF  147 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----------LSgG~kqrv~ia~al  147 (251)
                      |||++.+|+ +||+||+.++.   ...    .+++.++++.++|.++.+++|.+           |||||||||+|||||
T Consensus        99 v~Q~~~lf~-~tv~enl~~~~---~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL  170 (390)
T 3gd7_A           99 IPQKVFIFS-GTFRKNLDPNA---AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSV  170 (390)
T ss_dssp             ESCCCCCCS-EEHHHHHCTTC---CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHH
T ss_pred             EcCCcccCc-cCHHHHhhhcc---ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHH
Confidence            999999997 69999996432   111    34678899999999999999998           999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +.+|++||||||||+||+..+..+++.|+++..++|+|++|||++.+ ..||||++|++|+++..|+++++.
T Consensus       171 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~el~  241 (390)
T 3gd7_A          171 LSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILELY  241 (390)
T ss_dssp             HTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG-TTCSEEEEEETTEEEEESSHHHHH
T ss_pred             hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence            99999999999999999999999999999887789999999998765 569999999999999999998764

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=100.00  E-value=1e-55  Score=378.78  Aligned_cols=199  Identities=25%  Similarity=0.374  Sum_probs=169.5

Q ss_pred             CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v   79 (251)
                      |+++|++++|++ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|            +|+|+
T Consensus         7 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g------------~i~~v   74 (229)
T 2pze_A            7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------RISFC   74 (229)
T ss_dssp             EEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS------------CEEEE
T ss_pred             EEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC------------EEEEE
Confidence            478999999952 46799999999999999999999999999999999999999999999987            39999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCcCChhHHHHHHHHHHHc
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK-----------RTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      ||++.+++. ||+||+.++...   ...    +..++++.+++.+.           .++++.+|||||||||+|||||+
T Consensus        75 ~q~~~~~~~-tv~enl~~~~~~---~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~  146 (229)
T 2pze_A           75 SQFSWIMPG-TIKENIIFGVSY---DEY----RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVY  146 (229)
T ss_dssp             CSSCCCCSB-CHHHHHHTTSCC---CHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHH
T ss_pred             ecCCcccCC-CHHHHhhccCCc---ChH----HHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHh
Confidence            999998885 999999875321   111    22334444444322           23456899999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHH-HhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELL-IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l-~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      .+|++|||||||+|||+.+++.+++.+ .++.+++|||++|||++++. .||++++|++|++++.|+++++..
T Consensus       147 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~  218 (229)
T 2pze_A          147 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN  218 (229)
T ss_dssp             SCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEEEEECHHHHHT
T ss_pred             cCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence            999999999999999999999999974 56656899999999999986 599999999999999999877643

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=100.00  E-value=1.5e-55  Score=379.58  Aligned_cols=202  Identities=25%  Similarity=0.371  Sum_probs=170.1

Q ss_pred             CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v   79 (251)
                      ++++|++++|++ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|            .|+|+
T Consensus         4 l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g------------~i~~v   71 (237)
T 2cbz_A            4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG------------SVAYV   71 (237)
T ss_dssp             EEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS------------CEEEE
T ss_pred             EEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC------------EEEEE
Confidence            479999999963 36799999999999999999999999999999999999999999999988            39999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHH---HHHHcCCC-----cccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISN---MIVDLGIP-----HKRTSLANTLSGGMQRKLSVAMAFIGGS  151 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~---~l~~~~l~-----~~~~~~~~~LSgG~kqrv~ia~al~~~p  151 (251)
                      ||++.+ +.+||+||+.++....   .... +++.+   +++.+++.     ...++++.+|||||||||+|||||+.+|
T Consensus        72 ~Q~~~~-~~~tv~enl~~~~~~~---~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p  146 (237)
T 2cbz_A           72 PQQAWI-QNDSLRENILFGCQLE---EPYY-RSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA  146 (237)
T ss_dssp             CSSCCC-CSEEHHHHHHTTSCCC---TTHH-HHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred             cCCCcC-CCcCHHHHhhCccccC---HHHH-HHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            999875 4789999998854321   1111 11211   22333332     2357889999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHH---hhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         152 RTVILDEPTSGVDPYSRRSIWELLI---KYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       152 ~llllDEPt~gLD~~~~~~l~~~l~---~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      ++|||||||+|||+.++..+++.|.   ++++|+|||++|||++.+. .||++++|++|++++.|+++++..
T Consensus       147 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~  217 (237)
T 2cbz_A          147 DIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKISEMGSYQELLA  217 (237)
T ss_dssp             SEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEEEEECHHHHHH
T ss_pred             CEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEEEeCCHHHHhh
Confidence            9999999999999999999999995   4445899999999999985 699999999999999999877643

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=100.00  E-value=4.8e-54  Score=412.93  Aligned_cols=213  Identities=22%  Similarity=0.390  Sum_probs=186.6

Q ss_pred             CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++|++++|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. +...+|++|+|
T Consensus       342 i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~  421 (582)
T 3b5x_A          342 VDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFAL  421 (582)
T ss_pred             EEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEE
Confidence            5789999999642 679999999999999999999999999999999999999999999999999854 44567889999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccC-----------CCCCcCChhHHHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRT-----------SLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~kqrv~ia~al  147 (251)
                      +||++.+|+. ||+||+.++.. ....    .+++.++++.+++.+..+           ++..+||||||||++|||||
T Consensus       422 v~Q~~~l~~~-tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral  495 (582)
T 3b5x_A          422 VSQNVHLFND-TIANNIAYAAE-GEYT----REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARAL  495 (582)
T ss_pred             EcCCCccccc-cHHHHHhccCC-CCCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHH
Confidence            9999999875 99999988531 1112    235667777777655443           45589999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      +.+|+++||||||++||+.+++.+.+.|+++.+|+|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus       496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~  567 (582)
T 3b5x_A          496 LRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIERGRHADLLA  567 (582)
T ss_pred             HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence            999999999999999999999999999999877999999999999987 699999999999999999987754

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=100.00  E-value=4.8e-54  Score=412.89  Aligned_cols=214  Identities=22%  Similarity=0.369  Sum_probs=187.0

Q ss_pred             CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++|++++|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. +...+|++|+|
T Consensus       342 i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~  421 (582)
T 3b60_A          342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVAL  421 (582)
T ss_dssp             EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEE
T ss_pred             EEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeE
Confidence            4789999999633 679999999999999999999999999999999999999999999999999865 44567889999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCcCChhHHHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK-----------RTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      +||++.+|+. ||+||+.++.. ....    .+++.++++.+++.+.           .++++.+||||||||++|||||
T Consensus       422 v~Q~~~l~~~-tv~eni~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral  495 (582)
T 3b60_A          422 VSQNVHLFND-TVANNIAYART-EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL  495 (582)
T ss_dssp             ECSSCCCCSS-BHHHHHHTTTT-SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred             EccCCcCCCC-CHHHHHhccCC-CCCC----HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence            9999999875 99999988531 1222    2346667777766443           4456689999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      +.+|+++|||||||+||+.+++.+.+.++++.+|+|+|++||+++.+. .|||+++|++|++++.|+++++.+.
T Consensus       496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~  568 (582)
T 3b60_A          496 LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQ  568 (582)
T ss_dssp             HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred             HhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEecCHHHHHHc
Confidence            999999999999999999999999999999877999999999999986 6999999999999999999877543

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=100.00  E-value=9.1e-54  Score=410.71  Aligned_cols=213  Identities=26%  Similarity=0.389  Sum_probs=184.7

Q ss_pred             CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. +...+|++|+|
T Consensus       340 i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~  419 (578)
T 4a82_A          340 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGL  419 (578)
T ss_dssp             EEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEE
T ss_pred             EEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEE
Confidence            478999999964 3579999999999999999999999999999999999999999999999999864 45567889999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCcCChhHHHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----------KRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      +||++.+|+. ||+||+.++..  ....    +++.++++..++.+           ..+++..+||||||||++|||||
T Consensus       420 v~Q~~~l~~~-tv~eni~~~~~--~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral  492 (578)
T 4a82_A          420 VQQDNILFSD-TVKENILLGRP--TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF  492 (578)
T ss_dssp             ECSSCCCCSS-BHHHHHGGGCS--SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred             EeCCCccCcc-cHHHHHhcCCC--CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHH
Confidence            9999999976 99999987532  1122    23455555555433           34455679999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      +.+|+++|||||||+||+.+++.+.+.++++.+++|+|++||+++.+.. |||+++|++|++++.|+++++...
T Consensus       493 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~el~~~  565 (578)
T 4a82_A          493 LNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIVETGTHRELIAK  565 (578)
T ss_dssp             HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEEEEECHHHHHHT
T ss_pred             HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence            9999999999999999999999999999998878999999999999865 999999999999999999877543

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=9.1e-54  Score=411.36  Aligned_cols=216  Identities=26%  Similarity=0.452  Sum_probs=185.4

Q ss_pred             CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. +...+|++|+|
T Consensus       342 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~  421 (587)
T 3qf4_A          342 VSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISA  421 (587)
T ss_dssp             EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEE
T ss_pred             EEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEE
Confidence            478999999953 3679999999999999999999999999999999999999999999999999864 45567889999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHH-----HHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGS  151 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p  151 (251)
                      +||++.+|+. ||+||+.++...  ...++..+.     +.+.++.+  |++...++++.+||||||||++|||||+.+|
T Consensus       422 v~Q~~~lf~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p  498 (587)
T 3qf4_A          422 VPQETVLFSG-TIKENLKWGRED--ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKP  498 (587)
T ss_dssp             ECSSCCCCSE-EHHHHHTTTCSS--CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCC
T ss_pred             ECCCCcCcCc-cHHHHHhccCCC--CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCC
Confidence            9999999975 999999875321  122221111     12223333  5556667889999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         152 RTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       152 ~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      ++||||||||+||+.+.+.+.+.++++.+|+|+|++||+++.+. .||||++|++|++++.|+++++.+
T Consensus       499 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~el~~  566 (587)
T 3qf4_A          499 KVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAGFGTHKELLE  566 (587)
T ss_dssp             SEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEECHHHHHH
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence            99999999999999999999999999877999999999999986 799999999999999999987754

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=5.4e-54  Score=413.78  Aligned_cols=213  Identities=26%  Similarity=0.381  Sum_probs=186.0

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      ++++|++++|++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. +...+|++|+|+
T Consensus       355 i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v  434 (598)
T 3qf4_B          355 IEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIV  434 (598)
T ss_dssp             EEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred             EEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEE
Confidence            4789999999655679999999999999999999999999999999999999999999999999864 455678899999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCC-----------CcCChhHHHHHHHHHHHc
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLA-----------NTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~kqrv~ia~al~  148 (251)
                      ||++.+|+ .||+||+.++..  ....    +++.++++.+++.+..++.|           .+||||||||++|||||+
T Consensus       435 ~Q~~~lf~-~tv~eni~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~  507 (598)
T 3qf4_B          435 LQDTILFS-TTVKENLKYGNP--GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL  507 (598)
T ss_dssp             CTTCCCCS-SBHHHHHHSSST--TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             eCCCcccc-ccHHHHHhcCCC--CCCH----HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence            99999987 499999987532  1122    23455666666655444443           799999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      .+|++||||||||+||+.+.+.+.+.++++.+|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus       508 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  579 (598)
T 3qf4_B          508 ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDELIQK  579 (598)
T ss_dssp             TCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEEECSCHHHHHHT
T ss_pred             cCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence            999999999999999999999999999998889999999999999875 999999999999999999887543

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=100.00  E-value=3.6e-52  Score=368.40  Aligned_cols=194  Identities=25%  Similarity=0.329  Sum_probs=155.8

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|+++.+   +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|            +|+|+|
T Consensus        41 l~~~~l~~~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------------~i~~v~  105 (290)
T 2bbs_A           41 LSFSNFSLLG---TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------RISFCS  105 (290)
T ss_dssp             ---------C---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS------------CEEEEC
T ss_pred             EEEEEEEEcC---ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC------------EEEEEe
Confidence            4678999864   4699999999999999999999999999999999999999999999987            389999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCcCChhHHHHHHHHHHHcc
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK-----------RTSLANTLSGGMQRKLSVAMAFIG  149 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~kqrv~ia~al~~  149 (251)
                      |++.+|+. ||+||+. +..   ...    ..+.++++.+++.+.           .++++.+|||||||||+|||||+.
T Consensus       106 Q~~~l~~~-tv~enl~-~~~---~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~  176 (290)
T 2bbs_A          106 QNSWIMPG-TIKENII-GVS---YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYK  176 (290)
T ss_dssp             SSCCCCSS-BHHHHHH-TTC---CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHS
T ss_pred             CCCccCcc-cHHHHhh-Ccc---cch----HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHC
Confidence            99998885 9999997 321   111    123344455555332           234568999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHH-HhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         150 GSRTVILDEPTSGVDPYSRRSIWELL-IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       150 ~p~llllDEPt~gLD~~~~~~l~~~l-~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +|++|||||||+|||+.++..+++.+ .++.+|+|||++|||++.+. .||++++|++|+++..|+++++.
T Consensus       177 ~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~g~~~~l~  246 (290)
T 2bbs_A          177 DADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQ  246 (290)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECHHHHH
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEEEeCCHHHHh
Confidence            99999999999999999999999974 55656899999999999986 59999999999999999987763

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=6.1e-50  Score=413.67  Aligned_cols=223  Identities=23%  Similarity=0.391  Sum_probs=188.6

Q ss_pred             CEEEeEEEEeCC--CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367           1 MAIQNLSKRFPN--GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~--~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~   77 (251)
                      |+++||+++|++  +.++|+|+||+|++||.+||+||||||||||+++|.|++.|++|+|.+||.|+.. +...+|++|+
T Consensus      1077 I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~ 1156 (1321)
T 4f4c_A         1077 VIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIA 1156 (1321)
T ss_dssp             EEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEE
T ss_pred             EEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheE
Confidence            578999999964  2469999999999999999999999999999999999999999999999999976 6678999999


Q ss_pred             EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCcCChhHHHHHHHHHH
Q psy7367          78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----------KRTSLANTLSGGMQRKLSVAMA  146 (251)
Q Consensus        78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrv~ia~a  146 (251)
                      ||||+|.+|+. |++|||.|+..-...+    .+++.++++..++.+           ........||||||||++||||
T Consensus      1157 ~V~Qdp~LF~g-TIreNI~~gld~~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARA 1231 (1321)
T 4f4c_A         1157 IVSQEPTLFDC-SIAENIIYGLDPSSVT----MAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARA 1231 (1321)
T ss_dssp             EECSSCCCCSE-EHHHHHSSSSCTTTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHH
T ss_pred             EECCCCEeeCc-cHHHHHhccCCCCCCC----HHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHH
Confidence            99999999986 9999998753222222    234666677666533           2333446799999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhcCcc
Q psy7367         147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGY  226 (251)
Q Consensus       147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~  226 (251)
                      |+++|++||||||||+||+++.+.+.+.|++..+++|+|+|+|.++.+.. ||||+||++|+|++.|+++++-+.  .+.
T Consensus      1232 llr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE~Gth~eLl~~--~g~ 1308 (1321)
T 4f4c_A         1232 LVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIEKGTHTQLMSE--KGA 1308 (1321)
T ss_dssp             HHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTT-CSEEEEESSSSEEEEECHHHHHHC--C--
T ss_pred             HHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC--CcH
Confidence            99999999999999999999999999999998889999999999999875 999999999999999999988764  345


Q ss_pred             eEEEe
Q psy7367         227 YLSLD  231 (251)
Q Consensus       227 ~~~~~  231 (251)
                      |..+.
T Consensus      1309 y~~L~ 1313 (1321)
T 4f4c_A         1309 YYKLT 1313 (1321)
T ss_dssp             -----
T ss_pred             HHHHH
Confidence            55544

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=1.5e-48  Score=402.47  Aligned_cols=216  Identities=26%  Similarity=0.407  Sum_probs=184.3

Q ss_pred             CEEEeEEEEeCCC--cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367           1 MAIQNLSKRFPNG--KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~~--~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~   77 (251)
                      ++++|++++|+++  .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+|++||
T Consensus       388 i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~  467 (1284)
T 3g5u_A          388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIG  467 (1284)
T ss_dssp             EEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred             EEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheE
Confidence            4789999999642  469999999999999999999999999999999999999999999999999864 4567788999


Q ss_pred             EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHH-----HHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccC
Q psy7367          78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGG  150 (251)
Q Consensus        78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~  150 (251)
                      ||||++.+|+. ||+||+.++..  ....++..+.     +.+.++.+  |++.....+..+||||||||++|||||+.+
T Consensus       468 ~v~Q~~~l~~~-ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~  544 (1284)
T 3g5u_A          468 VVSQEPVLFAT-TIAENIRYGRE--DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRN  544 (1284)
T ss_dssp             EECSSCCCCSS-CHHHHHHHHCS--SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHC
T ss_pred             EEcCCCccCCc-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcC
Confidence            99999999976 99999998642  1222222221     12233333  334445667789999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         151 SRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       151 p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      |++||||||||+||+.+.+.+.+.++++.+|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus       545 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~~~l~~  613 (1284)
T 3g5u_A          545 PKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDELMR  613 (1284)
T ss_dssp             CSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEECHHHHHH
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHh
Confidence            9999999999999999999999999888889999999999999976 99999999999999999887643

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=5.7e-49  Score=405.56  Aligned_cols=215  Identities=24%  Similarity=0.403  Sum_probs=183.8

Q ss_pred             CEEEeEEEEeCCC--cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367           1 MAIQNLSKRFPNG--KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~~--~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~   77 (251)
                      ++++|++++|+++  .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. +...+|++|+
T Consensus      1031 i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 1110 (1284)
T 3g5u_A         1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLG 1110 (1284)
T ss_dssp             EEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCE
T ss_pred             EEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceE
Confidence            4789999999642  369999999999999999999999999999999999999999999999999965 4567788999


Q ss_pred             EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCcCChhHHHHHHHHHH
Q psy7367          78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK-----------RTSLANTLSGGMQRKLSVAMA  146 (251)
Q Consensus        78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~kqrv~ia~a  146 (251)
                      ||||++.+|+ .||+||+.++........+    ++.++++..++.+.           ......+||||||||++||||
T Consensus      1111 ~v~Q~~~l~~-~ti~eNi~~~~~~~~~~~~----~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARa 1185 (1284)
T 3g5u_A         1111 IVSQEPILFD-CSIAENIAYGDNSRVVSYE----EIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARA 1185 (1284)
T ss_dssp             EEESSCCCCS-SBHHHHHTCCCSSCCCCHH----HHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHH
T ss_pred             EECCCCcccc-ccHHHHHhccCCCCCCCHH----HHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHH
Confidence            9999998886 5999999875432222332    23444454444332           333456899999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      |+.+|++|||||||++||+.+.+.+.+.|++..+|+|||++|||++.+.. ||||++|++|++++.|+++++.+.
T Consensus      1186 l~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~~~g~~~~l~~~ 1259 (1284)
T 3g5u_A         1186 LVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQQLLAQ 1259 (1284)
T ss_dssp             HHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS-CSEEEEEETBEEEEEECHHHHHHS
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence            99999999999999999999999999999988779999999999999865 999999999999999999887554

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=5.7e-48  Score=398.98  Aligned_cols=212  Identities=25%  Similarity=0.392  Sum_probs=185.4

Q ss_pred             CEEEeEEEEeCC--CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367           1 MAIQNLSKRFPN--GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~--~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~   77 (251)
                      |+++|++++|++  ++++|+|+||+|++|+.++|+||||||||||+++|.|+++|++|+|.++|.++.. +...+|++|+
T Consensus       416 I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~  495 (1321)
T 4f4c_A          416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVA  495 (1321)
T ss_dssp             EEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred             EEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhccc
Confidence            478999999963  3579999999999999999999999999999999999999999999999999975 5677899999


Q ss_pred             EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC-----------CCcccCCCCCcCChhHHHHHHHHHH
Q psy7367          78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG-----------IPHKRTSLANTLSGGMQRKLSVAMA  146 (251)
Q Consensus        78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~kqrv~ia~a  146 (251)
                      ||+|+|.+|+. |++|||.|+..  ....    +++.++++..+           ++.........||||||||++||||
T Consensus       496 ~v~Q~~~Lf~~-TI~eNI~~g~~--~~~~----~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARA  568 (1321)
T 4f4c_A          496 VVSQEPALFNC-TIEENISLGKE--GITR----EEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARA  568 (1321)
T ss_dssp             EECSSCCCCSE-EHHHHHHTTCT--TCCH----HHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHH
T ss_pred             ccCCcceeeCC-chhHHHhhhcc--cchH----HHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHH
Confidence            99999999976 99999998642  1222    23445555544           3344455667999999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      +.++|++||||||||+||+.+...+.+.|.++.+|+|+|++||++..+. .||+|++|++|+|++.|+.+++..
T Consensus       569 l~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~-~aD~Iivl~~G~ive~Gth~eL~~  641 (1321)
T 4f4c_A          569 LVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR-NADLIISCKNGQVVEVGDHRALMA  641 (1321)
T ss_dssp             HTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT-TCSEEEEEETTEEEEEECHHHHHT
T ss_pred             HccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH-hCCEEEEeeCCeeeccCCHHHHHH
Confidence            9999999999999999999999999999999988999999999999886 599999999999999999887643

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=3.8e-48  Score=372.93  Aligned_cols=201  Identities=20%  Similarity=0.270  Sum_probs=177.4

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|++++|++  ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+            ..+|+|+|
T Consensus       358 l~~~~l~~~~~~--~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~------------~~~i~~v~  423 (607)
T 3bk7_A          358 VEYPRLVKDYGS--FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW------------DLTVAYKP  423 (607)
T ss_dssp             EEECCEEEECSS--CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC------------CCCEEEEC
T ss_pred             EEEeceEEEecc--eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE------------eeEEEEEe
Confidence            468899999953  4799999999999999999999999999999999999999999976            24699999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+++.+||.|++.......    ....+.+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus       424 Q~~~~~~~~tv~e~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt  499 (607)
T 3bk7_A          424 QYIKAEYEGTVYELLSKIDSSK----LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPS  499 (607)
T ss_dssp             SSCCCCCSSBHHHHHHHHHHHH----HHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred             cCccCCCCCcHHHHHHhhhccC----CCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence            9998878899999887641110    011345788999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeC--CEEEeecCHHHHH
Q psy7367         161 SGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAA--GKLQCCGSSVFLK  219 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~--G~i~~~g~~~~~~  219 (251)
                      +|||+.++..++++|+++.  .|.|||++|||++++..+|||+++|++  |++...|+++.+.
T Consensus       500 ~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~  562 (607)
T 3bk7_A          500 AYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMR  562 (607)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHH
Confidence            9999999999999999984  599999999999999999999999986  7788889886543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=3.5e-48  Score=369.00  Aligned_cols=201  Identities=21%  Similarity=0.289  Sum_probs=176.7

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|+++.|++  ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+            ...|+|+|
T Consensus       288 l~~~~l~~~~~~--~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~------------~~~i~~v~  353 (538)
T 1yqt_A          288 VTYPRLVKDYGS--FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW------------DLTVAYKP  353 (538)
T ss_dssp             EEECCEEEEETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC------------CCCEEEEC
T ss_pred             EEEeeEEEEECC--EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE------------CceEEEEe
Confidence            468899999953  4799999999999999999999999999999999999999999975            23699999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++..++.+||.|++....... ..   ..+.+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus       354 Q~~~~~~~~tv~~~~~~~~~~~-~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt  429 (538)
T 1yqt_A          354 QYIKADYEGTVYELLSKIDASK-LN---SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPS  429 (538)
T ss_dssp             SSCCCCCSSBHHHHHHHHHHHH-HT---CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred             cCCcCCCCCcHHHHHHhhhccC-CC---HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence            9998778899999886541110 01   1245788999999998899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeC--CEEEeecCHHHHH
Q psy7367         161 SGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAA--GKLQCCGSSVFLK  219 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~--G~i~~~g~~~~~~  219 (251)
                      +|||+.++..++++|+++.  .|.|||++|||++++..+|||+++|++  |++...|+++++.
T Consensus       430 ~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~  492 (538)
T 1yqt_A          430 AYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMR  492 (538)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHH
Confidence            9999999999999999984  399999999999999999999999986  7888889886543

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=9.9e-48  Score=365.57  Aligned_cols=199  Identities=23%  Similarity=0.246  Sum_probs=172.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      ++++|+++.|++  ..|+.+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++           ..++|+|
T Consensus       270 l~~~~l~~~~~~--~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~-----------~~i~~~~  336 (538)
T 3ozx_A          270 MKWTKIIKKLGD--FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK-----------QILSYKP  336 (538)
T ss_dssp             EEECCEEEEETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC-----------CCEEEEC
T ss_pred             EEEcceEEEECC--EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-----------eeeEeec
Confidence            367899999953  568889999999999999999999999999999999999999998754           3589999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |+....+.+||.||+.+..... ...  ....++++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus       337 q~~~~~~~~tv~~~l~~~~~~~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT  413 (538)
T 3ozx_A          337 QRIFPNYDGTVQQYLENASKDA-LST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPS  413 (538)
T ss_dssp             SSCCCCCSSBHHHHHHHHCSST-TCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred             hhcccccCCCHHHHHHHhhhhc-cch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            9987666789999998742211 111  1235678899999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeC--CEEEeecCH
Q psy7367         161 SGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAA--GKLQCCGSS  215 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~--G~i~~~g~~  215 (251)
                      +|||+.++..++++|+++.  .|.|||+||||++++..+||||++|++  |.....+++
T Consensus       414 ~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~  472 (538)
T 3ozx_A          414 SYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSP  472 (538)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCCh
Confidence            9999999999999999984  489999999999999999999999986  455555554

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=7.1e-47  Score=359.95  Aligned_cols=194  Identities=21%  Similarity=0.285  Sum_probs=162.9

Q ss_pred             EeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEE---------EEcceeCCCCh-H--H
Q psy7367           4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA---------KIYNHDIRTDM-T--T   71 (251)
Q Consensus         4 ~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i---------~~~g~~~~~~~-~--~   71 (251)
                      +||+|+|++...+|+++| +|++||+++|+||||||||||+|+|+|+++|++|++         .++|.++.... .  .
T Consensus        25 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~  103 (538)
T 1yqt_A           25 EDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN  103 (538)
T ss_dssp             CCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHT
T ss_pred             cCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHH
Confidence            589999964225899999 999999999999999999999999999999999995         34555432111 1  1


Q ss_pred             hhcceEEEccCCCCCCC---CCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          72 IRRSLGVCPQYNALFDK---LTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        72 ~~~~i~~v~q~~~l~~~---ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      .+..+++++|...+++.   .|+.|++...    ..     .++++++++.+|+.+..++++.+|||||||||+||+||+
T Consensus       104 ~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~----~~-----~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~  174 (538)
T 1yqt_A          104 GEIRPVVKPQYVDLIPKAVKGKVIELLKKA----DE-----TGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALL  174 (538)
T ss_dssp             TSCCCEEECSCGGGSGGGCCSBHHHHHHHH----CS-----SSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred             HhhhhhhhhhhhhhcchhhhccHHHHHhhh----hH-----HHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHh
Confidence            12468899997644332   3898887531    11     134778999999999999999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCC
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAG  207 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G  207 (251)
                      .+|++|||||||++||+.+++.++++|++++ +|.|||+||||++++..+|||+++|++|
T Consensus       175 ~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~  234 (538)
T 1yqt_A          175 RNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE  234 (538)
T ss_dssp             SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred             cCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence            9999999999999999999999999999985 5999999999999999999999999864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=9e-47  Score=363.36  Aligned_cols=194  Identities=21%  Similarity=0.303  Sum_probs=163.5

Q ss_pred             EeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEE---------EEcceeCCCCh-H--H
Q psy7367           4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA---------KIYNHDIRTDM-T--T   71 (251)
Q Consensus         4 ~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i---------~~~g~~~~~~~-~--~   71 (251)
                      +|++++|++...+|+++| +|++||+++|+||||||||||||+|+|+++|++|++         .++|.++.... .  .
T Consensus        95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~  173 (607)
T 3bk7_A           95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN  173 (607)
T ss_dssp             GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHH
T ss_pred             CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhh
Confidence            799999964225899999 999999999999999999999999999999999996         34565442111 1  1


Q ss_pred             hhcceEEEccCCCCCC---CCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          72 IRRSLGVCPQYNALFD---KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        72 ~~~~i~~v~q~~~l~~---~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      .+..+++++|...+++   ..||.||+...    ..     .++++++++.+||.+..++++.+|||||||||+|||||+
T Consensus       174 ~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~----~~-----~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~  244 (607)
T 3bk7_A          174 GEIRPVVKPQYVDLLPKAVKGKVRELLKKV----DE-----VGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALL  244 (607)
T ss_dssp             TSCCCEEECSCGGGGGGTCCSBHHHHHHHT----CC-----SSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHH
T ss_pred             hhcceEEeechhhhchhhccccHHHHhhhh----HH-----HHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHh
Confidence            2346889998753322   23899998641    11     134778999999999999999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCC
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAG  207 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G  207 (251)
                      .+|++|||||||++||+.++..++++|+++. +|.|||+||||++++..+|||+++|+++
T Consensus       245 ~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~  304 (607)
T 3bk7_A          245 RKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE  304 (607)
T ss_dssp             SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred             cCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence            9999999999999999999999999999985 5999999999999999999999999864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-46  Score=358.13  Aligned_cols=199  Identities=21%  Similarity=0.255  Sum_probs=171.1

Q ss_pred             EeEEEEeCCCcceeeeeeEEEeCC-----cEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEE
Q psy7367           4 QNLSKRFPNGKLAVNGLNVNFYED-----QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGV   78 (251)
Q Consensus         4 ~~l~~~y~~~~~il~~isl~i~~G-----e~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~   78 (251)
                      ++++++|++...+++++||++.+|     |+++|+||||||||||+|+|+|+++|++|+.      +.      +..++|
T Consensus       350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~------~~~i~~  417 (608)
T 3j16_B          350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP------KLNVSM  417 (608)
T ss_dssp             SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC------SCCEEE
T ss_pred             cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc------CCcEEE
Confidence            456778864356899999999999     7899999999999999999999999999962      21      246999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE  158 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE  158 (251)
                      +||+.......||.|++....  .....  ....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||
T Consensus       418 ~~q~~~~~~~~tv~e~~~~~~--~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDE  493 (608)
T 3j16_B          418 KPQKIAPKFPGTVRQLFFKKI--RGQFL--NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDE  493 (608)
T ss_dssp             ECSSCCCCCCSBHHHHHHHHC--SSTTT--SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECC
T ss_pred             ecccccccCCccHHHHHHHHh--hcccc--cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            999987666679999875422  22111  12356788999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeC--CEEEeecCHHHH
Q psy7367         159 PTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAA--GKLQCCGSSVFL  218 (251)
Q Consensus       159 Pt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~--G~i~~~g~~~~~  218 (251)
                      ||+|||+.++..++++|+++.  .|.|||+||||++++..+|||+++|++  |+++..|+|+++
T Consensus       494 PT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~  557 (608)
T 3j16_B          494 PSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESL  557 (608)
T ss_dssp             TTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHH
Confidence            999999999999999999984  499999999999999999999999996  899999998654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=4e-45  Score=364.61  Aligned_cols=202  Identities=24%  Similarity=0.290  Sum_probs=162.6

Q ss_pred             CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v   79 (251)
                      |+++|++++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.          .+|+|+
T Consensus       672 L~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~----------~~I~yv  741 (986)
T 2iw3_A          672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN----------CRIAYI  741 (986)
T ss_dssp             EEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT----------CCEEEE
T ss_pred             EEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc----------cceEee
Confidence            478999999964 257999999999999999999999999999999999999999999999752          136666


Q ss_pred             ccCCCC----CCCCCHHHHHHHHHHh------------------------------------------------------
Q psy7367          80 PQYNAL----FDKLTVEEHMWFYSQL------------------------------------------------------  101 (251)
Q Consensus        80 ~q~~~l----~~~ltv~e~l~~~~~~------------------------------------------------------  101 (251)
                      +|++..    ....|+.+++.+....                                                      
T Consensus       742 ~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~  821 (986)
T 2iw3_A          742 KQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSF  821 (986)
T ss_dssp             CHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             ccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhh
Confidence            665421    1223555554331100                                                      


Q ss_pred             -----------------------------------------------cCCChHHHHHHHHHHHHHcCCCc-c-cCCCCCc
Q psy7367         102 -----------------------------------------------KQVPKDLAQLEISNMIVDLGIPH-K-RTSLANT  132 (251)
Q Consensus       102 -----------------------------------------------~~~~~~~~~~~~~~~l~~~~l~~-~-~~~~~~~  132 (251)
                                                                     .+.......++++++++.+||.. . .++++.+
T Consensus       822 sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~  901 (986)
T 2iw3_A          822 LLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRG  901 (986)
T ss_dssp             EEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGG
T ss_pred             hhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccc
Confidence                                                           00000011346788999999985 3 5889999


Q ss_pred             CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEee
Q psy7367         133 LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  212 (251)
Q Consensus       133 LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~  212 (251)
                      |||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++  +.|||++|||++++..+||++++|++|+++..
T Consensus       902 LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~  979 (986)
T 2iw3_A          902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDGRMTPS  979 (986)
T ss_dssp             CCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCBTTBCCC-
T ss_pred             cCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999999999999999999999999999876  57999999999999999999999999999877


Q ss_pred             cC
Q psy7367         213 GS  214 (251)
Q Consensus       213 g~  214 (251)
                      |+
T Consensus       980 G~  981 (986)
T 2iw3_A          980 GH  981 (986)
T ss_dssp             --
T ss_pred             CC
Confidence            64

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=4e-44  Score=357.44  Aligned_cols=195  Identities=19%  Similarity=0.201  Sum_probs=168.6

Q ss_pred             EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEcc
Q psy7367           2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQ   81 (251)
Q Consensus         2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q   81 (251)
                      ...|++++|+ ++.+|+++||+|++|++++|+||||||||||||+|+|      |+|  +|.+...     ..+++|++|
T Consensus       437 ~~~~ls~~yg-~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~-----~~~~~~v~q  502 (986)
T 2iw3_A          437 CNCEFSLAYG-AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE-----ECRTVYVEH  502 (986)
T ss_dssp             EEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT-----TSCEEETTC
T ss_pred             EEeeEEEEEC-CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc-----ceeEEEEcc
Confidence            4568999996 4789999999999999999999999999999999995      443  4443311     124789999


Q ss_pred             CC-CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy7367          82 YN-ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP  159 (251)
Q Consensus        82 ~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEP  159 (251)
                      ++ .+++.+||.||+.+  ...+.     .+++.++++.+|+. +..++++.+||||||||++|||||+.+|++||||||
T Consensus       503 ~~~~~~~~ltv~e~l~~--~~~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEP  575 (986)
T 2iw3_A          503 DIDGTHSDTSVLDFVFE--SGVGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEP  575 (986)
T ss_dssp             CCCCCCTTSBHHHHHHT--TCSSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEEST
T ss_pred             cccccccCCcHHHHHHH--hhcCH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence            85 67888999999976  22221     45688999999995 678999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEE-eecCHHHHH
Q psy7367         160 TSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ-CCGSSVFLK  219 (251)
Q Consensus       160 t~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  219 (251)
                      |++||+.+++.++++|++  .|.|||++|||++++..+||++++|++|+++ +.|+++++.
T Consensus       576 Ts~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~  634 (986)
T 2iw3_A          576 TNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFV  634 (986)
T ss_dssp             TTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence            999999999999999998  6899999999999999999999999999997 689887653

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=6e-45  Score=354.83  Aligned_cols=203  Identities=19%  Similarity=0.283  Sum_probs=141.8

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHH---------------------HHHhCCCCCC-------eeEEEEccee
Q psy7367          13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTI---------------------SMLMGMLPVS-------SGTAKIYNHD   64 (251)
Q Consensus        13 ~~~il~~isl~i~~Ge~~~liG~NGaGKSTLl---------------------k~l~Gl~~p~-------~G~i~~~g~~   64 (251)
                      .+.+|+||||+|++||++||+||||||||||+                     ++++|+.+|+       .|.|.++|.+
T Consensus        30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~  109 (670)
T 3ux8_A           30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT  109 (670)
T ss_dssp             CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred             CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence            35799999999999999999999999999998                     9999999998       4556666654


Q ss_pred             CCCChHHhhcceEEEccCCC-------------------CCCCCCHHHHHHHHHHhcC--CChHHHH------HHHHHHH
Q psy7367          65 IRTDMTTIRRSLGVCPQYNA-------------------LFDKLTVEEHMWFYSQLKQ--VPKDLAQ------LEISNMI  117 (251)
Q Consensus        65 ~~~~~~~~~~~i~~v~q~~~-------------------l~~~ltv~e~l~~~~~~~~--~~~~~~~------~~~~~~l  117 (251)
                      ...   ..++.+++++|.+.                   .++.+||+||+.++.....  .......      ....+++
T Consensus       110 ~~~---~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  186 (670)
T 3ux8_A          110 TSR---NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFL  186 (670)
T ss_dssp             --------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHH
T ss_pred             hhc---cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHH
Confidence            422   11334555555332                   3467899999987533211  0000000      1122458


Q ss_pred             HHcCCCcc-cCCCCCcCChhHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHH
Q psy7367         118 VDLGIPHK-RTSLANTLSGGMQRKLSVAMAFIGGSR--TVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDE  193 (251)
Q Consensus       118 ~~~~l~~~-~~~~~~~LSgG~kqrv~ia~al~~~p~--llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~  193 (251)
                      +.+||.+. .++++.+|||||||||+|||||+.+|+  +|||||||+|||+.++..++++|++++ +|.|||+||||++.
T Consensus       187 ~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~  266 (670)
T 3ux8_A          187 QNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT  266 (670)
T ss_dssp             HHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred             HHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            89999865 689999999999999999999999998  999999999999999999999999985 59999999999998


Q ss_pred             HHhhcCEEEEe------eCCEEEeecCHHHHH
Q psy7367         194 ADLLGDRIAII------AAGKLQCCGSSVFLK  219 (251)
Q Consensus       194 ~~~~~d~i~~l------~~G~i~~~g~~~~~~  219 (251)
                      +. .|||+++|      ++|++++.|+++++.
T Consensus       267 ~~-~~d~ii~l~~g~~~~~G~i~~~g~~~~~~  297 (670)
T 3ux8_A          267 ML-AADYLIDIGPGAGIHGGEVVAAGTPEEVM  297 (670)
T ss_dssp             HH-HCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred             Hh-hCCEEEEecccccccCCEEEEecCHHHHh
Confidence            76 59999999      899999999987664

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-43  Score=336.64  Aligned_cols=196  Identities=19%  Similarity=0.278  Sum_probs=154.3

Q ss_pred             eEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEE-----------EcceeCCCC-hHHh
Q psy7367           5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK-----------IYNHDIRTD-MTTI   72 (251)
Q Consensus         5 ~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~-----------~~g~~~~~~-~~~~   72 (251)
                      |++++|+.+...|++++ ++++||++||+||||||||||||+|+|+++|++|+|.           +.|.++... ....
T Consensus        82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~  160 (608)
T 3j16_B           82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML  160 (608)
T ss_dssp             TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred             CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence            68999975556788877 6999999999999999999999999999999999982           333322110 0111


Q ss_pred             hcce--EEEccCCCC------CCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHH
Q psy7367          73 RRSL--GVCPQYNAL------FDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVA  144 (251)
Q Consensus        73 ~~~i--~~v~q~~~l------~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia  144 (251)
                      ...+  .+.+|....      .+..++.+++...   ..    ...++++++++.+++.+..++++.+|||||||||+||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~---~~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iA  233 (608)
T 3j16_B          161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR---ME----KSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIG  233 (608)
T ss_dssp             HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH---CC----SCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHH
T ss_pred             HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh---hh----hHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHH
Confidence            2222  233443211      1123555555431   11    1124688999999999999999999999999999999


Q ss_pred             HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCE
Q psy7367         145 MAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGK  208 (251)
Q Consensus       145 ~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~  208 (251)
                      +||+.+|++|||||||++||+.++..++++|++++ +|.|||+||||++++..+|||+++|++|.
T Consensus       234 raL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~  298 (608)
T 3j16_B          234 MSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP  298 (608)
T ss_dssp             HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred             HHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence            99999999999999999999999999999999996 49999999999999999999999998764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=1.4e-42  Score=330.16  Aligned_cols=192  Identities=23%  Similarity=0.277  Sum_probs=155.2

Q ss_pred             EeEEEEeCCCcceeeeeeEEEe-CCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEE-----------EEcceeCCCChHH
Q psy7367           4 QNLSKRFPNGKLAVNGLNVNFY-EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA-----------KIYNHDIRTDMTT   71 (251)
Q Consensus         4 ~~l~~~y~~~~~il~~isl~i~-~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i-----------~~~g~~~~~~~~~   71 (251)
                      ++.+.+|+.+  -++-..|.+. +||++||+||||||||||+|+|+|+++|++|+|           .++|+++......
T Consensus         3 ~~~~~~~~~~--~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~   80 (538)
T 3ozx_A            3 GEVIHRYKVN--GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE   80 (538)
T ss_dssp             CCEEEESSTT--SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHH
T ss_pred             CCCceecCCC--ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHH
Confidence            4678999643  4566666554 899999999999999999999999999999998           5677665321111


Q ss_pred             -h--hcceEEEccC----CCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHH
Q psy7367          72 -I--RRSLGVCPQY----NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVA  144 (251)
Q Consensus        72 -~--~~~i~~v~q~----~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia  144 (251)
                       .  ...+...+|.    +.++. .++.+++...    .     ..++++++++.+++....++++.+|||||||||+||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~l~~~----~-----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA  150 (538)
T 3ozx_A           81 LYSNELKIVHKIQYVEYASKFLK-GTVNEILTKI----D-----ERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVA  150 (538)
T ss_dssp             HHTTCCCEEEECSCTTGGGTTCC-SBHHHHHHHH----C-----CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHH
T ss_pred             Hhhcccchhhccchhhhhhhhcc-CcHHHHhhcc----h-----hHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence             1  1234444444    33333 4788765421    1     112467889999999999999999999999999999


Q ss_pred             HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCC
Q psy7367         145 MAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAG  207 (251)
Q Consensus       145 ~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G  207 (251)
                      |||+.+|++|||||||++||+.++..++++|+++++|.|||+||||++++..+||+|++|++|
T Consensus       151 ~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~  213 (538)
T 3ozx_A          151 ASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGE  213 (538)
T ss_dssp             HHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred             HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCC
Confidence            999999999999999999999999999999999976999999999999999999999999865

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=2e-41  Score=330.07  Aligned_cols=199  Identities=22%  Similarity=0.322  Sum_probs=155.1

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh----------------------CCCCCCeeEEEEcceeCCCChH-
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLM----------------------GMLPVSSGTAKIYNHDIRTDMT-   70 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~----------------------Gl~~p~~G~i~~~g~~~~~~~~-   70 (251)
                      ..+|+||||+|++||+++|+||||||||||+++|+                      |+..+ +|.|.+++.++..... 
T Consensus       335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~  413 (670)
T 3ux8_A          335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRS  413 (670)
T ss_dssp             STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTC
T ss_pred             ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCc
Confidence            46899999999999999999999999999998754                      44444 4688888887642110 


Q ss_pred             ---Hh--------------------------------------hcceEEEccCCCCCC----------------------
Q psy7367          71 ---TI--------------------------------------RRSLGVCPQYNALFD----------------------   87 (251)
Q Consensus        71 ---~~--------------------------------------~~~i~~v~q~~~l~~----------------------   87 (251)
                         ..                                      ....|+++|+..+++                      
T Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (670)
T 3ux8_A          414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT  493 (670)
T ss_dssp             CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred             chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence               00                                      011234444333222                      


Q ss_pred             ----------CCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccCC---CE
Q psy7367          88 ----------KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGGS---RT  153 (251)
Q Consensus        88 ----------~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~p---~l  153 (251)
                                .+||.||+.++...    .  ..++..++++.+++.. ..++++.+|||||||||+|||||+.+|   ++
T Consensus       494 ~~~~~~~~~~~ltv~e~l~~~~~~----~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~l  567 (670)
T 3ux8_A          494 YKGKNIAEVLDMTVEDALDFFASI----P--KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTL  567 (670)
T ss_dssp             BTTBCHHHHHTSBHHHHHHHTTTC----H--HHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEE
T ss_pred             ecCCCHHHHhhCCHHHHHHHHHHh----h--hHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcE
Confidence                      47999999875421    1  1235667888999974 568899999999999999999999887   59


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe------eCCEEEeecCHHHHHh
Q psy7367         154 VILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVFLKN  220 (251)
Q Consensus       154 lllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l------~~G~i~~~g~~~~~~~  220 (251)
                      |||||||+|||+.++..++++|++++ +|.|||+||||++.+. .||||++|      ++|++++.|+++++.+
T Consensus       568 lllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~  640 (670)
T 3ux8_A          568 YILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAVGTPEEVAE  640 (670)
T ss_dssp             EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEEESSSGGGCCEEEEEECHHHHHT
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEecCHHHHHh
Confidence            99999999999999999999999985 5999999999999885 69999999      8999999999988754

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=100.00  E-value=4.5e-39  Score=318.05  Aligned_cols=207  Identities=23%  Similarity=0.361  Sum_probs=158.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHH-HhCCC-------CC------------------C
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISM-LMGML-------PV------------------S   54 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~-l~Gl~-------~p------------------~   54 (251)
                      |+++|+++      .+|+||||+|++||+++|+|+||||||||+++ |+|++       +|                  .
T Consensus       503 L~v~~l~~------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~  576 (842)
T 2vf7_A          503 LELNGVTR------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARL  576 (842)
T ss_dssp             EEEEEEEE------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEE
T ss_pred             EEEEeeee------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccc
Confidence            45677764      25999999999999999999999999999996 76543       23                  4


Q ss_pred             ee-------EEEEcceeCCCCh-----------HHhh---------cceEEEccC----------------------CCC
Q psy7367          55 SG-------TAKIYNHDIRTDM-----------TTIR---------RSLGVCPQY----------------------NAL   85 (251)
Q Consensus        55 ~G-------~i~~~g~~~~~~~-----------~~~~---------~~i~~v~q~----------------------~~l   85 (251)
                      +|       .|.+++.++....           ..+|         +.+||.++.                      ..+
T Consensus       577 ~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f  656 (842)
T 2vf7_A          577 GGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLF  656 (842)
T ss_dssp             EESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCS
T ss_pred             cCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhc
Confidence            67       6888988774211           1111         112332221                      111


Q ss_pred             C------------------------CCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCc
Q psy7367          86 F------------------------DKLT--------VEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANT  132 (251)
Q Consensus        86 ~------------------------~~lt--------v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~  132 (251)
                      +                        ...+        +.|++.|+.   . ..  ..+++.++++.++|.. ..++++.+
T Consensus       657 ~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~---~-~~--~~~~~~~~L~~~gL~~~~l~~~~~~  730 (842)
T 2vf7_A          657 LPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFA---D-ES--AIFRALDTLREVGLGYLRLGQPATE  730 (842)
T ss_dssp             SSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT---T-SH--HHHHHHHHHHHTTCTTSBTTCCGGG
T ss_pred             CCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhh---c-ch--HHHHHHHHHHHcCCCcccccCCccc
Confidence            1                        1234        444444321   1 11  2246789999999987 46899999


Q ss_pred             CChhHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe----
Q psy7367         133 LSGGMQRKLSVAMAFIGG---SRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII----  204 (251)
Q Consensus       133 LSgG~kqrv~ia~al~~~---p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l----  204 (251)
                      |||||||||+||++|+.+   |++|||||||+|||+..++.++++|+++. +|.|||++|||++++ ..||||++|    
T Consensus       731 LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L~p~~  809 (842)
T 2vf7_A          731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLDIGPGA  809 (842)
T ss_dssp             CCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSS
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCC
Confidence            999999999999999996   79999999999999999999999999985 699999999999999 689999999    


Q ss_pred             --eCCEEEeecCHHHHHh
Q psy7367         205 --AAGKLQCCGSSVFLKN  220 (251)
Q Consensus       205 --~~G~i~~~g~~~~~~~  220 (251)
                        ++|++++.|+++++..
T Consensus       810 g~~~G~Iv~~g~~~el~~  827 (842)
T 2vf7_A          810 GEDGGRLVAQGTPAEVAQ  827 (842)
T ss_dssp             GGGCCSEEEEECHHHHTT
T ss_pred             CCCCCEEEEEcCHHHHHh
Confidence              7999999999987643

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=100.00  E-value=1.1e-38  Score=316.55  Aligned_cols=199  Identities=22%  Similarity=0.319  Sum_probs=157.8

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh-CCC-------CCCee-------------EEEEcceeCCCC----h
Q psy7367          15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLM-GML-------PVSSG-------------TAKIYNHDIRTD----M   69 (251)
Q Consensus        15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~-Gl~-------~p~~G-------------~i~~~g~~~~~~----~   69 (251)
                      .+|+||||+|++||++||+|+||||||||+++|+ |.+       .+..|             .|.+++.++...    .
T Consensus       638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~p  717 (972)
T 2r6f_A          638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNP  717 (972)
T ss_dssp             SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCH
T ss_pred             cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccc
Confidence            3699999999999999999999999999999853 221       12233             478888776421    1


Q ss_pred             H-------Hh---------hcceEEEccCCCCCC----------------------------------------------
Q psy7367          70 T-------TI---------RRSLGVCPQYNALFD----------------------------------------------   87 (251)
Q Consensus        70 ~-------~~---------~~~i~~v~q~~~l~~----------------------------------------------   87 (251)
                      .       .+         .+.+||++|.+.+.+                                              
T Consensus       718 aty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~  797 (972)
T 2r6f_A          718 ATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK  797 (972)
T ss_dssp             HHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBT
T ss_pred             hhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhcc
Confidence            0       01         134688887543310                                              


Q ss_pred             --------CCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccCC---CEEE
Q psy7367          88 --------KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGGS---RTVI  155 (251)
Q Consensus        88 --------~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~p---~lll  155 (251)
                              .+|+.|++.|+...    ..  ..++.++++.++|.. ..++++.+|||||||||+||++|+.+|   ++||
T Consensus       798 g~sI~dvl~ltv~e~l~~~~~~----~~--~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLI  871 (972)
T 2r6f_A          798 GKNIAEVLDMTVEDALDFFASI----PK--IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYI  871 (972)
T ss_dssp             TBCHHHHHTSBHHHHHHHTCSC----HH--HHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEE
T ss_pred             CCCHHHhhhcCHHHHHHHHhcc----hh--HHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEE
Confidence                    35777887764321    11  234568999999987 789999999999999999999999875   9999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe------eCCEEEeecCHHHHHh
Q psy7367         156 LDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVFLKN  220 (251)
Q Consensus       156 lDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l------~~G~i~~~g~~~~~~~  220 (251)
                      |||||+|||+.++..++++|+++. +|.|||++|||++++. .|||+++|      ++|++++.|+++++..
T Consensus       872 LDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~aDrIivL~p~gG~~~G~Iv~~g~~~el~~  942 (972)
T 2r6f_A          872 LDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAVGTPEEVAE  942 (972)
T ss_dssp             EECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEECSSSTTSCCSEEEEESHHHHHT
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hCCEEEEEcCCCCCCCCEEEEecCHHHHHh
Confidence            999999999999999999999985 6999999999999984 79999999      7899999999987754

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=3.2e-37  Score=307.06  Aligned_cols=200  Identities=22%  Similarity=0.309  Sum_probs=157.6

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHH---------HHHhCCCCCC------ee------EEEEcceeCCCC----
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTI---------SMLMGMLPVS------SG------TAKIYNHDIRTD----   68 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLl---------k~l~Gl~~p~------~G------~i~~~g~~~~~~----   68 (251)
                      ...|+||||+|++|++++|+||||||||||+         +++.+...+.      +|      .+.++..++...    
T Consensus       597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~  676 (916)
T 3pih_A          597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN  676 (916)
T ss_dssp             STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred             cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence            4579999999999999999999999999997         4555544333      23      244444443210    


Q ss_pred             hH-------H-------------------------------hhcceEEEccCCCCCC-----------------------
Q psy7367          69 MT-------T-------------------------------IRRSLGVCPQYNALFD-----------------------   87 (251)
Q Consensus        69 ~~-------~-------------------------------~~~~i~~v~q~~~l~~-----------------------   87 (251)
                      ..       .                               ..+..|+++++..+++                       
T Consensus       677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~  756 (916)
T 3pih_A          677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY  756 (916)
T ss_dssp             HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred             ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence            00       0                               0124577777766554                       


Q ss_pred             ---------CCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccCC---CEE
Q psy7367          88 ---------KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGGS---RTV  154 (251)
Q Consensus        88 ---------~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~p---~ll  154 (251)
                               .+||.|++.|+...      ....++.++|+.+||.. ..++++.+|||||||||+|||||+.+|   ++|
T Consensus       757 ~g~~i~~vl~~tv~eal~f~~~~------~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LL  830 (916)
T 3pih_A          757 KGKNISDILDMTVDEALEFFKNI------PSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLY  830 (916)
T ss_dssp             TTBCHHHHHSSBHHHHHHHTTTC------HHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEE
T ss_pred             ccCCHHHHhhCCHHHHHHHHhcc------hhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEE
Confidence                     36788888775321      12345778999999975 458899999999999999999999875   799


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe------eCCEEEeecCHHHHHh
Q psy7367         155 ILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVFLKN  220 (251)
Q Consensus       155 llDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l------~~G~i~~~g~~~~~~~  220 (251)
                      ||||||+|||+.+++.++++|.++. +|.|||+||||++++.. ||+|++|      ++|+|++.|+++++..
T Consensus       831 ILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~Gtpeel~~  902 (916)
T 3pih_A          831 ILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVATGTPEEIAK  902 (916)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence            9999999999999999999999985 69999999999999865 9999999      8999999999988754

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-42  Score=323.80  Aligned_cols=182  Identities=14%  Similarity=0.144  Sum_probs=153.9

Q ss_pred             eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCee-E-EEEcceeCCCChHHhhcceEEEccCCC---CCCCCCHHH
Q psy7367          19 GLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG-T-AKIYNHDIRTDMTTIRRSLGVCPQYNA---LFDKLTVEE   93 (251)
Q Consensus        19 ~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G-~-i~~~g~~~~~~~~~~~~~i~~v~q~~~---l~~~ltv~e   93 (251)
                      ++||++++|++++|+||||||||||+|+|+|+++|++| + |+++|.        .++.++|+||+..   +++.+|++|
T Consensus       130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~--------~~~~i~~vpq~~~l~~~~~~~tv~e  201 (460)
T 2npi_A          130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD--------PQQPIFTVPGCISATPISDILDAQL  201 (460)
T ss_dssp             HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC--------TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred             cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC--------ccCCeeeeccchhhcccccccchhh
Confidence            79999999999999999999999999999999999999 9 999982        2567999999984   345679999


Q ss_pred             HHHHHHHh-cCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHH--HccCCCE----EEEeC-CCCCCCH
Q psy7367          94 HMWFYSQL-KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMA--FIGGSRT----VILDE-PTSGVDP  165 (251)
Q Consensus        94 ~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~a--l~~~p~l----lllDE-Pt~gLD~  165 (251)
                      |+ |+... .+...   .+++.++++.+|+.+..+  +.+|||||||||+||||  |+.+|++    ||||| ||++||+
T Consensus       202 ni-~~~~~~~~~~~---~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~  275 (460)
T 2npi_A          202 PT-WGQSLTSGATL---LHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDE  275 (460)
T ss_dssp             TT-CSCBCBSSCCS---SCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCS
T ss_pred             hh-cccccccCcch---HHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccCh
Confidence            98 64432 12111   124566788899987765  88999999999999999  9999999    99999 9999999


Q ss_pred             HHHHHHHHHHHhhhCCCeEEEEeCCHH------HHHhhcCE-----EEEee-CCEEEeecCHHHH
Q psy7367         166 YSRRSIWELLIKYKKGRTVILTTHYMD------EADLLGDR-----IAIIA-AGKLQCCGSSVFL  218 (251)
Q Consensus       166 ~~~~~l~~~l~~l~~g~tiii~tHd~~------~~~~~~d~-----i~~l~-~G~i~~~g~~~~~  218 (251)
                      . ++.+.++++++  +.|+|++|||.+      ++..+|||     +++|+ +|+++ .|+++.+
T Consensus       276 ~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~  336 (460)
T 2npi_A          276 N-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK  336 (460)
T ss_dssp             S-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred             h-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence            9 66666666654  688999999987      88899999     99999 99999 8988655

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=100.00  E-value=1.5e-36  Score=279.05  Aligned_cols=196  Identities=18%  Similarity=0.254  Sum_probs=149.1

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--------------------------------------CCe
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP--------------------------------------VSS   55 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~--------------------------------------p~~   55 (251)
                      ..++++++|+|++| +++|+|||||||||||++|+++..                                      +.+
T Consensus        48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~  126 (415)
T 4aby_A           48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR  126 (415)
T ss_dssp             ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred             ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence            45799999999999 999999999999999999977764                                      457


Q ss_pred             eEEEEcceeCCC-ChHHhh-cceEEEccCCCCCCCCCHHHHHHHHHHhcC----------------------CC------
Q psy7367          56 GTAKIYNHDIRT-DMTTIR-RSLGVCPQYNALFDKLTVEEHMWFYSQLKQ----------------------VP------  105 (251)
Q Consensus        56 G~i~~~g~~~~~-~~~~~~-~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~----------------------~~------  105 (251)
                      |+++++|+++.. ....+. ..+++++|+..++.. +..+...|.-....                      ..      
T Consensus       127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~  205 (415)
T 4aby_A          127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK  205 (415)
T ss_dssp             EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            899999999863 223333 348999999876543 55544433211100                      00      


Q ss_pred             --------------------------------hHHHHHHHHHHHHHcCCCcc-----------------------cC---
Q psy7367         106 --------------------------------KDLAQLEISNMIVDLGIPHK-----------------------RT---  127 (251)
Q Consensus       106 --------------------------------~~~~~~~~~~~l~~~~l~~~-----------------------~~---  127 (251)
                                                      .......+.+.++.+++...                       ..   
T Consensus       206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  285 (415)
T 4aby_A          206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP  285 (415)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred             cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence                                            00112334555666665430                       11   


Q ss_pred             ----CCCCc-CChhHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCE
Q psy7367         128 ----SLANT-LSGGMQRKLSVAMAFIGGS--RTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDR  200 (251)
Q Consensus       128 ----~~~~~-LSgG~kqrv~ia~al~~~p--~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~  200 (251)
                          +++.. ||||||||++||++|+.+|  ++|||||||+|||+..+..+.++|+++.+|.|||+|||+++.+ .+||+
T Consensus       286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~  364 (415)
T 4aby_A          286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHH  364 (415)
T ss_dssp             SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSE
T ss_pred             CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCe
Confidence                22333 6999999999999999999  9999999999999999999999999998899999999999776 57999


Q ss_pred             EEEe----eCCEEEee
Q psy7367         201 IAII----AAGKLQCC  212 (251)
Q Consensus       201 i~~l----~~G~i~~~  212 (251)
                      +++|    ++|+++..
T Consensus       365 i~~l~k~~~~G~~~~~  380 (415)
T 4aby_A          365 HYKVEKQVEDGRTVSH  380 (415)
T ss_dssp             EEEEEEEEETTEEEEE
T ss_pred             EEEEEEeccCCceEEE
Confidence            9999    99998754

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=100.00  E-value=3e-33  Score=254.58  Aligned_cols=84  Identities=24%  Similarity=0.294  Sum_probs=78.3

Q ss_pred             CCCCCcCChhHHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcC
Q psy7367         127 TSLANTLSGGMQRKLSVAMAFI------GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGD  199 (251)
Q Consensus       127 ~~~~~~LSgG~kqrv~ia~al~------~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d  199 (251)
                      ++++.+|||||||||+||+||+      .+|++|||||||++||+..+..++++|++++ .|.|||+||||++. ...||
T Consensus       274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d  352 (365)
T 3qf7_A          274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFD  352 (365)
T ss_dssp             EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCS
T ss_pred             CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCC
Confidence            5688999999999999999999      7999999999999999999999999999985 59999999999998 56799


Q ss_pred             EEEEeeCCEEEe
Q psy7367         200 RIAIIAAGKLQC  211 (251)
Q Consensus       200 ~i~~l~~G~i~~  211 (251)
                      ++++|++|+++.
T Consensus       353 ~~~~l~~G~i~~  364 (365)
T 3qf7_A          353 RKLRITGGVVVN  364 (365)
T ss_dssp             CEEEEETTEEC-
T ss_pred             EEEEEECCEEEe
Confidence            999999999874

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=100.00  E-value=1.7e-37  Score=262.07  Aligned_cols=159  Identities=19%  Similarity=0.174  Sum_probs=108.3

Q ss_pred             EEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCC
Q psy7367           8 KRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD   87 (251)
Q Consensus         8 ~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~   87 (251)
                      |+|+ ++.+|+++    ++||+++|+||||||||||+|+|+|+ +|++|+|..  .++.......++.+||+||++    
T Consensus         8 k~~g-~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~----   75 (208)
T 3b85_A            8 KTLG-QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTRPAVEAGEKLGFLPGTL----   75 (208)
T ss_dssp             CSHH-HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEECSCCTTCCCCSSCC------
T ss_pred             CCHh-HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecCCchhhhcceEEecCCH----
Confidence            3453 36789996    89999999999999999999999999 999999953  222211123467899999986    


Q ss_pred             CCCHHHHH-HHH----HHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCC
Q psy7367          88 KLTVEEHM-WFY----SQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSG  162 (251)
Q Consensus        88 ~ltv~e~l-~~~----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~g  162 (251)
                          +||+ .+.    ..+.....   .++++++++. ++             ||||||+|||||+.+|++|||||||++
T Consensus        76 ----~enl~~~~~~~~~~~~~~~~---~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~  134 (208)
T 3b85_A           76 ----NEKIDPYLRPLHDALRDMVE---PEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT  134 (208)
T ss_dssp             --------CTTTHHHHHHHTTTSC---TTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC
T ss_pred             ----HHHHHHHHHHHHHHHHHhcc---HHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc
Confidence                3444 221    11111111   1345666665 44             999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCE
Q psy7367         163 VDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGK  208 (251)
Q Consensus       163 LD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~  208 (251)
                          ++..++++|+++.+|+||| +|||++++..    ...+++|.
T Consensus       135 ----~~~~l~~~l~~l~~g~tii-vtHd~~~~~~----~~~~~~G~  171 (208)
T 3b85_A          135 ----TPAQMKMFLTRLGFGSKMV-VTGDITQVDL----PGGQKSGL  171 (208)
T ss_dssp             ----CHHHHHHHHTTBCTTCEEE-EEEC----------------CC
T ss_pred             ----cHHHHHHHHHHhcCCCEEE-EECCHHHHhC----cCCCCCcH
Confidence                8999999999884589999 9999987653    33345664

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=1.8e-32  Score=245.20  Aligned_cols=190  Identities=20%  Similarity=0.257  Sum_probs=128.1

Q ss_pred             eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC----------------------------------------------
Q psy7367          18 NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML----------------------------------------------   51 (251)
Q Consensus        18 ~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~----------------------------------------------   51 (251)
                      +++++++.+| +++|+||||||||||+++|..++                                              
T Consensus        16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~   94 (322)
T 1e69_A           16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA   94 (322)
T ss_dssp             SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred             CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence            5678999999 99999999999999999999543                                              


Q ss_pred             ----CCCeeEEEEcceeCCC-ChHHhhcceEEEccCCCCCCCCCHHHHHHHHHH------------hcC-CChHH-----
Q psy7367          52 ----PVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ------------LKQ-VPKDL-----  108 (251)
Q Consensus        52 ----~p~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~------------~~~-~~~~~-----  108 (251)
                          ++.+|.++++|+++.. ........+++.||+..+++.-++.+++.....            ... ...+.     
T Consensus        95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~  174 (322)
T 1e69_A           95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF  174 (322)
T ss_dssp             EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred             EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                2345788899987642 122334456665555443322222222211000            000 00000     


Q ss_pred             ----------------HHHHHHHHHHH-cCC----CcccCCCCCcCChhHHHHHHHHHHHc----cCCCEEEEeCCCCCC
Q psy7367         109 ----------------AQLEISNMIVD-LGI----PHKRTSLANTLSGGMQRKLSVAMAFI----GGSRTVILDEPTSGV  163 (251)
Q Consensus       109 ----------------~~~~~~~~l~~-~~l----~~~~~~~~~~LSgG~kqrv~ia~al~----~~p~llllDEPt~gL  163 (251)
                                      ...++.++++. +++    .+..++++.+||+|||||++||+||+    .+|+++||||||++|
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L  254 (322)
T 1e69_A          175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL  254 (322)
T ss_dssp             HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred             HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence                            01111223332 111    23356788999999999999999997    689999999999999


