Psyllid ID: psy7421

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-----
Protein Sequence
MSENVYFDNIIITESLDEAKQFAEATFKQKLSKRTNDKEMDGEWEAPQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMIPNPEYYHDAEPFKLFPIVSTLQEQVEKKNRIFSRYLSPKIQKYINYQNVYFDNIIITESLDEAKQFAEATFKQKLSKRTNDKSFVSMVMKYTQENPWLWAVYVIVTGVFVVLFYVLCCSGASKDWLGQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSAVKPADW
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccEEEEEEEEcccEEEEEEEcccHHHHHHHHHHHHHHcHHHHcccHHHHHHHHHHccccccHHHEEEEEEEcEEEEEEEEEEcccccccccEEEEcccccccccccccEEEccccccEEEEcccccccccccccEEEEEEEEEcccccccccEEEEEccccccccccccccccccEEEEccccccccccEEEEEEEccccccccccccccccccccccccccccEEEEEEEccccEEEEEEccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEccEEEEEcHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEEEEEEcccEEEEEEEEEccHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHccccHHEEEEEEEEccHHHHEEEEccccHHHccccEEEEEcccccccccccEEEEccHHHHHHHHcccccccccccccEEEEEEEEEccccccccEEEEEcccccccccHHHccccccEEEEEcccccccccEEEEEEEEccccccEEEEHcccccccccccccccccEEEEEEEccccEEEEEEccEEEEcccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
msenvyfdnIIITESLDEAKQFAEATFKQKLSkrtndkemdgeweapqienplcvdapgcgpwtvpliknpkfkgkwsppminnpnyngkwaprmipnpeyyhdaepfklfpIVSTLQEQVEKKNRIFSRYLSPKIQKYINYQNVYFDNIIITESLDEAKQFAEATFKQKLSKRTNDKSFVSMVMKYTQENPWLWAVYVIVTGVFVVLFYVLCCSgaskdwlgqwsieplklhplvgdsglvqkskAKHHAIsanldkpfifnkvpFVIQYEVMfqdkhdcgGAYLKLLtegpalqdltafndktpytimfgpdkcgtddkvHFIIRhrnplngsitekhhkaikpsvnlysnesphlytlvlypdnkyavyidnelnieghlldegtfnppinppkeivdvndkkpatwderekipdpevtkpedwdedepyeiedveahkpdgwlsdepklipdpsavkpadw
Flexible Loop (DISEMBL)
MSENVYFDNIIITESLDEAKQFAEATFKqklskrtndkemDGEWEAPQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMIPNPEYYHDAEPFKLFPIVSTLQEQVEKKNRifsrylspkiQKYINYQNVYFDNIIITESLDEAKQFAEATfkqklskrtndkSFVSMVMKYTQENPWLWAVYVIVTGVFVVLFYVLCCSGASKDWLGQWSIEPLKLHPLVGDSGLVQKSKAKHHAisanldkpfiFNKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRnplngsitekhHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTfnppinppkeivdvndkkpatwderekipdpevtkpedwdedEPYEIEDVeahkpdgwlsdepklipdpsavkpadw
Low Complexity Region (SEG)
MSENVYFDNIIITESLDEAKQFAEATFKQKLSKRTNDKEMDGEWEAPQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMIPNPEYYHDAEPFKLFPIVSTLQEQVEKKNRIFSRYLSPKIQKYINYQNVYFDNIIITESLDEAKQFAEATFKQKLSKRTNDKSFVSMVMKYTQENPWLWAVYVIVTGVFVVLFYVLCCSGASKDWLGQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSAVKPADW
Disordered region (IsUnstruct)
****VYFDNIIITESLD******************************QIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMIPNPEYYHDAEPFKLFPIVSTLQEQVEKKNRIFSRYLSPKIQKYINYQNVYFDNIIITESLDEAKQFAEATF**********KSFVSMVMKYTQENPWLWAVYVIVTGVFVVLFYVLCCSGASKDWLGQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTF****************************************************************************
Disordered Region (DISOPRED)
********NIIITESLDEAKQFAEATFKQKLSKRTNDKEMDGEWEAPQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMIPNPEYYHDAEPFKLFPIVSTLQEQVEKKNRIFSRYLSPKIQKYINYQNVYFDNIIITESLDEAKQFAEATFKQKL***********MVMKYTQENPWLWAVYVIVTGVFVVLFYVLCCSGASKDWLGQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPA********DKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINP*********K**ATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSAVK****
Disordered Region (DISEMBL)
MSENVYFDNIIITESLDEAKQFAEATFKQKLSKRTNDKEMDGEWEAPQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMIPNPEYYHDAEPFKLFPIVSTLQEQVEKKNRIFSRYLSPKIQKYINYQNVYFDNIIITESLDEAKQFAEATFKQKLSKRTNDKSFVSMVMKYTQENPWLWAVYVIVTGVFVVLFYVLCCSGASKDWLGQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSAVKPADW
Disordered Region (DISPRO)
*SENVYFDNIIITESLDEAKQFAEATFKQKLSKRTNDKEMDGEWEAPQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMIPNPEYYHDAEPFKLFPIVSTLQEQVEKKNRIFSRYLSPKIQKYINYQNVYFDNIIITESLDEAKQFAEATFKQKLSKRTNDKSFVSMVMKYTQENPWLWAVYVIVTGVFVVLFYVLCCSGASKDWLGQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSAV*****
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSENVYFDNIIITESLDEAKQFAEATFKQKLSKRTNDKEMDGEWEAPQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMIPNPEYYHDAEPFKLFPIVSTLQEQVEKKNRIFSRYLSPKIQKYINYQNVYFDNIIITESLDEAKQFAEATFKQKLSKRTNDKSFVSMVMKYTQENPWLWAVYVIVTGVFVVLFYVLCCSGASKDWLGQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSAVKPADW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	465	2.2.26 [Sep-21-2011]
P27824	592	Calnexin OS=Homo sapiens	yes	N/A	0.511	0.402	0.552	2e-72
Q5R440	592	Calnexin OS=Pongo abelii	yes	N/A	0.511	0.402	0.548	4e-72
P52194	611	Calmegin OS=Mus musculus	yes	N/A	0.511	0.389	0.577	4e-72
P24643	593	Calnexin OS=Canis familia	no	N/A	0.511	0.401	0.544	2e-71
O14967	610	Calmegin OS=Homo sapiens	no	N/A	0.511	0.390	0.577	1e-70
P35564	591	Calnexin OS=Mus musculus	no	N/A	0.511	0.402	0.540	3e-70
P35565	591	Calnexin OS=Rattus norveg	no	N/A	0.511	0.402	0.540	3e-70
Q3SYT6	606	Calmegin OS=Bos taurus GN	no	N/A	0.511	0.392	0.577	3e-70
A8XA40	623	Calnexin OS=Caenorhabditi	N/A	N/A	0.516	0.385	0.483	8e-62
P34652	619	Calnexin OS=Caenorhabditi	yes	N/A	0.511	0.384	0.475	1e-59

>sp|P27824|CALX_HUMAN Calnexin OS=Homo sapiens GN=CANX PE=1 SV=2

 Score =  273 bits (698), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 136/246 (55%), Positives = 176/246 (71%), Gaps = 8/246 (3%)

