Psyllid ID: psy7370

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
Protein Sequence
MAVQYNRSTDVTGNLTRMEQAFFTVLQFFCGNTSARHTLEEYKNNKCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTLTYSIRMSTTLIGDTYISDHFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRKSTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVIT
Secondary Structure (PSIPRED)
ccEEEcccccccccccccccccccEEEEEcccHHHHHHHHHHHHHcccccccEEEcccHHHHHHHHHHHcccccEEEEEEEcccccccccccEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEcccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHccEcccEcccccHHHHHHHHHHHHHcccEEEEEEEcccccccccccEEEEEEEEcccccccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mavqynrstdvtgNLTRMEQAFFTVLQFFcgntsarhtleeyknnkcidfnkivpyndsataendAFLRMDNNTLWALInftqpgydklkptltYSIRMSTTLIGdtyisdhfytldprsrplydlkyITFGFAYLQDMVEQSIIqehtgrkstpgivlqqfpypcyiedqFIKAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGlsngvhwtAWFIDSIVVMIITAVLLSLLLVIT
Flexible Loop (DISEMBL)
mavqynrstdvtgnlTRMEQAFFTVLQFFCGNTSARHTLeeyknnkcidfnkiVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTLTYSIRMSTTLIGDTYISDHFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEhtgrkstpgIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVIT
Low Complexity Region (SEG)
MAVQYNRSTDVTGNLTRMEQAFFTVLQFFCGNTSARHTLEEYKNNKCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTLTYSIRMSTTLIGDTYISDHFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRKSTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVIT
Disordered region (IsUnstruct)
************GNLTRMEQAFFTVLQFFCGNTSARHTLEEYKNNKCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTLTYSIRMSTTLIGDTYISDHFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRKSTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVI*
Disordered Region (DISOPRED)
**************LTRMEQAFFTVLQFFCGNTSARHTLEEYKNNKCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTLTYSIRMSTTLIGDTYISDHFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRKSTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVIT
Disordered Region (DISEMBL)
*********DVTGNLTRMEQAFFTVLQFFCGNTSARHTLEEYKNNKCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTLTYSIRMSTTLIGDTYISDHFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRKSTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVIT
Disordered Region (DISPRO)
*AV*YNRSTDVTGNLTRMEQAFFTVLQFFCGNTSARHTLEEYKNNKCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTLTYSIRMSTTLIGDTYISDHFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRKSTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVIT
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVQYNRSTDVTGNLTRMEQAFFTVLQFFCGNTSARHTLEEYKNNKCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTLTYSIRMSTTLIGDTYISDHFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRKSTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVIT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	247	2.2.26 [Sep-21-2011]
P41233	2261	ATP-binding cassette sub-	yes	N/A	0.805	0.088	0.415	3e-44
O95477	2261	ATP-binding cassette sub-	yes	N/A	0.805	0.088	0.415	5e-44
P78363	2273	Retinal-specific ATP-bind	no	N/A	0.809	0.087	0.389	5e-40
O35600	2310	Retinal-specific ATP-bind	no	N/A	0.809	0.086	0.379	1e-39
Q7TNJ2	2170	ATP-binding cassette sub-	no	N/A	0.740	0.084	0.361	8e-34
Q91V24	2159	ATP-binding cassette sub-	no	N/A	0.736	0.084	0.351	2e-32
Q8IZY2	2146	ATP-binding cassette sub-	no	N/A	0.744	0.085	0.335	7e-32
Q9ESR9	2434	ATP-binding cassette sub-	no	N/A	0.692	0.070	0.380	7e-29
Q9BZC7	2435	ATP-binding cassette sub-	no	N/A	0.692	0.070	0.380	1e-28
P41234	2434	ATP-binding cassette sub-	no	N/A	0.692	0.070	0.375	7e-27

>sp|P41233|ABCA1_MOUSE ATP-binding cassette sub-family A member 1 OS=Mus musculus GN=Abca1 PE=1 SV=4

 Score =  178 bits (452), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 84/202 (41%), Positives = 130/202 (64%), Gaps = 3/202 (1%)

Query: 46  KCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQ--PGYDKLKPTLTYSIRMSTTL 103
           +C++ NK+ P        N +   +D    WA I FT   P   +L   + Y IRM    
Sbjct: 503 ECVNLNKLEPIPTEVRLINKSMELLDERKFWAGIVFTGITPDSVELPHHVKYKIRMDIDN 562

Query: 104 IGDT-YISDHFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRKSTPGIVLQQF 162
           +  T  I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  TG +   G+ +QQ 
Sbjct: 563 VERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVLTGSEKKTGVYVQQM 622

Query: 163 PYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHW 222
           PYPCY++D F++ +S++ PLFM L+W+++ A+I KSIVYEK+ RLKE MR+MGL NG+ W
Sbjct: 623 PYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKSIVYEKEARLKETMRIMGLDNGILW 682

Query: 223 TAWFIDSIVVMIITAVLLSLLL 244
            +WF+ S++ ++++A LL ++L
Sbjct: 683 FSWFVSSLIPLLVSAGLLVVIL 704

cAMP-dependent and sulfonylurea-sensitive anion transporter. Key gatekeeper influencing intracellular cholesterol transport.
Mus musculus (taxid: 10090)

>sp|O95477|ABCA1_HUMAN ATP-binding cassette sub-family A member 1 OS=Homo sapiens GN=ABCA1 PE=1 SV=3

 Score =  177 bits (450), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 84/202 (41%), Positives = 129/202 (63%), Gaps = 3/202 (1%)

Query: 46  KCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQ--PGYDKLKPTLTYSIRMSTTL 103
           +C++ NK+ P        N +   +D    WA I FT   PG  +L   + Y IRM    
Sbjct: 503 ECVNLNKLEPIATEVWLINKSMELLDERKFWAGIVFTGITPGSIELPHHVKYKIRMDIDN 562

Query: 104 IGDT-YISDHFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRKSTPGIVLQQF 162
           +  T  I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  TG +   G+ +QQ 
Sbjct: 563 VERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVLTGTEKKTGVYMQQM 622

Query: 163 PYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHW 222
           PYPCY++D F++ +S++ PLFM L+W+++ A+I K IVYEK+ RLKE MR+MGL N + W
Sbjct: 623 PYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLKETMRIMGLDNSILW 682

Query: 223 TAWFIDSIVVMIITAVLLSLLL 244
            +WFI S++ ++++A LL ++L
Sbjct: 683 FSWFISSLIPLLVSAGLLVVIL 704

cAMP-dependent and sulfonylurea-sensitive anion transporter. Key gatekeeper influencing intracellular cholesterol transport.

Homo sapiens (taxid: 9606)

>sp|P78363|ABCA4_HUMAN Retinal-specific ATP-binding cassette transporter OS=Homo sapiens GN=ABCA4 PE=1 SV=3

 Score =  164 bits (415), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 79/203 (38%), Positives = 121/203 (59%), Gaps = 3/203 (1%)

Query: 46  KCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQ--PGYDKLKPTLTYSIRMSTTL 103
           +C+  +K   YND       A   ++ N  WA + F    P    L P + Y IRM   +
Sbjct: 518 ECLVLDKFESYNDETQLTQRALSLLEENMFWAGVVFPDMYPWTSSLPPHVKYKIRMDIDV 577

Query: 104 IGDT-YISDHFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRKSTPGIVLQQF 162
           +  T  I D ++   PR+ P+ D +YI  GFAYLQDMVEQ I +     ++  GI LQQ 
Sbjct: 578 VEKTNKIKDRYWDSGPRADPVEDFRYIWGGFAYLQDMVEQGITRSQVQAEAPVGIYLQQM 637

Query: 163 PYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHW 222
           PYPC+++D F+  +++ FP+FMVL+W+++ +M  KSIV EK+ RLKE ++  G+SN V W
Sbjct: 638 PYPCFVDDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVIW 697

Query: 223 TAWFIDSIVVMIITAVLLSLLLV 245
             WF+DS  +M ++  LL++ ++
Sbjct: 698 CTWFLDSFSIMSMSIFLLTIFIM 720

In the visual cycle, acts as an inward-directed retinoid flipase, retinoid substrates imported by ABCA4 from the extracellular or intradiscal (rod) membrane surfaces to the cytoplasmic membrane surface are all-trans-retinaldehyde (ATR) and N-retinyl-phosphatidyl-ethanolamine (NR-PE). Once transported to the cytoplasmic surface, ATR is reduced to vitamin A by trans-retinol dehydrogenase (tRDH) and then transferred to the retinal pigment epithelium (RPE) where it is converted to 11-cis-retinal. May play a role in photoresponse, removing ATR/NR-PE from the extracellular photoreceptor surfaces during bleach recovery.