Q ss_pred             CHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEE--EEeeCCEE
Q psy7367         164 DPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRI--AIIAAGKL  209 (251)
Q Consensus       164 D~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i--~~l~~G~i  209 (251)
                      |+..++.++++++++.++.+||++||+++ +..+||++  ++|.+|..
T Consensus       255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~~~v~~~~g~s  301 (322)
T 1e69_A          255 DDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLLHGVTMVNGVS  301 (322)
T ss_dssp             CHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEEEEEEESSSCE
T ss_pred             CHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceEEEEEEeCCEE
Confidence            99999999999999876899999999965 56789987  88888854

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.97  E-value=7.5e-33  Score=226.12  Aligned_cols=146  Identities=12%  Similarity=0.124  Sum_probs=105.9

Q ss_pred             eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCC-CCCCHHHHHHH
Q psy7367          19 GLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALF-DKLTVEEHMWF   97 (251)
Q Consensus        19 ~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~-~~ltv~e~l~~   97 (251)
                      |+||++++||+++|+||||||||||+|++.+      |...+.       ...++   ++++|++.-. ..-++++++..
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~-------~d~~~---g~~~~~~~~~~~~~~~~~~~~~   64 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVIS-------SDFCR---GLMSDDENDQTVTGAAFDVLHY   64 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEE-------HHHHH---HHHCSSTTCGGGHHHHHHHHHH
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEc-------cHHHH---HHhcCcccchhhHHHHHHHHHH
Confidence            6899999999999999999999999999653      111111       12222   6777765311 10112222211


Q ss_pred             HHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH-----------
Q psy7367          98 YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY-----------  166 (251)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~-----------  166 (251)
                                    .. ......+.....+ .....|+|||||++||+|++.+|++|+|||||++||+.           
T Consensus        65 --------------~~-~~~~~~g~~~~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~  128 (171)
T 4gp7_A           65 --------------IV-SKRLQLGKLTVVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEE  128 (171)
T ss_dssp             --------------HH-HHHHHTTCCEEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCH
T ss_pred             --------------HH-HHHHhCCCeEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCH
Confidence                          11 1222345554444 34566999999999999999999999999999999999           


Q ss_pred             -----HHHHHHHHHHhhh-CCCeEEEEeCCHHHHHh
Q psy7367         167 -----SRRSIWELLIKYK-KGRTVILTTHYMDEADL  196 (251)
Q Consensus       167 -----~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~  196 (251)
                           .+..+++.+++++ +|.|+|++|||++++..
T Consensus       129 ~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~  164 (171)
T 4gp7_A          129 YVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE  164 (171)
T ss_dssp             HHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred             HHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence                 5688899988875 59999999999999976

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.97  E-value=5.3e-35  Score=269.49  Aligned_cols=175  Identities=12%  Similarity=0.087  Sum_probs=144.6

Q ss_pred             cceeeeeeEEEeCCc--------------------EEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhh
Q psy7367          14 KLAVNGLNVNFYEDQ--------------------ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIR   73 (251)
Q Consensus        14 ~~il~~isl~i~~Ge--------------------~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~   73 (251)
                      +.+|++|||+|++|+                    +++|+||||||||||+|+|+|+.+|++|+|.++|.++.      +
T Consensus        36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------~  109 (413)
T 1tq4_A           36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------M  109 (413)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----------C
T ss_pred             HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc------e
Confidence            468999999999999                    99999999999999999999999999999999887652      1


Q ss_pred             cceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChh--HHHHHHHHHHHcc--
Q psy7367          74 RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGG--MQRKLSVAMAFIG--  149 (251)
Q Consensus        74 ~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG--~kqrv~ia~al~~--  149 (251)
                        .++++|++ .++.+|+.|++.++..         +.+++++++.+++.+.. ..+. ||+|  |+||++||+||+.  
T Consensus       110 --~~~v~q~~-~~~~ltv~D~~g~~~~---------~~~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~la~aL~~~~  175 (413)
T 1tq4_A          110 --ERHPYKHP-NIPNVVFWDLPGIGST---------NFPPDTYLEKMKFYEYD-FFII-ISATRFKKNDIDIAKAISMMK  175 (413)
T ss_dssp             --CCEEEECS-SCTTEEEEECCCGGGS---------SCCHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHHHHHHHHHTT
T ss_pred             --eEEecccc-ccCCeeehHhhcccch---------HHHHHHHHHHcCCCccC-CeEE-eCCCCccHHHHHHHHHHHhcC
Confidence              27899985 5678899998755421         12467889999987653 3343 9999  9999999999999  


Q ss_pred             --------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhh------C----CCeEEEEeCCHHH--HHhhcCEEE-EeeCCE
Q psy7367         150 --------GSRTVILDEPTSGVDPYSRRSIWELLIKYK------K----GRTVILTTHYMDE--ADLLGDRIA-IIAAGK  208 (251)
Q Consensus       150 --------~p~llllDEPt~gLD~~~~~~l~~~l~~l~------~----g~tiii~tHd~~~--~~~~~d~i~-~l~~G~  208 (251)
                              +|++++|||||+|||+..++.+++.++++.      .    ..+|+++||+++.  ++++||++. .|..|+
T Consensus       176 ~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          176 KEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             CEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             CCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence                    999999999999999999999999998862      2    2678999999988  999999884 455554

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.97  E-value=1.3e-35  Score=249.16  Aligned_cols=175  Identities=10%  Similarity=0.048  Sum_probs=128.7

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEEccCCCCCCCCCHH
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVE   92 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~ltv~   92 (251)
                      ..+++|  .+|++||+++|+||||||||||+|+|+|+++.    +.+++..... .....++.++|+||++.+|+.+|+.
T Consensus         9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~   82 (207)
T 1znw_A            9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ   82 (207)
T ss_dssp             ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred             CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence            467888  79999999999999999999999999999863    3443321111 1112356799999999888888888


Q ss_pred             HHHHHHH------HhcCCChHHHHHHHHHH------HHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          93 EHMWFYS------QLKQVPKDLAQLEISNM------IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        93 e~l~~~~------~~~~~~~~~~~~~~~~~------l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      +++..+.      ..++.+..+.++++.+.      ++.+++....++++.+||           ||+.+|++++|||||
T Consensus        83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~  151 (207)
T 1znw_A           83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARL  151 (207)
T ss_dssp             TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHH
T ss_pred             CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHH
Confidence            8764321      22344444555566665      666777777778888898           999999999999999


Q ss_pred             CCC----CHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEee
Q psy7367         161 SGV----DPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIA  205 (251)
Q Consensus       161 ~gL----D~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~  205 (251)
                      +++    |+..++.+++++++++  .|.|+|++|||++++..+|||+++|.
T Consensus       152 ~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~  202 (207)
T 1znw_A          152 IGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT  202 (207)
T ss_dssp             HTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence            998    7889999999999985  38999999999999999999999884

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.97  E-value=2.7e-32  Score=224.85  Aligned_cols=147  Identities=12%  Similarity=0.048  Sum_probs=109.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-hHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChH
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD  107 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~  107 (251)
                      .++|+||||||||||+|+|+|++.     |.++|.+.... ....++.+||++|++      ++.+++ + ..+. .   
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~-~---   64 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF-F---   64 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETT-C---
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhhc-C---
Confidence            689999999999999999999985     45566543211 113457899999986      222222 1 1110 0   


Q ss_pred             HHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHH-----HccCCCEEEEeC--CCCCCCHHHHHHHHHHHHhhhC
Q psy7367         108 LAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMA-----FIGGSRTVILDE--PTSGVDPYSRRSIWELLIKYKK  180 (251)
Q Consensus       108 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~a-----l~~~p~llllDE--Pt~gLD~~~~~~l~~~l~~l~~  180 (251)
                                   .-.+..++++.+||||||||++||+|     ++.+|+++||||  ||++||+..++.+.+++.+  .
T Consensus        65 -------------~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~  129 (178)
T 1ye8_A           65 -------------TSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--P  129 (178)
T ss_dssp             -------------CCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--T
T ss_pred             -------------CccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--C
Confidence                         00145678899999999999999996     999999999999  9999999999999998876  4


Q ss_pred             CCeEEEEe---CCHHHHHhhcCEEEEeeCCEEEe
Q psy7367         181 GRTVILTT---HYMDEADLLGDRIAIIAAGKLQC  211 (251)
Q Consensus       181 g~tiii~t---Hd~~~~~~~~d~i~~l~~G~i~~  211 (251)
                      +.|+|++|   ||.+++..+|+|    .+|+++.
T Consensus       130 ~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~  159 (178)
T 1ye8_A          130 NVNVVATIPIRDVHPLVKEIRRL----PGAVLIE  159 (178)
T ss_dssp             TSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred             CCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence            67788888   599999999997    4566654

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.97  E-value=1.6e-32  Score=243.90  Aligned_cols=175  Identities=18%  Similarity=0.195  Sum_probs=144.2

Q ss_pred             eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh-----HHh--hcceEEEccCCC-CCCC
Q psy7367          17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM-----TTI--RRSLGVCPQYNA-LFDK   88 (251)
Q Consensus        17 l~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~-----~~~--~~~i~~v~q~~~-l~~~   88 (251)
                      +.++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++....     ..+  +..|+|++|++. +++.
T Consensus        90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~  169 (302)
T 3b9q_A           90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA  169 (302)
T ss_dssp             CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred             ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence            46789999999999999999999999999999999999999999999875421     122  357999999998 8888


Q ss_pred             CCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC--EEEEeCCCCCCCHH
Q psy7367          89 LTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR--TVILDEPTSGVDPY  166 (251)
Q Consensus        89 ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~--llllDEPt~gLD~~  166 (251)
                      +|++||+.++.. .+..        ..+++.+|+.+..++++.+||   |||++||||++.+|+  +|+|| ||+|||+.
T Consensus       170 ~~v~e~l~~~~~-~~~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~  236 (302)
T 3b9q_A          170 TVLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNML  236 (302)
T ss_dssp             HHHHHHHHHHHH-TTCS--------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGH
T ss_pred             HHHHHHHHHHHH-cCCc--------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHH
Confidence            999999987542 1111        134677888877778899999   999999999999999  99999 99999998


Q ss_pred             HHHHHHHHHHhhh--CCCeEEEEeC---------CHHHHHhhcCEEEEeeCCEEE
Q psy7367         167 SRRSIWELLIKYK--KGRTVILTTH---------YMDEADLLGDRIAIIAAGKLQ  210 (251)
Q Consensus       167 ~~~~l~~~l~~l~--~g~tiii~tH---------d~~~~~~~~d~i~~l~~G~i~  210 (251)
                      .+.      +++.  .|.|+|++||         .++.+...++.|.++..|+.+
T Consensus       237 ~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~  285 (302)
T 3b9q_A          237 PQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV  285 (302)
T ss_dssp             HHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred             HHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence            652      3443  3899999999         667787888999999999753

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.96  E-value=1.4e-32  Score=255.46  Aligned_cols=191  Identities=14%  Similarity=0.122  Sum_probs=155.2

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcce---eCCC------ChHH
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH---DIRT------DMTT   71 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~---~~~~------~~~~   71 (251)
                      ++++++++.|+.+..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|++|.|.++|+   ++..      ....
T Consensus       132 l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~  210 (438)
T 2dpy_A          132 LQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDG  210 (438)
T ss_dssp             TTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHH
T ss_pred             eEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccc
Confidence            35678999996347799999 999999999999999999999999999999999999999998   4421      0234


Q ss_pred             hhcceEEEccC-CCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccC
Q psy7367          72 IRRSLGVCPQY-NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGG  150 (251)
Q Consensus        72 ~~~~i~~v~q~-~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~  150 (251)
                      +++.++|++|. ..+++.+|+.+|+.+..++.....    +         ......+ .+..||+|| ||++||   +.+
T Consensus       211 l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~----~---------~v~~~ld-~l~~lS~g~-qrvslA---l~~  272 (438)
T 2dpy_A          211 RARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG----Q---------HVLLIMD-SLTRYAMAQ-REIALA---IGE  272 (438)
T ss_dssp             HHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT----C---------EEEEEEE-CHHHHHHHH-HHHHHH---TTC
T ss_pred             cCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC----C---------CHHHHHH-hHHHHHHHH-HHHHHH---hCC
Confidence            56789999995 556778899999988655321100    0         1111222 367899999 999999   889


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHhhhC-----CC-----eEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         151 SRTVILDEPTSGVDPYSRRSIWELLIKYKK-----GR-----TVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       151 p~llllDEPt~gLD~~~~~~l~~~l~~l~~-----g~-----tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      |++      |+|||+..+..+.+++.++.+     |.     ||+++|||++  ..+||++++|.+|+++.++++.++
T Consensus       273 p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~~~~~~  342 (438)
T 2dpy_A          273 PPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLSRRLAEA  342 (438)
T ss_dssp             CCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred             Ccc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEEeCCHHHc
Confidence            988      999999999999999998743     64     9999999999  678999999999999999887654

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.96  E-value=1.3e-34  Score=257.21  Aligned_cols=163  Identities=12%  Similarity=0.066  Sum_probs=129.4

Q ss_pred             EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEcc
Q psy7367           2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQ   81 (251)
Q Consensus         2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q   81 (251)
                      +++||+++|+  .++|+++||+|++|++++|+||||||||||+++|+|++   +|+|.                 +|++|
T Consensus       103 ~~~~vs~~y~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~-----------------~~v~q  160 (305)
T 2v9p_A          103 NYQNIELITF--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL-----------------SFANH  160 (305)
T ss_dssp             HHTTCCHHHH--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE-----------------CGGGT
T ss_pred             EEEEEEEEcC--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE-----------------EEecC
Confidence            4578889995  67999999999999999999999999999999999998   79883                 46678


Q ss_pred             CCCCCCCCCHHH-HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          82 YNALFDKLTVEE-HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        82 ~~~l~~~ltv~e-~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      ++.+|.. |+++ |+.+...   ..     ..+.+.++.+ +....+  +..||||||||   ||||+.+|++||    |
T Consensus       161 ~~~lf~~-ti~~~ni~~~~~---~~-----~~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----T  221 (305)
T 2v9p_A          161 KSHFWLA-SLADTRAALVDD---AT-----HACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----T  221 (305)
T ss_dssp             TSGGGGG-GGTTCSCEEEEE---EC-----HHHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----E
T ss_pred             ccccccc-cHHHHhhccCcc---cc-----HHHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----E
Confidence            8777764 7776 7765311   11     1344556664 444444  78999999999   999999999999    9


Q ss_pred             CCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         161 SGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      |+||+.+...+..             .||++..+ ..||+| +|++|++++.|+++++..
T Consensus       222 s~LD~~~~~~i~~-------------ltH~~~~~-~~aD~i-vl~~G~iv~~g~~~el~~  266 (305)
T 2v9p_A          222 SNIDVQAEDRYLY-------------LHSRVQTF-RFEQPC-TDESGEQPFNITDADWKS  266 (305)
T ss_dssp             ESSCSTTCGGGGG-------------GTTTEEEE-ECCCCC-CCC---CCCCCCHHHHHH
T ss_pred             CCCCHHHHHHHHH-------------HhCCHHHH-HhCCEE-EEeCCEEEEeCCHHHHHH
Confidence            9999999888862             18998875 579999 999999999999988743

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.96  E-value=5.8e-31  Score=238.62  Aligned_cols=174  Identities=18%  Similarity=0.199  Sum_probs=144.7

Q ss_pred             eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh-----HHh--hcceEEEccCCC-CCCCC
Q psy7367          18 NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM-----TTI--RRSLGVCPQYNA-LFDKL   89 (251)
Q Consensus        18 ~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~-----~~~--~~~i~~v~q~~~-l~~~l   89 (251)
                      ..+||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++....     ..+  +..|+|++|++. +++.+
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~  227 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT  227 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence            5789999999999999999999999999999999999999999999875421     122  457999999988 88889


Q ss_pred             CHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHH
Q psy7367          90 TVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR--TVILDEPTSGVDPYS  167 (251)
Q Consensus        90 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~--llllDEPt~gLD~~~  167 (251)
                      |++||+.++.. .+..        ..+++.+|+.+..++++.+||   |||++||||++.+|+  +|+|| ||+|||+..
T Consensus       228 tv~e~l~~~~~-~~~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~  294 (359)
T 2og2_A          228 VLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP  294 (359)
T ss_dssp             HHHHHHHHHHH-TTCS--------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHH
T ss_pred             hHHHHHHHHHh-CCCH--------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHH
Confidence            99999987643 1111        134667788877778899999   999999999999999  99999 999999986


Q ss_pred             HHHHHHHHHhhh--CCCeEEEEeC---------CHHHHHhhcCEEEEeeCCEEE
Q psy7367         168 RRSIWELLIKYK--KGRTVILTTH---------YMDEADLLGDRIAIIAAGKLQ  210 (251)
Q Consensus       168 ~~~l~~~l~~l~--~g~tiii~tH---------d~~~~~~~~d~i~~l~~G~i~  210 (251)
                      +.      +++.  .|.|+|++||         .++.+...+..|.++..|+.+
T Consensus       295 ~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~  342 (359)
T 2og2_A          295 QA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV  342 (359)
T ss_dssp             HH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred             HH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence            53      3342  3899999999         567777888999999999753

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.95  E-value=6e-33  Score=235.33  Aligned_cols=177  Identities=12%  Similarity=0.004  Sum_probs=119.9

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC--hHHhhcceEEEccCCCCCCCCCH
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD--MTTIRRSLGVCPQYNALFDKLTV   91 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~~~i~~v~q~~~l~~~ltv   91 (251)
                      ..-|+||||+|++|++++|+||||||||||+++|+|++ |  |+|.+ |.++...  ....++.++|+||++.+|+.++.
T Consensus        10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   85 (218)
T 1z6g_A           10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK   85 (218)
T ss_dssp             ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred             cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence            45799999999999999999999999999999999998 6  99999 8766321  11235689999999877665431


Q ss_pred             -HHHHH---HHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHH-----HHHHccCCCEEEEeCCCCC
Q psy7367          92 -EEHMW---FYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSV-----AMAFIGGSRTVILDEPTSG  162 (251)
Q Consensus        92 -~e~l~---~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~i-----a~al~~~p~llllDEPt~g  162 (251)
                       .+++.   +....++.+.    ..++++++...+. ..+   .+|||||+||++|     |++|+.+|++++|||||++
T Consensus        86 ~~~~l~~~~~~~~~~g~~~----~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~  157 (218)
T 1z6g_A           86 NEDFLEYDNYANNFYGTLK----SEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLT  157 (218)
T ss_dssp             TTCEEEEEEETTEEEEEEH----HHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHH
T ss_pred             ccchhhhhhcccccCCCcH----HHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHh
Confidence             12221   1111222222    2355666654432 222   5799999999999     8999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhh--------CCCeEEEEeCCHHHHHhhcCEEE
Q psy7367         163 VDPYSRRSIWELLIKYK--------KGRTVILTTHYMDEADLLGDRIA  202 (251)
Q Consensus       163 LD~~~~~~l~~~l~~l~--------~g~tiii~tHd~~~~~~~~d~i~  202 (251)
                      +|..+...+.+.+.+..        .....|+++||++++...+++++
T Consensus       158 ~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii  205 (218)
T 1z6g_A          158 RNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYL  205 (218)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHH
Confidence            99988888888776552        34667778888877777666554

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.95  E-value=1.1e-30  Score=228.51  Aligned_cols=148  Identities=15%  Similarity=0.131  Sum_probs=100.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHH
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDL  108 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~  108 (251)
                      .++|+||||||||||+|+|+|+.+|++|+|.++|+++...  ..++.++|++|++.+++.+||.||+.|+....+...  
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~--~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~--   79 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT--VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC--   79 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC------------CCCC--CSCCEEEESCC----CCEEEEECCCC--CCSBCTTC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc--eeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH--
Confidence            4899999999999999999999999999999999887432  235789999999999999999999988754432111  


Q ss_pred             HHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEe
Q psy7367         109 AQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTT  188 (251)
Q Consensus       109 ~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~t  188 (251)
                       .+.+.+++.    ....+..+.+||||||||+++|||++.   ++++|||+++||+..    .++++.+++..+||++.
T Consensus        80 -~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~~~vI~Vi  147 (270)
T 3sop_A           80 -WEPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKVVNIIPVI  147 (270)
T ss_dssp             -SHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTTSEEEEEE
T ss_pred             -HHHHHHHHH----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhcCcEEEEE
Confidence             122333333    345566788999999999999999886   999999999999987    44555554338888888


Q ss_pred             CCHH
Q psy7367         189 HYMD  192 (251)
Q Consensus       189 Hd~~  192 (251)
                      |..+
T Consensus       148 ~K~D  151 (270)
T 3sop_A          148 AKAD  151 (270)
T ss_dssp             TTGG
T ss_pred             eccc
Confidence            8764

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.95  E-value=3.8e-32  Score=242.41  Aligned_cols=157  Identities=11%  Similarity=0.066  Sum_probs=121.0

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcC
Q psy7367          24 FYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ  103 (251)
Q Consensus        24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~  103 (251)
                      +++|+++||+||||||||||+++|+|+++|+.|.                +++++++|++.+++. |+.||+.+.. .++
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~----------------~~v~~v~qd~~~~~~-t~~e~~~~~~-~~g  148 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH----------------PRVDLVTTDGFLYPN-AELQRRNLMH-RKG  148 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC----------------CCEEEEEGGGGBCCH-HHHHHTTCTT-CTT
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccccCCC----------------CeEEEEecCccCCcc-cHHHHHHHHH-hcC
Confidence            8999999999999999999999999999997553                458999999998887 9999986532 123


Q ss_pred             CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhC--C
Q psy7367         104 VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK--G  181 (251)
Q Consensus       104 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--g  181 (251)
                      .+.....+.+.++++.++ ....+.++.+||+||+||+++|+|++.+|++||||||++.+|+..        ..+.+  +
T Consensus       149 ~~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~~D  219 (312)
T 3aez_A          149 FPESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LMVSDLFD  219 (312)
T ss_dssp             SGGGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CCGGGGCS
T ss_pred             CChHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HHHHHhcC
Confidence            333333456778888888 555567788999999999999999999999999999999998621        12221  3


Q ss_pred             CeEEEEeCCHHHH-HhhcCEEEEeeCCE
Q psy7367         182 RTVILTTHYMDEA-DLLGDRIAIIAAGK  208 (251)
Q Consensus       182 ~tiii~tHd~~~~-~~~~d~i~~l~~G~  208 (251)
                      . +|+++|+.+.. .++++|.+.+.++.
T Consensus       220 ~-~I~V~a~~~~~~~R~i~R~~~~rd~~  246 (312)
T 3aez_A          220 F-SLYVDARIEDIEQWYVSRFLAMRTTA  246 (312)
T ss_dssp             E-EEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred             c-EEEEECCHHHHHHHHHHHHHHHHhcc
Confidence            4 46667777553 44566666565543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.94  E-value=5.7e-31  Score=249.77  Aligned_cols=176  Identities=17%  Similarity=0.211  Sum_probs=130.6

Q ss_pred             eEEEEeCCCcceeeeeeE-EEeCCcEEEEEcCCCCcHHHHHHH--HhCCCCCCeeEEEEcceeCCCChHHhhcceEEEcc
Q psy7367           5 NLSKRFPNGKLAVNGLNV-NFYEDQITSFLGHNGAGKTTTISM--LMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQ   81 (251)
Q Consensus         5 ~l~~~y~~~~~il~~isl-~i~~Ge~~~liG~NGaGKSTLlk~--l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q   81 (251)
                      ++.+ |..+.++|+++|| +|++|++++|+||||||||||+++  ++|+.+|++|.|+++|++........++.+||+||
T Consensus        17 ~~~~-~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q   95 (525)
T 1tf7_A           17 AIAK-MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLA   95 (525)
T ss_dssp             SCCE-ECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHH
T ss_pred             cccc-ccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChH
Confidence            4443 4345789999999 999999999999999999999999  78999999999999998743222344578999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q psy7367          82 YNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTS  161 (251)
Q Consensus        82 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~  161 (251)
                      ++....+      +.+ ..... ..     ...++++.+++.+..++.+.+||+|             +|+++++||||+
T Consensus        96 ~~~~~~~------l~~-~~~~~-~~-----~~~~~l~~~~l~~~~~~~~~~LS~g-------------~~~~lilDe~t~  149 (525)
T 1tf7_A           96 KLVDEGK------LFI-LDASP-DP-----EGQEVVGGFDLSALIERINYAIQKY-------------RARRVSIDSVTS  149 (525)
T ss_dssp             HHHHTTS------EEE-EECCC-CS-----SCCSCCSSHHHHHHHHHHHHHHHHH-------------TCSEEEEECSTT
T ss_pred             HhhccCc------EEE-EecCc-cc-----chhhhhcccCHHHHHHHHHHHHHHc-------------CCCEEEECCHHH
Confidence            8653211      100 00000 00     0112333444444555556666665             588999999998


Q ss_pred             -----CCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHH---------HhhcCEEEEeeCC
Q psy7367         162 -----GVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEA---------DLLGDRIAIIAAG  207 (251)
Q Consensus       162 -----gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~---------~~~~d~i~~l~~G  207 (251)
                           +||+..++.+++++++++ .|+|||++||+++++         ..+||++++|++|
T Consensus       150 ~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~  210 (525)
T 1tf7_A          150 VFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV  210 (525)
T ss_dssp             TSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence                 469999999999999986 499999999999984         5669999999983

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.94  E-value=1.7e-29  Score=228.31  Aligned_cols=191  Identities=19%  Similarity=0.207  Sum_probs=142.5

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC--------ChHHh
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT--------DMTTI   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~--------~~~~~   72 (251)
                      ++++++++.|+.+..+++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|++...        .....
T Consensus        46 i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~  124 (347)
T 2obl_A           46 LLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTL  124 (347)
T ss_dssp             TTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHH
T ss_pred             eeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhh
Confidence            35678999996457899999 9999999999999999999999999999999999999999875211        11123


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGGS  151 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~p  151 (251)
                      ++.+.+++|...     +..+.+......         ..+.+.+...+-.- ..-..+..||+|| ||+++|   +.+|
T Consensus       125 ~~~v~~~~~~~~-----~~~~r~~~~~~~---------~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p  186 (347)
T 2obl_A          125 SKCVLVVTTSDR-----PALERMKAAFTA---------TTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEP  186 (347)
T ss_dssp             TTEEEEEECTTS-----CHHHHHHHHHHH---------HHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCC
T ss_pred             hceEEEEECCCC-----CHHHHHHHHHHH---------HHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCC
Confidence            456788887532     233333211100         00111111111100 0114688999999 899999   6888


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHhhh--C-CC-----eEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         152 RTVILDEPTSGVDPYSRRSIWELLIKYK--K-GR-----TVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       152 ~llllDEPt~gLD~~~~~~l~~~l~~l~--~-g~-----tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      ++      |+||||..+..+.+++.++.  + |.     ||+++|||++  +.+||++++|.+|+++.++++.++
T Consensus       187 ~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~~l~~~  253 (347)
T 2obl_A          187 DV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTRELAEE  253 (347)
T ss_dssp             CC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred             Cc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeCCHHHc
Confidence            87      99999999999999999984  4 77     9999999999  678999999999999999877644

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.94  E-value=6e-29  Score=223.35  Aligned_cols=132  Identities=16%  Similarity=0.173  Sum_probs=111.6

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHH
Q psy7367          16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHM   95 (251)
Q Consensus        16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l   95 (251)
                      +++++||++++|++++|+||||||||||+++|+|+++|++|.|.++|.+... ....++.++++++              
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~-~~~~~~~i~~~~g--------------  224 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV-FKHHKNYTQLFFG--------------  224 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCC-CSSCSSEEEEECB--------------
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccc-cccchhEEEEEeC--------------
Confidence            7899999999999999999999999999999999999999999999865211 1113445666541              


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy7367          96 WFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL  175 (251)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l  175 (251)
                                                             |||+||++||+||..+|+++|+||||+       ..+++.|
T Consensus       225 ---------------------------------------gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l  258 (330)
T 2pt7_A          225 ---------------------------------------GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFY  258 (330)
T ss_dssp             ---------------------------------------TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHH
T ss_pred             ---------------------------------------CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHH
Confidence                                                   899999999999999999999999998       2356777


Q ss_pred             HhhhCC-CeEEEEeCCHHHHHhhcCEEEEeeCCEE
Q psy7367         176 IKYKKG-RTVILTTHYMDEADLLGDRIAIIAAGKL  209 (251)
Q Consensus       176 ~~l~~g-~tiii~tHd~~~~~~~~d~i~~l~~G~i  209 (251)
                      +.+..| .|+|++||+++ +...|||+++|.+|..
T Consensus       259 ~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~  292 (330)
T 2pt7_A          259 NVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSNS  292 (330)
T ss_dssp             HHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTSG
T ss_pred             HHHhcCCCEEEEEEcccH-HHHHhhhheehhcCCc
Confidence            777665 58999999998 6778999999998864

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.94  E-value=1.4e-26  Score=209.95  Aligned_cols=86  Identities=19%  Similarity=0.226  Sum_probs=77.8

Q ss_pred             CCCCC-cCChhHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHh
Q psy7367         127 TSLAN-TLSGGMQRKLSVAMAFI---------GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADL  196 (251)
Q Consensus       127 ~~~~~-~LSgG~kqrv~ia~al~---------~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~  196 (251)
                      ++++. .||+|||||++||++|+         .+|++|||||||++||+..+..+++.+.++.  .|+|++||. +.   
T Consensus       259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th~-~~---  332 (359)
T 2o5v_A          259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTEL-AP---  332 (359)
T ss_dssp             TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESSC-CT---
T ss_pred             CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEec-cc---
Confidence            45677 89999999999999999         8999999999999999999999999998875  799999994 44   


Q ss_pred             hcCEEEEeeCCEEEeecCHHHH
Q psy7367         197 LGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       197 ~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      .||++++|++|+++..|+++++
T Consensus       333 ~~~~i~~l~~G~i~~~g~~~~~  354 (359)
T 2o5v_A          333 GAALTLRAQAGRFTPVADEEMQ  354 (359)
T ss_dssp             TCSEEEEEETTEEEECCCTTTS
T ss_pred             cCCEEEEEECCEEEecCCHHHH
Confidence            8999999999999999987643

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.94  E-value=5.8e-28  Score=212.68  Aligned_cols=183  Identities=13%  Similarity=0.061  Sum_probs=128.1

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCee-EEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG-TAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE   92 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~   92 (251)
                      ..+|+++++.+++|++++|+||||||||||+++|+|...|++| .|.+.+.+..  ...+++++.++++...+    ++.
T Consensus        22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~--~~~~~~r~~~~~~~~~~----~~~   95 (296)
T 1cr0_A           22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES--VEETAEDLIGLHNRVRL----RQS   95 (296)
T ss_dssp             CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC--HHHHHHHHHHHHTTCCG----GGC
T ss_pred             HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC--HHHHHHHHHHHHcCCCh----hhc
Confidence            4689999999999999999999999999999999999999888 7866554432  23344445455544322    233


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhH-HHHHHHHHHHccCCCEEEEeCCCC---C---CCH
Q psy7367          93 EHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGM-QRKLSVAMAFIGGSRTVILDEPTS---G---VDP  165 (251)
Q Consensus        93 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~-kqrv~ia~al~~~p~llllDEPt~---g---LD~  165 (251)
                      +++.... +   ...+..+.+.++++..++  .....+..+|.++ +||+. |+++..+|+++|+||||+   +   +|.
T Consensus        96 ~~l~~~~-~---~~~~~~~~~~~~l~~~~l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~  168 (296)
T 1cr0_A           96 DSLKREI-I---ENGKFDQWFDELFGNDTF--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDE  168 (296)
T ss_dssp             HHHHHHH-H---HHTHHHHHHHHHHSSSCE--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------
T ss_pred             cccccCC-C---CHHHHHHHHHHHhccCCE--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCH
Confidence            4443321 1   122223344445443333  1233456789998 67776 999999999999999999   5   555


Q ss_pred             -HHHHHHHHHHHhhh-C-CCeEEEEeCCH--H--------------------HHHhhcCEEEEeeCCEE
Q psy7367         166 -YSRRSIWELLIKYK-K-GRTVILTTHYM--D--------------------EADLLGDRIAIIAAGKL  209 (251)
Q Consensus       166 -~~~~~l~~~l~~l~-~-g~tiii~tHd~--~--------------------~~~~~~d~i~~l~~G~i  209 (251)
                       .....+++.|+++. + |+|||++||+.  +                    .++.+||+|++|++|+.
T Consensus       169 ~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          169 RKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred             HHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence             67788999998884 4 99999999995  5                    78889999999999875

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.94  E-value=3.9e-26  Score=205.43  Aligned_cols=79  Identities=29%  Similarity=0.412  Sum_probs=71.3

Q ss_pred             cCCCCCcCChhHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhc
Q psy7367         126 RTSLANTLSGGMQR------KLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLG  198 (251)
Q Consensus       126 ~~~~~~~LSgG~kq------rv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~  198 (251)
                      .++++.+|||||||      |+++|+||+.+|++|||||||++||+..+..++++|.++. +|.|||++|||.+ +..+|
T Consensus       242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~  320 (339)
T 3qkt_A          242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA  320 (339)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred             CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhC
Confidence            46788999999999      6788888899999999999999999999999999999975 5889999999965 57789


Q ss_pred             CEEEEee
Q psy7367         199 DRIAIIA  205 (251)
Q Consensus       199 d~i~~l~  205 (251)
                      |++++|+
T Consensus       321 d~~~~l~  327 (339)
T 3qkt_A          321 DHVIRIS  327 (339)
T ss_dssp             SEEEEEE
T ss_pred             CEEEEEE
Confidence            9999986

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.94  E-value=2.7e-28  Score=246.07  Aligned_cols=169  Identities=17%  Similarity=0.262  Sum_probs=123.9

Q ss_pred             CEEEe-----EEEEeCCCcceeeeeeEEEeC-------CcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC
Q psy7367           1 MAIQN-----LSKRFPNGKLAVNGLNVNFYE-------DQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD   68 (251)
Q Consensus         1 l~i~~-----l~~~y~~~~~il~~isl~i~~-------Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~   68 (251)
                      |+++|     |++.|.++..+++|++|++++       |++++|+||||||||||||++ |++.+               
T Consensus       751 l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~---------------  814 (1022)
T 2o8b_B          751 LELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV---------------  814 (1022)
T ss_dssp             EEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH---------------
T ss_pred             EEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH---------------
Confidence            46788     999994346899999999987       999999999999999999999 98763               


Q ss_pred             hHHhhcceE-EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHH
Q psy7367          69 MTTIRRSLG-VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        69 ~~~~~~~i~-~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                          ..++| ||||++.   .+|+.|++.                     .++|+.+...+..+.+|+++++ +++|+++
T Consensus       815 ----~aqiG~~Vpq~~~---~l~v~d~I~---------------------~rig~~d~~~~~~stf~~em~~-~a~al~l  865 (1022)
T 2o8b_B          815 ----MAQMGCYVPAEVC---RLTPIDRVF---------------------TRLGASDRIMSGESTFFVELSE-TASILMH  865 (1022)
T ss_dssp             ----HHTTTCCEESSEE---EECCCSBEE---------------------EECC---------CHHHHHHHH-HHHHHHH
T ss_pred             ----HhheeEEeccCcC---CCCHHHHHH---------------------HHcCCHHHHhhchhhhHHHHHH-HHHHHHh
Confidence                13456 9999863   456655541                     1223333344456788888876 9999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHH-HHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEE--eecCH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSR-RSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQ--CCGSS  215 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~-~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~--~~g~~  215 (251)
                      +.+|+++|||||++|+|+... ..+++++..+. + |+++|++||+++++..+||++.++ +|++.  ..|++
T Consensus       866 a~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~  937 (1022)
T 2o8b_B          866 ATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENEC  937 (1022)
T ss_dssp             CCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-----
T ss_pred             CCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCc
Confidence            999999999999999999985 55788888884 5 899999999999999999999887 58887  44544

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.93  E-value=4.6e-28  Score=208.22  Aligned_cols=167  Identities=12%  Similarity=0.098  Sum_probs=111.9

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367          13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE   92 (251)
Q Consensus        13 ~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~   92 (251)
                      ++++|+|+||++++|+++||+||||||||||+++|+|++    |.+.++         ..++.++|++|+. +++.+|+.
T Consensus        11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~---------~~~~~i~~v~~d~-~~~~l~~~   76 (245)
T 2jeo_A           11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE---------QRQRKVVILSQDR-FYKVLTAE   76 (245)
T ss_dssp             ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC---------GGGCSEEEEEGGG-GBCCCCHH
T ss_pred             CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc---------ccCCceEEEeCCc-CccccCHh
Confidence            467999999999999999999999999999999999976    444433         2467899999995 77789999


Q ss_pred             HHHHHHHHhcCCC--hHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH
Q psy7367          93 EHMWFYSQLKQVP--KDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS  170 (251)
Q Consensus        93 e~l~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~  170 (251)
                      +++.+........  .....+.+.+.++.+  .+..+.++..||+||+||+++ ++++.+|+++|+|||....|..    
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~----  149 (245)
T 2jeo_A           77 QKAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE----  149 (245)
T ss_dssp             HHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH----
T ss_pred             HhhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH----
Confidence            9997755433221  111123344555543  344567889999999999988 6889999999999999888864    


Q ss_pred             HHHHHHhhhCCCeEEEEeCCHHHH-HhhcCEEEEeeCCE
Q psy7367         171 IWELLIKYKKGRTVILTTHYMDEA-DLLGDRIAIIAAGK  208 (251)
Q Consensus       171 l~~~l~~l~~g~tiii~tHd~~~~-~~~~d~i~~l~~G~  208 (251)
                          +.++ .+.+|+++||+...+ ..+++++   ++|+
T Consensus       150 ----l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~  180 (245)
T 2jeo_A          150 ----IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR  180 (245)
T ss_dssp             ----HHTT-CSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred             ----HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence                2222 378999999974444 4555544   6664

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.93  E-value=2.6e-27  Score=224.66  Aligned_cols=154  Identities=12%  Similarity=0.035  Sum_probs=123.3

Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHH
Q psy7367          21 NVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ  100 (251)
Q Consensus        21 sl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~  100 (251)
                      +..|++|++++|+||||||||||+++++|+.+|+ |+                +.+.|.+|++.    .++.++.    .
T Consensus       275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~----------------~vi~~~~ee~~----~~l~~~~----~  329 (525)
T 1tf7_A          275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE----------------RAILFAYEESR----AQLLRNA----Y  329 (525)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC----------------CEEEEESSSCH----HHHHHHH----H
T ss_pred             CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC----------------CEEEEEEeCCH----HHHHHHH----H
Confidence            4589999999999999999999999999998874 43                11345555531    0222222    1


Q ss_pred             hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH-----HHHHHHHHH
Q psy7367         101 LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY-----SRRSIWELL  175 (251)
Q Consensus       101 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~-----~~~~l~~~l  175 (251)
                      ..+...       ++ +..+|+....+.++.+||+||+||+++|+++..+|+++|+| ||++||+.     .++.+.+++
T Consensus       330 ~~g~~~-------~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll  400 (525)
T 1tf7_A          330 SWGMDF-------EE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVT  400 (525)
T ss_dssp             TTSCCH-------HH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHH
T ss_pred             HcCCCH-------HH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHH
Confidence            112221       11 23467777778889999999999999999999999999999 99999999     999999999


Q ss_pred             Hhhh-CCCeEEEEeCCH----------HHHHhhcCEEEEeeCCE
Q psy7367         176 IKYK-KGRTVILTTHYM----------DEADLLGDRIAIIAAGK  208 (251)
Q Consensus       176 ~~l~-~g~tiii~tHd~----------~~~~~~~d~i~~l~~G~  208 (251)
                      +.++ .|.|||++||+.          ..+..+||++++|++|+
T Consensus       401 ~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          401 GYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE  444 (525)
T ss_dssp             HHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred             HHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence            9985 599999999999          78888999999999887

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.93  E-value=3.2e-26  Score=216.77  Aligned_cols=79  Identities=20%  Similarity=0.289  Sum_probs=73.3

Q ss_pred             CCCCcC-ChhHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEe
Q psy7367         128 SLANTL-SGGMQRKLSVAMAFIGGS--RTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAII  204 (251)
Q Consensus       128 ~~~~~L-SgG~kqrv~ia~al~~~p--~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l  204 (251)
                      +++.+| ||||||||+||+||+.+|  ++|||||||+|||+.++..+.++|+++++|.|||+|||+++.+. +||++++|
T Consensus       392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~  470 (517)
T 4ad8_A          392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV  470 (517)
T ss_dssp             CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred             ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence            457788 999999999999999999  99999999999999999999999999866899999999999876 69999999


Q ss_pred             eCC
Q psy7367         205 AAG  207 (251)
Q Consensus       205 ~~G  207 (251)
                      +++
T Consensus       471 ~~~  473 (517)
T 4ad8_A          471 EKQ  473 (517)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            654

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.93  E-value=2.9e-26  Score=228.46  Aligned_cols=157  Identities=26%  Similarity=0.321  Sum_probs=125.7

Q ss_pred             HHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC----------hHHHHH
Q psy7367          42 TTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP----------KDLAQL  111 (251)
Q Consensus        42 TLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~----------~~~~~~  111 (251)
                      |...|..+.++|.+++|+++|+++..                  +..+++.+++.|...+. ..          ..+. .
T Consensus       383 ~C~~C~g~rl~~~~~~V~i~G~~i~~------------------~~~~~v~~~l~~~~~~~-l~~~~~~~~~~~~~~~-~  442 (916)
T 3pih_A          383 TCSVCGGRRLNREALSVKINGLNIHE------------------FTELSISEELEFLKNLN-LTEREREIVGELLKEI-E  442 (916)
T ss_dssp             ECTTTCSCCBCTTGGGEEETTEEHHH------------------HHHSBHHHHHHHHHSCC-CCTTTTTTHHHHHHHH-H
T ss_pred             cchhcccccCChHhcCcEECCccHHH------------------hhhCCHHHHHHHHHhcc-CcHHHHHHHHhhHHHH-H
Confidence            45567777889999999999988631                  22345555555432211 00          0111 2


Q ss_pred             HHHHHHHHcCCCcc-cCCCCCcCChhHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEE
Q psy7367         112 EISNMIVDLGIPHK-RTSLANTLSGGMQRKLSVAMAFIGGSR--TVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILT  187 (251)
Q Consensus       112 ~~~~~l~~~~l~~~-~~~~~~~LSgG~kqrv~ia~al~~~p~--llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~  187 (251)
                      +..++|..+||... .++++.+|||||||||+|||||+++|+  +|||||||+|||+..++.++++|++++ +|.|||+|
T Consensus       443 ~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV  522 (916)
T 3pih_A          443 KRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV  522 (916)
T ss_dssp             HHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred             HHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            34567888999865 689999999999999999999999887  999999999999999999999999996 49999999


Q ss_pred             eCCHHHHHhhcCEEEEe------eCCEEEeecCHHHHH
Q psy7367         188 THYMDEADLLGDRIAII------AAGKLQCCGSSVFLK  219 (251)
Q Consensus       188 tHd~~~~~~~~d~i~~l------~~G~i~~~g~~~~~~  219 (251)
                      |||++.+.. ||+|++|      ++|++++.|+++++.
T Consensus       523 tHd~~~~~~-aD~ii~lgpgag~~~G~iv~~G~~~e~~  559 (916)
T 3pih_A          523 EHDEEVIRN-ADHIIDIGPGGGTNGGRVVFQGTVDELL  559 (916)
T ss_dssp             CCCHHHHHT-CSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred             eCCHHHHHh-CCEEEEEcCCcccCCCEEEEeechhhhh
Confidence            999999875 9999999      999999999998764

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.91  E-value=5.2e-24  Score=211.75  Aligned_cols=129  Identities=21%  Similarity=0.324  Sum_probs=111.6

Q ss_pred             CCCCHHHHHHHHHHhcCCCh----------HHHHHHHHHHHHHcCCCcc-cCCCCCcCChhHHHHHHHHHHHccCC--CE
Q psy7367          87 DKLTVEEHMWFYSQLKQVPK----------DLAQLEISNMIVDLGIPHK-RTSLANTLSGGMQRKLSVAMAFIGGS--RT  153 (251)
Q Consensus        87 ~~ltv~e~l~~~~~~~~~~~----------~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~kqrv~ia~al~~~p--~l  153 (251)
                      ..+||.|++.|+..+ .++.          ++..+++ ++|..+||... +++++.+|||||||||+||++|+.+|  ++
T Consensus       450 ~~ltV~e~~~f~e~l-~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~l  527 (972)
T 2r6f_A          450 TAMSVTEALAFFDGL-ELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVL  527 (972)
T ss_dssp             HTSBHHHHHHHHHHC-CCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCE
T ss_pred             hhCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCE
Confidence            357999999996544 3444          2344555 46899999865 79999999999999999999999985  99


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe------eCCEEEeecCHHHH
Q psy7367         154 VILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVFL  218 (251)
Q Consensus       154 lllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l------~~G~i~~~g~~~~~  218 (251)
                      |||||||++|||...+.++++|++++ .|.|||+|+||++++. .||||++|      ++|++++.|+++++
T Consensus       528 lILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~  598 (972)
T 2r6f_A          528 YVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEV  598 (972)
T ss_dssp             EEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCSEEEEECSSSGGGCCSEEEEECTTTT
T ss_pred             EEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEeCCCccCCCCEEEEecCHHHH
Confidence            99999999999999999999999997 4999999999999886 69999999      79999999998755

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.91  E-value=4e-27  Score=208.91  Aligned_cols=163  Identities=16%  Similarity=0.136  Sum_probs=89.2

Q ss_pred             EeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCC-CCCCeeEEEEcceeCCCChHHhhcceEEEccC
Q psy7367           4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM-LPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQY   82 (251)
Q Consensus         4 ~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~   82 (251)
                      .||+++|+ ++.++++++|+|      +|+||||||||||+++|+|. ..|++| +.++|.++.... . .+.+++++|.
T Consensus         2 ~~l~~~~~-~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~-~-~~~~~~~~q~   71 (301)
T 2qnr_A            2 SNLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTV-Q-IEASTVEIEE   71 (301)
T ss_dssp             -----------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC-
T ss_pred             CCCcceEC-CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcc-e-EeeEEEEecC
Confidence            58999996 478999999998      99999999999999999998 889999 888887764321 1 3568999999


Q ss_pred             CCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCC
Q psy7367          83 NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSG  162 (251)
Q Consensus        83 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~g  162 (251)
                      ..++..+|++|+..++.....  .+    +...+.+.  +.+..++++.++|||||||+.+|||++    ++++||||++
T Consensus        72 ~~~~~~ltv~Dt~g~~~~~~~--~e----~~~~l~~~--l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~  139 (301)
T 2qnr_A           72 RGVKLRLTVVDTPGYGDAINC--RD----CFKTIISY--IDEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGH  139 (301)
T ss_dssp             --CCEEEEEEEEC-----------------CTTHHHH--HHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSS
T ss_pred             CCcccCcchhhhhhhhhhcCc--HH----HHHHHHHH--HHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCccc
Confidence            888888899998877543211  00    11111111  123345678899999999999999986    9999999984


Q ss_pred             -CCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHH
Q psy7367         163 -VDPYSRRSIWELLIKYK-K-GRTVILTTHYMD  192 (251)
Q Consensus       163 -LD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~  192 (251)
                       ||+...    ++++++. + +.++|+++||+.
T Consensus       140 ~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          140 GLKPLDV----AFMKAIHNKVNIVPVIAKADTL  168 (301)
T ss_dssp             SCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred             CCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence             999873    5555654 3 789999999974

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.90  E-value=1.3e-25  Score=195.38  Aligned_cols=132  Identities=18%  Similarity=0.138  Sum_probs=101.4

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-eeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHH
Q psy7367          15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS-SGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEE   93 (251)
Q Consensus        15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e   93 (251)
                      ++|+++|  +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++....   +..+++++|.           
T Consensus        15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~---~~~~~~v~q~-----------   78 (261)
T 2eyu_A           15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF---KHKKSIVNQR-----------   78 (261)
T ss_dssp             THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC---CCSSSEEEEE-----------
T ss_pred             HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec---CCcceeeeHH-----------
Confidence            4899999  9999999999999999999999999999998 999999987753210   1112233221           


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q psy7367          94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE  173 (251)
Q Consensus        94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~  173 (251)
                                               .+++..      ..|      |++||+||..+|+++++||||   |+.+...+++
T Consensus        79 -------------------------~~gl~~------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l~  118 (261)
T 2eyu_A           79 -------------------------EVGEDT------KSF------ADALRAALREDPDVIFVGEMR---DLETVETALR  118 (261)
T ss_dssp             -------------------------EBTTTB------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH
T ss_pred             -------------------------HhCCCH------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH
Confidence                                     233321      122      899999999999999999999   9988665443


Q ss_pred             HHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367         174 LLIKYKKGRTVILTTHYMDEADLLGDRIAIIAA  206 (251)
Q Consensus       174 ~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~  206 (251)
                         ....|.+|+++||+.+ +...|||+++|..
T Consensus       119 ---~~~~g~~vl~t~H~~~-~~~~~dri~~l~~  147 (261)
T 2eyu_A          119 ---AAETGHLVFGTLHTNT-AIDTIHRIVDIFP  147 (261)
T ss_dssp             ---HHHTTCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred             ---HHccCCEEEEEeCcch-HHHHHHHHhhhcC
Confidence               3446999999999987 5678898877653

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.90  E-value=1.4e-24  Score=214.69  Aligned_cols=178  Identities=17%  Similarity=0.230  Sum_probs=130.7

Q ss_pred             CCCCcHHHHHHHHhCC---------CCCCeeEEEEcceeCCC----ChHHhhcceEEEccCCCCCC----CCCHHHHHHH
Q psy7367          35 HNGAGKTTTISMLMGM---------LPVSSGTAKIYNHDIRT----DMTTIRRSLGVCPQYNALFD----KLTVEEHMWF   97 (251)
Q Consensus        35 ~NGaGKSTLlk~l~Gl---------~~p~~G~i~~~g~~~~~----~~~~~~~~i~~v~q~~~l~~----~ltv~e~l~~   97 (251)
                      .+..||+|+.+.+...         +.|.+|+|.++|+++..    ...+...-+.-+||++....    .++. ++...
T Consensus       270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i  348 (842)
T 2vf7_A          270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAERVKNRP-EQAIA  348 (842)
T ss_dssp             CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCSTTSSSSCS-SHHHH
T ss_pred             cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcccchhhcch-hhHHH
Confidence            3556899999988874         34567899999988742    11122211222233221100    1111 11111


Q ss_pred             HHHhcCCChHHHHHHHHHHHHHcCCCcc-cCCCCCcCChhHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHH
Q psy7367          98 YSQLKQVPKDLAQLEISNMIVDLGIPHK-RTSLANTLSGGMQRKLSVAMAFIGGS--RTVILDEPTSGVDPYSRRSIWEL  174 (251)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~kqrv~ia~al~~~p--~llllDEPt~gLD~~~~~~l~~~  174 (251)
                      ...+    ..+..++++ .+..+||... +++++.+|||||||||+||++|+.+|  .+|||||||++||+..++.++++
T Consensus       349 ~~~i----~~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~  423 (842)
T 2vf7_A          349 LQRM----AADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSA  423 (842)
T ss_dssp             HHHH----HHHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHH
T ss_pred             HHHH----HHHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHH
Confidence            1111    234556665 6889999865 79999999999999999999999999  59999999999999999999999


Q ss_pred             HHhhhC-CCeEEEEeCCHHHHHhhcCEEEEe------eCCEEEeecCHHHHH
Q psy7367         175 LIKYKK-GRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVFLK  219 (251)
Q Consensus       175 l~~l~~-g~tiii~tHd~~~~~~~~d~i~~l------~~G~i~~~g~~~~~~  219 (251)
                      |+++++ |.|||+||||++.+. .||+|++|      ++|++++.|+++++.
T Consensus       424 l~~L~~~G~TVIvVeHdl~~l~-~aD~ii~lgpgaG~~~G~iv~~g~~~~~~  474 (842)
T 2vf7_A          424 LENLKRGGNSLFVVEHDLDVIR-RADWLVDVGPEAGEKGGEILYSGPPEGLK  474 (842)
T ss_dssp             HHHHHTTTCEEEEECCCHHHHT-TCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred             HHHHHHcCCEEEEEcCCHHHHH-hCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence            999964 999999999999765 79999999      799999999987653

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.90  E-value=2.3e-24  Score=215.40  Aligned_cols=148  Identities=17%  Similarity=0.254  Sum_probs=108.6

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHH--------hCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCC
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISML--------MGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNAL   85 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l--------~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l   85 (251)
                      +.+++|++|++++|++++|+||||||||||||++        +|...|.++..                 ++++.     
T Consensus       649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-----------------~~~~d-----  706 (934)
T 3thx_A          649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-----------------VSIVD-----  706 (934)
T ss_dssp             CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-----------------EECCS-----
T ss_pred             eeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-----------------chHHH-----
Confidence            4688899999999999999999999999999999        66555543321                 11000     


Q ss_pred             CCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHH--ccCCCEEEEeCCCCCC
Q psy7367          86 FDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF--IGGSRTVILDEPTSGV  163 (251)
Q Consensus        86 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al--~~~p~llllDEPt~gL  163 (251)
                                                   .++.++|+.+.   ....+|++++++..+|+++  +.+|+++||||||+|+
T Consensus       707 -----------------------------~i~~~ig~~d~---l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~Gl  754 (934)
T 3thx_A          707 -----------------------------CILARVGAGDS---QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGT  754 (934)
T ss_dssp             -----------------------------EEEEECC------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSS
T ss_pred             -----------------------------HHHHhcCchhh---HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCC
Confidence                                         01112222221   2345778888777888877  9999999999999999


Q ss_pred             CHHHHHHH-HHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHH
Q psy7367         164 DPYSRRSI-WELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  216 (251)
Q Consensus       164 D~~~~~~l-~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~  216 (251)
                      |+.....+ +.++..+. + |+++|++||+.+.+ .+||++..+.+|++...++++
T Consensus       755 D~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~~~~~~~  809 (934)
T 3thx_A          755 STYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVTALTTEE  809 (934)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEEEEEETT
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEEEEecCC
Confidence            99999888 66777774 3 89999999997655 689999999999998766543

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.90  E-value=2.3e-23  Score=192.75  Aligned_cols=77  Identities=18%  Similarity=0.148  Sum_probs=69.2

Q ss_pred             CCCCcCChhHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEE
Q psy7367         128 SLANTLSGGMQRKLSVAMAFI----GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIA  202 (251)
Q Consensus       128 ~~~~~LSgG~kqrv~ia~al~----~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~  202 (251)
                      +++..||||||||++||++|+    .+|+++||||||++||+..+..+.++|+++. ++.++|++||+...+ ..||+++
T Consensus       329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~  407 (430)
T 1w1w_A          329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV  407 (430)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred             cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence            345679999999999999999    5899999999999999999999999999985 489999999997654 5799999


Q ss_pred             Eee
Q psy7367         203 IIA  205 (251)
Q Consensus       203 ~l~  205 (251)
                      .|.
T Consensus       408 ~~~  410 (430)
T 1w1w_A          408 GVY  410 (430)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            886

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.90  E-value=1.6e-25  Score=188.53  Aligned_cols=147  Identities=16%  Similarity=0.099  Sum_probs=99.4

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-------CeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHH
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMGMLPV-------SSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHM   95 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-------~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l   95 (251)
                      .|++|++++|+||||||||||+++|+|+..|       ..|.+++++++...     .+++++++|...+++. |+.||+
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~-----~~~i~~~~~~~~~~~~-~~~~~~   94 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR-----PERIREIAQNRGLDPD-EVLKHI   94 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC-----HHHHHHHHHHTTSCHH-HHHHTE
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC-----HHHHHHHHHHcCCCHH-HHhhcE
Confidence            7999999999999999999999999996554       44577887765311     1245666777666554 666665


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhH-HHHHHHHHHH-------ccCCCEEEEeCCCCCCCHH-
Q psy7367          96 WFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGM-QRKLSVAMAF-------IGGSRTVILDEPTSGVDPY-  166 (251)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~-kqrv~ia~al-------~~~p~llllDEPt~gLD~~-  166 (251)
                      .+...                                ++.++ ++.+..++++       ..+|+++++||||+++|+. 
T Consensus        95 ~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~  142 (231)
T 4a74_A           95 YVARA--------------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEY  142 (231)
T ss_dssp             EEEEC--------------------------------CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHS
T ss_pred             EEEec--------------------------------CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhcccc
Confidence            43211                                11111 1222333333       3599999999999999984 


Q ss_pred             ------H-----HHHHHHHHHhh-hC-CCeEEEEeCCH----HHHHhhcCEEEEeeCC
Q psy7367         167 ------S-----RRSIWELLIKY-KK-GRTVILTTHYM----DEADLLGDRIAIIAAG  207 (251)
Q Consensus       167 ------~-----~~~l~~~l~~l-~~-g~tiii~tHd~----~~~~~~~d~i~~l~~G  207 (251)
                            .     ...+++.|.++ ++ |+|||++||++    ..+..+||++++|++|
T Consensus       143 ~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~  200 (231)
T 4a74_A          143 IGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG  200 (231)
T ss_dssp             CSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence                  2     23677777776 33 99999999954    4499999999999875

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.89  E-value=7.1e-25  Score=215.49  Aligned_cols=144  Identities=19%  Similarity=0.234  Sum_probs=110.3

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-CCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-VSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE   92 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~   92 (251)
                      +.+++|+||+   |++++|+||||||||||||+|+|+.. |+.|.+.      .    ..+..+++++|   +|+.+++.
T Consensus       566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------p----a~~~~i~~v~~---i~~~~~~~  629 (765)
T 1ewq_A          566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------P----AEEAHLPLFDG---IYTRIGAS  629 (765)
T ss_dssp             CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------S----SSEEEECCCSE---EEEECCC-
T ss_pred             ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------e----hhccceeeHHH---hhccCCHH
Confidence            5688999999   99999999999999999999999874 6777642      1    12346888876   56667887


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHH--ccCCCEEEEeCC---CCCCCHHH
Q psy7367          93 EHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF--IGGSRTVILDEP---TSGVDPYS  167 (251)
Q Consensus        93 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al--~~~p~llllDEP---t~gLD~~~  167 (251)
                      ||+..                                  .+|+||+|++.+|+++  +.+|+++|||||   |++||+.+
T Consensus       630 d~l~~----------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~  675 (765)
T 1ewq_A          630 DDLAG----------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVA  675 (765)
T ss_dssp             ---------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHH
T ss_pred             HHHHh----------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHH
Confidence            77643                                  2588999999999999  999999999999   99999988


Q ss_pred             H-HHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEee
Q psy7367         168 R-RSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC  212 (251)
Q Consensus       168 ~-~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~  212 (251)
                      . ..+++.|.+  .|.++|++||+.+.+. +|  .-.+.++.+...
T Consensus       676 ~~~~i~~~L~~--~g~~vl~~TH~~~l~~-~~--~~~v~n~~~~~~  716 (765)
T 1ewq_A          676 IATAVAEALHE--RRAYTLFATHYFELTA-LG--LPRLKNLHVAAR  716 (765)
T ss_dssp             HHHHHHHHHHH--HTCEEEEECCCHHHHT-CC--CTTEEEEEEEEE
T ss_pred             HHHHHHHHHHh--CCCEEEEEeCCHHHHH-hh--hhcceEEEEEEE
Confidence            6 468888776  5899999999988764 55  223445555444

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.89  E-value=4.7e-23  Score=164.81  Aligned_cols=83  Identities=31%  Similarity=0.400  Sum_probs=75.0

Q ss_pred             cCCCCCcCChhHHHHHHHH------HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhc
Q psy7367         126 RTSLANTLSGGMQRKLSVA------MAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLG  198 (251)
Q Consensus       126 ~~~~~~~LSgG~kqrv~ia------~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~  198 (251)
                      .++++.+||||||||++||      |||+.+|+++||||||+|||+.++..+.+.+.++. +|.|||++|||+ ++..+|
T Consensus        51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~  129 (148)
T 1f2t_B           51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAA  129 (148)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGC
T ss_pred             ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhC
Confidence            4678999999999999876      89999999999999999999999999999999985 589999999999 567899


Q ss_pred             CEEEEe--eCCEE
Q psy7367         199 DRIAII--AAGKL  209 (251)
Q Consensus       199 d~i~~l--~~G~i  209 (251)
                      |++++|  .+|..
T Consensus       130 d~ii~l~~~~g~s  142 (148)
T 1f2t_B          130 DHVIRISLENGSS  142 (148)
T ss_dssp             SEEEEEEEETTEE
T ss_pred             CEEEEEEcCCCeE
Confidence            999999  45643

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.89  E-value=3.8e-26  Score=220.14  Aligned_cols=185  Identities=15%  Similarity=0.200  Sum_probs=121.4

Q ss_pred             EEEeEEEEeCCC-cceeeee----------eEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CeeEEEEcceeCCC--
Q psy7367           2 AIQNLSKRFPNG-KLAVNGL----------NVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-SSGTAKIYNHDIRT--   67 (251)
Q Consensus         2 ~i~~l~~~y~~~-~~il~~i----------sl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-~~G~i~~~g~~~~~--   67 (251)
                      +++|+++.|+.. +++|+.+          +++++.   ++|+|||||||||||++|+|+..| ++|.|+++|.++..  
T Consensus        12 ~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~   88 (608)
T 3szr_A           12 AENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKK   88 (608)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEE
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEec
Confidence            578899999531 2345444          366665   999999999999999999999988 79999999998621  


Q ss_pred             --ChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHH
Q psy7367          68 --DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAM  145 (251)
Q Consensus        68 --~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~  145 (251)
                        ....+++.++|+||++.+++.+||.+|+.+.....+...             -++.              ++++.++.
T Consensus        89 ~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~-------------~~~s--------------~~~i~l~i  141 (608)
T 3szr_A           89 LVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG-------------MGIS--------------HELITLEI  141 (608)
T ss_dssp             CSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS-------------SCCC--------------SCCEEEEE
T ss_pred             CCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc-------------cccc--------------hHHHHHHh
Confidence              123567889999999999999999999987543211000             0111              12233334


Q ss_pred             HHccCCCEEEEeCC------CCCCCHHHHHHHHHHHHhh-hC--CCeEEEEeCCHHH--------HHhh----cCEEEEe
Q psy7367         146 AFIGGSRTVILDEP------TSGVDPYSRRSIWELLIKY-KK--GRTVILTTHYMDE--------ADLL----GDRIAII  204 (251)
Q Consensus       146 al~~~p~llllDEP------t~gLD~~~~~~l~~~l~~l-~~--g~tiii~tHd~~~--------~~~~----~d~i~~l  204 (251)
                      +....|+++|+|||      |+|||+..+..+.++++++ ++  +.+++++||+++.        +..+    +..|+++
T Consensus       142 ~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~Vl  221 (608)
T 3szr_A          142 SSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGIL  221 (608)
T ss_dssp             EESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEE
T ss_pred             cCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEe
Confidence            44568999999999      9999999999999999996 43  7899999999763        2222    3568899


Q ss_pred             eCCEEEeecCHH
Q psy7367         205 AAGKLQCCGSSV  216 (251)
Q Consensus       205 ~~G~i~~~g~~~  216 (251)
                      .++.++..|+..
T Consensus       222 TK~Dlv~~g~~~  233 (608)
T 3szr_A          222 TKPDLVDKGTED  233 (608)
T ss_dssp             ECGGGSSSSSTT
T ss_pred             cchhhcCcccHH
Confidence            888887777653

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.89  E-value=9.6e-27  Score=194.66  Aligned_cols=144  Identities=15%  Similarity=0.058  Sum_probs=118.4

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCC--CCCCHHHHHHHHHHh
Q psy7367          24 FYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALF--DKLTVEEHMWFYSQL  101 (251)
Q Consensus        24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~--~~ltv~e~l~~~~~~  101 (251)
                      .++|+++||+||||||||||+++|+|++.|                     .++|++|++.++  ..+|+.++..+..  
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~--   59 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY--   59 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence            578999999999999999999999998765                     489999998776  5679988876532  