Query: 223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
           G+W +E +K   L GD GLV  S+AKHHAISA L+KPF+F+  P ++QYEV FQ+  +CG
Sbjct: 102 GKWEVEEMKESKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECG 161

Query: 283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
           GAY+KLL++ P L +L  F+DKTPYTIMFGPDKCG D K+HFI RH+NP  G   EKH K
Sbjct: 162 GAYVKLLSKTPEL-NLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGIYEEKHAK 220

Query: 343 AIKPSVNL---YSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
             +P  +L   ++++  HLYTL+L PDN + + +D  +   G+LL++ T  PP+NP +EI
Sbjct: 221 --RPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLLNDMT--PPVNPSREI 276

Query: 400 VDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSA 459
            D  D+KP  WDER KIPDPE  KP+DWDED P +I D EA KP+GWL DEP+ +PDP A
Sbjct: 277 EDPEDRKPEDWDERPKIPDPEAVKPDDWDEDAPAKIPDEEATKPEGWLDDEPEYVPDPDA 336

Query: 460 VKPADW 465
            KP DW
Sbjct: 337 EKPEDW 342

Calcium-binding protein that interacts with newly synthesized glycoproteins in the endoplasmic reticulum. It may act in assisting protein assembly and/or in the retention within the ER of unassembled protein subunits. It seems to play a major role in the quality control apparatus of the ER by the retention of incorrectly folded proteins.
Homo sapiens (taxid: 9606)

>sp|Q5R440|CALX_PONAB Calnexin OS=Pongo abelii GN=CANX PE=2 SV=2

 Score =  272 bits (695), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 135/246 (54%), Positives = 176/246 (71%), Gaps = 8/246 (3%)

Query: 223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
           G+W ++ +K   L GD GLV  S+AKHHAISA L+KPF+F+  P ++QYEV FQ+  +CG
Sbjct: 102 GKWEVDEMKESKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECG 161

Query: 283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
           GAY+KLL++ P L +L  F+DKTPYTIMFGPDKCG D K+HFI RH+NP  G   EKH K
Sbjct: 162 GAYVKLLSKTPEL-NLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGIYEEKHAK 220

Query: 343 AIKPSVNL---YSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
             +P  +L   ++++  HLYTL+L PDN + + +D  +   G+LL++ T  PP+NP +EI
Sbjct: 221 --RPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLLNDMT--PPVNPSREI 276

Query: 400 VDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSA 459
            D  D+KP  WDER KIPDPE  KP+DWDED P +I D EA KP+GWL DEP+ +PDP A
Sbjct: 277 EDPEDRKPEDWDERPKIPDPEAVKPDDWDEDAPAKIPDEEATKPEGWLDDEPEYVPDPDA 336

Query: 460 VKPADW 465
            KP DW
Sbjct: 337 EKPEDW 342

Calcium-binding protein that interacts with newly synthesized glycoproteins in the endoplasmic reticulum. It may act in assisting protein assembly and/or in the retention within the ER of unassembled protein subunits. It seems to play a major role in the quality control apparatus of the ER by the retention of incorrectly folded proteins.

Pongo abelii (taxid: 9601)

>sp|P52194|CLGN_MOUSE Calmegin OS=Mus musculus GN=Clgn PE=2 SV=2

 Score =  272 bits (695), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 142/246 (57%), Positives = 172/246 (69%), Gaps = 8/246 (3%)

Query: 223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
           G+W IE LK + + GD GLV KSKAKHHAI+A L+KPFIF   P ++QYEV FQD  DCG
Sbjct: 93  GRWEIEELKENQVPGDRGLVLKSKAKHHAIAAVLEKPFIFADKPLIVQYEVNFQDGIDCG 152

Query: 283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
           GAY+KLL +   L  L  F DKT YTIMFGPDKCG D K+H I RH++P  G   EKH K
Sbjct: 153 GAYIKLLADTGDLI-LENFYDKTSYTIMFGPDKCGEDYKLHLIFRHKHPKTGVFEEKHAK 211

Query: 343 AIKPSVNL---YSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
              P V+L   +++   HLYTLV+ PD+ + V ID ++  +G LLD+    PPINPP+EI
Sbjct: 212 P--PDVDLKEFFTDRKTHLYTLVMNPDDTFEVLIDQKVVNQGTLLDDVV--PPINPPREI 267

Query: 400 VDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSA 459
            D +DKKP  WD+R KIPDP   +PEDWDE+EP +IED  A KPDGWL DEPK IP+P A
Sbjct: 268 DDPSDKKPEEWDDRAKIPDPTAVRPEDWDENEPAQIEDSSAVKPDGWLDDEPKFIPNPKA 327

Query: 460 VKPADW 465
            KP DW
Sbjct: 328 EKPEDW 333

Probably plays an important role in spermatogenesis. Binds calcium ions.

Mus musculus (taxid: 10090)

>sp|P24643|CALX_CANFA Calnexin OS=Canis familiaris GN=CANX PE=1 SV=3

 Score =  270 bits (690), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 134/246 (54%), Positives = 176/246 (71%), Gaps = 8/246 (3%)

Query: 223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
           G+W ++ +K   L GD GLV  S+AKHHAISA L+KPF+F+  P ++QYEV FQ+  +CG
Sbjct: 103 GKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECG 162

Query: 283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
           GAY+KLL++ P L +L  F+DKTPYTIMFGPDKCG D K+HFI RH+NP  G   EKH K
Sbjct: 163 GAYVKLLSKTPEL-NLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAK 221

Query: 343 AIKPSVNL---YSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
             +P  +L   ++++  HLYTL+L PDN + + +D  +   G+LL++ T  PP+NP +EI
Sbjct: 222 --RPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLLNDMT--PPVNPSREI 277

Query: 400 VDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSA 459
            D  D+KP  WDER KIPDP+  KP+DW+ED P +I D EA KPDGWL DEP+ +PDP A
Sbjct: 278 EDPEDQKPEDWDERPKIPDPDAVKPDDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPDA 337

Query: 460 VKPADW 465
            KP DW
Sbjct: 338 EKPEDW 343

Calcium-binding protein that interacts with newly synthesized glycoproteins in the endoplasmic reticulum. It may act in assisting protein assembly and/or in the retention within the ER of unassembled protein subunits. It seems to play a major role in the quality control apparatus of the ER by the retention of incorrectly folded proteins.

Canis familiaris (taxid: 9615)

>sp|O14967|CLGN_HUMAN Calmegin OS=Homo sapiens GN=CLGN PE=1 SV=1

 Score =  267 bits (683), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 142/246 (57%), Positives = 167/246 (67%), Gaps = 8/246 (3%)

Query: 223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
           G+W IE LK + + GD GLV KS+AKHHAISA L KPFIF   P ++QYEV FQD  DCG
Sbjct: 93  GRWEIEELKENQVPGDRGLVLKSRAKHHAISAVLAKPFIFADKPLIVQYEVNFQDGIDCG 152

Query: 283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
           GAY+KLL +   L  L  F DKT Y IMFGPDKCG D K+HFI RH++P  G   EKH K
Sbjct: 153 GAYIKLLADTDDLI-LENFYDKTSYIIMFGPDKCGEDYKLHFIFRHKHPKTGVFEEKHAK 211

Query: 343 AIKPSVNL---YSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
              P V+L   +++   HLYTLV+ PD+ + V +D  +  +G LL++    PPI PPKEI
Sbjct: 212 P--PDVDLKKFFTDRKTHLYTLVMNPDDTFEVLVDQTVVNKGSLLEDVV--PPIKPPKEI 267

Query: 400 VDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSA 459
            D NDKKP  WDER KIPDP   KPEDWDE EP +IED    KP GWL DEPK IPDP+A
Sbjct: 268 EDPNDKKPEEWDERAKIPDPSAVKPEDWDESEPAQIEDSSVVKPAGWLDDEPKFIPDPNA 327

Query: 460 VKPADW 465
            KP DW
Sbjct: 328 EKPDDW 333

Probably plays an important role in spermatogenesis. Binds calcium ions.