Homo sapiens (taxid: 9606)

>sp|O35600|ABCA4_MOUSE Retinal-specific ATP-binding cassette transporter OS=Mus musculus GN=Abca4 PE=2 SV=1

 Score =  162 bits (411), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/203 (37%), Positives = 120/203 (59%), Gaps = 3/203 (1%)

Query: 46  KCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQ--PGYDKLKPTLTYSIRMSTTL 103
           +C+  +K   Y+D       A   ++ N  WA + F    P    L P + Y IRM   +
Sbjct: 518 ECLVLDKFESYDDEVQLTQRALSLLEENRFWAGVVFPGMYPWASSLPPHVKYKIRMDIDV 577

Query: 104 IGDT-YISDHFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRKSTPGIVLQQF 162
           +  T  I D ++   PR+ P+ D +YI  GFAYLQDMVEQ I++     +   G+ LQQ 
Sbjct: 578 VEKTNKIKDRYWDSGPRADPVEDFRYIWGGFAYLQDMVEQGIVKSQMQAEPPIGVYLQQM 637

Query: 163 PYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHW 222
           PYPC+++D F+  +++ FP+FMVL+W+++ +M  K IV EK+ RLKE ++  G+SN V W
Sbjct: 638 PYPCFVDDSFMIILNRCFPIFMVLAWIYSVSMTVKGIVLEKELRLKETLKNQGVSNAVIW 697

Query: 223 TAWFIDSIVVMIITAVLLSLLLV 245
             WF+DS  +M ++  LL+L ++
Sbjct: 698 CTWFLDSFSIMALSIFLLTLFIM 720

In the visual cycle, acts as an inward-directed retinoid flipase, retinoid substrates imported by ABCA4 from the extracellular or intradiscal (rod) membrane surfaces to the cytoplasmic membrane surface are all-trans-retinaldehyde (ATR) and N-retinyl-phosphatidyl-ethanolamine (NR-PE). Once transported to the cytoplasmic surface, ATR is reduced to vitamin A by trans-retinol dehydrogenase (tRDH) and then transferred to the retinal pigment epithelium (RPE) where it is converted to 11-cis-retinal. May play a role in photoresponse, removing ATR/NR-PE from the extracellular photoreceptor surfaces during bleach recovery.

Mus musculus (taxid: 10090)

>sp|Q7TNJ2|ABCA7_RAT ATP-binding cassette sub-family A member 7 OS=Rattus norvegicus GN=Abca7 PE=1 SV=1

 Score =  144 bits (362), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 72/199 (36%), Positives = 114/199 (57%), Gaps = 16/199 (8%)

Query: 46  KCIDFNKI--VPYNDSATAENDAFLRMDNNTLWALINFTQPGY--DKLKPT--------- 92
           +C+  +K+  VP  ++  +   A   +    LWA I F  P +  D  +P          
Sbjct: 402 ECVSLDKLEAVPSEEALVSR--ALELLGERRLWAGIVFLSPEHPLDSSEPPSPTTTGPGH 459

Query: 93  LTYSIRMSTTLIGDT-YISDHFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGR 151
           L   IRM    +  T  I D F+   P + PL DL+Y+  GF YLQD++EQ+ ++  +GR
Sbjct: 460 LRVKIRMDIDDVTRTNKIRDKFWDPGPSADPLMDLRYVWGGFVYLQDLLEQAAVRVLSGR 519

Query: 152 KSTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMM 211
            S  G+ LQQ P+PCY++D F++ +S++ PLF+ L+W+++ A+  K++V EK+ RL+E M
Sbjct: 520 DSRAGLYLQQMPHPCYVDDVFLRVLSRSLPLFLTLAWIYSVALTVKAVVREKETRLRETM 579

Query: 212 RVMGLSNGVHWTAWFIDSI 230
           R MGLS  V W  WF+  +
Sbjct: 580 RAMGLSRAVLWLGWFLSCL 598

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Rattus norvegicus (taxid: 10116)

>sp|Q91V24|ABCA7_MOUSE ATP-binding cassette sub-family A member 7 OS=Mus musculus GN=Abca7 PE=1 SV=1

 Score =  139 bits (351), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 70/199 (35%), Positives = 112/199 (56%), Gaps = 17/199 (8%)

Query: 46  KCIDFNKI--VPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPT----------- 92
           +C+  +K+  VP  ++  +   A   +    LWA I F  P +  L P+           
Sbjct: 402 ECVSLDKLEAVPSEEALVSR--ALELLGERRLWAGIVFLSPEH-PLDPSELSSPALSPGH 458

Query: 93  LTYSIRMSTTLIGDT-YISDHFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGR 151
           L + IRM    +  T  I D F+   P + P  DL+Y+  GF YLQD++EQ+ ++   G 
Sbjct: 459 LRFKIRMDIDDVTRTNKIRDKFWDPGPSADPFMDLRYVWGGFVYLQDLLEQAAVRVLGGG 518

Query: 152 KSTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMM 211
            S  G+ LQQ P+PCY++D F++ +S++ PLF+ L+W+++ A+  K++V EK+ RL+E M
Sbjct: 519 NSRTGLYLQQMPHPCYVDDVFLRVLSRSLPLFLTLAWIYSVALTVKAVVREKETRLRETM 578

Query: 212 RVMGLSNGVHWTAWFIDSI 230
           R MGLS  V W  WF+  +
Sbjct: 579 RAMGLSRAVLWLGWFLSCL 597

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Mus musculus (taxid: 10090)

>sp|Q8IZY2|ABCA7_HUMAN ATP-binding cassette sub-family A member 7 OS=Homo sapiens GN=ABCA7 PE=1 SV=3

 Score =  137 bits (345), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 66/197 (33%), Positives = 108/197 (54%), Gaps = 13/197 (6%)

Query: 46  KCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPT-----------LT 94
           +C+  +K+      A   + A   +  +  WA + F  P  D   PT           + 
Sbjct: 405 ECLSLDKLEAAPSEAALVSRALQLLAEHRFWAGVVFLGP-EDSSDPTEHPTPDLGPGHVR 463

Query: 95  YSIRMSTTLIGDT-YISDHFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRKS 153
             IRM   ++  T  I D F+   P + PL DL+Y+  GF YLQD+VE++ ++  +G   
Sbjct: 464 IKIRMDIDVVTRTNKIRDRFWDPGPAADPLTDLRYVWGGFVYLQDLVERAAVRVLSGANP 523

Query: 154 TPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRV 213
             G+ LQQ PYPCY++D F++ +S++ PLF+ L+W+++  +  K++V EK+ RL++ MR 
Sbjct: 524 RAGLYLQQMPYPCYVDDVFLRVLSRSLPLFLTLAWIYSVTLTVKAVVREKETRLRDTMRA 583

Query: 214 MGLSNGVHWTAWFIDSI 230
           MGLS  V W  WF+  +
Sbjct: 584 MGLSRAVLWLGWFLSCL 600

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Homo sapiens (taxid: 9606)

>sp|Q9ESR9|ABCA2_RAT ATP-binding cassette sub-family A member 2 OS=Rattus norvegicus GN=Abca2 PE=1 SV=1

 Score =  127 bits (319), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 67/176 (38%), Positives = 99/176 (56%), Gaps = 5/176 (2%)

Query: 71  DNNTLWALINFTQPGYDKLKPTLTYSIRMSTTLIGDT-YISDHFYTLDPRSRPLYDLKYI 129
           DN T++A + F       L P + Y IR +++    T  I   ++   P +   +   Y 
Sbjct: 599 DNVTVFASVIFQTRKDGSLPPHVHYKIRQNSSFTEKTNEIRRAYWRPGPNTGGRF---YF 655

Query: 130 TFGFAYLQDMVEQSIIQEHTGRKST-PGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSW 188
            +GF ++QDM+E++II    G     PG  +Q FPYPCY  D F+  +    PL MV+SW
Sbjct: 656 LYGFVWIQDMIERAIINTFVGHDVVEPGNYVQMFPYPCYTRDDFLFVIEHMMPLCMVISW 715

Query: 189 VFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL 244
           V++ AM  + IV EK+ RLKE+M+ MGL+N VHW AWFI   V + I+   L+ +L
Sbjct: 716 VYSVAMTIQHIVAEKEHRLKEVMKTMGLNNAVHWVAWFITGFVQLSISVTALTAIL 771

Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development.

Rattus norvegicus (taxid: 10116)

>sp|Q9BZC7|ABCA2_HUMAN ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/176 (38%), Positives = 99/176 (56%), Gaps = 5/176 (2%)

Query: 71  DNNTLWALINFTQPGYDKLKPTLTYSIRMSTTLIGDT-YISDHFYTLDPRSRPLYDLKYI 129
           DN T++A + F       L P + Y IR +++    T  I   ++   P +   +   Y 
Sbjct: 599 DNVTVFASVIFQTRKDGSLPPHVHYKIRQNSSFTEKTNEIRRAYWRPGPNTGGRF---YF 655

Query: 130 TFGFAYLQDMVEQSIIQEHTGRKST-PGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSW 188
            +GF ++QDM+E++II    G     PG  +Q FPYPCY  D F+  +    PL MV+SW
Sbjct: 656 LYGFVWIQDMMERAIIDTFVGHDVVEPGSYVQMFPYPCYTRDDFLFVIEHMMPLCMVISW 715

Query: 189 VFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL 244
           V++ AM  + IV EK+ RLKE+M+ MGL+N VHW AWFI   V + I+   L+ +L
Sbjct: 716 VYSVAMTIQHIVAEKEHRLKEVMKTMGLNNAVHWVAWFITGFVQLSISVTALTAIL 771

Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development.