Q ss_pred             cCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHH----HHHHHHHHHccCCCEEEEeCCCCC-------CCHHHHHH
Q psy7367         102 KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQ----RKLSVAMAFIGGSRTVILDEPTSG-------VDPYSRRS  170 (251)
Q Consensus       102 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~k----qrv~ia~al~~~p~llllDEPt~g-------LD~~~~~~  170 (251)
                       +.+.....+++.++++.+++.+..++++.++|+||+    ||+++|++++.+|+++++||||++       ||+.....
T Consensus        60 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~  138 (211)
T 3asz_A           60 -DHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADER  138 (211)
T ss_dssp             -TSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHH
T ss_pred             -CChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHH
Confidence             111222234577788888888777778999999974    788999999999999999999999       99999999


Q ss_pred             HHHHHHhh-h-CCCeEEEEeCCH
Q psy7367         171 IWELLIKY-K-KGRTVILTTHYM  191 (251)
Q Consensus       171 l~~~l~~l-~-~g~tiii~tHd~  191 (251)
                      +.+.+.+. + +|.|+++++|+.
T Consensus       139 ~~r~l~r~~~~~g~t~~~~~~~~  161 (211)
T 3asz_A          139 FIRRLKRDVLERGRSLEGVVAQY  161 (211)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHH
Confidence            99998875 3 589999999985

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.89  E-value=6.4e-24  Score=211.80  Aligned_cols=153  Identities=14%  Similarity=0.158  Sum_probs=103.5

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHH
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEE   93 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e   93 (251)
                      +.+++|+||++++|++++|+||||||||||||+++++....                   +.-.++|.....++.     
T Consensus       660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-------------------q~g~~vpa~~~~i~~-----  715 (918)
T 3thx_B          660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-------------------QIGSYVPAEEATIGI-----  715 (918)
T ss_dssp             SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-------------------HHTCCBSSSEEEEEC-----
T ss_pred             ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-------------------hcCccccchhhhhhH-----
Confidence            56899999999999999999999999999999998642110                   000122221100000     


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH-
Q psy7367          94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW-  172 (251)
Q Consensus        94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~-  172 (251)
                                         ++.++..+++.+...+..+.+|+||+|++.|+++ +.+|+++||||||+|||+.....+. 
T Consensus       716 -------------------~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~  775 (918)
T 3thx_B          716 -------------------VDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAY  775 (918)
T ss_dssp             -------------------CSEEEEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHH
T ss_pred             -------------------HHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHH
Confidence                               0011223344444455678899999999999999 8999999999999999999999987 


Q ss_pred             HHHHhh-h-CCCeEEEEeCCHHHHHhhcCEEEE-eeCCEEEe
Q psy7367         173 ELLIKY-K-KGRTVILTTHYMDEADLLGDRIAI-IAAGKLQC  211 (251)
Q Consensus       173 ~~l~~l-~-~g~tiii~tHd~~~~~~~~d~i~~-l~~G~i~~  211 (251)
                      .++..+ + .|+|||++||+++.+ .+||+.-- +.++.+.+
T Consensus       776 ~il~~L~~~~g~tvl~vTH~~el~-~l~~~~~~~v~n~~~~~  816 (918)
T 3thx_B          776 ATLEYFIRDVKSLTLFVTHYPPVC-ELEKNYSHQVGNYHMGF  816 (918)
T ss_dssp             HHHHHHHHTTCCEEEEECSCGGGG-GHHHHTTTTEEEEEEEE
T ss_pred             HHHHHHHHhcCCeEEEEeCcHHHH-HHHhhcccceEEEEEEE
Confidence            677776 4 499999999998776 46765421 34444433

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.88  E-value=8.8e-25  Score=194.16  Aligned_cols=150  Identities=19%  Similarity=0.133  Sum_probs=109.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh-----HHh--hcceEEEccCCCCCCCCCHHHHHHHH
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM-----TTI--RRSLGVCPQYNALFDKLTVEEHMWFY   98 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~-----~~~--~~~i~~v~q~~~l~~~ltv~e~l~~~   98 (251)
                      +|++++|+||||||||||+++|+|+++|++|+|.+.|.++....     ..+  +..++|++|++.++|.+++++|+.+.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~  180 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM  180 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999974311     122  35799999999988889999999865


Q ss_pred             HHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q psy7367          99 SQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY  178 (251)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l  178 (251)
                      ... +..        ..+++..|+.+...+.+.+|   ++||++||||++.+|+.++|     .||+.+...+++.++++
T Consensus       181 ~~~-~~d--------~~llDt~G~~~~~~~~~~eL---s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~  243 (304)
T 1rj9_A          181 KAR-GYD--------LLFVDTAGRLHTKHNLMEEL---KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKF  243 (304)
T ss_dssp             HHH-TCS--------EEEECCCCCCTTCHHHHHHH---HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHH
T ss_pred             HhC-CCC--------EEEecCCCCCCchHHHHHHH---HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHH
Confidence            321 110        01233344433333334444   48999999999999994444     44555455566777776


Q ss_pred             h-C-CCeEEEEeCCHH
Q psy7367         179 K-K-GRTVILTTHYMD  192 (251)
Q Consensus       179 ~-~-g~tiii~tHd~~  192 (251)
                      . . +.|+|++||+.+
T Consensus       244 ~~~~~~t~iivTh~d~  259 (304)
T 1rj9_A          244 HEAVGLTGVIVTKLDG  259 (304)
T ss_dssp             HHHHCCSEEEEECTTS
T ss_pred             HHHcCCcEEEEECCcc
Confidence            4 3 899999999853

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.88  E-value=3.2e-24  Score=180.31  Aligned_cols=170  Identities=14%  Similarity=0.068  Sum_probs=119.4

Q ss_pred             CcceeeeeeE-EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-hHHhhcceEEEccCCCCCCCCC
Q psy7367          13 GKLAVNGLNV-NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MTTIRRSLGVCPQYNALFDKLT   90 (251)
Q Consensus        13 ~~~il~~isl-~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~l~~~lt   90 (251)
                      +.+.|+++.. .+++|++++|+||||||||||++.|++...+++|.|.+.+.+.... .......+++.+|..... .+.
T Consensus         8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   86 (235)
T 2w0m_A            8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLI   86 (235)
T ss_dssp             SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEE
T ss_pred             CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEE
Confidence            3568999998 8999999999999999999999999998888888888876554211 111112344444332110 110


Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC--EEEEeCCCCCC--CHH
Q psy7367          91 VEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR--TVILDEPTSGV--DPY  166 (251)
Q Consensus        91 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~--llllDEPt~gL--D~~  166 (251)
                      +         ......            .++ ....   ....|.++.++...+.+...+|+  ++++||||+++  |+.
T Consensus        87 ~---------~~~~~~------------~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~  141 (235)
T 2w0m_A           87 I---------IDALMK------------EKE-DQWS---LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPA  141 (235)
T ss_dssp             E---------EECCC-----------------CTTB---CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGG
T ss_pred             E---------Eecccc------------ccC-ceee---ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHH
Confidence            0         000000            001 1111   22349999998888888888999  99999999887  999


Q ss_pred             HHHHHHHHHHhhh--CCCeEEEEeCCH--------HHHHhhcCEEEEeeCCE
Q psy7367         167 SRRSIWELLIKYK--KGRTVILTTHYM--------DEADLLGDRIAIIAAGK  208 (251)
Q Consensus       167 ~~~~l~~~l~~l~--~g~tiii~tHd~--------~~~~~~~d~i~~l~~G~  208 (251)
                      .+..+++.|+++.  .|.|||++||+.        ..++.+||++++|+...
T Consensus       142 ~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~  193 (235)
T 2w0m_A          142 MARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI  193 (235)
T ss_dssp             GHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence            9999999999873  499999999999        55899999999998653

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.86  E-value=5.5e-25  Score=182.81  Aligned_cols=158  Identities=17%  Similarity=0.061  Sum_probs=108.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCh
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK  106 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~  106 (251)
                      |++++|+||||||||||+++|+|+++ ++| |.++|.+... ...+++.+||++|+.  ....   +++   .++. ...
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~-~~~~~~~ig~~~~~~--~g~~---~~l---~~~~-~~~   68 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEE-VRQGGRRIGFDVVTL--SGTR---GPL---SRVG-LEP   68 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCE-EETTSSEEEEEEEET--TSCE---EEE---EECC-CCC
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecch-hHhhhceEEEEEEec--ccce---ehh---hccc-ccC
Confidence            78999999999999999999999999 999 9999988742 234578899999985  1111   111   1110 000


Q ss_pred             HHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHH-HHHH---HHccCCCEEEEeC--CCCCCCHHHHHHHHHHHHhhhC
Q psy7367         107 DLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKL-SVAM---AFIGGSRTVILDE--PTSGVDPYSRRSIWELLIKYKK  180 (251)
Q Consensus       107 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv-~ia~---al~~~p~llllDE--Pt~gLD~~~~~~l~~~l~~l~~  180 (251)
                      .           .....+...++...+|+|||+++ ++++   |++.+|+++|+||  |+..+|+...+.+.+++..   
T Consensus        69 ~-----------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---  134 (189)
T 2i3b_A           69 P-----------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---  134 (189)
T ss_dssp             C-----------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---
T ss_pred             C-----------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC---
Confidence            0           00011234556668999999988 4454   6899999999999  8999999876666666653   


Q ss_pred             CCeEE----EEeCCHHHHHhhcCEEEEeeCCEEEee
Q psy7367         181 GRTVI----LTTHYMDEADLLGDRIAIIAAGKLQCC  212 (251)
Q Consensus       181 g~tii----i~tHd~~~~~~~~d~i~~l~~G~i~~~  212 (251)
                      ..++|    .+||+.+  ..++|+|..+.+|+++..
T Consensus       135 ~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~  168 (189)
T 2i3b_A          135 PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNV  168 (189)
T ss_dssp             SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEEC
T ss_pred             CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEe
Confidence            33444    3449863  234455555678888754

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.86  E-value=2.3e-23  Score=205.78  Aligned_cols=153  Identities=18%  Similarity=0.244  Sum_probs=108.4

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-SSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE   92 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~   92 (251)
                      +.+++|+||+ ++|++++|+||||||||||||+|+|+..+ ..|      ..+..    .+..+++++|   +|..+++.
T Consensus       595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa----~~~~i~~~~~---i~~~~~~~  660 (800)
T 1wb9_A          595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA----QKVEIGPIDR---IFTRVGAA  660 (800)
T ss_dssp             CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS----SEEEECCCCE---EEEEEC--
T ss_pred             ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch----hcccceeHHH---HHhhCCHH
Confidence            5689999999 99999999999999999999999997432 122      11111    1234666655   45566666


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH-
Q psy7367          93 EHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI-  171 (251)
Q Consensus        93 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l-  171 (251)
                      |++...                               .+.+|++|++ ++.+...+.+|+++|||||++|+|+.....+ 
T Consensus       661 d~l~~~-------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~  708 (800)
T 1wb9_A          661 DDLASG-------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLA  708 (800)
T ss_dssp             ----------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHH
T ss_pred             HHHHhh-------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHH
Confidence            665321                               1245666664 4445556999999999999999999887775 


Q ss_pred             HHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367         172 WELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG  213 (251)
Q Consensus       172 ~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g  213 (251)
                      +.++..+. + |.++|++||+.+.+ .+||++..+.+|++....
T Consensus       709 ~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~n~~~~~~~  751 (800)
T 1wb9_A          709 WACAENLANKIKALTLFATHYFELT-QLPEKMEGVANVHLDALE  751 (800)
T ss_dssp             HHHHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEEEEEEEEEE
T ss_pred             HHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceEEEEEEEEE
Confidence            67888774 3 89999999999776 589998888888876553

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.86  E-value=6.9e-24  Score=191.75  Aligned_cols=164  Identities=18%  Similarity=0.127  Sum_probs=109.5

Q ss_pred             cceeeee-eEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCe----eE-EEEcceeCCCChHHhhcceEEEccCCCC
Q psy7367          14 KLAVNGL-NVNFYEDQITSFLGHNGAGKTTTISMLMGML--PVSS----GT-AKIYNHDIRTDMTTIRRSLGVCPQYNAL   85 (251)
Q Consensus        14 ~~il~~i-sl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~--~p~~----G~-i~~~g~~~~~~~~~~~~~i~~v~q~~~l   85 (251)
                      ...|+.+ ++.|++|++++|+||||||||||++.+++..  +|++    |+ |++++++..     .++++++++|.+.+
T Consensus       117 ~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-----~~~~i~~i~q~~~~  191 (349)
T 1pzn_A          117 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-----RPERIREIAQNRGL  191 (349)
T ss_dssp             CHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-----CHHHHHHHHHTTTC
T ss_pred             CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-----CHHHHHHHHHHcCC
Confidence            3456666 6899999999999999999999999999988  6776    68 889887642     13457788888776


Q ss_pred             CCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc-------cCCCEEEEeC
Q psy7367          86 FDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI-------GGSRTVILDE  158 (251)
Q Consensus        86 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~-------~~p~llllDE  158 (251)
                      ++. ++.+|+.+...   ..                            |.+++|++.++++++       .+|+++|+||
T Consensus       192 ~~~-~v~~ni~~~~~---~~----------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs  239 (349)
T 1pzn_A          192 DPD-EVLKHIYVARA---FN----------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDS  239 (349)
T ss_dssp             CHH-HHGGGEEEEEC---CS----------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEET
T ss_pred             CHH-HHhhCEEEEec---CC----------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEEeC
Confidence            654 66666543211   00                            344555666666655       7899999999


Q ss_pred             CCCCCCHHH------------HHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367         159 PTSGVDPYS------------RRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS  214 (251)
Q Consensus       159 Pt~gLD~~~------------~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~  214 (251)
                      ||+++|+..            ...++..|.++.  .++|||+++|........++.......|+++..+.
T Consensus       240 ~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~  309 (349)
T 1pzn_A          240 LTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA  309 (349)
T ss_dssp             SSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTC
T ss_pred             chHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence            999999862            355666666653  48999999999876654444455566676655443

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.86  E-value=8.4e-24  Score=195.21  Aligned_cols=163  Identities=17%  Similarity=0.164  Sum_probs=101.4

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |.++||+++|+ ++.+++++||+|      +|+||||||||||+++|+|+..|+.|   .+|..+..........+++++
T Consensus        12 l~~~~l~~~y~-~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~t~~~~~i~~v~   81 (418)
T 2qag_C           12 VGFANLPNQVY-RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKKTVQVEQSKVLI   81 (418)
T ss_dssp             ---CCCCCCTT-TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC-----CCEEEEEECC-
T ss_pred             EEEEecceeEC-CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCccceeeeeEEEEE
Confidence            46789999996 478999999998      99999999999999999999886655   123222111111235689999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC---EEEEe
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR---TVILD  157 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~---llllD  157 (251)
                      |.+.+++.+|++|++.++.....   ......+.+.++            ..++.+++||++||||++.+|+   ++++|
T Consensus        82 q~~~~~~~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ld  146 (418)
T 2qag_C           82 KEGGVQLLLTIVDTPGFGDAVDN---SNCWQPVIDYID------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFI  146 (418)
T ss_dssp             -----CEEEEEEECC--------------CHHHHHHHH------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEEC
T ss_pred             ecCCcccceeeeechhhhhhccc---hhhHHHHHHHHH------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEe
Confidence            99888888999999987543221   111112222222            1455677889999999999999   99999


Q ss_pred             CCC-CCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHH
Q psy7367         158 EPT-SGVDPYSRRSIWELLIKYKKGRTVILTTHYMD  192 (251)
Q Consensus       158 EPt-~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~  192 (251)
                      ||| ++||+...    ++++.+..+.+||+|.|..+
T Consensus       147 ePt~~~L~~~d~----~~lk~L~~~v~iIlVinK~D  178 (418)
T 2qag_C          147 APSGHGLKPLDI----EFMKRLHEKVNIIPLIAKAD  178 (418)
T ss_dssp             CC-CCSCCHHHH----HHHHHHTTTSEEEEEEESTT
T ss_pred             cCcccCCCHHHH----HHHHHHhccCcEEEEEEccc
Confidence            999 69999874    44455555777777777544

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.86  E-value=5.2e-24  Score=176.96  Aligned_cols=168  Identities=13%  Similarity=0.067  Sum_probs=102.8

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC-----CCCeeEEEEcceeCCCChHHhhcc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML-----PVSSGTAKIYNHDIRTDMTTIRRS   75 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~-----~p~~G~i~~~g~~~~~~~~~~~~~   75 (251)
                      |+++|+++.|+  ..++++  |++++|..++|+|+||||||||++.|+|..     .|+.|.+.+.+.-...      ..
T Consensus         4 l~~~~~~~~~~--~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~------~~   73 (210)
T 1pui_A            4 LNYQQTHFVMS--APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA------DG   73 (210)
T ss_dssp             -------CEEE--ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE------TT
T ss_pred             hhhhhhhheee--cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEec------CC
Confidence            57899999995  467888  999999999999999999999999999998     7888877653311000      00


Q ss_pred             eEEEccCCCCCC----CCC---HHHHHHHHHHh----------c--CCChHHHHHHHHHHHHHcCCCcc-cCCCCCcCCh
Q psy7367          76 LGVCPQYNALFD----KLT---VEEHMWFYSQL----------K--QVPKDLAQLEISNMIVDLGIPHK-RTSLANTLSG  135 (251)
Q Consensus        76 i~~v~q~~~l~~----~lt---v~e~l~~~~~~----------~--~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSg  135 (251)
                      +- +.+.+.+..    ...   ....+..+...          .  ..........+.+++...++... ...++..+|+
T Consensus        74 ~~-l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~  152 (210)
T 1pui_A           74 KR-LVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLAS  152 (210)
T ss_dssp             EE-EEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCH
T ss_pred             EE-EEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCc
Confidence            11 111111110    000   11112111110          0  00111222345566777888754 3567889999


Q ss_pred             hHHHH-HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh
Q psy7367         136 GMQRK-LSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK  179 (251)
Q Consensus       136 G~kqr-v~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~  179 (251)
                      ||+|| +..+++++.+|+++++|||||++|+.+...+++.|.++.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~  197 (210)
T 1pui_A          153 GARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF  197 (210)
T ss_dssp             HHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence            99999 899999999999999999999999999999999998864

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.85  E-value=1.2e-23  Score=178.49  Aligned_cols=144  Identities=16%  Similarity=0.184  Sum_probs=104.4

Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCH----HHH
Q psy7367          21 NVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV--SSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTV----EEH   94 (251)
Q Consensus        21 sl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv----~e~   94 (251)
                      .-..++|++++|+||||||||||+++|+|+.+|  .+|.|.+.+++...   ..+..++|+||++.+|+.+++    .||
T Consensus        10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~---~e~~gi~y~fq~~~~f~~~~~~~~f~E~   86 (219)
T 1s96_A           10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP---GEVHGEHYFFVNHDEFKEMISRDAFLEH   86 (219)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT---TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred             cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc---ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence            446789999999999999999999999999986  78999998876532   234679999999877776666    455


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy7367          95 MWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL  174 (251)
Q Consensus        95 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~  174 (251)
                      +.++..+++.+.    +.++++                               +..++++|||     ||+.++..+++.
T Consensus        87 ~~~~~~~yg~~~----~~v~~~-------------------------------l~~G~illLD-----LD~~~~~~i~~~  126 (219)
T 1s96_A           87 AEVFGNYYGTSR----EAIEQV-------------------------------LATGVDVFLD-----IDWQGAQQIRQK  126 (219)
T ss_dssp             EEETTEEEEEEH----HHHHHH-------------------------------HTTTCEEEEE-----CCHHHHHHHHHH
T ss_pred             HHHHhccCCCCH----HHHHHH-------------------------------HhcCCeEEEE-----ECHHHHHHHHHH
Confidence            444332232221    112222                               2347999999     999999999998


Q ss_pred             HHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         175 LIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       175 l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +.   ++.||+++||+++++.+   |+  +.+|    .++++.+.
T Consensus       127 l~---~~~tI~i~th~~~~l~~---Rl--~~rG----~~~~e~i~  159 (219)
T 1s96_A          127 MP---HARSIFILPPSKIELDR---RL--RGRG----QDSEEVIA  159 (219)
T ss_dssp             CT---TCEEEEEECSSHHHHHH---HH--HTTS----CSCHHHHH
T ss_pred             cc---CCEEEEEECCCHHHHHH---HH--HHcC----CCCHHHHH
Confidence            76   58999999999999876   33  6777    56766554

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.85  E-value=1.9e-22  Score=182.65  Aligned_cols=145  Identities=18%  Similarity=0.137  Sum_probs=104.2

Q ss_pred             eEEEEeC-CCcceeeeeeE-------EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-eeEEEEcceeCCCChHHhhcc
Q psy7367           5 NLSKRFP-NGKLAVNGLNV-------NFYEDQITSFLGHNGAGKTTTISMLMGMLPVS-SGTAKIYNHDIRTDMTTIRRS   75 (251)
Q Consensus         5 ~l~~~y~-~~~~il~~isl-------~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~   75 (251)
                      .++++|- ...+.|+++.+       ...+|++++|+|||||||||||++|+|+++|+ +|.|...+.++...   .+..
T Consensus        93 ~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~---~~~~  169 (356)
T 3jvv_A           93 GAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFV---HESK  169 (356)
T ss_dssp             EEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSC---CCCS
T ss_pred             EEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhh---hhcc
Confidence            4555652 22456677766       77889999999999999999999999999987 56665544444321   1234


Q ss_pred             eEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367          76 LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI  155 (251)
Q Consensus        76 i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll  155 (251)
                      .++++|.......++..+                                                +||+||.++|++|+
T Consensus       170 ~~~v~q~~~~~~~~~~~~------------------------------------------------~La~aL~~~Pdvil  201 (356)
T 3jvv_A          170 KCLVNQREVHRDTLGFSE------------------------------------------------ALRSALREDPDIIL  201 (356)
T ss_dssp             SSEEEEEEBTTTBSCHHH------------------------------------------------HHHHHTTSCCSEEE
T ss_pred             ccceeeeeeccccCCHHH------------------------------------------------HHHHHhhhCcCEEe
Confidence            456666543333333322                                                99999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCC
Q psy7367         156 LDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAG  207 (251)
Q Consensus       156 lDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G  207 (251)
                      +||||   |+...+.+.+.   ...|.+|++++|+.+.+ ..|||++.|..|
T Consensus       202 lDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~-~~~dRli~l~~~  246 (356)
T 3jvv_A          202 VGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAA-KTIDRVVDVFPA  246 (356)
T ss_dssp             ESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred             cCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHH-HHHHHHhhhcCc
Confidence            99999   66554433332   24599999999999988 679999988554

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.83  E-value=1e-20  Score=165.24  Aligned_cols=153  Identities=14%  Similarity=0.127  Sum_probs=106.9

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK  102 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~  102 (251)
                      .+++|++++|+||||||||||++.+++...  .|.++ .|.+...     ...+.|+..+...   ..+.+.+.-.  -.
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~-----~~~v~~~~~e~~~---~~~~~r~~~~--g~   92 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP-----TGPVIYLPAEDPP---TAIHHRLHAL--GA   92 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC-----CCCEEEEESSSCH---HHHHHHHHHH--HT
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC-----CccEEEEECCCCH---HHHHHHHHHH--Hh
Confidence            589999999999999999999999998654  46653 3544321     2357777654321   0111122110  11


Q ss_pred             CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCC--CCCHHHH---HHHHHHHHh
Q psy7367         103 QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTS--GVDPYSR---RSIWELLIK  177 (251)
Q Consensus       103 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~--gLD~~~~---~~l~~~l~~  177 (251)
                      ....    ....++++.+.+.+..++++..||+||+|++   ++++.+|+++++||||+  ++|+...   ..+++.|.+
T Consensus        93 ~~~~----~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~  165 (279)
T 1nlf_A           93 HLSA----EERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEA  165 (279)
T ss_dssp             TSCH----HHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHH
T ss_pred             hcCh----hhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHH
Confidence            1221    2355678888988888889999999998765   68888999999999999  9998544   788888888


Q ss_pred             hh-C-CCeEEEEeCCHHHHH
Q psy7367         178 YK-K-GRTVILTTHYMDEAD  195 (251)
Q Consensus       178 l~-~-g~tiii~tHd~~~~~  195 (251)
                      +. + |+|||+++|+.....
T Consensus       166 l~~~~g~tvi~i~H~~~~~~  185 (279)
T 1nlf_A          166 IAADTGCSIVFLHHASKGAA  185 (279)
T ss_dssp             HHHHHCCEEEEEEEC-----
T ss_pred             HHHHcCCEEEEEecCCCccc
Confidence            73 3 999999999987764

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.81  E-value=4.5e-22  Score=183.57  Aligned_cols=176  Identities=11%  Similarity=0.032  Sum_probs=116.8

Q ss_pred             EEEeEEEEeCCCcceeeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           2 AIQNLSKRFPNGKLAVNGLNVNFYEDQI--TSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~--~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      ++++ ++.|++ .+ |+++||++++|++  ++|+||||||||||+|+|+|+.        ++|.++.. .....++.++|
T Consensus        18 ~~~~-~~~y~~-~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i~~   86 (427)
T 2qag_B           18 PLAG-HVGFDS-LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSNTY   86 (427)
T ss_dssp             CCCC-CC-CC---C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEEEE
T ss_pred             EEee-EEEECC-ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeEEE
Confidence            3455 788964 56 9999999999999  9999999999999999999984        23333321 11123457999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcC-CCh----HHHHHHHHHHHHHc-CCCc----ccCCCC-----------CcCChhH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQ-VPK----DLAQLEISNMIVDL-GIPH----KRTSLA-----------NTLSGGM  137 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~-~~~----~~~~~~~~~~l~~~-~l~~----~~~~~~-----------~~LSgG~  137 (251)
                      ++|++.+++.+||.||+.|+..... ..+    ......+.+++... ++..    ..+.++           ..|+-..
T Consensus        87 v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D  166 (427)
T 2qag_B           87 DLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD  166 (427)
T ss_dssp             EEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH
T ss_pred             EeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH
Confidence            9999998888999999876532110 000    11234555666665 4431    112221           2455554


Q ss_pred             HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh-hh-CCCeEEEEeCCH
Q psy7367         138 QRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK-YK-KGRTVILTTHYM  191 (251)
Q Consensus       138 kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~-l~-~g~tiii~tHd~  191 (251)
                         +.++++|..+++++++|||+..|.+.....+.+.+++ +. .|.+|+.+|.|-
T Consensus       167 ---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d  219 (427)
T 2qag_B          167 ---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD  219 (427)
T ss_dssp             ---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred             ---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence               7999999999999999999999999999999999986 75 599999998763

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.81  E-value=1.9e-23  Score=171.82  Aligned_cols=171  Identities=12%  Similarity=0.015  Sum_probs=116.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCh
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK  106 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~  106 (251)
                      |++++|+||||||||||+++|++   |.+|.++++|.++..     ...+++++|....++.+++++++.+.........
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   73 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINH-----MVVGGYRPPWESDELLALTWKNITDLTVNFLLAQ   73 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHT-----TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhh-----hhccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence            68999999999999999999997   678999998865421     1245677776654555688888876543210000


Q ss_pred             HHHHHHHHHHHHHcCCCcccCCCCCcC--ChhHHHHHHHHH------HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q psy7367         107 DLAQLEISNMIVDLGIPHKRTSLANTL--SGGMQRKLSVAM------AFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY  178 (251)
Q Consensus       107 ~~~~~~~~~~l~~~~l~~~~~~~~~~L--SgG~kqrv~ia~------al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l  178 (251)
                            ...+++.+. .....+...++  |+||+|++.++.      +++.+|+...+|+   ++|+..+.. ++.+..+
T Consensus        74 ------~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~  142 (189)
T 2bdt_A           74 ------NDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESK  142 (189)
T ss_dssp             ------CEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHT
T ss_pred             ------CcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhc
Confidence                  000011110 11111112334  889988888888      8899998888884   899998888 8888887


Q ss_pred             h-CCCeEEEEeCC-HHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367         179 K-KGRTVILTTHY-MDEADLLGDRIAIIAAGKLQCCGSSVFL  218 (251)
Q Consensus       179 ~-~g~tiii~tHd-~~~~~~~~d~i~~l~~G~i~~~g~~~~~  218 (251)
                      . .+.+||.+||. +++++++||+|+  ++|+++..|+++-+
T Consensus       143 ~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~  182 (189)
T 2bdt_A          143 GIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL  182 (189)
T ss_dssp             TCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred             CCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence            5 47899999999 999999999998  99999999987654

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.81  E-value=1.2e-24  Score=197.36  Aligned_cols=173  Identities=13%  Similarity=0.051  Sum_probs=114.3

Q ss_pred             eeeeeeEEEeC--CcEEEEEcCCCCcHHHHHHHHhCCCCCCe----eEEEEc----ceeCCCChHHhhcceEEEccCCCC
Q psy7367          16 AVNGLNVNFYE--DQITSFLGHNGAGKTTTISMLMGMLPVSS----GTAKIY----NHDIRTDMTTIRRSLGVCPQYNAL   85 (251)
Q Consensus        16 il~~isl~i~~--Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~----G~i~~~----g~~~~~~~~~~~~~i~~v~q~~~l   85 (251)
                      +.+.|+++|.+  |+.++|+||||||||||+|+|+|+++|++    |+++++    |.++.....++ +.|++++|++.+
T Consensus       157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~  235 (365)
T 1lw7_A          157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYID  235 (365)
T ss_dssp             GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHH
T ss_pred             ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHH
Confidence            35679999999  99999999999999999999999999999    887764    22221111112 235555554322


Q ss_pred             CCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc-cCCCEEEEeC---CC-
Q psy7367          86 FDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI-GGSRTVILDE---PT-  160 (251)
Q Consensus        86 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~-~~p~llllDE---Pt-  160 (251)
                      +. .|+.+|+.+..                       .+..+..+..+|+|++|+..+++++. .+|++++|||   |+ 
T Consensus       236 ~~-~t~~~nl~~~~-----------------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~  291 (365)
T 1lw7_A          236 YA-VRHSHKIAFID-----------------------TDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWV  291 (365)
T ss_dssp             HH-HHHCSSEEEES-----------------------SCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC--
T ss_pred             HH-HhccCCEEEEe-----------------------CCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcc
Confidence            21 23333332210                       01111123356677788888888774 6999999999   65 


Q ss_pred             -----CCCCHHHHHHHHHHHHhh-hC-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHH
Q psy7367         161 -----SGVDPYSRRSIWELLIKY-KK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV  216 (251)
Q Consensus       161 -----~gLD~~~~~~l~~~l~~l-~~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~  216 (251)
                           +++|+..+..+.+.|.++ ++ +.+|++++|. .+.+++|+++.++++  ++..+++.
T Consensus       292 ~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~~--~l~~~~~~  351 (365)
T 1lw7_A          292 DDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIEK--VLNEEEIS  351 (365)
T ss_dssp             ---------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHHH--HTSCCCCS
T ss_pred             cCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH--Hhcccchh
Confidence                 589999999999999886 33 8999999976 566778887777754  33444433

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.80  E-value=2.5e-23  Score=170.87  Aligned_cols=149  Identities=11%  Similarity=0.068  Sum_probs=100.0

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK  102 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~  102 (251)
                      .+++|++++|+||||||||||+++|+|.  |+.|.|.++|.++.... ..++.++|++|...  +.+++.+|+.+.....
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~-~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~   79 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI-KHGRIDPWLPQSHQ--QNRMIMQIAADVAGRY   79 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC-CSSCCCTTSSSHHH--HHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh-hcccccCCccchhh--hhHHHHHHHHHHHHHH
Confidence            5789999999999999999999999997  78999999987652110 11234677777654  3568899987654321


Q ss_pred             --CCChHHHHHHHHHHHHHcCCCccc--CCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q psy7367         103 --QVPKDLAQLEISNMIVDLGIPHKR--TSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY  178 (251)
Q Consensus       103 --~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l  178 (251)
                        +-..    ..++.++..+++....  +.++..+|+|++|+++++|++..+|+++        +|+...+.+++.+..+
T Consensus        80 ~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l  147 (191)
T 1zp6_A           80 AKEGYF----VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADL  147 (191)
T ss_dssp             HHTSCE----EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred             hccCCe----EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence              0000    0011111112222222  4456789999999999999999999876        6898888888887766


Q ss_pred             hC-CCeEEEEe
Q psy7367         179 KK-GRTVILTT  188 (251)
Q Consensus       179 ~~-g~tiii~t  188 (251)
                      .. +..+|.++
T Consensus       148 ~~~~~~~i~t~  158 (191)
T 1zp6_A          148 GAFEHHVLPVS  158 (191)
T ss_dssp             GGGGGGEEECT
T ss_pred             CcccccEEECC
Confidence            43 33344443

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.80  E-value=9.4e-24  Score=188.45  Aligned_cols=159  Identities=14%  Similarity=0.070  Sum_probs=112.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCC--------CCCeeEEEEcceeCCCC----------------hHHhhcceEEE---c
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGML--------PVSSGTAKIYNHDIRTD----------------MTTIRRSLGVC---P   80 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~--------~p~~G~i~~~g~~~~~~----------------~~~~~~~i~~v---~   80 (251)
                      ++++|+|+||||||||+|.|.|+.        .|+.|+|.++|.++...                ...+++.++++   +
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~   84 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL   84 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence            689999999999999999999997        78999999999987532                12345567877   6


Q ss_pred             cCCCCCCCCCHHHHHHHHH--H----hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEE
Q psy7367          81 QYNALFDKLTVEEHMWFYS--Q----LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTV  154 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~--~----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ll  154 (251)
                      |++.++++.++.||..++.  .    +...+......++..++..+++.+..++.. +||+||+||+..+++++.+|+++
T Consensus        85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~k~dl~  163 (318)
T 1nij_A           85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILLTKTDVA  163 (318)
T ss_dssp             HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEEECTTTC
T ss_pred             hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEEECcccC
Confidence            8777666778887765421  0    100000000111222344455555444433 89999999999999999999988


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhc
Q psy7367         155 ILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLG  198 (251)
Q Consensus       155 llDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~  198 (251)
                        |||         +.+.+.++++..+.+|+++||+...+..+.
T Consensus       164 --de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l~  196 (318)
T 1nij_A          164 --GEA---------EKLHERLARINARAPVYTVTHGDIDLGLLF  196 (318)
T ss_dssp             --SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGGGGS
T ss_pred             --CHH---------HHHHHHHHHhCCCCeEEEecccCCCHHHHh
Confidence              999         778888888877899999999755554443

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.80  E-value=3.2e-19  Score=146.03  Aligned_cols=84  Identities=19%  Similarity=0.184  Sum_probs=72.7

Q ss_pred             ccCCCCCcCChhHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCE
Q psy7367         125 KRTSLANTLSGGMQRKLSVAMAFIG----GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDR  200 (251)
Q Consensus       125 ~~~~~~~~LSgG~kqrv~ia~al~~----~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~  200 (251)
                      ...+++..||||||||++||++|+.    +|+++||||||++||+.++..+.++|+++.++.++|++||+.... .+||+
T Consensus        57 ~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~  135 (173)
T 3kta_B           57 KDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADK  135 (173)
T ss_dssp             SSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSE
T ss_pred             ccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCE
Confidence            3456788999999999999999974    469999999999999999999999999987778899999997665 68999


Q ss_pred             EEEe--eCCEE
Q psy7367         201 IAII--AAGKL  209 (251)
Q Consensus       201 i~~l--~~G~i  209 (251)
                      ++.+  .+|..
T Consensus       136 i~~v~~~~g~s  146 (173)
T 3kta_B          136 IIGVSMRDGVS  146 (173)
T ss_dssp             EEEEEEETTEE
T ss_pred             EEEEEecCCEE
Confidence            9855  46653

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.79  E-value=1.9e-22  Score=173.05  Aligned_cols=142  Identities=18%  Similarity=0.170  Sum_probs=106.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHh---CCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHH--
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLM---GMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ--  100 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~--  100 (251)
                      ++++++|+||||||||||+++|+   |+..|+.|+|.++|.+...   .....+.+++|+..+++..++.+++.....  
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~  102 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAST---EVGEMAKQYIEKSLLVPDHVITRLMMSELENR  102 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTC---HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCC---hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence            47999999999999999999999   9999999999888765321   223445667888888888899999976432  


Q ss_pred             ------hcCCChHHHHHHHHHHHH--HcC------------CCcccCCCCCcCChhHHHHHHHHHHH-ccCCCEEEEe--
Q psy7367         101 ------LKQVPKDLAQLEISNMIV--DLG------------IPHKRTSLANTLSGGMQRKLSVAMAF-IGGSRTVILD--  157 (251)
Q Consensus       101 ------~~~~~~~~~~~~~~~~l~--~~~------------l~~~~~~~~~~LSgG~kqrv~ia~al-~~~p~llllD--  157 (251)
                            +.+.+...  .+++.+..  .++            +....++++.+|||    |+   +|+ +.+|++++||  
T Consensus       103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~  173 (246)
T 2bbw_A          103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV  173 (246)
T ss_dssp             TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred             CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence                  22322221  12222221  222            23345678899999    66   778 9999999999  


Q ss_pred             --CCCCCCCHHHHHHHHHHHHhhh
Q psy7367         158 --EPTSGVDPYSRRSIWELLIKYK  179 (251)
Q Consensus       158 --EPt~gLD~~~~~~l~~~l~~l~  179 (251)
                        |||++||+.+++.+.+.+.++.
T Consensus       174 ~~EP~~~ld~~~~~~i~~~l~~~~  197 (246)
T 2bbw_A          174 TGEPLVQQEDDKPEAVAARLRQYK  197 (246)
T ss_dssp             TCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred             cccccccCCCCcHHHHHHHHHHHH
Confidence              9999999999999999998874

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.79  E-value=4.8e-20  Score=153.98  Aligned_cols=153  Identities=14%  Similarity=0.056  Sum_probs=100.9

Q ss_pred             cceeeeeeE-EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367          14 KLAVNGLNV-NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE   92 (251)
Q Consensus        14 ~~il~~isl-~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~   92 (251)
                      .+.|+.+.. .+++|++++|+||||||||||++.+++  .+..+.++++.                   +..+    +..
T Consensus         6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~-------------------~~~~----~~~   60 (220)
T 2cvh_A            6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDT-------------------EGGF----SPE   60 (220)
T ss_dssp             CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEES-------------------SCCC----CHH
T ss_pred             cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEEC-------------------CCCC----CHH
Confidence            456777765 799999999999999999999999999  33223333322                   2111    111


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhH--HHHHHHHHHHccC-CCEEEEeCCCCCCCHHH--
Q psy7367          93 EHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGM--QRKLSVAMAFIGG-SRTVILDEPTSGVDPYS--  167 (251)
Q Consensus        93 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~--kqrv~ia~al~~~-p~llllDEPt~gLD~~~--  167 (251)
                       .+.-.....+...       +++++.+        .+..+|+++  +|+++.+++++.+ |+++++||||+.+|+..  
T Consensus        61 -~~~~~~~~~~~~~-------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~  124 (220)
T 2cvh_A           61 -RLVQMAETRGLNP-------EEALSRF--------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENR  124 (220)
T ss_dssp             -HHHHHHHTTTCCH-------HHHHHHE--------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGS
T ss_pred             -HHHHHHHhcCCCh-------HHHhhcE--------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCch
Confidence             1111011111111       1122222        233455664  5688888899986 99999999999999743  


Q ss_pred             ------HHHHHHHHHhhh-C-CCeEEEEeCCHH-------------HHHhhcCEEEEeeCC
Q psy7367         168 ------RRSIWELLIKYK-K-GRTVILTTHYMD-------------EADLLGDRIAIIAAG  207 (251)
Q Consensus       168 ------~~~l~~~l~~l~-~-g~tiii~tHd~~-------------~~~~~~d~i~~l~~G  207 (251)
                            ...+++.|+++. + +.|||+++|...             .++.+||++++|+..
T Consensus       125 ~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~  185 (220)
T 2cvh_A          125 SGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL  185 (220)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence                  244555577763 3 899999999875             577899999999865

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.79  E-value=1.4e-20  Score=171.41  Aligned_cols=129  Identities=19%  Similarity=0.160  Sum_probs=98.0

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-eeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHH
Q psy7367          16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS-SGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEH   94 (251)
Q Consensus        16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~   94 (251)
                      +|++++  +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.++..   ..+..++|++|..           
T Consensus       127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~---~~~~~~~~v~Q~~-----------  190 (372)
T 2ewv_A          127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY---VFKHKKSIVNQRE-----------  190 (372)
T ss_dssp             SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS---CCCCSSSEEEEEE-----------
T ss_pred             HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh---hhccCceEEEeee-----------
Confidence            455554  7899999999999999999999999999998 8999887766532   2356788898851           


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy7367          95 MWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL  174 (251)
Q Consensus        95 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~  174 (251)
                                               ++++      +..|      +.+|+++|..+|+++++|||+   |+....   ..
T Consensus       191 -------------------------~g~~------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~---~~  227 (372)
T 2ewv_A          191 -------------------------VGED------TKSF------ADALRAALREDPDVIFVGEMR---DLETVE---TA  227 (372)
T ss_dssp             -------------------------BTTT------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHH---HH
T ss_pred             -------------------------cCCC------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHH---HH
Confidence                                     2222      2333      469999999999999999999   776543   33


Q ss_pred             HHhhhCCCeEEEEeCCHHHHHhhcCEEEEe
Q psy7367         175 LIKYKKGRTVILTTHYMDEADLLGDRIAII  204 (251)
Q Consensus       175 l~~l~~g~tiii~tHd~~~~~~~~d~i~~l  204 (251)
                      ++....|.+|+.++|+.+ +...|||++.|
T Consensus       228 l~~~~~g~~vi~t~H~~~-~~~~~~rl~~l  256 (372)
T 2ewv_A          228 LRAAETGHLVFGTLHTNT-AIDTIHRIVDI  256 (372)
T ss_dssp             HHHHTTTCEEEECCCCCS-HHHHHHHHHHT
T ss_pred             HHHHhcCCEEEEEECcch-HHHHHHHHHHh
Confidence            444445899999999965 66677776544

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.78  E-value=6.2e-20  Score=155.52  Aligned_cols=145  Identities=19%  Similarity=0.244  Sum_probs=86.6

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhC--CCCC-----CeeEEEEcceeCCC--ChHHhhcceEEEccCCCCCCCCCHHH
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMG--MLPV-----SSGTAKIYNHDIRT--DMTTIRRSLGVCPQYNALFDKLTVEE   93 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~G--l~~p-----~~G~i~~~g~~~~~--~~~~~~~~i~~v~q~~~l~~~ltv~e   93 (251)
                      .|++|++++|+||||||||||++.|++  +.+|     ..|.+++++++...  ....+.+.+++.+|+        +.+
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~--------~~~   91 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD--------VLD   91 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH--------HHH
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH--------Hhh
Confidence            589999999999999999999999999  5665     57888888765311  111222344443331        112


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHH-HHHHHHHc--cCCCEEEEeCCCCCCCHH----
Q psy7367          94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRK-LSVAMAFI--GGSRTVILDEPTSGVDPY----  166 (251)
Q Consensus        94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqr-v~ia~al~--~~p~llllDEPt~gLD~~----  166 (251)
                      |+.+                                ...++..+... +.-+..++  .+|+++++|||++.+|+.    
T Consensus        92 ~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~  139 (243)
T 1n0w_A           92 NVAY--------------------------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGR  139 (243)
T ss_dssp             TEEE--------------------------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC------
T ss_pred             CeEE--------------------------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCC
Confidence            1110                                01122222111 11122222  689999999999999985    


Q ss_pred             ---H-----HHHHHHHHHhh-hC-CCeEEEEeCCHHHHHh-------------------hcCEEEEeeCC
Q psy7367         167 ---S-----RRSIWELLIKY-KK-GRTVILTTHYMDEADL-------------------LGDRIAIIAAG  207 (251)
Q Consensus       167 ---~-----~~~l~~~l~~l-~~-g~tiii~tHd~~~~~~-------------------~~d~i~~l~~G  207 (251)
                         .     ...++..|.++ ++ |+|||+++|.......                   +||++++|+.+
T Consensus       140 ~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~  209 (243)
T 1n0w_A          140 GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG  209 (243)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence               3     34455555555 33 9999999997765543                   79999999865

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.78  E-value=2.7e-23  Score=186.98  Aligned_cols=171  Identities=15%  Similarity=0.125  Sum_probs=120.1

Q ss_pred             EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh-----HHhhcce
Q psy7367           2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM-----TTIRRSL   76 (251)
Q Consensus         2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~-----~~~~~~i   76 (251)
                      ++++++++|+ .+.+|+++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++....     ...+.++
T Consensus        31 e~~~~~~~~~-~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i  109 (337)
T 2qm8_A           31 ESRRADHRAA-VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRM  109 (337)
T ss_dssp             TCSSHHHHHH-HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGS
T ss_pred             eeCCcccccC-hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhh
Confidence            4567777884 367999999999999999999999999999999999999999999999998874211     1245679


Q ss_pred             EEEccCCCCCCCCC------------HHHHHHHH-----------------------------HHhcCCC-hHHHH---H
Q psy7367          77 GVCPQYNALFDKLT------------VEEHMWFY-----------------------------SQLKQVP-KDLAQ---L  111 (251)
Q Consensus        77 ~~v~q~~~l~~~lt------------v~e~l~~~-----------------------------~~~~~~~-~~~~~---~  111 (251)
                      ++++|++.+|...+            +.|.+...                             ..+.... ..+.+   .
T Consensus       110 ~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~  189 (337)
T 2qm8_A          110 ARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKK  189 (337)
T ss_dssp             TTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCT
T ss_pred             eeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHH
Confidence            99999988775321            23332110                             0000000 01100   0


Q ss_pred             HHHHHHHHcCCCcccCC-CCCcCChhHHHHHHHHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q psy7367         112 EISNMIVDLGIPHKRTS-LANTLSGGMQRKLSVAMAFIG------GSRTVILDEPTSGVDPYSRRSIWELLIKY  178 (251)
Q Consensus       112 ~~~~~l~~~~l~~~~~~-~~~~LSgG~kqrv~ia~al~~------~p~llllDEPt~gLD~~~~~~l~~~l~~l  178 (251)
                      .+.+....+.+ ...|. ....+|+|++|++..|++++.      .|++++    +|++|......+++.|.++
T Consensus       190 ~i~~~~~ivvl-NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~  258 (337)
T 2qm8_A          190 GIFELADMIAV-NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH  258 (337)
T ss_dssp             THHHHCSEEEE-ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred             HHhccccEEEE-EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence            11122222223 33442 335789999999999999987      688876    9999999999999999875

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.77  E-value=7.2e-21  Score=172.63  Aligned_cols=138  Identities=14%  Similarity=0.134  Sum_probs=106.0

Q ss_pred             eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc-cCCCCCCCCCHHHHH
Q psy7367          17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP-QYNALFDKLTVEEHM   95 (251)
Q Consensus        17 l~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~-q~~~l~~~ltv~e~l   95 (251)
                      ++++||++++|++++|+||||||||||+++|+|+++|++|.|+++|..- ......++.++|++ |++.+          
T Consensus       165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e-~~~~~~~~~v~~v~~q~~~~----------  233 (361)
T 2gza_A          165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPE-LFLPDHPNHVHLFYPSEAKE----------  233 (361)
T ss_dssp             HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSC-CCCTTCSSEEEEECC---------------
T ss_pred             HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccc-cCccccCCEEEEeecCcccc----------
Confidence            3999999999999999999999999999999999999999999998531 11222456789998 65431          


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy7367          96 WFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL  175 (251)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l  175 (251)
                                                          .++++..++..|+.++..+|+.+++|||..       ..+.+.+
T Consensus       234 ------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l  270 (361)
T 2gza_A          234 ------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFI  270 (361)
T ss_dssp             -----------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHH
T ss_pred             ------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHH
Confidence                                                012333477888999999999999999986       3466677


Q ss_pred             HhhhCC-CeEEEEeCCHHHHHhhcCEEEEeeCCEE
Q psy7367         176 IKYKKG-RTVILTTHYMDEADLLGDRIAIIAAGKL  209 (251)
Q Consensus       176 ~~l~~g-~tiii~tHd~~~~~~~~d~i~~l~~G~i  209 (251)
                      ..+..| .|++.++|..+ +...++|+..+..+..
T Consensus       271 ~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~~  304 (361)
T 2gza_A          271 NVAASGHGGSITSCHAGS-CELTFERLALMVLQNR  304 (361)
T ss_dssp             HHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTST
T ss_pred             HHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhccc
Confidence            777664 57899999965 7778999999988753

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.76  E-value=2.4e-19  Score=162.16  Aligned_cols=122  Identities=18%  Similarity=0.198  Sum_probs=93.9

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-CCeeEEEEc-ceeCCCChHHhhcceEEEccCCCCCCCCCHHH
Q psy7367          16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-VSSGTAKIY-NHDIRTDMTTIRRSLGVCPQYNALFDKLTVEE   93 (251)
Q Consensus        16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-p~~G~i~~~-g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e   93 (251)
                      -++++++. .+|++++|+||||||||||+|+|+|+.+ |++|+|.++ |+...   ...++.+++++|+..+++..++++
T Consensus       205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~---tt~~~~i~~v~q~~~l~dtpgv~e  280 (358)
T 2rcn_A          205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH---TTTAARLYHFPHGGDVIDSPGVRE  280 (358)
T ss_dssp             THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC----------------CCCEEEECTTSCEEEECHHHHT
T ss_pred             CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc---ceEEEEEEEECCCCEecCcccHHH
Confidence            45677764 4899999999999999999999999999 999999987 76542   123567999999998888888888


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHH
Q psy7367          94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      +.     +.+.+.++....+.++++.+++..+.+.++.+|| ||+||++||+++
T Consensus       281 ~~-----l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl  328 (358)
T 2rcn_A          281 FG-----LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA  328 (358)
T ss_dssp             CC-----CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred             hh-----hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence            41     2345555666778889999999999999999999 999999999875

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.76  E-value=1e-19  Score=163.03  Aligned_cols=165  Identities=16%  Similarity=0.099  Sum_probs=116.7

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh-----HHhh--cceEEEccCCCCCCCCCHHHHH
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM-----TTIR--RSLGVCPQYNALFDKLTVEEHM   95 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~-----~~~~--~~i~~v~q~~~l~~~ltv~e~l   95 (251)
                      ..++|++++|+||||||||||+++|+|+++|++|+|.+.|.++....     ..++  ..+.+++|...++|.+++++|+
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l  204 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI  204 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence            34789999999999999999999999999999999999999985321     1222  3566999999999999999999


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy7367          96 WFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL  175 (251)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l  175 (251)
                      .++.... ...        -+++..|+.+.....+.+||       .+++++..++++++||.++.       ..+++.+
T Consensus       205 ~~~~~~~-~d~--------vliDtaG~~~~~~~l~~eL~-------~i~ral~~de~llvLDa~t~-------~~~~~~~  261 (328)
T 3e70_C          205 QHAKARG-IDV--------VLIDTAGRSETNRNLMDEMK-------KIARVTKPNLVIFVGDALAG-------NAIVEQA  261 (328)
T ss_dssp             HHHHHHT-CSE--------EEEEECCSCCTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-------THHHHHH
T ss_pred             HHHHhcc-chh--------hHHhhccchhHHHHHHHHHH-------HHHHHhcCCCCEEEEecHHH-------HHHHHHH
Confidence            8754311 000        01233344333333344444       48999999999999996654       3455566


Q ss_pred             Hhhh--CCCeEEEEeCCH---------HHHHhhcCEEEEeeCCEEE
Q psy7367         176 IKYK--KGRTVILTTHYM---------DEADLLGDRIAIIAAGKLQ  210 (251)
Q Consensus       176 ~~l~--~g~tiii~tHd~---------~~~~~~~d~i~~l~~G~i~  210 (251)
                      +.+.  .+.|+|++||.-         +.+....-.|.++..|+-+
T Consensus       262 ~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v  307 (328)
T 3e70_C          262 RQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY  307 (328)
T ss_dssp             HHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred             HHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence            6664  389999999954         2334445667777777653

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.76  E-value=9.4e-22  Score=158.83  Aligned_cols=86  Identities=23%  Similarity=0.198  Sum_probs=72.5

Q ss_pred             eEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCC
Q psy7367           5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNA   84 (251)
Q Consensus         5 ~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~   84 (251)
                      +++++|+ ++.+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.++.... ..+   .++||++.
T Consensus        12 ~~~~~~g-~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~-~~~---~~~~q~~~   85 (158)
T 1htw_A           12 FSMLRFG-KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEY-NIA---GKMIYHFD   85 (158)
T ss_dssp             HHHHHHH-HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEE-EET---TEEEEEEE
T ss_pred             HHHHHHH-HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeec-cCC---Ccceeccc
Confidence            4566775 367999999999999999999999999999999999999 99999999998874211 111   27999998


Q ss_pred             CCCCCCHHHHHHH
Q psy7367          85 LFDKLTVEEHMWF   97 (251)
Q Consensus        85 l~~~ltv~e~l~~   97 (251)
                      +| .+|+.||+.+
T Consensus        86 l~-~ltv~e~l~~   97 (158)
T 1htw_A           86 LY-RLADPEELEF   97 (158)
T ss_dssp             CT-TCSCTTHHHH
T ss_pred             cc-cCCcHHHHHH
Confidence            88 8999999965

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.75  E-value=4.4e-20  Score=172.68  Aligned_cols=154  Identities=17%  Similarity=0.155  Sum_probs=108.4

Q ss_pred             eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh-----HH--hhcceEEEccCCCCCCCC
Q psy7367          17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM-----TT--IRRSLGVCPQYNALFDKL   89 (251)
Q Consensus        17 l~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~-----~~--~~~~i~~v~q~~~l~~~l   89 (251)
                      -+++||++++|++++|+|+||||||||+++|+|+++|++|+|.+.|.++....     ..  .+++|+|++|+..+++.+
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~  362 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS  362 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence            46899999999999999999999999999999999999999999988764321     12  356899999998888888


Q ss_pred             CHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc-cCC-CEEEEeCCCCCCCHHH
Q psy7367          90 TVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI-GGS-RTVILDEPTSGVDPYS  167 (251)
Q Consensus        90 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~-~~p-~llllDEPt~gLD~~~  167 (251)
                      ++++|+.++... +...      +  +++..|..+.....+.+|    +|++.+++++. ..| +++|...|++|.|.. 
T Consensus       363 tV~e~l~~a~~~-~~Dv------V--LIDTaGrl~~~~~lm~EL----~kiv~iar~l~~~~P~evLLvLDattGq~al-  428 (503)
T 2yhs_A          363 VIFDAIQAAKAR-NIDV------L--IADTAGRLQNKSHLMEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV-  428 (503)
T ss_dssp             HHHHHHHHHHHT-TCSE------E--EECCCCSCCCHHHHHHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH-
T ss_pred             HHHHHHHHHHhc-CCCE------E--EEeCCCccchhhhHHHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHHH-
Confidence            999999886431 1110      0  122222221111112223    47888888764 456 456666688886654 


Q ss_pred             HHHHHHHHHhhh--CCCeEEEEeC
Q psy7367         168 RRSIWELLIKYK--KGRTVILTTH  189 (251)
Q Consensus       168 ~~~l~~~l~~l~--~g~tiii~tH  189 (251)
                           +.++.++  -+.|.+++||
T Consensus       429 -----~~ak~f~~~~~itgvIlTK  447 (503)
T 2yhs_A          429 -----SQAKLFHEAVGLTGITLTK  447 (503)
T ss_dssp             -----HHHHHHHHHTCCSEEEEEC
T ss_pred             -----HHHHHHHhhcCCCEEEEEc
Confidence                 3344443  3789999999

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.73  E-value=4.6e-20  Score=163.50  Aligned_cols=121  Identities=11%  Similarity=0.111  Sum_probs=89.2

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEE---cceeCCCChHHhh-cceEEEccCCCCC-----CCCCHHH
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI---YNHDIRTDMTTIR-RSLGVCPQYNALF-----DKLTVEE   93 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~---~g~~~~~~~~~~~-~~i~~v~q~~~l~-----~~ltv~e   93 (251)
                      ++.+|++++|+||||||||||+|+|+ +.+|++|+|.+   +|+++.......+ +.+||++|.|.+.     +++|+ |
T Consensus       161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e  238 (302)
T 2yv5_A          161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R  238 (302)
T ss_dssp             HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred             hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence            45679999999999999999999999 99999999999   9988754332222 3689999998653     67899 8


Q ss_pred             HH--HHH------HHhcC-CChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHH
Q psy7367          94 HM--WFY------SQLKQ-VPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAM  145 (251)
Q Consensus        94 ~l--~~~------~~~~~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~  145 (251)
                      |+  .|.      +++++ ....+...++.++++.++|.+ ..++++..|||.+++++.|||
T Consensus       239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~  300 (302)
T 2yv5_A          239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR  300 (302)
T ss_dssp             GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred             HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88  443      12332 122233456889999999986 788899999998899999986

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.71  E-value=4e-21  Score=177.37  Aligned_cols=146  Identities=15%  Similarity=0.130  Sum_probs=103.3

Q ss_pred             EEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh-----HHhhcceE
Q psy7367           3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM-----TTIRRSLG   77 (251)
Q Consensus         3 i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~-----~~~~~~i~   77 (251)
                      ++++++.|+ ...+|+++ +. .+|++++|+|||||||||||++|+|+++|++|+|.+.+.++....     ..++++++
T Consensus       146 l~~Lg~~~~-~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g  222 (418)
T 1p9r_A          146 LHSLGMTAH-NHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVD  222 (418)
T ss_dssp             GGGSCCCHH-HHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGT
T ss_pred             HHHcCCCHH-HHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccC
Confidence            344555553 24467777 43 799999999999999999999999999999999999998774311     12334566


Q ss_pred             EEc---------cCCCC--CCC----CCHHHHHHHHHHhc----CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHH
Q psy7367          78 VCP---------QYNAL--FDK----LTVEEHMWFYSQLK----QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQ  138 (251)
Q Consensus        78 ~v~---------q~~~l--~~~----ltv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~k  138 (251)
                      +.|         |+|.+  +..    .|+.+++.+...-+    ......... +.+.|..+++....  .+.+|||||+
T Consensus       223 ~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~~~~LSgg~~  299 (418)
T 1p9r_A          223 MTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--ISSSLLGVLA  299 (418)
T ss_dssp             BCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--HHHHEEEEEE
T ss_pred             cCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--HHHHHHHHHH
Confidence            655         88865  333    58899987754211    001111112 33357778988764  6889999999


Q ss_pred             HHHHHHHHHccCCCEEEE
Q psy7367         139 RKLSVAMAFIGGSRTVIL  156 (251)
Q Consensus       139 qrv~ia~al~~~p~llll  156 (251)
                      ||  ||++|+.+|++..-
T Consensus       300 QR--LaraL~~~p~~~~~  315 (418)
T 1p9r_A          300 QR--LVRTLCPDCKEPYE  315 (418)
T ss_dssp             EE--EEEEECTTTCEEEE
T ss_pred             HH--hhhhhcCCCCccCC
Confidence            99  99999999998763

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.71  E-value=4.6e-17  Score=147.85  Aligned_cols=77  Identities=32%  Similarity=0.414  Sum_probs=69.8

Q ss_pred             CCCCcCChhHHHHH------HHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCE
Q psy7367         128 SLANTLSGGMQRKL------SVAMAFIGG-SRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDR  200 (251)
Q Consensus       128 ~~~~~LSgG~kqrv------~ia~al~~~-p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~  200 (251)
                      +++..|||||+||+      ++|++++.+ |+++||||||++||+..+..+.+.|.++.++.+||++||+++ +..+||+
T Consensus       276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~  354 (371)
T 3auy_A          276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV  354 (371)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred             cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence            46789999999988      567889999 999999999999999999999999999865678999999986 5789999


Q ss_pred             EEEee
Q psy7367         201 IAIIA  205 (251)
Q Consensus       201 i~~l~  205 (251)
                      +++|+
T Consensus       355 ~~~l~  359 (371)
T 3auy_A          355 IINVK  359 (371)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99997

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.69  E-value=3e-17  Score=146.77  Aligned_cols=138  Identities=17%  Similarity=0.154  Sum_probs=79.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC-CCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChH
Q psy7367          29 ITSFLGHNGAGKTTTISMLMG-MLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD  107 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~  107 (251)
                      .+.|.||||+|||||++++++ +..|+.|.+.++|.+...... .+..+++++|.+.+....+-  .       ......
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~  107 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN-RKLELNVVSSPYHLEITPSD--M-------GNNDRI  107 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHHSCTTCCC-------------------CCEECSSEEEECCC-------------CCHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc-ccceeeeecccceEEecHhh--c-------CCcchH
Confidence            389999999999999999999 889999999999987643222 25678899887654221110  0       000111


Q ss_pred             HHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEE
Q psy7367         108 LAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILT  187 (251)
Q Consensus       108 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~  187 (251)
                      ..++.++++.+..++....     .|||           +..+|+++|+|||++ ||+.++..+++.+.+...+.++|++
T Consensus       108 ~~~~~i~~~~~~~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~  170 (354)
T 1sxj_E          108 VIQELLKEVAQMEQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMV  170 (354)
T ss_dssp             HHHHHHHHHTTTTC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEE
T ss_pred             HHHHHHHHHHHhccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEE
Confidence            1222233332222332221     5666           788999999999999 9999999999999988778999999


Q ss_pred             eCCHHH
Q psy7367         188 THYMDE  193 (251)
Q Consensus       188 tHd~~~  193 (251)
                      ||+++.
T Consensus       171 t~~~~~  176 (354)
T 1sxj_E          171 CDSMSP  176 (354)
T ss_dssp             ESCSCS
T ss_pred             eCCHHH
Confidence            999753

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.68  E-value=5.4e-18  Score=138.19  Aligned_cols=112  Identities=18%  Similarity=0.194  Sum_probs=77.8

Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHH
Q psy7367          21 NVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ  100 (251)
Q Consensus        21 sl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~  100 (251)
                      +|++++|+.++|+||||||||||+++|++.+.|.+|..                 +.|          +++.+.+.....
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-----------------~~~----------~~~~~~~~~~~~   84 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-----------------GYF----------FDTKDLIFRLKH   84 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-----------------CCE----------EEHHHHHHHHHH
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-----------------EEE----------EEHHHHHHHHHH
Confidence            57788999999999999999999999999887665521                 111          233333322110


Q ss_pred             hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHHhhh
Q psy7367         101 LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTS-GVDPYSRRSIWELLIKYK  179 (251)
Q Consensus       101 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~-gLD~~~~~~l~~~l~~l~  179 (251)
                                     ....-...                   -+...+.+|++|+||||++ ++|+..+..+.+++.+..
T Consensus        85 ---------------~~~~~~~~-------------------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~  130 (180)
T 3ec2_A           85 ---------------LMDEGKDT-------------------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRY  130 (180)
T ss_dssp             ---------------HHHHTCCS-------------------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHH
T ss_pred             ---------------HhcCchHH-------------------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHH
Confidence                           01100000                   0112234999999999985 999999999999998874


Q ss_pred             -CCCeEEEEeCCHHH
Q psy7367         180 -KGRTVILTTHYMDE  193 (251)
Q Consensus       180 -~g~tiii~tHd~~~  193 (251)
                       +|+++|++||....
T Consensus       131 ~~~~~ii~tsn~~~~  145 (180)
T 3ec2_A          131 NNLKSTIITTNYSLQ  145 (180)
T ss_dssp             HTTCEEEEECCCCSC
T ss_pred             HcCCCEEEEcCCChh
Confidence             78999999997643

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=99.68  E-value=7.2e-20  Score=172.96  Aligned_cols=170  Identities=15%  Similarity=0.189  Sum_probs=113.7

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEccee-CCCChHHhhcceEEEccCCC---------
Q psy7367          15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD-IRTDMTTIRRSLGVCPQYNA---------   84 (251)
Q Consensus        15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~-~~~~~~~~~~~i~~v~q~~~---------   84 (251)
                      .+++++++.+++|++++|+|||||||||||++|+|+++|++|.|++.|.+ +....   ...+++..|...         
T Consensus       248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~~~  324 (511)
T 2oap_1          248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDMYD  324 (511)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCHHH
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeecccccCCcCHHH
Confidence            46789999999999999999999999999999999999999999998865 22110   123444443221         


Q ss_pred             -------------CCCCCCHHHHHHHHHHhc-CCCh--HHHHHHHHHHHHHcCC-----Cc----ccC---CCCCcCChh
Q psy7367          85 -------------LFDKLTVEEHMWFYSQLK-QVPK--DLAQLEISNMIVDLGI-----PH----KRT---SLANTLSGG  136 (251)
Q Consensus        85 -------------l~~~ltv~e~l~~~~~~~-~~~~--~~~~~~~~~~l~~~~l-----~~----~~~---~~~~~LSgG  136 (251)
                                   ++..++..|++.+..... +...  ......+.++++++..     ..    ..+   .....+|+|
T Consensus       325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G  404 (511)
T 2oap_1          325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN  404 (511)
T ss_dssp             HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred             HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence                         234566666555433322 2100  0000112333444332     21    112   234568999


