Psyllid ID: psy7379

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-----
Protein Sequence
MGRFLDVPNGRQAIRNEILRSVGNQSQTYNAALNFFDSFFSDQNLTSSLNFLNDTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTLTYSIRMSTALIGDTYISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVATIAQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFLSNWLNVLPPLVNYFITIPQDHNHTDHSSNQPSSDPEPDVTQLIRSFLPAANIHKISGSEVTYVLPQDPASMGAYVSLFESLSENRAKLGIDSYGISDTSLEEKWGSLQLGRKLWLFVGNVSYKKVCLGWELTRMGYQTLV
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHccccccHHHHHHcccccccccccccccEEccccHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHcccccEEEEEEEcccccccccccEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccEEEEEcccccccccHHHHHHHHHHccccccccEEEEcccccHHHHHHcccccccccccccccccccccccHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccEEEcccccHHHHHHHHHHcccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEcccccHHHHHHHHHHHHHcccEEEEEEEcccccccccccEEEEEEEEcccccccEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHEEEEEccccccccccccccccccccHHHHHHHHHHccHHEEEHccccEEEEEcccHHccHHHHHHHHHHHHHHHHHccccccccccccHHHEEEEEcccccccEEEccccccccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mgrfldvpngrQAIRNEILRSVGNQSQTYNAALNFfdsffsdqnltsSLNFLNDTQESMQYVVQLLQCidfnkivpyndsataendAFLRMDNNTLWALInftqpgydklkptltYSIRMSTALIGdtyisdrfytldprsrplydlkYITFGFAYLQDMVEQSIIQehtgrestpgivlqqfpypcyiedqFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGlsngvhwtAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVATIAQSFLYSVLFDQANIAAASGGIIYFLLYlpypflsnwlnvlpplvnyfitipqdhnhtdhssnqpssdpepdVTQLIRSFlpaanihkisgsevtyvlpqdpasmGAYVSLFESLSENRaklgidsygisdtsleekwgslqlgRKLWLFVGNVSYKKVCLGWELTrmgyqtlv
Flexible Loop (DISEMBL)
mgrfldvpngrQAIRNEILRSVGNQSQTYNAALNFFDSFFSDQNLTSSLNFLNDTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTLTYSIRMSTALIGDTYISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVATIAQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFLSNWLNVLPPLVNYFITIPQDHNHTDHSSNQPSSDPEPDVTQLIRSFLPAANIHKISGSEVTYVLPQDPASMGAYVSLFESLSENRAKLGIDSYGISDTSLEEKWGSLQLGRKLWLFVGNVSYKKVCLGWELTRMGYQTLV
Low Complexity Region (SEG)
MGRFLDVPNGRQAIRNEILRSVGNQSQTYNAALNFFDSFFSDQNLTSSLNFLNDTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTLTYSIRMSTALIGDTYISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVATIAQSFLYSVLFDQANIAAASGGIIyfllylpypflSNWLNVLPPLVNYFITIPQDHNHTDHSSNQPSSDPEPDVTQLIRSFLPAANIHKISGSEVTYVLPQDPASMGAYVSLFESLSENRAKLGIDSYGISDTSLEEKWGSLQLGRKLWLFVGNVSYKKVCLGWELTRMGYQTLV
Disordered region (IsUnstruct)
****************EILRSVGNQSQTYNAALNFFDSFFSDQNLTSSLNFLNDTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTLTYSIRMSTALIGDTYISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVATIAQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFLSNWLNVLPPLVNYFITIP**********************QLIRSFLPAANIHKISGSEVTYVLPQDPASMGAYVSLFESLSENRAKLGIDSYGISDTSLEEKWGSLQLGRKLWLFVGNVSYKKVCLGWELTRMGY****
Disordered Region (DISOPRED)
*******PNGRQAIRNEILRSVGNQSQTYNAALNFFDSFFSDQNLTSSLNFLNDTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTLTYSIRMSTALIGDTYISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVATIAQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFLSNWLNVLPPLVNYFITIPQDHNHTDHSSNQPSSDPEPDVTQLIRSFLPAANIHKISGSEVTYVLPQDPASMGAYVSLFESLSENRAKLGIDSYGISDTSLEEKWGSLQ******************************L*
Disordered Region (DISEMBL)
MGRFLDVPNGRQAIRNEILRSVGNQSQTYNAALNFFDSFFSDQNLTSSLNFLNDTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTLTYSIRMSTALIGDTYISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVATIAQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFLSNWLNVLPPLVNYFITIPQDH*****************VTQLIRSFLPAANIHKISGSEVTYVLPQDPASMGAYVSLFESLSENRAKLGIDSYGISDTSLEEKWGSLQLGRKLWLFVGNVSYKKVCLGWELTRMGYQTLV
Disordered Region (DISPRO)
*GRFLDVPNGRQAIRNEILRSVGNQSQTYNAALNFFDSFFSDQNLTSSLNFLNDTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTLTYSIRMSTALIGDTYISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVATIAQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFLSNWLNVLPPLVNYFITIPQ***************PEPDVTQLIRSFLPAANIHKISGSEVTYVLPQDPASMGAYVSLFESLSENRAKLGIDSYGISDTSLEEKWGSLQLGRKLWLFVGNVSYKKVCLGWELTRMGYQTLV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRFLDVPNGRQAIRNEILRSVGNQSQTYNAALNFFDSFFSDQNLTSSLNFLNDTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTLTYSIRMSTALIGDTYISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVATIAQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFLSNWLNVLPPLVNYFITIPQDHNHTDHSSNQPSSDPEPDVTQLIRSFLPAANIHKISGSEVTYVLPQDPASMGAYVSLFESLSENRAKLGIDSYGISDTSLEEKWGSLQLGRKLWLFVGNVSYKKVCLGWELTRMGYQTLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	465	2.2.26 [Sep-21-2011]
P41233	2261	ATP-binding cassette sub-	yes	N/A	0.593	0.122	0.426	2e-66
O95477	2261	ATP-binding cassette sub-	yes	N/A	0.593	0.122	0.426	2e-66
O35600	2310	Retinal-specific ATP-bind	no	N/A	0.677	0.136	0.386	1e-59
P78363	2273	Retinal-specific ATP-bind	no	N/A	0.686	0.140	0.382	2e-59
Q7TNJ2	2170	ATP-binding cassette sub-	no	N/A	0.602	0.129	0.383	5e-57
Q91V24	2159	ATP-binding cassette sub-	no	N/A	0.576	0.124	0.384	1e-54
Q8IZY2	2146	ATP-binding cassette sub-	no	N/A	0.578	0.125	0.372	3e-52
Q9BZC7	2435	ATP-binding cassette sub-	no	N/A	0.498	0.095	0.413	3e-47
Q9ESR9	2434	ATP-binding cassette sub-	no	N/A	0.608	0.116	0.374	3e-47
P41234	2434	ATP-binding cassette sub-	no	N/A	0.498	0.095	0.400	4e-44

>sp|P41233|ABCA1_MOUSE ATP-binding cassette sub-family A member 1 OS=Mus musculus GN=Abca1 PE=1 SV=4

 Score =  253 bits (647), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 119/279 (42%), Positives = 183/279 (65%), Gaps = 3/279 (1%)

Query: 53  NDTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFT--QPGYDKL 110
           N+T +++Q + + ++C++ NK+ P        N +   +D    WA I FT   P   +L
Sbjct: 489 NETNQAIQTISRFMECVNLNKLEPIPTEVRLINKSMELLDERKFWAGIVFTGITPDSVEL 548

Query: 111 KPTLTYSIRMSTALIGDT-YISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEH 169
              + Y IRM    +  T  I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  
Sbjct: 549 PHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVL 608

Query: 170 TGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLK 229
           TG E   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ ++I KSIVYEK+ RLK
Sbjct: 609 TGSEKKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKSIVYEKEARLK 668

Query: 230 EMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVA 289
           E MR+MGL NG+ W +WF+ S++ ++++A LL ++L  G+++ +S+P ++F+FL  F + 
Sbjct: 669 ETMRIMGLDNGILWFSWFVSSLIPLLVSAGLLVVILKLGNLLPYSDPSVVFVFLSVFAMV 728

Query: 290 TIAQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFLSNW 328
           TI Q FL S LF +AN+AAA GGIIYF LYLPY     W
Sbjct: 729 TILQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAW 767

cAMP-dependent and sulfonylurea-sensitive anion transporter. Key gatekeeper influencing intracellular cholesterol transport.
Mus musculus (taxid: 10090)

>sp|O95477|ABCA1_HUMAN ATP-binding cassette sub-family A member 1 OS=Homo sapiens GN=ABCA1 PE=1 SV=3

 Score =  253 bits (646), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 119/279 (42%), Positives = 182/279 (65%), Gaps = 3/279 (1%)

Query: 53  NDTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFT--QPGYDKL 110
           N+T ++++ + + ++C++ NK+ P        N +   +D    WA I FT   PG  +L
Sbjct: 489 NETNQAIRTISRFMECVNLNKLEPIATEVWLINKSMELLDERKFWAGIVFTGITPGSIEL 548

Query: 111 KPTLTYSIRMSTALIGDT-YISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEH 169
              + Y IRM    +  T  I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  
Sbjct: 549 PHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVL 608

Query: 170 TGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLK 229
           TG E   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ ++I K IVYEK+ RLK
Sbjct: 609 TGTEKKTGVYMQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLK 668

Query: 230 EMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVA 289
           E MR+MGL N + W +WFI S++ ++++A LL ++L  G+++ +S+P ++F+FL  F V 
Sbjct: 669 ETMRIMGLDNSILWFSWFISSLIPLLVSAGLLVVILKLGNLLPYSDPSVVFVFLSVFAVV 728

Query: 290 TIAQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFLSNW 328
           TI Q FL S LF +AN+AAA GGIIYF LYLPY     W
Sbjct: 729 TILQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAW 767

cAMP-dependent and sulfonylurea-sensitive anion transporter. Key gatekeeper influencing intracellular cholesterol transport.

Homo sapiens (taxid: 9606)

>sp|O35600|ABCA4_MOUSE Retinal-specific ATP-binding cassette transporter OS=Mus musculus GN=Abca4 PE=2 SV=1

 Score =  231 bits (589), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 125/323 (38%), Positives = 191/323 (59%), Gaps = 8/323 (2%)

Query: 14  IRNEILRSVGNQSQTYNAALNFFDSFFSDQNLTSSLNF-----LNDTQESMQYVVQLLQC 68
           +++ I R +G +  T  A LNFF +   ++      +F      N T   ++   Q L+C
Sbjct: 460 VKDFINRQLGEEGITTEAVLNFFSNGPQEKQADDMTSFDWRDIFNITDRFLRLANQYLEC 519

Query: 69  IDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQ--PGYDKLKPTLTYSIRMSTALIG 126
           +  +K   Y+D       A   ++ N  WA + F    P    L P + Y IRM   ++ 
Sbjct: 520 LVLDKFESYDDEVQLTQRALSLLEENRFWAGVVFPGMYPWASSLPPHVKYKIRMDIDVVE 579

Query: 127 DT-YISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPY 185
            T  I DR++   PR+ P+ D +YI  GFAYLQDMVEQ I++     E   G+ LQQ PY
Sbjct: 580 KTNKIKDRYWDSGPRADPVEDFRYIWGGFAYLQDMVEQGIVKSQMQAEPPIGVYLQQMPY 639

Query: 186 PCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTA 245
           PC+++D F+  +++ FP+FMVL+W+++ SM  K IV EK+ RLKE ++  G+SN V W  
Sbjct: 640 PCFVDDSFMIILNRCFPIFMVLAWIYSVSMTVKGIVLEKELRLKETLKNQGVSNAVIWCT 699

Query: 246 WFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVATIAQSFLYSVLFDQAN 305
           WF+DS  +M ++  LL+L +++G ++ +S+P I+F+FL++F  ATI QSFL S LF +A+
Sbjct: 700 WFLDSFSIMALSIFLLTLFIMHGRILHYSDPFILFLFLLAFATATIMQSFLLSTLFSKAS 759

Query: 306 IAAASGGIIYFLLYLPYPFLSNW 328
           +AAA  G+IYF LYLP+     W
Sbjct: 760 LAAACSGVIYFTLYLPHVLCFAW 782

In the visual cycle, acts as an inward-directed retinoid flipase, retinoid substrates imported by ABCA4 from the extracellular or intradiscal (rod) membrane surfaces to the cytoplasmic membrane surface are all-trans-retinaldehyde (ATR) and N-retinyl-phosphatidyl-ethanolamine (NR-PE). Once transported to the cytoplasmic surface, ATR is reduced to vitamin A by trans-retinol dehydrogenase (tRDH) and then transferred to the retinal pigment epithelium (RPE) where it is converted to 11-cis-retinal. May play a role in photoresponse, removing ATR/NR-PE from the extracellular photoreceptor surfaces during bleach recovery.

Mus musculus (taxid: 10090)

>sp|P78363|ABCA4_HUMAN Retinal-specific ATP-binding cassette transporter OS=Homo sapiens GN=ABCA4 PE=1 SV=3

 Score =  230 bits (587), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 125/327 (38%), Positives = 189/327 (57%), Gaps = 8/327 (2%)

Query: 10  GRQAIRNEILRSVGNQSQTYNAALNFFDSFFSDQNLTSSLNF-----LNDTQESMQYVVQ 64
           G   +++ + R +G +  T  A LNF      +       NF      N T  +++ V Q
Sbjct: 456 GNPTVKDFLNRQLGEEGITAEAILNFLYKGPRESQADDMANFDWRDIFNITDRTLRLVNQ 515

Query: 65  LLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQ--PGYDKLKPTLTYSIRMST 122
            L+C+  +K   YND       A   ++ N  WA + F    P    L P + Y IRM  
Sbjct: 516 YLECLVLDKFESYNDETQLTQRALSLLEENMFWAGVVFPDMYPWTSSLPPHVKYKIRMDI 575

Query: 123 ALIGDT-YISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQ 181
            ++  T  I DR++   PR+ P+ D +YI  GFAYLQDMVEQ I +     E+  GI LQ
Sbjct: 576 DVVEKTNKIKDRYWDSGPRADPVEDFRYIWGGFAYLQDMVEQGITRSQVQAEAPVGIYLQ 635

Query: 182 QFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGV 241
           Q PYPC+++D F+  +++ FP+FMVL+W+++ SM  KSIV EK+ RLKE ++  G+SN V
Sbjct: 636 QMPYPCFVDDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAV 695

Query: 242 HWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVATIAQSFLYSVLF 301
            W  WF+DS  +M ++  LL++ +++G ++ +S+P I+F+FL++F  ATI   FL S  F
Sbjct: 696 IWCTWFLDSFSIMSMSIFLLTIFIMHGRILHYSDPFILFLFLLAFSTATIMLCFLLSTFF 755

Query: 302 DQANIAAASGGIIYFLLYLPYPFLSNW 328
            +A++AAA  G+IYF LYLP+     W
Sbjct: 756 SKASLAAACSGVIYFTLYLPHILCFAW 782

In the visual cycle, acts as an inward-directed retinoid flipase, retinoid substrates imported by ABCA4 from the extracellular or intradiscal (rod) membrane surfaces to the cytoplasmic membrane surface are all-trans-retinaldehyde (ATR) and N-retinyl-phosphatidyl-ethanolamine (NR-PE). Once transported to the cytoplasmic surface, ATR is reduced to vitamin A by trans-retinol dehydrogenase (tRDH) and then transferred to the retinal pigment epithelium (RPE) where it is converted to 11-cis-retinal. May play a role in photoresponse, removing ATR/NR-PE from the extracellular photoreceptor surfaces during bleach recovery.