Homo sapiens (taxid: 9606)

>sp|P35564|CALX_MOUSE Calnexin OS=Mus musculus GN=Canx PE=1 SV=1

 Score =  266 bits (680), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 133/246 (54%), Positives = 173/246 (70%), Gaps = 8/246 (3%)

Query: 223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
           G+W ++ +K   L GD GLV  S+AKHHAISA L+KPF+F+  P ++QYEV FQ+  +CG
Sbjct: 103 GKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECG 162

Query: 283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
           GAY+KLL++   L  L  F+DKTPYTIMFGPDKCG D K+HFI RH+NP  G   EKH K
Sbjct: 163 GAYVKLLSKTAELS-LDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAK 221

Query: 343 AIKPSVNL---YSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
             +P  +L   ++++  HLYTL+L PDN + + +D  +   G+LL++ T  PP+NP +EI
Sbjct: 222 --RPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLLNDMT--PPVNPSREI 277

Query: 400 VDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSA 459
            D  D+KP  WDER KI DP+  KP+DWDED P +I D EA KP+GWL DEP+ IPDP A
Sbjct: 278 EDPEDRKPEDWDERPKIADPDAVKPDDWDEDAPSKIPDEEATKPEGWLDDEPEYIPDPDA 337

Query: 460 VKPADW 465
            KP DW
Sbjct: 338 EKPEDW 343

Calcium-binding protein that interacts with newly synthesized glycoproteins in the endoplasmic reticulum. It may act in assisting protein assembly and/or in the retention within the ER of unassembled protein subunits. It seems to play a major role in the quality control apparatus of the ER by the retention of incorrectly folded proteins. Partial T-cell antigen receptor complexes can escape the ER of immature thymocytes in association with their molecular chaperone to be expressed at low levels on the cell surface where they may function as a signaling complex to regulate thymocyte maturation.

Mus musculus (taxid: 10090)

>sp|P35565|CALX_RAT Calnexin OS=Rattus norvegicus GN=Canx PE=1 SV=1

 Score =  266 bits (680), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 133/246 (54%), Positives = 174/246 (70%), Gaps = 8/246 (3%)

Query: 223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
           G+W ++ +K   L GD GLV  S+AKHHAISA L+KPF+F+  P ++QYEV FQ+  +CG
Sbjct: 103 GKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECG 162

Query: 283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
           GAY+KLL++   L +L  F+DKTPYTIMFGPDKCG D K+HFI RH+NP  G   EKH K
Sbjct: 163 GAYVKLLSKTSEL-NLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAK 221

Query: 343 AIKPSVNL---YSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
             +P  +L   ++++  HLYTL+L PDN + + +D  +   G+LL++ T  PP+NP +EI
Sbjct: 222 --RPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLLNDMT--PPVNPSREI 277

Query: 400 VDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSA 459
            D  D+KP  WDER KI DP+  KP+DWDED P +I D EA KP+GWL DEP+ IPDP A
Sbjct: 278 EDPEDRKPEDWDERPKIADPDAVKPDDWDEDAPSKIPDEEATKPEGWLDDEPEYIPDPDA 337

Query: 460 VKPADW 465
            KP DW
Sbjct: 338 EKPEDW 343

Calcium-binding protein that interacts with newly synthesized glycoproteins in the endoplasmic reticulum. It may act in assisting protein assembly and/or in the retention within the ER of unassembled protein subunits. It seems to play a major role in the quality control apparatus of the ER by the retention of incorrectly folded proteins.

Rattus norvegicus (taxid: 10116)

>sp|Q3SYT6|CLGN_BOVIN Calmegin OS=Bos taurus GN=CLGN PE=2 SV=1

 Score =  266 bits (679), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 142/246 (57%), Positives = 169/246 (68%), Gaps = 8/246 (3%)

Query: 223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
           G+W IE LK + + GD GLV KS+AKHHAISA L KPFIF   P V+QYEV FQD  DCG
Sbjct: 89  GRWEIEELKENRIPGDRGLVLKSRAKHHAISAVLAKPFIFADKPLVVQYEVNFQDGIDCG 148

Query: 283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
           GAY+KLL +   L +L  F DKT YTIMFGPDKCG D K+HFI RH++P  G   EKH K
Sbjct: 149 GAYIKLLADTDGL-NLENFYDKTSYTIMFGPDKCGEDYKLHFIFRHKHPKTGVFEEKHAK 207

Query: 343 AIKPSVNL---YSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
              P V+L   +++   HLYTLV+ PD+ + V ID  +  +G LL++    PPINPPKEI
Sbjct: 208 P--PDVDLKRFFTDRKTHLYTLVMNPDDTFEVLIDQIVVNKGSLLEDVV--PPINPPKEI 263

Query: 400 VDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSA 459
            D  D+KP  WDER KIPD    KPEDWDE EP +I D  A KPDGWL +EP+ IPDP+A
Sbjct: 264 EDPTDEKPDDWDERAKIPDASAVKPEDWDESEPPQIVDSSAVKPDGWLDNEPEFIPDPNA 323

Query: 460 VKPADW 465
            KP DW
Sbjct: 324 EKPFDW 329

Probably plays an important role in spermatogenesis. Binds calcium ions.

Bos taurus (taxid: 9913)

>sp|A8XA40|CALX_CAEBR Calnexin OS=Caenorhabditis briggsae GN=cnx-1 PE=3 SV=3

 Score =  238 bits (607), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 118/244 (48%), Positives = 161/244 (65%), Gaps = 4/244 (1%)

Query: 223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
           G+WSI       + GD GL+ K+KA+HHAI+A L+ PF+F    F+ QY+V F++  +CG
Sbjct: 93  GEWSIGAPTKVSIEGDYGLIVKTKARHHAIAAKLETPFVFGSNKFIAQYDVKFEEGQECG 152

Query: 283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
           G YLKLL+EG A +DL +F DKTPYTIMFGPDKCG   +VH I R++NP+NG+++E H K
Sbjct: 153 GGYLKLLSEG-AEKDLASFQDKTPYTIMFGPDKCGASGQVHLIFRYKNPVNGTVSEYHAK 211

Query: 343 AIKPSVNLY-SNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEIVD 401
                   Y  + + HL+TLV+ P  +Y+V +D +    G++L +   +P + PPKEI D
Sbjct: 212 QPASIGTAYWDDHNTHLFTLVVKPTGEYSVSVDGKSLYYGNMLSD--ISPSLTPPKEIFD 269

Query: 402 VNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSAVK 461
             D KP  WDERE+I D   +KP+DWDE+EP  + D  A KP  W  +E +LIPDP A K
Sbjct: 270 ETDLKPEDWDEREQIEDETASKPDDWDENEPQNVVDESATKPYDWNEEENELIPDPEAQK 329

Query: 462 PADW 465
           P DW
Sbjct: 330 PQDW 333

Calcium-binding protein that interacts with newly synthesized glycoproteins in the endoplasmic reticulum. It may act in assisting protein assembly and/or in the retention within the ER of unassembled protein subunits. It seems to play a major role in the quality control apparatus of the ER by the retention of incorrectly folded proteins. Required for embryogenesis and larval development under heat and ER stress conditions. May be important for germ cell development. Involved in neuronal necrotic cell death.