Q ss_pred             HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEE--EeCCHHHHHhhcC
Q psy7367         137 MQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVIL--TTHYMDEADLLGD  199 (251)
Q Consensus       137 ~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii--~tHd~~~~~~~~d  199 (251)
                      |+||+++|.          + | |+||||.....+++.+.++. .+.|+++  +||++++++..|+
T Consensus       405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g  458 (511)
T 2oap_1          405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG  458 (511)
T ss_dssp             CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred             CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence            999987651          1 7 99999998888888887775 4889885  9999999998885

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.67  E-value=1e-20  Score=169.63  Aligned_cols=173  Identities=18%  Similarity=0.210  Sum_probs=120.2

Q ss_pred             EEeEEEEeCCCcceeeeeeEEEeCC-------cEEEEEcCCCCcHHHHHHHHhCCC----CCCeeEEEEcceeCCCChHH
Q psy7367           3 IQNLSKRFPNGKLAVNGLNVNFYED-------QITSFLGHNGAGKTTTISMLMGML----PVSSGTAKIYNHDIRTDMTT   71 (251)
Q Consensus         3 i~~l~~~y~~~~~il~~isl~i~~G-------e~~~liG~NGaGKSTLlk~l~Gl~----~p~~G~i~~~g~~~~~~~~~   71 (251)
                      .++++..|+ ...+++++++.+++|       +.++|+||||+|||||+++|+|.+    .|++|.+..++.++......
T Consensus        21 ~~~l~~~~g-~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~   99 (334)
T 1in4_A           21 PKSLDEFIG-QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTS   99 (334)
T ss_dssp             CSSGGGCCS-CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHH
T ss_pred             CccHHHccC-cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHH
Confidence            455666675 367899999999887       899999999999999999999988    67788777666554211111


Q ss_pred             h-hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC----hHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHH
Q psy7367          72 I-RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP----KDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMA  146 (251)
Q Consensus        72 ~-~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~a  146 (251)
                      . +..|.|++|...+.+  ++.|++..........    .....+.+...+..+++.. ..+++..||+|++||+.++  
T Consensus       100 ~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l~--  174 (334)
T 1in4_A          100 LERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFGII--  174 (334)
T ss_dssp             CCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGGGSCHHHHTTCSEE--
T ss_pred             ccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcCce--
Confidence            2 457999999887765  7888885444332211    1122234555666677655 6678899999999998654  


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhC--CCeEEEEeCCHHHHHhhcCE
Q psy7367         147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDR  200 (251)
Q Consensus       147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--g~tiii~tHd~~~~~~~~d~  200 (251)
                                    .+||+.+.+.+.++|++..+  +     ++|+.+.+..+|++
T Consensus       175 --------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~~  211 (334)
T 1in4_A          175 --------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAKR  211 (334)
T ss_dssp             --------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHT
T ss_pred             --------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHh
Confidence                          78888889999999987642  4     36888888887764

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=99.66  E-value=2.6e-17  Score=151.06  Aligned_cols=145  Identities=14%  Similarity=0.173  Sum_probs=91.9

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHH--HHhCCCCCCee-----EEEEcceeCCCC--hHHhhcceEEEccCCCCCCCCCHHH
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTIS--MLMGMLPVSSG-----TAKIYNHDIRTD--MTTIRRSLGVCPQYNALFDKLTVEE   93 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk--~l~Gl~~p~~G-----~i~~~g~~~~~~--~~~~~~~i~~v~q~~~l~~~ltv~e   93 (251)
                      -|++|+++.|+||||||||||++  +++++.+|+.|     .+++++++....  ...+.+++++.+|        ++.+
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~--------~vle  245 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD--------DALN  245 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH--------HHHH
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH--------hHhh
Confidence            68999999999999999999999  45677776544     788887653221  1122334444333        2333


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHH--HHHHHHHHH--ccCCCEEEEeCCCCCCCHHHH-
Q psy7367          94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQ--RKLSVAMAF--IGGSRTVILDEPTSGVDPYSR-  168 (251)
Q Consensus        94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~k--qrv~ia~al--~~~p~llllDEPt~gLD~~~~-  168 (251)
                      |+.+..                                 ...++.  +.+.-+..+  ..+|+++++|||++.+|+... 
T Consensus       246 ni~~~~---------------------------------~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg  292 (400)
T 3lda_A          246 NVAYAR---------------------------------AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG  292 (400)
T ss_dssp             TEEEEE---------------------------------CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-----
T ss_pred             cEEEec---------------------------------cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC
Confidence            332210                                 011111  111111222  257999999999999997543 


Q ss_pred             -----------HHHHHHHHhhh-C-CCeEEEEeCCH-------------------HHHHhhcCEEEEeeCCE
Q psy7367         169 -----------RSIWELLIKYK-K-GRTVILTTHYM-------------------DEADLLGDRIAIIAAGK  208 (251)
Q Consensus       169 -----------~~l~~~l~~l~-~-g~tiii~tHd~-------------------~~~~~~~d~i~~l~~G~  208 (251)
                                 ..+++.|+++. + |.|||+++|..                   ..+..+||.+++|+.++
T Consensus       293 ~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~  364 (400)
T 3lda_A          293 RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK  364 (400)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence                       56777777774 3 99999999982                   23577799999998763

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.66  E-value=3.7e-19  Score=145.41  Aligned_cols=136  Identities=18%  Similarity=0.157  Sum_probs=85.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEcceeCCC-C---hHHhh-cceE----EEccCCCCCCCCCHHHHH
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGMLPVS---SGTAKIYNHDIRT-D---MTTIR-RSLG----VCPQYNALFDKLTVEEHM   95 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~-~---~~~~~-~~i~----~v~q~~~l~~~ltv~e~l   95 (251)
                      ++++|+|+||||||||+++|+|+++|+   .|.|.++|.++.. .   ...+| +.++    +++|++.+|-    .+  
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i----~~--   76 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI----RR--   76 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE----EE--
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE----ec--
Confidence            589999999999999999999999998   9999999988532 1   23455 3577    8888876551    00  


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHH-c-CCCcccCCCCCcCChhHHHHHHHHHHHccCCCEE-------EEeCCCC---CC
Q psy7367          96 WFYSQLKQVPKDLAQLEISNMIVD-L-GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTV-------ILDEPTS---GV  163 (251)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~l~~-~-~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ll-------llDEPt~---gL  163 (251)
                             .  ..+....+.++++. + +++...-   ..|||||+||++||||++.+|++.       .=|.|..   -+
T Consensus        77 -------~--~~~~~a~l~~~i~~~l~g~dt~i~---EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f  144 (171)
T 2f1r_A           77 -------V--SEEEGNDLDWIYERYLSDYDLVIT---EGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWF  144 (171)
T ss_dssp             -------C--CHHHHTCHHHHHHHHTTTCSEEEE---ESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEE
T ss_pred             -------C--ChhhhhCHHHHHHhhCCCCCEEEE---CCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCccc
Confidence                   0  01111134455555 4 4443332   249999999999999999999873       2244431   23


Q ss_pred             CHHHHHHHHHHHHhh-hCC
Q psy7367         164 DPYSRRSIWELLIKY-KKG  181 (251)
Q Consensus       164 D~~~~~~l~~~l~~l-~~g  181 (251)
                      |....+.+.+++.+. .+|
T Consensus       145 ~~~~~~~~a~~i~~~~~~~  163 (171)
T 2f1r_A          145 RRDEVERIAEFILSLLREG  163 (171)
T ss_dssp             CTTCHHHHHHHHHHHHTC-
T ss_pred             CcccHHHHHHHHHHHHhcc
Confidence            444556677776554 443

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.65  E-value=2.1e-17  Score=152.40  Aligned_cols=152  Identities=16%  Similarity=0.147  Sum_probs=96.4

Q ss_pred             eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc----------cCCCCC
Q psy7367          17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP----------QYNALF   86 (251)
Q Consensus        17 l~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~----------q~~~l~   86 (251)
                      -++++|+++.|+.++|+|+|||||||||++|+|..+      .+.+.+...    +...+++++          +.+.+.
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT----l~p~~G~V~~~~~~~~~l~DtpGli  216 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT----LSPNLGVVEVSEEERFTLADIPGII  216 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS----SCCEEEEEECSSSCEEEEEECCCCC
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce----ecceeeEEEecCcceEEEEeccccc
Confidence            479999999999999999999999999999999842      222322211    112234443          333332


Q ss_pred             CCCCHHHHHHHHHHhcCCChHHH--HHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q psy7367          87 DKLTVEEHMWFYSQLKQVPKDLA--QLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD  164 (251)
Q Consensus        87 ~~ltv~e~l~~~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD  164 (251)
                      ..  ..++       .++.....  .++++.++..+++.   +.++.+||+|++|++++|++|+..|.++++    +.+|
T Consensus       217 ~~--a~~~-------~~L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlD  280 (416)
T 1udx_A          217 EG--ASEG-------KGLGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVD  280 (416)
T ss_dssp             CC--GGGS-------CCSCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCT
T ss_pred             cc--hhhh-------hhhhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCC
Confidence            21  1111       11111110  11233344445554   567889999999999999999999999999    9999


Q ss_pred             HHHHHHHHHHHH-hhh-CCCeEEEEe-CCHHHHH
Q psy7367         165 PYSRRSIWELLI-KYK-KGRTVILTT-HYMDEAD  195 (251)
Q Consensus       165 ~~~~~~l~~~l~-~l~-~g~tiii~t-Hd~~~~~  195 (251)
                      +... ..++.+. .++ .+.+++++| |.-+-+.
T Consensus       281 l~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~  313 (416)
T 1udx_A          281 LLEE-EAVKALADALAREGLAVLPVSALTGAGLP  313 (416)
T ss_dssp             TSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             hhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence            9877 4444444 444 376766655 4443333

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.64  E-value=6.2e-19  Score=156.45  Aligned_cols=138  Identities=14%  Similarity=0.092  Sum_probs=100.3

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEE-------------------eCCcEEEEEcCCCCcHHHHHHHHhCCCC--CCeeEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNF-------------------YEDQITSFLGHNGAGKTTTISMLMGMLP--VSSGTAK   59 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i-------------------~~Ge~~~liG~NGaGKSTLlk~l~Gl~~--p~~G~i~   59 (251)
                      |+++||++.|   .++++++++.+                   .+|+++||+||||||||||+++|+|++.  |++|+|.
T Consensus        38 i~~~~v~~~y---~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~  114 (308)
T 1sq5_A           38 LSLEEVAEIY---LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE  114 (308)
T ss_dssp             CCHHHHHHTH---HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred             cchHhHHHHH---HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence            3567788888   26899999988                   8999999999999999999999999988  9999999


Q ss_pred             E---cceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChh
Q psy7367          60 I---YNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGG  136 (251)
Q Consensus        60 ~---~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG  136 (251)
                      +   +|....   ...++.++++ |...+++.+++.+++.+...+.....                  ....+....+.+
T Consensus       115 vi~~d~~~~~---~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~------------------~i~~P~~~~~~~  172 (308)
T 1sq5_A          115 LITTDGFLHP---NQVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP------------------NVTAPVYSHLIY  172 (308)
T ss_dssp             EEEGGGGBCC---HHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS------------------CEEECCEETTTT
T ss_pred             EEecCCccCc---HHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC------------------ceeccccccccc
Confidence            9   887642   1234568888 88888888999999988765542110                  011122222222


Q ss_pred             HHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q psy7367         137 MQRKLSVAMAFIGGSRTVILDEPTSGVDP  165 (251)
Q Consensus       137 ~kqrv~ia~al~~~p~llllDEPt~gLD~  165 (251)
                        +|+..+.+.+.+|+++|+|.|....++
T Consensus       173 --~~~~~~~~~~~~~~ivIlEG~~l~~~~  199 (308)
T 1sq5_A          173 --DVIPDGDKTVVQPDILILEGLNVLQSG  199 (308)
T ss_dssp             --EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred             --CcccccceecCCCCEEEECchhhCCCc
Confidence              333333345678999999999998873

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.64  E-value=2.5e-18  Score=152.13  Aligned_cols=110  Identities=11%  Similarity=0.177  Sum_probs=77.2

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEE---cceeCCCChHHhh-cceEEEccCCC-------------
Q psy7367          22 VNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI---YNHDIRTDMTTIR-RSLGVCPQYNA-------------   84 (251)
Q Consensus        22 l~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~---~g~~~~~~~~~~~-~~i~~v~q~~~-------------   84 (251)
                      |++.+|++++|+||||||||||+|+|+|+.+|++|+|.+   +|+++.......+ +.+||++|.|.             
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~  243 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE  243 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence            456689999999999999999999999999999999999   8988754322222 36899999975             


Q ss_pred             ---CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCCh
Q psy7367          85 ---LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSG  135 (251)
Q Consensus        85 ---l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg  135 (251)
                         +|+++|+ ||+.|....+   ..+...++.++++.++|. +..++++.+||.
T Consensus       244 ~~~l~~~~~~-~n~~~~~~~~---~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse  294 (301)
T 1u0l_A          244 LKHYFKEFGD-KQCFFSDCNH---VDEPECGVKEAVENGEIAESRYENYVKMFYE  294 (301)
T ss_dssp             HGGGSTTSSS-CCCSSTTCCS---SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccc-ccCcCCCCcC---CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence               5888899 9988753211   122235688999999996 777888888885

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.63  E-value=1.7e-16  Score=126.48  Aligned_cols=91  Identities=14%  Similarity=0.268  Sum_probs=70.8

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCee--EEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHH
Q psy7367          16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG--TAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEE   93 (251)
Q Consensus        16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G--~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e   93 (251)
                      +|+++     +|+.++|+||||||||||++++++...+ +|  .+++++.++...                         
T Consensus        30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~-------------------------   78 (149)
T 2kjq_A           30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT-------------------------   78 (149)
T ss_dssp             HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred             HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence            55565     8999999999999999999999998876 46  455544332110                         


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q psy7367          94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE  173 (251)
Q Consensus        94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~  173 (251)
                                                                          +++.+|++|++|||++ +++..++.+++
T Consensus        79 ----------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~  105 (149)
T 2kjq_A           79 ----------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFS  105 (149)
T ss_dssp             ----------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHH
T ss_pred             ----------------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHH
Confidence                                                                2356899999999998 66666899999


Q ss_pred             HHHhhh-CCCe-EEEEeCC
Q psy7367         174 LLIKYK-KGRT-VILTTHY  190 (251)
Q Consensus       174 ~l~~l~-~g~t-iii~tHd  190 (251)
                      ++..+. +|++ +|++||.
T Consensus       106 li~~~~~~g~~~iiits~~  124 (149)
T 2kjq_A          106 IFNRFRNSGKGFLLLGSEY  124 (149)
T ss_dssp             HHHHHHHHTCCEEEEEESS
T ss_pred             HHHHHHHcCCcEEEEECCC
Confidence            998875 4787 8889884

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.63  E-value=3.6e-19  Score=162.94  Aligned_cols=168  Identities=11%  Similarity=0.041  Sum_probs=124.3

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhC------------CCCCCeeEEEEcceeCCCChHHh--hcce---EEEccCCCC
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMG------------MLPVSSGTAKIYNHDIRTDMTTI--RRSL---GVCPQYNAL   85 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~G------------l~~p~~G~i~~~g~~~~~~~~~~--~~~i---~~v~q~~~l   85 (251)
                      .+++|..++|+|+||||||||+|+|+|            ...|+.|.|.+.|..+.......  ++.+   .++++.+.+
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl   95 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   95 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence            567899999999999999999999999            66799999999875432100111  2223   477888998


Q ss_pred             CCCCCHHHHH--HHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCC--CEEEEeCCCC
Q psy7367          86 FDKLTVEEHM--WFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGS--RTVILDEPTS  161 (251)
Q Consensus        86 ~~~ltv~e~l--~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p--~llllDEPt~  161 (251)
                      +...+..|++  .|...++...         .++..++..+  +..+..+|++.            +|  ++.++|||+.
T Consensus        96 ~~~~s~~e~L~~~fl~~ir~~d---------~il~Vvd~~~--d~~i~~v~~~~------------dP~~di~ildeel~  152 (392)
T 1ni3_A           96 TKGASTGVGLGNAFLSHVRAVD---------AIYQVVRAFD--DAEIIHVEGDV------------DPIRDLSIIVDELL  152 (392)
T ss_dssp             CCCCCSSSSSCHHHHHHHTTCS---------EEEEEEECCC--TTCSSCCSSSS------------CHHHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHHHH---------HHHHHHhccc--cceeeeecccc------------CcchhhhhchhhhH
Confidence            8888876665  4443333211         1222222222  34555577764            89  9999999999


Q ss_pred             CCCHHHHHHHHHHHHhh-hC-CCeEEEEeCCHHHHHhhcCEEE-EeeCC-EEEeecCH
Q psy7367         162 GVDPYSRRSIWELLIKY-KK-GRTVILTTHYMDEADLLGDRIA-IIAAG-KLQCCGSS  215 (251)
Q Consensus       162 gLD~~~~~~l~~~l~~l-~~-g~tiii~tHd~~~~~~~~d~i~-~l~~G-~i~~~g~~  215 (251)
                      ++|+...+..++.+... .. |.||+  +|++..+..+|+++. +|++| +++..++.
T Consensus       153 ~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~  208 (392)
T 1ni3_A          153 IKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW  208 (392)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence            99999999999999987 54 77764  999999999999999 99999 88876653

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.62  E-value=8.5e-18  Score=148.17  Aligned_cols=126  Identities=13%  Similarity=0.037  Sum_probs=90.5

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHH-----
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYS-----   99 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~-----   99 (251)
                      .++.+++|.||+|||||||.+.|.+++.+. |      .       . ++.+.+|+|+..+++. +.++|+.+..     
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~-------~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l   92 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G-------G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL   92 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G-------G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C-------C-CceEEEeccccccCCh-HHHHHHhccccccch
Confidence            578999999999999999999999998763 2      0       0 3345666999988764 8889987752     


Q ss_pred             -HhcCCChHHHHHHHHHHHHHcCCC--------cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q psy7367         100 -QLKQVPKDLAQLEISNMIVDLGIP--------HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY  166 (251)
Q Consensus       100 -~~~~~~~~~~~~~~~~~l~~~~l~--------~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~  166 (251)
                       ..++.+.......+.+.++.+.-.        .....+...+||||+||+++|++...+|+|+|+|||++++|+.
T Consensus        93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~  168 (290)
T 1odf_A           93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI  168 (290)
T ss_dssp             GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred             hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence             112223222234566667776432        1234556799999999999984333399999999999999985

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.60  E-value=1.1e-19  Score=158.96  Aligned_cols=145  Identities=12%  Similarity=0.040  Sum_probs=107.0

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEEccCC-CCCCCCCH
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYN-ALFDKLTV   91 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~-~l~~~ltv   91 (251)
                      ..+++++++++++|  ++|+||||||||||+|+|+|...+  |.|.++|.++.. ......+.++++||.. ..++.+++
T Consensus        33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~  108 (274)
T 2x8a_A           33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF  108 (274)
T ss_dssp             HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence            45889999999999  999999999999999999999877  799999988743 2233456688889875 55666677


Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCC----------
Q psy7367          92 EEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTS----------  161 (251)
Q Consensus        92 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~----------  161 (251)
                      .|++......+..      ....      .+....++.+.+|||||+||+.+++|+.++|++|  |||+.          
T Consensus       109 ~Deid~~~~~r~~------~~~~------~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~  174 (274)
T 2x8a_A          109 FDEVDALCPRRSD------RETG------ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLF  174 (274)
T ss_dssp             EETCTTTCC---------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEE
T ss_pred             eehhhhhhcccCC------Ccch------HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEE
Confidence            7777553221110      0000      1234456678899999999999999999999985  99864          


Q ss_pred             --CCCHHHHHHHHHHHH
Q psy7367         162 --GVDPYSRRSIWELLI  176 (251)
Q Consensus       162 --gLD~~~~~~l~~~l~  176 (251)
                        --|...+..+++.+.
T Consensus       175 ~~~P~~~~r~~il~~~~  191 (274)
T 2x8a_A          175 VGLPPPADRLAILKTIT  191 (274)
T ss_dssp             CCSCCHHHHHHHHHHHT
T ss_pred             eCCcCHHHHHHHHHHHH
Confidence              347777777777654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.60  E-value=1.3e-17  Score=148.00  Aligned_cols=118  Identities=13%  Similarity=0.210  Sum_probs=72.5

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEE---cceeCCCChHHhhcceEEEccCCCCCC----CCCHHHH
Q psy7367          22 VNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI---YNHDIRTDMTTIRRSLGVCPQYNALFD----KLTVEEH   94 (251)
Q Consensus        22 l~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~---~g~~~~~~~~~~~~~i~~v~q~~~l~~----~ltv~e~   94 (251)
                      +++.+|++++|+||||||||||+|+|+|+.+|+.|+|.+   +|+.+.......+..++|++|.|.+..    .+|+ |+
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~  246 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE  246 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence            677899999999999999999999999999999999999   887765432222223799999997755    6899 88


Q ss_pred             HH--HHH-H-h------cC-CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHH
Q psy7367          95 MW--FYS-Q-L------KQ-VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRK  140 (251)
Q Consensus        95 l~--~~~-~-~------~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqr  140 (251)
                      +.  |.. . +      ++ ....+...++.++++.++|.+...+....|+.|++||
T Consensus       247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~  303 (307)
T 1t9h_A          247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR  303 (307)
T ss_dssp             HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence            83  321 1 1      11 1111223468899999999876656667777888773

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.57  E-value=5.7e-20  Score=153.06  Aligned_cols=153  Identities=14%  Similarity=0.112  Sum_probs=87.1

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCCC-------------CCeeEEEEcceeCCC-ChHHhhcceEEEccCCCCCCCCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGMLP-------------VSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALFDKLT   90 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-------------p~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~lt   90 (251)
                      ++|++++|+||||||||||+++|+|+++             |..|+  ++|.++.. ....+++.+   +|+..++. .+
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~-~~   75 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEH-AE   75 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEE-EE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEee-ee
Confidence            5799999999999999999999999875             56665  35554422 223333332   34443322 23


Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHH----HHHHHH-HHccCCCEEEEeCCCCCCCH
Q psy7367          91 VEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQR----KLSVAM-AFIGGSRTVILDEPTSGVDP  165 (251)
Q Consensus        91 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kq----rv~ia~-al~~~p~llllDEPt~gLD~  165 (251)
                      +.+|+      ++.+..    .+.++++.-.. ...+..+    .|-++    ++ .|+ +++.+|++++|||||+++|.
T Consensus        76 ~~~n~------~g~~~~----~i~~~~~~~~~-~~~~~~~----~g~~~~~~~~~-~~~~~~l~~p~~~ilde~~~~~d~  139 (198)
T 1lvg_A           76 FSGNL------YGTSKE----AVRAVQAMNRI-CVLDVDL----QGVRSIKKTDL-CPIYIFVQPPSLDVLEQRLRLRNT  139 (198)
T ss_dssp             ETTEE------EEEEHH----HHHHHHHTTCE-EEEECCH----HHHHHHTTSSC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred             ecCcc------CCCCHH----HHHHHHHcCCc-EEEECCH----HHHHHHHhcCC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence            33333      122222    23333332110 0000000    11111    11 455 78888899999999999999


Q ss_pred             HHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367         166 YSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAA  206 (251)
Q Consensus       166 ~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~  206 (251)
                      .+.+.+.+.|....++   +.++|.  .  ..+|+|+++++
T Consensus       140 ~~e~~i~~~l~~~~~~---~~~a~~--~--~~~D~iivnd~  173 (198)
T 1lvg_A          140 ETEESLAKRLAAARTD---MESSKE--P--GLFDLVIINDD  173 (198)
T ss_dssp             SCHHHHHHHHHHHHHH---TTGGGS--T--TTCSEEEECSS
T ss_pred             CCHHHHHHHHHHHHHH---HHHhhc--c--CCceEEEECCC
Confidence            9988898888776433   233451  1  56899888764

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=99.53  E-value=1.2e-14  Score=128.16  Aligned_cols=139  Identities=14%  Similarity=0.108  Sum_probs=98.1

Q ss_pred             EeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCC
Q psy7367           4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYN   83 (251)
Q Consensus         4 ~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~   83 (251)
                      +++++.|+. ..  ++++|+  +|++++++|+||+||||+++.|++++.+..|+|.+.+.++......            
T Consensus        80 ~~l~~~~~~-~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~------------  142 (295)
T 1ls1_A           80 EALKEALGG-EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR------------  142 (295)
T ss_dssp             HHHHHHTTS-SC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH------------
T ss_pred             HHHHHHHCC-CC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH------------
Confidence            345566743 32  788888  9999999999999999999999999999999999988876432110            


Q ss_pred             CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCC-CCC
Q psy7367          84 ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP-TSG  162 (251)
Q Consensus        84 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEP-t~g  162 (251)
                               +.+.                  .+.+..++.......  ..+..+.+|.+++.+...+++++|+||| +++
T Consensus       143 ---------~ql~------------------~~~~~~~l~~~~~~~--~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~  193 (295)
T 1ls1_A          143 ---------EQLR------------------LLGEKVGVPVLEVMD--GESPESIRRRVEEKARLEARDLILVDTAGRLQ  193 (295)
T ss_dssp             ---------HHHH------------------HHHHHHTCCEEECCT--TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSS
T ss_pred             ---------HHHH------------------HhcccCCeEEEEcCC--CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcc
Confidence                     0000                  012233544321100  1233345788999998899999999999 999


Q ss_pred             CCHHHHHHHHHHHHhhhCCCeEEEEe
Q psy7367         163 VDPYSRRSIWELLIKYKKGRTVILTT  188 (251)
Q Consensus       163 LD~~~~~~l~~~l~~l~~g~tiii~t  188 (251)
                      +|......+.++........+++++.
T Consensus       194 ~d~~~~~~l~~~~~~~~~~~~~lv~~  219 (295)
T 1ls1_A          194 IDEPLMGELARLKEVLGPDEVLLVLD  219 (295)
T ss_dssp             CCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred             ccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence            99998988888877765555555443

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.52  E-value=6.4e-16  Score=127.68  Aligned_cols=126  Identities=10%  Similarity=0.018  Sum_probs=77.3

Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh-HHhhcceEEEccCCCCCCCCCHHHHHHHHH
Q psy7367          21 NVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM-TTIRRSLGVCPQYNALFDKLTVEEHMWFYS   99 (251)
Q Consensus        21 sl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~   99 (251)
                      |+++++|++++|+||||||||||+++|+|+++    .+.+.+..+.... ...+..++|+||++.+|+.+++.+++.+..
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA   76 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence            57888999999999999999999999999964    5777776664322 223567999999988887777776654433


Q ss_pred             HhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy7367         100 QLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP  159 (251)
Q Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEP  159 (251)
                      .+.+.......+.+.++++. +.....+        +..+-+.-++....+|.+++++.|
T Consensus        77 ~~~~~~~~~~~~~i~~~l~~-g~~vi~d--------~~~~~~~~~~~~~~~~~~v~~~~~  127 (205)
T 3tr0_A           77 TIYERHYGTEKDWVLRQLKA-GRDVLLE--------IDWQGARQIRELFPPALSIFILPP  127 (205)
T ss_dssp             EETTEEEEEEHHHHHHHHHT-TCEEEEE--------CCHHHHHHHHHHCTTCEEEEEECS
T ss_pred             eeecccccchHHHHHHHHHc-CCeEEEE--------ECHHHHHHHHHhCCCcEEEEEECc
Confidence            22211110011234444443 2111111        234444555566677888888877

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=99.51  E-value=1.6e-15  Score=128.42  Aligned_cols=172  Identities=15%  Similarity=0.087  Sum_probs=92.5

Q ss_pred             cceeeee-eEEEeCCcEEEEEcCCCCcHHHHHH-HHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCH
Q psy7367          14 KLAVNGL-NVNFYEDQITSFLGHNGAGKTTTIS-MLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTV   91 (251)
Q Consensus        14 ~~il~~i-sl~i~~Ge~~~liG~NGaGKSTLlk-~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv   91 (251)
                      .+.|+.+ .--+++|++++|.||||||||||+. ++.+..++..+.+++...............+++.+|+......+++
T Consensus         9 ~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~   88 (247)
T 2dr3_A            9 IPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPYEEKGMFAM   88 (247)
T ss_dssp             CTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHHHHHTSEEE
T ss_pred             chhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCcEEE
Confidence            4567776 6789999999999999999999954 5555554444455554433211111112234444432110001111


Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCC--CHHH
Q psy7367          92 EEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI--GGSRTVILDEPTSGV--DPYS  167 (251)
Q Consensus        92 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~--~~p~llllDEPt~gL--D~~~  167 (251)
                      .+.          ...           .++.....+.....-+....+....++.++  .+|+++++|+|++.+  |+..
T Consensus        89 ~~~----------~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~  147 (247)
T 2dr3_A           89 VDA----------FTA-----------GIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAM  147 (247)
T ss_dssp             EEC----------STT-----------TTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGG
T ss_pred             Eec----------chh-----------hcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHH
Confidence            000          000           000000000011111112223233333333  589999999999988  6644


Q ss_pred             HHHHHHHHHhh-h-CCCeEEEEeCCHHH--------HHhhcCEEEEeeC
Q psy7367         168 RRSIWELLIKY-K-KGRTVILTTHYMDE--------ADLLGDRIAIIAA  206 (251)
Q Consensus       168 ~~~l~~~l~~l-~-~g~tiii~tHd~~~--------~~~~~d~i~~l~~  206 (251)
                      ...++..+.++ + .|+|||+++|....        ++..||.++.|+.
T Consensus       148 ~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          148 ARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            55555555554 3 48999999998776        5678999999974

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.50  E-value=5.4e-17  Score=135.61  Aligned_cols=140  Identities=16%  Similarity=0.138  Sum_probs=82.8

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhCCCCC---CeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHH
Q psy7367          24 FYEDQITSFLGHNGAGKTTTISMLMGMLPV---SSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ  100 (251)
Q Consensus        24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~  100 (251)
                      .++|++++|+||||||||||+++|+|+++|   +.|.|.++|..+....   ...++..+.                   
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~---~~~~~~~~~-------------------   76 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRL---LEPRGLLPR-------------------   76 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHH---HGGGTCGGG-------------------
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHH---HHHhccccc-------------------
Confidence            578999999999999999999999999985   4677777665542110   011111100                   


Q ss_pred             hcCCChHHHHHHHHHHHHHc----CCC-cccCCCCCcCChhHHHHHHHH-HHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy7367         101 LKQVPKDLAQLEISNMIVDL----GIP-HKRTSLANTLSGGMQRKLSVA-MAFIGGSRTVILDEPTSGVDPYSRRSIWEL  174 (251)
Q Consensus       101 ~~~~~~~~~~~~~~~~l~~~----~l~-~~~~~~~~~LSgG~kqrv~ia-~al~~~p~llllDEPt~gLD~~~~~~l~~~  174 (251)
                       .+.+.......+.+++..+    .+. +..+ ....+|+||+||+++| ++++.++.++++|||..           ..
T Consensus        77 -~~~~~~~~~~~~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~  143 (208)
T 3c8u_A           77 -KGAPETFDFEGFQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RD  143 (208)
T ss_dssp             -TTSGGGBCHHHHHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GG
T ss_pred             -CCCCchhhHHHHHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HH
Confidence             0000000001111222222    111 1122 2345799999999998 88888888888888841           11


Q ss_pred             HHhhhCCCeEEEEeCCHHH-HHhhcCE
Q psy7367         175 LIKYKKGRTVILTTHYMDE-ADLLGDR  200 (251)
Q Consensus       175 l~~l~~g~tiii~tHd~~~-~~~~~d~  200 (251)
                      +.+.  --.+++++++.+. +.+++.|
T Consensus       144 l~~~--~d~~i~vd~~~~~~~~R~~~R  168 (208)
T 3c8u_A          144 LTAI--WDVSIRLEVPMADLEARLVQR  168 (208)
T ss_dssp             GGGT--CSEEEEECCCHHHHHHHHHHH
T ss_pred             HHHh--cCEEEEEeCCHHHHHHHHHHH
Confidence            1111  2367888888876 5666666

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.49  E-value=4.8e-19  Score=150.23  Aligned_cols=184  Identities=11%  Similarity=-0.026  Sum_probs=76.6

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh-CCCCCCeeEEEEcceeCCCCh--HHhhcceEEEccCCCCCCCCC
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLM-GMLPVSSGTAKIYNHDIRTDM--TTIRRSLGVCPQYNALFDKLT   90 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~-Gl~~p~~G~i~~~g~~~~~~~--~~~~~~i~~v~q~~~l~~~lt   90 (251)
                      .+..+++||++++|++++|+||||||||||+++|+ |++++.     +.+.+.....  ......++|.|+++..|..++
T Consensus        14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~-----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~   88 (231)
T 3lnc_A           14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNI-----VKSVSVTTRAARKGEKEGKDYYFVDREEFLRLC   88 (231)
T ss_dssp             --------CCEECCCEEEEECSCC----CHHHHHHC----CE-----EECCCEESSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred             hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCc-----ccccccCCCCCCccccCCCeEEEecHHHhhhhh
Confidence            35689999999999999999999999999999999 998652     2232221100  001123456666554444333


Q ss_pred             HHHHHHHH----HHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHH-HHH-HHHccCCCEEEEeCCCCCCC
Q psy7367          91 VEEHMWFY----SQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKL-SVA-MAFIGGSRTVILDEPTSGVD  164 (251)
Q Consensus        91 v~e~l~~~----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv-~ia-~al~~~p~llllDEPt~gLD  164 (251)
                      +.+++...    ...++.+..    .++++++.-. .-..+-.+. -....++++ .-+ ..++..|+..+++|++.+.|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~-~vild~~~~-g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~  162 (231)
T 3lnc_A           89 SNGEIIEHAEVFGNFYGVPRK----NLEDNVDKGV-STLLVIDWQ-GAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRR  162 (231)
T ss_dssp             HTTCEEEEEEETTEEEEEECT----THHHHHHHTC-EEEEECCHH-HHHHHHHHSGGGEEEEEEECSCHHHHHHC-----
T ss_pred             hcCceehhhhhccccCCCCHH----HHHHHHHcCC-eEEEEcCHH-HHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcC
Confidence            33332211    111121111    1333333311 111110000 011113332 111 23456777888889999998


Q ss_pred             HHHHHHHHHHHHhh----h--CCCeEEEEeCCHHHHHhhcCEEEEeeCCE
Q psy7367         165 PYSRRSIWELLIKY----K--KGRTVILTTHYMDEADLLGDRIAIIAAGK  208 (251)
Q Consensus       165 ~~~~~~l~~~l~~l----~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~  208 (251)
                      ..+.+.+.+.+...    .  ....+++++|+++++.+-+++++-...++
T Consensus       163 ~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~  212 (231)
T 3lnc_A          163 ADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMK  212 (231)
T ss_dssp             ---------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTB
T ss_pred             CCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhc
Confidence            88877777666542    1  24678888888888776666554433344

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.48  E-value=2.2e-14  Score=127.26  Aligned_cols=99  Identities=22%  Similarity=0.201  Sum_probs=77.4

Q ss_pred             eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHH
Q psy7367          19 GLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFY   98 (251)
Q Consensus        19 ~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~   98 (251)
                      .++++.++|++++|+|||||||||+++.|++.+++..|+|.+.+.|.....                     ..+.    
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~---------------------a~eq----  150 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA---------------------AIEQ----  150 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH---------------------HHHH----
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH---------------------HHHH----
Confidence            456677899999999999999999999999999998899998877653210                     0111    


Q ss_pred             HHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHH---HHHHHHccCCCEEEEeCCCC
Q psy7367          99 SQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKL---SVAMAFIGGSRTVILDEPTS  161 (251)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv---~ia~al~~~p~llllDEPt~  161 (251)
                                    +..+++.+++..     +..+|+|+.|++   ++++|+..+|+++|+|||..
T Consensus       151 --------------L~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~  197 (306)
T 1vma_A          151 --------------LKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR  197 (306)
T ss_dssp             --------------HHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred             --------------HHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence                          223445556643     346789999999   89999999999999999975

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=99.47  E-value=1e-13  Score=122.32  Aligned_cols=139  Identities=17%  Similarity=0.238  Sum_probs=94.4

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV  104 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~  104 (251)
                      .+|++++++|||||||||+++.|++.+.+++|                 +++.++.+++.   ..++.|++..+...   
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-----------------~~V~lv~~D~~---r~~a~eqL~~~~~~---  159 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-----------------KKIAFITTDTY---RIAAVEQLKTYAEL---  159 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-----------------CCEEEEECCCS---STTHHHHHHHHHTT---
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-----------------CEEEEEecCcc---cchHHHHHHHHHHh---
Confidence            47999999999999999999999999988777                 23556655542   23556666543322   


Q ss_pred             ChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh---C-
Q psy7367         105 PKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK---K-  180 (251)
Q Consensus       105 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~---~-  180 (251)
                                     +++.....     .+ ...-+.++++  +.+|+++|+|  |+|+|+.....+.++..-+.   . 
T Consensus       160 ---------------~gl~~~~~-----~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~  214 (296)
T 2px0_A          160 ---------------LQAPLEVC-----YT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSI  214 (296)
T ss_dssp             ---------------TTCCCCBC-----SS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTE
T ss_pred             ---------------cCCCeEec-----CC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCC
Confidence                           23321111     12 2333555554  4999999999  89999877666655544433   2 


Q ss_pred             CCeEEE-EeCCHHHHHhhcCEEEEeeCCEEEe
Q psy7367         181 GRTVIL-TTHYMDEADLLGDRIAIIAAGKLQC  211 (251)
Q Consensus       181 g~tiii-~tHd~~~~~~~~d~i~~l~~G~i~~  211 (251)
                      +.++++ +||..+.+.++|+++..+..+.++.
T Consensus       215 ~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl  246 (296)
T 2px0_A          215 QSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF  246 (296)
T ss_dssp             EEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred             eEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence            344555 5999999999999877777777765

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=99.42  E-value=4.6e-15  Score=139.72  Aligned_cols=174  Identities=12%  Similarity=0.095  Sum_probs=110.0

Q ss_pred             eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhC--CCCCCeeEEEEcceeCCCC-hHHhhcceEEEccCCCCCCCCCHHHHH
Q psy7367          19 GLNVNFYEDQITSFLGHNGAGKTTTISMLMG--MLPVSSGTAKIYNHDIRTD-MTTIRRSLGVCPQYNALFDKLTVEEHM   95 (251)
Q Consensus        19 ~isl~i~~Ge~~~liG~NGaGKSTLlk~l~G--l~~p~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~l~~~ltv~e~l   95 (251)
                      .+++++.++..+.|.|++||||||++++|..  +.+++.|++.+.+.|.+.. ...+ ..   +   |.+..  +|.++.
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~-~~---l---Phl~~--~Vvtd~  229 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVY-EG---I---PHLLT--EVVTDM  229 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGG-TT---C---TTBSS--SCBCSH
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhh-cc---C---Ccccc--eeecCH
Confidence            5788899999999999999999999999876  6677778888877776431 1111 11   0   11110  111222


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHcCCCcccC---CCCCcCChhHHHHH----------HHHHHHccCCC-EEEEeCCCC
Q psy7367          96 WFYSQLKQVPKDLAQLEISNMIVDLGIPHKRT---SLANTLSGGMQRKL----------SVAMAFIGGSR-TVILDEPTS  161 (251)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~LSgG~kqrv----------~ia~al~~~p~-llllDEPt~  161 (251)
                      ............+++++. +++..+|+.+...   +....+|+||+|+.          .+|+++...|. ++++||+++
T Consensus       230 ~~a~~~L~~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~  308 (512)
T 2ius_A          230 KDAANALRWCVNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFAD  308 (512)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHH
Confidence            111111111134455554 7788888875432   22346899988753          35667778898 899999999


Q ss_pred             CCCHHHHHHHHHHHHhh----hC-CCeEEEEeCCHH-------HHHhhcCEEEE
Q psy7367         162 GVDPYSRRSIWELLIKY----KK-GRTVILTTHYMD-------EADLLGDRIAI  203 (251)
Q Consensus       162 gLD~~~~~~l~~~l~~l----~~-g~tiii~tHd~~-------~~~~~~d~i~~  203 (251)
                      .+|.. ...+.+.+.++    +. |.++|++||++.       ....+.+||.+
T Consensus       309 ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l  361 (512)
T 2ius_A          309 LMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF  361 (512)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred             HHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence            88833 33444554443    33 899999999987       44566677765

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.42  E-value=3.7e-18  Score=148.69  Aligned_cols=135  Identities=10%  Similarity=0.040  Sum_probs=93.6

Q ss_pred             eEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEEccCC
Q psy7367           5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYN   83 (251)
Q Consensus         5 ~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~   83 (251)
                      ++.+.|+ ...+++++++++++|  ++|+||||||||||+++|++...  .|.|.+++.++.. .....++.++++||..
T Consensus        54 ~l~~~~~-~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~  128 (278)
T 1iy2_A           54 EIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETA  128 (278)
T ss_dssp             HHHHHHH-CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHH-CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3444553 356889999999999  89999999999999999999875  7899998876521 1112334577888875


Q ss_pred             C-CCCCCCHHHHHHHHHHhcCC----ChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367          84 A-LFDKLTVEEHMWFYSQLKQV----PKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE  158 (251)
Q Consensus        84 ~-l~~~ltv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE  158 (251)
                      . ..+.+++.|++.........    ...+..+.+..+             +.+|||||+||+.+++|+.++|++  +|+
T Consensus       129 ~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l-------------l~~lsgg~~~~~~i~~a~t~~p~~--ld~  193 (278)
T 1iy2_A          129 KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-------------LVEMDGFEKDTAIVVMAATNRPDI--LDP  193 (278)
T ss_dssp             HTSCSEEEEEETHHHHHCC--------CHHHHHHHHHH-------------HHHHTTCCTTCCEEEEEEESCTTS--SCH
T ss_pred             HhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHH-------------HHHHhCCCCCCCEEEEEecCCchh--CCH
Confidence            3 56667888888543321110    111222223332             346899999999999999999987  566


Q ss_pred             C
Q psy7367         159 P  159 (251)
Q Consensus       159 P  159 (251)
                      +
T Consensus       194 ~  194 (278)
T 1iy2_A          194 A  194 (278)
T ss_dssp             H
T ss_pred             h
Confidence            5

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.41  E-value=4.1e-14  Score=132.38  Aligned_cols=60  Identities=23%  Similarity=0.210  Sum_probs=52.9

Q ss_pred             EEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCC
Q psy7367           3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR   66 (251)
Q Consensus         3 i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~   66 (251)
                      +.+++...   ..+|+++||+|++ ++++|+|||||||||||++|+|+++|++|+|.++|+++.
T Consensus         9 l~~l~~~~---~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~   68 (483)
T 3euj_A            9 FRSLTLIN---WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA   68 (483)
T ss_dssp             EEEEEEEE---ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred             eeEEEEec---cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence            34555432   4589999999999 999999999999999999999999999999999998874

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=99.40  E-value=4.4e-13  Score=120.88  Aligned_cols=145  Identities=17%  Similarity=0.203  Sum_probs=85.1

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK  102 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~  102 (251)
                      -+++|+++.|.||||||||||+..++.......|.+.|-..+..... ...+.+|+-+++..++.               
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~-~~a~~lG~~~~~l~i~~---------------  120 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDP-EYAKKLGVDTDSLLVSQ---------------  120 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH-HHHHHTTCCGGGCEEEC---------------
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCH-HHHHHcCCCHHHeEEec---------------
Confidence            58899999999999999999988877544333333333221111110 11111222111111000               


Q ss_pred             CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccC--CCEEEEeCCCCCC----------CH---HH
Q psy7367         103 QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGG--SRTVILDEPTSGV----------DP---YS  167 (251)
Q Consensus       103 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~--p~llllDEPt~gL----------D~---~~  167 (251)
                                                   ..+.  .|-+.++++++.+  |+++++|||++.+          |+   ..
T Consensus       121 -----------------------------~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q  169 (349)
T 2zr9_A          121 -----------------------------PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQ  169 (349)
T ss_dssp             -----------------------------CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHH
T ss_pred             -----------------------------CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHH
Confidence                                         1111  2334577777654  9999999999998          33   12


Q ss_pred             HHHHHHHHHhh----hC-CCeEEEEeCCHH----------------HHHhhcCEEEEeeCCEEEeecC
Q psy7367         168 RRSIWELLIKY----KK-GRTVILTTHYMD----------------EADLLGDRIAIIAAGKLQCCGS  214 (251)
Q Consensus       168 ~~~l~~~l~~l----~~-g~tiii~tHd~~----------------~~~~~~d~i~~l~~G~i~~~g~  214 (251)
                      .+.+.+.++++    ++ ++|||+++|...                .+..+||.++.++.++....|+
T Consensus       170 ~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~  237 (349)
T 2zr9_A          170 ARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT  237 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred             HHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence            22344444443    33 899999999643                2567899999998877665543

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=99.39  E-value=1.6e-13  Score=127.63  Aligned_cols=180  Identities=8%  Similarity=0.041  Sum_probs=116.0

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCee-EEEEcceeCCCChHHhhcce-EEEccCCCCCCCCCH
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG-TAKIYNHDIRTDMTTIRRSL-GVCPQYNALFDKLTV   91 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~i-~~v~q~~~l~~~ltv   91 (251)
                      ...|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+.+...  ..+..++ +...       ....
T Consensus       190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~--~~l~~r~~~~~~-------~~~~  260 (454)
T 2r6a_A          190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA--QQLVMRMLCAEG-------NINA  260 (454)
T ss_dssp             CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH--HHHHHHHHHHHH-------TCCH
T ss_pred             cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHHHHc-------CCCH
Confidence            4578888888999999999999999999999999987665445 56665544321  1121111 1000       0011


Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCCCH----
Q psy7367          92 EEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI--GGSRTVILDEPTSGVDP----  165 (251)
Q Consensus        92 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~--~~p~llllDEPt~gLD~----  165 (251)
                       +.+.    ...... ....++.++++.++..+..-.....+|.++.+  +.++.++  .+|+++++|+|+...++    
T Consensus       261 -~~l~----~g~l~~-~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~  332 (454)
T 2r6a_A          261 -QNLR----TGKLTP-EDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSK  332 (454)
T ss_dssp             -HHHH----TSCCCH-HHHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC--
T ss_pred             -HHHh----cCCCCH-HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCC
Confidence             1110    011222 22345556666665444433345689999886  5566665  68999999999987743    


Q ss_pred             ----HHHHHHHHHHHhhh-C-CCeEEEEeC---------C--HH--------HHHhhcCEEEEeeCCEEE
Q psy7367         166 ----YSRRSIWELLIKYK-K-GRTVILTTH---------Y--MD--------EADLLGDRIAIIAAGKLQ  210 (251)
Q Consensus       166 ----~~~~~l~~~l~~l~-~-g~tiii~tH---------d--~~--------~~~~~~d~i~~l~~G~i~  210 (251)
                          .....+.+.|+.+. + +++||+++|         +  +.        .++..||.|++|+.++..
T Consensus       333 ~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~~  402 (454)
T 2r6a_A          333 ENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYY  402 (454)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC-
T ss_pred             CCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccccc
Confidence                33456666777764 3 999999999         3  22        577889999999877653

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.39  E-value=1.2e-17  Score=143.26  Aligned_cols=151  Identities=11%  Similarity=0.051  Sum_probs=101.4

Q ss_pred             eEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEEccCC
Q psy7367           5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYN   83 (251)
Q Consensus         5 ~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~   83 (251)
                      ++.+.|+ ...+++++++++++|  ++|+||||||||||+++|++...  .|.+.+++.++.. .....++.++++||..
T Consensus        30 ~l~~~~~-~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~  104 (254)
T 1ixz_A           30 EIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETA  104 (254)
T ss_dssp             HHHHHHH-CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHH-CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3444553 356899999999999  99999999999999999999875  7899998876521 1112234577888875


Q ss_pred             C-CCCCCCHHHHHHHHHHhcCC----ChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367          84 A-LFDKLTVEEHMWFYSQLKQV----PKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE  158 (251)
Q Consensus        84 ~-l~~~ltv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE  158 (251)
                      . ..+.+++.|++.........    ...+..+.+..+             ..+|||||+||+.+++|+.++|++  +|+
T Consensus       105 ~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~l-------------l~~l~g~~~~~~~i~~a~t~~p~~--ld~  169 (254)
T 1ixz_A          105 KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-------------LVEMDGFEKDTAIVVMAATNRPDI--LDP  169 (254)
T ss_dssp             TTSSSEEEEEETHHHHHC---------CHHHHHHHHHH-------------HHHHHTCCTTCCEEEEEEESCGGG--SCG
T ss_pred             HhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHH-------------HHHHhCCCCCCCEEEEEccCCchh--CCH
Confidence            3 45667778888543322111    112222223333             346889999999999999999987  677


Q ss_pred             CCC------------CCCHHHHHHHHHHH
Q psy7367         159 PTS------------GVDPYSRRSIWELL  175 (251)
Q Consensus       159 Pt~------------gLD~~~~~~l~~~l  175 (251)
                      +..            -.|...+..+++..
T Consensus       170 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~  198 (254)
T 1ixz_A          170 ALLRPGRFDRQIAIDAPDVKGREQILRIH  198 (254)
T ss_dssp             GGGSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred             HHcCCCcCCeEEeeCCcCHHHHHHHHHHH
Confidence            643            23566666665533

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=99.31  E-value=1.9e-14  Score=122.44  Aligned_cols=61  Identities=20%  Similarity=0.211  Sum_probs=43.7

Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-C--------hHHhhcceEEEccC
Q psy7367          21 NVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-D--------MTTIRRSLGVCPQY   82 (251)
Q Consensus        21 sl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~--------~~~~~~~i~~v~q~   82 (251)
                      +++|.+ ++++|+|||||||||||++|+|++.|++|+|.++|.++.. .        ....+..++|++|+
T Consensus        22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~   91 (227)
T 1qhl_A           22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD   91 (227)
T ss_dssp             EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred             EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence            566777 8999999999999999999999999999999999988721 1        11235689999974

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=99.29  E-value=2e-14  Score=138.20  Aligned_cols=157  Identities=11%  Similarity=0.128  Sum_probs=102.3

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCe-eEEEEcceeCCCChHHhhcceEEEccCC---------
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSS-GTAKIYNHDIRTDMTTIRRSLGVCPQYN---------   83 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~-G~i~~~g~~~~~~~~~~~~~i~~v~q~~---------   83 (251)
                      ..+++++++.+.+|+.+.|+||||+|||||+++|+++.++.. |.+.+++.+...    ....++++|+..         
T Consensus        47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~----~~p~i~~~p~g~~~~~~e~~~  122 (604)
T 3k1j_A           47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE----NMPRIKTVPACQGRRIVEKYR  122 (604)
T ss_dssp             HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT----TSCEEEEEETTHHHHHHHHHH
T ss_pred             hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc----cCCcEEEEecchHHHHHHHHH
Confidence            568999999999999999999999999999999999998887 888888766532    234578887653         


Q ss_pred             -------------CCCCCCCHHHHHHHHHH-hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHcc
Q psy7367          84 -------------ALFDKLTVEEHMWFYSQ-LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIG  149 (251)
Q Consensus        84 -------------~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~  149 (251)
                                   ..+..+++.+|+..... ..+.+.  .........+.+|.-.......+.+|+|++|++..++....
T Consensus       123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~--v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~g~~~~a  200 (604)
T 3k1j_A          123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPF--IDATGAHAGALLGDVRHDPFQSGGLGTPAHERVEPGMIHRA  200 (604)
T ss_dssp             HHHHHHTCC-----------CCCEEEECCTTCSSCCE--EECTTCCHHHHHCEECCCCC----CCCCGGGGEECCHHHHT
T ss_pred             HhhccchhhhhhcccccccccccceeeccccCCCCCE--EEcCCCCHHhcCceEEechhhcCCccccccccccCceeeec
Confidence                         11222222222211000 000000  00000011122332222222346799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q psy7367         150 GSRTVILDEPTSGVDPYSRRSIWELLIK  177 (251)
Q Consensus       150 ~p~llllDEPt~gLD~~~~~~l~~~l~~  177 (251)
                      ++.+|++||... |++..+..+++.|.+
T Consensus       201 ~~gvL~LDEi~~-l~~~~q~~Ll~~Le~  227 (604)
T 3k1j_A          201 HKGVLFIDEIAT-LSLKMQQSLLTAMQE  227 (604)
T ss_dssp             TTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred             CCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence            999999999988 899999999999975

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.26  E-value=3.2e-13  Score=110.68  Aligned_cols=134  Identities=14%  Similarity=0.194  Sum_probs=74.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCC-----------CeeEEEEcceeCCC---ChHHhhcceEEEccCCC-------CCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGMLPV-----------SSGTAKIYNHDIRT---DMTTIRRSLGVCPQYNA-------LFD   87 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~~p-----------~~G~i~~~g~~~~~---~~~~~~~~i~~v~q~~~-------l~~   87 (251)
                      .++|+|+||||||||++.++|...|           ++|+|.++|+++..   ......+..+++++...       .++
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d  110 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD  110 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence            6899999999999999999998765           58999999876421   00000111122222110       011


Q ss_pred             CC--CHHHHHHHHHH-hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q psy7367          88 KL--TVEEHMWFYSQ-LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD  164 (251)
Q Consensus        88 ~l--tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD  164 (251)
                      ..  ...+++..... +.....  ....+..++..+++.           .-..+.+.+|++++.+|+++++|  ||++|
T Consensus       111 ~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~-----------~~~~~~~~~a~~l~~~~~~~~ld--~Sald  175 (191)
T 1oix_A          111 IAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLR-----------HLRAVPTDEARAFAEKNGLSFIE--TSALD  175 (191)
T ss_dssp             TTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGG-----------GGCCSCHHHHHHHHHHTTCEEEE--CCTTT
T ss_pred             CcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccc-----------cccccCHHHHHHHHHHcCCEEEE--EeCCC
Confidence            00  01122211100 000000  000000011111111           11123467899999999999999  99999


Q ss_pred             HHHHHHHHHHHHh
Q psy7367         165 PYSRRSIWELLIK  177 (251)
Q Consensus       165 ~~~~~~l~~~l~~  177 (251)
                      ..+...+++.|.+
T Consensus       176 ~~~v~~l~~~l~~  188 (191)
T 1oix_A          176 STNVEAAFQTILT  188 (191)
T ss_dssp             CTTHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            9999999998865

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.17  E-value=3.8e-13  Score=110.65  Aligned_cols=36  Identities=17%  Similarity=0.222  Sum_probs=31.9

Q ss_pred             HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q psy7367         141 LSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY  178 (251)
Q Consensus       141 v~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l  178 (251)
                      ...|++++.+|++.++|  ||++|+.+...+++.|.+.
T Consensus       130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~  165 (199)
T 2f9l_A          130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE  165 (199)
T ss_dssp             HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence            45689999999999999  9999999999999988653

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.14  E-value=3.5e-12  Score=115.59  Aligned_cols=137  Identities=13%  Similarity=0.163  Sum_probs=86.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCC-----------CCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHH---
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGMLP-----------VSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEH---   94 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~~-----------p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~---   94 (251)
                      +++|+|++|||||||++.|+|...           |+.|.+.++|.++.     +....|++.+.+.    ..+...   
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~-----l~DT~G~i~~lp~----~lve~f~~t  251 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM-----LVDTVGFIRGIPP----QIVDAFFVT  251 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE-----EEECCCBCSSCCG----GGHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE-----EEeCCCchhcCCH----HHHHHHHHH
Confidence            399999999999999999999876           67789999886541     1123444443221    112111   


Q ss_pred             HHHHHH------hcCC--Ch---HHHHHHHHHHHHHcCCCccc----CCCCCcCChhHHHHHHHH----HHH-ccCCCEE
Q psy7367          95 MWFYSQ------LKQV--PK---DLAQLEISNMIVDLGIPHKR----TSLANTLSGGMQRKLSVA----MAF-IGGSRTV  154 (251)
Q Consensus        95 l~~~~~------~~~~--~~---~~~~~~~~~~l~~~~l~~~~----~~~~~~LSgG~kqrv~ia----~al-~~~p~ll  154 (251)
                      +.....      ....  +.   ......+.++++.+++.+..    ..++..+|++++|++.++    +++ ..+|++ 
T Consensus       252 l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-  330 (364)
T 2qtf_A          252 LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV-  330 (364)
T ss_dssp             HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred             HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence            110000      0111  11   12223456778887765432    345777898998988877    555 444454 


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHhh
Q psy7367         155 ILDEPTSGVDPYSRRSIWELLIKY  178 (251)
Q Consensus       155 llDEPt~gLD~~~~~~l~~~l~~l  178 (251)
                         +|+|++|..+...+++.|.+.
T Consensus       331 ---~~~SA~~g~gi~~L~~~I~~~  351 (364)
T 2qtf_A          331 ---IPISALKRTNLELLRDKIYQL  351 (364)
T ss_dssp             ---EECBTTTTBSHHHHHHHHHHH
T ss_pred             ---EEEECCCCcCHHHHHHHHHHH
Confidence               899999999999999998775

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.13  E-value=2.8e-12  Score=106.08  Aligned_cols=78  Identities=12%  Similarity=-0.031  Sum_probs=51.2

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHH
Q psy7367          16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHM   95 (251)
Q Consensus        16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l   95 (251)
                      ++.+-.++.++|++++|+||||||||||+++|++.+    |.+.+++.++.......+..+++++|++..++.+++.+++
T Consensus        18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   93 (200)
T 4eun_A           18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEW   93 (200)
T ss_dssp             ----------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHH
Confidence            444445677899999999999999999999999976    8999999887532222233568888876555555555555


Q ss_pred             HH
Q psy7367          96 WF   97 (251)
Q Consensus        96 ~~   97 (251)
                      ..
T Consensus        94 ~~   95 (200)
T 4eun_A           94 MD   95 (200)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=99.11  E-value=7.5e-11  Score=106.46  Aligned_cols=147  Identities=14%  Similarity=0.095  Sum_probs=91.9

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEE-EEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHh
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA-KIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL  101 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~  101 (251)
                      -+++|+++.|.||||||||||+..++....+..|.+ ++++.....  ..+.+++++.+|+..+....++.+.+....  
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~--~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~--  132 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD--PVYAKNLGVDLKSLLISQPDHGEQALEIVD--  132 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC--HHHHHHHTCCGGGCEEECCSSHHHHHHHHH--
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc--hHHHHHcCCchhhhhhhhccCHHHHHHHHH--
Confidence            589999999999999999999999999877777766 555554322  123456777777766555566665553321  


Q ss_pred             cCCChHHHHHHHHHHHHHcCC-----CcccCCCC-CcCCh--hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q psy7367         102 KQVPKDLAQLEISNMIVDLGI-----PHKRTSLA-NTLSG--GMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE  173 (251)
Q Consensus       102 ~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~-~~LSg--G~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~  173 (251)
                                   .+++....     +......+ .++++  |++|++..||++.                     +++.
T Consensus       133 -------------~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la---------------------~~L~  178 (356)
T 3hr8_A          133 -------------ELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMS---------------------QALR  178 (356)
T ss_dssp             -------------HHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHH---------------------HHHH
T ss_pred             -------------HHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHH---------------------HHHH
Confidence                         11111111     11111111 23333  5555556666554                     4556


Q ss_pred             HHHhh-hC-CCeEEEEeCC----------------HHHHHhhcCEEEEeeCC
Q psy7367         174 LLIKY-KK-GRTVILTTHY----------------MDEADLLGDRIAIIAAG  207 (251)
Q Consensus       174 ~l~~l-~~-g~tiii~tHd----------------~~~~~~~~d~i~~l~~G  207 (251)
                      .|..+ ++ +.+||++.|-                -..++.++|.++.++..
T Consensus       179 ~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k~  230 (356)
T 3hr8_A          179 KIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRG  230 (356)
T ss_dssp             HHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEEE
T ss_pred             HHHHHHHhcCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEec
Confidence            66665 33 8999999887                23366788999999853

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=99.10  E-value=1.2e-13  Score=125.74  Aligned_cols=138  Identities=15%  Similarity=0.113  Sum_probs=86.1

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCC-CCCCCCHHH
Q psy7367          15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNA-LFDKLTVEE   93 (251)
Q Consensus        15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~-l~~~ltv~e   93 (251)
                      .+++++++++++|++++|+||||||||||+++|+|.   .+|.+..-.  ....  .....++++||... ++++.+...
T Consensus       157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~~~--~~~~~lg~~~q~~~~l~dd~~~~~  229 (377)
T 1svm_A          157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LPLD--RLNFELGVAIDQFLVVFEDVKGTG  229 (377)
T ss_dssp             HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SCTT--THHHHHGGGTTCSCEEETTCCCST
T ss_pred             HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--ccch--hHHHHHHHhcchhHHHHHHHHHHH
Confidence            588999999999999999999999999999999985   467776511  1111  11223667777653 233333222


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHH---HcCCC-------------cccCCCCCcCChhHHHHHHHHHHHccCCCEEE-E
Q psy7367          94 HMWFYSQLKQVPKDLAQLEISNMIV---DLGIP-------------HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI-L  156 (251)
Q Consensus        94 ~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~-------------~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll-l  156 (251)
                      .+  ...+...........+...++   .+.+.             ...+.....+++|++||+..+.+++..|++++ |
T Consensus       230 ~~--~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyL  307 (377)
T 1svm_A          230 GE--SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCL  307 (377)
T ss_dssp             TT--TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHH
T ss_pred             HH--HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEE
Confidence            11  000000000000112333333   11111             23455677899999999999888899999988 9


Q ss_pred             eCCCC
Q psy7367         157 DEPTS  161 (251)
Q Consensus       157 DEPt~  161 (251)
                      |+|+.
T Consensus       308 d~~~~  312 (377)
T 1svm_A          308 ERSEF  312 (377)
T ss_dssp             HTCTH
T ss_pred             eCCHH
Confidence            99987

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.00  E-value=3.5e-11  Score=103.35  Aligned_cols=66  Identities=23%  Similarity=0.186  Sum_probs=52.3

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh---CCCCCCeeEEE--------EcceeCCC--ChHHhhcceEEEcc
Q psy7367          15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLM---GMLPVSSGTAK--------IYNHDIRT--DMTTIRRSLGVCPQ   81 (251)
Q Consensus        15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~---Gl~~p~~G~i~--------~~g~~~~~--~~~~~~~~i~~v~q   81 (251)
                      .++++.+   ++|++++|+|||||||||++++|+   |+..|++|.++        .+|.++..  ....+++.+++++|
T Consensus        18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   94 (252)
T 4e22_A           18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV   94 (252)
T ss_dssp             -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred             hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence            3455544   789999999999999999999999   99999999999        88888743  34566788999997


Q ss_pred             CC
Q psy7367          82 YN   83 (251)
Q Consensus        82 ~~   83 (251)
                      ..
T Consensus        95 ~~   96 (252)
T 4e22_A           95 SQ   96 (252)
T ss_dssp             EE
T ss_pred             cC
Confidence            53

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.99  E-value=9.5e-12  Score=118.35  Aligned_cols=43  Identities=23%  Similarity=0.224  Sum_probs=38.4

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCee-EEE-EcceeC
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG-TAK-IYNHDI   65 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G-~i~-~~g~~~   65 (251)
                      .+++|++++|+|+||||||||+++|+|.+.|++| ++. ++|.++
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV  409 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence            5789999999999999999999999999999987 785 887654

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.98  E-value=2.2e-10  Score=92.71  Aligned_cols=148  Identities=17%  Similarity=0.191  Sum_probs=88.0

Q ss_pred             EEEeEEEEeCCCccee--eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcce--eC-CCCh----HHh
Q psy7367           2 AIQNLSKRFPNGKLAV--NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH--DI-RTDM----TTI   72 (251)
Q Consensus         2 ~i~~l~~~y~~~~~il--~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~--~~-~~~~----~~~   72 (251)
                      .++.|...   +...+  +++++++.+| +++|+||||||||||+++|.+++.+..|.....+.  ++ ....    ...
T Consensus         3 ~i~~l~i~---nf~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~   78 (182)
T 3kta_A            3 YIEKLELK---GFKSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAK   78 (182)
T ss_dssp             EEEEEEEE---SBGGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCS
T ss_pred             eEEEEEEe---CeEeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCc
Confidence            45566554   13457  8899999999 99999999999999999999998887664322221  11 1100    012