Homo sapiens (taxid: 9606)

>sp|P41234|ABCA2_MOUSE ATP-binding cassette sub-family A member 2 OS=Mus musculus GN=Abca2 PE=1 SV=4

 Score =  120 bits (302), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 66/176 (37%), Positives = 96/176 (54%), Gaps = 5/176 (2%)

Query: 71  DNNTLWALINFTQPGYDKLKPTLTYSIRMSTTLIGDT-YISDHFYTLDPRSRPLYDLKYI 129
           DN T++A + F       L P + Y IR +++    T  I   ++   P +   +   Y 
Sbjct: 598 DNVTVFASVIFQTRKDGSLPPHVHYKIRQNSSFTEKTNEIRRAYWRPGPNTGGRF---YF 654

Query: 130 TFGFAYLQDMVEQSIIQEHTGRKST-PGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSW 188
            +G    QDM+E++II    G     PG  +Q FPYPCY  D F+  +    PL MV+SW
Sbjct: 655 LYGLRLDQDMMERAIINTFVGHDVVEPGNYVQMFPYPCYTRDDFLFVIEHMMPLCMVISW 714

Query: 189 VFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL 244
           V++ AM  + IV EK+ RLKE+M+ MGL+N VHW AWFI   V + I+   L+ +L
Sbjct: 715 VYSVAMTIQHIVAEKEHRLKEVMKTMGLNNAVHWVAWFITGFVQLSISVTALTAIL 770

Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
391346004	2232	PREDICTED: ATP-binding cassette sub-fami	0.882	0.097	0.473	9e-51
443734953	2255	hypothetical protein CAPTEDRAFT_226736 [	0.809	0.088	0.443	5e-49
427784385	2338	Putative lipid exporter abca1 [Rhipiceph	0.829	0.087	0.466	1e-46
410926975	1535	PREDICTED: ATP-binding cassette sub-fami	0.805	0.129	0.445	2e-46
427795723	1079	hypothetical protein, partial [Rhipiceph	0.829	0.189	0.466	2e-46
405952754	2469	ATP-binding cassette sub-family A member	0.757	0.075	0.453	9e-45
323510624	2271	ATP-binding cassette, sub-family A (ABC1	0.919	0.099	0.400	2e-44
348524963	2269	PREDICTED: ATP-binding cassette sub-fami	0.805	0.087	0.418	5e-44
432848380	2271	PREDICTED: ATP-binding cassette sub-fami	0.805	0.087	0.418	8e-44
149738947	2261	PREDICTED: ATP-binding cassette sub-fami	0.805	0.088	0.425	1e-43

>gi|391346004|ref|XP_003747270.1| PREDICTED: ATP-binding cassette sub-family A member 1 [Metaseiulus occidentalis]

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 106/224 (47%), Positives = 141/224 (62%), Gaps = 6/224 (2%)

Query: 25  VLQFFCGNTSARHTLEEYKNNKCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQ- 83
           V ++  G     H +E   N  C++ N+   Y+       +    M  N LWA + FT  
Sbjct: 514 VPEYIQGANRIAHEIENALN--CVEMNRFEGYDREEDLMRNGLKLMAENKLWAALVFTNT 571

Query: 84  --PGYDKLKPTLTYSIRMSTTLIGDT-YISDHFYTLDPRSRPLYDLKYITFGFAYLQDMV 140
             P   K+   + Y IRM    +  T  I D  Y   PR RP  DLKYITFGFAYLQD+V
Sbjct: 572 GGPNSTKIPKFIRYKIRMDARKVDSTKRIEDRVYHPGPRRRPAIDLKYITFGFAYLQDLV 631

Query: 141 EQSIIQEHTGRKSTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSIV 200
           EQ+II  HTG  +  G+ LQQFPYPCYI DQFI  ++++FP+FMVLSWV++ +MI K+IV
Sbjct: 632 EQAIISLHTGWTNNTGVYLQQFPYPCYIFDQFIVTIAESFPMFMVLSWVYSFSMIIKTIV 691

Query: 201 YEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL 244
            EK+ RLKE M+VMGL+N V WTAWFI+S + M +++VLL+L+L
Sbjct: 692 REKELRLKEAMKVMGLNNSVLWTAWFINSFLFMFLSSVLLTLIL 735

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443734953|gb|ELU18808.1| hypothetical protein CAPTEDRAFT_226736 [Capitella teleta]

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 91/205 (44%), Positives = 136/205 (66%), Gaps = 5/205 (2%)

Query: 47  CIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTLTYSIRMSTTLIGD 106
           C +F+K  P+       N     + +N LWA + F     + L   + Y IRM T  +  
Sbjct: 495 CFEFDKFEPHKTEEDVVNTGLTYIGDNKLWAGLIFDIDSSENLPTHIKYKIRMDTDRVDS 554

Query: 107 TYIS---DHFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRK--STPGIVLQQ 161
           T  S   D F+T  PR++PL D+KY+ +GF+Y+QDMVE +II+EHTG       G+ +QQ
Sbjct: 555 TSKSRVLDRFWTPGPRAKPLPDMKYVVYGFSYIQDMVEHAIIREHTGDSLDEDIGMTVQQ 614

Query: 162 FPYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVH 221
           FPYPCYI D+F  A+S++ PLFM+LSW++A +++ K+IVYEK++RLKE+M+ MGL+N VH
Sbjct: 615 FPYPCYINDKFTMAISRSLPLFMILSWIYAVSILVKAIVYEKEQRLKEVMKTMGLTNAVH 674

Query: 222 WTAWFIDSIVVMIITAVLLSLLLVI 246
           W AWFI + V+M+++  LL ++L +
Sbjct: 675 WCAWFITAFVMMLLSVFLLLIVLKV 699

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|427784385|gb|JAA57644.1| Putative lipid exporter abca1 [Rhipicephalus pulchellus]

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 98/210 (46%), Positives = 132/210 (62%), Gaps = 5/210 (2%)

Query: 40  EEYKNNKCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFT----QPGYDKLKPTLTY 95
           E Y   +C + ++   Y    +        M  N LWA + F+        + L P + Y
Sbjct: 529 ETYHIFECFEMDRFEGYPSEESLMPRGLQLMRENKLWAALVFSGMKSSQDTEVLPPFIRY 588

Query: 96  SIRMSTTLIGDTY-ISDHFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRKST 154
            IRM    +  T  I D  +   PR RP  DLKY+TFGFAYLQD+VE SII   TG + T
Sbjct: 589 KIRMDARKVDSTKKIEDRIFRPGPRRRPTIDLKYLTFGFAYLQDLVEHSIIALQTGWEKT 648

Query: 155 PGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVM 214
            G+ LQQFPYPCYI DQFI  ++++FP+FMVLSWV++ AM+ KSIV EK+ RLKE+MRVM
Sbjct: 649 TGVYLQQFPYPCYIFDQFIVTIAESFPMFMVLSWVYSFAMLIKSIVREKELRLKEVMRVM 708

Query: 215 GLSNGVHWTAWFIDSIVVMIITAVLLSLLL 244
           GL +GV W +WFID+   M+I+++LL+ +L
Sbjct: 709 GLGSGVLWLSWFIDAFGFMLISSLLLTCIL 738

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|410926975|ref|XP_003976943.1| PREDICTED: ATP-binding cassette sub-family A member 1-like, partial [Takifugu rubripes]

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 90/202 (44%), Positives = 133/202 (65%), Gaps = 3/202 (1%)

Query: 46  KCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQ--PGYDKLKPTLTYSIRMSTTL 103
           +C++ NK+ P     T  N++ + +++   WA I FT       KL P L Y IRM    
Sbjct: 386 ECVNLNKLEPVPSEETMVNESMVLLEDRKFWAGIVFTDVDTNASKLPPQLKYKIRMDIDN 445

Query: 104 IGDT-YISDHFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRKSTPGIVLQQF 162
           +  T  I D ++   PR+ P  D++YI  GF+YLQD+VE  II+  TG K   G+ +QQ 
Sbjct: 446 VERTNKIKDAYWDPGPRADPFEDMRYIWGGFSYLQDLVEHGIIRAMTGTKEKTGVYIQQM 505

Query: 163 PYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHW 222
           PYPCY++D F++ +S++ PLFM L+W+++ A+I KS+VYEK+ RLKE MR+MGL+NG+ W
Sbjct: 506 PYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAIILKSVVYEKEARLKETMRIMGLNNGILW 565

Query: 223 TAWFIDSIVVMIITAVLLSLLL 244
            +WFI S+V ++I+A LL LLL
Sbjct: 566 CSWFISSLVPLLISAGLLVLLL 587

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|427795723|gb|JAA63313.1| hypothetical protein, partial [Rhipicephalus pulchellus]

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 98/210 (46%), Positives = 132/210 (62%), Gaps = 5/210 (2%)

Query: 40  EEYKNNKCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFT----QPGYDKLKPTLTY 95
           E Y   +C + ++   Y    +        M  N LWA + F+        + L P + Y
Sbjct: 126 ETYHIFECFEMDRFEGYPSEESLMPRGLQLMRENKLWAALVFSGMKSSQDTEVLPPFIRY 185

Query: 96  SIRMSTTLIGDTY-ISDHFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRKST 154
            IRM    +  T  I D  +   PR RP  DLKY+TFGFAYLQD+VE SII   TG + T
Sbjct: 186 KIRMDARKVDSTKKIEDRIFRPGPRRRPTIDLKYLTFGFAYLQDLVEHSIIALQTGWEKT 245

Query: 155 PGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVM 214
            G+ LQQFPYPCYI DQFI  ++++FP+FMVLSWV++ AM+ KSIV EK+ RLKE+MRVM
Sbjct: 246 TGVYLQQFPYPCYIFDQFIVTIAESFPMFMVLSWVYSFAMLIKSIVREKELRLKEVMRVM 305

Query: 215 GLSNGVHWTAWFIDSIVVMIITAVLLSLLL 244
           GL +GV W +WFID+   M+I+++LL+ +L
Sbjct: 306 GLGSGVLWLSWFIDAFGFMLISSLLLTCIL 335

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405952754|gb|EKC20528.1| ATP-binding cassette sub-family A member 1 [Crassostrea gigas]

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 97/214 (45%), Positives = 127/214 (59%), Gaps = 27/214 (12%)

Query: 47  CIDFNKIVPYNDSATAENDAFLRMDNNTLWA----------------LINFTQP------ 84
           C + NK V Y +     +D   ++D    WA                L+N  Q       
Sbjct: 601 CFNLNKFVGYKNERQMISDGIKKIDELKFWAGKNTIKIILKFSIENILVNKKQHYALEFQ 660