Caenorhabditis briggsae (taxid: 6238)

>sp|P34652|CALX_CAEEL Calnexin OS=Caenorhabditis elegans GN=cnx-1 PE=1 SV=1

 Score =  231 bits (588), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 117/246 (47%), Positives = 160/246 (65%), Gaps = 8/246 (3%)

Query: 223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
           G+WSI       + GD GL+ K+KA+HHAI+A L+ PF F+   FV+QY++ F++  +CG
Sbjct: 94  GEWSIGAPTKVSIEGDLGLIVKTKARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECG 153

Query: 283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
           G YLKLL+EG A +DL  F DKT YTIMFGPDKCG   KVH I R++NP+NG+I+E H  
Sbjct: 154 GGYLKLLSEG-AEKDLANFQDKTAYTIMFGPDKCGATGKVHLIFRYKNPINGTISEYH-- 210

Query: 343 AIKPSV---NLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
           A +P+      + + + HL+TLV+ P  +Y+V +D +    G+++ + T  P + PPK+I
Sbjct: 211 ANQPTTIGSTYWDDHNTHLFTLVVKPTGEYSVSVDGKSLYYGNMMSDVT--PALTPPKQI 268

Query: 400 VDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSA 459
            D  D KP  WDERE I D    KP+DWDE+EP  + D  A KP  W  +E +LI DP A
Sbjct: 269 FDETDLKPVDWDERENIEDESAVKPDDWDENEPQSVVDEAATKPYDWNEEENELIADPEA 328

Query: 460 VKPADW 465
            KP DW
Sbjct: 329 KKPQDW 334

Calcium-binding protein that interacts with newly synthesized glycoproteins in the endoplasmic reticulum. It may act in assisting protein assembly and/or in the retention within the ER of unassembled protein subunits. It seems to play a major role in the quality control apparatus of the ER by the retention of incorrectly folded proteins (By similarity). Required for embryogenesis and larval development under heat and ER stress conditions. May be important for germ cell development. Involved in neuronal necrotic cell death.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	465
193704516	561	PREDICTED: calnexin [Acyrthosiphon pisum	0.522	0.433	0.606	4e-80
91080995	585	PREDICTED: similar to calnexin [Triboliu	0.518	0.411	0.590	2e-77
345482689	614	PREDICTED: calnexin [Nasonia vitripennis	0.518	0.392	0.581	2e-75
348521106	743	PREDICTED: calnexin-like [Oreochromis ni	0.516	0.323	0.586	3e-75
321468272	579	hypothetical protein DAPPUDRAFT_304937 [	0.511	0.411	0.565	1e-74
332020353	562	Calnexin [Acromyrmex echinatior]	0.518	0.428	0.586	7e-74
322790259	607	hypothetical protein SINV_10264 [Solenop	0.518	0.397	0.586	8e-74
346468565	581	hypothetical protein [Amblyomma maculatu	0.511	0.409	0.563	8e-74
148717305	588	calnexin [Crassostrea gigas]	0.511	0.404	0.581	1e-73
443725025	614	hypothetical protein CAPTEDRAFT_170444 [	0.511	0.387	0.581	1e-73

>gi|193704516|ref|XP_001945805.1| PREDICTED: calnexin [Acyrthosiphon pisum]

 Score =  305 bits (780), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 148/244 (60%), Positives = 177/244 (72%), Gaps = 1/244 (0%)

Query: 223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNK-VPFVIQYEVMFQDKHDC 281
           G+W+IE L+  PL GD GLV  S+++H AIS+ LDKPF F+     VIQYEV FQ  H C
Sbjct: 80  GKWNIEELERFPLKGDRGLVLASESRHAAISSKLDKPFKFDGGKTLVIQYEVAFQKPHTC 139

Query: 282 GGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHH 341
           GGAYLKLLT+GP ++DLT FNDKTPY+IMFGPDKCG   KVHFIIRH+NP N +ITEKH 
Sbjct: 140 GGAYLKLLTDGPHIKDLTQFNDKTPYSIMFGPDKCGPTSKVHFIIRHKNPRNNTITEKHC 199

Query: 342 KAIKPSVNLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEIVD 401
             +K   +++++  PHL+TLV+ PDN Y+ ++D EL  EG LL E  FNPPINPPKEIVD
Sbjct: 200 LKLKTEESVFTDHQPHLFTLVVKPDNSYSFFLDQELQYEGDLLSEDDFNPPINPPKEIVD 259

Query: 402 VNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSAVK 461
            ND KP  WDER KIPD    KP+DWDE EP  I D  +  PD WL +EP  IPD +AVK
Sbjct: 260 KNDVKPEDWDERSKIPDESAVKPDDWDESEPESIPDESSSMPDDWLEEEPTHIPDTAAVK 319

Query: 462 PADW 465
           P DW
Sbjct: 320 PTDW 323

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080995|ref|XP_975051.1| PREDICTED: similar to calnexin [Tribolium castaneum] gi|270005348|gb|EFA01796.1| hypothetical protein TcasGA2_TC007397 [Tribolium castaneum]

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 144/244 (59%), Positives = 183/244 (75%), Gaps = 3/244 (1%)

Query: 223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
           G+W +EP +   LVGD GLV KSKAKH AI+++L KPFIF+  P ++QYEV+FQD  +CG
Sbjct: 91  GEWQLEPTQKDSLVGDKGLVLKSKAKHAAIASSLLKPFIFDTKPLIVQYEVIFQDGQECG 150

Query: 283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
           GAYLKLLT+  A ++L  F+DKTPY+IMFGPDKCG D K+HFI +HRNPLNGS+ EKH K
Sbjct: 151 GAYLKLLTQDSASKNLNNFHDKTPYSIMFGPDKCGNDHKLHFIFKHRNPLNGSVEEKHCK 210

Query: 343 AIKPSV-NLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEIVD 401
             K  +  ++S++ PHL+TLVL+PDN + + IDN++   G LL++  F P +NPPKEI D
Sbjct: 211 KPKDRIEEVFSDKLPHLFTLVLHPDNTFEILIDNKVVNSGSLLED--FTPAVNPPKEIDD 268

Query: 402 VNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSAVK 461
            NDKKP  WDEREKIPDP+  KP+DWDED P +I D  A KP+GWL +EP  + DP A K
Sbjct: 269 PNDKKPEDWDEREKIPDPDAVKPDDWDEDAPAQIVDESAVKPEGWLDNEPSHVFDPDAKK 328