Q ss_pred             hcceEEEccCCCC-C-C---CCCHHHHHHHH----HHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHH
Q psy7367          73 RRSLGVCPQYNAL-F-D---KLTVEEHMWFY----SQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSV  143 (251)
Q Consensus        73 ~~~i~~v~q~~~l-~-~---~ltv~e~l~~~----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~i  143 (251)
                      +..|.++||++.- + +   .+++...+.-.    ..+.+..  ...+.+.++++.+++.+..   +.-++.|+.+++. 
T Consensus        79 ~~~v~~~f~~~~~~~~~~~~~~~i~r~~~~~~~~~~~i~g~~--~~~~~~~~~l~~~~l~~~~---~~~~~qg~~~~l~-  152 (182)
T 3kta_A           79 YAEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGRR--ATRSEILDILTAAMISPDG---YNIVLQGDITKFI-  152 (182)
T ss_dssp             CEEEEEEEECTTCCSSSSSSEEEEEEEECTTSCEEEEETTEE--ECHHHHHHHHHHTTCCTTC---TTEECTTCTTHHH-
T ss_pred             eEEEEEEEeCCCcccccCCcEEEEEEEEEeCCcEEEEECCeE--cCHHHHHHHHHHcCCCCCC---CEEEEcccHHHHH-
Confidence            4578999997632 1 1   12222111000    0011111  1134677889999987532   2457777777764 


Q ss_pred             HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q psy7367         144 AMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK  177 (251)
Q Consensus       144 a~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~  177 (251)
                                        -++|..++.+++.+..
T Consensus       153 ------------------~~~~~~r~~~ld~~~g  168 (182)
T 3kta_A          153 ------------------KMSPLERRLLIDDISG  168 (182)
T ss_dssp             ------------------HSCHHHHHHHHHHHHT
T ss_pred             ------------------hCCHHHHHHHHHHHHC
Confidence                              2356777777766643

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.97  E-value=1.1e-10  Score=104.11  Aligned_cols=80  Identities=14%  Similarity=0.054  Sum_probs=62.2

Q ss_pred             eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh-----HHh-----hcceEEE-ccCCCC
Q psy7367          17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM-----TTI-----RRSLGVC-PQYNAL   85 (251)
Q Consensus        17 l~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~-----~~~-----~~~i~~v-~q~~~l   85 (251)
                      +++++|++++|++++|+|+||+||||++..|++.+.+..|+|.+.+.|+....     ..+     +..+.++ +|....
T Consensus        95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~  174 (320)
T 1zu4_A           95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA  174 (320)
T ss_dssp             -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred             ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence            37899999999999999999999999999999999999999999988875422     223     4678999 676554


Q ss_pred             CCCCCHHHHHH
Q psy7367          86 FDKLTVEEHMW   96 (251)
Q Consensus        86 ~~~ltv~e~l~   96 (251)
                      .+..++++++.
T Consensus       175 ~p~~~~~~~l~  185 (320)
T 1zu4_A          175 DPASVVFDAIK  185 (320)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            44434444443

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.97  E-value=3.7e-11  Score=103.50  Aligned_cols=51  Identities=18%  Similarity=0.229  Sum_probs=36.3

Q ss_pred             CEEEeE-EEEeCCCcceeeeeeEEEeC---CcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367           1 MAIQNL-SKRFPNGKLAVNGLNVNFYE---DQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus         1 l~i~~l-~~~y~~~~~il~~isl~i~~---Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ++++|+ +++|+++..+|+++||+|.+   |++++|+|++||||||+.++|++.+
T Consensus        18 l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           18 LETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             --------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            468899 99993347899999999999   9999999999999999999999855

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.96  E-value=5.2e-11  Score=98.44  Aligned_cols=127  Identities=16%  Similarity=0.226  Sum_probs=77.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHH
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDL  108 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~  108 (251)
                      +++|+|||||||||+.++|+++     |...++..+       +.+.+.   +     +.                 .  
T Consensus         4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~-------~~~~~~---~-----~~-----------------~--   44 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADV-------VAREVV---A-----KD-----------------S--   44 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHH-------HHHHTT---C-----SS-----------------C--
T ss_pred             EEEEECCCCCCHHHHHHHHHHC-----CCcccchHH-------HHHHHc---c-----CC-----------------h--
Confidence            6899999999999999999994     444554322       111110   0     00                 0  


Q ss_pred             HHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEe
Q psy7367         109 AQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTT  188 (251)
Q Consensus       109 ~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~t  188 (251)
                        ..+.++.+.+|....       .|.|+.+|..++..+..+|+.+..+  .+.++|..+..+.+.+... .+.+||+.+
T Consensus        45 --~~~~~i~~~~g~~~~-------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~  112 (206)
T 1jjv_A           45 --PLLSKIVEHFGAQIL-------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVV  112 (206)
T ss_dssp             --HHHHHHHHHHCTTCC-------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEEC
T ss_pred             --HHHHHHHHHhCHHHh-------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEe
Confidence              123344555554322       3678888999988888877644332  3456677777776666544 355889999


Q ss_pred             CCHHHH--HhhcCEEEEeeC
Q psy7367         189 HYMDEA--DLLGDRIAIIAA  206 (251)
Q Consensus       189 Hd~~~~--~~~~d~i~~l~~  206 (251)
                      |.+.+.  ...||++++++.
T Consensus       113 ~~l~e~~~~~~~d~vi~l~~  132 (206)
T 1jjv_A          113 PLLIENKLTALCDRILVVDV  132 (206)
T ss_dssp             TTTTTTTCGGGCSEEEEEEC
T ss_pred             chhhhcCcHhhCCEEEEEEC
Confidence            988776  678999998854

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.95  E-value=6.5e-10  Score=100.08  Aligned_cols=126  Identities=13%  Similarity=0.097  Sum_probs=84.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP  105 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~  105 (251)
                      ..-.++++|+||+|||||++.++|.. +..|     +.+...    ....++.+.+...               .     
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~-----~~~~~t----~~~~~~~~~~~~~---------------~-----  215 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAK-PEIA-----SYPFTT----RGINVGQFEDGYF---------------R-----  215 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSC-CEEE-----CCTTCS----SCEEEEEEEETTE---------------E-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC-CccC-----CCCCee----eceeEEEEEecCc---------------e-----
Confidence            44589999999999999999999965 3211     111111    0112333333210               0     


Q ss_pred             hHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe-CCCCCCCHHHHHHHHHHHHhhhCCCeE
Q psy7367         106 KDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD-EPTSGVDPYSRRSIWELLIKYKKGRTV  184 (251)
Q Consensus       106 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD-EPt~gLD~~~~~~l~~~l~~l~~g~ti  184 (251)
                                 +..++.....+.++.++|++++|++. +.+...++-++++| +|++++|......+++.+.+...+..+
T Consensus       216 -----------~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~pi  283 (357)
T 2e87_A          216 -----------YQIIDTPGLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPF  283 (357)
T ss_dssp             -----------EEEEECTTTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCE
T ss_pred             -----------EEEEeCCCccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCE
Confidence                       11122223334567789999998876 66666788889999 999999999988888888776447788


Q ss_pred             EEEe--CCHHH
Q psy7367         185 ILTT--HYMDE  193 (251)
Q Consensus       185 ii~t--Hd~~~  193 (251)
                      |++.  ||+..
T Consensus       284 ilV~NK~Dl~~  294 (357)
T 2e87_A          284 LVVINKIDVAD  294 (357)
T ss_dssp             EEEECCTTTCC
T ss_pred             EEEEECcccCC
Confidence            8888  88743

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=98.95  E-value=7.3e-10  Score=109.35  Aligned_cols=74  Identities=12%  Similarity=0.155  Sum_probs=61.1

Q ss_pred             CCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHHhhh-CCCeEEEE-eCCHHHHHhhcCE
Q psy7367         127 TSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTS-GVDPYSRRSIWELLIKYK-KGRTVILT-THYMDEADLLGDR  200 (251)
Q Consensus       127 ~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~-gLD~~~~~~l~~~l~~l~-~g~tiii~-tHd~~~~~~~~d~  200 (251)
                      +..+..+|.|+.+|..++.+++.+++++|+|||.. +||......+++.+.... ...+|+++ ||+.+.+..+++.
T Consensus       185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~  261 (773)
T 2xau_A          185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFND  261 (773)
T ss_dssp             TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTS
T ss_pred             CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcC
Confidence            44577899999999999999999999999999996 999887777776666554 35677774 9999888888764

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.94  E-value=7.2e-12  Score=117.88  Aligned_cols=129  Identities=12%  Similarity=0.050  Sum_probs=89.6

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-hHHhhcceEEEccCCC-CCCCCCH
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MTTIRRSLGVCPQYNA-LFDKLTV   91 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~-l~~~ltv   91 (251)
                      ..+++++++.+++|  +.|+||||+|||||+++|++...  .+.+.+++.++... .....+.+..+||... ..+.+.+
T Consensus        53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~  128 (499)
T 2dhr_A           53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF  128 (499)
T ss_dssp             GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEE
T ss_pred             hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEE
Confidence            45788999999999  99999999999999999999874  78899998876431 1122344667787753 3455566


Q ss_pred             HHHHHHHHHhcC----CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q psy7367          92 EEHMWFYSQLKQ----VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTS  161 (251)
Q Consensus        92 ~e~l~~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~  161 (251)
                      .|++......+.    ....+..+.+..++.             +||||++|+..+++|..++|++  ||||..
T Consensus       129 IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~-------------~Ldg~~~~~~viviAatn~p~~--LD~aLl  187 (499)
T 2dhr_A          129 IDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-------------EMDGFEKDTAIVVMAATNRPDI--LDPALL  187 (499)
T ss_dssp             EECGGGTCCCSSSSTTTSSHHHHHHHHHHHH-------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred             EehHHHHHHhhccCcCCCcHHHHHHHHHHHH-------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence            666643221111    112233333444443             4788999999999999999987  898865

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.94  E-value=2.8e-10  Score=93.57  Aligned_cols=60  Identities=12%  Similarity=0.056  Sum_probs=40.1

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCee-EEEEcceeCCCChHHhhcceEEEccCCC
Q psy7367          22 VNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG-TAKIYNHDIRTDMTTIRRSLGVCPQYNA   84 (251)
Q Consensus        22 l~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~i~~v~q~~~   84 (251)
                      +++++|++++|+|||||||||++++|++++.|+.| .+..   ............++|+||++.
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~   61 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISM---TTRQMREGEVDGVDYFFKTRD   61 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCE---ECSCCCTTCCBTTTBEECCHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEeccc---ccCCCCCCccCCCceEEcCHH
Confidence            46889999999999999999999999999977766 3321   111111111234778887654

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.90  E-value=2.9e-09  Score=99.62  Aligned_cols=114  Identities=19%  Similarity=0.220  Sum_probs=75.6

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHH
Q psy7367          15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEH   94 (251)
Q Consensus        15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~   94 (251)
                      ..++++++.+++|  +.|+||+|+|||||+|++++....                     .+.++.- ..+.. +     
T Consensus        39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~---------------------~f~~is~-~~~~~-~-----   88 (476)
T 2ce7_A           39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV---------------------PFFHISG-SDFVE-L-----   88 (476)
T ss_dssp             HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC---------------------CEEEEEG-GGTTT-C-----
T ss_pred             HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC---------------------CeeeCCH-HHHHH-H-----
Confidence            3566777888887  789999999999999999983210                     0111100 00000 0     


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCC----------CCCCC
Q psy7367          95 MWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP----------TSGVD  164 (251)
Q Consensus        95 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEP----------t~gLD  164 (251)
                                                        .++  ++++++|..+++|....|.+|++||+          ++|.|
T Consensus        89 ----------------------------------~~g--~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~  132 (476)
T 2ce7_A           89 ----------------------------------FVG--VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGH  132 (476)
T ss_dssp             ----------------------------------CTT--HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------
T ss_pred             ----------------------------------Hhc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCc
Confidence                                              000  15678888899999999999999999          34677


Q ss_pred             HHHHHHHHHHHHhhh-----CCCeEEEEeCCHHHH
Q psy7367         165 PYSRRSIWELLIKYK-----KGRTVILTTHYMDEA  194 (251)
Q Consensus       165 ~~~~~~l~~~l~~l~-----~g~tiii~tHd~~~~  194 (251)
                      +.....+.+++..+.     .+..||.+||..+.+
T Consensus       133 ~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L  167 (476)
T 2ce7_A          133 DEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL  167 (476)
T ss_dssp             CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred             HHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence            777777777776652     378899999998654

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.87  E-value=5.5e-11  Score=98.22  Aligned_cols=61  Identities=20%  Similarity=0.166  Sum_probs=47.2

Q ss_pred             EeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEE--EEcceeCC
Q psy7367           4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA--KIYNHDIR   66 (251)
Q Consensus         4 ~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i--~~~g~~~~   66 (251)
                      +|+++.++ ...+.+..++..++|++++|+|||||||||++++|++.+. ..|.+  +++|.++.
T Consensus         3 ~~~~~~~~-~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~   65 (200)
T 3uie_A            3 TNIKWHEC-SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR   65 (200)
T ss_dssp             -------C-CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred             CCCccccc-ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence            57777775 4678889999999999999999999999999999999887 67888  88876653

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.75  E-value=9.5e-09  Score=91.99  Aligned_cols=49  Identities=12%  Similarity=0.012  Sum_probs=38.6

Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh----CCCeEEEEeCCHHHHHhhc
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK----KGRTVILTTHYMDEADLLG  198 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~----~g~tiii~tHd~~~~~~~~  198 (251)
                      .+|.++++||+... |+.....+..++.++.    .+.++|++||+.+....+.
T Consensus       124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~  176 (389)
T 1fnn_A          124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD  176 (389)
T ss_dssp             TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred             CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence            56889999999876 9888888888887653    4789999999986554443

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.75  E-value=5.6e-11  Score=107.09  Aligned_cols=172  Identities=15%  Similarity=0.169  Sum_probs=87.7

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhC--CCCCCeeEEEEcceeCCCC-hHHhhcceEEEccCCCC-CCCC
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMG--MLPVSSGTAKIYNHDIRTD-MTTIRRSLGVCPQYNAL-FDKL   89 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~G--l~~p~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~l-~~~l   89 (251)
                      ..+|++++++++   .++|+|++|||||||++.|+|  ++++.+|.++.....+... ........+..++.+.. +.+.
T Consensus        24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (360)
T 3t34_A           24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF  100 (360)
T ss_dssp             SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred             ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence            358999999999   899999999999999999999  6677777665443322100 00001233444433211 1111


Q ss_pred             -CHHHHHHHHHH-h----cCCChHHHHHHH----HHHHHHcCCCcccCC-CCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367          90 -TVEEHMWFYSQ-L----KQVPKDLAQLEI----SNMIVDLGIPHKRTS-LANTLSGGMQRKLSVAMAFIGGSRTVILDE  158 (251)
Q Consensus        90 -tv~e~l~~~~~-~----~~~~~~~~~~~~----~~~l~~~~l~~~~~~-~~~~LSgG~kqrv~ia~al~~~p~llllDE  158 (251)
                       .+.+.+.-... .    .+.+.....-.+    ..-+..+++....+. ...+.+..++|+..++++.+.+|+++|+.-
T Consensus       101 ~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv  180 (360)
T 3t34_A          101 AAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAI  180 (360)
T ss_dssp             HHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEe
Confidence             11111111000 0    000000000000    000111122221111 123467888999999999999999888885


Q ss_pred             CCCCCCHHHHHHHHHHHHhhh-CC-CeEEEEeC
Q psy7367         159 PTSGVDPYSRRSIWELLIKYK-KG-RTVILTTH  189 (251)
Q Consensus       159 Pt~gLD~~~~~~l~~~l~~l~-~g-~tiii~tH  189 (251)
                      ..+..|... ...+++++++. .| .+|+++|.
T Consensus       181 ~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK  212 (360)
T 3t34_A          181 SPANQDLAT-SDAIKISREVDPSGDRTFGVLTK  212 (360)
T ss_dssp             EETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred             ecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence            444455443 44566777764 34 57777775

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.75  E-value=2.9e-09  Score=103.42  Aligned_cols=132  Identities=14%  Similarity=0.107  Sum_probs=83.7

Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CeeEEEEcceeCCC-ChHHhhcceEEEccCCCCCCCCCHHHHHHH
Q psy7367          21 NVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV--SSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWF   97 (251)
Q Consensus        21 sl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~   97 (251)
                      |++++++..++|+|+||||||||++.|++...+  ..|+| .+|..+.. ...+.++.+++.+|...++.. ++..|+  
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~nl--   78 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVFL--   78 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEEE--
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEEE--
Confidence            567889999999999999999999999976654  67888 66766643 334556778888877655432 211111  


Q ss_pred             HHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCC-cCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy7367          98 YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLAN-TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI  176 (251)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~  176 (251)
                                                  .|.+.. .++     .......-..++-++++| |+.|+++..+. +++.+.
T Consensus        79 ----------------------------iDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~-~~~~~~  123 (665)
T 2dy1_A           79 ----------------------------LDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER-AWTVAE  123 (665)
T ss_dssp             ----------------------------EECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH-HHHHHH
T ss_pred             ----------------------------EeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH-HHHHHH
Confidence                                        111000 010     112222235678899999 99999988763 333332


Q ss_pred             hhhCCCeEEEEeCCHHH
Q psy7367         177 KYKKGRTVILTTHYMDE  193 (251)
Q Consensus       177 ~l~~g~tiii~tHd~~~  193 (251)
                      .  .+.++|++.|.++.
T Consensus       124 ~--~~ip~ilv~NKiD~  138 (665)
T 2dy1_A          124 R--LGLPRMVVVTKLDK  138 (665)
T ss_dssp             H--TTCCEEEEEECGGG
T ss_pred             H--ccCCEEEEecCCch
Confidence            2  47888899998875

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.72  E-value=4.7e-10  Score=90.17  Aligned_cols=38  Identities=21%  Similarity=0.293  Sum_probs=33.4

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR   66 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~   66 (251)
                      .+|++++|+|||||||||++++|++.+    |.+.+++.++.
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~   43 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH   43 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence            468999999999999999999999865    78889887664

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=98.68  E-value=2.2e-08  Score=89.70  Aligned_cols=107  Identities=9%  Similarity=0.148  Sum_probs=68.9

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHH
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEE   93 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e   93 (251)
                      ...|+.+.--+.+|+++.|.|++|+|||||+.-++.......                  ..+.|+.-      .++..+
T Consensus        33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g------------------~~Vl~fSl------Ems~~q   88 (338)
T 4a1f_A           33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDD------------------RGVAVFSL------EMSAEQ   88 (338)
T ss_dssp             CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT------------------CEEEEEES------SSCHHH
T ss_pred             ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC------------------CeEEEEeC------CCCHHH
Confidence            346777766899999999999999999999988875432211                  12334321      244433


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCC
Q psy7367          94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSG  162 (251)
Q Consensus        94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~g  162 (251)
                      ...               ++......+++....   -+.||.++++|+..|...+.+++++|.|+|...
T Consensus        89 l~~---------------Rlls~~~~v~~~~l~---~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s  139 (338)
T 4a1f_A           89 LAL---------------RALSDLTSINMHDLE---SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR  139 (338)
T ss_dssp             HHH---------------HHHHHHHCCCHHHHH---HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC
T ss_pred             HHH---------------HHHHHhhCCCHHHHh---cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc
Confidence            321               111111111211121   147899999999999999999999999998654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.64  E-value=1e-07  Score=88.03  Aligned_cols=124  Identities=15%  Similarity=0.124  Sum_probs=72.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP  105 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~  105 (251)
                      ++.+++++|||||||||++..|++.+.+..++|.+-+-++...                     ...+.+...       
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~---------------------~a~eqL~~~-------  147 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP---------------------AAYDQLLQL-------  147 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH---------------------HHHHHHHHH-------
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch---------------------hHHHHHHHH-------
Confidence            5789999999999999999999999888778887765553210                     112222222       


Q ss_pred             hHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC-CC--CCHHHHHHHHHHHHhhhC-C
Q psy7367         106 KDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT-SG--VDPYSRRSIWELLIKYKK-G  181 (251)
Q Consensus       106 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt-~g--LD~~~~~~l~~~l~~l~~-g  181 (251)
                                 .+..++......  ...+.-.--+-+++.+...+++++|+|+|. .+  .|+....++.++.+.... .
T Consensus       148 -----------~~~~gv~~~~~~--~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~  214 (433)
T 3kl4_A          148 -----------GNQIGVQVYGEP--NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDD  214 (433)
T ss_dssp             -----------HHTTTCCEECCT--TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSE
T ss_pred             -----------HHhcCCceeecc--ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcc
Confidence                       122222211100  001111111234555555688888888876 34  777777777776665543 4


Q ss_pred             CeEEEEeCC
Q psy7367         182 RTVILTTHY  190 (251)
Q Consensus       182 ~tiii~tHd  190 (251)
                      ..+++.+|.
T Consensus       215 vlLVlDa~~  223 (433)
T 3kl4_A          215 VILVIDASI  223 (433)
T ss_dssp             EEEEEEGGG
T ss_pred             eEEEEeCcc
Confidence            455555543

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.63  E-value=9.1e-09  Score=83.50  Aligned_cols=37  Identities=16%  Similarity=0.145  Sum_probs=31.0

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CeeEEEEc
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGMLPV-SSGTAKIY   61 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-~~G~i~~~   61 (251)
                      .+|++++|+||||||||||+++|+++.++ ..|.|...
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~t   40 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHT   40 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeecc
Confidence            36899999999999999999999998864 55666543

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.58  E-value=7.8e-09  Score=92.94  Aligned_cols=42  Identities=24%  Similarity=0.182  Sum_probs=36.4

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR   66 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~   66 (251)
                      +++.+++|+|++|||||||++.|+|.+.|..|+|.+.+.++.
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~  113 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS  113 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence            357899999999999999999999998888888888776653

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.58  E-value=1.3e-08  Score=85.89  Aligned_cols=42  Identities=14%  Similarity=0.113  Sum_probs=36.9

Q ss_pred             eeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeC
Q psy7367          20 LNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI   65 (251)
Q Consensus        20 isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~   65 (251)
                      -+.+.++|++++|.|+||||||||+++|+|+    .|+|.+.+++.
T Consensus        13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~   54 (230)
T 2vp4_A           13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV   54 (230)
T ss_dssp             CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred             ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence            3456689999999999999999999999998    68899988764

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.57  E-value=2.8e-08  Score=81.75  Aligned_cols=38  Identities=26%  Similarity=0.163  Sum_probs=24.7

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ..+++|+||++++|++++|+||+||||||+.+.|++.+
T Consensus        12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            56999999999999999999999999999999999765

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.55  E-value=1.1e-08  Score=84.47  Aligned_cols=43  Identities=19%  Similarity=0.136  Sum_probs=38.4

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeC
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI   65 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~   65 (251)
                      ..++|++++|+|+||||||||+++|++++++..|.|.+.+.+.
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~   60 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD   60 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence            4678999999999999999999999999988889998876664

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.54  E-value=5.7e-11  Score=105.94  Aligned_cols=48  Identities=21%  Similarity=0.236  Sum_probs=40.8

Q ss_pred             cceeeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEc
Q psy7367          14 KLAVNGLNVNFYEDQI--TSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY   61 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~--~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~   61 (251)
                      ..+++.++..++.|++  +.+.||+|+||||+++++++.+.+..+.+.+.
T Consensus        31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~   80 (340)
T 1sxj_C           31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVL   80 (340)
T ss_dssp             HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEE
T ss_pred             HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEE
Confidence            5688999999999999  99999999999999999999876665544443

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.48  E-value=6.4e-09  Score=86.74  Aligned_cols=57  Identities=21%  Similarity=0.244  Sum_probs=45.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhCCC---CCCeeEEEE--------cceeCCC--ChHHhhcceEEEccCC
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMGML---PVSSGTAKI--------YNHDIRT--DMTTIRRSLGVCPQYN   83 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~Gl~---~p~~G~i~~--------~g~~~~~--~~~~~~~~i~~v~q~~   83 (251)
                      +.+++|+||+||||||+.++|++.+   .++.|.+..        .|.++..  ....+++.+++++|++
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   74 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST   74 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence            5689999999999999999998765   788899887        6766542  2234567899998864

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.48  E-value=1e-08  Score=91.32  Aligned_cols=53  Identities=19%  Similarity=0.271  Sum_probs=41.9

Q ss_pred             EEEeCCCcceeeeeeEEEeCCc------EEEEEcCCCCcHHHHHHHHhCCCC--CCeeEEEE
Q psy7367           7 SKRFPNGKLAVNGLNVNFYEDQ------ITSFLGHNGAGKTTTISMLMGMLP--VSSGTAKI   60 (251)
Q Consensus         7 ~~~y~~~~~il~~isl~i~~Ge------~~~liG~NGaGKSTLlk~l~Gl~~--p~~G~i~~   60 (251)
                      ++.|+ +..+|++++..+.+++      ++||+||||||||||+++|++++.  |++|.+.+
T Consensus        67 ~~~~~-~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~  127 (321)
T 3tqc_A           67 SFYVT-ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV  127 (321)
T ss_dssp             HHHHH-HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred             HHhhc-chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence            33453 3567888888888877      999999999999999999999987  45565443

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.47  E-value=7.3e-08  Score=79.95  Aligned_cols=36  Identities=14%  Similarity=0.115  Sum_probs=30.5

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CeeEEEE
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGMLPV-SSGTAKI   60 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-~~G~i~~   60 (251)
                      ++|++++|+||||||||||++.|++.++| ..+.+..
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~   42 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISM   42 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCE
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEec
Confidence            58999999999999999999999999887 4444433

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.46  E-value=8.3e-09  Score=90.84  Aligned_cols=150  Identities=15%  Similarity=0.122  Sum_probs=81.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCC---CC--CCCCHHHHHHHHHH
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNA---LF--DKLTVEEHMWFYSQ  100 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~---l~--~~ltv~e~l~~~~~  100 (251)
                      ++.+++|+|++|||||||++.|.|...      .+.......   ...+..++++++..   ++  |..-....-.+...
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~------~i~s~~~~t---Tr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~   77 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKI------SITSRKAQT---TRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRL   77 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSE------EECCCCSSC---CSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCc------cccCCCCCc---ceeeEEEEEEECCeeEEEEECcCCCccchhhHHHH
Confidence            345899999999999999999999631      111111111   11234566665431   11  11110000000000


Q ss_pred             hcCCChHHHHHHHHHHHHHcCCCcc-cCCCCCcCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHHH-HHHHHHHHH
Q psy7367         101 LKQVPKDLAQLEISNMIVDLGIPHK-RTSLANTLSGGMQRKLSVAMAFI--GGSRTVILDEPTSGVDPYS-RRSIWELLI  176 (251)
Q Consensus       101 ~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~kqrv~ia~al~--~~p~llllDEPt~gLD~~~-~~~l~~~l~  176 (251)
                      +.        ..+...++..++--+ .+.  ..+|.|++   .+++++.  ..|.++++    +.+|... +..+.+.+.
T Consensus        78 ~~--------~~~~~~l~~~D~vl~Vvd~--~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~  140 (301)
T 1ega_A           78 MN--------KAASSSIGDVELVIFVVEG--TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQ  140 (301)
T ss_dssp             HT--------CCTTSCCCCEEEEEEEEET--TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHH
T ss_pred             HH--------HHHHHHHhcCCEEEEEEeC--CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHH
Confidence            00        001111222222111 221  23888886   4566665  78999998    7899876 677778888


Q ss_pred             hhhC--CC--eEEEEeCCHHHHHhhcCEE
Q psy7367         177 KYKK--GR--TVILTTHYMDEADLLGDRI  201 (251)
Q Consensus       177 ~l~~--g~--tiii~tHd~~~~~~~~d~i  201 (251)
                      ++.+  +.  .+.+++|+.+-+..++|.+
T Consensus       141 ~l~~~~~~~~~i~iSA~~g~~v~~l~~~i  169 (301)
T 1ega_A          141 FLASQMNFLDIVPISAETGLNVDTIAAIV  169 (301)
T ss_dssp             HHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred             HHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence            7743  43  6677788877666666654

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.44  E-value=5.2e-08  Score=80.86  Aligned_cols=32  Identities=22%  Similarity=0.459  Sum_probs=26.9

Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          21 NVNFYEDQITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        21 sl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      |+...+|++++|+||||||||||++.|++..+
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            45556899999999999999999999999875

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=98.43  E-value=2e-07  Score=82.70  Aligned_cols=28  Identities=29%  Similarity=0.357  Sum_probs=25.6

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -+++|+++.|.||+|||||||+..++..
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~  130 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVN  130 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence            5899999999999999999999888763

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=98.42  E-value=8.3e-08  Score=85.95  Aligned_cols=28  Identities=25%  Similarity=0.159  Sum_probs=25.8

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -+++|+++.|.||+|||||||+..++..
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999999988874

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.41  E-value=6.2e-08  Score=86.21  Aligned_cols=29  Identities=21%  Similarity=0.326  Sum_probs=25.4

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCCCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGMLPV   53 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p   53 (251)
                      ..+..+.|.||+|+|||||++.+++...+
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~   71 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK   71 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            45789999999999999999999987654

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.40  E-value=2.5e-09  Score=95.81  Aligned_cols=60  Identities=13%  Similarity=0.047  Sum_probs=50.2

Q ss_pred             EEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCC
Q psy7367           6 LSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR   66 (251)
Q Consensus         6 l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~   66 (251)
                      +.+.|+ ...+++++++.+.+|.+++|+|+||||||||++.|++.+.+..|+|.+-+.+..
T Consensus        36 ~~~~~~-~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~   95 (341)
T 2p67_A           36 PRHQAL-STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS   95 (341)
T ss_dssp             HHHHHH-HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             chhhhH-HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence            334443 246889999999999999999999999999999999999888888888776653

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.39  E-value=2e-07  Score=76.77  Aligned_cols=33  Identities=30%  Similarity=0.243  Sum_probs=29.1

Q ss_pred             eeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          20 LNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        20 isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      +--++++|.+++|+|++||||||++++|++.++
T Consensus        14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~   46 (207)
T 2qt1_A           14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP   46 (207)
T ss_dssp             CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            344678899999999999999999999999864

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.34  E-value=5.3e-07  Score=83.33  Aligned_cols=67  Identities=7%  Similarity=0.178  Sum_probs=44.7

Q ss_pred             cCCCEEEEeCCCCCCCH-HHHHHHHHHHHhhh-CCCeEEEEeCCH-HHHHhhcCEEEE-eeCCEEEeecCH
Q psy7367         149 GGSRTVILDEPTSGVDP-YSRRSIWELLIKYK-KGRTVILTTHYM-DEADLLGDRIAI-IAAGKLQCCGSS  215 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~-~~~~~l~~~l~~l~-~g~tiii~tHd~-~~~~~~~d~i~~-l~~G~i~~~g~~  215 (251)
                      .+|++|++||+..-.+. ..+..++..+..+. .|..||++||+. ..+..+.+++.- +..|.++...++
T Consensus       193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p  263 (440)
T 2z4s_A          193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP  263 (440)
T ss_dssp             TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred             CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence            48999999999876654 67888999998875 588999999973 322222222222 345655554443

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=98.33  E-value=8.5e-07  Score=78.36  Aligned_cols=131  Identities=12%  Similarity=0.134  Sum_probs=81.2

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHH
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEE   93 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e   93 (251)
                      ...|+.+.--+++|+++.|.|++|+|||||+..++.-..- .      |           ..+.|+.-      .++..+
T Consensus        55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~------g-----------~~vl~~sl------E~s~~~  110 (315)
T 3bh0_A           55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-N------D-----------DVVNLHSL------EMGKKE  110 (315)
T ss_dssp             CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-T------T-----------CEEEEEES------SSCHHH
T ss_pred             hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-c------C-----------CeEEEEEC------CCCHHH
Confidence            4467777767999999999999999999998887742110 0      0           12444432      245444


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q psy7367          94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE  173 (251)
Q Consensus        94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~  173 (251)
                      ...=               +......+++....+.. ..||.++++|+..|...+.++++++.|+|...     ...+..
T Consensus       111 l~~R---------------~~~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~  169 (315)
T 3bh0_A          111 NIKR---------------LIVTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWS  169 (315)
T ss_dssp             HHHH---------------HHHHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHH
T ss_pred             HHHH---------------HHHHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHH
Confidence            3321               11111111211222111 23899999999999999999999999998643     334555


Q ss_pred             HHHhhh-C-CCe--EEEEeC
Q psy7367         174 LLIKYK-K-GRT--VILTTH  189 (251)
Q Consensus       174 ~l~~l~-~-g~t--iii~tH  189 (251)
                      .++++. + +..  +|++-|
T Consensus       170 ~i~~l~~~~~~~~~lVVID~  189 (315)
T 3bh0_A          170 KTRQTKRKNPGKRVIVMIDY  189 (315)
T ss_dssp             HHHHHHHTSSSCCEEEEEEC
T ss_pred             HHHHHHHhcCCCCeEEEEeC
Confidence            555552 3 666  887755

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.32  E-value=1.3e-06  Score=75.72  Aligned_cols=71  Identities=14%  Similarity=0.001  Sum_probs=44.6

Q ss_pred             hhHHHHHHHHHHHccCCCEEEEeCCCCCCCH----------HHHHHHHHHHHhhh-----CCCeEEEEeCCHHH----HH
Q psy7367         135 GGMQRKLSVAMAFIGGSRTVILDEPTSGVDP----------YSRRSIWELLIKYK-----KGRTVILTTHYMDE----AD  195 (251)
Q Consensus       135 gG~kqrv~ia~al~~~p~llllDEPt~gLD~----------~~~~~l~~~l~~l~-----~g~tiii~tHd~~~----~~  195 (251)
                      ++++.+..++.+...+|.+|++||+.+.++.          .....++..+....     .+..||.+|++.+.    +.
T Consensus        98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~  177 (297)
T 3b9p_A           98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAAL  177 (297)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHH
Confidence            5666777788888889999999999776553          23334455554432     13567788887532    22


Q ss_pred             hhcCEEEEee
Q psy7367         196 LLGDRIAIIA  205 (251)
Q Consensus       196 ~~~d~i~~l~  205 (251)
                      +-+++.+.+.
T Consensus       178 ~R~~~~i~~~  187 (297)
T 3b9p_A          178 RRFTKRVYVS  187 (297)
T ss_dssp             HHCCEEEECC
T ss_pred             hhCCeEEEeC
Confidence            3456655543

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=98.30  E-value=4.9e-06  Score=69.95  Aligned_cols=41  Identities=12%  Similarity=0.225  Sum_probs=30.4

Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhC---CCeEEEEeC
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKK---GRTVILTTH  189 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~---g~tiii~tH  189 (251)
                      ..|+++|+..+.+.++......+..++..+..   ..++|+.||
T Consensus       111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK  154 (239)
T 3lxx_A          111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR  154 (239)
T ss_dssp             TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred             CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence            47899999999888888776666665554421   358888888

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=98.28  E-value=9.3e-07  Score=69.76  Aligned_cols=44  Identities=20%  Similarity=0.391  Sum_probs=31.9

Q ss_pred             EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367           2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus         2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      .++.|...-   ..-+++.++++.+| +.+|+|||||||||++.+|.-
T Consensus         2 ~i~~l~i~n---f~~~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A            2 KLERVTVKN---FRSHSDTVVEFKEG-INLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             EEEEEEEES---BTTBSSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEEeC---cccCcceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence            455555531   11245667777765 999999999999999999873

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.26  E-value=7.8e-06  Score=75.26  Aligned_cols=57  Identities=18%  Similarity=0.180  Sum_probs=47.8

Q ss_pred             EEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC
Q psy7367           6 LSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT   67 (251)
Q Consensus         6 l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~   67 (251)
                      +++.|+. ..  ++++|+  ++++++++|+|||||||++..|++.+.+..|+|.+.+.|+..
T Consensus        82 L~~~~~~-~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r  138 (425)
T 2ffh_A           82 LKEALGG-EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (425)
T ss_dssp             HHHHTTS-SC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred             HHHHhCC-Cc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence            4455643 22  678888  899999999999999999999999999999999998888754

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.26  E-value=1.2e-07  Score=89.95  Aligned_cols=50  Identities=22%  Similarity=0.198  Sum_probs=43.4

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEccee
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD   64 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~   64 (251)
                      ..++.++++++ +|++++|+||||+|||||+++|++...+..|.|.+.|..
T Consensus        96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~  145 (543)
T 3m6a_A           96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVR  145 (543)
T ss_dssp             HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--
T ss_pred             HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccc
Confidence            34678888888 899999999999999999999999999999999887743

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.25  E-value=3.3e-07  Score=72.95  Aligned_cols=33  Identities=27%  Similarity=0.235  Sum_probs=27.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcc
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN   62 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g   62 (251)
                      .|++++|+|||||||||++++|++.+.+    +++++
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~   35 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS   35 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence            4789999999999999999999998754    45553

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=98.20  E-value=5.4e-06  Score=74.65  Aligned_cols=28  Identities=21%  Similarity=0.310  Sum_probs=24.9

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -+++|+++.|.||+|+|||||...++..
T Consensus        59 Gl~~G~ii~I~G~pGsGKTtLal~la~~   86 (356)
T 1u94_A           59 GLPMGRIVEIYGPESSGKTTLTLQVIAA   86 (356)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999999998877753

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.16  E-value=1e-06  Score=81.24  Aligned_cols=159  Identities=11%  Similarity=0.066  Sum_probs=81.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCC------------CCeeEEEEcceeCCC-ChHHhhcceEEEccCCCCCCCCCHHHHH
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGMLP------------VSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHM   95 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~~------------p~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~ltv~e~l   95 (251)
                      .++|+|+||||||||++.|+|...            |.+|.+.++|+++.- .....++..++.+|....|..++..+++
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i  261 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI  261 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence            799999999999999999999864            678999999986521 1111233344555655555555555555


Q ss_pred             HHHHH------h-cCCChHHHHHHHHHHHHHcCCCcc--cCCCCCcCChhH--HHH--HHHHHHHc--cCCCEEEEeCCC
Q psy7367          96 WFYSQ------L-KQVPKDLAQLEISNMIVDLGIPHK--RTSLANTLSGGM--QRK--LSVAMAFI--GGSRTVILDEPT  160 (251)
Q Consensus        96 ~~~~~------~-~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LSgG~--kqr--v~ia~al~--~~p~llllDEPt  160 (251)
                      ...-.      . .+....  ..++.+.+...+..-.  .+ +..-+..-+  ...  -.+++.+.  ...+++    ++
T Consensus       262 ~~ad~vllv~d~~~~~~~~--~~~i~~~l~~~~~~~ilv~N-K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  334 (439)
T 1mky_A          262 EKADVVVIVLDATQGITRQ--DQRMAGLMERRGRASVVVFN-KWDLVVHREKRYDEFTKLFREKLYFIDYSPLI----FT  334 (439)
T ss_dssp             HHCSEEEEEEETTTCCCHH--HHHHHHHHHHTTCEEEEEEE-CGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE----EC
T ss_pred             hhCCEEEEEEeCCCCCCHH--HHHHHHHHHHcCCCEEEEEE-CccCCCchhhHHHHHHHHHHHHhccCCCCcEE----EE
Confidence            44210      0 122222  2345566666553211  11 111111111  111  13444443  344444    48


Q ss_pred             CCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHH
Q psy7367         161 SGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEA  194 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~  194 (251)
                      |+++-.....+++.+.+.....+.-+.|+.++.+
T Consensus       335 SA~~g~gv~~l~~~i~~~~~~~~~~i~t~~ln~~  368 (439)
T 1mky_A          335 SADKGWNIDRMIDAMNLAYASYTTKVPSSAINSA  368 (439)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHhhcccCCHHHHHHH
Confidence            9999999999988887642211122356655443

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=98.15  E-value=1e-06  Score=76.63  Aligned_cols=44  Identities=23%  Similarity=0.218  Sum_probs=33.1

Q ss_pred             ceeeeeeEEEeCC-----------cEEEEEcCCCCcHHHHHHHHhCCCCCCeeEE
Q psy7367          15 LAVNGLNVNFYED-----------QITSFLGHNGAGKTTTISMLMGMLPVSSGTA   58 (251)
Q Consensus        15 ~il~~isl~i~~G-----------e~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i   58 (251)
                      .+++.+...+..+           ..+.|.||+|+||||+.++|++...+..+.+
T Consensus        24 ~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~   78 (311)
T 4fcw_A           24 EAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAM   78 (311)
T ss_dssp             HHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence            4555555555443           5899999999999999999999876655543

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=98.14  E-value=3.5e-07  Score=83.18  Aligned_cols=50  Identities=20%  Similarity=0.227  Sum_probs=45.4

Q ss_pred             EEEeEEEEeCCCcceee--------------eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367           2 AIQNLSKRFPNGKLAVN--------------GLNVNFYEDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus         2 ~i~~l~~~y~~~~~il~--------------~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .++|+++.|+..+..|+              |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus       135 ~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          135 LFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             CTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             eeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            46789999986677899              899999999999999999999999999999865

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.13  E-value=4.7e-07  Score=72.81  Aligned_cols=40  Identities=28%  Similarity=0.287  Sum_probs=32.3

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCee--EEEEcceeC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGMLPVSSG--TAKIYNHDI   65 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G--~i~~~g~~~   65 (251)
                      .+|++++|+|++||||||++++|++.++| .|  .+.+++..+
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~   44 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI   44 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence            47899999999999999999999998765 46  566665443

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.12  E-value=1.1e-05  Score=70.79  Aligned_cols=49  Identities=18%  Similarity=0.174  Sum_probs=43.5

Q ss_pred             ee-eeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC
Q psy7367          18 NG-LNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT   67 (251)
Q Consensus        18 ~~-isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~   67 (251)
                      ++ ++++.+ |++++++|+||+||||++..|++.+.+..++|.+.+.++..
T Consensus        89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r  138 (297)
T 1j8m_F           89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR  138 (297)
T ss_dssp             CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            56 888876 99999999999999999999999998888999998877654

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=98.09  E-value=9.8e-06  Score=70.81  Aligned_cols=30  Identities=20%  Similarity=0.236  Sum_probs=27.0

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          22 VNFYEDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        22 l~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +.+.++..+.|.||+|+|||||++++++..
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence            456889999999999999999999999865

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=98.09  E-value=7.8e-07  Score=72.68  Aligned_cols=42  Identities=26%  Similarity=0.264  Sum_probs=31.7

Q ss_pred             EEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367           7 SKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus         7 ~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      +++|++-..+++++|++.++.. ++++|++|+|||||++.+.+
T Consensus         6 ~~~~~~~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A            6 DWIYSGFSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             -------CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence            4456554578999999988885 68999999999999999987

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.08  E-value=9.3e-07  Score=74.64  Aligned_cols=45  Identities=24%  Similarity=0.282  Sum_probs=32.7

Q ss_pred             eeeeeeEEEe---CCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEc
Q psy7367          16 AVNGLNVNFY---EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY   61 (251)
Q Consensus        16 il~~isl~i~---~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~   61 (251)
                      -|.++|+++.   +|.+++|.|++||||||+++.|+..+.+ .+.+...
T Consensus        12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~   59 (229)
T 4eaq_A           12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT   59 (229)
T ss_dssp             --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred             CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence            5788888887   9999999999999999999999998887 6666544

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=98.06  E-value=4.5e-06  Score=69.07  Aligned_cols=43  Identities=26%  Similarity=0.573  Sum_probs=31.9

Q ss_pred             CEEEeEEEE-eCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q psy7367           1 MAIQNLSKR-FPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLM   48 (251)
Q Consensus         1 l~i~~l~~~-y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~   48 (251)
                      +.++.|... |+    -+.+.++++.+| +.+|+|||||||||++.+|.
T Consensus         1 M~i~~l~i~nf~----~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A            1 MKLERVTVKNFR----SHSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             CEEEEEEEESBT----TBSSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEEEEECCc----CccceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence            345666654 32    244567777775 99999999999999999885

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=98.05  E-value=2.1e-05  Score=72.53  Aligned_cols=176  Identities=11%  Similarity=0.048  Sum_probs=93.1

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCee-EEEEcceeCCCChHHhhcceEEEccCCCCC-CCCCH
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG-TAKIYNHDIRTDMTTIRRSLGVCPQYNALF-DKLTV   91 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~-~~ltv   91 (251)
                      ...|+.+.--+++|+++.|.|++|+|||||+..++.......| .|.+..-+.  +...+..++-  .+...+. ..+. 
T Consensus       187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~--~~~~l~~R~~--~~~~~i~~~~l~-  261 (444)
T 2q6t_A          187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM--PAAQLTLRMM--CSEARIDMNRVR-  261 (444)
T ss_dssp             CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS--CHHHHHHHHH--HHHTTCCTTTCC-
T ss_pred             CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC--CHHHHHHHHH--HHHcCCCHHHHh-
Confidence            3456666656999999999999999999998888764432222 333322211  1111111100  0000000 0000 


Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCCCH----
Q psy7367          92 EEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI--GGSRTVILDEPTSGVDP----  165 (251)
Q Consensus        92 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~--~~p~llllDEPt~gLD~----  165 (251)
                       .        ..+... ...++..+++.+.-.+..-.....+|..+.  .+.++.+.  .+|+++++|..+.-...    
T Consensus       262 -~--------g~l~~~-~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~  329 (444)
T 2q6t_A          262 -L--------GQLTDR-DFSRLVDVASRLSEAPIYIDDTPDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGSGK  329 (444)
T ss_dssp             -G--------GGCCHH-HHHHHHHHHHHHHTSCEEEECCTTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC----
T ss_pred             -C--------CCCCHH-HHHHHHHHHHHHhcCCEEEECCCCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcCCC
Confidence             0        011111 122344444444222222112345666554  44555554  58999999998764432    


Q ss_pred             --H----HHHHHHHHHHhhh-C-CCeEEEEeCCHH-------------------HHHhhcCEEEEeeC
Q psy7367         166 --Y----SRRSIWELLIKYK-K-GRTVILTTHYMD-------------------EADLLGDRIAIIAA  206 (251)
Q Consensus       166 --~----~~~~l~~~l~~l~-~-g~tiii~tHd~~-------------------~~~~~~d~i~~l~~  206 (251)
                        .    ....+...|+.+. + +++||+++|--.                   .++..||.|++|..
T Consensus       330 ~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r  397 (444)
T 2q6t_A          330 SGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR  397 (444)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence              1    1234555566653 3 899999998211                   35678999999863

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.99  E-value=5.4e-08  Score=86.12  Aligned_cols=42  Identities=17%  Similarity=0.305  Sum_probs=33.7

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHH
Q psy7367         150 GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMD  192 (251)
Q Consensus       150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~  192 (251)
                      ++.++++|| ...|++..+..+.+.+.+......+|+++++..
T Consensus       133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~  174 (353)
T 1sxj_D          133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT  174 (353)
T ss_dssp             SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred             CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
Confidence            677999999 788999999999999888765556667776654

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.98  E-value=9.9e-07  Score=73.01  Aligned_cols=43  Identities=14%  Similarity=0.091  Sum_probs=37.3

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCee--EEEEccee
Q psy7367          22 VNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG--TAKIYNHD   64 (251)
Q Consensus        22 l~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G--~i~~~g~~   64 (251)
                      +.+++|.+++|+|++||||||+.+.|++.+.|..|  .+.+++..
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~   64 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN   64 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence            55788999999999999999999999999887888  77777543

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.97  E-value=3.4e-07  Score=77.19  Aligned_cols=145  Identities=14%  Similarity=0.064  Sum_probs=77.2

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcC
Q psy7367          24 FYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ  103 (251)
Q Consensus        24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~  103 (251)
                      +.+|+.+.+.||+||||||++.++..-.....|               ....+.++++.|......++.+++....... 
T Consensus        73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~---------------~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~-  136 (235)
T 3llm_A           73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQND---------------RAAECNIVVTQPRRISAVSVAERVAFERGEE-  136 (235)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT---------------CGGGCEEEEEESSHHHHHHHHHHHHHTTTCC-
T ss_pred             HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC---------------CCCceEEEEeccchHHHHHHHHHHHHHhccc-
Confidence            457999999999999999998876421100000               0124566776665444445555554321100 


Q ss_pred             CChHHHHHHHHHHHHHcC----CCccc---CCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHH
Q psy7367         104 VPKDLAQLEISNMIVDLG----IPHKR---TSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTS-GVDPYSRRSIWELL  175 (251)
Q Consensus       104 ~~~~~~~~~~~~~l~~~~----l~~~~---~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~-gLD~~~~~~l~~~l  175 (251)
                      ..            ..+|    .....   +..+--.+.|+..+..  ...+.+.+++++||.-. ++|.......++.+
T Consensus       137 ~~------------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i  202 (235)
T 3llm_A          137 PG------------KSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDV  202 (235)
T ss_dssp             TT------------SSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred             cC------------ceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHH
Confidence            00            0001    00110   1112234556655553  34689999999999976 67777664444444


Q ss_pred             HhhhCC-CeEEE-EeCCHHHHHhhc
Q psy7367         176 IKYKKG-RTVIL-TTHYMDEADLLG  198 (251)
Q Consensus       176 ~~l~~g-~tiii-~tHd~~~~~~~~  198 (251)
                      .....+ .++++ +|.+.+.+.++.
T Consensus       203 ~~~~~~~~~il~SAT~~~~~~~~~~  227 (235)
T 3llm_A          203 VQAYPEVRIVLMSATIDTSMFCEYF  227 (235)
T ss_dssp             HHHCTTSEEEEEECSSCCHHHHHHT
T ss_pred             HhhCCCCeEEEEecCCCHHHHHHHc
Confidence            443222 33433 355555555444

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.96  E-value=6.4e-07  Score=80.73  Aligned_cols=54  Identities=20%  Similarity=0.226  Sum_probs=35.4

Q ss_pred             EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcc
Q psy7367           2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN   62 (251)
Q Consensus         2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g   62 (251)
                      .+.|+++.|+ ++.++++++|+|      +|+|+||+|||||++.|.|...+..+.+...+
T Consensus        19 ~~~~l~~~~~-~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~   72 (361)
T 2qag_A           19 GFANLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA   72 (361)
T ss_dssp             --CCHHHHHH-THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred             EeccchHHhC-CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence            3556666664 367889999887      99999999999999999988666555544333

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.93  E-value=9.3e-06  Score=64.65  Aligned_cols=27  Identities=22%  Similarity=0.289  Sum_probs=23.5

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ++|..++|+|++|+|||||++.++|..
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367889999999999999999999965

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.91  E-value=8.6e-06  Score=65.85  Aligned_cols=34  Identities=32%  Similarity=0.340  Sum_probs=20.6

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      .++++++++.++. .++++|++|+|||||++.+.+
T Consensus        12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence            4789999998887 679999999999999999997

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.89  E-value=9.8e-07  Score=75.96  Aligned_cols=47  Identities=11%  Similarity=0.088  Sum_probs=37.3

Q ss_pred             CCCCCCHHHHHHHHHHHHhh-hC-CCeEEEEeCCHHHHHhhcCEEEEee
Q psy7367         159 PTSGVDPYSRRSIWELLIKY-KK-GRTVILTTHYMDEADLLGDRIAIIA  205 (251)
Q Consensus       159 Pt~gLD~~~~~~l~~~l~~l-~~-g~tiii~tHd~~~~~~~~d~i~~l~  205 (251)
                      |||+.+..+...+++.+.+. .. ..+..+.+|..+.+++.++++...-
T Consensus       144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~  192 (271)
T 3k53_A          144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISELL  192 (271)
T ss_dssp             ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHHHHH
Confidence            99999999999999999876 33 4556778899888888888765443

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.87  E-value=2.7e-05  Score=68.33  Aligned_cols=41  Identities=10%  Similarity=0.186  Sum_probs=30.6

Q ss_pred             cCCCEEEEeCCCC-CCCHHHHHHHHHHHHhh-hCCCeEEEEeC
Q psy7367         149 GGSRTVILDEPTS-GVDPYSRRSIWELLIKY-KKGRTVILTTH  189 (251)
Q Consensus       149 ~~p~llllDEPt~-gLD~~~~~~l~~~l~~l-~~g~tiii~tH  189 (251)
                      .+|++|++||+.. .-+...+..++..+..+ ..+..+|++++
T Consensus        97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~  139 (324)
T 1l8q_A           97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD  139 (324)
T ss_dssp             HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            5699999999855 34557888899988876 45666666665

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.86  E-value=1.5e-05  Score=64.88  Aligned_cols=25  Identities=24%  Similarity=0.282  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      ..+.|.||+|+|||||+++++....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~   79 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELA   79 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            6899999999999999999997543

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.84  E-value=6.7e-06  Score=68.06  Aligned_cols=26  Identities=19%  Similarity=0.119  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .+..+.|.||+|+|||||++.++...
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~   76 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARA   76 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999998654

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.80  E-value=9.7e-06  Score=65.55  Aligned_cols=32  Identities=19%  Similarity=0.162  Sum_probs=26.6

Q ss_pred             eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          19 GLNVNFYEDQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        19 ~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      ++|++..+|.+++|+|++||||||+.+.|+..
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            57889999999999999999999999999875

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.80  E-value=3.9e-05  Score=62.78  Aligned_cols=44  Identities=16%  Similarity=0.151  Sum_probs=34.2

Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHH
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDE  193 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~  193 (251)
                      .+|.++++||.-. +|+.....+...+.+...+..+|++|++...
T Consensus       125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~  168 (250)
T 1njg_A          125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQK  168 (250)
T ss_dssp             SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred             CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence            4678999999765 7888888888777665557888999987653

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.79  E-value=4.7e-06  Score=67.27  Aligned_cols=38  Identities=21%  Similarity=0.225  Sum_probs=32.1

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEE
Q psy7367          22 VNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK   59 (251)
Q Consensus        22 l~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~   59 (251)
                      +...+|.+++|+|++||||||+.+.|+..+.+..+.+.
T Consensus         8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~   45 (186)
T 2yvu_A            8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE   45 (186)
T ss_dssp             CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence            34457999999999999999999999998877666664

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.77  E-value=3.2e-05  Score=60.86  Aligned_cols=24  Identities=25%  Similarity=0.385  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      .++|+|++|+|||||++.++|...
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~~~   28 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGENV   28 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCe
Confidence            589999999999999999999654

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.76  E-value=2.3e-05  Score=70.55  Aligned_cols=42  Identities=19%  Similarity=0.483  Sum_probs=32.9

Q ss_pred             EEEeEEEE-eCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q psy7367           2 AIQNLSKR-FPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLM   48 (251)
Q Consensus         2 ~i~~l~~~-y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~   48 (251)
                      .++.|+.. |+    .+++..+++.+| +.+|+|||||||||+|.+|.
T Consensus         4 ~l~~L~l~nFr----~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A            4 ILKEIRMNNFK----SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEEEEEET----TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred             EEeEEEEEccc----cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            35555543 42    357788888886 99999999999999999986

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.76  E-value=1e-05  Score=66.07  Aligned_cols=22  Identities=27%  Similarity=0.456  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      +++|+|+|||||||+.++|+++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~~   24 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFREL   24 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHHHC
Confidence            6899999999999999999993

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.75  E-value=1.5e-05  Score=72.62  Aligned_cols=41  Identities=15%  Similarity=0.230  Sum_probs=34.1

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhCC-----------CCCCeeEEEEcce
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMGM-----------LPVSSGTAKIYNH   63 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl-----------~~p~~G~i~~~g~   63 (251)
                      .+..|..++|+|+||+|||||+++|+|.           ..|..|.+.+.+.
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~   69 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE   69 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence            4567889999999999999999999998           6788898887653

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.75  E-value=2e-05  Score=62.86  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      .++|+|++|+|||||++.++|.
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999985

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.71  E-value=3.4e-06  Score=69.00  Aligned_cols=35  Identities=17%  Similarity=0.232  Sum_probs=27.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeC
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI   65 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~   65 (251)
                      ..+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~   52 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL   52 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence            4689999999999999999998765    4455655443

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.69  E-value=1.7e-05  Score=65.07  Aligned_cols=29  Identities=24%  Similarity=0.321  Sum_probs=26.0

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          24 FYEDQITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      ..+|.+++|+||+|||||||.+.|+..++
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            46889999999999999999999998664

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.68  E-value=5.3e-05  Score=67.14  Aligned_cols=27  Identities=22%  Similarity=0.356  Sum_probs=23.8

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ..+..+.|.||.|+|||||++.++...
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999998754

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.66  E-value=3.2e-05  Score=68.07  Aligned_cols=27  Identities=26%  Similarity=0.353  Sum_probs=24.8

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      -+++|+++.|.||+|+|||||...++.
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999999988774

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.66  E-value=0.00016  Score=61.89  Aligned_cols=28  Identities=18%  Similarity=0.124  Sum_probs=24.4

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          24 FYEDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +.++.-+.|.||.|+|||||++.++...
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            4567789999999999999999998754

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.65  E-value=0.00026  Score=63.86  Aligned_cols=27  Identities=26%  Similarity=0.373  Sum_probs=24.1

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      -+++|+++.|.||.|+|||||...++-
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~   96 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVA   96 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence            478999999999999999999877663

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.58  E-value=3.5e-05  Score=61.71  Aligned_cols=26  Identities=31%  Similarity=0.423  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGMLPVS   54 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~~p~   54 (251)
                      .++|+|++|+|||||++.++|...+.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~~~~   29 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTKKSD   29 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC----
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence            47999999999999999999975443

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.56  E-value=8.6e-06  Score=73.21  Aligned_cols=37  Identities=19%  Similarity=0.279  Sum_probs=33.6

Q ss_pred             ceeeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHhCCC
Q psy7367          15 LAVNGLNVNFYEDQI--TSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        15 ~il~~isl~i~~Ge~--~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .+++.+++.+++|++  ++|+|++||||||+.++|++.+
T Consensus        10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l   48 (359)
T 2ga8_A           10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII   48 (359)
T ss_dssp             HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence            477888999999999  9999999999999999999854

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.53  E-value=0.00033  Score=54.23  Aligned_cols=43  Identities=14%  Similarity=0.126  Sum_probs=30.3

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeC-CHHH
Q psy7367         150 GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTH-YMDE  193 (251)
Q Consensus       150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tH-d~~~  193 (251)
                      +..+|++||.- .|++..+..+++.+.....+..+|.+|+ ++..
T Consensus        76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~  119 (145)
T 3n70_A           76 QGGTLVLSHPE-HLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVE  119 (145)
T ss_dssp             TTSCEEEECGG-GSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHH
T ss_pred             CCcEEEEcChH-HCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHH
Confidence            45689999984 6889999999998855544555665555 4443

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.53  E-value=4.1e-05  Score=61.31  Aligned_cols=25  Identities=44%  Similarity=0.445  Sum_probs=22.3

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      .+|.+++|+|++||||||+.+.|+.
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3678999999999999999999984

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.52  E-value=3e-05  Score=62.75  Aligned_cols=37  Identities=32%  Similarity=0.469  Sum_probs=29.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEccee
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGMLPVS---SGTAKIYNHD   64 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~~p~---~G~i~~~g~~   64 (251)
                      .+++|+|++|||||||++.|.+.+++.   -|.|..++.+
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~   46 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD   46 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence            589999999999999999999875432   4777776543

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.47  E-value=5.3e-05  Score=63.59  Aligned_cols=26  Identities=15%  Similarity=0.190  Sum_probs=23.5

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          24 FYEDQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        24 i~~Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      =.+|.+++|+|++||||||+.++|++
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            46788999999999999999999996

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.44  E-value=2.8e-05  Score=66.20  Aligned_cols=46  Identities=20%  Similarity=0.177  Sum_probs=35.5

Q ss_pred             eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeC
Q psy7367          17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI   65 (251)
Q Consensus        17 l~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~   65 (251)
                      +.+.+ ...++.++.|+|++||||||+.+.|+..+.  .+.+.+++..+
T Consensus        23 ~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~   68 (253)
T 2p5t_B           23 TRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF   68 (253)
T ss_dssp             HTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred             HccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence            33434 567889999999999999999999998664  25577776544

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.44  E-value=0.00029  Score=74.46  Aligned_cols=30  Identities=20%  Similarity=0.274  Sum_probs=26.8

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      -+++|+++.|.||+|+|||||+..++....
T Consensus       728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa  757 (1706)
T 3cmw_A          728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ  757 (1706)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence            389999999999999999999999887543

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.39  E-value=2.8e-05  Score=65.90  Aligned_cols=23  Identities=22%  Similarity=0.309  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      .-+++|.||+||||||+.+.|+.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999984

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.37  E-value=5.4e-05  Score=64.09  Aligned_cols=35  Identities=20%  Similarity=0.254  Sum_probs=24.9

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      .++++++.+++|  +.|.||+|+|||||+++|++...
T Consensus        36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence            345555666665  88999999999999999998653

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.37  E-value=9.5e-05  Score=58.09  Aligned_cols=23  Identities=22%  Similarity=0.150  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +++|+|++||||||+.+.|+..+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998653

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.34  E-value=0.00029  Score=59.19  Aligned_cols=52  Identities=19%  Similarity=0.214  Sum_probs=37.6

Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCC----------HHHHHhhcCEEEEee
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHY----------MDEADLLGDRIAIIA  205 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd----------~~~~~~~~d~i~~l~  205 (251)
                      .+|+++++||--. |+..    +.+.++.+. .|.+||++-|+          ...+..+||+|.-|+
T Consensus        88 ~~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~  150 (223)
T 2b8t_A           88 DETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT  150 (223)
T ss_dssp             TTCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred             CCCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence            3589999999854 6654    334444443 48999999993          466667999999875

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.32  E-value=0.0023  Score=59.06  Aligned_cols=28  Identities=32%  Similarity=0.472  Sum_probs=24.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCCCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGMLPV   53 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~p   53 (251)
                      ++.++.++|++||||||++..|+..+..
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~  126 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQK  126 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999976654

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.32  E-value=0.00013  Score=57.81  Aligned_cols=26  Identities=27%  Similarity=0.484  Sum_probs=23.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      |.++.|+|++||||||+.+.|+..+.
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            57899999999999999999997653

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=97.27  E-value=5.7e-05  Score=68.24  Aligned_cols=59  Identities=14%  Similarity=0.108  Sum_probs=46.3

Q ss_pred             cCCCEEEEeCCCCCC---CHHHHHHHHHHHHhhhC-CCeEEEEeCCHHHHH------------hhcCEEEEeeCC
Q psy7367         149 GGSRTVILDEPTSGV---DPYSRRSIWELLIKYKK-GRTVILTTHYMDEAD------------LLGDRIAIIAAG  207 (251)
Q Consensus       149 ~~p~llllDEPt~gL---D~~~~~~l~~~l~~l~~-g~tiii~tHd~~~~~------------~~~d~i~~l~~G  207 (251)
                      ..|.++++||--.-+   ++.....+.+++++.++ |..++++||++..+.            ..|+..+++...
T Consensus       261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~  335 (392)
T 4ag6_A          261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG  335 (392)
T ss_dssp             CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred             CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence            358899999987777   47788888889998865 999999999997653            346677777654

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.26  E-value=0.001  Score=55.81  Aligned_cols=26  Identities=23%  Similarity=0.192  Sum_probs=22.2

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      ....-+.|.||.|+|||||.+.++..
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            44556889999999999999999864

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.26  E-value=0.00017  Score=57.66  Aligned_cols=24  Identities=25%  Similarity=0.423  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      |.++.|.|++||||||+.+.|+-.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~   26 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDN   26 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999999999863

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=97.26  E-value=0.0036  Score=58.34  Aligned_cols=34  Identities=9%  Similarity=0.032  Sum_probs=26.9

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      .|+.+---+.+|+++.|.|++|+|||||+--++-
T Consensus       231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~  264 (503)
T 1q57_A          231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL  264 (503)
T ss_dssp             THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred             hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence            3444433589999999999999999999766654

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.25  E-value=0.00053  Score=55.29  Aligned_cols=43  Identities=19%  Similarity=0.363  Sum_probs=32.7

Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHH
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMD  192 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~  192 (251)
                      .++.++++||. ..+++.....+..++.+...+..+|++|+...
T Consensus       101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~  143 (226)
T 2chg_A          101 APFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYVS  143 (226)
T ss_dssp             CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred             cCceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence            46889999995 55778888888888877655677788887653

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.23  E-value=0.0018  Score=59.06  Aligned_cols=26  Identities=27%  Similarity=0.304  Sum_probs=23.1

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          24 FYEDQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        24 i~~Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      =....++.|+|++||||||+.+.|+.
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34578999999999999999999975

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.21  E-value=0.00018  Score=56.25  Aligned_cols=19  Identities=26%  Similarity=0.480  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q psy7367          29 ITSFLGHNGAGKTTTISML   47 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l   47 (251)
                      +++|.||+||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            7899999999999999999

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.20  E-value=0.0002  Score=59.02  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=22.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      .+-+++|.|++||||||+.+.|+.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999997

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.20  E-value=0.00017  Score=57.79  Aligned_cols=26  Identities=27%  Similarity=0.248  Sum_probs=23.0

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      +++.++.|.|++||||||+.+.|+-.
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            46789999999999999999999753