Query: 85  -GYDKLKPTLT---YSIRMSTTLIGDT-YISDHFYTLDPRSRPLYDLKYITFGFAYLQDM 139
              D L P  T   YSIRM T  I  T  I D ++   PR+ P  D KYIT+GFAY+QDM
Sbjct: 661 LSDDDLTPLPTHIKYSIRMDTAKIDKTTKIQDKYWRPGPRANPGTDTKYITYGFAYIQDM 720

Query: 140 VEQSIIQEHTGRKSTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSI 199
           V+ +II   T ++   G+  QQFPYPCY  D+FI A+S++ PLF+VL+WV + AMICKSI
Sbjct: 721 VDHAIINVQTQKQVEIGVETQQFPYPCYTRDRFIYAISRSLPLFLVLAWVLSVAMICKSI 780

Query: 200 VYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVM 233
           VYEK+ RLKE+M++MGLSNGVHW AWFI++ V+M
Sbjct: 781 VYEKENRLKEVMKIMGLSNGVHWVAWFINAFVMM 814

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|323510624|ref|NP_001108058.2| ATP-binding cassette, sub-family A (ABC1), member 1B [Danio rerio]

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/232 (40%), Positives = 140/232 (60%), Gaps = 5/232 (2%)

Query: 16  TRMEQAFFTVLQFFCGNTSARHTLEEYKNNKCIDFNKIVPYNDSATAENDAFLRMDNNTL 75
           TR +   FT    F     A  ++  +   +C++ +K+ P +      N++   +DN   
Sbjct: 478 TRPQGTAFTWRDVFNETDQAIMSISRFM--ECVNLDKLEPVSTEEKLVNESMSLLDNRKF 535

Query: 76  WALINFTQ--PGYDKLKPTLTYSIRMSTTLIGDT-YISDHFYTLDPRSRPLYDLKYITFG 132
           WA I F        +L P + Y IRM    +  T  I D ++   PR+ P  DL+YI  G
Sbjct: 536 WAGIVFLDIPSNSSELPPNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGG 595

Query: 133 FAYLQDMVEQSIIQEHTGRKSTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFAC 192
           F+YLQD+VE SII+  TG K   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ 
Sbjct: 596 FSYLQDVVEHSIIRAVTGSKEKTGVYIQQMPYPCYVDDIFLRIMSRSMPLFMTLAWMYSV 655

Query: 193 AMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL 244
           A+I K +VYEK+ RLKE MR+MGL NG+ W +WFI S++ ++I+A LL LLL
Sbjct: 656 AIIIKGVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLISAGLLVLLL 707

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348524963|ref|XP_003449992.1| PREDICTED: ATP-binding cassette sub-family A member 1-like [Oreochromis niloticus]

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 130/203 (64%), Gaps = 4/203 (1%)

Query: 46  KCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDK---LKPTLTYSIRMSTT 102
           +C++ +K+ P  +     N +   +DN   WA I F    ++    L P + Y IRM   
Sbjct: 506 ECVNLDKLEPVANEERLVNKSMGLLDNQRFWAGIVFPDIAHNNSTDLPPNVNYKIRMDID 565

Query: 103 LIGDT-YISDHFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRKSTPGIVLQQ 161
            +  T  I D ++   PR+ P  DL+Y+  GF+YLQD++EQ II+  TG K   GI +QQ
Sbjct: 566 NVERTNKIKDGYWDPGPRADPFEDLRYVWGGFSYLQDVIEQGIIRAVTGTKQKTGIYIQQ 625

Query: 162 FPYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVH 221
            PYPCY++D F++ +S++ PLFM L+W+++ A+I K +VYEK+ RLKE MR+MGL+NG  
Sbjct: 626 MPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAIIIKGVVYEKEARLKETMRIMGLNNGTL 685

Query: 222 WTAWFIDSIVVMIITAVLLSLLL 244
           W +WFI S++ ++I+A LL +LL
Sbjct: 686 WLSWFISSLIPLLISAGLLVMLL 708

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432848380|ref|XP_004066316.1| PREDICTED: ATP-binding cassette sub-family A member 1-like [Oryzias latipes]

 Score =  182 bits (463), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 128/203 (63%), Gaps = 4/203 (1%)

Query: 46  KCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINF---TQPGYDKLKPTLTYSIRMSTT 102
           +C++ +K+ P  +     N +   +DN   WA I F          L P + Y IRM   
Sbjct: 507 ECVNLDKLEPVANEERLVNKSMSLLDNQKFWAGIVFPDIVHSDNSDLPPNVNYKIRMDID 566

Query: 103 LIGDT-YISDHFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRKSTPGIVLQQ 161
            +  T  I D ++   PR+ P  DL+Y+  GF+YLQD++EQ II+  TG K   GI +QQ
Sbjct: 567 NVERTNKIKDGYWDPGPRADPFEDLRYVWGGFSYLQDVIEQGIIRAVTGSKEKTGIYIQQ 626

Query: 162 FPYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVH 221
            PYPCY++D F++ +S++ PLFM L+W+++ A+I K +VYEK+ RLKE MR+MGL+NG  
Sbjct: 627 MPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAIIIKGVVYEKEARLKETMRIMGLNNGTL 686

Query: 222 WTAWFIDSIVVMIITAVLLSLLL 244
           W +WFI S++ ++I+A LL +LL
Sbjct: 687 WLSWFISSLIPLLISAGLLVMLL 709

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149738947|ref|XP_001493840.1| PREDICTED: ATP-binding cassette sub-family A member 1 [Equus caballus]

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/202 (42%), Positives = 131/202 (64%), Gaps = 3/202 (1%)

Query: 46  KCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFT--QPGYDKLKPTLTYSIRMSTTL 103
           +C++ NK+ P        N +   +D+   WA I FT   PG   L   + Y IRM    
Sbjct: 503 ECVNLNKLEPIATEVRLINKSMELLDDRKFWAGIVFTGIAPGSVDLPHHVKYKIRMDIDN 562

Query: 104 IGDT-YISDHFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRKSTPGIVLQQF 162
           +  T  I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  TG +   G+ +QQ 
Sbjct: 563 VERTNKIKDAYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVLTGTEKKTGVYVQQM 622

Query: 163 PYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHW 222
           PYPCY++D F++ +S++ PLFM L+W+++ A+I KSIVYEK+ RLKE MR+MGL NG+ W
Sbjct: 623 PYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKSIVYEKEARLKETMRIMGLDNGILW 682

Query: 223 TAWFIDSIVVMIITAVLLSLLL 244
            +WFI S++ ++++A LL ++L
Sbjct: 683 FSWFISSLIPLLVSAGLLVVIL 704

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
ZFIN|ZDB-GENE-030131-9826	2282	abca1b "ATP-binding cassette,	0.919	0.099	0.405	3.2e-42
UNIPROTKB|F1SP55	1293	ABCA1 "Uncharacterized protein	0.910	0.174	0.391	5.1e-41
UNIPROTKB|F1MG24	2261	ABCA1 "Uncharacterized protein	0.890	0.097	0.391	5.9e-41
UNIPROTKB|F1LNL3	2258	Abca1 "Protein Abca1" [Rattus	0.890	0.097	0.395	9.6e-41
UNIPROTKB|F1LRX9	2258	Abca1 "Protein Abca1" [Rattus	0.890	0.097	0.395	9.6e-41
MGI|MGI:99607	2261	Abca1 "ATP-binding cassette, s	0.890	0.097	0.391	1.6e-40
UNIPROTKB|E1C619	2225	E1C619 "Uncharacterized protei	0.898	0.099	0.378	2e-40
UNIPROTKB|E1C2W8	2255	E1C2W8 "Uncharacterized protei	0.898	0.098	0.378	2e-40
ZFIN|ZDB-GENE-031006-12	2268	abca1a "ATP-binding cassette,	0.919	0.100	0.383	2e-40
UNIPROTKB|O95477	2261	ABCA1 "ATP-binding cassette su	0.890	0.097	0.391	2.6e-40

ZFIN|ZDB-GENE-030131-9826 abca1b "ATP-binding cassette, sub-family A (ABC1), member 1B" [Danio rerio (taxid:7955)]

 Score = 463 (168.0 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 94/232 (40%), Positives = 141/232 (60%)

Query:    16 TRMEQAFFTVLQFFCGNTSARHTLEEYKNNKCIDFNKIVPYNDSATAENDAFLRMDNNTL 75
             TR +   FT    F     A  ++  +   +C++ +K+ P +      N++   +DN   
Sbjct:   478 TRPQGTAFTWRDVFNETDQAIMSISRFM--ECVNLDKLEPVSTEEKLVNESMSLLDNRKF 535

Query:    76 WALINFTQ-PGYD-KLKPTLTYSIRMSTTLIGDTY-ISDHFYTLDPRSRPLYDLKYITFG 132
             WA I F   P    +L P + Y IRM    +  T  I D ++   PR+ P  DL+YI  G
Sbjct:   536 WAGIVFLDIPSNSSELPPNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGG 595

Query:   133 FAYLQDMVEQSIIQEHTGRKSTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFAC 192
             F+YLQD+VE SII+  TG K   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ 
Sbjct:   596 FSYLQDVVEHSIIRAVTGSKEKTGVYIQQMPYPCYVDDIFLRIMSRSMPLFMTLAWMYSV 655

Query:   193 AMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL 244
             A+I K +VYEK+ RLKE MR+MGL NG+ W +WFI S++ ++I+A LL LLL
Sbjct:   656 AIIIKGVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLISAGLLVLLL 707

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1SP55 ABCA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 448 (162.8 bits), Expect = 5.1e-41, P = 5.1e-41
 Identities = 90/230 (39%), Positives = 139/230 (60%)