Homo sapiens (taxid: 9606)

>sp|Q7TNJ2|ABCA7_RAT ATP-binding cassette sub-family A member 7 OS=Rattus norvegicus GN=Abca7 PE=1 SV=1

 Score =  222 bits (566), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 112/292 (38%), Positives = 175/292 (59%), Gaps = 12/292 (4%)

Query: 54  DTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGY--DKLK 111
           D     + + Q+L+C+  +K+          + A   +    LWA I F  P +  D  +
Sbjct: 389 DMGRLAEILGQILECVSLDKLEAVPSEEALVSRALELLGERRLWAGIVFLSPEHPLDSSE 448

Query: 112 PT---------LTYSIRMSTALIGDT-YISDRFYTLDPRSRPLYDLKYITFGFAYLQDMV 161
           P          L   IRM    +  T  I D+F+   P + PL DL+Y+  GF YLQD++
Sbjct: 449 PPSPTTTGPGHLRVKIRMDIDDVTRTNKIRDKFWDPGPSADPLMDLRYVWGGFVYLQDLL 508

Query: 162 EQSIIQEHTGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIV 221
           EQ+ ++  +GR+S  G+ LQQ P+PCY++D F++ +S++ PLF+ L+W+++ ++  K++V
Sbjct: 509 EQAAVRVLSGRDSRAGLYLQQMPHPCYVDDVFLRVLSRSLPLFLTLAWIYSVALTVKAVV 568

Query: 222 YEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFI 281
            EK+ RL+E MR MGLS  V W  WF+  +   +++A LL L+L  G+++ +S+PV++F+
Sbjct: 569 REKETRLRETMRAMGLSRAVLWLGWFLSCLGPFLVSAALLVLVLKLGNILPYSHPVVVFL 628

Query: 282 FLVSFCVATIAQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFLSNWLNVLP 333
           FL +F VAT+AQSFL S  F +AN+AAA GG+ YF LYLPY     W   LP
Sbjct: 629 FLAAFAVATVAQSFLLSAFFSRANLAAACGGLAYFALYLPYVLCVAWRERLP 680

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Rattus norvegicus (taxid: 10116)

>sp|Q91V24|ABCA7_MOUSE ATP-binding cassette sub-family A member 7 OS=Mus musculus GN=Abca7 PE=1 SV=1

 Score =  214 bits (544), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 108/281 (38%), Positives = 168/281 (59%), Gaps = 13/281 (4%)

Query: 64  QLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPT---------- 113
           Q+++C+  +K+          + A   +    LWA I F  P +  L P+          
Sbjct: 399 QMMECVSLDKLEAVPSEEALVSRALELLGERRLWAGIVFLSPEH-PLDPSELSSPALSPG 457

Query: 114 -LTYSIRMSTALIGDT-YISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTG 171
            L + IRM    +  T  I D+F+   P + P  DL+Y+  GF YLQD++EQ+ ++   G
Sbjct: 458 HLRFKIRMDIDDVTRTNKIRDKFWDPGPSADPFMDLRYVWGGFVYLQDLLEQAAVRVLGG 517

Query: 172 RESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEM 231
             S  G+ LQQ P+PCY++D F++ +S++ PLF+ L+W+++ ++  K++V EK+ RL+E 
Sbjct: 518 GNSRTGLYLQQMPHPCYVDDVFLRVLSRSLPLFLTLAWIYSVALTVKAVVREKETRLRET 577

Query: 232 MRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVATI 291
           MR MGLS  V W  WF+  +   +++A LL L+L  G+++ +S+PV+IF+FL +F VAT+
Sbjct: 578 MRAMGLSRAVLWLGWFLSCLGPFLVSAALLVLVLKLGNILPYSHPVVIFLFLAAFAVATV 637

Query: 292 AQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFLSNWLNVL 332
           AQSFL S  F +AN+AAA GG+ YF LYLPY     W   L
Sbjct: 638 AQSFLLSAFFSRANLAAACGGLAYFALYLPYVLCVAWRERL 678

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Mus musculus (taxid: 10090)

>sp|Q8IZY2|ABCA7_HUMAN ATP-binding cassette sub-family A member 7 OS=Homo sapiens GN=ABCA7 PE=1 SV=3

 Score =  206 bits (524), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 105/282 (37%), Positives = 167/282 (59%), Gaps = 13/282 (4%)

Query: 64  QLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPT---------- 113
           ++ +C+  +K+      A   + A   +  +  WA + F  P  D   PT          
Sbjct: 402 RVTECLSLDKLEAAPSEAALVSRALQLLAEHRFWAGVVFLGP-EDSSDPTEHPTPDLGPG 460

Query: 114 -LTYSIRMSTALIGDT-YISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTG 171
            +   IRM   ++  T  I DRF+   P + PL DL+Y+  GF YLQD+VE++ ++  +G
Sbjct: 461 HVRIKIRMDIDVVTRTNKIRDRFWDPGPAADPLTDLRYVWGGFVYLQDLVERAAVRVLSG 520

Query: 172 RESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEM 231
                G+ LQQ PYPCY++D F++ +S++ PLF+ L+W+++ ++  K++V EK+ RL++ 
Sbjct: 521 ANPRAGLYLQQMPYPCYVDDVFLRVLSRSLPLFLTLAWIYSVTLTVKAVVREKETRLRDT 580

Query: 232 MRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVATI 291
           MR MGLS  V W  WF+  +   +++A LL L+L  G ++ +S+P ++F+FL +F VAT+
Sbjct: 581 MRAMGLSRAVLWLGWFLSCLGPFLLSAALLVLVLKLGDILPYSHPGVVFLFLAAFAVATV 640

Query: 292 AQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFLSNWLNVLP 333
            QSFL S  F +AN+AAA GG+ YF LYLPY     W + LP
Sbjct: 641 TQSFLLSAFFSRANLAAACGGLAYFSLYLPYVLCVAWRDRLP 682

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Homo sapiens (taxid: 9606)

>sp|Q9BZC7|ABCA2_HUMAN ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3

 Score =  190 bits (482), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 98/237 (41%), Positives = 145/237 (61%), Gaps = 5/237 (2%)

Query: 92  DNNTLWALINFTQPGYDKLKPTLTYSIRMSTALIGDT-YISDRFYTLDPRSRPLYDLKYI 150
           DN T++A + F       L P + Y IR +++    T  I   ++   P +   +   Y 
Sbjct: 599 DNVTVFASVIFQTRKDGSLPPHVHYKIRQNSSFTEKTNEIRRAYWRPGPNTGGRF---YF 655

Query: 151 TFGFAYLQDMVEQSIIQEHTGREST-PGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSW 209
            +GF ++QDM+E++II    G +   PG  +Q FPYPCY  D F+  +    PL MV+SW
Sbjct: 656 LYGFVWIQDMMERAIIDTFVGHDVVEPGSYVQMFPYPCYTRDDFLFVIEHMMPLCMVISW 715

Query: 210 VFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGH 269
           V++ +M  + IV EK+ RLKE+M+ MGL+N VHW AWFI   V + I+   L+ +L YG 
Sbjct: 716 VYSVAMTIQHIVAEKEHRLKEVMKTMGLNNAVHWVAWFITGFVQLSISVTALTAILKYGQ 775

Query: 270 VIQHSNPVIIFIFLVSFCVATIAQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFLS 326
           V+ HS+ VII++FL  + VATI   FL SVL+ +A +A+A GGIIYFL Y+PY +++
Sbjct: 776 VLMHSHVVIIWLFLAVYAVATIMFCFLVSVLYSKAKLASACGGIIYFLSYVPYMYVA 832

Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development.

Homo sapiens (taxid: 9606)

>sp|Q9ESR9|ABCA2_RAT ATP-binding cassette sub-family A member 2 OS=Rattus norvegicus GN=Abca2 PE=1 SV=1

 Score =  189 bits (481), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 110/294 (37%), Positives = 167/294 (56%), Gaps = 11/294 (3%)

Query: 39  FFSDQNLTSSLNFLNDTQESMQYVVQLLQ--CIDFNKIVPYNDSAT--AENDAFLRMDNN 94
           +FS  N T+ L  L+    +    +Q +    +D  K  P  +S      N A+   DN 
Sbjct: 544 YFSLPNGTALLQQLDTIDNAACGWIQFMSKVSVDIFKGFPDEESIVNYTLNQAY--QDNV 601

Query: 95  TLWALINFTQPGYDKLKPTLTYSIRMSTALIGDT-YISDRFYTLDPRSRPLYDLKYITFG 153
           T++A + F       L P + Y IR +++    T  I   ++   P +   +   Y  +G
Sbjct: 602 TVFASVIFQTRKDGSLPPHVHYKIRQNSSFTEKTNEIRRAYWRPGPNTGGRF---YFLYG 658

Query: 154 FAYLQDMVEQSIIQEHTGREST-PGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFA 212
           F ++QDM+E++II    G +   PG  +Q FPYPCY  D F+  +    PL MV+SWV++
Sbjct: 659 FVWIQDMIERAIINTFVGHDVVEPGNYVQMFPYPCYTRDDFLFVIEHMMPLCMVISWVYS 718

Query: 213 CSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQ 272
            +M  + IV EK+ RLKE+M+ MGL+N VHW AWFI   V + I+   L+ +L YG V+ 
Sbjct: 719 VAMTIQHIVAEKEHRLKEVMKTMGLNNAVHWVAWFITGFVQLSISVTALTAILKYGQVLM 778

Query: 273 HSNPVIIFIFLVSFCVATIAQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFLS 326
           HS+ +II++FL  + VATI   FL SVL+ +A +A+A GGIIYFL Y+PY +++
Sbjct: 779 HSHVLIIWLFLAVYAVATIMFCFLVSVLYSKAKLASACGGIIYFLSYVPYMYVA 832

Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development.

Rattus norvegicus (taxid: 10116)

>sp|P41234|ABCA2_MOUSE ATP-binding cassette sub-family A member 2 OS=Mus musculus GN=Abca2 PE=1 SV=4

 Score =  179 bits (455), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 95/237 (40%), Positives = 141/237 (59%), Gaps = 5/237 (2%)

Query: 92  DNNTLWALINFTQPGYDKLKPTLTYSIRMSTALIGDT-YISDRFYTLDPRSRPLYDLKYI 150
           DN T++A + F       L P + Y IR +++    T  I   ++   P +   +   Y 
Sbjct: 598 DNVTVFASVIFQTRKDGSLPPHVHYKIRQNSSFTEKTNEIRRAYWRPGPNTGGRF---YF 654

Query: 151 TFGFAYLQDMVEQSIIQEHTGREST-PGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSW 209
            +G    QDM+E++II    G +   PG  +Q FPYPCY  D F+  +    PL MV+SW
Sbjct: 655 LYGLRLDQDMMERAIINTFVGHDVVEPGNYVQMFPYPCYTRDDFLFVIEHMMPLCMVISW 714

Query: 210 VFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGH 269
           V++ +M  + IV EK+ RLKE+M+ MGL+N VHW AWFI   V + I+   L+ +L Y  
Sbjct: 715 VYSVAMTIQHIVAEKEHRLKEVMKTMGLNNAVHWVAWFITGFVQLSISVTALTAILKYCQ 774

Query: 270 VIQHSNPVIIFIFLVSFCVATIAQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFLS 326
           V+ HS+ +II++FL  + VATI   FL SVL+ +A +A+A GGIIYFL Y+PY +++
Sbjct: 775 VLMHSHVLIIWLFLAVYAVATIMFCFLVSVLYSKAKLASACGGIIYFLSYVPYMYVA 831

Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	465
391346004	2232	PREDICTED: ATP-binding cassette sub-fami	0.645	0.134	0.455	6e-74
443734953	2255	hypothetical protein CAPTEDRAFT_226736 [	0.580	0.119	0.458	3e-72
410978795	2243	PREDICTED: ATP-binding cassette sub-fami	0.623	0.129	0.416	2e-66
149738947	2261	PREDICTED: ATP-binding cassette sub-fami	0.593	0.122	0.437	3e-66
281350917	2244	hypothetical protein PANDA_020305 [Ailur	0.623	0.129	0.412	4e-66
301789113	2207	PREDICTED: ATP-binding cassette sub-fami	0.623	0.131	0.412	4e-66
395823965	2261	PREDICTED: ATP-binding cassette sub-fami	0.595	0.122	0.442	4e-66
291382853	2261	PREDICTED: ATP-binding cassette, sub-fam	0.593	0.122	0.426	4e-66
440896322	2116	ATP-binding cassette sub-family A member	0.623	0.137	0.409	5e-66
296484405	2261	TPA: ATP-binding cassette, sub-family A	0.623	0.128	0.409	6e-66

>gi|391346004|ref|XP_003747270.1| PREDICTED: ATP-binding cassette sub-family A member 1 [Metaseiulus occidentalis]

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 145/318 (45%), Positives = 201/318 (63%), Gaps = 18/318 (5%)

Query: 22  VGNQSQTYNAALNFFDSFFSDQNLTSSLNFLNDTQESMQYVVQL-------LQCIDFNKI 74
           V N S+T    +N          +T +L +L +  E +Q   ++       L C++ N+ 
Sbjct: 488 VNNASRTTGDNVN-------STGVTETLGWLANVPEYIQGANRIAHEIENALNCVEMNRF 540

Query: 75  VPYNDSATAENDAFLRMDNNTLWALINFTQ---PGYDKLKPTLTYSIRMSTALIGDT-YI 130
             Y+       +    M  N LWA + FT    P   K+   + Y IRM    +  T  I
Sbjct: 541 EGYDREEDLMRNGLKLMAENKLWAALVFTNTGGPNSTKIPKFIRYKIRMDARKVDSTKRI 600

Query: 131 SDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYIE 190
            DR Y   PR RP  DLKYITFGFAYLQD+VEQ+II  HTG  +  G+ LQQFPYPCYI 
Sbjct: 601 EDRVYHPGPRRRPAIDLKYITFGFAYLQDLVEQAIISLHTGWTNNTGVYLQQFPYPCYIF 660

Query: 191 DQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDS 250
           DQFI  ++++FP+FMVLSWV++ SMI K+IV EK+ RLKE M+VMGL+N V WTAWFI+S
Sbjct: 661 DQFIVTIAESFPMFMVLSWVYSFSMIIKTIVREKELRLKEAMKVMGLNNSVLWTAWFINS 720

Query: 251 IVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVATIAQSFLYSVLFDQANIAAAS 310
            + M +++VLL+L+L +G +++HS+P II +FL+ F  ATI ++F+ +  F +ANIAA +
Sbjct: 721 FLFMFLSSVLLTLILKFGKILEHSDPTIILLFLMCFACATITKAFMVTTWFSRANIAACA 780

Query: 311 GGIIYFLLYLPYPFLSNW 328
           GGI++F LYLPYPF+  W
Sbjct: 781 GGIVFFTLYLPYPFVKLW 798

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443734953|gb|ELU18808.1| hypothetical protein CAPTEDRAFT_226736 [Capitella teleta]

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 126/275 (45%), Positives = 188/275 (68%), Gaps = 5/275 (1%)

Query: 59  MQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTLTYSI 118
           M  +VQ + C +F+K  P+       N     + +N LWA + F     + L   + Y I
Sbjct: 486 MTMIVQYMNCFEFDKFEPHKTEEDVVNTGLTYIGDNKLWAGLIFDIDSSENLPTHIKYKI 545

Query: 119 RMSTALIGDTYIS---DRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGR--E 173
           RM T  +  T  S   DRF+T  PR++PL D+KY+ +GF+Y+QDMVE +II+EHTG   +
Sbjct: 546 RMDTDRVDSTSKSRVLDRFWTPGPRAKPLPDMKYVVYGFSYIQDMVEHAIIREHTGDSLD 605

Query: 174 STPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMR 233
              G+ +QQFPYPCYI D+F  A+S++ PLFM+LSW++A S++ K+IVYEK++RLKE+M+
Sbjct: 606 EDIGMTVQQFPYPCYINDKFTMAISRSLPLFMILSWIYAVSILVKAIVYEKEQRLKEVMK 665

Query: 234 VMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVATIAQ 293
            MGL+N VHW AWFI + V+M+++  LL ++L  G V++HS+  +IF+FL++F +ATI Q
Sbjct: 666 TMGLTNAVHWCAWFITAFVMMLLSVFLLLIVLKVGTVLEHSDGSVIFVFLLAFTIATIMQ 725

Query: 294 SFLYSVLFDQANIAAASGGIIYFLLYLPYPFLSNW 328
            F+ SV F +AN+AAA  GI+YF+ ++PY F + W
Sbjct: 726 CFMISVFFQRANLAAACAGILYFIGHIPYTFCTQW 760

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|410978795|ref|XP_003995773.1| PREDICTED: ATP-binding cassette sub-family A member 1 [Felis catus]

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 122/293 (41%), Positives = 191/293 (65%), Gaps = 3/293 (1%)