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.19  E-value=0.0013  Score=58.71  Aligned_cols=27  Identities=19%  Similarity=0.118  Sum_probs=23.1

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .+..-+.|.||.|+|||||+++++...
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            345679999999999999999998754

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.19  E-value=4.8e-05  Score=62.23  Aligned_cols=30  Identities=27%  Similarity=0.465  Sum_probs=24.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCCCeeEE
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGMLPVSSGTA   58 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i   58 (251)
                      +++|.|++||||||+++.|+..+.+....+
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v   31 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV   31 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence            689999999999999999998775443344

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=97.19  E-value=0.00024  Score=63.95  Aligned_cols=36  Identities=17%  Similarity=0.265  Sum_probs=30.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhC-----------CCCCCeeEEEEcc
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMG-----------MLPVSSGTAKIYN   62 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~G-----------l~~p~~G~i~~~g   62 (251)
                      |-.++|+|.+|+|||||++.|+|           ...|+.|.+.+.+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~   48 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence            34689999999999999999998           3457778887765

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.17  E-value=0.0029  Score=54.44  Aligned_cols=41  Identities=12%  Similarity=0.104  Sum_probs=29.8

Q ss_pred             CCCEEEEeCCCC--------CCCHHHHHHHHHHHHhhhCCCeEEEEeCC
Q psy7367         150 GSRTVILDEPTS--------GVDPYSRRSIWELLIKYKKGRTVILTTHY  190 (251)
Q Consensus       150 ~p~llllDEPt~--------gLD~~~~~~l~~~l~~l~~g~tiii~tHd  190 (251)
                      ++.+|++||--.        ..+......+++.+.+...+..+|++|+.
T Consensus       130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~  178 (309)
T 3syl_A          130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYA  178 (309)
T ss_dssp             TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECH
T ss_pred             CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCCh
Confidence            467999999752        33677777777777765556778888864

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=97.16  E-value=0.00046  Score=55.25  Aligned_cols=35  Identities=14%  Similarity=0.290  Sum_probs=25.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHh-CC----CCCCee----EEEEcce
Q psy7367          29 ITSFLGHNGAGKTTTISMLM-GM----LPVSSG----TAKIYNH   63 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~-Gl----~~p~~G----~i~~~g~   63 (251)
                      -++|+|++|+|||||++.+. +.    ..|+.|    .+.++|+
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~   65 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ   65 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence            58999999999999997555 43    456655    4445543

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.15  E-value=0.00061  Score=60.42  Aligned_cols=28  Identities=21%  Similarity=0.283  Sum_probs=25.2

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          22 VNFYEDQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        22 l~i~~Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      -.+++|.++.|.||.|+|||||...++.
T Consensus       118 GGi~~gsviLI~GpPGsGKTtLAlqlA~  145 (331)
T 2vhj_A          118 GHRYASGMVIVTGKGNSGKTPLVHALGE  145 (331)
T ss_dssp             TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            4688899999999999999999999874

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.15  E-value=0.00021  Score=60.82  Aligned_cols=24  Identities=17%  Similarity=0.152  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .+++|+||||||||||.+.|+.-+
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcC
Confidence            368999999999999999998743

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.15  E-value=0.00023  Score=57.43  Aligned_cols=23  Identities=30%  Similarity=0.406  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            68999999999999999999843

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.12  E-value=0.0002  Score=56.88  Aligned_cols=23  Identities=35%  Similarity=0.456  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ++.|+|++||||||+.+.|+..+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58999999999999999998643

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.11  E-value=0.0011  Score=70.93  Aligned_cols=27  Identities=22%  Similarity=0.316  Sum_probs=24.4

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          24 FYEDQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      +++|.++.|.||+|+|||||+..++.-
T Consensus       380 l~~G~lilI~G~pGsGKTtLaLqia~~  406 (2050)
T 3cmu_A          380 LPMGRIVEIYGPESSGKTTLTLQVIAA  406 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            899999999999999999998777653

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.11  E-value=0.00015  Score=57.87  Aligned_cols=25  Identities=28%  Similarity=0.147  Sum_probs=22.5

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      .++.++.|+|++||||||+.+.|+-
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence            4678899999999999999999983

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.10  E-value=0.00025  Score=57.99  Aligned_cols=21  Identities=29%  Similarity=0.461  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q psy7367          30 TSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      +.|+||+|||||||++.|..-
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            689999999999999998754

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.08  E-value=0.00032  Score=56.04  Aligned_cols=25  Identities=32%  Similarity=0.313  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3678999999999999999999753

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.08  E-value=0.00033  Score=56.66  Aligned_cols=26  Identities=27%  Similarity=0.391  Sum_probs=24.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +|-+++|.|+.||||||+.+.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999866

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.07  E-value=0.00031  Score=55.52  Aligned_cols=22  Identities=27%  Similarity=0.422  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~G   49 (251)
                      .++.|.|++||||||+.+.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4789999999999999999986

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.07  E-value=0.00031  Score=56.71  Aligned_cols=32  Identities=25%  Similarity=0.344  Sum_probs=26.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcce
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH   63 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~   63 (251)
                      ..+++|+|++||||||+.+.|+..     |-..++..
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d   39 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLD   39 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEccc
Confidence            358999999999999999999985     55566543

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=97.05  E-value=0.0024  Score=58.83  Aligned_cols=35  Identities=9%  Similarity=0.095  Sum_probs=28.3

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      ..|+.+.--+.+|+++.|.|+.|+|||||+--++.
T Consensus       185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~  219 (444)
T 3bgw_A          185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK  219 (444)
T ss_dssp             HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred             HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence            34555544689999999999999999999877664

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.04  E-value=0.00059  Score=60.45  Aligned_cols=26  Identities=12%  Similarity=0.183  Sum_probs=21.4

Q ss_pred             EeCCcEEEEEcCCCCcHHHH-HHHHhCC
Q psy7367          24 FYEDQITSFLGHNGAGKTTT-ISMLMGM   50 (251)
Q Consensus        24 i~~Ge~~~liG~NGaGKSTL-lk~l~Gl   50 (251)
                      +++| ++-|.||.|+||||| +.+++..
T Consensus        26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~   52 (333)
T 3io5_A           26 MQSG-LLILAGPSKSFKSNFGLTMVSSY   52 (333)
T ss_dssp             BCSE-EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             CcCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence            7889 999999999999999 4444443

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.03  E-value=0.0003  Score=56.09  Aligned_cols=24  Identities=33%  Similarity=0.310  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      =.++|+|++|+|||||++.+.+-.
T Consensus        17 ~ki~ivG~~~vGKSsL~~~l~~~~   40 (181)
T 1fzq_A           17 VRILLLGLDNAGKTTLLKQLASED   40 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999999863

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.02  E-value=0.00039  Score=56.40  Aligned_cols=27  Identities=22%  Similarity=0.518  Sum_probs=23.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      +|.+++|.|+.||||||+.+.|+..+.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            467899999999999999999987544

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.02  E-value=0.00039  Score=56.63  Aligned_cols=25  Identities=24%  Similarity=0.415  Sum_probs=22.9

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      .+|-+++|.|+.||||||+.+.|+-
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence            4688999999999999999999985

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.01  E-value=0.00032  Score=60.92  Aligned_cols=37  Identities=22%  Similarity=0.173  Sum_probs=28.8

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcc
Q psy7367          24 FYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN   62 (251)
Q Consensus        24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g   62 (251)
                      -..+.++.|.||+||||||+.+.|+.-++  .|.+.+++
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~   66 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN   66 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence            34678999999999999999999986442  35566654

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.01  E-value=0.00036  Score=56.02  Aligned_cols=26  Identities=23%  Similarity=0.325  Sum_probs=23.0

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      .++-+++|+|+.||||||+.+.|+-.
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~   32 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQK   32 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            36779999999999999999999853

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.99  E-value=0.00042  Score=55.38  Aligned_cols=23  Identities=30%  Similarity=0.414  Sum_probs=20.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      +.+++|.|+.||||||+.+.|+-
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999999874

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=96.98  E-value=0.00095  Score=61.56  Aligned_cols=56  Identities=14%  Similarity=0.210  Sum_probs=33.7

Q ss_pred             hHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHH
Q psy7367         136 GMQRKLSVAMAFIGGSRTVILDEPTS-GVDPYSRRSIWELLIKYKKGRTVILTTHYMDEA  194 (251)
Q Consensus       136 G~kqrv~ia~al~~~p~llllDEPt~-gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~  194 (251)
                      .+.+....+...+.+++++|+..... ++.... ..+.+.+++  .++.+|++.+-.+..
T Consensus        88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~--~~~pvilV~NK~D~~  144 (456)
T 4dcu_A           88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR--TKKPVVLAVNKLDNT  144 (456)
T ss_dssp             CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT--CCSCEEEEEECC---
T ss_pred             HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH--cCCCEEEEEECccch
Confidence            36666677777788888888876544 455443 445555543  367777777655543

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.96  E-value=0.00045  Score=56.29  Aligned_cols=27  Identities=22%  Similarity=0.240  Sum_probs=23.5

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          24 FYEDQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      .++|-+++|.|+.||||||+.+.|+-.
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~   32 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEA   32 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            357889999999999999999999853

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.92  E-value=0.00047  Score=54.96  Aligned_cols=23  Identities=30%  Similarity=0.472  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ++.|.|+.||||||+.+.|+--+
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l   25 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998644

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.92  E-value=0.00049  Score=55.77  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +++|.|++||||||+.+.|+..+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            89999999999999999998743

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.91  E-value=0.00035  Score=55.53  Aligned_cols=25  Identities=32%  Similarity=0.282  Sum_probs=17.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      ++.++.|.|+.||||||+.+.|+-.
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~   28 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHER   28 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            5679999999999999999999853

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.88  E-value=0.0014  Score=50.53  Aligned_cols=39  Identities=10%  Similarity=-0.004  Sum_probs=29.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeC
Q psy7367         150 GSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTH  189 (251)
Q Consensus       150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tH  189 (251)
                      +..++++||.- .|++..+..+++.+.+.. .+..+|.+|+
T Consensus        75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn  114 (143)
T 3co5_A           75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCS  114 (143)
T ss_dssp             TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred             CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence            35789999964 678888888988887764 3566666665

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.87  E-value=0.0006  Score=54.86  Aligned_cols=25  Identities=20%  Similarity=0.266  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      .+++|+|++|||||||+..|+..++
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhH
Confidence            3799999999999999999998654

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=96.83  E-value=6.6e-05  Score=63.34  Aligned_cols=45  Identities=16%  Similarity=0.217  Sum_probs=28.9

Q ss_pred             HHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHHh-hhCCCeEEEEeC
Q psy7367         145 MAFIGGSRTVILDEPTS-GVDPYSRRSIWELLIK-YKKGRTVILTTH  189 (251)
Q Consensus       145 ~al~~~p~llllDEPt~-gLD~~~~~~l~~~l~~-l~~g~tiii~tH  189 (251)
                      .++...|+++|+|||-. ..+.......++.+.. +..|..|+.++|
T Consensus        79 ~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N  125 (228)
T 2r8r_A           79 ALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN  125 (228)
T ss_dssp             HHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence            33446899999999764 2443333334444444 356889999998

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.83  E-value=0.0028  Score=67.13  Aligned_cols=26  Identities=23%  Similarity=0.337  Sum_probs=23.7

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          24 FYEDQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        24 i~~Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      +++|.++.|.||.|+|||||.-.++.
T Consensus       380 l~~G~lilI~G~pGsGKTtLaLq~a~  405 (1706)
T 3cmw_A          380 LPMGRIVEIYGPESSGKTTLTLQVIA  405 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            89999999999999999999877664

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=96.82  E-value=0.0016  Score=57.48  Aligned_cols=42  Identities=14%  Similarity=0.081  Sum_probs=32.6

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHH
Q psy7367         150 GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMD  192 (251)
Q Consensus       150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~  192 (251)
                      ++.++++||. -.|+......+.+.+.+...+..+|++|++..
T Consensus       119 ~~~vliiDe~-~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~  160 (373)
T 1jr3_A          119 RFKVYLIDEV-HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ  160 (373)
T ss_dssp             SSEEEEEECG-GGSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred             CeEEEEEECc-chhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence            6789999995 45788888888887776555677888888764

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.81  E-value=0.0011  Score=58.51  Aligned_cols=48  Identities=17%  Similarity=0.212  Sum_probs=37.0

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhC----CCCCCeeEEEEcc
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMG----MLPVSSGTAKIYN   62 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~G----l~~p~~G~i~~~g   62 (251)
                      ...++...+++ .|.-+.|+|++|+|||||...+.+    +...+...|...+
T Consensus       132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~  183 (314)
T 1ko7_A          132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS  183 (314)
T ss_dssp             EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred             ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence            35778888888 788999999999999999999987    4444555554433

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.80  E-value=0.0071  Score=52.55  Aligned_cols=42  Identities=19%  Similarity=0.405  Sum_probs=32.4

Q ss_pred             CCCEEEEeCCCCCCC-HHHHHHHHHHHHhhhCCCeEEEEeCCHH
Q psy7367         150 GSRTVILDEPTSGVD-PYSRRSIWELLIKYKKGRTVILTTHYMD  192 (251)
Q Consensus       150 ~p~llllDEPt~gLD-~~~~~~l~~~l~~l~~g~tiii~tHd~~  192 (251)
                      +++++++||.-. |. ......+...+.+...+..+|++|++..
T Consensus       105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~  147 (324)
T 3u61_B          105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSSNCSIIITANNID  147 (324)
T ss_dssp             CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred             CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence            789999999843 44 6677778887777666778888888765

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.79  E-value=0.00074  Score=54.28  Aligned_cols=28  Identities=25%  Similarity=0.339  Sum_probs=24.0

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          24 FYEDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ++.+-+++|.|+.||||||+.+.|+-.+
T Consensus         9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A            9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3467799999999999999999998643

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.78  E-value=0.00057  Score=54.50  Aligned_cols=25  Identities=20%  Similarity=0.243  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      =.++|+|+.|||||||++.+++-..
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~~~   73 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTDSV   73 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3789999999999999999998643

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.78  E-value=0.00073  Score=58.26  Aligned_cols=23  Identities=22%  Similarity=0.475  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .++|+|++|||||||++.++|..
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999964

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.78  E-value=0.00084  Score=55.33  Aligned_cols=26  Identities=31%  Similarity=0.356  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +|-+++|+|+.||||||+.+.|+-.+
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            56789999999999999999998643

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.76  E-value=0.00066  Score=52.52  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.|+|||||++.++|..
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~~   26 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGVE   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCcc
Confidence            37899999999999999998854

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.75  E-value=0.0013  Score=65.50  Aligned_cols=26  Identities=35%  Similarity=0.344  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCCCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGMLPV   53 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~~p   53 (251)
                      ..+.|.||+|+|||++.+.|+.....
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~  614 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFD  614 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            47899999999999999999987643

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.75  E-value=0.00078  Score=54.47  Aligned_cols=22  Identities=27%  Similarity=0.520  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      .++|+|++|+|||||++.++|.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999999864

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.74  E-value=0.00083  Score=55.70  Aligned_cols=26  Identities=23%  Similarity=0.206  Sum_probs=21.8

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      .++.+++|+|+.||||||+.+.|+--
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~   30 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTH   30 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999853

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.74  E-value=0.00083  Score=52.32  Aligned_cols=23  Identities=35%  Similarity=0.537  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.|+|||||++.+.+-.
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCccHHHHHHHHhcCC
Confidence            47999999999999999999854

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.73  E-value=0.00084  Score=53.59  Aligned_cols=22  Identities=36%  Similarity=0.566  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      +++|.|+.||||||+.+.|+-.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~   23 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEY   23 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999763

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.73  E-value=0.00086  Score=51.87  Aligned_cols=22  Identities=18%  Similarity=0.357  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++++|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999973

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.72  E-value=0.00085  Score=54.94  Aligned_cols=21  Identities=29%  Similarity=0.434  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~G   49 (251)
                      .++|+||.||||||+.+.|+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999964

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.71  E-value=0.00075  Score=53.05  Aligned_cols=23  Identities=26%  Similarity=0.254  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      .+++|+|+.||||||+.+.|+-.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999853

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.70  E-value=0.00099  Score=52.36  Aligned_cols=22  Identities=27%  Similarity=0.305  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++++|+|+.||||||+.+.|+-
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999975

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.69  E-value=0.00092  Score=51.82  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCC
Q psy7367          30 TSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ++|+|+.|+|||||++.+++..
T Consensus         5 i~ivG~~~~GKSsli~~l~~~~   26 (169)
T 3q85_A            5 VMLVGESGVGKSTLAGTFGGLQ   26 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHCC-
T ss_pred             EEEECCCCCCHHHHHHHHHhcc
Confidence            7899999999999999998754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.69  E-value=0.00074  Score=52.14  Aligned_cols=22  Identities=18%  Similarity=0.247  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++++|+.|+|||||++.+.+-
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999999874

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.69  E-value=0.0011  Score=53.80  Aligned_cols=25  Identities=32%  Similarity=0.319  Sum_probs=22.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      .+-+++|+|+.||||||+.+.|+-.
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999853

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.69  E-value=0.00099  Score=52.14  Aligned_cols=22  Identities=27%  Similarity=0.271  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      +++|.|+.||||||+.+.|+-.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRS   23 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999863

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.68  E-value=0.00087  Score=52.41  Aligned_cols=23  Identities=17%  Similarity=0.310  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~~   33 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADNT   33 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998753

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.68  E-value=0.00092  Score=53.23  Aligned_cols=24  Identities=25%  Similarity=0.360  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      ..+++|.|+.||||||+.+.|+..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999753

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.67  E-value=0.0011  Score=56.49  Aligned_cols=23  Identities=26%  Similarity=0.345  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .++|+|+.|||||||++.++|-.
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            47999999999999999999974

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.66  E-value=0.00077  Score=51.65  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      .++++|+.|||||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999999875

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.65  E-value=0.00085  Score=55.39  Aligned_cols=25  Identities=16%  Similarity=0.193  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      .+.++.|+|+.||||||+.+.|+--
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999999854

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.65  E-value=0.001  Score=53.87  Aligned_cols=25  Identities=32%  Similarity=0.355  Sum_probs=21.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      ...+++|.|+.||||||+.+.|+-.
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999999853

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.65  E-value=0.00085  Score=60.50  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q psy7367          30 TSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      ++|+|++|+|||||++.|++.
T Consensus         4 v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            4 VGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             EEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999985

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.65  E-value=0.003  Score=58.93  Aligned_cols=75  Identities=13%  Similarity=0.195  Sum_probs=57.9

Q ss_pred             cCCCCCcCChhHHHHHHHHHHHc--c---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEe
Q psy7367         126 RTSLANTLSGGMQRKLSVAMAFI--G---------------GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTT  188 (251)
Q Consensus       126 ~~~~~~~LSgG~kqrv~ia~al~--~---------------~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~t  188 (251)
                      ..+..+.+||||+|-..+|.+.+  +               .-.+++|||. +-+|....+..+++++++  |.=+|++|
T Consensus       373 ~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQliiat  449 (483)
T 3euj_A          373 MRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLIAA  449 (483)
T ss_dssp             EECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEEEE
T ss_pred             eecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEEEC
Confidence            34457899999999655554432  2               2357999999 999999999999999977  45588888


Q ss_pred             CCHHHHHhhcCEEEEee
Q psy7367         189 HYMDEADLLGDRIAIIA  205 (251)
Q Consensus       189 Hd~~~~~~~~d~i~~l~  205 (251)
                      =+  .+..++|.++.+-
T Consensus       450 P~--~i~p~v~~~~~~~  464 (483)
T 3euj_A          450 PE--NISPERGTTYKLV  464 (483)
T ss_dssp             SS--SCCCSSSEEEECC
T ss_pred             cc--hhhhccCceEEEE
Confidence            77  6667788887775

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.65  E-value=0.00085  Score=51.49  Aligned_cols=23  Identities=17%  Similarity=0.296  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .++++|+.|+|||||++.+.+-.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999754

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.64  E-value=0.001  Score=54.48  Aligned_cols=21  Identities=29%  Similarity=0.340  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~G   49 (251)
                      .++|+||.||||||+.+.|+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999974

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.64  E-value=0.00086  Score=51.50  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++++|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999998853

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.64  E-value=0.0009  Score=53.32  Aligned_cols=24  Identities=21%  Similarity=0.338  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      =.++|+|+.|+|||||++.+.+-.
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999999853

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.62  E-value=0.00089  Score=51.49  Aligned_cols=22  Identities=23%  Similarity=0.292  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++++|+.|+|||||++.+.+-
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999999864

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.62  E-value=0.0009  Score=51.74  Aligned_cols=23  Identities=22%  Similarity=0.372  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++++|+.|+|||||++.+.+-.
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            37899999999999999998754

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.62  E-value=0.00064  Score=53.56  Aligned_cols=24  Identities=38%  Similarity=0.418  Sum_probs=20.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      +.=.++|+|++|||||||++.+.+
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            344689999999999999999885

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.62  E-value=0.0011  Score=54.16  Aligned_cols=24  Identities=25%  Similarity=0.414  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      .-+++|+|+.||||||+.+.|+-.
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            357999999999999999999864

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.61  E-value=0.00097  Score=52.87  Aligned_cols=23  Identities=22%  Similarity=0.472  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .++|+|+.|||||||++.+.+-.
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            68999999999999999999864

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.60  E-value=0.00095  Score=51.71  Aligned_cols=22  Identities=23%  Similarity=0.249  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++++|+.|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999999865

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.60  E-value=0.0014  Score=51.13  Aligned_cols=25  Identities=24%  Similarity=0.428  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      +.-.++|+|+.|+|||||++.+.+-
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3457899999999999999999874

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.60  E-value=0.001  Score=52.60  Aligned_cols=22  Identities=36%  Similarity=0.477  Sum_probs=20.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCC
Q psy7367          30 TSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ++|+|+.|+|||||++.+.+-.
T Consensus         4 i~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            4 IIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHhCcC
Confidence            7899999999999999999854

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.60  E-value=0.0011  Score=55.93  Aligned_cols=23  Identities=13%  Similarity=0.333  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -+++|.|+.||||||+.+.|+..
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~   45 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQL   45 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999873

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.59  E-value=0.00096  Score=53.20  Aligned_cols=23  Identities=26%  Similarity=0.304  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      .+++|+|+.||||||+.+.|+-.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999753

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.59  E-value=0.00095  Score=51.50  Aligned_cols=23  Identities=17%  Similarity=0.265  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++++|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            37899999999999999998643

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.59  E-value=0.00091  Score=51.72  Aligned_cols=23  Identities=17%  Similarity=0.319  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            37899999999999999998753

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.58  E-value=0.00099  Score=52.11  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .++|+|+.|||||||++.+.+-.
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            48999999999999999988743

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.58  E-value=0.00099  Score=51.36  Aligned_cols=22  Identities=23%  Similarity=0.309  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++++|+.|+|||||++.+.+-
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999999863

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.57  E-value=0.0013  Score=55.93  Aligned_cols=25  Identities=24%  Similarity=0.294  Sum_probs=22.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      ++.++.|.|++||||||+.+.|+..
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999864

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.56  E-value=0.001  Score=51.93  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++|+|+.|+|||||++.+.+-
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999864

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.54  E-value=0.001  Score=52.00  Aligned_cols=22  Identities=18%  Similarity=0.291  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++|+|+.|+|||||++.+.+-
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999999875

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.53  E-value=0.0013  Score=57.39  Aligned_cols=22  Identities=27%  Similarity=0.617  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      .++|+|++|+|||||++.|.|-
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999985

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.51  E-value=0.0031  Score=54.31  Aligned_cols=42  Identities=14%  Similarity=0.268  Sum_probs=31.6

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHH
Q psy7367         150 GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMD  192 (251)
Q Consensus       150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~  192 (251)
                      ++.++++||. -.++......+.+.+.+...+..+|++|++..
T Consensus       107 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~  148 (323)
T 1sxj_B          107 KHKIVILDEA-DSMTAGAQQALRRTMELYSNSTRFAFACNQSN  148 (323)
T ss_dssp             CCEEEEEESG-GGSCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred             CceEEEEECc-ccCCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence            5899999995 44666777777777777656777888887754

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.50  E-value=0.0012  Score=52.07  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.|+|||||++.+.+-.
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            47899999999999999998643

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.49  E-value=0.0015  Score=54.19  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      +++|.|+.||||||+.+.|+-.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~   23 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDK   23 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999753

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.49  E-value=0.0014  Score=51.15  Aligned_cols=23  Identities=22%  Similarity=0.276  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.|+|||||++.+.+-.
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhCc
Confidence            47899999999999999998743

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.49  E-value=0.0012  Score=50.89  Aligned_cols=22  Identities=18%  Similarity=0.303  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++|+|+.|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999863

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.48  E-value=0.0012  Score=52.34  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.|+|||||++.+.+-.
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            48999999999999999999863

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.48  E-value=0.0014  Score=56.55  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=20.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      .-+++|.|+.||||||+.+.|+.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999984

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.48  E-value=0.0007  Score=58.91  Aligned_cols=26  Identities=27%  Similarity=0.416  Sum_probs=19.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ++-+++|.||+||||||+.+.|...+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~l   29 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIF   29 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999998643

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.47  E-value=0.0012  Score=52.60  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47999999999999999998743

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.46  E-value=0.0013  Score=51.01  Aligned_cols=21  Identities=43%  Similarity=0.460  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~G   49 (251)
                      .++++|+.|+|||||++.+.+
T Consensus         9 ~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            9 RILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999999976

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.45  E-value=0.0013  Score=51.96  Aligned_cols=22  Identities=27%  Similarity=0.298  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++|+|+.|+|||||++.+.+-
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4799999999999999999864

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.45  E-value=0.0017  Score=54.71  Aligned_cols=25  Identities=36%  Similarity=0.337  Sum_probs=22.2

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      .++-+++|+||.||||||+.+.|+-
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999999974

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.44  E-value=0.0014  Score=52.01  Aligned_cols=24  Identities=25%  Similarity=0.448  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      -++|+|+.|+|||||++.+.|-..
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcc
Confidence            478999999999999999998654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.44  E-value=0.0016  Score=56.87  Aligned_cols=23  Identities=26%  Similarity=0.504  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +++|+|+.|||||||++.|.|-.
T Consensus        12 ~v~ivG~~nvGKSTLin~l~g~~   34 (308)
T 3iev_A           12 YVAIVGKPNVGKSTLLNNLLGTK   34 (308)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            89999999999999999999953

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=96.44  E-value=0.0014  Score=56.14  Aligned_cols=23  Identities=30%  Similarity=0.356  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|++|+|||||++.|.+-.
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~~   32 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLTD   32 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            38999999999999999998754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.42  E-value=0.0014  Score=50.49  Aligned_cols=20  Identities=35%  Similarity=0.375  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q psy7367          30 TSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++++|+.|+|||||++.+.+
T Consensus         3 i~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            78999999999999999976

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.41  E-value=0.0014  Score=51.17  Aligned_cols=22  Identities=36%  Similarity=0.462  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++|+|+.|+|||||++.+.+-
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999863

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.40  E-value=0.0015  Score=51.36  Aligned_cols=22  Identities=23%  Similarity=0.292  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4899999999999999999864

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.39  E-value=0.0052  Score=57.34  Aligned_cols=28  Identities=18%  Similarity=0.143  Sum_probs=23.2

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          24 FYEDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +.+..-+.|.||+|+|||+|.++|+...
T Consensus       235 ~~~~~~vLL~GppGtGKT~lAraia~~~  262 (489)
T 3hu3_A          235 VKPPRGILLYGPPGTGKTLIARAVANET  262 (489)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence            3455568999999999999999998743

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.39  E-value=0.0015  Score=50.91  Aligned_cols=23  Identities=17%  Similarity=0.258  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            48999999999999999998743

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.38  E-value=0.0015  Score=51.13  Aligned_cols=23  Identities=22%  Similarity=0.313  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            47999999999999999998743

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.38  E-value=0.0015  Score=51.84  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      .++++|+.|+|||||++.+++-
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.37  E-value=0.0017  Score=54.72  Aligned_cols=23  Identities=17%  Similarity=0.335  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .++|+|+.|||||||++.|.|-.
T Consensus        24 ~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           24 RIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999854

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.37  E-value=0.0019  Score=51.12  Aligned_cols=26  Identities=31%  Similarity=0.349  Sum_probs=22.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +.=.++++|+.|+|||||++.+.+-.
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            44468999999999999999999743

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.34  E-value=0.0038  Score=51.62  Aligned_cols=36  Identities=22%  Similarity=0.294  Sum_probs=29.3

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      ...++..-+++ .|..+.|+||+|||||||...|+.-
T Consensus        22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            34677766665 5789999999999999999999864

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.34  E-value=0.0016  Score=51.39  Aligned_cols=22  Identities=18%  Similarity=0.374  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++|+|+.|+|||||++.+.+-
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999864

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.33  E-value=0.0017  Score=50.85  Aligned_cols=23  Identities=26%  Similarity=0.351  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47999999999999999998753

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.32  E-value=0.0024  Score=54.68  Aligned_cols=30  Identities=30%  Similarity=0.366  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCCCCCeeE
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGMLPVSSGT   57 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~~p~~G~   57 (251)
                      -.++++|.+|+|||||++.|.|-..+..|.
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~  129 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA  129 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence            478999999999999999999976654443

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.31  E-value=0.0017  Score=52.91  Aligned_cols=23  Identities=22%  Similarity=0.293  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        14 ~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999999854

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.31  E-value=0.0017  Score=52.03  Aligned_cols=22  Identities=23%  Similarity=0.292  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++|+|+.|+|||||++.+.+-
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999999864

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.30  E-value=0.0018  Score=52.08  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47999999999999999998753

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.30  E-value=0.0021  Score=52.67  Aligned_cols=21  Identities=33%  Similarity=0.377  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~G   49 (251)
                      .++|+|+.||||||+.+.|+-
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999975

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.30  E-value=0.0021  Score=54.74  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .++|+|+.|||||||++.++|-.
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            48999999999999999999954

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.30  E-value=0.0017  Score=51.49  Aligned_cols=22  Identities=18%  Similarity=0.283  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++++|+.|+|||||++.+.+-
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.29  E-value=0.0017  Score=51.72  Aligned_cols=22  Identities=18%  Similarity=0.326  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++|+|+.|+|||||++.+.+-
T Consensus        10 ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            5899999999999999999873

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.28  E-value=0.0012  Score=54.03  Aligned_cols=24  Identities=33%  Similarity=0.495  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -.++|+|+.|+|||||++.|.|-.
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCC
Confidence            368999999999999999999864

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.28  E-value=0.0024  Score=52.62  Aligned_cols=26  Identities=19%  Similarity=0.317  Sum_probs=22.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +|-++.|+|+.||||||+.+.|+-.+
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            35678999999999999999997643

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.28  E-value=0.0025  Score=52.88  Aligned_cols=28  Identities=29%  Similarity=0.375  Sum_probs=24.1

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      -+|-++.|.|+.||||||+++.|+-.+.
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999976554

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.28  E-value=0.0021  Score=55.23  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .++|+|+.|||||||++.++|-.
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999999964

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.28  E-value=0.0021  Score=51.51  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~~   50 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDDT   50 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999998743

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.27  E-value=0.0023  Score=55.14  Aligned_cols=22  Identities=27%  Similarity=0.422  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~G   49 (251)
                      .++.|+|++||||||+.+.|+-
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999985

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.27  E-value=0.0019  Score=51.40  Aligned_cols=23  Identities=17%  Similarity=0.186  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47999999999999999998753

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.27  E-value=0.0023  Score=51.37  Aligned_cols=23  Identities=17%  Similarity=0.182  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999998754

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.27  E-value=0.0017  Score=51.67  Aligned_cols=24  Identities=33%  Similarity=0.281  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      =.++|+|+.|+|||||++.+.+-.
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           22 VHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            358999999999999999998854

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.26  E-value=0.0018  Score=51.71  Aligned_cols=23  Identities=22%  Similarity=0.430  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47999999999999999998643

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.26  E-value=0.0028  Score=49.65  Aligned_cols=27  Identities=22%  Similarity=0.356  Sum_probs=22.8

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ..+..+.|.||.|+|||||++.++..+
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            345678999999999999999998754

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=96.25  E-value=0.0098  Score=50.17  Aligned_cols=52  Identities=19%  Similarity=0.170  Sum_probs=38.6

Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCC----------HHHHHhhcCEEEEee
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHY----------MDEADLLGDRIAIIA  205 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd----------~~~~~~~~d~i~~l~  205 (251)
                      .+.+++++||---..|   ..++.+.+.+  .|+.||++.+|          ...+..+||.|.-|+
T Consensus        89 ~~~dvViIDEaQF~~~---v~el~~~l~~--~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk  150 (234)
T 2orv_A           89 LGVAVIGIDEGQFFPD---IVEFCEAMAN--AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT  150 (234)
T ss_dssp             TTCSEEEESSGGGCTT---HHHHHHHHHH--TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred             ccCCEEEEEchhhhhh---HHHHHHHHHh--CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence            6789999999866644   3344444433  58999999999          556667899998875

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.25  E-value=0.0023  Score=51.64  Aligned_cols=22  Identities=18%  Similarity=0.341  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++|+|+.|+|||||++.+.+-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4899999999999999999874

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.24  E-value=0.002  Score=52.59  Aligned_cols=24  Identities=25%  Similarity=0.374  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -.++|+|+.|||||||++.|++-.
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            479999999999999999998753

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.24  E-value=0.0021  Score=54.06  Aligned_cols=29  Identities=31%  Similarity=0.494  Sum_probs=22.0

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          24 FYEDQITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      ..+|-++.|.|+.||||||+.+.|+-.+.
T Consensus        22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45899999999999999999999986553

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=96.24  E-value=0.0024  Score=55.34  Aligned_cols=23  Identities=17%  Similarity=0.377  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .++|+|+.|||||||++.|+|..
T Consensus        26 ~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHHCCC
Confidence            69999999999999999999975

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.24  E-value=0.0024  Score=50.69  Aligned_cols=23  Identities=26%  Similarity=0.274  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        17 ~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           17 HKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999964

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.24  E-value=0.002  Score=50.58  Aligned_cols=22  Identities=18%  Similarity=0.191  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++++|+.|+|||||++.+.+-
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999753

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.23  E-value=0.0027  Score=49.93  Aligned_cols=22  Identities=18%  Similarity=0.305  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      .++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999864

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.22  E-value=0.0027  Score=50.45  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            48999999999999999998743

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.22  E-value=0.0024  Score=50.88  Aligned_cols=23  Identities=26%  Similarity=0.294  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        18 ~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           18 LQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999999984

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.21  E-value=0.0028  Score=53.54  Aligned_cols=27  Identities=30%  Similarity=0.498  Sum_probs=24.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      +|.++.|.|++||||||+++.|+..+.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999987553

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.20  E-value=0.0021  Score=51.71  Aligned_cols=21  Identities=29%  Similarity=0.616  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~G   49 (251)
                      .++|+|++|+|||||++.+.|
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999999986

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.20  E-value=0.002  Score=51.89  Aligned_cols=24  Identities=21%  Similarity=0.185  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      =-++|+|+.|+|||||++.+.+-.
T Consensus        25 ~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           25 RKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            358999999999999999999754

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.19  E-value=0.0025  Score=52.58  Aligned_cols=23  Identities=13%  Similarity=0.277  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        30 ~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           30 KTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999985

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.19  E-value=0.0021  Score=50.50  Aligned_cols=21  Identities=19%  Similarity=0.311  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~G   49 (251)
                      .++|+|+.|+|||||++.+.+
T Consensus         8 ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            478999999999999999984

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.19  E-value=0.0022  Score=50.67  Aligned_cols=23  Identities=26%  Similarity=0.216  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~~   45 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMNE   45 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999999753

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.18  E-value=0.0023  Score=50.89  Aligned_cols=22  Identities=18%  Similarity=0.172  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++|+|+.|+|||||++.+.+-
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999863

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.18  E-value=0.0021  Score=51.23  Aligned_cols=23  Identities=17%  Similarity=0.183  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            47999999999999999999754

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.17  E-value=0.0027  Score=56.59  Aligned_cols=25  Identities=16%  Similarity=0.189  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      .+++|.||+|||||||.+.|+..+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            3899999999999999999997653

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.17  E-value=0.0023  Score=51.06  Aligned_cols=23  Identities=17%  Similarity=0.281  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47999999999999999998743

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.16  E-value=0.0065  Score=65.22  Aligned_cols=35  Identities=20%  Similarity=0.224  Sum_probs=30.9

Q ss_pred             cceeeeee--EEEeCCcEEEEEcCCCCcHHHHHHHHh
Q psy7367          14 KLAVNGLN--VNFYEDQITSFLGHNGAGKTTTISMLM   48 (251)
Q Consensus        14 ~~il~~is--l~i~~Ge~~~liG~NGaGKSTLlk~l~   48 (251)
                      .+.|+++.  .-+++|+.+.|.||.|||||||...+.
T Consensus      1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A         1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp             CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred             cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence            45677876  579999999999999999999998877

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.15  E-value=0.0022  Score=52.17  Aligned_cols=22  Identities=23%  Similarity=0.363  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++|+|+.|+|||||++.+.+-
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5799999999999999988753

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.15  E-value=0.0029  Score=51.40  Aligned_cols=24  Identities=29%  Similarity=0.196  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      -++|+|+.|+|||||++.+.+-..
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~~~   50 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDNKF   50 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCC
Confidence            479999999999999999998543

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.15  E-value=0.003  Score=50.68  Aligned_cols=24  Identities=13%  Similarity=0.288  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      -++|+|+.|+|||||++.+.+-..
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~~~~   45 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFHKMS   45 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCC
Confidence            589999999999999999998543

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.15  E-value=0.0027  Score=52.01  Aligned_cols=25  Identities=24%  Similarity=0.214  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +-+++|+|+.||||||+.+.|+..+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4579999999999999999998744

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.14  E-value=0.0024  Score=50.00  Aligned_cols=22  Identities=18%  Similarity=0.179  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++++|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D           10 KCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.14  E-value=0.0034  Score=52.21  Aligned_cols=25  Identities=32%  Similarity=0.348  Sum_probs=22.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      .+..+.|+|+.||||||+.+.|+--
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~   39 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKN   39 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999854

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.14  E-value=0.0033  Score=52.19  Aligned_cols=27  Identities=30%  Similarity=0.420  Sum_probs=24.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      +|-++.+-|+.||||||+++.|.-.+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            488999999999999999999987654

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.13  E-value=0.0024  Score=50.94  Aligned_cols=23  Identities=17%  Similarity=0.146  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.12  E-value=0.0031  Score=50.53  Aligned_cols=24  Identities=17%  Similarity=0.226  Sum_probs=20.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      .=-++|+|+.|+|||||++.+.+-
T Consensus        20 ~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           20 GVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            346899999999999999999874

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.12  E-value=0.0023  Score=51.54  Aligned_cols=23  Identities=17%  Similarity=0.286  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDDT   32 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999998743

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.12  E-value=0.0025  Score=50.75  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++|+|+.|+|||||++.+.+-
T Consensus        24 ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999864

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.11  E-value=0.0025  Score=50.98  Aligned_cols=23  Identities=17%  Similarity=0.380  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      =-++|+|+.|+|||||++.+.+-
T Consensus        29 ~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999999874

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.11  E-value=0.0025  Score=50.45  Aligned_cols=23  Identities=17%  Similarity=0.310  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998743

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.10  E-value=0.003  Score=51.55  Aligned_cols=22  Identities=23%  Similarity=0.434  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++|+|+.|+|||||++.+.+-
T Consensus        36 ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.09  E-value=0.0026  Score=51.12  Aligned_cols=26  Identities=15%  Similarity=0.142  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +-=-++|+|+.|+|||||++.+.+-.
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence            33468999999999999999998753

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.08  E-value=0.0026  Score=51.29  Aligned_cols=23  Identities=17%  Similarity=0.335  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      =-++|+|+.|+|||||++.+.+-
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            36899999999999999999864

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.08  E-value=0.0032  Score=58.45  Aligned_cols=44  Identities=23%  Similarity=0.366  Sum_probs=33.0

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEE
Q psy7367          16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI   60 (251)
Q Consensus        16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~   60 (251)
                      +++.+ +.+-+|+..+|+||+|+|||||++.|+.-.....+.+.+
T Consensus       141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V  184 (473)
T 1sky_E          141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV  184 (473)
T ss_dssp             HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred             HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence            44444 677899999999999999999999998755433344443

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.06  E-value=0.0021  Score=50.34  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++++|+.|+|||||++.+++-
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999999874

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=96.04  E-value=0.0029  Score=54.19  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      .++|+|+.|+|||||++.|+|-..
T Consensus        28 ~i~vvG~~~~GKSSLln~l~g~~~   51 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENFVGRDF   51 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred             eEEEEeCCCCCHHHHHHHHHCCCc
Confidence            699999999999999999999653

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.04  E-value=0.0027  Score=51.39  Aligned_cols=24  Identities=17%  Similarity=0.199  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      --++|+|+.|+|||||++.+.+-.
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           26 KKLVVVGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             cEEEEECcCCCCHHHHHHHHhcCC
Confidence            368999999999999999999743

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=96.03  E-value=0.0031  Score=50.55  Aligned_cols=24  Identities=29%  Similarity=0.229  Sum_probs=20.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      .=.++|+|+.|+|||||++.+.+-
T Consensus        29 ~~ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           29 QMRILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhC
Confidence            346899999999999999999764

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.03  E-value=0.0039  Score=52.11  Aligned_cols=27  Identities=26%  Similarity=0.362  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      +|-+++|.|+.||||||+.+.|+-.++
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            367899999999999999999997653

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=96.02  E-value=0.0034  Score=53.33  Aligned_cols=23  Identities=35%  Similarity=0.625  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .++|+|+.|+|||||++.|.|-.
T Consensus        38 ~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           38 TVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999999854

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.02  E-value=0.0028  Score=51.68  Aligned_cols=23  Identities=17%  Similarity=0.249  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~~   52 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKDC   52 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999999753

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.00  E-value=0.0041  Score=51.79  Aligned_cols=33  Identities=21%  Similarity=0.214  Sum_probs=27.7

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEE
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA   58 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i   58 (251)
                      .+|.++.+-|+.||||||+.+.|.-.+.. .+.+
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~~~   35 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL   35 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCS-SEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc-cceE
Confidence            36899999999999999999999987765 3443

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=95.98  E-value=0.0021  Score=50.54  Aligned_cols=22  Identities=23%  Similarity=0.317  Sum_probs=9.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++|+|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999999864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=95.98  E-value=0.0032  Score=50.18  Aligned_cols=22  Identities=27%  Similarity=0.431  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++|+|+.|+|||||++.+.+-
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            5899999999999999888763

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.98  E-value=0.0042  Score=54.82  Aligned_cols=68  Identities=19%  Similarity=0.193  Sum_probs=40.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEE-------EcceeCCC--ChHHhhcceEEEc-cCCCCCCCCCHHHHHH
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK-------IYNHDIRT--DMTTIRRSLGVCP-QYNALFDKLTVEEHMW   96 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~-------~~g~~~~~--~~~~~~~~i~~v~-q~~~l~~~ltv~e~l~   96 (251)
                      +.+++|+||+|||||||...|+--+.   |.|.       +.|.++..  +...-+..+-+-+ +........++.+...
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~---~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~   79 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLN---GEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQD   79 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTT---EEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHH
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCc---cceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHH
Confidence            45899999999999999999986542   4442       33455532  2222233443333 2223334567766654


Q ss_pred             H
Q psy7367          97 F   97 (251)
Q Consensus        97 ~   97 (251)
                      .
T Consensus        80 ~   80 (322)
T 3exa_A           80 L   80 (322)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.98  E-value=0.0043  Score=51.96  Aligned_cols=28  Identities=32%  Similarity=0.457  Sum_probs=24.7

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      .+|-++.+.|+.||||||+.+.|...+.
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4689999999999999999999987554

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.97  E-value=0.0039  Score=55.16  Aligned_cols=24  Identities=29%  Similarity=0.336  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .++.|+||+|||||||.+.|+.-+
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            479999999999999999999754

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.95  E-value=0.0036  Score=49.04  Aligned_cols=27  Identities=26%  Similarity=0.321  Sum_probs=22.7

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ..+..+.|.||.|+|||||++.++...
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            345678999999999999999998754

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.95  E-value=0.0037  Score=53.26  Aligned_cols=23  Identities=26%  Similarity=0.573  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .++++|+.|+|||||++.|.|-.
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999854

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.94  E-value=0.0043  Score=55.22  Aligned_cols=26  Identities=19%  Similarity=0.410  Sum_probs=23.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ++.++.|+||.|||||||...|+--+
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHC
Confidence            46799999999999999999999765

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.93  E-value=0.0045  Score=50.16  Aligned_cols=23  Identities=26%  Similarity=0.271  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         9 ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            9 AVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.93  E-value=0.0032  Score=50.71  Aligned_cols=22  Identities=18%  Similarity=0.250  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++|+|+.|+|||||++.+.+-
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999999874

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.89  E-value=0.0036  Score=49.87  Aligned_cols=22  Identities=18%  Similarity=0.207  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++++|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.88  E-value=0.0046  Score=51.02  Aligned_cols=22  Identities=27%  Similarity=0.613  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      .++|+|++|+|||||++.+.|.
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999974

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.88  E-value=0.018  Score=56.25  Aligned_cols=39  Identities=18%  Similarity=0.254  Sum_probs=29.2

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-----------CCCeEEEEeC
Q psy7367         150 GSRTVILDEPTSGVDPYSRRSIWELLIKYK-----------KGRTVILTTH  189 (251)
Q Consensus       150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~-----------~g~tiii~tH  189 (251)
                      .+.+++|||- .-+++.....+++.+.+-.           .+..||++|+
T Consensus       579 ~~~vl~lDEi-~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn  628 (758)
T 3pxi_A          579 PYSVVLLDAI-EKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN  628 (758)
T ss_dssp             SSSEEEEECG-GGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred             CCeEEEEeCc-cccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence            3459999998 4568888888888887621           2457888887

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.87  E-value=0.0037  Score=52.11  Aligned_cols=29  Identities=24%  Similarity=0.381  Sum_probs=24.2

Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          21 NVNFYEDQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        21 sl~i~~Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      +-.+++..++.|+||.||||||..+.|+-
T Consensus        23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             -CCTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             chhccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34556778999999999999999999984

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.85  E-value=0.0065  Score=50.20  Aligned_cols=58  Identities=19%  Similarity=0.217  Sum_probs=37.6

Q ss_pred             ccCCCEEEEeCCCC----CCCHHHHHHHHHHHHhh-hC-CCeEEEEeCCHH----------HHHhhcCEEEEee
Q psy7367         148 IGGSRTVILDEPTS----GVDPYSRRSIWELLIKY-KK-GRTVILTTHYMD----------EADLLGDRIAIIA  205 (251)
Q Consensus       148 ~~~p~llllDEPt~----gLD~~~~~~l~~~l~~l-~~-g~tiii~tHd~~----------~~~~~~d~i~~l~  205 (251)
                      ..+|+++++|--+.    .-|......+...|..+ ++ ++++++++|-..          ..+..||-++.|+
T Consensus       133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~  206 (251)
T 2zts_A          133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD  206 (251)
T ss_dssp             HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred             hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence            45888999986432    11444455566666665 33 999999998532          2345789888875

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=95.83  E-value=0.002  Score=52.49  Aligned_cols=23  Identities=30%  Similarity=0.456  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~~   35 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDGR   35 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998643

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.81  E-value=0.005  Score=50.39  Aligned_cols=24  Identities=38%  Similarity=0.520  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -.++|+|+.|+|||||++-++.-.
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            478999999999999999988643

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.80  E-value=0.00096  Score=61.42  Aligned_cols=43  Identities=21%  Similarity=0.325  Sum_probs=31.5

Q ss_pred             EEEeCC--cEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEccee
Q psy7367          22 VNFYED--QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD   64 (251)
Q Consensus        22 l~i~~G--e~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~   64 (251)
                      |.+.++  .+++++|++|+||||+...|++.+.....+|.+-.-+
T Consensus        92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D  136 (432)
T 2v3c_C           92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD  136 (432)
T ss_dssp             CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence            444444  5999999999999999999999776443455554433

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=95.79  E-value=0.0031  Score=49.99  Aligned_cols=22  Identities=32%  Similarity=0.298  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~G   49 (251)
                      =-++++|+.|+|||||++.+.+
T Consensus        23 ~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           23 IRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            4589999999999999999965

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=95.79  E-value=0.006  Score=49.27  Aligned_cols=52  Identities=19%  Similarity=0.240  Sum_probs=34.1

Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHH----------HHHhhcCEEEEee
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMD----------EADLLGDRIAIIA  205 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~----------~~~~~~d~i~~l~  205 (251)
                      .+++++++||--. +++.    +.+.++.+. .|..|+++.++.+          .+..+||.+.-|+
T Consensus        75 ~~~dvviIDE~Q~-~~~~----~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~  137 (184)
T 2orw_A           75 EDTRGVFIDEVQF-FNPS----LFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK  137 (184)
T ss_dssp             TTEEEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred             CCCCEEEEECccc-CCHH----HHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence            3678999999633 5443    444555442 4888999888543          2344689987775

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.77  E-value=0.0033  Score=53.27  Aligned_cols=29  Identities=24%  Similarity=0.198  Sum_probs=24.4

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          24 FYEDQITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      ..++-+++|.|+.||||||+.+.|+-.+.
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            35788999999999999999999987653

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.76  E-value=0.0014  Score=55.38  Aligned_cols=28  Identities=21%  Similarity=0.335  Sum_probs=22.5

Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          21 NVNFYEDQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        21 sl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      ++..+.|  +.|.||+|+|||||+++++..
T Consensus        40 ~~~~~~~--vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           40 GAKIPKG--VLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             SCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred             CCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence            3344555  779999999999999999973

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=95.73  E-value=0.0021  Score=51.56  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=4.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++|+|+.|+|||||++.+.+-
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999998875

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=95.71  E-value=0.0046  Score=49.94  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~~   53 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTGA   53 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhhCC
Confidence            48999999999999999998643

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=95.68  E-value=0.0049  Score=50.51  Aligned_cols=23  Identities=22%  Similarity=0.361  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~~   37 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKNE   37 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47999999999999999998753

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=95.65  E-value=0.0049  Score=49.87  Aligned_cols=22  Identities=18%  Similarity=0.196  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~G   49 (251)
                      =.++++|+.|+|||||++.+.+
T Consensus        31 ~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           31 IKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHHh
Confidence            4689999999999999988874

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.64  E-value=0.007  Score=53.29  Aligned_cols=25  Identities=24%  Similarity=0.318  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ..++.|+||+|||||||...|+--.
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            4589999999999999999998654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.59  E-value=0.0055  Score=50.09  Aligned_cols=22  Identities=23%  Similarity=0.301  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++|+|+.|+|||||++.+.+-
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=95.53  E-value=0.0057  Score=49.42  Aligned_cols=22  Identities=18%  Similarity=0.197  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++|+|+.|+|||||++.+.+-
T Consensus        11 ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999999853

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.50  E-value=0.0081  Score=49.55  Aligned_cols=22  Identities=45%  Similarity=0.536  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      ++.|+||.||||+|..+.|+--
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999853

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.46  E-value=0.014  Score=47.24  Aligned_cols=35  Identities=14%  Similarity=0.075  Sum_probs=26.7

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      +..++..-+. -.|.-+.|.|++|+|||||...+..
T Consensus         4 ~~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A            4 KQTWHANFLV-IDKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             CEEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             cEEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence            3455664444 4578999999999999999887754

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=95.44  E-value=0.0093  Score=49.06  Aligned_cols=26  Identities=35%  Similarity=0.500  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      |.+++|=|+-||||||+++.|+-.+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            56899999999999999999987654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=95.39  E-value=0.012  Score=50.93  Aligned_cols=29  Identities=24%  Similarity=0.245  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCCCCCee
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGMLPVSSG   56 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~~p~~G   56 (251)
                      -.++++|.+|+|||||++.|.|-.....|
T Consensus       121 ~~v~~vG~~nvGKSsliN~l~~~~~~~~~  149 (282)
T 1puj_A          121 IRALIIGIPNVGKSTLINRLAKKNIAKTG  149 (282)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred             ceEEEEecCCCchHHHHHHHhcCceeecC
Confidence            46899999999999999999997644333

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=95.38  E-value=0.0079  Score=54.59  Aligned_cols=41  Identities=7%  Similarity=0.138  Sum_probs=29.8

Q ss_pred             HHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367         112 EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL  156 (251)
Q Consensus       112 ~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll  156 (251)
                      .+.++++.++....    ...+|..+...+.-...+...|-++++
T Consensus       181 ~~~~~l~~l~~~~~----~~~~~~~e~~~l~~~~~~~~kP~i~v~  221 (397)
T 1wxq_A          181 DVWEAMHKLNLPED----PTKWSQDDLLAFASEIRRVNKPMVIAA  221 (397)
T ss_dssp             HHHHHHHHTTCCSC----GGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred             HHHHHHHHhccCCc----cccCCHHHHHHHHHhhhccCCCEEEEE
Confidence            45667777766432    348899998888777767778988887

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=95.35  E-value=0.036  Score=48.68  Aligned_cols=43  Identities=14%  Similarity=0.178  Sum_probs=31.6

Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHH
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMD  192 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~  192 (251)
                      .+++++|+||.- .|...+...+++.+.+-..+..+|++|++.+
T Consensus       107 ~~~kvviIdead-~l~~~a~naLLk~lEep~~~~~~Il~t~~~~  149 (334)
T 1a5t_A          107 GGAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPE  149 (334)
T ss_dssp             SSCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred             CCcEEEEECchh-hcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence            468999999974 4667777777766655444677888998874

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=95.27  E-value=0.014  Score=51.89  Aligned_cols=33  Identities=15%  Similarity=0.195  Sum_probs=26.5

Q ss_pred             eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          18 NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        18 ~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      ..+.++++----++|+|..+||||||++.|++-
T Consensus       149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~  181 (342)
T 1lnz_A          149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA  181 (342)
T ss_dssp             EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred             hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence            445566665556899999999999999999874

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.24  E-value=0.011  Score=53.99  Aligned_cols=68  Identities=13%  Similarity=0.045  Sum_probs=38.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEE-------EcceeCCC--ChHHhhcceEEEc-cCCCCCCCCCHHHHHHH
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGMLPVSSGTAK-------IYNHDIRT--DMTTIRRSLGVCP-QYNALFDKLTVEEHMWF   97 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~-------~~g~~~~~--~~~~~~~~i~~v~-q~~~l~~~ltv~e~l~~   97 (251)
                      .+++|.||+|||||||.+.|+--+.   |.|.       +.|.++..  ....-+..+-|-+ +...+....++.+++..
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~---~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~   79 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFN---GEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETE   79 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHT---EEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCC---CeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHH
Confidence            4789999999999999999986442   3332       22334422  1222233444433 22233345677776655


Q ss_pred             H
Q psy7367          98 Y   98 (251)
Q Consensus        98 ~   98 (251)
                      .
T Consensus        80 a   80 (409)
T 3eph_A           80 C   80 (409)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=95.19  E-value=0.012  Score=53.16  Aligned_cols=44  Identities=20%  Similarity=0.311  Sum_probs=31.9

Q ss_pred             eEEEe-CCc-EEEEEcCCCCcHHHHHHHHhCCCC-----------CCeeEEEEccee
Q psy7367          21 NVNFY-EDQ-ITSFLGHNGAGKTTTISMLMGMLP-----------VSSGTAKIYNHD   64 (251)
Q Consensus        21 sl~i~-~Ge-~~~liG~NGaGKSTLlk~l~Gl~~-----------p~~G~i~~~g~~   64 (251)
                      .|.|. .|. -+||+|...+||||||+.|+|-..           |..|.+.+.|..
T Consensus        64 ~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~  120 (376)
T 4a9a_A           64 GFDVARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK  120 (376)
T ss_dssp             TTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE
T ss_pred             CceEeecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE
Confidence            45553 343 589999999999999999999642           335777776644

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.16  E-value=0.011  Score=52.50  Aligned_cols=26  Identities=31%  Similarity=0.354  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ..-+++|+|+.|+|||||++.|++.+
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            34589999999999999999998754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=95.13  E-value=0.0092  Score=54.59  Aligned_cols=22  Identities=23%  Similarity=0.514  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      .++|+|+.|+|||||++.|+|-
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~~   26 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAGE   26 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999984

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=94.09  E-value=0.0037  Score=50.31  Aligned_cols=22  Identities=18%  Similarity=0.196  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~G   49 (251)
                      =-++|+|+.|+|||||++.+.+
T Consensus        31 ~ki~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           31 IKCVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            4589999999999999988875

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=95.04  E-value=0.0069  Score=49.41  Aligned_cols=38  Identities=21%  Similarity=0.122  Sum_probs=26.1

Q ss_pred             HHHHHHHccCCCEEEEeCCCC-----CCCHHHHHHHHHHHHhh
Q psy7367         141 LSVAMAFIGGSRTVILDEPTS-----GVDPYSRRSIWELLIKY  178 (251)
Q Consensus       141 v~ia~al~~~p~llllDEPt~-----gLD~~~~~~l~~~l~~l  178 (251)
                      -.|++.+..+|.+.+.++|+.     .+|+..++++...+++.
T Consensus       167 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
T 3gj0_A          167 LWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVA  209 (221)
T ss_dssp             HHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhh
Confidence            366777777777777776655     67777777777666554

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=95.01  E-value=0.0073  Score=55.69  Aligned_cols=41  Identities=17%  Similarity=0.199  Sum_probs=30.1

Q ss_pred             eeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHhCCCCCCeeEE
Q psy7367          18 NGLNVNFYEDQI--TSFLGHNGAGKTTTISMLMGMLPVSSGTA   58 (251)
Q Consensus        18 ~~isl~i~~Ge~--~~liG~NGaGKSTLlk~l~Gl~~p~~G~i   58 (251)
                      +.+.-.+..|.+  +.|.||.|+|||||.++|+......-..+
T Consensus        39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l   81 (447)
T 3pvs_A           39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERI   81 (447)
T ss_dssp             SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence            334444555654  89999999999999999999876544433

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=95.00  E-value=0.0079  Score=53.43  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .++|+|+.|||||||++.|+|..
T Consensus        33 ~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           33 QIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             EEEEECBTTSSHHHHHHTTTTSC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC
Confidence            69999999999999999999964

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=94.99  E-value=0.0023  Score=51.40  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        35 ki~vvG~~~~GKSsli~~l~~~~   57 (199)
T 3l0i_B           35 KLLLIGDSGVGKSCLLLRFADDT   57 (199)
T ss_dssp             EEEEECCTTSCCTTTTTSSBCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999998754

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=94.96  E-value=0.013  Score=51.56  Aligned_cols=37  Identities=19%  Similarity=0.179  Sum_probs=27.7

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEc
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY   61 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~   61 (251)
                      .+|..+.|.||.|+|||||.+.++.........+.+.
T Consensus        68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~  104 (368)
T 3uk6_A           68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIA  104 (368)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence            3467899999999999999999998765332333443

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=94.96  E-value=0.014  Score=49.15  Aligned_cols=22  Identities=32%  Similarity=0.409  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~G   49 (251)
                      --+||+|+.||||||+.+.|+-
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHH
Confidence            3579999999999999999864

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=94.93  E-value=0.016  Score=50.51  Aligned_cols=25  Identities=20%  Similarity=0.286  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +.-+.|.||.|+|||+|+++|+...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~  176 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHEL  176 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999998643

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=94.86  E-value=0.014  Score=49.35  Aligned_cols=26  Identities=15%  Similarity=0.022  Sum_probs=22.2

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      .+...+.|.||.|+|||||.+.++..
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34457889999999999999999874

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=94.83  E-value=0.014  Score=55.30  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      =.++|+|..|+|||||++.|.|-.
T Consensus        66 ~~V~vvG~~n~GKSTLIN~Llg~~   89 (550)
T 2qpt_A           66 PMVLVAGQYSTGKTSFIQYLLEQE   89 (550)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCc
Confidence            489999999999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	251
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	1e-57
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	1e-56
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	1e-50
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	2e-48
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	1e-47
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	1e-46
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	2e-44
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	3e-44
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	3e-44
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	6e-44
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	4e-42
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	1e-40
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	2e-40
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	2e-39
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	1e-38
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	8e-38
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	5e-37
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	8e-37
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	4e-35
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	5e-33
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	2e-14
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	5e-10
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	8e-09
d1w1wa_	427	c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac	9e-06

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  181 bits (461), Expect = 1e-57
 Identities = 66/214 (30%), Positives = 110/214 (51%), Gaps = 4/214 (1%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           ++NL+KRF N   AVN LN+   + +    LG +G GKTTT+ M+ G+   + G     +
Sbjct: 9   LENLTKRFGN-FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGD 67

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
            D  T +    R++ +  Q  A++  +TV E++ F  ++K+ PKD     +      L I
Sbjct: 68  RD-VTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQI 126

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKK 180
                     LSGG +++++VA A +     +++DEP S +D   R ++   +  ++ K 
Sbjct: 127 EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL 186

Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
             T I  TH   EA  +GDRIA++  G+L   GS
Sbjct: 187 KVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGS 220

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score =  179 bits (454), Expect = 1e-56
 Identities = 61/222 (27%), Positives = 111/222 (50%), Gaps = 2/222 (0%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           +++L KR    K  + G++    E +I   +G NGAGKTTT+ ++  ++  SSG   ++ 
Sbjct: 5   VKDLRKRI-GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFG 63

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
            ++  +   +R+ +   P+    +  +   E++ F +          +  +       G+
Sbjct: 64  KNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGL 123

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-G 181
             K     +T S GM RKL +A A +   R  ILDEPTSG+D  + R + ++L +  + G
Sbjct: 124 GEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 183

Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFA 223
            T+++++H M E + L DRIA+I  G +   G+   LK  + 
Sbjct: 184 LTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 225

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score =  163 bits (415), Expect = 1e-50
 Identities = 61/221 (27%), Positives = 116/221 (52%), Gaps = 9/221 (4%)

Query: 3   IQNLSKRFPNGKL---AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           + N++K F  G     A+N ++++    QI   +G +GAGK+T I  +  +   + G+  
Sbjct: 4   LSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVL 63

Query: 60  IYNHDI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISN 115
           +   ++     +++T  RR +G+  Q+  L    TV  ++    +L   PKD  +  ++ 
Sbjct: 64  VDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTE 123

Query: 116 MIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
           ++  +G+  K  S  + LSGG ++++++A A     + ++ DE TS +DP + RSI ELL
Sbjct: 124 LLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL 183

Query: 176 IKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
               +  G T++L TH MD    + D +A+I+ G+L    +
Sbjct: 184 KDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 224

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score =  158 bits (401), Expect = 2e-48
 Identities = 50/229 (21%), Positives = 105/229 (45%), Gaps = 18/229 (7%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           + +L KR+  G   + G+++      + S +G +G+GK+T +  +  +   S G   +  
Sbjct: 5   VIDLHKRY-GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNG 63

Query: 63  HDI--------------RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYS-QLKQVPKD 107
            +I              +  +  +R  L +  Q+  L+  +TV E++     Q+  + K 
Sbjct: 64  QNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKH 123

Query: 108 LAQLEISNMIVDLGIPHK-RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
            A+      +  +GI  + +      LSGG Q+++S+A A       ++ DEPTS +DP 
Sbjct: 124 DARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE 183

Query: 167 SRRSIWELLIKY-KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
               +  ++ +  ++G+T+++ TH M  A  +   +  +  GK++  G 
Sbjct: 184 LVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 232

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score =  155 bits (394), Expect = 1e-47
 Identities = 54/230 (23%), Positives = 106/230 (46%), Gaps = 5/230 (2%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           +Q+L   +     A+ G+++     QI + +G NGAGKTTT+S + G++    G      
Sbjct: 9   VQSLHVYY-GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG 67

Query: 63  HDIRTDMTTIR--RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
            DI      +     + + P+   +F +LTV E++   +  ++  + + +       +  
Sbjct: 68  QDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFP 127

Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
            +  +   L  TLSGG Q+ L++  A +   + +++DEP+ G+ P     ++E++ K  +
Sbjct: 128 RLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ 187

Query: 181 -GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS-SVFLKNSFARGYYL 228
            G T++L       A  +     ++  G++   G  S  L N   R  YL
Sbjct: 188 EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEMVRKAYL 237

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  153 bits (388), Expect = 1e-46
 Identities = 53/228 (23%), Positives = 102/228 (44%), Gaps = 17/228 (7%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
            +N+ K F     A++G++++  +  +T  +G NG+GK+T I+++ G L    G     N
Sbjct: 7   TENIVKYF-GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFEN 65

Query: 63  HDIRTDMTTIRRSLGVC--PQYNALFDKLTVEEHMWFYSQL------------KQVPKDL 108
            DI           G+    Q      ++TV E++                  K +PK+ 
Sbjct: 66  KDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEE 125

