Psyllid ID: psy7405

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-------
Protein Sequence
MRAPEVHHYHPPPRGFYRPFISEYPTYPSFKSIYDDPVNPHERINIPGYRYLPISRETYGISPRNIQPHHYPHYDRPFPRVGIHGTY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccHHHccccccccEccccccHccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mrapevhhyhppprgfyrpfiseyptypsfksiyddpvnpherinipgyrylpisretygisprniqphhyphydrpfprvgihgty
Flexible Loop (DISEMBL)
mrapevhhyhppprgfyrPFISEYPTYPSFKSIYDDPVNPHERINIPGYRYLPISRETYGISPRNIQPhhyphydrpfprvgiHGTY
Low Complexity Region (SEG)
MRAPEVHHYHPPPRGFYRPFISEYPTYPSFKSIYDDPVNPHERINIPGYRYLPISRETYGISPRNIQPHHYPHYDRPFPRVGIHGTY
Disordered region (IsUnstruct)
*************RGFYRPFISEYPTYPSFKSIYDDPVNPHERINIPGYRYLPISRETYGISPRNIQPHHYPHYDRPF*********
Disordered Region (DISOPRED)
*************RGFYRPFISEYPTYPSFKSIYDDPVNPHERINIPGYRYLPISRETYGISPRNIQPHHYPHYDRPFP********
Disordered Region (DISEMBL)
MRAPEVHHYHPPPRGFYRPFISEYPTYPSFKSIYDDPVNPHERINIPGYRYLPISRETYGISPRNIQPHHYPHYDRPFPRVGIHGTY
Disordered Region (DISPRO)
**********PPPRGFYRPFISEYPTYPSFKSIYDDPVNPHERINIPGYRYLPISRETYGISPRNIQPHHYPHYDRPFPRVGI****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRAPEVHHYHPPPRGFYRPFISEYPTYPSFKSIYDDPVNPHERINIPGYRYLPISRETYGISPRNIQPHHYPHYDRPFPRVGIHGTY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
240849489	117	myofilin isoform b [Acyrthosiphon pisum]	0.862	0.641	0.714	2e-21
253735721	263	myofilin isoform a [Acyrthosiphon pisum]	0.862	0.285	0.714	3e-21
46019972	254	myofilin protein [Lethocerus indicus]	0.931	0.318	0.602	2e-18
242012311	301	conserved hypothetical protein [Pediculu	0.850	0.245	0.587	2e-13
345491370	252	PREDICTED: hypothetical protein LOC10012	0.839	0.289	0.511	1e-09
332027910	185	hypothetical protein G5I_03418 [Acromyrm	0.931	0.437	0.453	1e-09
91081837	314	PREDICTED: similar to Zeelin1 CG6803-PD	0.758	0.210	0.549	2e-09
24646989	157	myofilin, isoform A [Drosophila melanoga	0.873	0.484	0.448	2e-09
386765810	119	myofilin, isoform K [Drosophila melanoga	0.885	0.647	0.455	3e-09
33329049	175	CG6803, partial [Drosophila yakuba]	0.793	0.394	0.492	4e-09

>gi|240849489|ref|NP_001155485.1| myofilin isoform b [Acyrthosiphon pisum] gi|253735725|ref|NP_001156710.1| myofilin isoform b [Acyrthosiphon pisum] gi|239793567|dbj|BAH72895.1| ACYPI002609 [Acyrthosiphon pisum]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/77 (71%), Positives = 65/77 (84%), Gaps = 2/77 (2%)

Query: 1   MRAPEVHHYHPPPRGFYRPFIS-EYPTYPSFKSIYDDPVNPHERINIPGYRYLPISRETY 59
           MRAPE+ HYH P RG +RP +S +YPT+PS+KSIYDDP +P +RIN PGYRYLPISR+TY
Sbjct: 35  MRAPEITHYHTPGRGVFRPILSADYPTWPSYKSIYDDPKHPSDRINTPGYRYLPISRDTY 94

Query: 60  GISPRNIQPHHYPHYDR 76
           GISPRNI PH+Y H DR
Sbjct: 95  GISPRNIYPHNY-HSDR 110

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|253735721|ref|NP_001156708.1| myofilin isoform a [Acyrthosiphon pisum] gi|253735723|ref|NP_001156709.1| myofilin isoform a [Acyrthosiphon pisum] gi|239793565|dbj|BAH72894.1| ACYPI002609 [Acyrthosiphon pisum]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/77 (71%), Positives = 65/77 (84%), Gaps = 2/77 (2%)