Query: 53  NDTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFT--QPGYDKL 110
           N+T +++Q + + ++C++ NK+ P        N +   +D    WA I FT   PG  +L
Sbjct: 489 NETNQAIQTISRFMECVNLNKLEPIATEVRLINKSMELLDERKFWAGIVFTGITPGSVEL 548

Query: 111 KPTLTYSIRMSTALIGDT-YISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEH 169
              + Y IRM    +  T  I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  
Sbjct: 549 PHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVL 608

Query: 170 TGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLK 229
           TG E   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ ++I K IVYEK+ RLK
Sbjct: 609 TGTEKKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLK 668

Query: 230 EMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVA 289
           E MR+MGL NG+ W +WFI S++ ++++A LL ++L  G+++ +S+P ++F+FL  F V 
Sbjct: 669 ETMRIMGLDNGILWFSWFISSLIPLLVSAGLLVVILKLGNLLPYSDPSVVFVFLSVFAVV 728

Query: 290 TIAQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFLSNWLNVLPPLVNYFITI 342
           TI Q FL S LF +AN+AAA GGIIYF+LYLPY     W + +   +  F+++
Sbjct: 729 TILQCFLISTLFSRANLAAACGGIIYFMLYLPYVLCVAWQDYVGFTLKIFVSL 781

Source: Felis catus

Species: Felis catus

Genus: Felis

Family: Felidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149738947|ref|XP_001493840.1| PREDICTED: ATP-binding cassette sub-family A member 1 [Equus caballus]

 Score =  258 bits (660), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 122/279 (43%), Positives = 183/279 (65%), Gaps = 3/279 (1%)

Query: 53  NDTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFT--QPGYDKL 110
           N+T  ++Q + + ++C++ NK+ P        N +   +D+   WA I FT   PG   L
Sbjct: 489 NETNRAIQTISRFMECVNLNKLEPIATEVRLINKSMELLDDRKFWAGIVFTGIAPGSVDL 548

Query: 111 KPTLTYSIRMSTALIGDT-YISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEH 169
              + Y IRM    +  T  I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  
Sbjct: 549 PHHVKYKIRMDIDNVERTNKIKDAYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVL 608

Query: 170 TGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLK 229
           TG E   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ ++I KSIVYEK+ RLK
Sbjct: 609 TGTEKKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKSIVYEKEARLK 668

Query: 230 EMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVA 289
           E MR+MGL NG+ W +WFI S++ ++++A LL ++L  G+++ +S+P ++F+FL  F V 
Sbjct: 669 ETMRIMGLDNGILWFSWFISSLIPLLVSAGLLVVILKLGNLLPYSDPSVVFVFLSVFAVV 728

Query: 290 TIAQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFLSNW 328
           TI Q FL S LF +AN+AAA GGIIYF LYLPY     W
Sbjct: 729 TILQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAW 767

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|281350917|gb|EFB26501.1| hypothetical protein PANDA_020305 [Ailuropoda melanoleuca]

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 121/293 (41%), Positives = 191/293 (65%), Gaps = 3/293 (1%)

Query: 53  NDTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFT--QPGYDKL 110
           N+T +++Q + + ++C++ NK+ P        N +   +D    WA + FT   PG  +L
Sbjct: 467 NETDQAIQTISRFMECVNLNKLEPVATEVRLINKSMELLDERKFWAGVVFTGITPGSVEL 526

Query: 111 KPTLTYSIRMSTALIGDT-YISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEH 169
              + Y IRM    +  T  I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  
Sbjct: 527 PRHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVL 586

Query: 170 TGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLK 229
           TG E   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ ++I K IVYEK+ RLK
Sbjct: 587 TGTEKKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLK 646

Query: 230 EMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVA 289
           E MR+MGL NG+ W +WFI S++ ++++A LL ++L  G+++ +S+P ++F+FL  F V 
Sbjct: 647 ETMRIMGLDNGILWFSWFISSLIPLLVSAGLLVVILKLGNLLPYSDPSVVFVFLSVFGVV 706

Query: 290 TIAQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFLSNWLNVLPPLVNYFITI 342
           TI Q FL S LF +AN+AAA GGIIYF+LYLPY     W + +   +  F+++
Sbjct: 707 TILQCFLISTLFSRANLAAACGGIIYFILYLPYVLCVAWQDYVGFTLKIFVSL 759

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301789113|ref|XP_002929973.1| PREDICTED: ATP-binding cassette sub-family A member 1-like [Ailuropoda melanoleuca]

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 121/293 (41%), Positives = 191/293 (65%), Gaps = 3/293 (1%)

Query: 53  NDTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFT--QPGYDKL 110
           N+T +++Q + + ++C++ NK+ P        N +   +D    WA + FT   PG  +L
Sbjct: 489 NETDQAIQTISRFMECVNLNKLEPVATEVRLINKSMELLDERKFWAGVVFTGITPGSVEL 548

Query: 111 KPTLTYSIRMSTALIGDT-YISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEH 169
              + Y IRM    +  T  I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  
Sbjct: 549 PRHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVL 608

Query: 170 TGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLK 229
           TG E   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ ++I K IVYEK+ RLK
Sbjct: 609 TGTEKKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLK 668

Query: 230 EMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVA 289
           E MR+MGL NG+ W +WFI S++ ++++A LL ++L  G+++ +S+P ++F+FL  F V 
Sbjct: 669 ETMRIMGLDNGILWFSWFISSLIPLLVSAGLLVVILKLGNLLPYSDPSVVFVFLSVFGVV 728

Query: 290 TIAQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFLSNWLNVLPPLVNYFITI 342
           TI Q FL S LF +AN+AAA GGIIYF+LYLPY     W + +   +  F+++
Sbjct: 729 TILQCFLISTLFSRANLAAACGGIIYFILYLPYVLCVAWQDYVGFTLKIFVSL 781

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395823965|ref|XP_003785245.1| PREDICTED: ATP-binding cassette sub-family A member 1 [Otolemur garnettii]

 Score =  258 bits (659), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 124/280 (44%), Positives = 182/280 (65%), Gaps = 3/280 (1%)

Query: 52  LNDTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFT--QPGYDK 109
           LN+T +++Q V + ++C++ NK+ P        N +   +D    WA I FT   P   +
Sbjct: 488 LNETDQAIQTVSRFMECVNLNKLEPIPTEVRLINKSMELLDERKFWAGIVFTGITPDSIE 547

Query: 110 LKPTLTYSIRMSTALIGDT-YISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQE 168
           L   + Y IRM    +  T  I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+ 
Sbjct: 548 LPHHVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRV 607

Query: 169 HTGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERL 228
            TG E   G+ +QQ PYPCY++D F++ +S+  PLFM L+W+++ +MI K IVYEK+ RL
Sbjct: 608 LTGAEKKTGVYVQQMPYPCYVDDIFLRVMSRLMPLFMTLAWIYSVAMIIKGIVYEKEARL 667

Query: 229 KEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCV 288
           KE MR+MGL NG+ W +WFI S+V ++++A LL ++L  G+++ +S P ++F+FL  F V
Sbjct: 668 KETMRIMGLDNGILWFSWFISSLVPLLVSAGLLVVILKLGNLLPYSEPSVVFVFLSVFAV 727

Query: 289 ATIAQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFLSNW 328
            TI Q FL S LF +AN+AAA GGIIYF+LYLPY     W
Sbjct: 728 VTILQCFLISTLFSRANLAAACGGIIYFMLYLPYVLCVAW 767

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291382853|ref|XP_002708179.1| PREDICTED: ATP-binding cassette, sub-family A member 1-like [Oryctolagus cuniculus]

 Score =  258 bits (659), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 119/279 (42%), Positives = 183/279 (65%), Gaps = 3/279 (1%)

Query: 53  NDTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFT--QPGYDKL 110
           N+T +++Q + + ++C++ NK+ P        N +   +D    WA + FT   P   +L
Sbjct: 489 NETNQAIQTISRFMECVNLNKLEPIATEVRLINKSMELLDERKFWAGVVFTGITPDSAEL 548

Query: 111 KPTLTYSIRMSTALIGDT-YISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEH 169
            P + Y IRM    +  T  I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  
Sbjct: 549 PPHVKYKIRMDIDNVERTNKIKDAYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVL 608

Query: 170 TGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLK 229
           TG E   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ ++I K IVYEK+ RLK
Sbjct: 609 TGTEKKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLK 668

Query: 230 EMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVA 289
           E MR+MGL NG+ W +WFI S++ ++++A LL ++L  G+++ +S+P ++F+FL  F V 
Sbjct: 669 ETMRIMGLDNGILWFSWFISSLIPLLVSAGLLVVILKLGNLLPYSDPSVVFVFLSVFAVV 728

Query: 290 TIAQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFLSNW 328
           TI Q FL S +F +AN+AAA GGIIYF LYLPY     W
Sbjct: 729 TIMQCFLISTIFSRANLAAACGGIIYFTLYLPYVLCVAW 767

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|440896322|gb|ELR48284.1| ATP-binding cassette sub-family A member 1, partial [Bos grunniens mutus]

 Score =  258 bits (658), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 120/293 (40%), Positives = 190/293 (64%), Gaps = 3/293 (1%)

Query: 53  NDTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFT--QPGYDKL 110
           N+T +++Q + + ++C++ NK+ P        N +   +D    WA + FT   PG  +L
Sbjct: 352 NETNQAIQTISRFMECVNLNKLEPVATEVLLINKSMELLDERKFWAGVVFTGIAPGSVEL 411

Query: 111 KPTLTYSIRMSTALIGDT-YISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEH 169
              + Y IRM    +  T  I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  
Sbjct: 412 PHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVL 471

Query: 170 TGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLK 229
           TG E   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ ++I K IVYEK+ RLK
Sbjct: 472 TGTEKKTGVYMQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLK 531

Query: 230 EMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVA 289
           E MR+MGL NG+ W +WFI S++ ++++A LL ++L  G+++ +S+P ++F+FL  F   
Sbjct: 532 ETMRIMGLDNGILWFSWFISSLIPLLVSAGLLVVILKLGNLLPYSDPSVVFVFLSVFATV 591

Query: 290 TIAQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFLSNWLNVLPPLVNYFITI 342
           TI Q FL S LF +AN+AAA GGIIYF+LYLPY     W + +   +  F+++
Sbjct: 592 TILQCFLISTLFSRANLAAACGGIIYFMLYLPYVLCVAWQDYVGFTLKIFVSL 644

Source: Bos grunniens mutus

Species: Bos grunniens

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|296484405|tpg|DAA26520.1| TPA: ATP-binding cassette, sub-family A member 1 [Bos taurus]

 Score =  258 bits (658), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 120/293 (40%), Positives = 190/293 (64%), Gaps = 3/293 (1%)

Query: 53  NDTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFT--QPGYDKL 110
           N+T +++Q + + ++C++ NK+ P        N +   +D    WA + FT   PG  +L
Sbjct: 489 NETNQAIQTISRFMECVNLNKLEPVATEVLLINKSMELLDERKFWAGVVFTGIAPGSVEL 548

Query: 111 KPTLTYSIRMSTALIGDT-YISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEH 169
              + Y IRM    +  T  I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  
Sbjct: 549 PHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVL 608

Query: 170 TGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLK 229
           TG E   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ ++I K IVYEK+ RLK
Sbjct: 609 TGTEKKTGVYMQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLK 668

Query: 230 EMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVA 289
           E MR+MGL NG+ W +WFI S++ ++++A LL ++L  G+++ +S+P ++F+FL  F   
Sbjct: 669 ETMRIMGLDNGILWFSWFISSLIPLLVSAGLLVVILKLGNLLPYSDPSVVFVFLSVFATV 728

Query: 290 TIAQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFLSNWLNVLPPLVNYFITI 342
           TI Q FL S LF +AN+AAA GGIIYF+LYLPY     W + +   +  F+++
Sbjct: 729 TILQCFLISTLFSRANLAAACGGIIYFMLYLPYVLCVAWQDYVGFTLKIFVSL 781

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	465
ZFIN|ZDB-GENE-030131-9826	2282	abca1b "ATP-binding cassette,	0.563	0.114	0.426	4.8e-70
UNIPROTKB|F1SP55	1293	ABCA1 "Uncharacterized protein	0.563	0.202	0.426	7.6e-70
UNIPROTKB|F1MG24	2261	ABCA1 "Uncharacterized protein	0.563	0.115	0.418	5.2e-69
ZFIN|ZDB-GENE-031006-12	2268	abca1a "ATP-binding cassette,	0.563	0.115	0.415	6.7e-69
UNIPROTKB|E2QUX2	2262	ABCA1 "Uncharacterized protein	0.563	0.115	0.422	6.7e-69
MGI|MGI:99607	2261	Abca1 "ATP-binding cassette, s	0.563	0.115	0.418	8.6e-69
UNIPROTKB|F1LNL3	2258	Abca1 "Protein Abca1" [Rattus	0.563	0.116	0.422	1.1e-68
UNIPROTKB|F1LRX9	2258	Abca1 "Protein Abca1" [Rattus	0.563	0.116	0.422	1.1e-68
UNIPROTKB|O95477	2261	ABCA1 "ATP-binding cassette su	0.563	0.115	0.418	1.8e-68
UNIPROTKB|E1C619	2225	E1C619 "Uncharacterized protei	0.597	0.124	0.382	2e-67

ZFIN|ZDB-GENE-030131-9826 abca1b "ATP-binding cassette, sub-family A (ABC1), member 1B" [Danio rerio (taxid:7955)]

 Score = 595 (214.5 bits), Expect = 4.8e-70, Sum P(2) = 4.8e-70
 Identities = 113/265 (42%), Positives = 175/265 (66%)

Query:    53 NDTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQ-PGYD-KL 110
             N+T +++  + + ++C++ +K+ P +      N++   +DN   WA I F   P    +L
Sbjct:   492 NETDQAIMSISRFMECVNLDKLEPVSTEEKLVNESMSLLDNRKFWAGIVFLDIPSNSSEL 551

Query:   111 KPTLTYSIRMSTALIGDTY-ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEH 169
              P + Y IRM    +  T  I D ++   PR+ P  DL+YI  GF+YLQD+VE SII+  
Sbjct:   552 PPNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFSYLQDVVEHSIIRAV 611

Query:   170 TGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLK 229
             TG +   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ ++I K +VYEK+ RLK
Sbjct:   612 TGSKEKTGVYIQQMPYPCYVDDIFLRIMSRSMPLFMTLAWMYSVAIIIKGVVYEKEARLK 671

Query:   230 EMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVA 289
             E MR+MGL NG+ W +WFI S++ ++I+A LL LLL  G+++ +S+P ++F+FL SF V 
Sbjct:   672 ETMRIMGLDNGILWFSWFISSLIPLLISAGLLVLLLKMGNLLPYSDPGVVFLFLGSFAVV 731

Query:   290 TIAQSFLYSVLFDQANIAAASGGII 314
             TI Q FL S  F +AN+AAA GGII
Sbjct:   732 TIMQCFLISTAFARANLAAACGGII 756

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1SP55 ABCA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 596 (214.9 bits), Expect = 7.6e-70, Sum P(2) = 7.6e-70
 Identities = 113/265 (42%), Positives = 174/265 (65%)

Query:    53 NDTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFT--QPGYDKL 110
             N+T +++Q + + ++C++ NKI P    A   N +   +D    WA I F    PG  +L
Sbjct:   492 NETNQAVQTISRFMECVNLNKIEPVATEARLINKSMELLDERKFWAGIVFPGITPGSVEL 551

Query:   111 KPTLTYSIRMSTALIGDTY-ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEH 169
                + Y IRM    +  T  I D ++   PR+ P  D++Y+  GF YLQD+VEQ+II+  
Sbjct:   552 PHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFTYLQDVVEQAIIRVL 611

Query:   170 TGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLK 229
             TG E   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ ++I K IVYEK+ RLK
Sbjct:   612 TGVEKKTGVYMQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLK 671

Query:   230 EMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVA 289
             E MR+MGL NG+ W +WFI S++ ++++A LL ++L  G+++ +S+P ++F+FL  F V 
Sbjct:   672 ETMRIMGLDNGILWFSWFISSLIPLLVSAGLLVVILKLGNLLPYSDPSVVFVFLSVFAVV 731