Query:    18 MEQAFFTVLQFFCGNTSARHTLEEYKNNKCIDFNKIVPYNDSATAENDAFLRMDNNTLWA 77
             M  + +T  + F     A  T+  +   +C++ NKI P    A   N +   +D    WA
Sbjct:   480 MNGSTYTWREAFNETNQAVQTISRFM--ECVNLNKIEPVATEARLINKSMELLDERKFWA 537

Query:    78 LINFT--QPGYDKLKPTLTYSIRMSTTLIGDTY-ISDHFYTLDPRSRPLYDLKYITFGFA 134
              I F    PG  +L   + Y IRM    +  T  I D ++   PR+ P  D++Y+  GF 
Sbjct:   538 GIVFPGITPGSVELPHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFT 597

Query:   135 YLQDMVEQSIIQEHTGRKSTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACAM 194
             YLQD+VEQ+II+  TG +   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ A+
Sbjct:   598 YLQDVVEQAIIRVLTGVEKKTGVYMQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAV 657

Query:   195 ICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL 244
             I K IVYEK+ RLKE MR+MGL NG+ W +WFI S++ ++++A LL ++L
Sbjct:   658 IIKGIVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLVSAGLLVVIL 707

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|F1MG24 ABCA1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 451 (163.8 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 88/225 (39%), Positives = 138/225 (61%)

Query:    23 FTVLQFFCGNTSARHTLEEYKNNKCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFT 82
             +T  + F     A  T+  +   +C++ NK+ P        N +   +D    WA + FT
Sbjct:   482 YTWREAFNETNQAIQTISRFM--ECVNLNKLEPVATEVLLINKSMELLDERKFWAGVVFT 539

Query:    83 --QPGYDKLKPTLTYSIRMSTTLIGDTY-ISDHFYTLDPRSRPLYDLKYITFGFAYLQDM 139
                PG  +L   + Y IRM    +  T  I D ++   PR+ P  D++Y+  GFAYLQD+
Sbjct:   540 GIAPGSVELPHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDV 599

Query:   140 VEQSIIQEHTGRKSTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSI 199
             VEQ+II+  TG +   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ A+I K I
Sbjct:   600 VEQAIIRVLTGTEKKTGVYMQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGI 659

Query:   200 VYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL 244
             VYEK+ RLKE MR+MGL NG+ W +WFI S++ ++++A LL ++L
Sbjct:   660 VYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLVSAGLLVVIL 704

GO:0071300 "cellular response to retinoic acid" evidence=IEA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0060155 "platelet dense granule organization" evidence=IEA

GO:0055098 "response to low-density lipoprotein particle stimulus" evidence=IEA

GO:0055091 "phospholipid homeostasis" evidence=IEA

GO:0050702 "interleukin-1 beta secretion" evidence=IEA

GO:0045335 "phagocytic vesicle" evidence=IEA

GO:0045332 "phospholipid translocation" evidence=IEA

GO:0045121 "membrane raft" evidence=IEA

GO:0043691 "reverse cholesterol transport" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IEA

GO:0034616 "response to laminar fluid shear stress" evidence=IEA

GO:0034380 "high-density lipoprotein particle assembly" evidence=IEA

GO:0034188 "apolipoprotein A-I receptor activity" evidence=IEA

GO:0034186 "apolipoprotein A-I binding" evidence=IEA

GO:0033700 "phospholipid efflux" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IEA

GO:0032489 "regulation of Cdc42 protein signal transduction" evidence=IEA

GO:0032367 "intracellular cholesterol transport" evidence=IEA

GO:0031267 "small GTPase binding" evidence=IEA

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=IEA

GO:0016197 "endosomal transport" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0008509 "anion transmembrane transporter activity" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007040 "lysosome organization" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IEA

GO:0006497 "protein lipidation" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005548 "phospholipid transporter activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0002790 "peptide secretion" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|F1LNL3 Abca1 "Protein Abca1" [Rattus norvegicus (taxid:10116)]

 Score = 449 (163.1 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 89/225 (39%), Positives = 138/225 (61%)

Query:    23 FTVLQFFCGNTSARHTLEEYKNNKCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFT 82
             +T  + F     A  T+  +   +C++ NK+ P        N +   +D    WA I FT
Sbjct:   482 YTWREAFNETNQAIQTISRFM--ECVNLNKLEPIPTEVRLINKSMELLDERKFWAGIVFT 539

Query:    83 --QPGYDKLKPTLTYSIRMSTTLIGDTY-ISDHFYTLDPRSRPLYDLKYITFGFAYLQDM 139
                P   +L   + Y IRM    +  T  I D ++   PR+ P  D++Y+  GFAYLQD+
Sbjct:   540 GITPDSVELPHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDV 599

Query:   140 VEQSIIQEHTGRKSTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSI 199
             VEQ+II+  TG +   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ A+I KSI
Sbjct:   600 VEQAIIRVLTGTEKKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKSI 659

Query:   200 VYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL 244
             VYEK+ RLKE MR+MGL NG+ W +WFI S++ ++++A LL ++L
Sbjct:   660 VYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLVSAGLLVIIL 704

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|F1LRX9 Abca1 "Protein Abca1" [Rattus norvegicus (taxid:10116)]

 Score = 449 (163.1 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 89/225 (39%), Positives = 138/225 (61%)

Query:    23 FTVLQFFCGNTSARHTLEEYKNNKCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFT 82
             +T  + F     A  T+  +   +C++ NK+ P        N +   +D    WA I FT
Sbjct:   482 YTWREAFNETNQAIQTISRFM--ECVNLNKLEPIPTEVRLINKSMELLDERKFWAGIVFT 539

Query:    83 --QPGYDKLKPTLTYSIRMSTTLIGDTY-ISDHFYTLDPRSRPLYDLKYITFGFAYLQDM 139
                P   +L   + Y IRM    +  T  I D ++   PR+ P  D++Y+  GFAYLQD+
Sbjct:   540 GITPDSVELPHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDV 599

Query:   140 VEQSIIQEHTGRKSTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSI 199
             VEQ+II+  TG +   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ A+I KSI
Sbjct:   600 VEQAIIRVLTGTEKKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKSI 659

Query:   200 VYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL 244
             VYEK+ RLKE MR+MGL NG+ W +WFI S++ ++++A LL ++L
Sbjct:   660 VYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLVSAGLLVIIL 704

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

MGI|MGI:99607 Abca1 "ATP-binding cassette, sub-family A (ABC1), member 1" [Mus musculus (taxid:10090)]

 Score = 447 (162.4 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 88/225 (39%), Positives = 138/225 (61%)

Query:    23 FTVLQFFCGNTSARHTLEEYKNNKCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFT 82
             +T  + F     A  T+  +   +C++ NK+ P        N +   +D    WA I FT
Sbjct:   482 YTWREAFNETNQAIQTISRFM--ECVNLNKLEPIPTEVRLINKSMELLDERKFWAGIVFT 539

Query:    83 --QPGYDKLKPTLTYSIRMSTTLIGDTY-ISDHFYTLDPRSRPLYDLKYITFGFAYLQDM 139
                P   +L   + Y IRM    +  T  I D ++   PR+ P  D++Y+  GFAYLQD+
Sbjct:   540 GITPDSVELPHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDV 599

Query:   140 VEQSIIQEHTGRKSTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSI 199
             VEQ+II+  TG +   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ A+I KSI
Sbjct:   600 VEQAIIRVLTGSEKKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKSI 659

Query:   200 VYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL 244
             VYEK+ RLKE MR+MGL NG+ W +WF+ S++ ++++A LL ++L
Sbjct:   660 VYEKEARLKETMRIMGLDNGILWFSWFVSSLIPLLVSAGLLVVIL 704

GO:0000166 "nucleotide binding" evidence=IEA

GO:0002790 "peptide secretion" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=ISO

GO:0005548 "phospholipid transporter activity" evidence=ISO;IMP;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISO;IDA

GO:0006497 "protein lipidation" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0007040 "lysosome organization" evidence=ISO

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO

GO:0008203 "cholesterol metabolic process" evidence=ISO;IDA

GO:0008509 "anion transmembrane transporter activity" evidence=IDA

GO:0009986 "cell surface" evidence=ISO

GO:0010875 "positive regulation of cholesterol efflux" evidence=IMP

GO:0015914 "phospholipid transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016197 "endosomal transport" evidence=ISO

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=ISO;IMP;IDA

GO:0019905 "syntaxin binding" evidence=ISO

GO:0030139 "endocytic vesicle" evidence=ISO

GO:0030301 "cholesterol transport" evidence=ISO

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=ISO

GO:0031267 "small GTPase binding" evidence=ISO

GO:0032367 "intracellular cholesterol transport" evidence=ISO

GO:0032489 "regulation of Cdc42 protein signal transduction" evidence=ISO

GO:0033344 "cholesterol efflux" evidence=ISO;IDA;IMP

GO:0033700 "phospholipid efflux" evidence=ISO;IMP;IDA

GO:0034185 "apolipoprotein binding" evidence=ISO

GO:0034186 "apolipoprotein A-I binding" evidence=ISO

GO:0034188 "apolipoprotein A-I receptor activity" evidence=ISO

GO:0034364 "high-density lipoprotein particle" evidence=ISO

GO:0034380 "high-density lipoprotein particle assembly" evidence=ISO

GO:0038027 "apolipoprotein A-I-mediated signaling pathway" evidence=ISO

GO:0042157 "lipoprotein metabolic process" evidence=IMP

GO:0042158 "lipoprotein biosynthetic process" evidence=ISO;IMP

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISO

GO:0042632 "cholesterol homeostasis" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0043691 "reverse cholesterol transport" evidence=ISO;IMP