Query: 1   MRAPEVHHYHPPPRGFYRPFIS-EYPTYPSFKSIYDDPVNPHERINIPGYRYLPISRETY 59
           MRAPE+ HYH P RG +RP +S +YPT+PS+KSIYDDP +P +RIN PGYRYLPISR+TY
Sbjct: 35  MRAPEITHYHTPGRGVFRPILSADYPTWPSYKSIYDDPKHPSDRINTPGYRYLPISRDTY 94

Query: 60  GISPRNIQPHHYPHYDR 76
           GISPRNI PH+Y H DR
Sbjct: 95  GISPRNIYPHNY-HSDR 110

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|46019972|emb|CAD59433.1| myofilin protein [Lethocerus indicus]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 63/83 (75%), Gaps = 2/83 (2%)

Query: 1   MRAPEVHHYHPPPR-GFYRPFISEYPTYPSFKSIYDDPVNPHERINIPGYRYLPISRETY 59
           +RAPE  +Y   PR G +RP +S+YPT+P+ KSIYDDP++  +RI +PGYRYLPISRE Y
Sbjct: 58  IRAPEALYYSRYPRSGLFRPLLSDYPTWPNIKSIYDDPLHAADRITVPGYRYLPISREIY 117

Query: 60  GISPRNIQPHHYPHYDRPFPRVG 82
           G+S RNI PHHY   DR +PR G
Sbjct: 118 GLSQRNIYPHHYSSVDR-YPRHG 139

Source: Lethocerus indicus

Species: Lethocerus indicus

Genus: Lethocerus

Family: Belostomatidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012311|ref|XP_002426876.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212511105|gb|EEB14138.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/80 (58%), Positives = 56/80 (70%), Gaps = 6/80 (7%)

Query: 1   MRAPEVHHYHPPPRGFYRPFI-SEYPTY--PSFKSIYDDPVNPHERINIPGYRYLPISRE 57
           MRAPE       P G +RP + SE+P Y  P  KSIYDDP++ H+R+  PGYRY P+SRE
Sbjct: 35  MRAPESSRR---PYGIFRPLLTSEFPDYAWPHSKSIYDDPIHAHDRVTSPGYRYDPVSRE 91

Query: 58  TYGISPRNIQPHHYPHYDRP 77
           TYG+SPRNI PHHYP   RP
Sbjct: 92  TYGMSPRNIYPHHYPTRYRP 111

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345491370|ref|XP_001604500.2| PREDICTED: hypothetical protein LOC100120906 [Nasonia vitripennis]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 51/84 (60%), Gaps = 11/84 (13%)

Query: 1   MRAPEVHHYHPPPRGFYRPFISEYPTY-----PSFKSIYDDPVNPHERINIPGYRYLPIS 55
           MRAPE  H    PRG +R   S+YP       P  KSIYDDP++  +RIN PGYRYLP+ 
Sbjct: 38  MRAPEHTHR---PRGIFR---SDYPELHSSWNPFGKSIYDDPIHAADRINTPGYRYLPVH 91

Query: 56  RETYGISPRNIQPHHYPHYDRPFP 79
           RE YG SPR + PH Y   +R  P
Sbjct: 92  REIYGYSPRQLYPHQYKPVERFVP 115

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027910|gb|EGI67965.1| hypothetical protein G5I_03418 [Acromyrmex echinatior]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 54/86 (62%), Gaps = 5/86 (5%)

Query: 1   MRAPEVHHYHPPPRGFYRPFISEY--PTYPSFKSIYDDPVNPHERINIPGYRYLPISRET 58
           +RAPE  H    PRG +R    E   P++P  KSI+++P++  +RIN+PGYRYLP+ RE 
Sbjct: 38  IRAPEHTHR---PRGIFRSDFPELHSPSWPFGKSIFENPIHAADRINVPGYRYLPVHREI 94

Query: 59  YGISPRNIQPHHYPHYDRPFPRVGIH 84
           YG SPR + PH Y   +R  P +  H
Sbjct: 95  YGYSPRQLYPHQYKPVERFTPGITDH 120

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91081837|ref|XP_975727.1| PREDICTED: similar to Zeelin1 CG6803-PD isoform 2 [Tribolium castaneum] gi|270005020|gb|EFA01468.1| hypothetical protein TcasGA2_TC007015 [Tribolium castaneum]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 49/71 (69%), Gaps = 5/71 (7%)

Query: 10  HPPPRGFYRPFISEYPT----YPSFKSIYDDPVNPHERINIPGYRYLPISRETYGISPRN 65
           H  PRG +RP IS+ P     +P  KSIYDDP++  ERI++PGYRY P+ R+TYG SPR 
Sbjct: 42  HTRPRGIFRP-ISDLPELGSGWPFGKSIYDDPIHAGERIHVPGYRYDPLHRDTYGYSPRP 100