Query:   290 TIAQSFLYSVLFDQANIAAASGGII 314
             TI Q FL S LF +AN+AAA GGII
Sbjct:   732 TILQCFLISTLFSRANLAAACGGII 756

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|F1MG24 ABCA1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 597 (215.2 bits), Expect = 5.2e-69, Sum P(2) = 5.2e-69
 Identities = 111/265 (41%), Positives = 174/265 (65%)

Query:    53 NDTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFT--QPGYDKL 110
             N+T +++Q + + ++C++ NK+ P        N +   +D    WA + FT   PG  +L
Sbjct:   489 NETNQAIQTISRFMECVNLNKLEPVATEVLLINKSMELLDERKFWAGVVFTGIAPGSVEL 548

Query:   111 KPTLTYSIRMSTALIGDTY-ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEH 169
                + Y IRM    +  T  I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  
Sbjct:   549 PHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVL 608

Query:   170 TGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLK 229
             TG E   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ ++I K IVYEK+ RLK
Sbjct:   609 TGTEKKTGVYMQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLK 668

Query:   230 EMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVA 289
             E MR+MGL NG+ W +WFI S++ ++++A LL ++L  G+++ +S+P ++F+FL  F   
Sbjct:   669 ETMRIMGLDNGILWFSWFISSLIPLLVSAGLLVVILKLGNLLPYSDPSVVFVFLSVFATV 728

Query:   290 TIAQSFLYSVLFDQANIAAASGGII 314
             TI Q FL S LF +AN+AAA GGII
Sbjct:   729 TILQCFLISTLFSRANLAAACGGII 753

GO:0071300 "cellular response to retinoic acid" evidence=IEA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0060155 "platelet dense granule organization" evidence=IEA

GO:0055098 "response to low-density lipoprotein particle stimulus" evidence=IEA

GO:0055091 "phospholipid homeostasis" evidence=IEA

GO:0050702 "interleukin-1 beta secretion" evidence=IEA

GO:0045335 "phagocytic vesicle" evidence=IEA

GO:0045332 "phospholipid translocation" evidence=IEA

GO:0045121 "membrane raft" evidence=IEA

GO:0043691 "reverse cholesterol transport" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IEA

GO:0034616 "response to laminar fluid shear stress" evidence=IEA

GO:0034380 "high-density lipoprotein particle assembly" evidence=IEA

GO:0034188 "apolipoprotein A-I receptor activity" evidence=IEA

GO:0034186 "apolipoprotein A-I binding" evidence=IEA

GO:0033700 "phospholipid efflux" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IEA

GO:0032489 "regulation of Cdc42 protein signal transduction" evidence=IEA

GO:0032367 "intracellular cholesterol transport" evidence=IEA

GO:0031267 "small GTPase binding" evidence=IEA

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=IEA

GO:0016197 "endosomal transport" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0008509 "anion transmembrane transporter activity" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007040 "lysosome organization" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IEA

GO:0006497 "protein lipidation" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005548 "phospholipid transporter activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0002790 "peptide secretion" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

ZFIN|ZDB-GENE-031006-12 abca1a "ATP-binding cassette, sub-family A (ABC1), member 1A" [Danio rerio (taxid:7955)]

 Score = 586 (211.3 bits), Expect = 6.7e-69, Sum P(3) = 6.7e-69
 Identities = 110/265 (41%), Positives = 172/265 (64%)

Query:    53 NDTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFT--QPGYDKL 110
             N+T +++Q + + ++C++ +K+ P  +     N +   +D+   WA I F   Q     L
Sbjct:   493 NETDQAIQTISRFMECVNLDKLEPVANEERLVNKSMRLLDDRKFWAGIVFPDMQSNTSDL 552

Query:   111 KPTLTYSIRMSTALIGDTY-ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEH 169
                + Y IRM    +  T  I D ++   PR+ P  DL+YI  GF YLQD++E  II+  
Sbjct:   553 PLNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFTYLQDVIEHGIIRAL 612

Query:   170 TGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLK 229
             TG +   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ ++I K +VYEK+ RLK
Sbjct:   613 TGSKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAIIIKGVVYEKEARLK 672

Query:   230 EMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVA 289
             E MR+MGL NG+ W +WFI S++ ++I+A LL L+L  G+++ +S+P +I++FL SF V 
Sbjct:   673 ETMRIMGLDNGILWLSWFISSLIPLLISAALLVLILKMGNLLPYSDPGVIYLFLSSFAVV 732

Query:   290 TIAQSFLYSVLFDQANIAAASGGII 314
             TI Q FL S LF +AN+AAA GGII
Sbjct:   733 TIMQCFLISTLFSRANLAAACGGII 757

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E2QUX2 ABCA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 595 (214.5 bits), Expect = 6.7e-69, Sum P(2) = 6.7e-69
 Identities = 112/265 (42%), Positives = 175/265 (66%)

Query:    53 NDTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFT--QPGYDKL 110
             N+T +++Q + + ++C++ NK+ P        N +   +D    WA I FT   PG  +L
Sbjct:   490 NETDQAIQTISRFMECVNLNKLEPVATEVRLINKSMELLDERKFWAGIVFTGITPGSIEL 549

Query:   111 KPTLTYSIRMSTALIGDTY-ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEH 169
                + Y IRM    +  T  I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  
Sbjct:   550 PRHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVL 609

Query:   170 TGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLK 229
             TG E   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ ++I K IVYEK+ RLK
Sbjct:   610 TGTERKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLK 669

Query:   230 EMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVA 289
             E MR+MGL +G+ W +WFI S++ ++++A LL ++L  G+++ +S+P ++F+FL  F V 
Sbjct:   670 ETMRIMGLDSGILWFSWFISSLIPLLVSAGLLVVILKLGNLLPYSDPSVVFVFLSVFAVV 729

Query:   290 TIAQSFLYSVLFDQANIAAASGGII 314
             TI Q FL S LF +AN+AAA GGII
Sbjct:   730 TILQCFLISTLFSRANLAAACGGII 754

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

MGI|MGI:99607 Abca1 "ATP-binding cassette, sub-family A (ABC1), member 1" [Mus musculus (taxid:10090)]

 Score = 594 (214.2 bits), Expect = 8.6e-69, Sum P(2) = 8.6e-69
 Identities = 111/265 (41%), Positives = 175/265 (66%)

Query:    53 NDTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFT--QPGYDKL 110
             N+T +++Q + + ++C++ NK+ P        N +   +D    WA I FT   P   +L
Sbjct:   489 NETNQAIQTISRFMECVNLNKLEPIPTEVRLINKSMELLDERKFWAGIVFTGITPDSVEL 548

Query:   111 KPTLTYSIRMSTALIGDTY-ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEH 169
                + Y IRM    +  T  I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  
Sbjct:   549 PHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVL 608

Query:   170 TGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLK 229
             TG E   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ ++I KSIVYEK+ RLK
Sbjct:   609 TGSEKKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKSIVYEKEARLK 668

Query:   230 EMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVA 289
             E MR+MGL NG+ W +WF+ S++ ++++A LL ++L  G+++ +S+P ++F+FL  F + 
Sbjct:   669 ETMRIMGLDNGILWFSWFVSSLIPLLVSAGLLVVILKLGNLLPYSDPSVVFVFLSVFAMV 728

Query:   290 TIAQSFLYSVLFDQANIAAASGGII 314
             TI Q FL S LF +AN+AAA GGII
Sbjct:   729 TILQCFLISTLFSRANLAAACGGII 753

GO:0000166 "nucleotide binding" evidence=IEA

GO:0002790 "peptide secretion" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=ISO

GO:0005548 "phospholipid transporter activity" evidence=ISO;IMP;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISO;IDA

GO:0006497 "protein lipidation" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0007040 "lysosome organization" evidence=ISO

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO

GO:0008203 "cholesterol metabolic process" evidence=ISO;IDA

GO:0008509 "anion transmembrane transporter activity" evidence=IDA

GO:0009986 "cell surface" evidence=ISO

GO:0010875 "positive regulation of cholesterol efflux" evidence=IMP

GO:0015914 "phospholipid transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016197 "endosomal transport" evidence=ISO

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=ISO;IMP;IDA

GO:0019905 "syntaxin binding" evidence=ISO

GO:0030139 "endocytic vesicle" evidence=ISO

GO:0030301 "cholesterol transport" evidence=ISO

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=ISO

GO:0031267 "small GTPase binding" evidence=ISO

GO:0032367 "intracellular cholesterol transport" evidence=ISO

GO:0032489 "regulation of Cdc42 protein signal transduction" evidence=ISO

GO:0033344 "cholesterol efflux" evidence=ISO;IDA;IMP

GO:0033700 "phospholipid efflux" evidence=ISO;IMP;IDA

GO:0034185 "apolipoprotein binding" evidence=ISO

GO:0034186 "apolipoprotein A-I binding" evidence=ISO

GO:0034188 "apolipoprotein A-I receptor activity" evidence=ISO

GO:0034364 "high-density lipoprotein particle" evidence=ISO

GO:0034380 "high-density lipoprotein particle assembly" evidence=ISO

GO:0038027 "apolipoprotein A-I-mediated signaling pathway" evidence=ISO

GO:0042157 "lipoprotein metabolic process" evidence=IMP

GO:0042158 "lipoprotein biosynthetic process" evidence=ISO;IMP

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISO

GO:0042632 "cholesterol homeostasis" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0043691 "reverse cholesterol transport" evidence=ISO;IMP

GO:0045121 "membrane raft" evidence=ISO

GO:0045332 "phospholipid translocation" evidence=IMP

GO:0045335 "phagocytic vesicle" evidence=ISO

GO:0050702 "interleukin-1 beta secretion" evidence=ISO

GO:0055091 "phospholipid homeostasis" evidence=ISO

GO:0055099 "response to high density lipoprotein particle stimulus" evidence=IMP

GO:0060155 "platelet dense granule organization" evidence=ISO

GO:0071222 "cellular response to lipopolysaccharide" evidence=IDA

GO:0071300 "cellular response to retinoic acid" evidence=IDA

UNIPROTKB|F1LNL3 Abca1 "Protein Abca1" [Rattus norvegicus (taxid:10116)]

 Score = 593 (213.8 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
 Identities = 112/265 (42%), Positives = 173/265 (65%)

Query:    53 NDTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFT--QPGYDKL 110
             N+T +++Q + + ++C++ NK+ P        N +   +D    WA I FT   P   +L
Sbjct:   489 NETNQAIQTISRFMECVNLNKLEPIPTEVRLINKSMELLDERKFWAGIVFTGITPDSVEL 548

Query:   111 KPTLTYSIRMSTALIGDTY-ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEH 169
                + Y IRM    +  T  I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  
Sbjct:   549 PHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVL 608

Query:   170 TGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLK 229
             TG E   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ ++I KSIVYEK+ RLK
Sbjct:   609 TGTEKKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKSIVYEKEARLK 668

Query:   230 EMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVA 289
             E MR+MGL NG+ W +WFI S++ ++++A LL ++L  G ++ +S+P ++F+FL  F V 
Sbjct:   669 ETMRIMGLDNGILWFSWFISSLIPLLVSAGLLVIILKLGDLLPYSDPSVVFVFLSVFAVV 728

Query:   290 TIAQSFLYSVLFDQANIAAASGGII 314
             TI Q FL S LF + N+AAA GGII
Sbjct:   729 TILQCFLISTLFSRTNLAAACGGII 753

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|F1LRX9 Abca1 "Protein Abca1" [Rattus norvegicus (taxid:10116)]

 Score = 593 (213.8 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
 Identities = 112/265 (42%), Positives = 173/265 (65%)

Query:    53 NDTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFT--QPGYDKL 110
             N+T +++Q + + ++C++ NK+ P        N +   +D    WA I FT   P   +L
Sbjct:   489 NETNQAIQTISRFMECVNLNKLEPIPTEVRLINKSMELLDERKFWAGIVFTGITPDSVEL 548

Query:   111 KPTLTYSIRMSTALIGDTY-ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEH 169
                + Y IRM    +  T  I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  
Sbjct:   549 PHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVL 608

Query:   170 TGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLK 229
             TG E   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ ++I KSIVYEK+ RLK
Sbjct:   609 TGTEKKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKSIVYEKEARLK 668

Query:   230 EMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVA 289
             E MR+MGL NG+ W +WFI S++ ++++A LL ++L  G ++ +S+P ++F+FL  F V 
Sbjct:   669 ETMRIMGLDNGILWFSWFISSLIPLLVSAGLLVIILKLGDLLPYSDPSVVFVFLSVFAVV 728

Query:   290 TIAQSFLYSVLFDQANIAAASGGII 314
             TI Q FL S LF + N+AAA GGII
Sbjct:   729 TILQCFLISTLFSRTNLAAACGGII 753

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|O95477 ABCA1 "ATP-binding cassette sub-family A member 1" [Homo sapiens (taxid:9606)]

 Score = 591 (213.1 bits), Expect = 1.8e-68, Sum P(2) = 1.8e-68
 Identities = 111/265 (41%), Positives = 174/265 (65%)

Query:    53 NDTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFT--QPGYDKL 110
             N+T ++++ + + ++C++ NK+ P        N +   +D    WA I FT   PG  +L
Sbjct:   489 NETNQAIRTISRFMECVNLNKLEPIATEVWLINKSMELLDERKFWAGIVFTGITPGSIEL 548

Query:   111 KPTLTYSIRMSTALIGDTY-ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEH 169
                + Y IRM    +  T  I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  
Sbjct:   549 PHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVL 608

Query:   170 TGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLK 229
             TG E   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++ ++I K IVYEK+ RLK
Sbjct:   609 TGTEKKTGVYMQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLK 668

Query:   230 EMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVA 289
             E MR+MGL N + W +WFI S++ ++++A LL ++L  G+++ +S+P ++F+FL  F V 
Sbjct:   669 ETMRIMGLDNSILWFSWFISSLIPLLVSAGLLVVILKLGNLLPYSDPSVVFVFLSVFAVV 728

Query:   290 TIAQSFLYSVLFDQANIAAASGGII 314
             TI Q FL S LF +AN+AAA GGII
Sbjct:   729 TILQCFLISTLFSRANLAAACGGII 753

GO:0016887 "ATPase activity" evidence=IEA

GO:0002790 "peptide secretion" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006497 "protein lipidation" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0045332 "phospholipid translocation" evidence=IEA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0071300 "cellular response to retinoic acid" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0006629 "lipid metabolic process" evidence=TAS

GO:0042157 "lipoprotein metabolic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010745 "negative regulation of macrophage derived foam cell differentiation" evidence=TAS

GO:0010887 "negative regulation of cholesterol storage" evidence=TAS

GO:0034188 "apolipoprotein A-I receptor activity" evidence=IDA

GO:0042632 "cholesterol homeostasis" evidence=IDA

GO:0008203 "cholesterol metabolic process" evidence=IDA

GO:0033700 "phospholipid efflux" evidence=IDA;IMP

GO:0055091 "phospholipid homeostasis" evidence=IMP

GO:0015485 "cholesterol binding" evidence=IC

GO:0005548 "phospholipid transporter activity" evidence=IDA

GO:0005543 "phospholipid binding" evidence=IC

GO:0043691 "reverse cholesterol transport" evidence=IMP

GO:0019905 "syntaxin binding" evidence=IPI

GO:0045121 "membrane raft" evidence=IDA

GO:0008509 "anion transmembrane transporter activity" evidence=ISS

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=IMP

GO:0005524 "ATP binding" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0016197 "endosomal transport" evidence=IDA

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0007040 "lysosome organization" evidence=IDA

GO:0032367 "intracellular cholesterol transport" evidence=IMP

GO:0033344 "cholesterol efflux" evidence=IMP;IDA

GO:0017127 "cholesterol transporter activity" evidence=IDA

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0060155 "platelet dense granule organization" evidence=IMP

GO:0050702 "interleukin-1 beta secretion" evidence=IMP

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IMP

GO:0032489 "regulation of Cdc42 protein signal transduction" evidence=IMP

GO:0034186 "apolipoprotein A-I binding" evidence=IPI

GO:0031267 "small GTPase binding" evidence=IPI

GO:0034185 "apolipoprotein binding" evidence=IPI

GO:0055098 "response to low-density lipoprotein particle stimulus" evidence=IEP

GO:0034616 "response to laminar fluid shear stress" evidence=IEP

GO:0034380 "high-density lipoprotein particle assembly" evidence=IMP

GO:0038027 "apolipoprotein A-I-mediated signaling pathway" evidence=IDA

UNIPROTKB|E1C619 E1C619 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 582 (209.9 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
 Identities = 108/282 (38%), Positives = 180/282 (63%)