Query: 462 PADW 465
           P DW
Sbjct: 329 PEDW 332

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345482689|ref|XP_001608138.2| PREDICTED: calnexin [Nasonia vitripennis]

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 142/244 (58%), Positives = 176/244 (72%), Gaps = 3/244 (1%)

Query: 223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
           G W++E  K     G+ GLV KSKA+H A+SA L+KPFIF+  P ++QYEV+FQ+  +CG
Sbjct: 93  GIWAVEEPKRSVENGNLGLVLKSKARHAALSALLNKPFIFDDKPLIVQYEVIFQEGQECG 152

Query: 283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
           GAYLKL++  P  +DL  F+DKTPY+IMFGPDKCG D  +HFI RHRNPLNGSI EKH K
Sbjct: 153 GAYLKLISVDPQHKDLRNFHDKTPYSIMFGPDKCGNDHMLHFIFRHRNPLNGSIEEKHAK 212

Query: 343 AIKPSV-NLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEIVD 401
             K  + + + ++ PHLYTLV+ PDN + V +D  +  EG LLD+  FNPP+NPP EI D
Sbjct: 213 KPKERLEDFFKDKQPHLYTLVVRPDNTFEVKVDGNVVNEGSLLDD--FNPPVNPPLEIED 270

Query: 402 VNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSAVK 461
            NDK+P  WDEREKIPDP   KPEDWDED P +I D     P+GWL DEP  IP+P +VK
Sbjct: 271 PNDKRPEDWDEREKIPDPTAVKPEDWDEDAPAQIVDENDQVPEGWLEDEPSTIPNPDSVK 330

Query: 462 PADW 465
           PADW
Sbjct: 331 PADW 334

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348521106|ref|XP_003448067.1| PREDICTED: calnexin-like [Oreochromis niloticus]

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 143/244 (58%), Positives = 178/244 (72%), Gaps = 4/244 (1%)

Query: 223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
           G+W++E LK + + GD GLV KS+AKHHAISA LDKPF+F   P VIQYEV FQD  DCG
Sbjct: 178 GKWAVEQLKENKVPGDQGLVLKSRAKHHAISAMLDKPFVFKDEPLVIQYEVNFQDGIDCG 237

Query: 283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
           GAY+KLL++  +L +L  F+D+TPYTIMFGPDKCG D K+HFI RH+NPLN  + EKH K
Sbjct: 238 GAYIKLLSDTGSL-NLEQFHDRTPYTIMFGPDKCGEDYKLHFIFRHKNPLNRDMEEKHAK 296

Query: 343 AIKPSVN-LYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEIVD 401
                +   Y+++  HLYTL+L PDN Y ++ID      G+LL++    PP+NPPKEI D
Sbjct: 297 RADVDLKKFYTDKKTHLYTLLLNPDNSYELFIDQSSVSRGNLLED--MVPPVNPPKEIDD 354

Query: 402 VNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSAVK 461
            ND KP  WDER KIPDPE  KP+DWDED P +IED +A KP+GWL DE + +PDP+A K
Sbjct: 355 PNDSKPDDWDERAKIPDPEAVKPDDWDEDAPAKIEDPDALKPEGWLDDESEFVPDPNAEK 414

Query: 462 PADW 465
           P DW
Sbjct: 415 PEDW 418

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|321468272|gb|EFX79258.1| hypothetical protein DAPPUDRAFT_304937 [Daphnia pulex]

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 139/246 (56%), Positives = 182/246 (73%), Gaps = 8/246 (3%)

Query: 223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
           G+W++E L    L GD GLV KSKAKH AISA LD+PF+F   P ++QY+V FQ+  +CG
Sbjct: 90  GKWAVESLMKDGLKGDLGLVLKSKAKHAAISAPLDRPFVFTNKPLIVQYDVTFQNGQECG 149

Query: 283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
           GAY+KLLT+   ++ L+ F DKTPYTIMFGPDKCG D K+HFI +H+NP +GS +EKH K
Sbjct: 150 GAYIKLLTQETGMR-LSQFTDKTPYTIMFGPDKCGNDHKLHFIFQHKNPKDGSFSEKHAK 208

Query: 343 AIKPSVNL---YSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
             KP+  L   + +  PHLYTL+++PDN + V +D ++  +G LL++  F+PP+NPP EI
Sbjct: 209 --KPNTRLDEYFKDGKPHLYTLMIHPDNTFDVSVDYKIVNKGTLLED--FSPPVNPPSEI 264

Query: 400 VDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSA 459
            D  D+KP  WDEREKI DP+  KP+DWDEDEP ++ D +A KPDGWL DEP++IPDPSA
Sbjct: 265 DDPEDRKPDDWDEREKIADPDAKKPDDWDEDEPEQVADTDAVKPDGWLDDEPEMIPDPSA 324

Query: 460 VKPADW 465
            KP DW
Sbjct: 325 EKPEDW 330

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020353|gb|EGI60775.1| Calnexin [Acromyrmex echinatior]

 Score =  284 bits (726), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 143/244 (58%), Positives = 174/244 (71%), Gaps = 3/244 (1%)

Query: 223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
           G WSIE  K H   GD GLV KSKA+H A+S  L KPF F   P V+QYEV FQ+  +CG
Sbjct: 87  GIWSIEEPKKHGEDGDLGLVLKSKARHAAVSTALTKPFYFEDKPLVVQYEVNFQEGQECG 146

Query: 283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
           GAYLKLLT      DL  F DKTPYTIMFGPDKCG D K+HFI RH+NPLNG+ITEKH K
Sbjct: 147 GAYLKLLTLDDKYGDLKQFQDKTPYTIMFGPDKCGNDHKLHFIFRHKNPLNGTITEKHCK 206

Query: 343 AIKPSV-NLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEIVD 401
             K  + + + +++PHLYTL++ PDN Y + +DN+L   G LLD+  F PP+NPP EI D
Sbjct: 207 KSKDKMEDYFKDKNPHLYTLIVRPDNMYEIKVDNKLLNSGSLLDD--FTPPVNPPLEIED 264

Query: 402 VNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSAVK 461
            +DK+P  WD+REKIPDP   KP+DWDED P +I D E   P+GWL DEP +IP+P++VK
Sbjct: 265 PDDKQPEDWDDREKIPDPLAEKPDDWDEDAPAQIVDEEDIMPEGWLEDEPPMIPNPNSVK 324

Query: 462 PADW 465
           P DW
Sbjct: 325 PDDW 328

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322790259|gb|EFZ15258.1| hypothetical protein SINV_10264 [Solenopsis invicta]

 Score =  284 bits (726), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 143/244 (58%), Positives = 174/244 (71%), Gaps = 3/244 (1%)

Query: 223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
           G WSIE  K H   GD GLV KSKA+H A+S  L KPF F   P V+QYEV FQ+  +CG
Sbjct: 81  GIWSIEEPKKHGEDGDLGLVLKSKARHAAVSTLLTKPFYFEDKPLVVQYEVNFQEGQECG 140

Query: 283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
           GAYLKLLT      DL  F DKTPYTIMFGPDKCG D K+HFI RH+NPLNG+ITEKH K
Sbjct: 141 GAYLKLLTLDDKYGDLKQFQDKTPYTIMFGPDKCGQDHKLHFIFRHKNPLNGTITEKHCK 200