Query: 66  IQPHHYPHYDR 76
           I PH+Y   DR
Sbjct: 101 IYPHNYGSLDR 111

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24646989|ref|NP_731971.1| myofilin, isoform A [Drosophila melanogaster] gi|281361780|ref|NP_001163610.1| myofilin, isoform G [Drosophila melanogaster] gi|442619143|ref|NP_001262584.1| myofilin, isoform N [Drosophila melanogaster] gi|7299961|gb|AAF55134.1| myofilin, isoform A [Drosophila melanogaster] gi|224922856|gb|ACN67105.1| MIP06926p [Drosophila melanogaster] gi|272476979|gb|ACZ94906.1| myofilin, isoform G [Drosophila melanogaster] gi|440217442|gb|AGB95965.1| myofilin, isoform N [Drosophila melanogaster]

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 1   MRAPEVHHYHPPPRGFYRPFISEYPTYPSFKSIYDDPVNPHERINIPGYRYLPISRETYG 60
           ++  E    H  PR   RP+ S Y   PS++SIYD+P   +ER+   GYRYLP+SR+TYG
Sbjct: 29  LKGSEDIRAHEAPRAS-RPY-SSYLDSPSYRSIYDEPATANERVQSSGYRYLPVSRDTYG 86

Query: 61  ISPRNIQPHHYPHYDRPF 78
            SPR I  HHY    + +
Sbjct: 87  YSPRAIYDHHYSRTKKAW 104

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386765810|ref|NP_001247112.1| myofilin, isoform K [Drosophila melanogaster] gi|226372955|gb|ACO52089.1| MIP03096p [Drosophila melanogaster] gi|383292716|gb|AFH06430.1| myofilin, isoform K [Drosophila melanogaster]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 1   MRAPEVHHYHPPPRGFYRPFISEYPTYPSFKSIYDDPVNPHERINIPGYRYLPISRETYG 60
           ++  E    H  PR   RP+ S Y   PS++SIYD+P   +ER+   GYRYLP+SR+TYG
Sbjct: 29  LKGSEDIRAHEAPRAS-RPY-SSYLDSPSYRSIYDEPATANERVQSSGYRYLPVSRDTYG 86

Query: 61  ISPRNIQPHHYPHYDRPFP 79
            SPR I  HHY    +  P
Sbjct: 87  YSPRAIYDHHYSRTSKLVP 105

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|33329049|gb|AAQ09931.1| CG6803, partial [Drosophila yakuba]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 1   MRAPEVHHYHPPPRGFYRPFISEYPTYPSFKSIYDDPVNPHERINIPGYRYLPISRETYG 60
           ++  E    H  PR   RP+ S Y   PS++SIYD+P   +ER+   GYRYLP+SR+TYG
Sbjct: 36  LKGSEDIRAHEAPRAS-RPY-SSYLDSPSYRSIYDEPATANERVQSSGYRYLPVSRDTYG 93

Query: 61  ISPRNIQPHHY 71
            SPR I  HHY
Sbjct: 94  YSPRAIYDHHY 104

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
FB|FBgn0038294	365	Mf "Myofilin" [Drosophila mela	0.689	0.164	0.548	2.3e-13

FB|FBgn0038294 Mf "Myofilin" [Drosophila melanogaster (taxid:7227)]

 Score = 180 (68.4 bits), Expect = 2.3e-13, P = 2.3e-13
 Identities = 34/62 (54%), Positives = 42/62 (67%)

Query:    10 HPPPRGFYRPFISEYPTYPSFKSIYDDPVNPHERINIPGYRYLPISRETYGISPRNIQPH 69
             H  PR   RP+ S Y   PS++SIYD+P   +ER+   GYRYLP+SR+TYG SPR I  H
Sbjct:    38 HEAPRAS-RPY-SSYLDSPSYRSIYDEPATANERVQSSGYRYLPVSRDTYGYSPRAIYDH 95

Query:    70 HY 71
             HY
Sbjct:    96 HY 97


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.147   0.505    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       87        87   0.00091  102 3  12 22  0.49    29
                                                     29  0.48    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  394 (42 KB)
  Total size of DFA:  83 KB (2068 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.03u 0.09s 10.12t   Elapsed:  00:00:02
  Total cpu time:  10.03u 0.09s 10.12t   Elapsed:  00:00:03
  Start:  Thu Aug 15 11:51:24 2013   End:  Thu Aug 15 11:51:27 2013

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=NAS

GO:0031672 "A band" evidence=IDA

GO:0035220 "wing disc development" evidence=IGI

GO:0022416 "chaeta development" evidence=IGI

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00