Query:    37 DSFFSDQNLTSS-LNFLNDTQESMQYVVQLLQCIDFNKIVPYNDSATAENDAFLRMDNNT 95
             + F +D  +  + ++  N+T  ++Q + + ++C++ +K+ P        N +   +D   
Sbjct:   475 EEFEADNGMVYTWVDAFNETDRAIQTISRFMECVNLDKLEPVATEVRLINKSLELLDERR 534

Query:    96 LWALINFTQ--PGYDKLKPTLTYSIRMSTALIGDTY-ISDRFYTLDPRSRPLYDLKYITF 152
              WA + FT+  P   +L   + Y IRM    +  T  I D ++   PR+ P  D++Y+  
Sbjct:   535 FWAGVVFTEIAPNSTELPQHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWG 594

Query:   153 GFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFA 212
             GF YLQD+VEQ+II+  TG E   G+ +QQ PYPCY++D F++ +S++ PLFM L+W+++
Sbjct:   595 GFTYLQDVVEQAIIRVQTGTEKKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYS 654

Query:   213 CSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQ 272
              ++I K IVYEK+ RLKE MR+MGL NG+ W +WFI S++ ++++A LL L+L   +++ 
Sbjct:   655 VAVIIKGIVYEKEARLKETMRIMGLDNGILWLSWFISSLIPLLMSAGLLVLILKVRNLLP 714

Query:   273 HSNPVIIFIFLVSFCVATIAQSFLYSVLFDQANIAAASGGII 314
             +S+P ++F+FL  F + TI Q FL S +F +AN+AAA GGI+
Sbjct:   715 YSDPSVVFVFLSIFGIVTILQCFLISTVFSRANLAAACGGIV 756

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	465
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	4e-75
pfam12698	278	pfam12698, ABC2_membrane_3, ABC-2 family transport	1e-11
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	3e-07

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score =  256 bits (655), Expect = 4e-75
 Identities = 124/327 (37%), Positives = 188/327 (57%), Gaps = 8/327 (2%)

Query: 10  GRQAIRNEILRSVGNQSQTYNAALNFFDSFFSDQNLTSSLNF-----LNDTQESMQYVVQ 64
               +++ I R +G +  T  A LNF  +   ++      NF      N T   ++   Q
Sbjct: 456 QNPTVKDFINRQLGEEGITAEAVLNFLYNGPREKQADDMTNFDWRDIFNITDRFLRLANQ 515

Query: 65  LLQCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINF--TQPGYDKLKPTLTYSIRMST 122
            L+C+  +K   Y+D       A   ++ N  WA + F    P    L P + Y IRM  
Sbjct: 516 YLECLVLDKFESYDDEVQLTQRALSLLEENRFWAGVVFPDMYPWTSSLPPHVKYKIRMDI 575

Query: 123 ALIGDT-YISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQ 181
            ++  T  I DR++   PR+ P+ D +YI  GFAYLQDMVEQ I +     E   GI LQ
Sbjct: 576 DVVEKTNKIKDRYWDSGPRADPVEDFRYIWGGFAYLQDMVEQGITRSQMQAEPPVGIYLQ 635

Query: 182 QFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGV 241
           Q PYPC+++D F+  +++ FP+FMVL+W+++ SM  KSIV EK+ RLKE ++  G+SN V
Sbjct: 636 QMPYPCFVDDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAV 695

Query: 242 HWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVATIAQSFLYSVLF 301
            W  WF+DS  +M ++  LL++ +++G ++ +S+P I+F+FL++F  ATI Q FL S  F
Sbjct: 696 IWCTWFLDSFSIMSMSIFLLTIFIMHGRILHYSDPFILFLFLLAFSTATIMQCFLLSTFF 755

Query: 302 DQANIAAASGGIIYFLLYLPYPFLSNW 328
            +A++AAA  G+IYF LYLP+     W
Sbjct: 756 SKASLAAACSGVIYFTLYLPHILCFAW 782

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 1/122 (0%)

Query: 201 FPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVL 260
             L + L  +    +I  SIV EK+ R+KE + V G+S   +     +   +++ +  +L
Sbjct: 98  LGLLLFLLILIGALIIALSIVEEKESRIKERLLVSGVSPLKYLLGKIL-GDLLVGLIQLL 156

Query: 261 LSLLLVYGHVIQHSNPVIIFIFLVSFCVATIAQSFLYSVLFDQANIAAASGGIIYFLLYL 320
           + LLL++G  I   N +++ +  + + +A IA   L   LF  +  A     I+  LL  
Sbjct: 157 IILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAILVISILILLLSG 216

Query: 321 PY 322
            +
Sbjct: 217 FF 218

This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 52.7 bits (126), Expect = 3e-07
 Identities = 26/65 (40%), Positives = 37/65 (56%)

Query: 363  DVTQLIRSFLPAANIHKISGSEVTYVLPQDPASMGAYVSLFESLSENRAKLGIDSYGISD 422
            ++  L+   +P A + +  G E+ ++LP       AY SLF  L E  A LG+ S+GISD
Sbjct: 1207 ELMDLVYHHVPEAKLVECIGQELIFLLPNKNFKQRAYASLFRELEETLADLGLSSFGISD 1266

Query: 423  TSLEE 427
            T LEE
Sbjct: 1267 TPLEE 1271

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	465
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.43
PF12698	344	ABC2_membrane_3: ABC-2 family transporter protein;	99.26
KOG0059|consensus	885		99.12
KOG0059|consensus	885		98.38
TIGR03518	240	ABC_perm_GldF gliding motility-associated ABC tran	97.3
TIGR01247	236	drrB daunorubicin resistance ABC transporter membr	97.05
TIGR00025	232	Mtu_efflux ABC transporter efflux protein, DrrB fa	96.77
TIGR01291	253	nodJ ABC-2 type transporter, NodJ family. Nearly a	96.42
TIGR01248	152	drrC daunorubicin resistance protein C. The model	96.34
TIGR03861	253	phenyl_ABC_PedC alcohol ABC transporter, permease	96.28
COG1668	407	NatB ABC-type Na+ efflux pump, permease component	96.23
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	96.07
PF12679	277	ABC2_membrane_2: ABC-2 family transporter protein	95.92
COG0842	286	ABC-type multidrug transport system, permease comp	95.59
PLN03211	659	ABC transporter G-25; Provisional	95.32
TIGR03062	208	pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa	94.43
PF12730	232	ABC2_membrane_4: ABC-2 family transporter protein	94.08
PF03379	215	CcmB: CcmB protein; InterPro: IPR003544 Within mit	93.85
PLN03140	1470	ABC transporter G family member; Provisional	93.38
PLN03140	1470	ABC transporter G family member; Provisional	92.85
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	92.42
COG1277	278	NosY ABC-type transport system involved in multi-c	91.23
KOG0061|consensus	613		91.14
PF01061	210	ABC2_membrane: ABC-2 type transporter; InterPro: I	90.93
TIGR01190	211	ccmB heme exporter protein CcmB. This model descri	90.57
PRK15066	257	inner membrane transport permease; Provisional	90.49
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	87.35
TIGR03733	248	lanti_perm_MutG lantibiotic protection ABC transpo	85.66
PF13346	206	ABC2_membrane_5: ABC-2 family transporter protein	83.98
KOG0065|consensus	1391		80.7

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=4.7e-64  Score=586.61  Aligned_cols=389  Identities=33%  Similarity=0.601  Sum_probs=351.2

Q ss_pred             hhHHHHHHHhhcCCCCCchhHHhhcccc-----cCCCCCCCCchhhhhhHHHHHHHHHHHhccccCCceeecCCHHHHHH
Q psy7379          11 RQAIRNEILRSVGNQSQTYNAALNFFDS-----FFSDQNLTSSLNFLNDTQESMQYVVQLLQCIDFNKIVPYNDSATAEN   85 (465)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~l~~f~~~-----~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~f~se~~m~~   85 (465)
                      ||+|++|+++||+++.|++++|.+||++     +.......+|+++++.++++++.+++.++|+.+||+++++||++|++
T Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~d~~~~~~~~~~~~~  536 (2272)
T TIGR01257       457 NPTVKDFINRQLGEEGITAEAVLNFLYNGPREKQADDMTNFDWRDIFNITDRFLRLANQYLECLVLDKFESYDDEVQLTQ  536 (2272)
T ss_pred             ChhhhhHHhhcCCCccccHHHHHHHhccCCccccCCCCccccHHHHHHHHHHHHHHHHHHHHHeeccceecCCCHHHHHH
Confidence            7899999999999999999999999987     23456689999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCceEEEEEEcCC--CCCCCCCeeEEEEEecCcccC-CcccccCccCCCCCCCCCCCcccccccHHHHHHHHH
Q psy7379          86 DAFLRMDNNTLWALINFTQP--GYDKLKPTLTYSIRMSTALIG-DTYISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVE  162 (465)
Q Consensus        86 ~~~~~~~~~~~~agIvF~~~--~~~~~p~~~~Y~IR~~~~~~~-t~~l~~~~~~~gpr~~~~~d~~Y~~~GFl~lQ~~id  162 (465)
                      ++.++.+++.+||||+|++.  +..++|++++|+||||.+..+ |+++++.+|.+|||+++..|++|+++||++||++||
T Consensus       537 ~~~~l~~~~~~~agI~F~~~~~~~~~~p~~v~y~IR~~~~~~~~t~~~~~~~w~~g~~~~~~~~~~Y~~~GFl~lQ~ai~  616 (2272)
T TIGR01257       537 RALSLLEENRFWAGVVFPDMYPWTSSLPPHVKYKIRMDIDVVEKTNKIKDRYWDSGPRADPVEDFRYIWGGFAYLQDMVE  616 (2272)
T ss_pred             HHHHHhhcCCeEEEEEeCCCcccccCCCCceEEEEecCccccCcchhhccccccCCCCCCccccccHHHhhHHHHHHHHH
Confidence            99999999999999999753  345789999999999999877 888889999999999888789999999999999999


Q ss_pred             HHHHHHhhCCCCCcceeeeecCCCcccchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhcCCCchHH
Q psy7379         163 QSIIQEHTGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVH  242 (465)
Q Consensus       163 ~aii~~~~~~~~~~~v~~q~~P~p~~~~d~f~~~~~~~~pl~~~l~~~~~~~~~v~~iV~EKe~~lke~m~imGl~~~~y  242 (465)
                      ++|++..++....+++++|+||||||.+|.|+..++.++|++++++|++++..+++.||.|||+|+||+||||||++|+|
T Consensus       617 ~aii~~~~~~~~~~~v~~q~~P~P~y~~d~~l~~~~~~~pl~~~la~~~~~~~lv~~iV~EKE~rlKE~MkiMGL~~~~~  696 (2272)
T TIGR01257       617 QGITRSQMQAEPPVGIYLQQMPYPCFVDDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVI  696 (2272)
T ss_pred             HHHHHhhcCCCcccceeeeeCCCCCeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHH
Confidence            99999988765578899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHhhhh
Q psy7379         243 WTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVATIAQSFLYSVLFDQANIAAASGGIIYFLLYLPY  322 (465)
Q Consensus       243 wlswfi~~~~~~li~~~l~~~il~~~~i~~~s~~~~lf~~l~~y~~s~i~f~fliS~fF~~a~~A~~~~~li~~~~~lp~  322 (465)
                      |+|||+.+++.+++++++++++++.+.+++++|++++|+++++|++++|+||||+|+||+|+++|+++++++||++++|+
T Consensus       697 w~sWfi~~~~~~~i~~~l~~~il~~~~~~~~s~~~~lfl~~~~y~~s~I~~~fliS~fFska~~A~~~~~li~f~~~lp~  776 (2272)
T TIGR01257       697 WCTWFLDSFSIMSMSIFLLTIFIMHGRILHYSDPFILFLFLLAFSTATIMQCFLLSTFFSKASLAAACSGVIYFTLYLPH  776 (2272)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCceeecCChHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888888877899999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccccCCCcccEEEeeecC----------------CCC--CCCCCCCCCCCCchhHHHHHHhhcCCceeccccccE
Q psy7379         323 PFLSNWLNVLPPLVNYFITIPQD----------------HNH--TDHSSNQPSSDPEPDVTQLIRSFLPAANIHKISGSE  384 (465)
Q Consensus       323 ~~~~~~~~~l~~g~gy~lsl~~~----------------~~~--~~~~s~~~~~~~~~~v~~~v~~~ip~a~l~~~~g~e  384 (465)
                      .++..+++.++.+.+..+|+.+.                +.|  |++..+.+..++...+...+.+++-|+.++..+++|
T Consensus       777 ~~~~~~~~~~~~~~~~~~sL~sp~af~~g~~~i~~~e~~~~G~~w~n~~~~~~~~d~~s~~~~~~ml~~d~~lY~lL~~Y  856 (2272)
T TIGR01257       777 ILCFAWQDRMTADLKTAVSLLSPVAFGFGTEYLVRFEEQGLGLQWSNIGNSPLEGDEFSFLLSMKMMLLDAALYGLLAWY  856 (2272)
T ss_pred             HHHhhcccccCHHHHHHHHhcCHHHHHHHHHHHHHHhhhCCCcccccccccccCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            98888888888888887777763                112  222222222334457888888999999999999999


Q ss_pred             EEEEcCCCCCCcchH
Q psy7379         385 VTYVLPQDPASMGAY  399 (465)
Q Consensus       385 l~y~LP~~~~~~~~f  399 (465)
                      ++-++|.++++++++
T Consensus       857 ld~V~PgeyG~~kpw  871 (2272)
T TIGR01257       857 LDQVFPGDYGTPLPW  871 (2272)
T ss_pred             HhhcCcCCCCCCCCc
Confidence            999999999975443

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.43  E-value=2.4e-12  Score=153.53  Aligned_cols=156  Identities=14%  Similarity=0.203  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHHHHhhCCCC-----CcceeeeecCCCcccchhH---HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7379         154 FAYLQDMVEQSIIQEHTGRES-----TPGIVLQQFPYPCYIEDQF---IKAVSKTFPLFMVLSWVFACSMICKSIVYEKQ  225 (465)
Q Consensus       154 Fl~lQ~~id~aii~~~~~~~~-----~~~v~~q~~P~p~~~~d~f---~~~~~~~~pl~~~l~~~~~~~~~v~~iV~EKe  225 (465)
                      ....-+.+++|+++...++..     .+.+...++|++.......   .......+++++++++.+..+.++..+|.||+
T Consensus      1627 ~p~~lN~l~NaiLr~~~~~~~~~~~~~I~v~N~Plp~t~~~~~~~~~~~~~~~~~iai~ii~~~sfi~asfv~~~V~ER~ 1706 (2272)
T TIGR01257      1627 LVSFLNVAHNAILRASLPKDRDPEEYGITVISQPLNLTKEQLSEITVLTTSVDAVVAICVIFAMSFVPASFVLYLIQERV 1706 (2272)
T ss_pred             HHHHHHHHHHHHHHHhcccccCCccceEEEEecCCCCchhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHheeeehHHh
Confidence            445569999999998654321     2334444555443221111   11234466888999999999999999999999


Q ss_pred             HhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7379         226 ERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYG---HVIQHSNPVIIFIFLVSFCVATIAQSFLYSVLFD  302 (465)
Q Consensus       226 ~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~~---~i~~~s~~~~lf~~l~~y~~s~i~f~fliS~fF~  302 (465)
                      +|.|+++.++|++..+||+|.|+++++.++++++++++++...   .+....+...+++++++||+|.|.++|++|.+|+
T Consensus      1707 skaK~lQ~vSGv~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~~~~~l~~~~lll~lyG~a~ip~tYl~SflF~ 1786 (2272)
T TIGR01257      1707 NKAKHLQFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYTSPENLPALVALLMLYGWAVIPMMYPASFLFD 1786 (2272)
T ss_pred             hhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999988887766532   2333457778899999999999999999999999


Q ss_pred             ccchhhH
Q psy7379         303 QANIAAA  309 (465)
Q Consensus       303 ~a~~A~~  309 (465)
                      ++..|.+
T Consensus      1787 ~~~~A~~ 1793 (2272)
T TIGR01257      1787 VPSTAYV 1793 (2272)
T ss_pred             CchhHHH
Confidence            9988854