Query: 343 AIKPSV-NLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEIVD 401
             K  + + + +++PHLYTL++ PDN Y + +DN+L+  G LLD+  F PP+NPP EI D
Sbjct: 201 KSKDRLEDYFKDKNPHLYTLIVRPDNTYVIKVDNKLHNTGSLLDD--FAPPVNPPLEIED 258

Query: 402 VNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSAVK 461
            +DK+P  WD+REKIPDP   KP+DWDED P +I D E   P+GWL DEP +IP+P +VK
Sbjct: 259 PDDKQPEDWDDREKIPDPLAEKPDDWDEDAPAQIVDEEDVMPEGWLEDEPPMIPNPDSVK 318

Query: 462 PADW 465
           P DW
Sbjct: 319 PDDW 322

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346468565|gb|AEO34127.1| hypothetical protein [Amblyomma maculatum]

 Score =  284 bits (726), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 137/243 (56%), Positives = 175/243 (72%), Gaps = 5/243 (2%)

Query: 223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
           G+W +E    + L GD GLV KSKA HHAI+A L KPF F+  PFV+QYEV FQ+  DCG
Sbjct: 80  GKWEVEAASKNHLRGDLGLVLKSKAHHHAIAAKLAKPFTFDHKPFVLQYEVQFQEGQDCG 139

Query: 283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
           GAYLKLL++    +DL  F+DK+PYTIMFGPDKCG+D K+HFI RHRNP NGS  EKH K
Sbjct: 140 GAYLKLLSDLEENKDLKQFHDKSPYTIMFGPDKCGSDHKLHFIFRHRNPRNGSYEEKHWK 199

Query: 343 ---AIKPSVNLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
              +I     ++ ++ PHL+TLVL PDN++ + +D     +G LL++  F PP+NPPKE+
Sbjct: 200 KSTSISKFDEVFKDKKPHLFTLVLTPDNRFEILVDQRSEAKGSLLED--FEPPVNPPKEV 257

Query: 400 VDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSA 459
            D +DK+P  WDEREK+PDP   KP+DWDED P +I D +A KP GWL DEPKL+PD +A
Sbjct: 258 EDPDDKRPEDWDEREKVPDPNAVKPDDWDEDAPRQIPDPDAKKPVGWLDDEPKLVPDATA 317

Query: 460 VKP 462
            +P
Sbjct: 318 ERP 320

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|148717305|dbj|BAF63638.1| calnexin [Crassostrea gigas]

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 143/246 (58%), Positives = 178/246 (72%), Gaps = 8/246 (3%)

Query: 223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
           G+W +E  K   + GD GLV KSKAKHHA+++ L+KPF F+  P  +QYEV +QD  DCG
Sbjct: 91  GKWKVEVPKSSAVEGDLGLVLKSKAKHHAVASKLNKPFKFDGKPLFVQYEVKYQDGIDCG 150

Query: 283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
           GAY+KLL+  PAL DL  F+DKTPYTIMFGPDKCG D+K+HFI RH+NP  G I EKH K
Sbjct: 151 GAYVKLLSADPAL-DLKQFHDKTPYTIMFGPDKCGLDNKLHFIFRHKNPKTGEIEEKHAK 209

Query: 343 AIKPSVNL---YSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
             KPS  L   ++++  H Y+LV+ PDN + V +D  +   G LL++   +PP+NPPKEI
Sbjct: 210 --KPSAALDSYFTDKKTHQYSLVINPDNSFEVSVDGSVVNSGSLLED--VSPPVNPPKEI 265

Query: 400 VDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSA 459
            D NDKKP  WDE+EKIPDP+  KPEDWDE+EP +I + EA KPDGWL DE KL+PDP A
Sbjct: 266 EDPNDKKPEDWDEKEKIPDPDAEKPEDWDENEPEKIVNSEATKPDGWLEDENKLVPDPDA 325

Query: 460 VKPADW 465
            KP DW
Sbjct: 326 EKPKDW 331

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|443725025|gb|ELU12767.1| hypothetical protein CAPTEDRAFT_170444 [Capitella teleta]

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 143/246 (58%), Positives = 176/246 (71%), Gaps = 8/246 (3%)

Query: 223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
           G WSIE    +PLVGD  LV KSKAKHHA +A L KPF+F+  PFV+Q+EV FQ+  DCG
Sbjct: 114 GVWSIEEPADNPLVGDLSLVLKSKAKHHATAAKLKKPFVFDNKPFVVQFEVKFQNGQDCG 173

Query: 283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
           GAY+KLL+E     DL  F DK+PYTIMFGPDKCG D+K+HFI RH+NP+ G   EKH K
Sbjct: 174 GAYVKLLSE-EGNSDLKKFYDKSPYTIMFGPDKCGNDNKLHFIFRHQNPITGEFEEKHAK 232

Query: 343 AIKPSVNL---YSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
             KPS  L   ++++  HLYTLV+ PDN + V +D  +   G LL++   +P +NPPKEI
Sbjct: 233 --KPSGALDKFFTDKKTHLYTLVVKPDNSFEVLVDQAIVNSGTLLND--VSPAVNPPKEI 288

Query: 400 VDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSA 459
            D  DKKPA WDEREKIPDP+ +KP+DWDED P +I D +A KP+GWL DEP LIPD  +
Sbjct: 289 TDPEDKKPADWDEREKIPDPDASKPDDWDEDAPEKIADADAVKPEGWLDDEPDLIPDEDS 348

Query: 460 VKPADW 465
            KP DW
Sbjct: 349 EKPEDW 354

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	465
ZFIN|ZDB-GENE-060929-708	630	clgn "calmegin" [Danio rerio (	0.511	0.377	0.569	3.5e-75
UNIPROTKB|F1NPD5	509	CLGN "Uncharacterized protein"	0.511	0.467	0.593	4.5e-75
UNIPROTKB|B4DGP8	627	CANX "cDNA FLJ55574, highly si	0.511	0.379	0.552	5.1e-74
UNIPROTKB|P27824	592	CANX "Calnexin" [Homo sapiens	0.511	0.402	0.552	5.1e-74
UNIPROTKB|Q5R440	592	CANX "Calnexin" [Pongo abelii	0.511	0.402	0.548	1.1e-73
UNIPROTKB|F1P8B4	591	CANX "Calnexin" [Canis lupus f	0.511	0.402	0.548	1.1e-73
UNIPROTKB|J9PAB2	595	CANX "Calnexin" [Canis lupus f	0.511	0.4	0.548	1.1e-73
UNIPROTKB|J9NUT1	399	CANX "Calnexin" [Canis lupus f	0.511	0.596	0.548	1.1e-73
UNIPROTKB|E2RA18	620	CLGN "Uncharacterized protein"	0.511	0.383	0.585	1.7e-73
ZFIN|ZDB-GENE-040426-2797	600	canx "calnexin" [Danio rerio (	0.511	0.396	0.581	2.8e-73

ZFIN|ZDB-GENE-060929-708 clgn "calmegin" [Danio rerio (taxid:7955)]

 Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
 Identities = 140/246 (56%), Positives = 176/246 (71%)

Query:   223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
             G+W +EPLK + + GD GLV KS+AKHHAISA L+KPF+F   P ++QYEV FQD  DCG
Sbjct:   103 GKWEVEPLKENTVPGDLGLVLKSRAKHHAISALLNKPFVFKDKPLIVQYEVNFQDGIDCG 162