GO:0045121 "membrane raft" evidence=ISO

GO:0045332 "phospholipid translocation" evidence=IMP

GO:0045335 "phagocytic vesicle" evidence=ISO

GO:0050702 "interleukin-1 beta secretion" evidence=ISO

GO:0055091 "phospholipid homeostasis" evidence=ISO

GO:0055099 "response to high density lipoprotein particle stimulus" evidence=IMP

GO:0060155 "platelet dense granule organization" evidence=ISO

GO:0071222 "cellular response to lipopolysaccharide" evidence=IDA

GO:0071300 "cellular response to retinoic acid" evidence=IDA

UNIPROTKB|E1C619 E1C619 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 446 (162.1 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 86/227 (37%), Positives = 138/227 (60%)

Query:    23 FTVLQFFCGNTSARHTLEEYKNNKCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFT 82
             +T +  F     A  T+  +   +C++ +K+ P        N +   +D    WA + FT
Sbjct:   485 YTWVDAFNETDRAIQTISRFM--ECVNLDKLEPVATEVRLINKSLELLDERRFWAGVVFT 542

Query:    83 Q--PGYDKLKPTLTYSIRMSTTLIGDTY-ISDHFYTLDPRSRPLYDLKYITFGFAYLQDM 139
             +  P   +L   + Y IRM    +  T  I D ++   PR+ P  D++Y+  GF YLQD+
Sbjct:   543 EIAPNSTELPQHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFTYLQDV 602

Query:   140 VEQSIIQEHTGRKSTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSI 199
             VEQ+II+  TG +   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ A+I K I
Sbjct:   603 VEQAIIRVQTGTEKKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGI 662

Query:   200 VYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVI 246
             VYEK+ RLKE MR+MGL NG+ W +WFI S++ ++++A LL L+L +
Sbjct:   663 VYEKEARLKETMRIMGLDNGILWLSWFISSLIPLLMSAGLLVLILKV 709

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E1C2W8 E1C2W8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 446 (162.1 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 86/227 (37%), Positives = 138/227 (60%)

Query:    23 FTVLQFFCGNTSARHTLEEYKNNKCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFT 82
             +T +  F     A  T+  +   +C++ +K+ P        N +   +D    WA + FT
Sbjct:   485 YTWVDAFNETDRAIQTISRFM--ECVNLDKLEPVATEVRLINKSLELLDERRFWAGVVFT 542

Query:    83 Q--PGYDKLKPTLTYSIRMSTTLIGDTY-ISDHFYTLDPRSRPLYDLKYITFGFAYLQDM 139
             +  P   +L   + Y IRM    +  T  I D ++   PR+ P  D++Y+  GF YLQD+
Sbjct:   543 EIAPNSTELPQHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFTYLQDV 602

Query:   140 VEQSIIQEHTGRKSTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSI 199
             VEQ+II+  TG +   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ A+I K I
Sbjct:   603 VEQAIIRVQTGTEKKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGI 662

Query:   200 VYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVI 246
             VYEK+ RLKE MR+MGL NG+ W +WFI S++ ++++A LL L+L +
Sbjct:   663 VYEKEARLKETMRIMGLDNGILWLSWFISSLIPLLMSAGLLVLILKV 709

GO:0016887 "ATPase activity" evidence=IEA

GO:0002790 "peptide secretion" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005548 "phospholipid transporter activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006497 "protein lipidation" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IEA

GO:0007040 "lysosome organization" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0008509 "anion transmembrane transporter activity" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0016197 "endosomal transport" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=IEA

GO:0031267 "small GTPase binding" evidence=IEA

GO:0032367 "intracellular cholesterol transport" evidence=IEA

GO:0032489 "regulation of Cdc42 protein signal transduction" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IEA

GO:0033700 "phospholipid efflux" evidence=IEA

GO:0034186 "apolipoprotein A-I binding" evidence=IEA

GO:0034188 "apolipoprotein A-I receptor activity" evidence=IEA

GO:0034380 "high-density lipoprotein particle assembly" evidence=IEA

GO:0034616 "response to laminar fluid shear stress" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IEA

GO:0043691 "reverse cholesterol transport" evidence=IEA

GO:0045121 "membrane raft" evidence=IEA

GO:0045332 "phospholipid translocation" evidence=IEA

GO:0045335 "phagocytic vesicle" evidence=IEA

GO:0050702 "interleukin-1 beta secretion" evidence=IEA

GO:0055091 "phospholipid homeostasis" evidence=IEA

GO:0055098 "response to low-density lipoprotein particle stimulus" evidence=IEA

GO:0060155 "platelet dense granule organization" evidence=IEA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0071300 "cellular response to retinoic acid" evidence=IEA

ZFIN|ZDB-GENE-031006-12 abca1a "ATP-binding cassette, sub-family A (ABC1), member 1A" [Danio rerio (taxid:7955)]

 Score = 446 (162.1 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 89/232 (38%), Positives = 136/232 (58%)

Query:    16 TRMEQAFFTVLQFFCGNTSARHTLEEYKNNKCIDFNKIVPYNDSATAENDAFLRMDNNTL 75
             TR     +T  + F     A  T+  +   +C++ +K+ P  +     N +   +D+   
Sbjct:   479 TRPHGTAYTWREVFNETDQAIQTISRFM--ECVNLDKLEPVANEERLVNKSMRLLDDRKF 536

Query:    76 WALINFT--QPGYDKLKPTLTYSIRMSTTLIGDTY-ISDHFYTLDPRSRPLYDLKYITFG 132
             WA I F   Q     L   + Y IRM    +  T  I D ++   PR+ P  DL+YI  G
Sbjct:   537 WAGIVFPDMQSNTSDLPLNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGG 596

Query:   133 FAYLQDMVEQSIIQEHTGRKSTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFAC 192
             F YLQD++E  II+  TG K   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ 
Sbjct:   597 FTYLQDVIEHGIIRALTGSKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSV 656

Query:   193 AMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL 244
             A+I K +VYEK+ RLKE MR+MGL NG+ W +WFI S++ ++I+A LL L+L
Sbjct:   657 AIIIKGVVYEKEARLKETMRIMGLDNGILWLSWFISSLIPLLISAALLVLIL 708

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|O95477 ABCA1 "ATP-binding cassette sub-family A member 1" [Homo sapiens (taxid:9606)]

 Score = 445 (161.7 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 88/225 (39%), Positives = 137/225 (60%)

Query:    23 FTVLQFFCGNTSARHTLEEYKNNKCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFT 82
             +T  + F     A  T+  +   +C++ NK+ P        N +   +D    WA I FT
Sbjct:   482 YTWREAFNETNQAIRTISRFM--ECVNLNKLEPIATEVWLINKSMELLDERKFWAGIVFT 539

Query:    83 --QPGYDKLKPTLTYSIRMSTTLIGDTY-ISDHFYTLDPRSRPLYDLKYITFGFAYLQDM 139
                PG  +L   + Y IRM    +  T  I D ++   PR+ P  D++Y+  GFAYLQD+
Sbjct:   540 GITPGSIELPHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDV 599

Query:   140 VEQSIIQEHTGRKSTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSI 199
             VEQ+II+  TG +   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ A+I K I
Sbjct:   600 VEQAIIRVLTGTEKKTGVYMQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGI 659

Query:   200 VYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL 244
             VYEK+ RLKE MR+MGL N + W +WFI S++ ++++A LL ++L
Sbjct:   660 VYEKEARLKETMRIMGLDNSILWFSWFISSLIPLLVSAGLLVVIL 704

GO:0016887 "ATPase activity" evidence=IEA

GO:0002790 "peptide secretion" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006497 "protein lipidation" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0045332 "phospholipid translocation" evidence=IEA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0071300 "cellular response to retinoic acid" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0006629 "lipid metabolic process" evidence=TAS

GO:0042157 "lipoprotein metabolic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010745 "negative regulation of macrophage derived foam cell differentiation" evidence=TAS

GO:0010887 "negative regulation of cholesterol storage" evidence=TAS

GO:0034188 "apolipoprotein A-I receptor activity" evidence=IDA

GO:0042632 "cholesterol homeostasis" evidence=IDA

GO:0008203 "cholesterol metabolic process" evidence=IDA

GO:0033700 "phospholipid efflux" evidence=IDA;IMP

GO:0055091 "phospholipid homeostasis" evidence=IMP

GO:0015485 "cholesterol binding" evidence=IC

GO:0005548 "phospholipid transporter activity" evidence=IDA

GO:0005543 "phospholipid binding" evidence=IC

GO:0043691 "reverse cholesterol transport" evidence=IMP

GO:0019905 "syntaxin binding" evidence=IPI

GO:0045121 "membrane raft" evidence=IDA

GO:0008509 "anion transmembrane transporter activity" evidence=ISS

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=IMP

GO:0005524 "ATP binding" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0016197 "endosomal transport" evidence=IDA

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0007040 "lysosome organization" evidence=IDA

GO:0032367 "intracellular cholesterol transport" evidence=IMP

GO:0033344 "cholesterol efflux" evidence=IMP;IDA

GO:0017127 "cholesterol transporter activity" evidence=IDA

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0060155 "platelet dense granule organization" evidence=IMP

GO:0050702 "interleukin-1 beta secretion" evidence=IMP

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IMP

GO:0032489 "regulation of Cdc42 protein signal transduction" evidence=IMP

GO:0034186 "apolipoprotein A-I binding" evidence=IPI

GO:0031267 "small GTPase binding" evidence=IPI

GO:0034185 "apolipoprotein binding" evidence=IPI

GO:0055098 "response to low-density lipoprotein particle stimulus" evidence=IEP

GO:0034616 "response to laminar fluid shear stress" evidence=IEP

GO:0034380 "high-density lipoprotein particle assembly" evidence=IMP

GO:0038027 "apolipoprotein A-I-mediated signaling pathway" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	247
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	1e-47
pfam12698	278	pfam12698, ABC2_membrane_3, ABC-2 family transport	1e-05