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A

Probab=99.26  E-value=4.6e-12  Score=126.36  Aligned_cols=207  Identities=19%  Similarity=0.325  Sum_probs=40.1

Q ss_pred             eeecCCHHHHHHHHHhhcCCCceEEEEEEcCCCCCC---CCCeeEEEEEecCcccCCcccccCccCCCCCCCCCCCcccc
Q psy7379          74 IVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDK---LKPTLTYSIRMSTALIGDTYISDRFYTLDPRSRPLYDLKYI  150 (465)
Q Consensus        74 ~~~f~se~~m~~~~~~~~~~~~~~agIvF~~~~~~~---~p~~~~Y~IR~~~~~~~t~~l~~~~~~~gpr~~~~~d~~Y~  150 (465)
                      ...++|++++++...+    ++.-+++++++....+   ..+..++++..+...                          
T Consensus        60 ~~~~~~~~~~~~~~~~----~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------  109 (344)
T PF12698_consen   60 VVEYDSEEEAKDALKN----GKIDAIIVIPKNFSQDLLSSGESPNITVYINSSN--------------------------  109 (344)
T ss_dssp             EEECS-HHHHHHHHHH----HT-SEEEEE-TTCCCHCH-TT--ECCEEEESSSS--------------------------
T ss_pred             eeeeCCHHHHHHHHHh----CCCcEEEEcCccccccccccCCcceEEEEeeccc--------------------------
Confidence            5699999999987654    2456788887532211   112222333332211                          


Q ss_pred             cccHHHHHHHHHHHHHHHhhCCC--------CCcceeeeecCCCcccchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy7379         151 TFGFAYLQDMVEQSIIQEHTGRE--------STPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVY  222 (465)
Q Consensus       151 ~~GFl~lQ~~id~aii~~~~~~~--------~~~~v~~q~~P~p~~~~d~f~~~~~~~~pl~~~l~~~~~~~~~v~~iV~  222 (465)
                      ....-.+|+.+++ +.+...+..        ....+..+..|.....    ........++++.+.++..+..++..++.
T Consensus       110 ~~~~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  184 (344)
T PF12698_consen  110 PHSSQIIQNALSS-LLQQLNASSEGKSAIQSSNSPIPVESIPLSNPS----SSFASYLIPFILFFILLIGFSFIAMSIVE  184 (344)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHCCCGCCCCHHHT--EEEEEEEECCCH----HHCHTT-----------------------
T ss_pred             chhhhhhhccccc-cchhhhhhhhhhhhhcccccccccccccccccc----ccccccccccchhHHHHHHHHhhchhhhh
Confidence            0112456777777 655443211        1334555555442222    12234455666666666666667889999


Q ss_pred             HHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7379         223 EKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYG-HVIQHSNPVIIFIFLVSFCVATIAQSFLYSVLF  301 (465)
Q Consensus       223 EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~~-~i~~~s~~~~lf~~l~~y~~s~i~f~fliS~fF  301 (465)
                      |||+|+++.|+++|++.+.||++|++..++..++.+++++++ ..+ ..++..++..+++++++|+++.+++++++|++|
T Consensus       185 ek~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~i-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~is~~~  263 (344)
T PF12698_consen  185 EKESGTRERLLSSGVSPWSYWLSKFLAYFLVSLIQSLIIIII-IFGISGIPFGNFLLLLLLLLLFSLAFISFGFLISSFF  263 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HhhhhhhHhhhcccCCHHHHHHHHHHHHhhHHHHHHHHHHHH-HhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998887666654 221 124555888889999999999999999999999


Q ss_pred             CccchhhHHHHHHHH
Q psy7379         302 DQANIAAASGGIIYF  316 (465)
Q Consensus       302 ~~a~~A~~~~~li~~  316 (465)
                      ++.+.|..++.++++
T Consensus       264 ~~~~~~~~~~~~~~~  278 (344)
T PF12698_consen  264 KNSSTAISVASIIIL  278 (344)
T ss_dssp             ---------------
T ss_pred             hhHHHHHHHHHHHHH
Confidence            999888776666655

>KOG0059|consensus

Probab=99.12  E-value=1.3e-09  Score=123.82  Aligned_cols=156  Identities=17%  Similarity=0.311  Sum_probs=126.1

Q ss_pred             cHHHHHHHHHHHHHHHhhCCCCCcceeeeecCCCcccchhHHHH-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy7379         153 GFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYIEDQFIKA-VSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEM  231 (465)
Q Consensus       153 GFl~lQ~~id~aii~~~~~~~~~~~v~~q~~P~p~~~~d~f~~~-~~~~~pl~~~l~~~~~~~~~v~~iV~EKe~~lke~  231 (465)
                      .+..+.+..++++.+...+..    +.++.-|+|......-... .....++++.+.+++.++.++...|.||+.|.|+.
T Consensus       255 ~~~~~~~~~~n~l~~~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~e~~~~~~~~  330 (885)
T KOG0059|consen  255 TLPFLLGLGSNALRRALNLSG----ISVLNEPMPLSGAQLSLDLLADLLGALFLLFVFLLLFSVFLLSLILERQQRLRHQ  330 (885)
T ss_pred             hHHHhcchHHHHHHHhhcccc----ceeeecCcCccHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHH
Confidence            345568888899988765443    5555445555443322222 45678899999999999999999999999999999


Q ss_pred             HhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHH
Q psy7379         232 MRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVATIAQSFLYSVLFDQANIAAASG  311 (465)
Q Consensus       232 m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~~~i~~~s~~~~lf~~l~~y~~s~i~f~fliS~fF~~a~~A~~~~  311 (465)
                      |+++|+++++||+++++++++.+++..+++.+++..++.+...+..++++++++|+.+.+.+.|++|.+|+++..|.+..
T Consensus       331 ~~i~G~~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~s~i~l~y~~s~~f~~~~~~~v~~  410 (885)
T KOG0059|consen  331 QLIAGLSPSTYWLFALVWDLLLYLLILLILLIFVLIFGFFAGNNTVIILLLLLLYIRSAIPLTYILSFIFSKESTASVIL  410 (885)
T ss_pred             HHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCceeeh
Confidence            99999999999999999999999998887777766544566778899999999999999999999999999998886543


Q ss_pred             H
Q psy7379         312 G  312 (465)
Q Consensus       312 ~  312 (465)
                      .
T Consensus       411 ~  411 (885)
T KOG0059|consen  411 S  411 (885)
T ss_pred             h
Confidence            3

>KOG0059|consensus

Probab=98.38  E-value=2.9e-07  Score=104.78  Aligned_cols=108  Identities=17%  Similarity=0.204  Sum_probs=89.1

Q ss_pred             hhhhhcccccc--CCCcccEEEeeecCCCCCCCCCCCCCCCCchhHHHHHHhhcCCceeccccccEEEEEcCCCCCCcch
Q psy7379         321 PYPFLSNWLNV--LPPLVNYFITIPQDHNHTDHSSNQPSSDPEPDVTQLIRSFLPAANIHKISGSEVTYVLPQDPASMGA  398 (465)
Q Consensus       321 p~~~~~~~~~~--l~~g~gy~lsl~~~~~~~~~~s~~~~~~~~~~v~~~v~~~ip~a~l~~~~g~el~y~LP~~~~~~~~  398 (465)
                      ..+.|.....+  .+||.||.+.+.-....          + ...+...+++..|+|.+.+.+..-+.|++|.+..  ..
T Consensus       774 G~l~ciGs~q~LKsrfG~gy~l~~~~~~~~----------~-~~~v~~~~~~~~p~a~~~~~~~~~~~~~ip~~~~--~~  840 (885)
T KOG0059|consen  774 GQLRCIGSPQELKSRYGSGYTLTVRIKELP----------E-VSEVEKLLQNRFPGAVLKERHAGLLAFEIPKDEV--VS  840 (885)
T ss_pred             CeeEEecChHHHHhhcCCcEEEEEEECCCc----------c-cchHHHHHHHhCCCcchhhhhhceEEEEcccchh--hH
Confidence            34444433333  36999999988776321          1 1489999999999999999999999999998877  57


Q ss_pred             HHHHHHHHHhcccccCcccccCCcCchhhhhhcccccceeeec
Q psy7379         399 YVSLFESLSENRAKLGIDSYGISDTSLEEKWGSLQLGRKLWLF  441 (465)
Q Consensus       399 f~~lF~~Le~~~~~lgI~sygiS~TTLEEVFl~~~~~~e~~~~  441 (465)
                      ++..|..+|..++++++.+|++|+|||||||+++++..|..+.
T Consensus       841 ~~~vF~~le~~~~~~~i~dyslsq~tLe~VFi~~a~~q~~~~~  883 (885)
T KOG0059|consen  841 LSEVFLALEKAKESFGIEDYSLSQTTLEDVFLILAKTQEDDNS  883 (885)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHhhHHHHHHHHhcccccccc
Confidence            8899999999999999999999999999999999998877554

>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF

Probab=97.30  E-value=0.0085  Score=58.07  Aligned_cols=104  Identities=15%  Similarity=0.171  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHH---HHHH-hhcccccCChHH---HHHHHHHHHH
Q psy7379         216 ICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLS---LLLV-YGHVIQHSNPVI---IFIFLVSFCV  288 (465)
Q Consensus       216 ~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~---~il~-~~~i~~~s~~~~---lf~~l~~y~~  288 (465)
                      ..+.+++|||+|--|.+....++.+...++-++......++..+...   +... .+......++..   ..+..++++.
T Consensus        69 ~~~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  148 (240)
T TIGR03518        69 TMRSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGS  148 (240)
T ss_pred             HHHHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHH
Confidence            56999999999999999999999999999999988776554443111   1111 111112223433   4455668888


Q ss_pred             HHHHHHHHHHHhcCccchhhHHHHHHHHHHh
Q psy7379         289 ATIAQSFLYSVLFDQANIAAASGGIIYFLLY  319 (465)
Q Consensus       289 s~i~f~fliS~fF~~a~~A~~~~~li~~~~~  319 (465)
                      +.++.+.++|++-++...|..++..+++..+
T Consensus       149 ~~~aig~~iSsl~~~q~~a~~~~~~~~~~l~  179 (240)
T TIGR03518       149 VYTAIGLFASSLTENQIVAFIIAVFLCFLFY  179 (240)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            9999999999997777777666665555443

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein

Probab=97.05  E-value=0.022  Score=54.65  Aligned_cols=113  Identities=11%  Similarity=0.061  Sum_probs=75.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccCChHH
Q psy7379         200 TFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVY-GHVIQHSNPVI  278 (465)
Q Consensus       200 ~~pl~~~l~~~~~~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~-~~i~~~s~~~~  278 (465)
                      ..|-.+.++.+.........++.|||++.-+-+.....+.+.++++..+...+..++..+++.++... +. ........
T Consensus        50 l~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~-~~~~~~~~  128 (236)
T TIGR01247        50 LVPGIVAMTVFNMSFFSGISVIWDRQFGFLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAI-LKPSGVIP  128 (236)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHH
Confidence            34444444444444344567888999887777778899999999999999888877766554443321 22 22233444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHH
Q psy7379         279 IFIFLVSFCVATIAQSFLYSVLFDQANIAAASGGI  313 (465)
Q Consensus       279 lf~~l~~y~~s~i~f~fliS~fF~~a~~A~~~~~l  313 (465)
                      .++..++++.+..+++.+++.++++++.+..+..+
T Consensus       129 ~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~~  163 (236)
T TIGR01247       129 TLVLAFIVGVALSGLGVAIAARMDSMEGFQIIMSM  163 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            44556667788889999999998887766554443

This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family

Probab=96.77  E-value=0.064  Score=51.37  Aligned_cols=108  Identities=6%  Similarity=-0.069  Sum_probs=70.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHH
Q psy7379         200 TFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVII  279 (465)
Q Consensus       200 ~~pl~~~l~~~~~~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~~~i~~~s~~~~l  279 (465)
                      ..|...+.............++.|||++.-+.++.+.++.+.+-++..+...+..++..+++.++....++-...++...
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~i~~er~~G~l~rl~~~P~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  118 (232)
T TIGR00025        39 IPVLMALAAISTAFTGQAIAVARDRRYGALKRLGATPLPRLGILAGRSLAVVARVFLQTLILLVIGFVLGFRFAGGALTA  118 (232)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCchHHH
Confidence            33444445556666777889999999999999999999999999999776666655544333332222222222334444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCccchh
Q psy7379         280 FIFLVSFCVATIAQSFLYSVLFDQANIA  307 (465)
Q Consensus       280 f~~l~~y~~s~i~f~fliS~fF~~a~~A  307 (465)
                      ++..+++.......+.+++.+....+.+
T Consensus       119 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~  146 (232)
T TIGR00025       119 LTLGAVIIALGTALFAALGLVAGGTLQA  146 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence            4555555566666777788887655444

This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.

>TIGR01291 nodJ ABC-2 type transporter, NodJ family

Probab=96.42  E-value=0.13  Score=50.20  Aligned_cols=116  Identities=12%  Similarity=-0.015  Sum_probs=78.2

Q ss_pred             hhhhhHHHHHHHHHHH--HHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q psy7379         198 SKTFPLFMVLSWVFAC--SMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSN  275 (465)
Q Consensus       198 ~~~~pl~~~l~~~~~~--~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~~~i~~~s~  275 (465)
                      ....|-++.++.+...  ......+..|||+|.-|.+..+-++.+.+-++..+...+..++..+++.++....+..+..+
T Consensus        58 ~f~~pg~l~~~~~~~~~~~~~~~~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~g~~~~~~  137 (253)
T TIGR01291        58 AFLAAGMVATSAMTASTFETIYATFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTATLGYIEWWS  137 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence            4455655555444333  22234678899999999999999999999999998877766665544333322222233345


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHH
Q psy7379         276 PVIIFIFLVSFCVATIAQSFLYSVLFDQANIAAASGGI  313 (465)
Q Consensus       276 ~~~lf~~l~~y~~s~i~f~fliS~fF~~a~~A~~~~~l  313 (465)
                      +..++..+++++++...+++++|.+.++.+.+..+..+
T Consensus       138 ~l~~~~~~ll~~l~~~~lg~~~a~~~~~~~~~~~i~~~  175 (253)
T TIGR01291       138 LIYILPVIALTGLAFASLSMLVAALAPSYAYFAFYQSL  175 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            55556777788888999999999998777666544443

Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.

>TIGR01248 drrC daunorubicin resistance protein C

Probab=96.34  E-value=0.18  Score=45.22  Aligned_cols=86  Identities=14%  Similarity=0.137  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHH
Q psy7379         215 MICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVATIAQS  294 (465)
Q Consensus       215 ~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~~~i~~~s~~~~lf~~l~~y~~s~i~f~  294 (465)
                      .....++.|||++.-|.++.+-++.+.+.++..+...+..++.++++.++....++-...++...+.++.+..+..++++
T Consensus         7 ~~~~~i~~dr~~G~~~~l~~tP~~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~~g~~~~~~~~~~~~~~~~~~l~~~~f~   86 (152)
T TIGR01248         7 FNAIDITIDREIGLLSRLWVLPIHRASALLARIIAETIRAFIGTILILAIALALGFRFRNGVAAALLFLLIPSIFGIAFA   86 (152)
T ss_pred             HHHHHHHHHHHhHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            33457899999999999999999999999999999988888776555444322222222355545555555555555666


Q ss_pred             HHHHHh
Q psy7379         295 FLYSVL  300 (465)
Q Consensus       295 fliS~f  300 (465)
                      .+.+.+
T Consensus        87 ~l~~~~   92 (152)
T TIGR01248        87 ALVMAM   92 (152)
T ss_pred             HHHHHH
Confidence            555443

The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.