Query: 109 AQLEISNMIVD-LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS 167
             +E +  I++ L + H     A  LSGG  + + +  A +   + +++DEP +GV P  
Sbjct: 126 EMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 185

Query: 168 RRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
              I+  +++ K KG T ++  H +D      D + ++  G++   G 
Sbjct: 186 AHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score =  147 bits (372), Expect = 2e-44
 Identities = 58/224 (25%), Positives = 110/224 (49%), Gaps = 10/224 (4%)

Query: 1   MA---IQNLSKRFPNGKL-AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG 56
           M    ++N+SK F  GK+ A++ +N+N    +    LG +GAGKTT + ++ G+   S+G
Sbjct: 1   MVRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTG 60

Query: 57  TAKIYNHDI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE 112
                +  +    +  +    R +G+  Q  AL+  LT  E++ F     ++ K+  +  
Sbjct: 61  ELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR 120

Query: 113 ISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW 172
           +  +   L I H        LSG  Q+++++A A +     ++LDEP S +D   R S  
Sbjct: 121 VEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSAR 180

Query: 173 ELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
            L+  ++ + G T+++ +H   +   + DR+ ++  GKL   G 
Sbjct: 181 ALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGK 224

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score =  146 bits (370), Expect = 3e-44
 Identities = 60/214 (28%), Positives = 110/214 (51%), Gaps = 8/214 (3%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           I++LS+++     +++ L++     +    LG  GAGKT  + ++ G     SG   +  
Sbjct: 4   IESLSRKW--KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDG 61

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
            D  TD++  +  +    Q  +LF  + V++++ F  ++K++      L+      DL I
Sbjct: 62  KD-VTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLD---TARDLKI 117

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKK 180
            H       TLSGG Q+++++A A +   + ++LDEP S +DP ++ +  E+L  +  K 
Sbjct: 118 EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN 177

Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
             TV+  TH   EA ++ DRIA++  GKL   G 
Sbjct: 178 KLTVLHITHDQTEARIMADRIAVVMDGKLIQVGK 211

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  146 bits (370), Expect = 3e-44
 Identities = 56/214 (26%), Positives = 105/214 (49%), Gaps = 4/214 (1%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           +QN++K +    +    +N++ +E +   F+G +G GK+T + M+ G+  ++SG   I  
Sbjct: 3   LQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGE 61

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
                D     R +G+  Q  AL+  L+V E+M F  +L    K++    ++ +   L +
Sbjct: 62  KR-MNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL 120

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKK 180
            H        LSGG ++++++    +      +LDEP S +D   R  +   +  +  + 
Sbjct: 121 AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 180

Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           GRT+I  TH   EA  L D+I ++ AG++   G 
Sbjct: 181 GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGK 214

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score =  146 bits (369), Expect = 6e-44
 Identities = 60/224 (26%), Positives = 107/224 (47%), Gaps = 11/224 (4%)

Query: 1   MA---IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
           MA   + ++ K F     AV  +++   + +    LG +G GKTTT+ M+ G+   S G 
Sbjct: 1   MAGVRLVDVWKVF-GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59

Query: 58  AKIYNHDI-----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE 112
             I +  +        +    R + +  Q  AL+  +TV +++ F  +L++VP+      
Sbjct: 60  IYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR 119

Query: 113 ISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW 172
           +  +   LG+          LSGG ++++++  A +   +  ++DEP S +D   R  + 
Sbjct: 120 VREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMR 179

Query: 173 ELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
             L  ++ + G T I  TH   EA  +GDRIA++  G LQ  GS
Sbjct: 180 AELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGS 223

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  141 bits (357), Expect = 4e-42
 Identities = 49/222 (22%), Positives = 101/222 (45%), Gaps = 15/222 (6%)

Query: 3   IQNLSKRFPNGK---LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
           ++N++K +  G+    A+  +N+N  E +  S +G +G+GK+T ++++  +   + G   
Sbjct: 4   LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVY 63

Query: 60  IYNHDI-----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWF---YSQLKQVPKDLAQL 111
           I N               R  +G   Q   L   LT  E++     +     +  +  + 
Sbjct: 64  IDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRK 123

Query: 112 EISNMIVDLGIPHK-RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
                +    +  +      N LSGG Q+++++A A       ++ D+PT  +D  +   
Sbjct: 124 RALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEK 183

Query: 171 IWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
           I +LL K  +  G+TV++ TH ++ A   G+RI  +  G+++
Sbjct: 184 IMQLLKKLNEEDGKTVVVVTHDINVAR-FGERIIYLKDGEVE 224

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  136 bits (344), Expect = 1e-40
 Identities = 37/204 (18%), Positives = 86/204 (42%), Gaps = 15/204 (7%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
           I++LS  +   K  +  + +   +  + +F G NG GKTT +  +   L    G      
Sbjct: 5   IRDLSVGY--DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG 62

Query: 63  HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
                 +T ++  +   P+   +  K++VE+++   + L  V  +  ++  +   V++  
Sbjct: 63  VP----ITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD 118

Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY--KK 180
             K+      LS G  R++ +A   +  +   +LD+P   +D  S+  + + +++   +K
Sbjct: 119 LKKK---LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEK 175

Query: 181 GRTVILTTHYMDEADLLGDRIAII 204
           G  +I +   +       D    +
Sbjct: 176 GIVIISSREELSYC----DVNENL 195

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score =  137 bits (347), Expect = 2e-40
 Identities = 57/219 (26%), Positives = 107/219 (48%), Gaps = 9/219 (4%)

Query: 3   IQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
           I ++S ++ +     +  +N++  + +  +F+G +G GK+T I+++     V+SG   I 
Sbjct: 19  IDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILID 78

Query: 62  NHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWF---YSQLKQVPKDLAQLEISNMI 117
            H+I+     ++R  +G+  Q N LF   TV+E++      +  ++V +        + I
Sbjct: 79  GHNIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGRPTATDEEVVEAAKMANAHDFI 137

Query: 118 VDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
           ++L  G   +       LSGG +++LS+A  F+     +ILDE TS +D  S   I E L
Sbjct: 138 MNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEAL 197

Query: 176 IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
               K RT ++  H +       D+I +I  G +   G+
Sbjct: 198 DVLSKDRTTLIVAHRLSTI-THADKIVVIENGHIVETGT 235

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score =  134 bits (339), Expect = 2e-39
 Identities = 44/218 (20%), Positives = 90/218 (41%), Gaps = 7/218 (3%)

Query: 3   IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
            +++   + + +  +  ++     + I +F G +G GK+T  S+L      ++G   I  
Sbjct: 4   ARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDG 63

Query: 63  HDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWF-----YSQLKQVPKDLAQLEISNM 116
             I    +   R  +G   Q +A+      E   +        +      DLA       
Sbjct: 64  QPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVE 123

Query: 117 IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI 176
            +   +  +       +SGG +++L++A AF+   + ++LDE T+ +D  S   + + L 
Sbjct: 124 NMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD 183

Query: 177 KYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
              KGRT ++  H +    +  D+I  I  G++   G 
Sbjct: 184 SLMKGRTTLVIAHRLSTI-VDADKIYFIEKGQITGSGK 220

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score =  132 bits (334), Expect = 1e-38
 Identities = 59/213 (27%), Positives = 103/213 (48%), Gaps = 11/213 (5%)

Query: 5   NLSKRFPNGKLAVNGLNVNFYEDQ-ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
              KR  N +L     NV+F   +     LG  GAGK+  + ++ G++    G  ++   
Sbjct: 6   RAEKRLGNFRL-----NVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGA 60

Query: 64  DIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP 123
           DI T +   RR +G  PQ  ALF  L+V  ++ +  +   V +      +  M   LGI 
Sbjct: 61  DI-TPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLR--NVERVERDRRVREMAEKLGIA 117

Query: 124 HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKG 181
           H        LSGG ++++++A A +   R ++LDEP S VD  ++  + E L  ++ +  
Sbjct: 118 HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD 177

Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
             ++  TH + EA +L D +A++  G++   G 
Sbjct: 178 VPILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score =  130 bits (328), Expect = 8e-38
 Identities = 39/223 (17%), Positives = 89/223 (39%), Gaps = 20/223 (8%)

Query: 1   MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
           M +Q++++        +  L+      +I   +G NGAGK+T ++ + GM     G+ + 
Sbjct: 4   MQLQDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQF 57

Query: 61  YNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
               +     T +        Q         V  ++  +   K   + L       +   
Sbjct: 58  AGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLND-----VAGA 112

Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFI-------GGSRTVILDEPTSGVDPYSRRSIW 172
           L +  K     N LSGG  +++ +A   +          + ++LDEP + +D   + ++ 
Sbjct: 113 LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD 172

Query: 173 ELLIK-YKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           ++L    ++G  +++++H ++       R  ++  GK+   G 
Sbjct: 173 KILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 215

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score =  128 bits (324), Expect = 5e-37
 Identities = 47/219 (21%), Positives = 99/219 (45%), Gaps = 8/219 (3%)

Query: 3   IQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
            +N++  +P     A+  +N+     +  + +G +G+GK+T  S++     +  G   + 
Sbjct: 16  FRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMD 75

Query: 62  NHDIRTDM-TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ---LKQVPKDLAQLEISNMI 117
            HD+R     ++R  + +  Q   LF+        +  ++    +Q+ +        + I
Sbjct: 76  GHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFI 135

Query: 118 VDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
             +  G+          LSGG ++++++A A +  S  +ILDE TS +D  S R+I   L
Sbjct: 136 NKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL 195

Query: 176 IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
            + +K RT ++  H +   +   D I ++  G +   G+
Sbjct: 196 DELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGT 233

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score =  128 bits (322), Expect = 8e-37
 Identities = 58/245 (23%), Positives = 107/245 (43%), Gaps = 14/245 (5%)

Query: 3   IQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
            +N+  R+     + ++ +N++  + ++   +G +G+GK+T   ++       +G   I 
Sbjct: 4   FRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID 63

Query: 62  NHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWF--YSQLKQVPKDLAQLEISNMIV 118
            HD+   D   +RR +GV  Q N L ++  ++          +++V          + I 
Sbjct: 64  GHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFIS 123

Query: 119 DL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI 176
           +L  G           LSGG ++++++A A +   + +I DE TS +D  S   I   + 
Sbjct: 124 ELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 183

Query: 177 KYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS-SVFLKNSFARGYYLSLDMKSA 235
           K  KGRTVI+  H +       DRI ++  GK+   G     L        Y  L     
Sbjct: 184 KICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKELLSEP--ESLYSYL----Y 236

Query: 236 QLQAE 240
           QLQ++
Sbjct: 237 QLQSD 241

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  124 bits (313), Expect = 4e-35
 Identities = 44/209 (21%), Positives = 85/209 (40%), Gaps = 19/209 (9%)

Query: 11  PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMT 70
             G   +  +N+N  + ++ +  G  G+GKT+ + +++G L  S G  K           
Sbjct: 46  LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR------- 98

Query: 71  TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD--LAQLEISNMIVDL--GIPHKR 126
                +  C Q++ +    T++E++ F     +      +   ++   I           
Sbjct: 99  -----VSFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVL 152

Query: 127 TSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI-KYKKGRTVI 185
                TLSGG + ++S+A A    +   +LD P   +D ++   ++E  + K    +T I
Sbjct: 153 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 212

Query: 186 LTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           L T  M E     D+I I+  G     G+
Sbjct: 213 LVTSKM-EHLRKADKILILHQGSSYFYGT 240

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (297), Expect = 5e-33
 Identities = 48/222 (21%), Positives = 101/222 (45%), Gaps = 11/222 (4%)

Query: 3   IQNLSKRFPNGK--LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
            Q++S  +PN    L + GL       ++T+ +G NG+GK+T  ++L  +   + G   +
Sbjct: 14  FQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLL 73

Query: 61  YNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ---LKQVPKDLAQLEISNM 116
               +   +   + R +    Q   +F +   E   +  +Q   ++++     +    + 
Sbjct: 74  DGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSF 133

Query: 117 IVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
           I  L  G   +     + LSGG ++ +++A A I     +ILD+ TS +D  S+  + +L
Sbjct: 134 ISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQL 193

Query: 175 LIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
           L +  +   R+V+L T ++   +   D I  +  G ++  G+
Sbjct: 194 LYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAIREGGT 234

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 66.9 bits (162), Expect = 2e-14
 Identities = 21/178 (11%), Positives = 41/178 (23%), Gaps = 27/178 (15%)

Query: 33  LGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM-TTIRRSLGVCPQYNALFDKLTV 91
            G  G GKTT +  ++  L   +                T  R +    +      K   
Sbjct: 6   TGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFT 65

Query: 92  EEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGS 151
            + +     +     +                                + +   A     
Sbjct: 66  SKKLVGSYGVNVQYFE-------------------------ELAIPILERAYREAKKDRR 100

Query: 152 RTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
           + +I+DE         +       I +     V+ T    D   L+   I  +    L
Sbjct: 101 KVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLV-KEIRRLPGAVL 157

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.9 bits (102), Expect = 9e-06
 Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 15/133 (11%)

Query: 78  VCPQYNALFDKLTVE-----EHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANT 132
           V    +A++ +LT       E     + L    +D               P KR      
Sbjct: 275 VSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHAT--PPLKRFKDMEY 332

Query: 133 LSGGMQRKLSVAMAF----IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRT-VILT 187
           LSGG +   ++A+ F       S   +LDE  + +D  + + I   + +++      I+ 
Sbjct: 333 LSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVI 392

Query: 188 TH---YMDEADLL 197
           +      +++D L
Sbjct: 393 SLKNTMFEKSDAL 405

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	251
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.93
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.82
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.81
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	99.59
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	99.39
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	99.17
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	98.74
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	98.54
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	98.05
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.81
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.81
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.79
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.76
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.74
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.72
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.7
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.7
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.66
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.65
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.63
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.61
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.55
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.52
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.5
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.46
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.45
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.45
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.43
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.41
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.4
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.39
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.33
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.33
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.32
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.3
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.25
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.25
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.24
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.21
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.19
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.19
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.13
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.12
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.11
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.09
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.09
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.09
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.08
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.05
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.05
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.04
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.03
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.02
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.0
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.98
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.96
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.94
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.93
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.93
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.92
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.9
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.89
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.89
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.86
d1okkd2	207	GTPase domain of the signal recognition particle r	96.85
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.84
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.84
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.82
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.82
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.78
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.78
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.77
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.76
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.74
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.72
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.72
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.69
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.67
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.66
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.66
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.66
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.65
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.65
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.6
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.6
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.58
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.58
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.57
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.57
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.56
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.56
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.54
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.52
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.51
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.5
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.46
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.46
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.44
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.44
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.44
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.42
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.39
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.38
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.37
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.32
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.3
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.29
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.29
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.29
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.28
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.26
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.25
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.23
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.23
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.23
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.22
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.19
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.18
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.16
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.16
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.15
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.13
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.12
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.09
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.03
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.96
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.93
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.93
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.92
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.91
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.9
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.89
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.89
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	95.88
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.84
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.84
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.8
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.78
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.77
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.75
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.75
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.75
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.74
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.74
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.74
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.72
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.72
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.7
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.7
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.67
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.65
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.62
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.61
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.57
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.55
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.54
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.54
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.48
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.46
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.45
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.42
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.41
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.41
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.4
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.4
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.39
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.38
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.3
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.3
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.27
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.25
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	95.24
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.23
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.23
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.23
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.2
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	95.19
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.17
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.15
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.13
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	95.13
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.13
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.07
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	95.04
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	95.02
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	94.99
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.95
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.94
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.91
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	94.86
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.81
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.76
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	94.72
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	94.6
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	94.57
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.38
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.34
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.34
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.11
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	94.08
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	93.92
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	93.89
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	93.86
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	93.85
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	93.67
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.18
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.11
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.06
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	92.16
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	92.1
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	92.04
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.89
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	91.74
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.57
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.42
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	91.31
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	91.22
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.12
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	91.08
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	91.06
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	91.0
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	90.58
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	90.5
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.4
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	89.88
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	89.34
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	89.26
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	89.25
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	88.91
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	88.54
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	88.3
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	87.82
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	87.74
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	87.56
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	87.48
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	87.26
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	87.2
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	86.67
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	86.25
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	86.06
d1tuea_	205	Replication protein E1 helicase domain {Human papi	85.55
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	85.43
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	85.3
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	85.26
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	84.56
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	83.94
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	82.47
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	81.79

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.3e-71  Score=476.12  Aligned_cols=219  Identities=30%  Similarity=0.388  Sum_probs=199.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++||+|+|+ +++||+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... ..+++|||||
T Consensus         7 I~v~nlsk~yg-~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~-~~~r~ig~v~   84 (239)
T d1v43a3           7 VKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP-PKDRNISMVF   84 (239)
T ss_dssp             EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGGTEEEEE
T ss_pred             EEEEEEEEEEC-CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCC-cccceEEEEe
Confidence            57999999996 588999999999999999999999999999999999999999999999999996533 2357899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+|+++||+||+.|+...++.++++.++++.++++.++|++..+++|.+|||||||||+|||||+.+|++|||||||
T Consensus        85 Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPt  164 (239)
T d1v43a3          85 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL  164 (239)
T ss_dssp             C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             echhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCc
Confidence            99999999999999999988888888889999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      +||||.++..++++|++++ + |+|||+||||++++.++|||+++|++|+|++.|+++++...
T Consensus       165 s~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~  227 (239)
T d1v43a3         165 SNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR  227 (239)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            9999999999999999984 4 99999999999999999999999999999999999887543

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=5.8e-71  Score=472.56  Aligned_cols=219  Identities=27%  Similarity=0.385  Sum_probs=206.0

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh-----HHhhcc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM-----TTIRRS   75 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~-----~~~~~~   75 (251)
                      |+++||+|+|+ +.+||+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++....     ...+++
T Consensus         4 i~v~nl~k~yg-~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~   82 (240)
T d1g2912           4 VRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD   82 (240)
T ss_dssp             EEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred             EEEEeEEEEEC-CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhccccccc
Confidence            58999999996 488999999999999999999999999999999999999999999999999985321     123578


Q ss_pred             eEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367          76 LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI  155 (251)
Q Consensus        76 i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll  155 (251)
                      ||||||++.+|+.+||+||+.++...++.+.++.++++.++++.++|.+..+++|.+|||||||||+|||||+.+|++||
T Consensus        83 ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLl  162 (240)
T d1g2912          83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFL  162 (240)
T ss_dssp             EEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred             ceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            99999999999999999999999999998988889999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         156 LDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       156 lDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      |||||+|||+.++..++++|+++. + |.|||++|||++++.++|||+++|++|+|++.|+++++..
T Consensus       163 lDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~  229 (240)
T d1g2912         163 MDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD  229 (240)
T ss_dssp             EECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             ecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            999999999999999999999984 4 9999999999999999999999999999999999988754

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-71  Score=473.68  Aligned_cols=218  Identities=26%  Similarity=0.424  Sum_probs=165.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++||+|+|+ ++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... ..+++|||||
T Consensus         1 Iev~nv~k~yg-~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~-~~~r~ig~v~   78 (232)
T d2awna2           1 VQLQNVTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP-PAERGVGMVF   78 (232)
T ss_dssp             EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSC-GGGTCEEEEC
T ss_pred             CEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCc-hhhceeeeec
Confidence            58999999996 488999999999999999999999999999999999999999999999999986432 3457899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+|+++||+||+.|+...++.++++.++++.++++.++|.+..+++|.+|||||||||+|||||+.+|++|||||||
T Consensus        79 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPt  158 (232)
T d2awna2          79 QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL  158 (232)
T ss_dssp             SSCCC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTT
T ss_pred             cccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            99999999999999999988888888888889999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhh-h-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         161 SGVDPYSRRSIWELLIKY-K-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l-~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      +||||.++..++++|+++ + .|+|||++|||++++..+|||+++|++|++++.|+++++..
T Consensus       159 s~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~  220 (232)
T d2awna2         159 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH  220 (232)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence            999999999999999998 3 49999999999999999999999999999999999987754

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=7.1e-71  Score=471.93  Aligned_cols=221  Identities=25%  Similarity=0.378  Sum_probs=206.2

Q ss_pred             CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC----hHHhhcc
Q psy7367           1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD----MTTIRRS   75 (251)
Q Consensus         1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~----~~~~~~~   75 (251)
                      |+++||+|+|++ ...||+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...    ....|++
T Consensus         4 i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~   83 (242)
T d1oxxk2           4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRK   83 (242)
T ss_dssp             EEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSC
T ss_pred             EEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhcc
Confidence            578999999953 36799999999999999999999999999999999999999999999999998532    2234678


Q ss_pred             eEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367          76 LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI  155 (251)
Q Consensus        76 i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll  155 (251)
                      ||||||++.+||++||+||+.|+.+.++.++++.++++.++++.++|++..+++|++|||||||||+|||||+.+|++||
T Consensus        84 ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~lll  163 (242)
T d1oxxk2          84 IGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLL  163 (242)
T ss_dssp             EEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred             ceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhccccee
Confidence            99999999999999999999999988888888889999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         156 LDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       156 lDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      |||||++|||.++..++++|++++ + |.|||++|||++++.++|||+++|++|+|++.|+|+++.+.
T Consensus       164 lDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~  231 (242)
T d1oxxk2         164 LDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN  231 (242)
T ss_dssp             EESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             ecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            999999999999999999999984 4 99999999999999999999999999999999999887543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-70  Score=470.02  Aligned_cols=219  Identities=28%  Similarity=0.425  Sum_probs=204.8

Q ss_pred             CEEEeEEEEeCCCc---ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-Ch---HHhh
Q psy7367           1 MAIQNLSKRFPNGK---LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DM---TTIR   73 (251)
Q Consensus         1 l~i~~l~~~y~~~~---~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~---~~~~   73 (251)
                      |+++||+|+|+.+.   .||+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ..   ..+|
T Consensus         2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r   81 (240)
T d3dhwc1           2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR   81 (240)
T ss_dssp             EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred             EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh
Confidence            58999999996432   58999999999999999999999999999999999999999999999999854 22   2456


Q ss_pred             cceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCE
Q psy7367          74 RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRT  153 (251)
Q Consensus        74 ~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~l  153 (251)
                      ++||||||++.+++++||+||+.++.+.++.+.++.++++.++|+.+||.+..+++|.+|||||||||+|||||+.+|++
T Consensus        82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~l  161 (240)
T d3dhwc1          82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKV  161 (240)
T ss_dssp             HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSE
T ss_pred             ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCe
Confidence            78999999999999999999999999988888888889999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         154 VILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       154 lllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      |||||||+|||+.++..++++|++++ + |.|||++|||++++..+|||+++|++|+|++.|+++++.
T Consensus       162 LllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~  229 (240)
T d3dhwc1         162 LLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF  229 (240)
T ss_dssp             EEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred             EEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            99999999999999999999999984 4 999999999999999999999999999999999998764

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=1.2e-69  Score=461.17  Aligned_cols=214  Identities=28%  Similarity=0.427  Sum_probs=199.3

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++||||+|++  .+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... ..+++|||||
T Consensus         2 i~v~nlsk~y~~--~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~-~~~r~ig~v~   78 (229)
T d3d31a2           2 IEIESLSRKWKN--FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS-PEKHDIAFVY   78 (229)
T ss_dssp             EEEEEEEEECSS--CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSC-HHHHTCEEEC
T ss_pred             EEEEEEEEEeCC--EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccc-hhHhcceeec
Confidence            589999999963  5999999999999999999999999999999999999999999999999996533 2367899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+|+++||+||+.|+...++....   +++.++++.+++.+..++++.+|||||||||+|||||+++|++|||||||
T Consensus        79 Q~~~l~~~~tV~enl~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPt  155 (229)
T d3d31a2          79 QNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPL  155 (229)
T ss_dssp             TTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred             cccccCccccHHHHHHHHHhhccccHH---HHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCC
Confidence            999999999999999999988776543   46889999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhh-hC-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         161 SGVDPYSRRSIWELLIKY-KK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l-~~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      +||||.++..++++|+++ ++ |.|||++|||++++.++|||+++|++|++++.|+++++.+
T Consensus       156 s~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~  217 (229)
T d3d31a2         156 SALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE  217 (229)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred             cCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            999999999999999998 44 9999999999999999999999999999999999988754

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=8.1e-68  Score=453.81  Aligned_cols=222  Identities=27%  Similarity=0.440  Sum_probs=211.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++||+|+|+ +++||+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.......++.+||+|
T Consensus         3 I~v~nl~k~yg-~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vp   81 (238)
T d1vpla_           3 VVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLP   81 (238)
T ss_dssp             EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred             EEEEeEEEEEC-CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEee
Confidence            57999999996 48899999999999999999999999999999999999999999999999999776667788999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+|+++|+.||+.|+..+++.+..+..+.++.+++.+++.+..++++.+||||||||++|||||+++|++|||||||
T Consensus        82 q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt  161 (238)
T d1vpla_          82 EEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPT  161 (238)
T ss_dssp             TTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             eccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence            99999999999999999998888888888888999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhc
Q psy7367         161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFA  223 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~  223 (251)
                      +||||.+++.+++++++++ +|+|||++|||++++..+|||+++|++|++++.|+++++...+.
T Consensus       162 ~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~  225 (238)
T d1vpla_         162 SGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK  225 (238)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhccC
Confidence            9999999999999999985 69999999999999999999999999999999999999876654

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=6.3e-68  Score=451.33  Aligned_cols=214  Identities=24%  Similarity=0.373  Sum_probs=193.0

Q ss_pred             CEEEeEEEEeCCCc---ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChH---Hh-
Q psy7367           1 MAIQNLSKRFPNGK---LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMT---TI-   72 (251)
Q Consensus         1 l~i~~l~~~y~~~~---~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~---~~-   72 (251)
                      |+++||+|+|+.+.   .||+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++.. ...   .+ 
T Consensus         2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r   81 (230)
T d1l2ta_           2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR   81 (230)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence            58999999996432   48999999999999999999999999999999999999999999999999964 222   22 


Q ss_pred             hcceEEEccCCCCCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLK---QVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      +++||||||++.+++.+||+||+.++..+.   +.+..+..+++.++++.++|.+ ..+++|.+|||||||||+|||||+
T Consensus        82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~  161 (230)
T d1l2ta_          82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALA  161 (230)
T ss_dssp             HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred             cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhh
Confidence            457999999999999999999999987754   3456677788999999999986 579999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhh-hC-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCH
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKY-KK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS  215 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l-~~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~  215 (251)
                      .+|++|||||||++|||.+++.++++|+++ ++ |+|||++|||++++ ++|||+++|++|+|+++|++
T Consensus       162 ~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~~g~~  229 (230)
T d1l2ta_         162 NNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKL  229 (230)
T ss_dssp             TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEEC
T ss_pred             cCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEECCEEEEeccC
Confidence            999999999999999999999999999998 44 99999999999987 69999999999999998863

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=2.1e-67  Score=456.03  Aligned_cols=220  Identities=23%  Similarity=0.361  Sum_probs=202.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC------------
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD------------   68 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~------------   68 (251)
                      |+++||+|+|+ +..||+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++...            
T Consensus         3 Lev~nl~k~yg-~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~   81 (258)
T d1b0ua_           3 LHVIDLHKRYG-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK   81 (258)
T ss_dssp             EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred             EEEEEEEEEEC-CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccH
Confidence            58999999996 48899999999999999999999999999999999999999999999999998421            


Q ss_pred             --hHHhhcceEEEccCCCCCCCCCHHHHHHHHH-HhcCCChHHHHHHHHHHHHHcCCCcc-cCCCCCcCChhHHHHHHHH
Q psy7367          69 --MTTIRRSLGVCPQYNALFDKLTVEEHMWFYS-QLKQVPKDLAQLEISNMIVDLGIPHK-RTSLANTLSGGMQRKLSVA  144 (251)
Q Consensus        69 --~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~kqrv~ia  144 (251)
                        ....+++||||||++.+++.+||+||+.++. ...+.+..+.++++.++++.+++.+. .+++|.+|||||||||+||
T Consensus        82 ~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iA  161 (258)
T d1b0ua_          82 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA  161 (258)
T ss_dssp             HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHH
T ss_pred             hHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHH
Confidence              1245678999999999999999999999864 45667778888899999999999874 5788999999999999999


Q ss_pred             HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         145 MAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       145 ~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      |||+.+|++|||||||+|||+.++..++++|++++ +|+|||+||||++++..+||||++|++|+|+++|+++++...
T Consensus       162 raL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~~~  239 (258)
T d1b0ua_         162 RALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN  239 (258)
T ss_dssp             HHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            99999999999999999999999999999999985 699999999999999999999999999999999999887543

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=9e-67  Score=447.94  Aligned_cols=218  Identities=23%  Similarity=0.396  Sum_probs=196.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh-HH-hhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM-TT-IRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~-~~-~~~~i~~   78 (251)
                      |+++||+|+|+ +..||+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.... .. .|..|+|
T Consensus         7 Lev~~l~k~yg-~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~   85 (240)
T d1ji0a_           7 LEVQSLHVYYG-AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIAL   85 (240)
T ss_dssp             EEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEE
T ss_pred             EEEeeEEEEEC-CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccc
Confidence            58999999996 488999999999999999999999999999999999999999999999999996533 22 3457999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHc-CCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL-GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD  157 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD  157 (251)
                      +||++.+|+.+||+||+.++...+. .....++.++++++.+ ++.+..++++++|||||||||+|||||+.+|++||||
T Consensus        86 ~~q~~~l~~~ltv~en~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllD  164 (240)
T d1ji0a_          86 VPEGRRIFPELTVYENLMMGAYNRK-DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMD  164 (240)
T ss_dssp             ECSSCCCCTTSBHHHHHHGGGTTCC-CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             cCcccccCCcccHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeec
Confidence            9999999999999999988765443 3344555677788877 6888999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         158 EPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       158 EPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      |||+||||.++..++++|++++ +|+|||++|||++++.++|||+++|++|+++++|+++++.+
T Consensus       165 EPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~  228 (240)
T d1ji0a_         165 EPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD  228 (240)
T ss_dssp             CTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence            9999999999999999999985 69999999999999999999999999999999999987743

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=3e-66  Score=448.41  Aligned_cols=218  Identities=22%  Similarity=0.316  Sum_probs=197.2

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHH-hhcceEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTT-IRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~-~~~~i~~   78 (251)
                      |+++||+|+|+ +.+||+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. +..+ .+..|+|
T Consensus         5 L~v~nlsk~yg-~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~   83 (254)
T d1g6ha_           5 LRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVR   83 (254)
T ss_dssp             EEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEE
T ss_pred             EEEEEEEEEEC-CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCc
Confidence            58999999996 4889999999999999999999999999999999999999999999999999964 3333 4557999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHh-------------cCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQL-------------KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAM  145 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~-------------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~  145 (251)
                      +||++.+|+++||+||+.++...             .....++..+++.++++.+++.+..++++.+|||||||||+|||
T Consensus        84 v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAr  163 (254)
T d1g6ha_          84 TFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGR  163 (254)
T ss_dssp             CCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred             cCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHH
Confidence            99999999999999999875321             11233455677889999999999999999999999999999999


Q ss_pred             HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         146 AFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       146 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      ||+.+|++|||||||+||||.++..++++|++++ +|+|||++|||++++.++||||++|++|+++++|+++++.
T Consensus       164 aL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~  238 (254)
T d1g6ha_         164 ALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEI  238 (254)
T ss_dssp             HHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHHH
T ss_pred             HHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecHHHHh
Confidence            9999999999999999999999999999999985 6999999999999999999999999999999999987653

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=4.8e-65  Score=434.90  Aligned_cols=212  Identities=26%  Similarity=0.386  Sum_probs=192.9

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      +++ ++.|+|++ .. + ||||++. +|+++|+||||||||||+|+|+|+++|++|+|+++|+++.... ..+++|||||
T Consensus         3 l~v-~~~k~~g~-~~-~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~-~~~r~ig~v~   76 (240)
T d2onka1           3 LKV-RAEKRLGN-FR-L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP-PERRGIGFVP   76 (240)
T ss_dssp             EEE-EEEEEETT-EE-E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-TTTSCCBCCC
T ss_pred             EEE-EEEEEECC-EE-E-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCC-HHHcCceeec
Confidence            356 67899964 43 4 8999995 6899999999999999999999999999999999999996532 3467899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |++.+||++||+||+.|+.+  ..++.+.++++.++++.+||.+..+++|.+|||||||||+|||||+.+|++|||||||
T Consensus        77 Q~~~l~~~ltV~enl~~~l~--~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPt  154 (240)
T d2onka1          77 QDYALFPHLSVYRNIAYGLR--NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPL  154 (240)
T ss_dssp             SSCCCCTTSCHHHHHHTTCT--TSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred             cchhhcccchhhHhhhhhhc--ccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCcc
Confidence            99999999999999998753  4566777788999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      +||||..+..++++++++. + |.|||++|||++++.++|||+++|++|++++.|+++++.+
T Consensus       155 s~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~  216 (240)
T d2onka1         155 SAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS  216 (240)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhc
Confidence            9999999999999999984 4 9999999999999999999999999999999999988754

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=5.2e-63  Score=424.94  Aligned_cols=214  Identities=20%  Similarity=0.331  Sum_probs=183.6

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      |+++||+|+|++++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. +...+|++||||
T Consensus         2 le~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v   81 (242)
T d1mv5a_           2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV   81 (242)
T ss_dssp             EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred             EEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEE
Confidence            5899999999766789999999999999999999999999999999999999999999999999965 445678899999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCcCChhHHHHHHHHHHHc
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----------KRTSLANTLSGGMQRKLSVAMAFI  148 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrv~ia~al~  148 (251)
                      ||++.+|+. |++||+.++.... ....    .+.++++..++..           .....+.+|||||||||+|||||+
T Consensus        82 ~Q~~~lf~~-ti~eNi~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~  155 (242)
T d1mv5a_          82 SQDSAIMAG-TIRENLTYGLEGD-YTDE----DLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFL  155 (242)
T ss_dssp             CCSSCCCCE-EHHHHTTSCTTSC-SCHH----HHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred             ccccccCCc-chhhheecccccc-cchh----hHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence            999999986 9999997753321 2222    2333444433322           223345679999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      .+|++||||||||+||+.++..+++.|+++.+|+|||++||+++.+. .||||++|++|+|++.|+++++.+.
T Consensus       156 ~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~~G~iv~~G~~~eLl~~  227 (242)
T d1mv5a_         156 RNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVAT  227 (242)
T ss_dssp             HCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHHHHH
T ss_pred             cCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence            99999999999999999999999999999988999999999999886 5999999999999999999887543

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.9e-62  Score=418.35  Aligned_cols=217  Identities=24%  Similarity=0.394  Sum_probs=184.0

Q ss_pred             CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      |+++||+|+|+. ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ....+|++|+|
T Consensus         2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~   81 (241)
T d2pmka1           2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV   81 (241)
T ss_dssp             EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred             eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEE
Confidence            579999999953 4579999999999999999999999999999999999999999999999999965 56678899999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHH-----HHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGS  151 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p  151 (251)
                      |||++.+|+ .||+||+.++...  ...++....     +.+.++.+  +++......+..|||||||||+|||||+.+|
T Consensus        82 v~Q~~~lf~-~Ti~eNi~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p  158 (241)
T d2pmka1          82 VLQDNVLLN-RSIIDNISLANPG--MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP  158 (241)
T ss_dssp             ECSSCCCTT-SBHHHHHCTTSTT--CCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred             EecccccCC-ccccccccccCcc--ccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhccc
Confidence            999999886 5999999885432  222222111     11122221  2233455677899999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         152 RTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       152 ~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      ++||||||||+||+.+.+.+++.|+++.+++|||+|||+++.+. .||||++|++|+|++.|+++++...
T Consensus       159 ~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~~G~Iv~~G~~~ell~~  227 (241)
T d2pmka1         159 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKELLSE  227 (241)
T ss_dssp             SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEEEEECHHHHHHS
T ss_pred             chhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence            99999999999999999999999999988999999999999885 6999999999999999999887543

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-62  Score=420.94  Aligned_cols=218  Identities=22%  Similarity=0.375  Sum_probs=187.1

Q ss_pred             CEEEeEEEEeCCC--cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367           1 MAIQNLSKRFPNG--KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG   77 (251)
Q Consensus         1 l~i~~l~~~y~~~--~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~   77 (251)
                      |+++||+|+|++.  +.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++.. +...+|++|+
T Consensus        12 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~   91 (251)
T d1jj7a_          12 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVA   91 (251)
T ss_dssp             EEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEE
T ss_pred             EEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHhh
Confidence            5799999999642  359999999999999999999999999999999999999999999999999965 5567788999


Q ss_pred             EEccCCCCCCCCCHHHHHHHHHHhcCCChHHH-----HHHHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccC
Q psy7367          78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLA-----QLEISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGG  150 (251)
Q Consensus        78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~  150 (251)
                      ||||++.+|+ .||+||+.++..... .....     ...+.+.++.+  +++...++.+.+|||||||||+|||||+++
T Consensus        92 ~v~Q~~~lf~-~tv~eni~~g~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~  169 (251)
T d1jj7a_          92 AVGQEPQVFG-RSLQENIAYGLTQKP-TMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRK  169 (251)
T ss_dssp             EECSSCCCCS-SBHHHHHHCSCSSCC-CHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTC
T ss_pred             hccccccccC-cchhhhhhhhhcccc-hHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccC
Confidence            9999999986 599999988643221 11111     11233445555  556667788899999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         151 SRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       151 p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      |++||||||||+||+.++..+++.|.++. + ++|||+||||++.+. .||||++|++|+|++.|+++++.+.
T Consensus       170 p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~-~aDrI~vl~~G~iv~~Gt~~eLl~~  241 (251)
T d1jj7a_         170 PCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAIREGGTHQQLMEK  241 (251)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHH-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred             CcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence            99999999999999999999999999984 3 899999999999885 5999999999999999999988654

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.2e-60  Score=412.62  Aligned_cols=218  Identities=22%  Similarity=0.402  Sum_probs=187.9

Q ss_pred             CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      |+++||+|+|+++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++.. +...+|+.|+|
T Consensus        14 I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~   93 (253)
T d3b60a1          14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVAL   93 (253)
T ss_dssp             EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEE
T ss_pred             EEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEEE
Confidence            5799999999643 469999999999999999999999999999999999999999999999999965 55678889999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHH-----HHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGS  151 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p  151 (251)
                      +||++.+|+. |+++|+.++. ......++..+.     +.+.++.+  |++....+.+.+|||||||||+|||||+.+|
T Consensus        94 v~Q~~~l~~~-ti~~n~~~~~-~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p  171 (253)
T d3b60a1          94 VSQNVHLFND-TVANNIAYAR-TEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDS  171 (253)
T ss_dssp             ECSSCCCCSS-BHHHHHHTTT-TSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCC
T ss_pred             EeeccccCCc-chhhhhhhcC-cccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCC
Confidence            9999999875 9999998753 222333322221     22334444  4556667788999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         152 RTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       152 ~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      ++||||||||+||+.++..+++.|+++.+++|||+||||++.+. .||||++|++|+|++.|+++++.+.
T Consensus       172 ~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~v~vl~~G~Iv~~G~~~eLl~~  240 (253)
T d3b60a1         172 PILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQ  240 (253)
T ss_dssp             SEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred             CEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence            99999999999999999999999999988999999999999885 6999999999999999999887654

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=4.4e-60  Score=409.07  Aligned_cols=213  Identities=26%  Similarity=0.380  Sum_probs=184.9

Q ss_pred             CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367           1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV   78 (251)
Q Consensus         1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~   78 (251)
                      |+++||+|+|+++ +++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+|++|+|
T Consensus        17 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~   96 (255)
T d2hyda1          17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGL   96 (255)
T ss_dssp             EEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEE
T ss_pred             EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheeee
Confidence            5799999999643 579999999999999999999999999999999999999999999999999964 56678899999


Q ss_pred             EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-----------cccCCCCCcCChhHHHHHHHHHHH
Q psy7367          79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-----------HKRTSLANTLSGGMQRKLSVAMAF  147 (251)
Q Consensus        79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~kqrv~ia~al  147 (251)
                      |||++.+|+ .||+|||.++...  ...    +++.++++..++.           ......+.+||||||||++|||||
T Consensus        97 v~Q~~~lf~-~Ti~eNi~~g~~~--~~~----~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal  169 (255)
T d2hyda1          97 VQQDNILFS-DTVKENILLGRPT--ATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF  169 (255)
T ss_dssp             ECSSCCCCS-SBHHHHHGGGCSS--CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred             eeccccCCC-CCHHHHHhccCcC--CCH----HHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHH
Confidence            999999986 5999999876321  222    2344555555543           233445678999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS  221 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  221 (251)
                      +++|++||||||||+||+.+...+++.|.++.+++|||+|||+++.+. .||||++|++|+|++.|+++++.+.
T Consensus       170 ~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~-~~D~ii~l~~G~iv~~G~~~eLl~~  242 (255)
T d2hyda1         170 LNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENGHIVETGTHRELIAK  242 (255)
T ss_dssp             HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TCSEEEEEETTEEEEEECHHHHHHT
T ss_pred             hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence            999999999999999999999999999999988999999999999885 6999999999999999999887554

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4e-57  Score=385.97  Aligned_cols=208  Identities=18%  Similarity=0.262  Sum_probs=184.1

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC   79 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v   79 (251)
                      |+++|++++|     +|++|||+|++||++||+||||||||||+++|+|+. |++|+|.++|+++.. ....++...+|+
T Consensus         4 l~~~dv~~~~-----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~~   77 (231)
T d1l7vc_           4 MQLQDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYL   77 (231)
T ss_dssp             EEEEEECCTT-----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEEE
T ss_pred             EEEECcccCc-----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhceee
Confidence            5788987543     699999999999999999999999999999999976 689999999999854 344566779999


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHcc-------CCC
Q psy7367          80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIG-------GSR  152 (251)
Q Consensus        80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~-------~p~  152 (251)
                      +|........++++++.++...     ....+.++++++.+++.+..++++.+|||||||||+|||||++       +|+
T Consensus        78 ~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~  152 (231)
T d1l7vc_          78 SQQQTPPFATPVWHYLTLHQHD-----KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQ  152 (231)
T ss_dssp             CSCCCCCSSCBHHHHHHHHCSC-----TTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCC
T ss_pred             eccccCCccccHHHHhhhccch-----hhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCC
Confidence            9998766678999999875321     1223567889999999999999999999999999999999997       779


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367         153 TVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK  219 (251)
Q Consensus       153 llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  219 (251)
                      +|||||||+|||+.++..+++++++++ +|+|||++|||++++.++|||+++|++|++++.|+++++.
T Consensus       153 llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~  220 (231)
T d1l7vc_         153 LLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL  220 (231)
T ss_dssp             EEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHS
T ss_pred             EEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHh
Confidence            999999999999999999999999985 6999999999999999999999999999999999998763

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=1.6e-54  Score=362.40  Aligned_cols=193  Identities=19%  Similarity=0.279  Sum_probs=169.7

Q ss_pred             CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367           1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP   80 (251)
Q Consensus         1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~   80 (251)
                      |+++||+++|+  +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.    ..+.+++|+|
T Consensus         3 lev~~ls~~y~--~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~----~~~~~i~~~~   76 (200)
T d1sgwa_           3 LEIRDLSVGYD--KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT----KVKGKIFFLP   76 (200)
T ss_dssp             EEEEEEEEESS--SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG----GGGGGEEEEC
T ss_pred             EEEEEEEEEeC--CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehh----HhcCcEEEEe
Confidence            58999999994  57999999999999999999999999999999999999999999999999874    3567899999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367          81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT  160 (251)
Q Consensus        81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt  160 (251)
                      |+..++..+|++|++.+...+++....  ++++.++++.+++.+. ++++.+|||||||||+|||||+.+|+++||||||
T Consensus        77 ~~~~~~~~~t~~~~l~~~~~~~~~~~~--~~~~~~~l~~~~~~~~-~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt  153 (200)
T d1sgwa_          77 EEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV  153 (200)
T ss_dssp             SSCCCCTTSBHHHHHHHHHHHTTCCCC--HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred             ecccCCCCcCHHHHHHHHHHhcCCccC--HHHHHHHHHHcCCccc-ccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcc
Confidence            999999999999999998877654432  2456778899988654 5679999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367         161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAA  206 (251)
Q Consensus       161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~  206 (251)
                      +|||+.++..+++.|.++. + +.+||.++|++    .+||++.+|++
T Consensus       154 ~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~~  197 (200)
T d1sgwa_         154 VAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLHK  197 (200)
T ss_dssp             TTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGGG
T ss_pred             cccCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhhheee
Confidence            9999999999999999874 3 66777777765    47999999864

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.7e-54  Score=374.44  Aligned_cols=187  Identities=23%  Similarity=0.367  Sum_probs=157.8

Q ss_pred             CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367          13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE   92 (251)
Q Consensus        13 ~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~   92 (251)
                      ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|            +|+|+||++.+|+. ||+
T Consensus        48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g------------~i~~v~Q~~~l~~~-tv~  114 (281)
T d1r0wa_          48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------RVSFCSQFSWIMPG-TIK  114 (281)
T ss_dssp             TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS------------CEEEECSSCCCCSE-EHH
T ss_pred             CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC------------EEEEEeccccccCc-eee
Confidence            47899999999999999999999999999999999999999999999987            38999999999875 999


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHc-------CCC----cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q psy7367          93 EHMWFYSQLKQVPKDLAQLEISNMIVDL-------GIP----HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTS  161 (251)
Q Consensus        93 e~l~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~----~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~  161 (251)
                      ||+.|+...   ....    ...+++..       .+.    ....+.+.+|||||||||+|||||+++|++|||||||+
T Consensus       115 eni~~~~~~---~~~~----~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts  187 (281)
T d1r0wa_         115 ENIIFGVSY---DEYR----YKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFG  187 (281)
T ss_dssp             HHHTTTSCC---CHHH----HHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCC
T ss_pred             ccccccccc---cchH----HHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccc
Confidence            999875422   1211    22222222       222    23445667899999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHH-hhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367         162 GVDPYSRRSIWELLI-KYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN  220 (251)
Q Consensus       162 gLD~~~~~~l~~~l~-~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  220 (251)
                      +||+.+++.+++.+. .+.+++|+|++||+++.+ ++||||++|++|++++.|+++++..
T Consensus       188 ~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l-~~aDrI~vl~~G~i~~~Gt~~eL~~  246 (281)
T d1r0wa_         188 YLDVFTEEQVFESCVCKLMANKTRILVTSKMEHL-RKADKILILHQGSSYFYGTFSELQS  246 (281)
T ss_dssp             SSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHH-HTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHH-HhCCEEEEEECCEEEEECCHHHHhc
Confidence            999999999998644 445689999999999887 5799999999999999999988754

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.82  E-value=8.2e-23  Score=163.69  Aligned_cols=157  Identities=11%  Similarity=-0.033  Sum_probs=101.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc-cCCCCCCCCCHHHHHHHHHHhcCCChHH
Q psy7367          30 TSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP-QYNALFDKLTVEEHMWFYSQLKQVPKDL  108 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~-q~~~l~~~ltv~e~l~~~~~~~~~~~~~  108 (251)
                      ++|+||||||||||+++|+|.++|+.|.+...+.+...........+.++. +...+.. .+.....    ...+     
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~-----   72 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS-KFFTSKK----LVGS-----   72 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEE-TTCCCSS----EETT-----
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhh-hhhhhhh----hhhh-----
Confidence            789999999999999999999999999999988765321111111111111 1111100 0000000    0000     


Q ss_pred             HHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhh-hC-CCeEEE
Q psy7367         109 AQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KK-GRTVIL  186 (251)
Q Consensus       109 ~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l-~~-g~tiii  186 (251)
                                 .    ..+....++|+|+++|.++++++..+|+++++|||....  .....+.+.+.+. +. +.++|+
T Consensus        73 -----------~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~~~~~~il~  135 (178)
T d1ye8a1          73 -----------Y----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQIMHDPNVNVVA  135 (178)
T ss_dssp             -----------E----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHHHTCTTSEEEE
T ss_pred             -----------h----hcCcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccc--hhhHHHHHHHHHHhccCCCEEEE
Confidence                       0    001112358899999999999999999999999985443  2344556666654 43 799999


Q ss_pred             EeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367         187 TTHYMDEADLLGDRIAIIAAGKLQCCGS  214 (251)
Q Consensus       187 ~tHd~~~~~~~~d~i~~l~~G~i~~~g~  214 (251)
                      ++|+... ..+|+++..+.+|+++..+.
T Consensus       136 ~~h~~~~-~~~~~~i~~~~~~~i~~v~~  162 (178)
T d1ye8a1         136 TIPIRDV-HPLVKEIRRLPGAVLIELTP  162 (178)
T ss_dssp             ECCSSCC-SHHHHHHHTCTTCEEEECCT
T ss_pred             EEccHHH-HHhhceEEEEeCCEEEEECC
Confidence            9999754 56789999999999986543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.59  E-value=2.4e-14  Score=123.29  Aligned_cols=78  Identities=27%  Similarity=0.279  Sum_probs=66.8

Q ss_pred             CCCcCChhHHHHHHHHHH----HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEE-
Q psy7367         129 LANTLSGGMQRKLSVAMA----FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAI-  203 (251)
Q Consensus       129 ~~~~LSgG~kqrv~ia~a----l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~-  203 (251)
                      ....+|+|||+...++..    ....|.++++|||-++|+|..+..+.+.|++..++.=||++||.+..+. .+|+++. 
T Consensus       216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~-~~d~~~~v  294 (308)
T d1e69a_         216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVME-AADLLHGV  294 (308)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGG-GCSEEEEE
T ss_pred             hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hcccEEEE
Confidence            467899999998877665    4567899999999999999999999999999877788999999998885 5899855 


Q ss_pred             -eeCC
Q psy7367         204 -IAAG  207 (251)
Q Consensus       204 -l~~G  207 (251)
                       +.+|
T Consensus       295 ~~~~g  299 (308)
T d1e69a_         295 TMVNG  299 (308)
T ss_dssp             EESSS
T ss_pred             EEeCC
Confidence             5555

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=4.2e-11  Score=106.18  Aligned_cols=75  Identities=19%  Similarity=0.186  Sum_probs=63.6

Q ss_pred             CCCcCChhHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEE
Q psy7367         129 LANTLSGGMQRKLSVAMAF----IGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAI  203 (251)
Q Consensus       129 ~~~~LSgG~kqrv~ia~al----~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~  203 (251)
                      +...||||||.++++|..+    ..++++++||||+++||+..+..+.++|.++. .+.-+|++||+...+. .||+++.
T Consensus       329 ~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~-~ad~~~~  407 (427)
T d1w1wa_         329 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFE-KSDALVG  407 (427)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHT-TCSEEEE
T ss_pred             hhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHH-hcccEEE
Confidence            4578899999998877544    56888999999999999999999999998875 4667999999988765 6899875


Q ss_pred             e
Q psy7367         204 I  204 (251)
Q Consensus       204 l  204 (251)
                      +
T Consensus       408 V  408 (427)
T d1w1wa_         408 V  408 (427)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.74  E-value=6.1e-08  Score=79.94  Aligned_cols=48  Identities=19%  Similarity=0.299  Sum_probs=38.0

Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh-hh-CCCeEEEEeCCHHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWELLIK-YK-KGRTVILTTHYMDEAD  195 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~-l~-~g~tiii~tHd~~~~~  195 (251)
                      +.+..++|+||+..|=++.....+...+.+ +. .+..++++||..+...
T Consensus       112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~  161 (224)
T d1ewqa2         112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA  161 (224)
T ss_dssp             CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred             CCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence            355669999999999999888877765544 54 4889999999977654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=3.1e-07  Score=76.04  Aligned_cols=48  Identities=21%  Similarity=0.264  Sum_probs=36.6

Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHH-HHHhh-hC-CCeEEEEeCCHHHHH
Q psy7367         148 IGGSRTVILDEPTSGVDPYSRRSIWE-LLIKY-KK-GRTVILTTHYMDEAD  195 (251)
Q Consensus       148 ~~~p~llllDEPt~gLD~~~~~~l~~-~l~~l-~~-g~tiii~tHd~~~~~  195 (251)
                      +.+..++|+||+..|=++.....+.. .+..+ .+ +..++++||..+...
T Consensus       118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~  168 (234)
T d1wb9a2         118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ  168 (234)
T ss_dssp             CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred             cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHhh
Confidence            44556999999999999999888765 45556 34 678999999865443

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=1.4e-07  Score=73.72  Aligned_cols=44  Identities=25%  Similarity=0.365  Sum_probs=34.5

Q ss_pred             EEEeEEEE-eCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367           2 AIQNLSKR-FPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus         2 ~i~~l~~~-y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      +++.|+.. |    ..+++.++++.+| +++|+|||||||||+|.+|.-+
T Consensus         3 kl~~l~l~Nf----~~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~   47 (222)
T d1qhla_           3 KFRSLTLINW----NGFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA   47 (222)
T ss_dssp             EEEEEEEEEE----TTEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred             eeeEEEEECc----cCEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence            35556553 3    2468888999886 9999999999999999999743

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.81  E-value=4.7e-05  Score=63.04  Aligned_cols=35  Identities=14%  Similarity=0.172  Sum_probs=29.6

Q ss_pred             cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q psy7367          14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLM   48 (251)
Q Consensus        14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~   48 (251)
                      .+-|+++..-+.+|+++.|.|++|+|||||+.-++
T Consensus        22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             chhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            45567666568999999999999999999987776

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=4.8e-06  Score=63.51  Aligned_cols=23  Identities=35%  Similarity=0.572  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +++|+|++|||||||++.|...+
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            78999999999999999998543

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.79  E-value=5.4e-06  Score=64.98  Aligned_cols=26  Identities=23%  Similarity=0.470  Sum_probs=23.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      |.++.|+||+|||||||++.|..-.+
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            88999999999999999999987554

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=0.00018  Score=59.14  Aligned_cols=46  Identities=13%  Similarity=0.144  Sum_probs=32.7

Q ss_pred             HHccCCCEEEEeCCCC-----CCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCH
Q psy7367         146 AFIGGSRTVILDEPTS-----GVDPYSRRSIWELLIKYK-K-GRTVILTTHYM  191 (251)
Q Consensus       146 al~~~p~llllDEPt~-----gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~  191 (251)
                      .-..+|+++++|--++     --|......++..|..+. . +++||++.|--
T Consensus       128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~  180 (274)
T d1nlfa_         128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS  180 (274)
T ss_dssp             HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred             HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhcc
Confidence            3467999999995432     226666677777777764 3 89999999943

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.74  E-value=9.1e-06  Score=66.52  Aligned_cols=60  Identities=13%  Similarity=0.200  Sum_probs=35.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEc---ceeCCCChHHhh-cceEEEccCCCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY---NHDIRTDMTTIR-RSLGVCPQYNAL   85 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~---g~~~~~~~~~~~-~~i~~v~q~~~l   85 (251)
                      +|...+++|+||+|||||+|.|.|-..-..|+|.-.   |+-.+....-+. ..=|++-+.|.+
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg~iiDTPG~  157 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGF  157 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSS
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCcEEEeCCcc
Confidence            589999999999999999999999776667777532   332222111111 122677777754

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=0.00013  Score=56.74  Aligned_cols=48  Identities=13%  Similarity=0.054  Sum_probs=33.5

Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHh
Q psy7367         147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADL  196 (251)
Q Consensus       147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~  196 (251)
                      .+.+-.-+|+|  ..+++...+..++++.++..-...++....+.+.+.+
T Consensus        61 ~l~~g~~vIiD--~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~~e~~~~  108 (172)
T d1yj5a2          61 ALRQGKRVVID--NTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARH  108 (172)
T ss_dssp             HHHTTCCEEEE--SCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHH
T ss_pred             HHHCCCCceee--CcCCCHHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHH
Confidence            33444567788  5568888898888888777555667777667776544

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.70  E-value=1e-05  Score=61.91  Aligned_cols=26  Identities=31%  Similarity=0.463  Sum_probs=24.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .|.++.|.||+||||||+.+.|+..+
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999999765

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=2.5e-06  Score=65.63  Aligned_cols=34  Identities=26%  Similarity=0.224  Sum_probs=28.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcc
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN   62 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g   62 (251)
                      .+.|+||+|+|||||++.++..+....+.+.+.+
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~   36 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY   36 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            5789999999999999999998876666555444

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=1.1e-05  Score=61.70  Aligned_cols=27  Identities=26%  Similarity=0.436  Sum_probs=24.0

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +.+.++.|+||+||||||+.+.|+.-+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999998744

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.65  E-value=1.3e-05  Score=69.74  Aligned_cols=28  Identities=36%  Similarity=0.641  Sum_probs=23.8

Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q psy7367          21 NVNFYEDQITSFLGHNGAGKTTTISMLM   48 (251)
Q Consensus        21 sl~i~~Ge~~~liG~NGaGKSTLlk~l~   48 (251)
                      ++++..+.+.+|+|||||||||+|.+|+
T Consensus        19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          19 KVGFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            4555656699999999999999999984

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.63  E-value=1.3e-05  Score=61.24  Aligned_cols=27  Identities=19%  Similarity=0.112  Sum_probs=23.9

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .+|-++.|+|++||||||+.+.|+--+
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999999998543

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.61  E-value=0.00037  Score=56.01  Aligned_cols=157  Identities=12%  Similarity=0.075  Sum_probs=80.9

Q ss_pred             ceeeeeeE-EEeCCcEEEEEcCCCCcHHHHHHHHhCCC-CCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367          15 LAVNGLNV-NFYEDQITSFLGHNGAGKTTTISMLMGML-PVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE   92 (251)
Q Consensus        15 ~il~~isl-~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~   92 (251)
                      +-|+.+=- -+++|.++.|.||+|||||||+.-++--. +.                   ...+.|+.-      .++..
T Consensus        13 ~~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~-------------------~~~~~~is~------e~~~~   67 (242)
T d1tf7a2          13 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN-------------------KERAILFAY------EESRA   67 (242)
T ss_dssp             HHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-------------------TCCEEEEES------SSCHH
T ss_pred             HHHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHh-------------------ccccceeec------cCCHH
Confidence            34555422 28999999999999999999987665321 11                   112333321      12333


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHH-HHccCCCEEEEeCCC---CCCCHHHH
Q psy7367          93 EHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAM-AFIGGSRTVILDEPT---SGVDPYSR  168 (251)
Q Consensus        93 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~-al~~~p~llllDEPt---~gLD~~~~  168 (251)
                      +.......+ +....+        +...+.....+..+......+.- -.+.. .--.+|++++.|--+   .+.+....
T Consensus        68 ~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~  137 (242)
T d1tf7a2          68 QLLRNAYSW-GMDFEE--------MERQNLLKIVCAYPESAGLEDHL-QIIKSEINDFKPARIAIDSLSALARGVSNNAF  137 (242)
T ss_dssp             HHHHHHHTT-SCCHHH--------HHHTTSEEECCCCGGGSCHHHHH-HHHHHHHHTTCCSEEEEECHHHHTSSSCHHHH
T ss_pred             HHHHHHHHc-CCChHH--------HhhcCceEEEEeecchhhHHHHH-HHHHHHHHhcCCceeeeecchhhhcCCCHHHH
Confidence            333332222 221111        11222222222222222222221 11222 224579999999743   34455555


Q ss_pred             HHHHHHHHhh-h-CCCeEEEEeCCH----------HHHHhhcCEEEEeeC
Q psy7367         169 RSIWELLIKY-K-KGRTVILTTHYM----------DEADLLGDRIAIIAA  206 (251)
Q Consensus       169 ~~l~~~l~~l-~-~g~tiii~tHd~----------~~~~~~~d~i~~l~~  206 (251)
                      ......+..+ + .+.+++++.|--          ..+..+||-++.++.
T Consensus       138 ~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~  187 (242)
T d1tf7a2         138 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY  187 (242)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEEE
Confidence            5555555444 3 489999988742          234567899988853

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.55  E-value=8.5e-06  Score=62.73  Aligned_cols=26  Identities=19%  Similarity=0.230  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCCCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGMLPV   53 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~~p   53 (251)
                      .+++|+|++|||||||++-|...++.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~   27 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVR   27 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            37899999999999999988776543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.52  E-value=9.1e-06  Score=66.77  Aligned_cols=35  Identities=23%  Similarity=0.427  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEE
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI   60 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~   60 (251)
                      +|...+++|+||+|||||+|.|.|-..-..|+|.-
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~  130 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE  130 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhccccc
Confidence            57899999999999999999999977666777763

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.50  E-value=2.8e-05  Score=59.38  Aligned_cols=27  Identities=26%  Similarity=0.305  Sum_probs=23.9

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ++|-.+.|+||+||||||+.+.|+--+
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            467789999999999999999998654

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=3.2e-05  Score=62.15  Aligned_cols=26  Identities=23%  Similarity=0.344  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .|.++.|+||+|||||||++.|.--.
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence            48899999999999999999887543

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.45  E-value=3.7e-05  Score=58.51  Aligned_cols=26  Identities=27%  Similarity=0.484  Sum_probs=23.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      ..++.|.|++||||||+.+.|+..+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999998764

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.45  E-value=2.8e-05  Score=59.41  Aligned_cols=24  Identities=21%  Similarity=0.481  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ..++|+||.|||||||.+.|+-.+
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999999755

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.43  E-value=3.3e-05  Score=60.03  Aligned_cols=23  Identities=30%  Similarity=0.328  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ++||.||+|||||||.+.|.-.+
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l   46 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTL   46 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            79999999999999999998544

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=3.6e-05  Score=57.53  Aligned_cols=23  Identities=35%  Similarity=0.330  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .+.|+||+||||||+.|.|+-.+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            47888999999999999998654

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.40  E-value=4.3e-05  Score=58.53  Aligned_cols=27  Identities=26%  Similarity=0.394  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhCCCCC
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMGMLPV   53 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~Gl~~p   53 (251)
                      +.+++|.|+.||||||+.+.|+-.+..
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~   27 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRK   27 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            368999999999999999999765433

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.39  E-value=4.2e-05  Score=57.23  Aligned_cols=31  Identities=26%  Similarity=0.356  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEc
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY   61 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~   61 (251)
                      .++.|.||+|||||||.+.|..   ...|.+.+.
T Consensus         3 klIii~G~pGsGKTTla~~L~~---~~~~~~~~~   33 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA---KNPGFYNIN   33 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH---HSTTEEEEC
T ss_pred             EEEEEECCCCCCHHHHHHHHHH---hCCCCEEec
Confidence            4788999999999999997753   122455554

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=3.2e-05  Score=60.10  Aligned_cols=26  Identities=35%  Similarity=0.327  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +|-++.|+|++||||||+.+.|+-.+
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999998543

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.33  E-value=5.4e-05  Score=57.18  Aligned_cols=24  Identities=33%  Similarity=0.454  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .++.|.||.||||||+.+.|+..+
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            478999999999999999999755

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.32  E-value=3.2e-05  Score=60.78  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .++|+|+.|||||||++.|+|.-
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCCCHHHHHHHhcCCC
Confidence            49999999999999999999853

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.30  E-value=5.4e-05  Score=57.41  Aligned_cols=21  Identities=33%  Similarity=0.311  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q psy7367          30 TSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      +.|+||.||||||+.+.|+--
T Consensus         7 I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            679999999999999999753

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.25  E-value=0.00061  Score=54.78  Aligned_cols=97  Identities=19%  Similarity=0.181  Sum_probs=51.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP  105 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~  105 (251)
                      .-.++.++||+|+||||.+==|+-.++                  ...++|+++.-+..=   .-..|.+..        
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~~------------------~~g~kV~lit~Dt~R---~ga~eQL~~--------   61 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFYK------------------KKGFKVGLVGADVYR---PAALEQLQQ--------   61 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHHH------------------HTTCCEEEEECCCSS---HHHHHHHHH--------
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH------------------HCCCceEEEEeeccc---cchhHHHHH--------
Confidence            457899999999999998655553221                  112457877655321   123344433        


Q ss_pred             hHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q psy7367         106 KDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDP  165 (251)
Q Consensus       106 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~  165 (251)
                                +.+.+++.-..-....++..=.++  ++..+...+-+++|.|  |+|..+
T Consensus        62 ----------~a~~l~v~~~~~~~~~~~~~~~~~--a~~~~~~~~~d~IlID--TaGr~~  107 (211)
T d1j8yf2          62 ----------LGQQIGVPVYGEPGEKDVVGIAKR--GVEKFLSEKMEIIIVD--TAGRHG  107 (211)
T ss_dssp             ----------HHHHHTCCEECCTTCCCHHHHHHH--HHHHHHHTTCSEEEEE--CCCSCC
T ss_pred             ----------hccccCcceeecccchhhhHHHHH--HHHHhhccCCceEEEe--cCCcCc
Confidence                      344445543332333333222222  5555667788999999  777643