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score =  168 bits (427), Expect = 1e-47
 Identities = 78/203 (38%), Positives = 120/203 (59%), Gaps = 3/203 (1%)

Query: 46  KCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINF--TQPGYDKLKPTLTYSIRMSTTL 103
           +C+  +K   Y+D       A   ++ N  WA + F    P    L P + Y IRM   +
Sbjct: 518 ECLVLDKFESYDDEVQLTQRALSLLEENRFWAGVVFPDMYPWTSSLPPHVKYKIRMDIDV 577

Query: 104 IGDT-YISDHFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRKSTPGIVLQQF 162
           +  T  I D ++   PR+ P+ D +YI  GFAYLQDMVEQ I +     +   GI LQQ 
Sbjct: 578 VEKTNKIKDRYWDSGPRADPVEDFRYIWGGFAYLQDMVEQGITRSQMQAEPPVGIYLQQM 637

Query: 163 PYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHW 222
           PYPC+++D F+  +++ FP+FMVL+W+++ +M  KSIV EK+ RLKE ++  G+SN V W
Sbjct: 638 PYPCFVDDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVIW 697

Query: 223 TAWFIDSIVVMIITAVLLSLLLV 245
             WF+DS  +M ++  LL++ ++
Sbjct: 698 CTWFLDSFSIMSMSIFLLTIFIM 720

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 19/66 (28%), Positives = 34/66 (51%)

Query: 180 FPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVL 239
             L + L  +    +I  SIV EK+ R+KE + V G+S   +     +  ++V +I  ++
Sbjct: 98  LGLLLFLLILIGALIIALSIVEEKESRIKERLLVSGVSPLKYLLGKILGDLLVGLIQLLI 157

Query: 240 LSLLLV 245
           + LLL 
Sbjct: 158 ILLLLF 163

This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	247
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
PF12698	344	ABC2_membrane_3: ABC-2 family transporter protein;	98.76
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	98.49
KOG0059|consensus	885		98.23
COG1668	407	NatB ABC-type Na+ efflux pump, permease component	92.94
TIGR00025	232	Mtu_efflux ABC transporter efflux protein, DrrB fa	89.81
TIGR01248	152	drrC daunorubicin resistance protein C. The model	89.79
TIGR01247	236	drrB daunorubicin resistance ABC transporter membr	89.03
TIGR03518	240	ABC_perm_GldF gliding motility-associated ABC tran	88.93
COG0842	286	ABC-type multidrug transport system, permease comp	82.07
PF11298	73	DUF3099: Protein of unknown function (DUF3099); In	81.71
TIGR03861	253	phenyl_ABC_PedC alcohol ABC transporter, permease	81.57

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=2.2e-44  Score=376.92  Aligned_cols=227  Identities=35%  Similarity=0.691  Sum_probs=206.7

Q ss_pred             ccCCcceEEEEeecchHHHHHHhhhhcccccccCceeecCCHHHHHHHHHhhcCCCceEEEEEEcCCC--CCCCCCeeeE
Q psy7370          18 MEQAFFTVLQFFCGNTSARHTLEEYKNNKCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPG--YDKLKPTLTY   95 (247)
Q Consensus        18 ~~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~~~f~se~~m~~~~~~~~~~~~~~agVvF~~~~--~~~~p~~~~Y   95 (247)
                      ++....+|+.+|.-++.+.+.+.++  ++|+.+|++++++||++|++.+.++.+.+.+||||+|+++.  ..++|++++|
T Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~c~~~d~~~~~~~~~~~~~~~~~l~~~~~~~agI~F~~~~~~~~~~p~~v~y  569 (2272)
T TIGR01257       492 DDMTNFDWRDIFNITDRFLRLANQY--LECLVLDKFESYDDEVQLTQRALSLLEENRFWAGVVFPDMYPWTSSLPPHVKY  569 (2272)
T ss_pred             CCCccccHHHHHHHHHHHHHHHHHH--HHHeeccceecCCCHHHHHHHHHHHhhcCCeEEEEEeCCCcccccCCCCceEE
Confidence            4446788999999889999999999  99999999999999999999999998888899999997752  3468999999


Q ss_pred             EEecCCCCCCc-cccccCCCCCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHhhCCCCCcceeeeecCCCcccchhHHH
Q psy7370          96 SIRMSTTLIGD-TYISDHFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRKSTPGIVLQQFPYPCYIEDQFIK  174 (247)
Q Consensus        96 ~IR~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~Y~~~GFl~LQ~~Id~aii~~~~~~~~~~~v~~~~fP~p~~~~d~~~~  174 (247)
                      +||||.+..++ +++.+.+|.+||+.++..|++|+++||++||++|++||++..++....+++++|+||||+|.+|.|..
T Consensus       570 ~IR~~~~~~~~t~~~~~~~w~~g~~~~~~~~~~Y~~~GFl~lQ~ai~~aii~~~~~~~~~~~v~~q~~P~P~y~~d~~l~  649 (2272)
T TIGR01257       570 KIRMDIDVVEKTNKIKDRYWDSGPRADPVEDFRYIWGGFAYLQDMVEQGITRSQMQAEPPVGIYLQQMPYPCFVDDSFMI  649 (2272)
T ss_pred             EEecCccccCcchhhccccccCCCCCCccccccHHHhhHHHHHHHHHHHHHHhhcCCCcccceeeeeCCCCCeeccHHHH
Confidence            99999987766 34567789999998877778999999999999999999999887555788999999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy7370         175 AVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVI  246 (247)
Q Consensus       175 ~~~~~~~l~~~l~~~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~~~il~~  246 (247)
                      .++.++|++++++|++++..+++.||.|||+|+||+||||||++|+||+|||+.++++.++++++++++++.
T Consensus       650 ~~~~~~pl~~~la~~~~~~~lv~~iV~EKE~rlKE~MkiMGL~~~~~w~sWfi~~~~~~~i~~~l~~~il~~  721 (2272)
T TIGR01257       650 ILNRCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIMH  721 (2272)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999998887753

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A

Probab=98.76  E-value=9.8e-09  Score=90.49  Aligned_cols=185  Identities=15%  Similarity=0.205  Sum_probs=49.7

Q ss_pred             cceEEEEeecc--hHHHHHHhhhhcccccccCceeecCCHHHHHHHHHhhcCCCceEEEEEEcCCCCCCC---CCeeeEE
Q psy7370          22 FFTVLQFFCGN--TSARHTLEEYKNNKCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKL---KPTLTYS   96 (247)
Q Consensus        22 ~~~~~~~y~~~--~~~~~~i~~~~~~~~~~~~~~~~f~se~~m~~~~~~~~~~~~~~agVvF~~~~~~~~---p~~~~Y~   96 (247)
                      ..+.+++....  +...+.+.+.  ++.....+...++|++++++.+.+    ++.-+++++++....+.   .+.-+++
T Consensus        29 ~~~~~v~vv~~~~~~~~~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~i~~~~~~~~~~~~~~~~~~  102 (344)
T PF12698_consen   29 PSPIPVAVVDEDNSSLSKQLVQM--LSNSPNFDVVEYDSEEEAKDALKN----GKIDAIIVIPKNFSQDLLSSGESPNIT  102 (344)
T ss_dssp             ---EEEEEEETT-SHHHCCCHHH--HCTSSCCEEEECS-HHHHHHHHHH----HT-SEEEEE-TTCCCHCH-TT--ECCE
T ss_pred             CCCCeEEEEeCCCChHHHHHHHH--HhcCCCcceeeeCCHHHHHHHHHh----CCCcEEEEcCccccccccccCCcceEE
Confidence            44455665532  2444445554  322111125699999999988764    23457888866532110   0111111


Q ss_pred             EecCCCCCCccccccCCCCCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHhhCCC--------CCcceeeeecCCCccc
Q psy7370          97 IRMSTTLIGDTYISDHFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRK--------STPGIVLQQFPYPCYI  168 (247)
Q Consensus        97 IR~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Y~~~GFl~LQ~~Id~aii~~~~~~~--------~~~~v~~~~fP~p~~~  168 (247)
                      +..+.                      .+    ....-.+|+.+++ +.+...+..        ....+..+..|.....
T Consensus       103 ~~~~~----------------------~~----~~~~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (344)
T PF12698_consen  103 VYINS----------------------SN----PHSSQIIQNALSS-LLQQLNASSEGKSAIQSSNSPIPVESIPLSNPS  155 (344)
T ss_dssp             EEESS----------------------SS----HHHHHHHHHHHHH-HHHHHHHCCCGCCCCHHHT--EEEEEEEECCCH
T ss_pred             EEeec----------------------cc----chhhhhhhccccc-cchhhhhhhhhhhhhcccccccccccccccccc
Confidence            11111                      01    0111566777777 655443211        1233444444432221


Q ss_pred             chhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7370         169 EDQFIKAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLL  243 (247)
Q Consensus       169 ~d~~~~~~~~~~~l~~~l~~~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~~~i  243 (247)
                          ......+.++++.+.++..+......++.|||+|++|.|+++|++.+.+|++|++..+++.++.++++.++
T Consensus       156 ----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ek~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~i  226 (344)
T PF12698_consen  156 ----SSFASYLIPFILFFILLIGFSFIAMSIVEEKESGTRERLLSSGVSPWSYWLSKFLAYFLVSLIQSLIIIII  226 (344)
T ss_dssp             ----HHCHTT-----------------------------------------------------------------
T ss_pred             ----ccccccccccchhHHHHHHHHhhchhhhhHhhhhhhHhhhcccCCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                22333455666666666666667889999999999999999999999999999999999999988777664