>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein

Probab=96.28  E-value=0.16  Score=49.23  Aligned_cols=114  Identities=14%  Similarity=0.067  Sum_probs=74.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccCChHH
Q psy7379         200 TFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHV-IQHSNPVI  278 (465)
Q Consensus       200 ~~pl~~~l~~~~~~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~~~i-~~~s~~~~  278 (465)
                      ..|-++.++.+.....-...++.|||++.-+.++.+-++...+-++..+...+..++..+++.++....++ .+..++..
T Consensus        62 l~pGi~~~~~~~~~~~~~~~~~~~r~~g~~~~l~~~p~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~g~~~~~~~~l~  141 (253)
T TIGR03861        62 IVPGLCCMILLFNGMQSSLSMVYDREMGSMRVLLTSPLPRPFLLFCKLLASALISLLQVYAFLAIAALVGVQPPVWGYVS  141 (253)
T ss_pred             HHHHHHHHHHHHHHHHhhhHhHHhHhcCHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchhHHH
Confidence            44444444433333334557899999999999999999999999999999888877765544333322122 11122333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHH
Q psy7379         279 IFIFLVSFCVATIAQSFLYSVLFDQANIAAASGGI  313 (465)
Q Consensus       279 lf~~l~~y~~s~i~f~fliS~fF~~a~~A~~~~~l  313 (465)
                      .+..+++..+.....++++|++..+.+.+..+..+
T Consensus       142 ~~~~~~l~~~~~~~lgl~la~l~~~~~~~~~i~~~  176 (253)
T TIGR03861       142 VLPALVLVAFMLGALGLALSNLIRQLENFAGVMNF  176 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            44455666777888999999998876665554443

Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.

>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=96.23  E-value=0.13  Score=53.82  Aligned_cols=123  Identities=15%  Similarity=0.155  Sum_probs=76.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH----------h-h
Q psy7379         200 TFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLV----------Y-G  268 (465)
Q Consensus       200 ~~pl~~~l~~~~~~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~----------~-~  268 (465)
                      ..++.+++.+++....++.+++.|||+|.-|.+..+.++...+-.+-.+...++.++...+..+.+.          . +
T Consensus       190 ~~~ll~~~~~~~~~~~~~~sva~EKe~rtlE~LLssPvSr~~ii~gKil~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~  269 (407)
T COG1668         190 LIFLLFFIPLSYAGQMVADSVAGEKERRTLEVLLSSPVSRSEIVFGKILGAALVGLTQIALWLLALTIATFLSLAVALAG  269 (407)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhccCcChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            4445555556666669999999999999999999999999999888888877776665444433330          0 0


Q ss_pred             cccccCChHHHHH---HHHHHHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHhhhh
Q psy7379         269 HVIQHSNPVIIFI---FLVSFCVATIAQSFLYSVLFDQANIAAASGGIIYFLLYLPY  322 (465)
Q Consensus       269 ~i~~~s~~~~lf~---~l~~y~~s~i~f~fliS~fF~~a~~A~~~~~li~~~~~lp~  322 (465)
                      ..+......++..   +++.=.+...+.+.+++.++++.+.|+...+-+.++..+|+
T Consensus       270 ~~~~~~~~~~l~~~~~~~l~~~l~~~~l~a~l~~~a~~~k~aq~~~~p~~~~~~~~~  326 (407)
T COG1668         270 TGLALLPAYLLLFALSLFLLGLLLYAALAAFLGAMAGSIKEAQTLISPLTFLAIIAF  326 (407)
T ss_pred             hhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHH
Confidence            0111111211111   12222223334567888899888888876663333334433

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=96.07  E-value=0.13  Score=56.77  Aligned_cols=103  Identities=15%  Similarity=0.170  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHhhhhhHhhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccccc-CChHHHHHHHHHHHHHHH
Q psy7379         215 MICKSIVYEKQERLKEMMRVMGL-SNGVHWTAWFIDSIVVMIITAVLLSLLLVY-GHVIQH-SNPVIIFIFLVSFCVATI  291 (465)
Q Consensus       215 ~~v~~iV~EKe~~lke~m~imGl-~~~~ywlswfi~~~~~~li~~~l~~~il~~-~~i~~~-s~~~~lf~~l~~y~~s~i  291 (465)
                      ..+..+..||..=.||.  ..|+ +.++|++|..+..+...++..++.+++.+. .++-.. ..++..++++++..++..
T Consensus       410 ~~~~~f~~er~v~~rE~--~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~  487 (617)
T TIGR00955       410 PVINVFTAELPVFLRET--RSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVAT  487 (617)
T ss_pred             HHHHHHHHHHHHHHHhh--cCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHH
Confidence            33556677887777765  4566 778999999999988877766666665542 122111 123344445556667778


Q ss_pred             HHHHHHHHhcCccchhhHHHHHHHHHHh
Q psy7379         292 AQSFLYSVLFDQANIAAASGGIIYFLLY  319 (465)
Q Consensus       292 ~f~fliS~fF~~a~~A~~~~~li~~~~~  319 (465)
                      ++++++++++.+...|..++++++.+..
T Consensus       488 s~~~~i~~~~~~~~~a~~~~~~~~~~~~  515 (617)
T TIGR00955       488 SFGYLISCAFSSTSMALTVGPPFVIPFL  515 (617)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence            8999999999999999998886655443

>PF12679 ABC2_membrane_2: ABC-2 family transporter protein

Probab=95.92  E-value=0.12  Score=50.19  Aligned_cols=110  Identities=23%  Similarity=0.305  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHH---HHHHHHHHH---H-H-hhcccccCChHHHHHH
Q psy7379         211 FACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMI---ITAVLLSLL---L-V-YGHVIQHSNPVIIFIF  282 (465)
Q Consensus       211 ~~~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~l---i~~~l~~~i---l-~-~~~i~~~s~~~~lf~~  282 (465)
                      +....-...+..|||+|-=|.+....++.+.+.++-++...+..+   +...+..++   . . .+.-.+..+.....+.
T Consensus        81 ~~~~l~~~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (277)
T PF12679_consen   81 FAIILASDLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLL  160 (277)
T ss_pred             HHHHHHHHHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            344555678999999999999999999999999998888777632   222111111   1 1 1111122222222222


Q ss_pred             HHHHHH---HHHHHHHHHHHhcCccchhhHHHHHHHHHHhh
Q psy7379         283 LVSFCV---ATIAQSFLYSVLFDQANIAAASGGIIYFLLYL  320 (465)
Q Consensus       283 l~~y~~---s~i~f~fliS~fF~~a~~A~~~~~li~~~~~l  320 (465)
                      .....+   ...+.++++|+++++++.|..++..++++..+
T Consensus       161 ~~~~~~~~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~  201 (277)
T PF12679_consen  161 FVLLLLAVLVFISLGLLISSLFRSSASAILASLGLLFLLFF  201 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH
Confidence            222222   44888999999999999998888877766643

>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]

Probab=95.59  E-value=0.44  Score=45.85  Aligned_cols=113  Identities=20%  Similarity=0.210  Sum_probs=70.0

Q ss_pred             hhhHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcccccCChH
Q psy7379         200 TFPLFMVLSWVFACSMIC-KSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL-VYGHVIQHSNPV  277 (465)
Q Consensus       200 ~~pl~~~l~~~~~~~~~v-~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il-~~~~i~~~s~~~  277 (465)
                      ..|-++.+..+....... ..+.+||+.+..+.+..+.++...+.++..+...+...+...++.++. ...++....++.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~  169 (286)
T COG0842          90 IVPGVILMSVLFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGSLL  169 (286)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhHHhhCcHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHH
Confidence            344444444444433333 344446999999999999999766666555555555444333333332 223345667788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hcCccchhhHHHH
Q psy7379         278 IIFIFLVSFCVATIAQSFLYSV-LFDQANIAAASGG  312 (465)
Q Consensus       278 ~lf~~l~~y~~s~i~f~fliS~-fF~~a~~A~~~~~  312 (465)
                      .+.....++.+..++++++++. ..++.+.+...+.
T Consensus       170 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~  205 (286)
T COG0842         170 LLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGN  205 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            8888888899999999997773 4455566655553

>PLN03211 ABC transporter G-25; Provisional

Probab=95.32  E-value=0.28  Score=54.58  Aligned_cols=100  Identities=9%  Similarity=0.126  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHhhhhhHhhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccc-ccCChHHHHHHHHHHHHHHH
Q psy7379         215 MICKSIVYEKQERLKEMMRVMGL-SNGVHWTAWFIDSIVVMIITAVLLSLLLVY-GHVI-QHSNPVIIFIFLVSFCVATI  291 (465)
Q Consensus       215 ~~v~~iV~EKe~~lke~m~imGl-~~~~ywlswfi~~~~~~li~~~l~~~il~~-~~i~-~~s~~~~lf~~l~~y~~s~i  291 (465)
                      ..+.....||.-=.||..  .|+ +..+|++|+.+..+...++..++.+++.+. .++- ....+++.++++++..++..
T Consensus       456 ~~~~~f~~er~v~~rE~~--~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~  533 (659)
T PLN03211        456 NSVFVFPQERAIFVKERA--SGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQ  533 (659)
T ss_pred             HHHHHHHHhhHHHHHhhh--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence            445666788988888874  455 789999999999988877777666666542 1221 12234555667778888999


Q ss_pred             HHHHHHHHhcCccchhhHHHHHHHH
Q psy7379         292 AQSFLYSVLFDQANIAAASGGIIYF  316 (465)
Q Consensus       292 ~f~fliS~fF~~a~~A~~~~~li~~  316 (465)
                      ++++++|+++.+...|..+++++..
T Consensus       534 s~g~~i~a~~~~~~~a~~~~~~~~~  558 (659)
T PLN03211        534 GLGLALGAAIMDAKKASTIVTVTML  558 (659)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999888876533

>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain

Probab=94.43  E-value=0.86  Score=42.58  Aligned_cols=99  Identities=15%  Similarity=0.176  Sum_probs=67.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccCChHH
Q psy7379         200 TFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVY-GHVIQHSNPVI  278 (465)
Q Consensus       200 ~~pl~~~l~~~~~~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~-~~i~~~s~~~~  278 (465)
                      ..|.++.++..+.. .....+..+||.|.    +....+.+.++++-.+...+..++.++++.++... .++ +..++..
T Consensus        25 ~~p~~~~~~l~~ga-~~~~~~~~~~~~~~----~~~p~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~-~~~~~~~   98 (208)
T TIGR03062        25 LAPYFLSLALFVGA-LVLNMIIPPLSRRA----LPKSARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGL-DPAHPPA   98 (208)
T ss_pred             hHHHHHHHHHHHHH-HHHHHHhccccccc----cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ccCCHHH
Confidence            55666666644333 33334556666554    35668888899999998888887776665554432 222 2236777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy7379         279 IFIFLVSFCVATIAQSFLYSVLFDQA  304 (465)
Q Consensus       279 lf~~l~~y~~s~i~f~fliS~fF~~a  304 (465)
                      +++..++.+++..+.+.+++.++++.
T Consensus        99 ~~l~~~l~~~~~~~lg~~l~~~~~~~  124 (208)
T TIGR03062        99 TFGFAILTSLTFMAIIQFLVALFGNV  124 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            88888889999999999999999754

This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.

>PF12730 ABC2_membrane_4: ABC-2 family transporter protein

Probab=94.08  E-value=2  Score=39.39  Aligned_cols=101  Identities=11%  Similarity=0.185  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccc--ccCCh---H----HHHHHHH
Q psy7379         215 MICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVY-GHVI--QHSNP---V----IIFIFLV  284 (465)
Q Consensus       215 ~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~-~~i~--~~s~~---~----~lf~~l~  284 (465)
                      .....+..|+++|.-+.+...+.+.+.++.+-++...+..++..++..++... +.++  ...+.   .    ..++..+
T Consensus        65 ~~~~~~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (232)
T PF12730_consen   65 LAALLFSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLISFLISLLIGLLFGFSGFDYSSLLQYLISYLLLFL  144 (232)
T ss_pred             HHHHHHHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHHH
Confidence            34556778999999999999999999999999888887766655443222211 1111  11121   1    1223333


Q ss_pred             HHHHHHHHHHHHHHHhcCccchhhHHHHHHHH
Q psy7379         285 SFCVATIAQSFLYSVLFDQANIAAASGGIIYF  316 (465)
Q Consensus       285 ~y~~s~i~f~fliS~fF~~a~~A~~~~~li~~  316 (465)
                      +........ +++|.++++.-.+..++.+.++
T Consensus       145 ~~~~~~~~~-~~i~~~~~~~~~~i~~~~~~~~  175 (232)
T PF12730_consen  145 LLSLFISLL-LFISSLFRNSIVAIIISILLFL  175 (232)
T ss_pred             HHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHH
Confidence            344444444 7778888875555444444333

>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []

Probab=93.85  E-value=1.6  Score=41.52  Aligned_cols=123  Identities=11%  Similarity=0.146  Sum_probs=82.3

Q ss_pred             hHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccCChHHH
Q psy7379         202 PLFMVLSWVF-ACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVY-GHVIQHSNPVII  279 (465)
Q Consensus       202 pl~~~l~~~~-~~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~-~~i~~~s~~~~l  279 (465)
                      |-.+-++..+ ....+-|....|+|++--|.+++.+.+....+++-.+...+...+..++...++.. .+ .+..++..+
T Consensus        49 ~gllWi~~lfa~~l~~~r~f~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~-~~~~~~~~~  127 (215)
T PF03379_consen   49 PGLLWIALLFASLLGLNRSFAREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFN-LPISSWPLL  127 (215)
T ss_pred             HHHHHHHHHHHHHHHhhHhHHHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CChhHHHHH
Confidence            3333333333 34445688999999999999999999999999998888888877665544433321 11 123344455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHhhhhhhh
Q psy7379         280 FIFLVSFCVATIAQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFL  325 (465)
Q Consensus       280 f~~l~~y~~s~i~f~fliS~fF~~a~~A~~~~~li~~~~~lp~~~~  325 (465)
                      .+.+.+-+.+...-+-+.|.+-.+.+.......++.+=..+|-.+.
T Consensus       128 ~~~l~lgt~gl~~igtl~aal~~~~r~~~~Ll~lL~lPl~iPvli~  173 (215)
T PF03379_consen  128 LLSLLLGTLGLAAIGTLLAALAAGARGREILLPLLLLPLLIPVLIF  173 (215)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHH
Confidence            5555555566666677777777777776677777777777776554

These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane

>PLN03140 ABC transporter G family member; Provisional

Probab=93.38  E-value=3.5  Score=50.14  Aligned_cols=96  Identities=14%  Similarity=0.064  Sum_probs=62.8

Q ss_pred             HHHHHhhhhhHhhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC--ChHHHHHHHHHHHHHHHHHHHHHH
Q psy7379         222 YEKQERLKEMMRVMG-LSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHS--NPVIIFIFLVSFCVATIAQSFLYS  298 (465)
Q Consensus       222 ~EKe~~lke~m~imG-l~~~~ywlswfi~~~~~~li~~~l~~~il~~~~i~~~s--~~~~lf~~l~~y~~s~i~f~fliS  298 (465)
                      .||.-=.||.-  .| -+.++|.+|..+..+...++..++..++.+...=+..+  .++..++++++..+...+++.+++
T Consensus      1272 ~eR~vf~REr~--~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~ 1349 (1470)
T PLN03140       1272 VERTVFYRERA--AGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTV 1349 (1470)
T ss_pred             HHHHHHHHHHh--cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444334432  33 36688899999998888877777776666531112222  233334444455778888999999


Q ss_pred             HhcCccchhhHHHHHHHHHHh
Q psy7379         299 VLFDQANIAAASGGIIYFLLY  319 (465)
Q Consensus       299 ~fF~~a~~A~~~~~li~~~~~  319 (465)
                      +++.+...|..++++++.+..
T Consensus      1350 a~~p~~~~A~~~~~~~~~~~~ 1370 (1470)
T PLN03140       1350 SLTPNQQVAAIFAAAFYGLFN 1370 (1470)
T ss_pred             HHCCcHHHHHHHHHHHHHHHH
Confidence            999999999998887655433

>PLN03140 ABC transporter G family member; Provisional

Probab=92.85  E-value=1.3  Score=53.71  Aligned_cols=94  Identities=17%  Similarity=0.131  Sum_probs=62.4

Q ss_pred             HHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccccc-CChHHHHHHHHHHHHHHHHHHH
Q psy7379         218 KSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVY-GHVIQH-SNPVIIFIFLVSFCVATIAQSF  295 (465)
Q Consensus       218 ~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~-~~i~~~-s~~~~lf~~l~~y~~s~i~f~f  295 (465)
                      ...|-.||+..+-      -+.|+|.++..+..+...++.+++..++.+. .++-+. ..++..++++++-..+..++..
T Consensus       595 ~r~vf~ker~~~~------Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~  668 (1470)
T PLN03140        595 RLPVFYKQRDLLF------HPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFR  668 (1470)
T ss_pred             ccchhHHhhhccC------cCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555554433      3779999999999998888877777666653 222221 2334444455555666677788