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.25  E-value=0.00013  Score=56.37  Aligned_cols=23  Identities=17%  Similarity=0.351  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.|+|||||++.|+|-.
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~~   32 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNKE   32 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTST
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            47999999999999999999843

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.24  E-value=7.2e-05  Score=60.15  Aligned_cols=21  Identities=38%  Similarity=0.545  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~G   49 (251)
                      +++|+||.|||||||++.|..
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            689999999999999999974

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.21  E-value=3.2e-05  Score=62.93  Aligned_cols=43  Identities=21%  Similarity=0.329  Sum_probs=34.0

Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHH
Q psy7367         149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMD  192 (251)
Q Consensus       149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~  192 (251)
                      .+.+++++||.-. |.......+.+.+.+......+|++|++.+
T Consensus       130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~  172 (252)
T d1sxje2         130 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS  172 (252)
T ss_dssp             -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred             CCceEEEeccccc-cccccchhhhcccccccccccceeeecccc
Confidence            3566999999865 888888888888877666777899999875

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=8.9e-05  Score=59.00  Aligned_cols=23  Identities=17%  Similarity=0.429  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ++||.|+.|||||||.+.|+-.+
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999997654

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=8.5e-05  Score=58.26  Aligned_cols=22  Identities=27%  Similarity=0.440  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCC
Q psy7367          30 TSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +.|+||+|||||||++.|+--.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6899999999999999987543

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.13  E-value=0.00012  Score=56.04  Aligned_cols=23  Identities=22%  Similarity=0.304  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .++|+|+.|||||||++.|+|-.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999843

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.12  E-value=0.0001  Score=56.86  Aligned_cols=22  Identities=36%  Similarity=0.499  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++|+|+.|+|||||++.|.|-
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999985

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=0.00011  Score=57.82  Aligned_cols=21  Identities=33%  Similarity=0.491  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q psy7367          30 TSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      ++|+||+|||||||++.|+-.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            679999999999999998653

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.09  E-value=7.2e-05  Score=58.06  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q psy7367          30 TSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      +||+|+.++|||||++.|+|-
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999864

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00014  Score=55.79  Aligned_cols=22  Identities=27%  Similarity=0.581  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      +++|+|..|+|||||++.|+|-
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999984

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00018  Score=55.77  Aligned_cols=27  Identities=26%  Similarity=0.279  Sum_probs=24.4

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      -+++|+++.|.||+|||||||+--++.
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            489999999999999999999887764

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00015  Score=56.62  Aligned_cols=22  Identities=23%  Similarity=0.457  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~G   49 (251)
                      ..+.|+||+|||||||++.|..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999998874

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.05  E-value=0.00011  Score=56.23  Aligned_cols=23  Identities=43%  Similarity=0.496  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|++|||||||++.+.+-.
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998854

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.05  E-value=0.00016  Score=56.57  Aligned_cols=25  Identities=24%  Similarity=0.361  Sum_probs=21.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      +..++.|+||.||||||+.+.|+--
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999999853

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.0021  Score=53.23  Aligned_cols=42  Identities=19%  Similarity=0.170  Sum_probs=30.8

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhCC-CCCCeeEEEEccee
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMGM-LPVSSGTAKIYNHD   64 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl-~~p~~G~i~~~g~~   64 (251)
                      -|++|.++-|.||+|||||||+-.++-. .++..--++++.+.
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~   92 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH   92 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence            6889999999999999999997655543 34433345666554

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.03  E-value=0.00015  Score=55.35  Aligned_cols=22  Identities=36%  Similarity=0.519  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCC
Q psy7367          30 TSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +.|+|+.||||||+.|.|+-.+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6788999999999999998754

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.02  E-value=0.00017  Score=55.55  Aligned_cols=22  Identities=27%  Similarity=0.617  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      +++|+|+.|+|||||++.|+|-
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999985

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.00  E-value=0.00014  Score=54.09  Aligned_cols=22  Identities=45%  Similarity=0.540  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++|+|++|+|||||++.+.+-
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4679999999999999999984

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.98  E-value=0.00018  Score=55.08  Aligned_cols=24  Identities=29%  Similarity=0.443  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      ++.|.|++||||||+.+.|+..+.
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            678899999999999999987653

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.96  E-value=0.00014  Score=56.25  Aligned_cols=22  Identities=18%  Similarity=0.362  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCC
Q psy7367          30 TSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +||+|+.++|||||++.|+|-.
T Consensus         4 VaivG~~nvGKSTLin~L~~~~   25 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAH   25 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7999999999999999999853

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.94  E-value=0.0002  Score=54.95  Aligned_cols=22  Identities=27%  Similarity=0.240  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      .+.|+|++||||||+-+.|+--
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~   25 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARA   25 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            3568999999999999999853

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.93  E-value=0.00017  Score=56.58  Aligned_cols=28  Identities=21%  Similarity=0.341  Sum_probs=24.3

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          24 FYEDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ++++.++.|+||.||||||+.+.|+--+
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4567899999999999999999998643

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.93  E-value=0.00022  Score=55.85  Aligned_cols=26  Identities=31%  Similarity=0.341  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +-.++.|+||.||||||+.+.|+--+
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            44589999999999999999998755

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.92  E-value=0.001  Score=55.33  Aligned_cols=41  Identities=24%  Similarity=0.278  Sum_probs=29.9

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCee-EEEEcce
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG-TAKIYNH   63 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G-~i~~~g~   63 (251)
                      -|+.|.++-|.||+|||||||.-.++....-..| -++++.+
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE   94 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE   94 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence            5789999999999999999998777764332223 3444443

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.90  E-value=0.00019  Score=53.82  Aligned_cols=35  Identities=17%  Similarity=0.161  Sum_probs=24.9

Q ss_pred             HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q psy7367         141 LSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK  177 (251)
Q Consensus       141 v~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~  177 (251)
                      -.++..++.+..+-++  |+|+.+-.+..++++.|.+
T Consensus       129 ~~~~~~~~~~~~~~~~--~~SA~~g~gv~e~~~~l~~  163 (169)
T d1upta_         129 NSLGLPALKDRKWQIF--KTSATKGTGLDEAMEWLVE  163 (169)
T ss_dssp             HHHTGGGCTTSCEEEE--ECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEE--EEeCCCCCCHHHHHHHHHH
Confidence            3445556666666566  8999999988888877754

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.89  E-value=0.0002  Score=53.39  Aligned_cols=21  Identities=33%  Similarity=0.301  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q psy7367          30 TSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      +.|+|+.|||||||++.+++-
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            679999999999999999864

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.89  E-value=0.00021  Score=56.06  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      .++|+|+.|||||||++.|.|-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999874

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.86  E-value=0.00025  Score=55.23  Aligned_cols=21  Identities=33%  Similarity=0.569  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++||.|+.||||||+.+.|.-
T Consensus         5 IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999999874

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.85  E-value=0.00024  Score=57.06  Aligned_cols=24  Identities=42%  Similarity=0.574  Sum_probs=20.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++.+++++||+|+||||.+-=|+-
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~   28 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGR   28 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            568999999999999998655553

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00031  Score=52.77  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.|+|||||++.|+|.-
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999853

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.84  E-value=0.00027  Score=53.87  Aligned_cols=22  Identities=32%  Similarity=0.413  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCC
Q psy7367          30 TSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +.|+|+.||||||+-+.|+--+
T Consensus         4 IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5678999999999999998654

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.82  E-value=0.00023  Score=61.03  Aligned_cols=34  Identities=29%  Similarity=0.426  Sum_probs=27.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEE
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI   60 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~   60 (251)
                      +.-+.|.||.||||||||++|++..+|..=-|.+
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i~~~~rivti  199 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI  199 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred             CCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence            3448999999999999999999999876544444

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00031  Score=54.68  Aligned_cols=22  Identities=32%  Similarity=0.446  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      ++.|+||.||||||..+.|+--
T Consensus         3 iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999853

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.78  E-value=0.0003  Score=54.76  Aligned_cols=22  Identities=18%  Similarity=0.212  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      .+.|+||.||||||+.+.|+--
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4679999999999999999753

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.78  E-value=0.00016  Score=55.33  Aligned_cols=23  Identities=26%  Similarity=0.469  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|+.++|||||+|.|.|-.
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999998853

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.77  E-value=0.0022  Score=51.69  Aligned_cols=43  Identities=14%  Similarity=0.102  Sum_probs=34.8

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHH
Q psy7367         151 SRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEA  194 (251)
Q Consensus       151 p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~  194 (251)
                      .+++|+||.-. |...++..++..+.+...+..+|++|++..-+
T Consensus       116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i  158 (239)
T d1njfa_         116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL  158 (239)
T ss_dssp             SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred             CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCcccc
Confidence            45999999864 88888888888887766678899999887544

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.76  E-value=0.00042  Score=53.84  Aligned_cols=24  Identities=33%  Similarity=0.365  Sum_probs=21.6

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHh
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLM   48 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~   48 (251)
                      ++|--+.|+||.||||||..+.|+
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La   24 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLA   24 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHH
Confidence            467778899999999999999999

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.74  E-value=0.00039  Score=54.33  Aligned_cols=23  Identities=26%  Similarity=0.309  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ++.++|..|||||||.+.|+..+
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l   26 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYL   26 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998543

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.72  E-value=0.0005  Score=51.93  Aligned_cols=22  Identities=36%  Similarity=0.425  Sum_probs=20.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCC
Q psy7367          30 TSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ++|+|+.|||||||++.+.+-.
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEECCCCCCHHHHHHHHcCCC
Confidence            7899999999999999999854

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.00041  Score=54.69  Aligned_cols=30  Identities=27%  Similarity=0.353  Sum_probs=24.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC---CCCCCeeEE
Q psy7367          29 ITSFLGHNGAGKTTTISMLMG---MLPVSSGTA   58 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~G---l~~p~~G~i   58 (251)
                      +++|.||.||||||+.+.|+-   +..-+.|.+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL   37 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI   37 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence            899999999999999999985   434455655

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.69  E-value=0.00041  Score=53.20  Aligned_cols=21  Identities=29%  Similarity=0.457  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q psy7367          30 TSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      +.|+||.||||||+.+.|+--
T Consensus         3 I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            679999999999999999653

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.67  E-value=0.00048  Score=55.06  Aligned_cols=41  Identities=17%  Similarity=0.121  Sum_probs=30.1

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CeeEEEEcceeC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGMLPV--SSGTAKIYNHDI   65 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p--~~G~i~~~g~~~   65 (251)
                      ++|-++-|.|.+||||||+.+.|.--+..  ..-.+.++|..+
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i   64 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI   64 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHH
Confidence            57889999999999999999999743311  112466777554

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.66  E-value=0.00044  Score=54.79  Aligned_cols=21  Identities=33%  Similarity=0.537  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++||+|+.||||||+.+++.-
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999999964

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.66  E-value=0.00032  Score=54.69  Aligned_cols=25  Identities=24%  Similarity=0.226  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .-+++|-|+.||||||+++.|...+
T Consensus         9 p~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           9 PFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3489999999999999999998755

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.66  E-value=0.00031  Score=56.69  Aligned_cols=25  Identities=32%  Similarity=0.381  Sum_probs=19.7

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      .+-.+++++||+|+||||.+-=|+-
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa   33 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAK   33 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999998655553

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.65  E-value=0.00047  Score=54.61  Aligned_cols=23  Identities=17%  Similarity=0.261  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +++|-||.||||||..+.|+--+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57888999999999999998643

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.65  E-value=0.00038  Score=56.60  Aligned_cols=27  Identities=22%  Similarity=0.228  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      ....+.|.||.|||||||.+.|++-+.
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            344688999999999999999999664

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.60  E-value=0.00051  Score=52.20  Aligned_cols=23  Identities=26%  Similarity=0.216  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|..|||||||++.|.+-.
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~~   39 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMNE   39 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999853

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.60  E-value=0.00048  Score=56.78  Aligned_cols=23  Identities=26%  Similarity=0.573  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -++|+|..|+|||||+|.|.|-.
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            48899999999999999999954

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.58  E-value=0.031  Score=45.80  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=20.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      ..+++|.|.-|.|||||.+.+..
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998753

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.00062  Score=53.83  Aligned_cols=26  Identities=31%  Similarity=0.442  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +|.+++|-|+-||||||+++.|+-.+
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999999998643

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.57  E-value=0.00055  Score=52.92  Aligned_cols=22  Identities=32%  Similarity=0.433  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCC
Q psy7367          30 TSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +||+|+-.||||||++.|+|.-
T Consensus         8 IaiiG~~naGKSTL~n~L~~~~   29 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEIA   29 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEeCCCCcHHHHHHHHHHhc
Confidence            8999999999999999999753

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.57  E-value=0.0006  Score=52.59  Aligned_cols=23  Identities=26%  Similarity=0.358  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .+.|+||.||||||+.+.|+--+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            46799999999999999998643

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.00039  Score=55.98  Aligned_cols=23  Identities=43%  Similarity=0.554  Sum_probs=18.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      -.+++++||+|+||||.+-=|+-
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~   31 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLAR   31 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999998655554

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.00041  Score=58.99  Aligned_cols=24  Identities=38%  Similarity=0.526  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      ++||-|++||||||+.+.|.-++.
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHHh
Confidence            899999999999999999987663

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.00066  Score=54.14  Aligned_cols=27  Identities=26%  Similarity=0.318  Sum_probs=23.7

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ++|-+++|-|+-||||||+.+.|.--+
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L   27 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEAL   27 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999987654

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.52  E-value=0.00078  Score=53.45  Aligned_cols=27  Identities=22%  Similarity=0.252  Sum_probs=24.2

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      -+++|+++-|.||.|||||||.--++-
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            389999999999999999999877653

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.51  E-value=0.00015  Score=54.60  Aligned_cols=21  Identities=24%  Similarity=0.441  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q psy7367          30 TSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      ++|+|+.|+|||||++.|+|-
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999884

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.50  E-value=0.00053  Score=53.92  Aligned_cols=22  Identities=27%  Similarity=0.308  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++|+|+.|||||||++.+.+-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999874

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.46  E-value=0.00071  Score=52.05  Aligned_cols=22  Identities=36%  Similarity=0.368  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      .+.|+||.||||||+.+.|+--
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3689999999999999999753

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.46  E-value=0.00074  Score=53.60  Aligned_cols=22  Identities=27%  Similarity=0.505  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      ++||+|+.||||||..+++.-+
T Consensus         5 iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHC
Confidence            7899999999999999998743

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.00076  Score=51.78  Aligned_cols=21  Identities=33%  Similarity=0.377  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~G   49 (251)
                      .+.|+||.||||||..+.|+-
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999999984

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.00048  Score=55.12  Aligned_cols=27  Identities=26%  Similarity=0.300  Sum_probs=24.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      ++.+++|-|+-||||||+++.|+..+.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            367899999999999999999998764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.44  E-value=0.00062  Score=51.53  Aligned_cols=20  Identities=25%  Similarity=0.454  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q psy7367          30 TSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++++|+.|+|||||++.+.+
T Consensus         5 i~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            67999999999999998865

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.42  E-value=0.00076  Score=53.93  Aligned_cols=54  Identities=17%  Similarity=0.342  Sum_probs=33.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHH-HhhcCEEEEe
Q psy7367         150 GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEA-DLLGDRIAII  204 (251)
Q Consensus       150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~-~~~~d~i~~l  204 (251)
                      ++.++++||- ..+-...+..++..+........+|++|+....+ ..+.+|...+
T Consensus       109 ~~~iilide~-d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~sR~~~i  163 (231)
T d1iqpa2         109 SFKIIFLDEA-DALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIF  163 (231)
T ss_dssp             SCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEE
T ss_pred             CceEEeehhh-hhcchhHHHHHhhhcccCCcceEEEeccCChhhchHhHhCccccc
Confidence            6779999994 3445556666666666655556677777766433 3344554433

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.00079  Score=57.63  Aligned_cols=27  Identities=26%  Similarity=0.260  Sum_probs=23.0

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .+.-++||+||.|||||||+..|...+
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            346789999999999999999998543

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.38  E-value=0.00087  Score=54.06  Aligned_cols=25  Identities=28%  Similarity=0.401  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      ..+.|.||+|+||||+.++++....
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999997543

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.37  E-value=0.00098  Score=53.23  Aligned_cols=32  Identities=22%  Similarity=0.262  Sum_probs=26.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEE
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA   58 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i   58 (251)
                      +|.+++|-|+-||||||+.+.|+-.+.. .|.+
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~~   33 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL   33 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEEE
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHh-CCEE
Confidence            6899999999999999999999876654 4443

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.32  E-value=0.00091  Score=53.31  Aligned_cols=21  Identities=43%  Similarity=0.539  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q psy7367          30 TSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      +.|.||+|+||||+.++++.-
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            789999999999999999863

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.30  E-value=0.0013  Score=51.78  Aligned_cols=33  Identities=18%  Similarity=0.176  Sum_probs=25.4

Q ss_pred             ceeeeeeE-EEeCCcEEEEEcCCCCcHHHHHHHH
Q psy7367          15 LAVNGLNV-NFYEDQITSFLGHNGAGKTTTISML   47 (251)
Q Consensus        15 ~il~~isl-~i~~Ge~~~liG~NGaGKSTLlk~l   47 (251)
                      +-|+++-- -+++|+++.|.|++|+|||||.--+
T Consensus        13 ~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          13 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred             HHHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHH
Confidence            34444322 4899999999999999999997543

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.29  E-value=0.001  Score=51.24  Aligned_cols=22  Identities=32%  Similarity=0.357  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      .+.|+||-||||||+.+.|+--
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3668999999999999999864

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.29  E-value=0.0011  Score=53.07  Aligned_cols=25  Identities=32%  Similarity=0.420  Sum_probs=20.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      ...++.++||||+||||.+-=|+-.
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~   33 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALY   33 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3568999999999999987766643

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.29  E-value=0.00092  Score=50.89  Aligned_cols=22  Identities=36%  Similarity=0.421  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++++|+.|+|||||++.+.+-
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999774

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.28  E-value=0.0011  Score=53.27  Aligned_cols=24  Identities=29%  Similarity=0.422  Sum_probs=21.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      .+.++.|.||.|+|||||++.++-
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHH
Confidence            567899999999999999998753

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.26  E-value=0.00092  Score=50.91  Aligned_cols=20  Identities=30%  Similarity=0.549  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q psy7367          30 TSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++|+|+.|+|||||++.+.+
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999999875

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.25  E-value=0.0014  Score=51.84  Aligned_cols=26  Identities=27%  Similarity=0.362  Sum_probs=23.6

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          24 FYEDQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        24 i~~Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      +++|+++.|.|+.|+|||||.--++-
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            89999999999999999999777754

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.23  E-value=0.0011  Score=51.74  Aligned_cols=22  Identities=27%  Similarity=0.386  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      .+.|+||.||||||+.+.|+--
T Consensus         8 rIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5779999999999999999964

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.23  E-value=0.0014  Score=50.23  Aligned_cols=29  Identities=24%  Similarity=0.243  Sum_probs=25.7

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ..++|.++.|-|+=|||||||.|.++.-+
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             cCCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence            45789999999999999999999988654

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.23  E-value=0.0014  Score=52.35  Aligned_cols=24  Identities=33%  Similarity=0.455  Sum_probs=22.0

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHH
Q psy7367          24 FYEDQITSFLGHNGAGKTTTISML   47 (251)
Q Consensus        24 i~~Ge~~~liG~NGaGKSTLlk~l   47 (251)
                      +++|+++.|.||.|||||||.--+
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~   56 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTL   56 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHH
Confidence            899999999999999999997644

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0021  Score=48.62  Aligned_cols=20  Identities=20%  Similarity=0.491  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q psy7367          30 TSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++|+|..|+|||||++.+.+
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            68999999999999998776

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.19  E-value=0.001  Score=50.53  Aligned_cols=20  Identities=20%  Similarity=0.328  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q psy7367          30 TSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++++|+.|+|||||++.+.+
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999998764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0013  Score=52.40  Aligned_cols=27  Identities=26%  Similarity=0.172  Sum_probs=24.2

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      -|++|.++.|.||+|||||||.-.++.
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999999877763

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.16  E-value=0.00061  Score=57.30  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ++||.|++||||||+.+.|.-++
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~   28 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIF   28 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Confidence            89999999999999999988754

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0014  Score=49.64  Aligned_cols=21  Identities=24%  Similarity=0.366  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q psy7367          30 TSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      ++++|+.|+|||||++.+.+-
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999988763

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.15  E-value=0.0013  Score=57.58  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=20.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCC
Q psy7367          30 TSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ++|+|..|+|||||+|.|.|..
T Consensus        59 Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          59 VAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             EEEEECTTSSHHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8999999999999999999954

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.13  E-value=0.0012  Score=53.05  Aligned_cols=22  Identities=45%  Similarity=0.634  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      +++|+|+..||||||++.|.+-
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhh
Confidence            6999999999999999999873

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0012  Score=50.55  Aligned_cols=20  Identities=25%  Similarity=0.544  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q psy7367          30 TSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++++|+.|+|||||++.+.+
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998765

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.09  E-value=0.0014  Score=52.46  Aligned_cols=28  Identities=25%  Similarity=0.281  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCCCee
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGMLPVSSG   56 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~~p~~G   56 (251)
                      .+-+.||.|+||||+.++|+.-+....+
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~   64 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQTNIH   64 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred             eEEEECCCCCcHHHHHHHHHhccCCCcc
Confidence            3779999999999999999976654433

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.03  E-value=0.0018  Score=50.61  Aligned_cols=23  Identities=35%  Similarity=0.588  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +++|-|.-||||||+++.|...+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68899999999999999998644

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0018  Score=49.77  Aligned_cols=21  Identities=33%  Similarity=0.351  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q psy7367          30 TSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      ++|+|+.|+|||||++.+.+-
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            789999999999999998864

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.96  E-value=0.0021  Score=48.47  Aligned_cols=20  Identities=20%  Similarity=0.365  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q psy7367          30 TSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++++|+.|+|||||++-+.+
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987664

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.93  E-value=0.0012  Score=50.74  Aligned_cols=22  Identities=41%  Similarity=0.368  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++++|+.|||||||++.+.+-
T Consensus        19 KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4779999999999999998653

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.93  E-value=0.0016  Score=54.11  Aligned_cols=70  Identities=19%  Similarity=0.160  Sum_probs=40.4

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeE-EEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHH
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT-AKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEH   94 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~   94 (251)
                      -++.|.++-|.||+|+|||||+-.++....-..|. |+++.+.--.  .++.+++|.=+.+-.++...+++|.
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~--~e~a~~~GvD~d~il~~~~~~~E~~  126 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALD--PDYAKKLGVDTDSLLVSQPDTGEQA  126 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCC--HHHHHHHTCCGGGCEEECCSSHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCC--HHHHHHhCCCHHHeEEecCCCHHHH
Confidence            68899999999999999999964444333223344 5666654221  2223344543333223333455443

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.92  E-value=0.0021  Score=48.49  Aligned_cols=21  Identities=19%  Similarity=0.415  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q psy7367          30 TSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      ++++|++|+|||||++.+.+-
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999987653

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0021  Score=48.69  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCC
Q psy7367          30 TSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ++|+|+.|+|||||++.+.+..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEECCCCcCHHHHHHHHhCCc
Confidence            6899999999999999998864

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0016  Score=49.18  Aligned_cols=21  Identities=19%  Similarity=0.311  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~G   49 (251)
                      -++|+|+.|+|||||++.+.+
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0017  Score=49.44  Aligned_cols=21  Identities=19%  Similarity=0.376  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q psy7367          30 TSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      ++++|+.|+|||||++.+.+-
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            679999999999999987653

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0017  Score=49.34  Aligned_cols=21  Identities=19%  Similarity=0.322  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~G   49 (251)
                      -++|+|..|+|||||++.+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            388999999999999997654

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=95.88  E-value=0.0017  Score=52.03  Aligned_cols=23  Identities=30%  Similarity=0.367  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -+-+.||.|+||||+.+++++.+
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~   59 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHEL   59 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            36689999999999999999743

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.003  Score=48.09  Aligned_cols=22  Identities=27%  Similarity=0.620  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCC
Q psy7367          30 TSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +.++|..|+|||||++.+.+..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCc
Confidence            6899999999999999998754

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.84  E-value=0.0022  Score=54.57  Aligned_cols=25  Identities=32%  Similarity=0.403  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      +.-++||.||-|||||||+..|...
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHH
Confidence            4567999999999999999998854

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.80  E-value=0.0022  Score=54.08  Aligned_cols=24  Identities=25%  Similarity=0.360  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .-+.+.||.|+|||+|.|+|+...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhcc
Confidence            455689999999999999999864

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.78  E-value=0.0021  Score=49.43  Aligned_cols=20  Identities=30%  Similarity=0.579  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q psy7367          30 TSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++|+|..|+|||||++.+.+
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999997774

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0024  Score=48.48  Aligned_cols=20  Identities=25%  Similarity=0.493  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q psy7367          30 TSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++|+|+.|+|||||++.+.+
T Consensus         8 i~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.75  E-value=0.0019  Score=49.10  Aligned_cols=24  Identities=33%  Similarity=0.245  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      -+.++|++|+|||||++.+.+-..
T Consensus        14 kIvlvG~~~vGKTSli~rl~~~~~   37 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKLGQS   37 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            367999999999999999986443

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0022  Score=48.41  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++|+|+.|+|||||++-+.+-
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988753

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.003  Score=51.95  Aligned_cols=28  Identities=21%  Similarity=0.159  Sum_probs=22.5

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          24 FYEDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ++...-+.|.||.|+|||+|.+.|+..+
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          42 GKIPKGVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCeEEeeCCCCCCccHHHHHHHHHc
Confidence            3344557899999999999999999754

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.005  Score=47.23  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -++++|+.|+|||||++.+.+-
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999977653

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.74  E-value=0.0027  Score=53.22  Aligned_cols=22  Identities=27%  Similarity=0.381  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      ++||-|+.|||||||.+.|.-.
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~   50 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNH   50 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            8999999999999999877543

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.74  E-value=0.0055  Score=47.62  Aligned_cols=33  Identities=18%  Similarity=0.255  Sum_probs=26.5

Q ss_pred             ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q psy7367          15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLM   48 (251)
Q Consensus        15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~   48 (251)
                      ..++...+.+ .|.-+.|.|++|+|||||.-.+.
T Consensus         4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2           4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            3466666666 78899999999999999987765

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.72  E-value=0.0026  Score=50.54  Aligned_cols=44  Identities=14%  Similarity=0.255  Sum_probs=31.7

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHH
Q psy7367         150 GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEA  194 (251)
Q Consensus       150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~  194 (251)
                      +.+++++||.- .+....+..+...+.+......+++++++.+.+
T Consensus       101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i  144 (224)
T d1sxjb2         101 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNKI  144 (224)
T ss_dssp             CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred             ceEEEEEeccc-ccchhHHHHHhhhccccccceeeeeccCchhhh
Confidence            36799999964 566667777777776666677788888887554

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.0034  Score=47.67  Aligned_cols=20  Identities=25%  Similarity=0.534  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q psy7367          30 TSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++|+|+.|+|||||++.+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999977654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.70  E-value=0.0028  Score=47.83  Aligned_cols=20  Identities=25%  Similarity=0.547  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q psy7367          30 TSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++|+|..|+|||||++-+..
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998874

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0029  Score=47.51  Aligned_cols=20  Identities=40%  Similarity=0.592  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q psy7367          30 TSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++|+|..|+|||||++.+.+
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999875

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0023  Score=48.87  Aligned_cols=22  Identities=18%  Similarity=0.175  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -+.|+|++|+|||||++.+.+-
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3679999999999999887753

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.65  E-value=0.003  Score=47.34  Aligned_cols=20  Identities=20%  Similarity=0.282  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q psy7367          30 TSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++++|+.|+|||||++.+.+
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998864

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0033  Score=47.36  Aligned_cols=20  Identities=20%  Similarity=0.390  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q psy7367          30 TSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++|+|+.|+|||||++.+.+
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999988765

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.61  E-value=0.0036  Score=50.13  Aligned_cols=26  Identities=31%  Similarity=0.469  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCCCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGMLPV   53 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~~p   53 (251)
                      ..+.|.||.|+||||+++.++-.++.
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~~   69 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYKD   69 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHhc
Confidence            47889999999999999999976653

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.0027  Score=48.44  Aligned_cols=20  Identities=20%  Similarity=0.463  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q psy7367          30 TSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++++|..|+|||||++.+.+
T Consensus        10 i~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998876

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.0029  Score=47.77  Aligned_cols=20  Identities=25%  Similarity=0.345  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q psy7367          30 TSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~G   49 (251)
                      +.|+|..|+|||||++.+.+
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.54  E-value=0.0026  Score=49.39  Aligned_cols=20  Identities=20%  Similarity=0.434  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q psy7367          30 TSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++|+|+.|+|||||++.+.+
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            78999999999999998774

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0065  Score=45.86  Aligned_cols=20  Identities=20%  Similarity=0.519  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q psy7367          30 TSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++|+|+.|+|||||++-+.+
T Consensus         5 i~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            68999999999999998875

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.48  E-value=0.0035  Score=49.65  Aligned_cols=43  Identities=19%  Similarity=0.433  Sum_probs=33.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHH
Q psy7367         150 GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDE  193 (251)
Q Consensus       150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~  193 (251)
                      +.+++++||- ..+....+..++..|.+......++++|++...
T Consensus        99 ~~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~  141 (227)
T d1sxjc2          99 GFKLIILDEA-DAMTNAAQNALRRVIERYTKNTRFCVLANYAHK  141 (227)
T ss_dssp             SCEEEEETTG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred             CeEEEEEecc-ccchhhHHHHHHHHhhhcccceeeccccCcHHH
Confidence            3469999996 467888888888888877667777888877543

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.46  E-value=0.004  Score=49.80  Aligned_cols=21  Identities=29%  Similarity=0.452  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++||.|+-||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999954

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.45  E-value=0.0036  Score=51.00  Aligned_cols=22  Identities=18%  Similarity=0.145  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      -+.|.||.|||||++.+.|+..
T Consensus        42 ~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhhc
Confidence            4779999999999999999863

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.42  E-value=0.0027  Score=55.61  Aligned_cols=46  Identities=15%  Similarity=0.066  Sum_probs=31.1

Q ss_pred             HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHH
Q psy7367         141 LSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMD  192 (251)
Q Consensus       141 v~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~  192 (251)
                      -++..+|=++|++++..|..   |+.+....+   .....|..|+-+-|--+
T Consensus       218 ~~l~~~lR~dPDvi~igEiR---d~~ta~~a~---~aa~tGhlV~tTlHa~~  263 (401)
T d1p9ra_         218 RGLRAILRQDPDVVMVGEIR---DLETAQIAV---QASLTGHLVMSTLHTNT  263 (401)
T ss_dssp             HHHHHHGGGCCSEEEESCCC---SHHHHHHHH---HHHHTTCEEEEEECCSS
T ss_pred             HHHHHHHhhcCCEEEecCcC---ChHHHHHHH---HHHhcCCeEEEEeccCc
Confidence            44667788899999999985   444443333   22235888888888643

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.0024  Score=48.61  Aligned_cols=20  Identities=30%  Similarity=0.501  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q psy7367          30 TSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++++|+.|+|||||++.+++
T Consensus         6 i~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC-
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987765

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.41  E-value=0.0034  Score=52.54  Aligned_cols=31  Identities=16%  Similarity=0.096  Sum_probs=27.3

Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          21 NVNFYEDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        21 sl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      =+.|-+|+-.+|+|+.|+|||||+..|+.-.
T Consensus        37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             HSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            3578899999999999999999999998643

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0032  Score=47.76  Aligned_cols=20  Identities=20%  Similarity=0.469  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q psy7367          30 TSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++++|..|+|||||++.+.+
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.40  E-value=0.0034  Score=47.42  Aligned_cols=21  Identities=19%  Similarity=0.389  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~G   49 (251)
                      -++++|+.|+|||||++-+.+
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            368999999999999997664

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.004  Score=47.32  Aligned_cols=21  Identities=19%  Similarity=0.327  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~G   49 (251)
                      -++|+|..|+|||||++-+.+
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998764

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.0037  Score=51.98  Aligned_cols=37  Identities=16%  Similarity=0.237  Sum_probs=28.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCCC----------CCeeEEEEcceeC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGMLP----------VSSGTAKIYNHDI   65 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~~----------p~~G~i~~~g~~~   65 (251)
                      -+++|+||-++||||||+.|.|...          -|.| |++...++
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~G-iw~~~~~~   79 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKG-IWMWCVPH   79 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCS-EEEEEEEC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCc-eEEEEeec
Confidence            4899999999999999999998641          2345 66655555

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.0046  Score=46.71  Aligned_cols=20  Identities=20%  Similarity=0.426  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q psy7367          30 TSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++++|..|+|||||++.+.+
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998884

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.30  E-value=0.0039  Score=47.53  Aligned_cols=29  Identities=21%  Similarity=0.342  Sum_probs=24.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCCCCeeEE
Q psy7367          30 TSFLGHNGAGKTTTISMLMGMLPVSSGTA   58 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl~~p~~G~i   58 (251)
                      +.|+|..|+|||||++-+..-..|+.|..
T Consensus         5 ivllG~~~vGKTsl~~r~~~~~~~t~~~~   33 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKIIHEAGTGIV   33 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred             EEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence            68999999999999999877666777743

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.0047  Score=47.31  Aligned_cols=21  Identities=19%  Similarity=0.235  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~G   49 (251)
                      -++|+|..|+|||||++.+.+
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999987765

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.25  E-value=0.003  Score=52.00  Aligned_cols=29  Identities=21%  Similarity=0.243  Sum_probs=24.1

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .+++..-+-|.||.|+|||+|.+++++.+
T Consensus        37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          37 GMTPSKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence            34445558899999999999999999866

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=95.24  E-value=0.006  Score=47.39  Aligned_cols=22  Identities=36%  Similarity=0.548  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCC
Q psy7367          30 TSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +||+|.-.+|||||++.|+|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            7999999999999999999854

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.23  E-value=0.0047  Score=47.50  Aligned_cols=28  Identities=21%  Similarity=0.292  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC--CCCCee
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM--LPVSSG   56 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl--~~p~~G   56 (251)
                      -+.|+|..|+|||||++-+.-.  ..||-|
T Consensus         4 KivllG~~~vGKTsll~r~~f~~~~~pTiG   33 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG   33 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence            3679999999999999988432  357877

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.23  E-value=0.0032  Score=50.73  Aligned_cols=23  Identities=30%  Similarity=0.393  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ++.|.||.|+||||+++.++..+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            45667999999999999998754

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.23  E-value=0.0028  Score=48.18  Aligned_cols=20  Identities=25%  Similarity=0.433  Sum_probs=8.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q psy7367          30 TSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++|+|..|+|||||++.+++
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987765

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.20  E-value=0.0044  Score=46.96  Aligned_cols=20  Identities=20%  Similarity=0.393  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q psy7367          30 TSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~G   49 (251)
                      +.++|..|+|||||++.+.+
T Consensus         7 i~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67899999999999998765

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.19  E-value=0.021  Score=44.68  Aligned_cols=54  Identities=11%  Similarity=0.136  Sum_probs=40.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHH-HhhcCEEEEe
Q psy7367         150 GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEA-DLLGDRIAII  204 (251)
Q Consensus       150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~-~~~~d~i~~l  204 (251)
                      +.+++|+|| .-.|...++..+++.|.+-..++.+|++|++.+.+ ..+-.|+..+
T Consensus        79 ~~KviIId~-ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~SRC~~i  133 (198)
T d2gnoa2          79 TRKYVIVHD-CERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRV  133 (198)
T ss_dssp             SSEEEEETT-GGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred             CCEEEEEeC-ccccchhhhhHHHHHHhCCCCCceeeeccCChhhCHHHHhcceEEE
Confidence            458999999 46788999999999999887788888999887532 3334454443

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.17  E-value=0.0051  Score=50.14  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -+.+.||.|+|||+|.+.|+...
T Consensus        44 giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEecCCCCChhHHHHHHHHHc
Confidence            37899999999999999999743

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.15  E-value=0.0023  Score=54.19  Aligned_cols=26  Identities=31%  Similarity=0.538  Sum_probs=23.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCCCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGMLPV   53 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~~p   53 (251)
                      .-+.|.||-|+|||||+|.++++++|
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCCC
Confidence            35789999999999999999999976

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.0046  Score=46.69  Aligned_cols=20  Identities=25%  Similarity=0.473  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q psy7367          30 TSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++|+|+.|+|||||++.+.+
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999997644

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.13  E-value=0.0085  Score=49.87  Aligned_cols=33  Identities=15%  Similarity=0.203  Sum_probs=26.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC------------CCCeeEEEEc
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML------------PVSSGTAKIY   61 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~------------~p~~G~i~~~   61 (251)
                      -+||+|...||||||+++|++--            .|.-|.|.+.
T Consensus        12 kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~   56 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVP   56 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEecc
Confidence            49999999999999999999753            3456877654

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.13  E-value=0.0053  Score=48.83  Aligned_cols=28  Identities=25%  Similarity=0.354  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHh-CCCCCCee
Q psy7367          29 ITSFLGHNGAGKTTTISMLM-GMLPVSSG   56 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~-Gl~~p~~G   56 (251)
                      -+.|+|++|+|||||++-+. +-..|+-|
T Consensus         8 KilllG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence            46899999999999999764 34456665

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.0057  Score=47.01  Aligned_cols=20  Identities=20%  Similarity=0.312  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q psy7367          30 TSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++|+|..|+|||||++.+..
T Consensus        12 i~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            78999999999999988664

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.04  E-value=0.0056  Score=51.29  Aligned_cols=62  Identities=16%  Similarity=0.115  Sum_probs=36.3

Q ss_pred             CCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhh-hCCCeEEEEeCCHHHHH
Q psy7367         130 ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTHYMDEAD  195 (251)
Q Consensus       130 ~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l-~~g~tiii~tHd~~~~~  195 (251)
                      ..+++.-+.+++.-..-+...|-++.+=.    .|....+.+-++.+.. .++..|+-++...+...
T Consensus       195 ~~~~~~~e~~~~~~~~~~~~kP~~~v~Nk----~d~~~~e~~~~~~~~~~~~~~~vi~~sa~~E~~L  257 (319)
T d1wxqa1         195 PTKWSQDDLLAFASEIRRVNKPMVIAANK----ADAASDEQIKRLVREEEKRGYIVIPTSAAAELTL  257 (319)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHSCEEEEEEC----GGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred             hhhcCHHHHHHhHHHhhhhcCchhhhccc----ccchhhHHHHHHHHHHhhcCCEEEEecHHHHHHH
Confidence            45677778888777777777887777432    1111233333444444 35777777777666543

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.02  E-value=0.0072  Score=50.24  Aligned_cols=26  Identities=15%  Similarity=0.259  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCC-CC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGMLP-VS   54 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~~-p~   54 (251)
                      -++++|.-.||||||+++|+|..- |+
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~~lP~   52 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRDFLPR   52 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence            378999999999999999999763 44

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.0065  Score=45.68  Aligned_cols=20  Identities=25%  Similarity=0.433  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q psy7367          30 TSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++|+|..|+|||||++-+..
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            68999999999999998764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.95  E-value=0.0067  Score=45.82  Aligned_cols=21  Identities=24%  Similarity=0.354  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~G   49 (251)
                      -+.|+|..|+|||||++.+.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.94  E-value=0.0064  Score=46.56  Aligned_cols=21  Identities=19%  Similarity=0.344  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~G   49 (251)
                      -+.++|..|+|||||++-+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            368999999999999976544

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.91  E-value=0.0066  Score=49.59  Aligned_cols=28  Identities=21%  Similarity=0.190  Sum_probs=22.5

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          22 VNFYEDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        22 l~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +..+.|  +-|.||.|+|||+|.++++...
T Consensus        35 ~~~~~g--iLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          35 VKPPRG--ILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             CCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCCce--eEEecCCCCCchHHHHHHHHHh
Confidence            333444  7899999999999999999854

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.86  E-value=0.0077  Score=49.76  Aligned_cols=22  Identities=23%  Similarity=0.444  Sum_probs=20.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCC
Q psy7367          30 TSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ++++|.-.||||||+++|+|.-
T Consensus        29 ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHHTSC
T ss_pred             EEEEcCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999975

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.81  E-value=0.014  Score=45.14  Aligned_cols=32  Identities=25%  Similarity=0.336  Sum_probs=23.9

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q psy7367          16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLM   48 (251)
Q Consensus        16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~   48 (251)
                      .++..-+. -.|.-+.|.|++|+|||||.-.+.
T Consensus         4 ~lH~~~v~-~~g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_           4 SMHGVLVD-IYGLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             EEEEEEEE-ETTEEEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHH
Confidence            45554443 456789999999999999876655

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.008  Score=47.80  Aligned_cols=25  Identities=28%  Similarity=0.410  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      .+++|=|+=||||||+++.|.--+.
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHh
Confidence            4789999999999999999997553

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.0078  Score=46.38  Aligned_cols=20  Identities=20%  Similarity=0.282  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhC
Q psy7367          30 TSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~G   49 (251)
                      ++|+|+.|+|||||++.+.+
T Consensus         6 vvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999977654

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=94.60  E-value=0.014  Score=48.06  Aligned_cols=33  Identities=18%  Similarity=0.218  Sum_probs=26.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC-----------CCCeeEEEEc
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML-----------PVSSGTAKIY   61 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~-----------~p~~G~i~~~   61 (251)
                      -+||||-..+|||||++.|++--           .|.-|.|.+.
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~   47 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMP   47 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECC
T ss_pred             eEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecc
Confidence            58999999999999999999543           4556877553

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.57  E-value=0.0061  Score=53.98  Aligned_cols=23  Identities=26%  Similarity=0.354  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      =+.++||+|||||-|.|.|++++
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999976

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.38  E-value=0.019  Score=44.03  Aligned_cols=32  Identities=22%  Similarity=0.215  Sum_probs=23.4

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q psy7367          16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLM   48 (251)
Q Consensus        16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~   48 (251)
                      .++. ++-.-.|.-+.|.|++|+|||||.-.+.
T Consensus         5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2           5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             EEES-EEEEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHH
Confidence            3444 3334567889999999999999875544

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.34  E-value=0.0092  Score=47.66  Aligned_cols=22  Identities=36%  Similarity=0.539  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      ++.|.|.=||||||||+-+..-
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            6889999999999999988763

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.34  E-value=0.012  Score=49.59  Aligned_cols=24  Identities=33%  Similarity=0.360  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ..+.++||+|+|||.|.+.|+-.+
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCcchhHHHHHHHHhhc
Confidence            468899999999999999999865

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.11  E-value=0.013  Score=44.64  Aligned_cols=27  Identities=26%  Similarity=0.310  Sum_probs=21.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC---CCCCee
Q psy7367          30 TSFLGHNGAGKTTTISMLMGM---LPVSSG   56 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl---~~p~~G   56 (251)
                      +.++|..|+|||||++-+..-   ..||-|
T Consensus         5 iv~lG~~~vGKTsll~r~~~~~~~~~pTiG   34 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRIIHGSGVPTTG   34 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence            689999999999999988643   346655

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=94.08  E-value=0.012  Score=48.44  Aligned_cols=29  Identities=34%  Similarity=0.570  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHH---hCCCCCCeeEE
Q psy7367          29 ITSFLGHNGAGKTTTISML---MGMLPVSSGTA   58 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l---~Gl~~p~~G~i   58 (251)
                      -++|+|+.|||||||...|   +|... ..|++
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~-~~g~v   35 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKE-RRGRV   35 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSS-SCCCG
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCch-hhccc
Confidence            3799999999999999999   55432 34443

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.92  E-value=0.015  Score=45.70  Aligned_cols=19  Identities=37%  Similarity=0.482  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q psy7367          30 TSFLGHNGAGKTTTISMLM   48 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~   48 (251)
                      ++++|+-+||||||+..|.
T Consensus         6 i~iiGhvd~GKSTL~~~Ll   24 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALT   24 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHH
Confidence            7999999999999999995

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=93.89  E-value=0.019  Score=44.76  Aligned_cols=24  Identities=29%  Similarity=0.493  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      -++|+|.=.||||||++.|.|...
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~~   33 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIWT   33 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhhc
Confidence            489999999999999999998653

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=93.86  E-value=0.013  Score=50.40  Aligned_cols=30  Identities=27%  Similarity=0.293  Sum_probs=27.1

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      .++++.++.+.||.|+||||+.+.|++.+.
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            457888999999999999999999999764

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.85  E-value=0.017  Score=47.77  Aligned_cols=30  Identities=27%  Similarity=0.392  Sum_probs=26.0

Q ss_pred             eeEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367          20 LNVNFYEDQITSFLGHNGAGKTTTISMLMG   49 (251)
Q Consensus        20 isl~i~~Ge~~~liG~NGaGKSTLlk~l~G   49 (251)
                      .=+.+-+|+..+|+|+.|+|||||+..++-
T Consensus        61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          61 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             HHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             eeccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence            346889999999999999999999777754

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.67  E-value=0.017  Score=47.88  Aligned_cols=24  Identities=33%  Similarity=0.376  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHH---hCCCC
Q psy7367          29 ITSFLGHNGAGKTTTISML---MGMLP   52 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l---~Gl~~   52 (251)
                      -++|+|+.|||||||...|   +|...
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~   34 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIH   34 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccc
Confidence            3799999999999999998   55544

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.18  E-value=0.023  Score=44.89  Aligned_cols=44  Identities=9%  Similarity=0.144  Sum_probs=34.1

Q ss_pred             ccCCCEEEEeCCCC-CCCHHHHHHHHHHHHhhh-CCCeEEEEeCCH
Q psy7367         148 IGGSRTVILDEPTS-GVDPYSRRSIWELLIKYK-KGRTVILTTHYM  191 (251)
Q Consensus       148 ~~~p~llllDEPt~-gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~  191 (251)
                      ....+++++|+--. .-++..+..++.++.... .|+.+|++|...
T Consensus        95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~  140 (213)
T d1l8qa2          95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH  140 (213)
T ss_dssp             HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCc
Confidence            56899999998643 346788888999998874 688888888743

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.11  E-value=0.022  Score=49.15  Aligned_cols=41  Identities=24%  Similarity=0.174  Sum_probs=28.9

Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhhhC-CCeEEEEeCCHHHHHh
Q psy7367         153 TVILDEPTSGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADL  196 (251)
Q Consensus       153 llllDEPt~gLD~~~~~~l~~~l~~l~~-g~tiii~tHd~~~~~~  196 (251)
                      ++++||--+-...   ..+.+++.+.++ |..++++++++..+..
T Consensus       279 ~l~lDE~~~~~~~---~~l~~~l~~~Rk~Gv~~~l~~Qs~~ql~~  320 (433)
T d1e9ra_         279 WLFIDELASLEKL---ASLADALTKGRKAGLRVVAGLQSTSQLDD  320 (433)
T ss_dssp             EEEESCGGGSCBC---SSHHHHHHHCTTTTEEEEEEESCHHHHHH
T ss_pred             EEEechHhhhccc---HHHHHHHHHhCCCCceEEEEeccHHHHHH
Confidence            6888995443331   135567777754 9999999999888754

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.06  E-value=0.026  Score=44.26  Aligned_cols=43  Identities=12%  Similarity=0.134  Sum_probs=33.3

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHH
Q psy7367         150 GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDE  193 (251)
Q Consensus       150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~  193 (251)
                      +.+++|+||. -.|...++..+++.|.+...+..+|++|++..-
T Consensus       108 ~~kviIide~-d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~  150 (207)
T d1a5ta2         108 GAKVVWVTDA-ALLTDAAANALLKTLEEPPAETWFFLATREPER  150 (207)
T ss_dssp             SCEEEEESCG-GGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGG
T ss_pred             ccceEEechh-hhhhhhhhHHHHHHHHhhcccceeeeeecChhh
Confidence            3779999975 456677888888888777667788889998763

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=92.16  E-value=0.034  Score=43.43  Aligned_cols=21  Identities=29%  Similarity=0.439  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q psy7367          30 TSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      +|++|.-.+|||||++.|.+.
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHH
Confidence            789999999999999999764

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=92.10  E-value=0.028  Score=46.51  Aligned_cols=38  Identities=13%  Similarity=0.016  Sum_probs=28.5

Q ss_pred             eeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeE
Q psy7367          20 LNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT   57 (251)
Q Consensus        20 isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~   57 (251)
                      .=+.+-+|+..+|+|+.|+|||||+..++-...-+...
T Consensus        60 ~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v   97 (276)
T d1fx0a3          60 AMIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVI   97 (276)
T ss_dssp             TTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCE
T ss_pred             ccccccCCceEeeccCCCCChHHHHHHHHhhhcccCce
Confidence            34678899999999999999999987654433333333

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=92.04  E-value=0.056  Score=45.74  Aligned_cols=28  Identities=25%  Similarity=0.169  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCCCee
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGMLPVSSG   56 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~~p~~G   56 (251)
                      .+.|=|+=||||||+++.|+.-+....+
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~   35 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASGGSP   35 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGCSSC
T ss_pred             EEEEECCccCCHHHHHHHHHHHhccCCC
Confidence            4678899999999999999987765433

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.89  E-value=0.042  Score=46.10  Aligned_cols=25  Identities=36%  Similarity=0.396  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .-++.++||+|+|||.|.+.|+-.+
T Consensus        53 ~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          53 IGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             SEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCcchHHHHHHHHHHHh
Confidence            3467899999999999999999765

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.74  E-value=0.044  Score=43.35  Aligned_cols=19  Identities=32%  Similarity=0.538  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q psy7367          30 TSFLGHNGAGKTTTISMLM   48 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~   48 (251)
                      ++++|.-++|||||+..|.
T Consensus         6 i~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHH
Confidence            7899999999999999883

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=91.57  E-value=0.04  Score=46.20  Aligned_cols=20  Identities=35%  Similarity=0.596  Sum_probs=17.9

Q ss_pred             eCCcEEEEEcCCCCcHHHHH
Q psy7367          25 YEDQITSFLGHNGAGKTTTI   44 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLl   44 (251)
                      +.|++..+.|.||+|||||-
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            46899999999999999975

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=91.42  E-value=0.042  Score=46.21  Aligned_cols=19  Identities=42%  Similarity=0.716  Sum_probs=17.2

Q ss_pred             CCcEEEEEcCCCCcHHHHH
Q psy7367          26 EDQITSFLGHNGAGKTTTI   44 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLl   44 (251)
                      .|++..+.|.||+|||||-
T Consensus        13 ~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHT
T ss_pred             CCCEEEEEccCCCCccccc
Confidence            5899999999999999973

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=91.31  E-value=0.044  Score=46.40  Aligned_cols=35  Identities=17%  Similarity=0.246  Sum_probs=26.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcce
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH   63 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~   63 (251)
                      .+.|=|+=||||||+++.|+-.+......+.+-.+
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~E   41 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGE   41 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEECC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEeC
Confidence            47888999999999999999877654334444333

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=91.22  E-value=0.049  Score=45.90  Aligned_cols=32  Identities=16%  Similarity=0.149  Sum_probs=24.6

Q ss_pred             eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          18 NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        18 ~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      +-+-...++| ++.+.||.|+|||.|.+.|++-
T Consensus       115 ~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         115 EFGGHRYASG-MVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EETTEEEESE-EEEEECSSSSCHHHHHHHHHHH
T ss_pred             HHhhcccCCc-eEEEECCCCccHHHHHHHHHHH
Confidence            3334455665 6667899999999999999974

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.12  E-value=0.052  Score=44.45  Aligned_cols=32  Identities=19%  Similarity=0.228  Sum_probs=26.8

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCee
Q psy7367          24 FYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG   56 (251)
Q Consensus        24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G   56 (251)
                      .++-.++.+.||-++|||||+++|+.++ ++.|
T Consensus       101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~~  132 (267)
T d1u0ja_         101 FGKRNTIWLFGPATTGKTNIAEAIAHTV-PFYG  132 (267)
T ss_dssp             STTCCEEEEECSTTSSHHHHHHHHHHHS-SCEE
T ss_pred             CCccEEEEEEcCCCCCHHHHHHHHHHHh-cchh
Confidence            3556789999999999999999999987 5444

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=91.08  E-value=0.057  Score=46.21  Aligned_cols=28  Identities=25%  Similarity=0.398  Sum_probs=22.5

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          23 NFYEDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      +++++. +-++||+|+|||-|.|.|+-+.
T Consensus        65 ~~p~~n-iLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          65 ELSKSN-ILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             TCCCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred             cCCCcc-eeeeCCCCccHHHHHHHHHhhc
Confidence            345665 5567999999999999999765

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=91.06  E-value=0.064  Score=41.94  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      -..|+||.|.|||++..-++-.+
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHH
Confidence            46899999999999999988643

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=91.00  E-value=0.061  Score=44.10  Aligned_cols=24  Identities=25%  Similarity=0.319  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          28 QITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        28 e~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      .-+.|+||.|+|||+++.-++-.+
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHH
Confidence            346799999999999999988643

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.58  E-value=0.043  Score=45.49  Aligned_cols=29  Identities=21%  Similarity=0.146  Sum_probs=24.9

Q ss_pred             eeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q psy7367          20 LNVNFYEDQITSFLGHNGAGKTTTISMLM   48 (251)
Q Consensus        20 isl~i~~Ge~~~liG~NGaGKSTLlk~l~   48 (251)
                      .=+.+-+|+..+|+|+.|+|||||+.-++
T Consensus        61 ~l~pig~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          61 SLVPIGRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             HHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             cccCccCCCEEEeecCCCCChHHHHHHHH
Confidence            34688999999999999999999976554

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=90.50  E-value=0.064  Score=45.34  Aligned_cols=24  Identities=33%  Similarity=0.416  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          29 ITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        29 ~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      .++|=|+=||||||+++.|...+.
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhC
Confidence            377889999999999999987553

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.40  E-value=0.063  Score=45.17  Aligned_cols=19  Identities=42%  Similarity=0.716  Sum_probs=17.7

Q ss_pred             CCcEEEEEcCCCCcHHHHH
Q psy7367          26 EDQITSFLGHNGAGKTTTI   44 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLl   44 (251)
                      .|++..+.|-||+|||||-
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            6889999999999999996

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=89.88  E-value=0.09  Score=41.68  Aligned_cols=19  Identities=32%  Similarity=0.342  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q psy7367          30 TSFLGHNGAGKTTTISMLM   48 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~   48 (251)
                      ++++|.-.+|||||+..|.
T Consensus        12 i~viGHVd~GKSTL~~~Ll   30 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLL   30 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            6899999999999999994

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=89.34  E-value=0.069  Score=43.22  Aligned_cols=16  Identities=38%  Similarity=0.449  Sum_probs=13.5

Q ss_pred             EEEEEcCCCCcHHHHH
Q psy7367          29 ITSFLGHNGAGKTTTI   44 (251)
Q Consensus        29 ~~~liG~NGaGKSTLl   44 (251)
                      -+.|+|+-||||||+|
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            4679999999999764

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=89.26  E-value=0.13  Score=37.80  Aligned_cols=24  Identities=33%  Similarity=0.236  Sum_probs=20.4

Q ss_pred             CcEEEEEcCCCCcHHH-HHHHHhCC
Q psy7367          27 DQITSFLGHNGAGKTT-TISMLMGM   50 (251)
Q Consensus        27 Ge~~~liG~NGaGKST-Llk~l~Gl   50 (251)
                      |.+..++||=.||||| |++.+-..
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~   26 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRL   26 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHH
Confidence            7788999999999999 77777544

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=89.25  E-value=0.076  Score=43.48  Aligned_cols=16  Identities=25%  Similarity=0.401  Sum_probs=13.5

Q ss_pred             EEEEEcCCCCcHHHHH
Q psy7367          29 ITSFLGHNGAGKTTTI   44 (251)
Q Consensus        29 ~~~liG~NGaGKSTLl   44 (251)
                      .+.|.|+-||||||.|
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4678899999999865

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=88.91  E-value=0.16  Score=41.22  Aligned_cols=27  Identities=22%  Similarity=0.159  Sum_probs=23.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhCCCCC
Q psy7367          27 DQITSFLGHNGAGKTTTISMLMGMLPV   53 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk~l~Gl~~p   53 (251)
                      +-.++|+|...+|||||+|.|.|-...
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~~~~  138 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKKNIA  138 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred             ceEEEEEecCccchhhhhhhhhccceE
Confidence            345899999999999999999996543

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=88.54  E-value=0.043  Score=38.86  Aligned_cols=21  Identities=33%  Similarity=0.333  Sum_probs=17.8

Q ss_pred             EeCCcEEEEEcCCCCcHHHHH
Q psy7367          24 FYEDQITSFLGHNGAGKTTTI   44 (251)
Q Consensus        24 i~~Ge~~~liG~NGaGKSTLl   44 (251)
                      +++|+.+.|..|.|||||+..
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            467999999999999999543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.30  E-value=0.13  Score=41.21  Aligned_cols=19  Identities=37%  Similarity=0.611  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q psy7367          30 TSFLGHNGAGKTTTISMLM   48 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~   48 (251)
                      ++++|.-++|||||...|+
T Consensus         9 i~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           9 VVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            6899999999999998884

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=87.82  E-value=0.16  Score=43.19  Aligned_cols=19  Identities=42%  Similarity=0.660  Sum_probs=16.9

Q ss_pred             CcEEEEEcCCCCcHHHHHH
Q psy7367          27 DQITSFLGHNGAGKTTTIS   45 (251)
Q Consensus        27 Ge~~~liG~NGaGKSTLlk   45 (251)
                      +.++.|.||-|+||||++.
T Consensus       163 ~~~~vI~G~pGTGKTt~i~  181 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVA  181 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHH
Confidence            5699999999999999874

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.74  E-value=0.17  Score=36.32  Aligned_cols=29  Identities=7%  Similarity=-0.042  Sum_probs=22.9

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHh-CCCCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLM-GMLPV   53 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~-Gl~~p   53 (251)
                      +.|=.+.+.|-+||||||+.++|. -|..-
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~   33 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFLQF   33 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTS
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            356678899999999999999984 44443

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=87.56  E-value=0.11  Score=41.75  Aligned_cols=18  Identities=39%  Similarity=0.558  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q psy7367          30 TSFLGHNGAGKTTTISML   47 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l   47 (251)
                      ++++|.-++|||||+..|
T Consensus        27 i~iiGHVD~GKSTL~~~L   44 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNI   44 (245)
T ss_dssp             EEEEECGGGTHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHH
Confidence            799999999999999988

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.48  E-value=0.12  Score=43.82  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHH---hCCC
Q psy7367          30 TSFLGHNGAGKTTTISML---MGML   51 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l---~Gl~   51 (251)
                      ++|+|+-|+|||||+..|   +|..
T Consensus        20 I~iiGhvd~GKTTL~d~Ll~~~g~i   44 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLVQRAGII   44 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHHHHHBCC
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCc
Confidence            899999999999999999   4654

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=87.26  E-value=0.087  Score=42.64  Aligned_cols=19  Identities=42%  Similarity=0.555  Sum_probs=17.3

Q ss_pred             EeCCcEEEEEcCCCCcHHH
Q psy7367          24 FYEDQITSFLGHNGAGKTT   42 (251)
Q Consensus        24 i~~Ge~~~liG~NGaGKST   42 (251)
                      +.+|+.+.|.+|.|||||+
T Consensus         6 ~~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTT
T ss_pred             hhcCCcEEEEECCCCCHHH
Confidence            4689999999999999997

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.20  E-value=0.33  Score=36.32  Aligned_cols=59  Identities=22%  Similarity=0.082  Sum_probs=45.5

Q ss_pred             ccCCCEEEEeCCCCC--CCHHHHHHHHHHHHhhhCCCeEEEEeCCH-HHHHhhcCEEEEeeC
Q psy7367         148 IGGSRTVILDEPTSG--VDPYSRRSIWELLIKYKKGRTVILTTHYM-DEADLLGDRIAIIAA  206 (251)
Q Consensus       148 ~~~p~llllDEPt~g--LD~~~~~~l~~~l~~l~~g~tiii~tHd~-~~~~~~~d~i~~l~~  206 (251)
                      ..+.+++||||-..+  +.....+.++++|....++.-+|++-++. +++..+||.|.-|+.
T Consensus        92 ~~~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evVlTGr~~p~~L~e~ADlVTEm~~  153 (157)
T d1g5ta_          92 DPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRP  153 (157)
T ss_dssp             CTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred             cCccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhcceeeeeee
Confidence            345799999997654  44456778888887755688999999864 677788999988864

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=86.67  E-value=0.19  Score=46.38  Aligned_cols=26  Identities=35%  Similarity=0.477  Sum_probs=22.4

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGM   50 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl   50 (251)
                      ...+++.|.|.+|||||+-.|.|+..
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~y  109 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQF  109 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            45789999999999999999988654

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=86.25  E-value=0.19  Score=46.57  Aligned_cols=27  Identities=30%  Similarity=0.422  Sum_probs=23.4

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ...+++.|.|.+|||||+-.|.|+..+
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999987654

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=86.06  E-value=0.16  Score=36.16  Aligned_cols=33  Identities=24%  Similarity=0.122  Sum_probs=23.9

Q ss_pred             HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh
Q psy7367         146 AFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK  179 (251)
Q Consensus       146 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~  179 (251)
                      ....+-+++|+||-= .+|..+...+..++..++
T Consensus        90 ~~~~~~~~vIiDE~H-~~~~~~~~~~~~~l~~~~  122 (136)
T d1a1va1          90 CSGGAYDIIICDECH-STDATSILGIGTVLDQAE  122 (136)
T ss_dssp             GGGCCCSEEEEETTT-CCSHHHHHHHHHHHHHTT
T ss_pred             hhhhcCCEEEEeccc-ccCHHHHHHHHHHHHHHH
Confidence            345678999999985 468877766766666654

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=85.55  E-value=0.11  Score=40.80  Aligned_cols=29  Identities=14%  Similarity=0.147  Sum_probs=26.0

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367          24 FYEDQITSFLGHNGAGKTTTISMLMGMLP   52 (251)
Q Consensus        24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~   52 (251)
                      +++-.++.+.||-++|||++...|+.++.
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            57778999999999999999999998864

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=85.43  E-value=0.22  Score=46.09  Aligned_cols=27  Identities=37%  Similarity=0.463  Sum_probs=23.0

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ...+++.|.|.+|||||+-.|.|+..+
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            356899999999999999998886654

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.30  E-value=0.26  Score=35.71  Aligned_cols=23  Identities=30%  Similarity=0.365  Sum_probs=18.6

Q ss_pred             CCcEEEEEcCCCCcHHHHH-HHHh
Q psy7367          26 EDQITSFLGHNGAGKTTTI-SMLM   48 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLl-k~l~   48 (251)
                      +|.+..|+||=.|||||-| +.+.
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~   24 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVR   24 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHHHH
Confidence            5889999999999999954 4443

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=85.26  E-value=0.23  Score=39.71  Aligned_cols=27  Identities=15%  Similarity=0.224  Sum_probs=22.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q psy7367         150 GSRTVILDEPTSGVDPYSRRSIWELLIK  177 (251)
Q Consensus       150 ~p~llllDEPt~gLD~~~~~~l~~~l~~  177 (251)
                      +--.|++||. ..|++..+..+.+.|.+
T Consensus        94 ~gGtL~l~~i-~~L~~~~Q~~L~~~l~~  120 (247)
T d1ny5a2          94 DGGTLFLDEI-GELSLEAQAKLLRVIES  120 (247)
T ss_dssp             TTSEEEEESG-GGCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCh-HhCCHHHHHHHHHHHHh
Confidence            4567899998 67899999999999975

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=84.56  E-value=0.23  Score=42.65  Aligned_cols=19  Identities=32%  Similarity=0.564  Sum_probs=16.3

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q psy7367          30 TSFLGHNGAGKTTTISMLM   48 (251)
Q Consensus        30 ~~liG~NGaGKSTLlk~l~   48 (251)
                      ..|+||.|+|||+++.-++
T Consensus        46 ~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHH
Confidence            5789999999999987555

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=83.94  E-value=0.28  Score=46.06  Aligned_cols=27  Identities=30%  Similarity=0.427  Sum_probs=22.5

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ...+.+.|.|.+|||||+-.|.|+..+
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            356899999999999999888777554

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=82.47  E-value=0.3  Score=45.76  Aligned_cols=26  Identities=35%  Similarity=0.464  Sum_probs=21.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          26 EDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ..+++.|.|.+|||||.-.|.|+..+
T Consensus       120 ~nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         120 ENQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            46899999999999999977776543

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=81.79  E-value=0.39  Score=44.53  Aligned_cols=27  Identities=30%  Similarity=0.373  Sum_probs=23.1

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367          25 YEDQITSFLGHNGAGKTTTISMLMGML   51 (251)
Q Consensus        25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~   51 (251)
                      ...+++.|.|.+|||||+-.|.++..+
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999887644