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=98.49  E-value=5.8e-07  Score=97.01  Aligned_cols=112  Identities=13%  Similarity=0.223  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHhhCCCC-----CcceeeeecCCCcccchhH---HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7370         134 AYLQDMVEQSIIQEHTGRKS-----TPGIVLQQFPYPCYIEDQF---IKAVSKTFPLFMVLSWVFACAMICKSIVYEKQE  205 (247)
Q Consensus       134 l~LQ~~Id~aii~~~~~~~~-----~~~v~~~~fP~p~~~~d~~---~~~~~~~~~l~~~l~~~~~~~~~v~~IV~EKE~  205 (247)
                      -..-+.+++|+++...+...     .+.+...++|.+.......   .......+++++++++.+....++..+|.|||.
T Consensus      1628 p~~lN~l~NaiLr~~~~~~~~~~~~~I~v~N~Plp~t~~~~~~~~~~~~~~~~~iai~ii~~~sfi~asfv~~~V~ER~s 1707 (2272)
T TIGR01257      1628 VSFLNVAHNAILRASLPKDRDPEEYGITVISQPLNLTKEQLSEITVLTTSVDAVVAICVIFAMSFVPASFVLYLIQERVN 1707 (2272)
T ss_pred             HHHHHHHHHHHHHHhcccccCCccceEEEEecCCCCchhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHheeeehHHhh
Confidence            45569999999998654321     3444555666554332111   112234567888889999999999999999999


Q ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7370         206 RLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLV  245 (247)
Q Consensus       206 ~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~~~il~  245 (247)
                      |.|..+.++|++..+||+|.|++.++.++++++++++++.
T Consensus      1708 kaK~lQ~vSGv~~~~YWls~fl~D~~~y~i~~~~~i~i~~ 1747 (2272)
T TIGR01257      1708 KAKHLQFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGIFI 1747 (2272)
T ss_pred             hHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998888876653

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>KOG0059|consensus

Probab=98.23  E-value=1.5e-05  Score=80.92  Aligned_cols=109  Identities=13%  Similarity=0.296  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCcceeeeecCCCcccchhHHHH-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7370         133 FAYLQDMVEQSIIQEHTGRKSTPGIVLQQFPYPCYIEDQFIKA-VSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMM  211 (247)
Q Consensus       133 Fl~LQ~~Id~aii~~~~~~~~~~~v~~~~fP~p~~~~d~~~~~-~~~~~~l~~~l~~~~~~~~~v~~IV~EKE~~lke~m  211 (247)
                      +-.+....++++.+...+..  +.+...++|+......  ... .....++++.+.+++.+..++...+.||+.|.|..|
T Consensus       256 ~~~~~~~~~n~l~~~~~~~~--i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~li~e~~~~~~~~~  331 (885)
T KOG0059|consen  256 LPFLLGLGSNALRRALNLSG--ISVLNEPMPLSGAQLS--LDLLADLLGALFLLFVFLLLFSVFLLSLILERQQRLRHQQ  331 (885)
T ss_pred             HHHhcchHHHHHHHhhcccc--ceeeecCcCccHhhhh--hhhhhHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHH
Confidence            35558888888887765433  3333335554443322  222 345678888899999999999999999999999999


Q ss_pred             HHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7370         212 RVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLV  245 (247)
Q Consensus       212 ~mMGL~~~~~wlsWfl~~~~~~~i~~il~~~il~  245 (247)
                      +++|+++++||++|+++.++.+++.++++.++..
T Consensus       332 ~i~G~~~~~yw~~~~~~d~~~~~l~~~~~~~~~~  365 (885)
T KOG0059|consen  332 LIAGLSPSTYWLFALVWDLLLYLLILLILLIFVL  365 (885)
T ss_pred             HHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999998887666543

>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=92.94  E-value=0.66  Score=43.29  Aligned_cols=61  Identities=18%  Similarity=0.201  Sum_probs=46.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Q psy7370         179 TFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVL  239 (247)
Q Consensus       179 ~~~l~~~l~~~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il  239 (247)
                      +.++++++.+++........++.|||+|.-|.+..+.++..-+-.+=.+-..++.++...+
T Consensus       190 ~~~ll~~~~~~~~~~~~~~sva~EKe~rtlE~LLssPvSr~~ii~gKil~~~~v~l~~~~~  250 (407)
T COG1668         190 LIFLLFFIPLSYAGQMVADSVAGEKERRTLEVLLSSPVSRSEIVFGKILGAALVGLTQIAL  250 (407)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhccCcChhhhhHHHHHHHHHHHHHHHHH
Confidence            4455555555666668999999999999999999999999888777776666666555333

>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family

Probab=89.81  E-value=2.9  Score=35.38  Aligned_cols=59  Identities=5%  Similarity=-0.044  Sum_probs=45.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q psy7370         179 TFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITA  237 (247)
Q Consensus       179 ~~~l~~~l~~~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~  237 (247)
                      ..|.+.+...+.........++.|||++.-+-++.+.++.+.+-++-.+...+..++.+
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~i~~er~~G~l~rl~~~P~~~~~~l~g~~~~~~~~~~~~~   97 (232)
T TIGR00025        39 IPVLMALAAISTAFTGQAIAVARDRRYGALKRLGATPLPRLGILAGRSLAVVARVFLQT   97 (232)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            33454555556666777888999999999999999999999999988666555554443

This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.

>TIGR01248 drrC daunorubicin resistance protein C

Probab=89.79  E-value=2.4  Score=33.74  Aligned_cols=50  Identities=14%  Similarity=0.199  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7370         194 MICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLL  243 (247)
Q Consensus       194 ~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~~~i  243 (247)
                      .....++.|||++.-|.++..-++.+.+.++-.+.+.+..++.++++.++
T Consensus         7 ~~~~~i~~dr~~G~~~~l~~tP~~~~~~~~g~~l~~~~~~~~~~~ii~~v   56 (152)
T TIGR01248         7 FNAIDITIDREIGLLSRLWVLPIHRASALLARIIAETIRAFIGTILILAI   56 (152)
T ss_pred             HHHHHHHHHHHhHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556899999999999999999999999999988888777766555443

The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.

>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein

Probab=89.03  E-value=3.9  Score=34.60  Aligned_cols=64  Identities=13%  Similarity=0.128  Sum_probs=45.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7370         180 FPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLL  243 (247)
Q Consensus       180 ~~l~~~l~~~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~~~i  243 (247)
                      .|-.+.++.+.........++.|||++.-+-+.....+.+.++++..+...+..++.++++.++
T Consensus        51 ~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i  114 (236)
T TIGR01247        51 VPGIVAMTVFNMSFFSGISVIWDRQFGFLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILAL  114 (236)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3433444334444445567889999888777788899999999999988888877766555543

This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF

Probab=88.93  E-value=4.1  Score=35.04  Aligned_cols=43  Identities=14%  Similarity=0.173  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q psy7370         195 ICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITA  237 (247)
Q Consensus       195 ~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~  237 (247)
                      ..+.+++|||+|--|.+....++.+...++-++..+++.++..
T Consensus        69 ~~~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~  111 (240)
T TIGR03518        69 TMRSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILAL  111 (240)
T ss_pred             HHHHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999888776655443

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]

Probab=82.07  E-value=11  Score=31.82  Aligned_cols=64  Identities=19%  Similarity=0.195  Sum_probs=37.7

Q ss_pred             hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7370         180 FPLFMVLSWVFACAM-ICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLL  243 (247)
Q Consensus       180 ~~l~~~l~~~~~~~~-~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~~~i  243 (247)
                      .|-++.+..+..... ....+.+||+.+..+.+..+.++...+.++..+...+...+...++.++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~v~~~  155 (286)
T COG0842          91 VPGVILMSVLFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLV  155 (286)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHHhhCcHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            343333443444333 3344444699999999999999976666655555555554444444433

>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed

Probab=81.71  E-value=3.7  Score=28.89  Aligned_cols=32  Identities=13%  Similarity=0.215  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Q psy7370         199 IVYEKQERLKEMMRVMGLSNGVHWTAWFIDSI  230 (247)
Q Consensus       199 IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~  230 (247)
                      ..+|...|.|.|+-+||++--.+-+++++...
T Consensus         9 ~~~d~~~R~r~Y~i~M~~Ri~~fvlA~~~~~~   40 (73)
T PF11298_consen    9 LSQDQRRRRRRYLIMMGIRIPCFVLAAVVYRL   40 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            35678899999999999999988888888754

Currently no function is known.

>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein

Probab=81.57  E-value=13  Score=31.91  Aligned_cols=62  Identities=11%  Similarity=0.163  Sum_probs=44.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy7370         180 FPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLS  241 (247)
Q Consensus       180 ~~l~~~l~~~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~~  241 (247)
                      .|-++.++.+.....-...++.|||++.-+.++.+.++.+.+-++..+...+..++..+++.
T Consensus        63 ~pGi~~~~~~~~~~~~~~~~~~~r~~g~~~~l~~~p~~~~~~~l~~~l~~~~~~~~~~~i~~  124 (253)
T TIGR03861        63 VPGLCCMILLFNGMQSSLSMVYDREMGSMRVLLTSPLPRPFLLFCKLLASALISLLQVYAFL  124 (253)
T ss_pred             HHHHHHHHHHHHHHHhhhHhHHhHhcCHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34333333333334445678999999999999999999999999998888777777654433

Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00