Q ss_pred             HHHHhcCccchhhHHHHHHHHH
Q psy7379         296 LYSVLFDQANIAAASGGIIYFL  317 (465)
Q Consensus       296 liS~fF~~a~~A~~~~~li~~~  317 (465)
                      ++++++.+...|..+++++..+
T Consensus       669 ~i~a~~~~~~~A~~~~~~~~l~  690 (1470)
T PLN03140        669 LIASVCRTMIIANTGGALVLLL  690 (1470)
T ss_pred             HHHHHcCcHHHHHHHHHHHHHH
Confidence            8999999999998888765443

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=92.42  E-value=2.3  Score=51.49  Aligned_cols=97  Identities=11%  Similarity=0.118  Sum_probs=63.9

Q ss_pred             HHHHHHHH-hhhhhHhhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccC--------ChHHHHHHHHHHH
Q psy7379         219 SIVYEKQE-RLKEMMRVMGL-SNGVHWTAWFIDSIVVMIITAVLLSLLLVY-GHVIQHS--------NPVIIFIFLVSFC  287 (465)
Q Consensus       219 ~iV~EKe~-~lke~m~imGl-~~~~ywlswfi~~~~~~li~~~l~~~il~~-~~i~~~s--------~~~~lf~~l~~y~  287 (465)
                      ..+.||.. -.||.  ..|+ +..+|.+|..+..+...++.+++..++.+. .++-...        .++..+++++++.
T Consensus      1150 ~f~~~r~~~~~RE~--~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~ 1227 (1394)
T TIGR00956      1150 PFVAQRDLYEVRER--PSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFF 1227 (1394)
T ss_pred             hHHHHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHH
Confidence            34455544 25664  3344 456888888888877777666665555432 1221111        1556667777778


Q ss_pred             HHHHHHHHHHHHhcCccchhhHHHHHHHHH
Q psy7379         288 VATIAQSFLYSVLFDQANIAAASGGIIYFL  317 (465)
Q Consensus       288 ~s~i~f~fliS~fF~~a~~A~~~~~li~~~  317 (465)
                      +...+++.++++++.+...|..++++++.+
T Consensus      1228 ~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~ 1257 (1394)
T TIGR00956      1228 LYFSTLGQMVISFNPNADNAAVLASLLFTM 1257 (1394)
T ss_pred             HHHHHHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence            888899999999999999999888865544

>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]

Probab=91.23  E-value=4.7  Score=39.29  Aligned_cols=110  Identities=15%  Similarity=0.210  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHH--HH-H-HhhcccccCC----hHHHHHHHHHHH
Q psy7379         216 ICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLS--LL-L-VYGHVIQHSN----PVIIFIFLVSFC  287 (465)
Q Consensus       216 ~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~--~i-l-~~~~i~~~s~----~~~lf~~l~~y~  287 (465)
                      -...+..|+|++--+.+-.--++.+..-+|-++..++..++...+..  +. + .........+    ........++|+
T Consensus        79 ~~~~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~  158 (278)
T COG1277          79 GADLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSLLYG  158 (278)
T ss_pred             ccchhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHH
Confidence            35678899999998888888888888888888877777665554443  11 1 1111212222    235666788999


Q ss_pred             HHHHHHHHHHHHhcCccchhhHHHHHHHHHHhhhhhhh
Q psy7379         288 VATIAQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFL  325 (465)
Q Consensus       288 ~s~i~f~fliS~fF~~a~~A~~~~~li~~~~~lp~~~~  325 (465)
                      ....+.++++|+.+++...|...+..+|+...+-+..+
T Consensus       159 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i  196 (278)
T COG1277         159 LVLLSISLLISSLFSSSSLALLVSIILLLLFIIAFSLI  196 (278)
T ss_pred             HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988887777666544433

>KOG0061|consensus

Probab=91.14  E-value=4.4  Score=44.80  Aligned_cols=98  Identities=9%  Similarity=0.160  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccc-cCChHHHHHHHHHHHHHHHHH
Q psy7379         216 ICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVY-GHVIQ-HSNPVIIFIFLVSFCVATIAQ  293 (465)
Q Consensus       216 ~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~-~~i~~-~s~~~~lf~~l~~y~~s~i~f  293 (465)
                      .+-....||..=.||.-.-+ -+-++|.+|+.+..+...++..++.+.+.+. .+.-+ ...+....+..++..+...++
T Consensus       408 ~i~~f~~e~~~f~rE~~~~~-Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~  486 (613)
T KOG0061|consen  408 AVPVFPQERPIFLRETSSGL-YRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESL  486 (613)
T ss_pred             HHHHhHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666654433 2678999999997777777766666555542 12211 123334444566667777788


Q ss_pred             HHHHHHhcCccchhhHHHHHH
Q psy7379         294 SFLYSVLFDQANIAAASGGII  314 (465)
Q Consensus       294 ~fliS~fF~~a~~A~~~~~li  314 (465)
                      +.+++..+++...|..++.++
T Consensus       487 ~~~i~~~~~~~~~a~~~~~~~  507 (613)
T KOG0061|consen  487 GLFISAIVPNLSLATSLGPVL  507 (613)
T ss_pred             HHHHHHhccchhheeehHHHH
Confidence            899999999998888776654

>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=90.93  E-value=0.018  Score=53.30  Aligned_cols=96  Identities=17%  Similarity=0.195  Sum_probs=72.3

Q ss_pred             HHHHHHHHhhhhhHhhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccCChHHHHHHHHHHHHHHHHHHHH
Q psy7379         219 SIVYEKQERLKEMMRVMGL-SNGVHWTAWFIDSIVVMIITAVLLSLLLVY-GHVIQHSNPVIIFIFLVSFCVATIAQSFL  296 (465)
Q Consensus       219 ~iV~EKe~~lke~m~imGl-~~~~ywlswfi~~~~~~li~~~l~~~il~~-~~i~~~s~~~~lf~~l~~y~~s~i~f~fl  296 (465)
                      ....|||++.-+..+..|+ +.+.|.++..+..++..++..+++.++... .++-.. ++...++.+++.++...+.+++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~g~~  150 (210)
T PF01061_consen   72 SISFERERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE-SFFLFLLILLLSILCSSGLGLL  150 (210)
T ss_pred             hhhhhhhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc-cchheecccccccccccccccc
Confidence            3778899999999999999 999999999999888877766555544332 122112 4567777777788888889999


Q ss_pred             HHHhcCccchhhHHHHHHH
Q psy7379         297 YSVLFDQANIAAASGGIIY  315 (465)
Q Consensus       297 iS~fF~~a~~A~~~~~li~  315 (465)
                      ++.++.+.+.|..+..++.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~  169 (210)
T PF01061_consen  151 LAALFPSFRDASAISSLIL  169 (210)
T ss_pred             cccchhhhhhhhhhhhhcc
Confidence            9999999888877666443

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane

>TIGR01190 ccmB heme exporter protein CcmB

Probab=90.57  E-value=8.6  Score=36.50  Aligned_cols=123  Identities=12%  Similarity=0.003  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHH
Q psy7379         203 LFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIF  282 (465)
Q Consensus       203 l~~~l~~~~~~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~~~i~~~s~~~~lf~~  282 (465)
                      ++.+.+..-....+=|....|+|++.-|.+.+.+.+....|++-.+...+...+..++..-++...--.+..+...+.+.
T Consensus        48 ilWva~lfa~ll~l~rlF~~d~e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~~~~~~~l~l~  127 (211)
T TIGR01190        48 IVWVGALLSSLLSLDRLFRDDFEDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLDVPAWGALALT  127 (211)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            33344444445566788899999999999999999999999988888877766655444333221001122333444444


Q ss_pred             HHHHHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHhhhhhhh
Q psy7379         283 LVSFCVATIAQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFL  325 (465)
Q Consensus       283 l~~y~~s~i~f~fliS~fF~~a~~A~~~~~li~~~~~lp~~~~  325 (465)
                      +++=..+....+=+.+.+--+.+.....-+++-+=.++|..+.
T Consensus       128 LllGt~~Ls~igtl~aALt~g~r~~~~Ll~lL~lPl~vPvLIf  170 (211)
T TIGR01190       128 LLLGTPALSFLGAIGAALTVGLKRGGLLLSLLVLPLYIPVLIF  170 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHH
Confidence            5555555555566667776666666666667777777776554

This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.

>PRK15066 inner membrane transport permease; Provisional

Probab=90.49  E-value=10  Score=36.64  Aligned_cols=96  Identities=11%  Similarity=0.095  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccccCChHHHHHHHHHHHHHHHHHH
Q psy7379         216 ICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLV-YGHVIQHSNPVIIFIFLVSFCVATIAQS  294 (465)
Q Consensus       216 ~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~-~~~i~~~s~~~~lf~~l~~y~~s~i~f~  294 (465)
                      ....++.||+.|.-|-+.+.-++.+.+-++..+...+..++..+++.++.. ..+.-. .++...+..+++-.......+
T Consensus        80 ~~~~i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~-~~~~~~l~~~ll~~~~f~~~g  158 (257)
T PRK15066         80 VASSFFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQV-HHWGIVLLTVLLTAILFSLGG  158 (257)
T ss_pred             HHHHHHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-hHHHHHHHHHHHHHHHHHHHH
Confidence            445678888877777777888999988888888776664444333322221 112211 122222232233233333346


Q ss_pred             HHHHHhcCccchhhHHHH
Q psy7379         295 FLYSVLFDQANIAAASGG  312 (465)
Q Consensus       295 fliS~fF~~a~~A~~~~~  312 (465)
                      +++|..-.+.+.+..+..
T Consensus       159 l~~a~~~~~~~~~~~i~~  176 (257)
T PRK15066        159 LINAVFAKSFDDISIIPT  176 (257)
T ss_pred             HHHHHHHccHHHHHHHHH
Confidence            777777666555554443

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=87.35  E-value=3.6  Score=49.92  Aligned_cols=95  Identities=13%  Similarity=0.098  Sum_probs=61.8

Q ss_pred             HHHHHHHhhhhhHhhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccc-cCChHHHHHHHHHHHHHHHHHHHH
Q psy7379         220 IVYEKQERLKEMMRVMG-LSNGVHWTAWFIDSIVVMIITAVLLSLLLVY-GHVIQ-HSNPVIIFIFLVSFCVATIAQSFL  296 (465)
Q Consensus       220 iV~EKe~~lke~m~imG-l~~~~ywlswfi~~~~~~li~~~l~~~il~~-~~i~~-~s~~~~lf~~l~~y~~s~i~f~fl  296 (465)
                      ...||.-=.||.  ..| -+.++|.+|..+..+...++.+++..++++. .++-. ...+++.++++++-.++..++..+
T Consensus       475 ~~~eR~i~~re~--~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~  552 (1394)
T TIGR00956       475 MYEARPIVEKHR--KYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRS  552 (1394)
T ss_pred             HHhcCcceeeec--cccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345665444544  334 4778899999999988877777666666542 12211 123344444555556667778889


Q ss_pred             HHHhcCccchhhHHHHHHHH
Q psy7379         297 YSVLFDQANIAAASGGIIYF  316 (465)
Q Consensus       297 iS~fF~~a~~A~~~~~li~~  316 (465)
                      +|+++.+...|..+++++..
T Consensus       553 i~a~~~~~~~A~~~~~~~~~  572 (1394)
T TIGR00956       553 IGAVTKTLSEAMTPAAILLL  572 (1394)
T ss_pred             HHHhcCCHHHHHHHHHHHHH
Confidence            99999999999887776443

>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family

Probab=85.66  E-value=35  Score=32.87  Aligned_cols=84  Identities=11%  Similarity=0.018  Sum_probs=52.4

Q ss_pred             HHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cccccCChHHHHHHHHHHHHHHHHH
Q psy7379         221 VYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYG-------HVIQHSNPVIIFIFLVSFCVATIAQ  293 (465)
Q Consensus       221 V~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~~-------~i~~~s~~~~lf~~l~~y~~s~i~f  293 (465)
                      -.|++.+--..+...-.+...+|+|-++...+..++++++..+++..+       .-++...+....+..++-.+..+.+
T Consensus        69 ~~E~~~~~~k~ll~~p~s~~~~~~aK~l~~~~~~~is~~l~~~~~~~g~~~i~~~~~~~~~~~l~~~~~l~~~sl~~~~l  148 (248)
T TIGR03733        69 EQEESAGNFKNLLSTTKSKYKAYLSKLLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPLSLFLIAALLLIIGSLFLYII  148 (248)
T ss_pred             HHHHHhChHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            345544444445555577899999999988777777665443333211       1122223334444556667888999


Q ss_pred             HHHHHHhcCcc
Q psy7379         294 SFLYSVLFDQA  304 (465)
Q Consensus       294 ~fliS~fF~~a  304 (465)
                      ++++|..|++.
T Consensus       149 ~l~ls~~~g~~  159 (248)
T TIGR03733       149 HLFVSFAFGMG  159 (248)
T ss_pred             HHHHHHHhCCc
Confidence            99999999863

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.

>PF13346 ABC2_membrane_5: ABC-2 family transporter protein

Probab=83.98  E-value=34  Score=31.26  Aligned_cols=85  Identities=16%  Similarity=0.341  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cCCh-HHHHHHHHHHHHHHHHHH
Q psy7379         217 CKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQ-HSNP-VIIFIFLVSFCVATIAQS  294 (465)
Q Consensus       217 v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~~~i~~-~s~~-~~lf~~l~~y~~s~i~f~  294 (465)
                      ....-.|+++|-..+...+-++...+-.|-++...+..++..++..++......+. ..+. ..+......++.+.+..+
T Consensus        53 ~~~~~~d~~~~~~~~~~slPvsr~~iV~akyl~~~i~~~~~~l~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  132 (206)
T PF13346_consen   53 MSSFSYDEKSKWNKYLNSLPVSRKEIVLAKYLFSLIIILIGSLISLIIAFISNLISGNMSFFEVILIILFGFILALIFYS  132 (206)
T ss_pred             HHHHHHHHhcChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHH
Confidence            34455688889999999999999999999999999988877665554433222222 2222 233344555555556555


Q ss_pred             HHHHHhc
Q psy7379         295 FLYSVLF  301 (465)
Q Consensus       295 fliS~fF  301 (465)
                      ..+-..+
T Consensus       133 i~lp~~~  139 (206)
T PF13346_consen  133 IFLPLYY  139 (206)
T ss_pred             HHHHHHH
Confidence            5554444

>KOG0065|consensus

Probab=80.70  E-value=21  Score=42.50  Aligned_cols=106  Identities=17%  Similarity=0.120  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccc-cCChHHHHHHHH
Q psy7379         207 LSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVY-GHVIQ-HSNPVIIFIFLV  284 (465)
Q Consensus       207 l~~~~~~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~-~~i~~-~s~~~~lf~~l~  284 (465)
                      .++.=....+-+..|.+|++.+-=      -++|++-++-.|..+..-++.+.+.+++.++ .++=+ -..++..|++++
T Consensus       506 ~~laEi~~~~~~~pv~~Khr~~~f------Y~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf  579 (1391)
T KOG0065|consen  506 NGLAEIALTFQRLPVFYKHRDLSF------YPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLF  579 (1391)
T ss_pred             HhHHHHHHHHhhcchHHHhhcccc------cChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            334444456677888888755432      4779998888888888877777666666653 12211 234556666777


Q ss_pred             HHHHHHHHHHHHHHHhcCccchhhHHHHHHHHHH
Q psy7379         285 SFCVATIAQSFLYSVLFDQANIAAASGGIIYFLL  318 (465)
Q Consensus       285 ~y~~s~i~f~fliS~fF~~a~~A~~~~~li~~~~  318 (465)
                      +...++..+--+++++......|..+|++...+.
T Consensus       580 ~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i  613 (1391)
T KOG0065|consen  580 LCQFCMSGLFRFIASLSRTLSIANLIGGILLLVL  613 (1391)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHH
Confidence            7777777777788888888888888887654433

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00