Query:   283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
             GAY+KLL++   L+ L  F+D+TPY+IMFGPDKCG D K+HFI RH+NPLNG + EKH K
Sbjct:   163 GAYIKLLSDSKDLE-LEQFHDRTPYSIMFGPDKCGEDYKLHFIFRHKNPLNGDVEEKHAK 221

Query:   343 AIKPSVNL---YSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
               +P V+L   Y+++  HL+TLVL PDN Y  +ID      G LL +    PP+NPPKEI
Sbjct:   222 --RPDVDLKKIYTDKKTHLFTLVLNPDNSYETFIDQSSVSRGSLLTDVV--PPVNPPKEI 277

Query:   400 VDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSA 459
              D  D KP  WDER KIPDPE  KPE+WDE+   ++ D +A KPDGWL DEP+ + DP+A
Sbjct:   278 DDPKDSKPEDWDERAKIPDPEAVKPEEWDEEALAKVPDPDAVKPDGWLDDEPEFVSDPTA 337

Query:   460 VKPADW 465
              KP DW
Sbjct:   338 EKPDDW 343

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|F1NPD5 CLGN "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
 Identities = 146/246 (59%), Positives = 175/246 (71%)

Query:   223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
             G+W +E LK + + GD GLV KS AKHHAISA L K FIF+K P ++QYEV FQ   DCG
Sbjct:    96 GRWEVEELKENTVPGDKGLVLKSAAKHHAISAMLTKAFIFDKKPLIVQYEVNFQGGIDCG 155

Query:   283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
             GAY+KLL+    L DL  F DKTPYTIMFGPDKCG D K+HFIIRHRNP  G   EKH K
Sbjct:   156 GAYIKLLSSTDDL-DLEFFFDKTPYTIMFGPDKCGEDYKLHFIIRHRNPKTGEYDEKHAK 214

Query:   343 AIKPSVNL---YSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
               +P V+L   Y ++  HLYTLVL PD+ + + ID  +  +G LL++    PP+NPPKEI
Sbjct:   215 --RPDVDLKKFYLDKKTHLYTLVLKPDDTFEMLIDQSVISKGSLLEDMV--PPVNPPKEI 270

Query:   400 VDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSA 459
              D  DKKP  WDER KIPDP   KP+DWDEDEP +IED++A KP+GWL  EP+ +PDPSA
Sbjct:   271 DDPTDKKPDDWDERPKIPDPNAVKPDDWDEDEPSKIEDLDAVKPEGWLDYEPQYVPDPSA 330

Query:   460 VKPADW 465
              KP DW
Sbjct:   331 KKPKDW 336

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

GO:0007339 "binding of sperm to zona pellucida" evidence=IEA

UNIPROTKB|B4DGP8 CANX "cDNA FLJ55574, highly similar to Calnexin" [Homo sapiens (taxid:9606)]

 Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
 Identities = 136/246 (55%), Positives = 176/246 (71%)

Query:   223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
             G+W +E +K   L GD GLV  S+AKHHAISA L+KPF+F+  P ++QYEV FQ+  +CG
Sbjct:   137 GKWEVEEMKESKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECG 196

Query:   283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
             GAY+KLL++ P L +L  F+DKTPYTIMFGPDKCG D K+HFI RH+NP  G   EKH K
Sbjct:   197 GAYVKLLSKTPEL-NLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGIYEEKHAK 255

Query:   343 AIKPSVNL---YSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
               +P  +L   ++++  HLYTL+L PDN + + +D  +   G+LL++ T  PP+NP +EI
Sbjct:   256 --RPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLLNDMT--PPVNPSREI 311

Query:   400 VDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSA 459
              D  D+KP  WDER KIPDPE  KP+DWDED P +I D EA KP+GWL DEP+ +PDP A
Sbjct:   312 EDPEDRKPEDWDERPKIPDPEAVKPDDWDEDAPAKIPDEEATKPEGWLDDEPEYVPDPDA 371

Query:   460 VKPADW 465
              KP DW
Sbjct:   372 EKPEDW 377

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|P27824 CANX "Calnexin" [Homo sapiens (taxid:9606)]

 Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
 Identities = 136/246 (55%), Positives = 176/246 (71%)

Query:   223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
             G+W +E +K   L GD GLV  S+AKHHAISA L+KPF+F+  P ++QYEV FQ+  +CG
Sbjct:   102 GKWEVEEMKESKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECG 161

Query:   283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
             GAY+KLL++ P L +L  F+DKTPYTIMFGPDKCG D K+HFI RH+NP  G   EKH K
Sbjct:   162 GAYVKLLSKTPEL-NLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGIYEEKHAK 220

Query:   343 AIKPSVNL---YSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
               +P  +L   ++++  HLYTL+L PDN + + +D  +   G+LL++ T  PP+NP +EI
Sbjct:   221 --RPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLLNDMT--PPVNPSREI 276

Query:   400 VDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSA 459
              D  D+KP  WDER KIPDPE  KP+DWDED P +I D EA KP+GWL DEP+ +PDP A
Sbjct:   277 EDPEDRKPEDWDERPKIPDPEAVKPDDWDEDAPAKIPDEEATKPEGWLDDEPEYVPDPDA 336

Query:   460 VKPADW 465
              KP DW
Sbjct:   337 EKPEDW 342

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0007568 "aging" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0032839 "dendrite cytoplasm" evidence=IEA

GO:0034185 "apolipoprotein binding" evidence=IEA

GO:0035255 "ionotropic glutamate receptor binding" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0043197 "dendritic spine" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=NAS

GO:0048488 "synaptic vesicle endocytosis" evidence=ISS

GO:0072583 "clathrin-mediated endocytosis" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009306 "protein secretion" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0005788 "endoplasmic reticulum lumen" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=TAS

UNIPROTKB|Q5R440 CANX "Calnexin" [Pongo abelii (taxid:9601)]

 Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
 Identities = 135/246 (54%), Positives = 176/246 (71%)

Query:   223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
             G+W ++ +K   L GD GLV  S+AKHHAISA L+KPF+F+  P ++QYEV FQ+  +CG
Sbjct:   102 GKWEVDEMKESKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECG 161

Query:   283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
             GAY+KLL++ P L +L  F+DKTPYTIMFGPDKCG D K+HFI RH+NP  G   EKH K
Sbjct:   162 GAYVKLLSKTPEL-NLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGIYEEKHAK 220

Query:   343 AIKPSVNL---YSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
               +P  +L   ++++  HLYTL+L PDN + + +D  +   G+LL++ T  PP+NP +EI
Sbjct:   221 --RPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLLNDMT--PPVNPSREI 276

Query:   400 VDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSA 459
              D  D+KP  WDER KIPDPE  KP+DWDED P +I D EA KP+GWL DEP+ +PDP A
Sbjct:   277 EDPEDRKPEDWDERPKIPDPEAVKPDDWDEDAPAKIPDEEATKPEGWLDDEPEYVPDPDA 336

Query:   460 VKPADW 465
              KP DW
Sbjct:   337 EKPEDW 342

GO:0048488 "synaptic vesicle endocytosis" evidence=ISS

GO:0072583 "clathrin-mediated endocytosis" evidence=ISS

UNIPROTKB|F1P8B4 CANX "Calnexin" [Canis lupus familiaris (taxid:9615)]

 Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
 Identities = 135/246 (54%), Positives = 176/246 (71%)

Query:   223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
             G+W ++ +K   L GD GLV  S+AKHHAISA L+KPF+F+  P ++QYEV FQ+  +CG
Sbjct:   103 GKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECG 162

Query:   283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
             GAY+KLL++ P L +L  F+DKTPYTIMFGPDKCG D K+HFI RH+NP  G   EKH K
Sbjct:   163 GAYVKLLSKTPEL-NLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAK 221

Query:   343 AIKPSVNL---YSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
               +P  +L   ++++  HLYTL+L PDN + + +D  +   G+LL++ T  PP+NP +EI
Sbjct:   222 --RPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLLNDMT--PPVNPSREI 277

Query:   400 VDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSA 459
              D  D+KP  WDER KIPDP+  KP+DWDED P +I D EA KPDGWL DEP+ +PDP A
Sbjct:   278 EDPEDQKPEDWDERPKIPDPDAVKPDDWDEDAPAKIPDEEATKPDGWLDDEPEYVPDPDA 337

Query:   460 VKPADW 465
              KP DW
Sbjct:   338 EKPEDW 343

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|J9PAB2 CANX "Calnexin" [Canis lupus familiaris (taxid:9615)]

 Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
 Identities = 135/246 (54%), Positives = 176/246 (71%)

Query:   223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
             G+W ++ +K   L GD GLV  S+AKHHAISA L+KPF+F+  P ++QYEV FQ+  +CG
Sbjct:   104 GKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECG 163

Query:   283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
             GAY+KLL++ P L +L  F+DKTPYTIMFGPDKCG D K+HFI RH+NP  G   EKH K
Sbjct:   164 GAYVKLLSKTPEL-NLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAK 222

Query:   343 AIKPSVNL---YSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
               +P  +L   ++++  HLYTL+L PDN + + +D  +   G+LL++ T  PP+NP +EI
Sbjct:   223 --RPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLLNDMT--PPVNPSREI 278

Query:   400 VDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSA 459
              D  D+KP  WDER KIPDP+  KP+DWDED P +I D EA KPDGWL DEP+ +PDP A
Sbjct:   279 EDPEDQKPEDWDERPKIPDPDAVKPDDWDEDAPAKIPDEEATKPDGWLDDEPEYVPDPDA 338

Query:   460 VKPADW 465
              KP DW
Sbjct:   339 EKPEDW 344

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|J9NUT1 CANX "Calnexin" [Canis lupus familiaris (taxid:9615)]

 Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
 Identities = 135/246 (54%), Positives = 176/246 (71%)

Query:   223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
             G+W ++ +K   L GD GLV  S+AKHHAISA L+KPF+F+  P ++QYEV FQ+  +CG
Sbjct:   103 GKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECG 162

Query:   283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
             GAY+KLL++ P L +L  F+DKTPYTIMFGPDKCG D K+HFI RH+NP  G   EKH K
Sbjct:   163 GAYVKLLSKTPEL-NLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAK 221

Query:   343 AIKPSVNL---YSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
               +P  +L   ++++  HLYTL+L PDN + + +D  +   G+LL++ T  PP+NP +EI
Sbjct:   222 --RPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLLNDMT--PPVNPSREI 277

Query:   400 VDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSA 459
              D  D+KP  WDER KIPDP+  KP+DWDED P +I D EA KPDGWL DEP+ +PDP A
Sbjct:   278 EDPEDQKPEDWDERPKIPDPDAVKPDDWDEDAPAKIPDEEATKPDGWLDDEPEYVPDPDA 337

Query:   460 VKPADW 465
              KP DW
Sbjct:   338 EKPEDW 343

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|E2RA18 CLGN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
 Identities = 144/246 (58%), Positives = 172/246 (69%)

Query:   223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
             G+W IE LK + + GD GLV KS+AKHHAI+A L KPFIF   P ++QYEV FQD  DCG
Sbjct:   103 GRWEIEELKENRVPGDRGLVLKSRAKHHAIAAVLAKPFIFADKPLIVQYEVNFQDGIDCG 162

Query:   283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
             GAY+KLL +   L +L  F DKT YTIMFGPDKCG D K+HFI RH++P  G   EKH K
Sbjct:   163 GAYIKLLADTDGL-NLENFYDKTSYTIMFGPDKCGEDYKLHFIFRHKHPKTGVFEEKHAK 221

Query:   343 AIKPSVNL---YSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
                P V+L   +++   HLYTLV+ PD+ + V ID  +  +G LL++    PPINPPKEI
Sbjct:   222 P--PDVDLKKFFTDRKTHLYTLVMNPDDTFEVLIDQVVVNQGSLLEDVV--PPINPPKEI 277

Query:   400 VDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSA 459
              D +DKKP  WDER KIPDP   KPEDWDE EP +IED+   KPDGWL DEPK IPDP+A
Sbjct:   278 EDPSDKKPDEWDERAKIPDPSAVKPEDWDESEPAQIEDLSVVKPDGWLDDEPKFIPDPNA 337

Query:   460 VKPADW 465
              KP DW
Sbjct:   338 EKPDDW 343

GO:0007339 "binding of sperm to zona pellucida" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

ZFIN|ZDB-GENE-040426-2797 canx "calnexin" [Danio rerio (taxid:7955)]

 Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
 Identities = 143/246 (58%), Positives = 171/246 (69%)

Query:   223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
             G+W +E ++   L GD GLV KSKAKHHAISA L +PF F+  P ++QYEV FQ   DCG
Sbjct:   110 GKWEVEEMQDSKLPGDKGLVLKSKAKHHAISALLLRPFTFDTKPLIVQYEVNFQTGIDCG 169

Query:   283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
             GAY+KLL++ P L DL  F DKTPYTIMFGPDKCG D K+HFI RH+NP  G   EKH K
Sbjct:   170 GAYVKLLSQTPDL-DLEEFVDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGEFEEKHAK 228

Query:   343 AIKPSVNL---YSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
               KP  +L   Y+++  HLYTLVL PDN + + ID  +   G LL++ T  PP+NPP EI
Sbjct:   229 --KPDSDLRSYYTDKKTHLYTLVLNPDNTFEILIDQTVVNSGSLLNDVT--PPVNPPAEI 284

Query:   400 VDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSA 459
              D +D KP  WDER KI DP+  KPEDWDED P +I D +A KPDGWL DEP+ I DP A
Sbjct:   285 EDPDDHKPEDWDERPKIQDPDAVKPEDWDEDAPAKIADEDAVKPDGWLDDEPEYISDPDA 344

Query:   460 VKPADW 465
             VKP DW
Sbjct:   345 VKPEDW 350

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P27824	CALX_HUMAN	No assigned EC number	0.5528	0.5118	0.4020	yes	N/A
P52194	CLGN_MOUSE	No assigned EC number	0.5772	0.5118	0.3895	yes	N/A
Q5R440	CALX_PONAB	No assigned EC number	0.5487	0.5118	0.4020	yes	N/A
Q6Q487	CALX_ASPFU	No assigned EC number	0.5059	0.5204	0.4298	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	465
pfam00262	359	pfam00262, Calreticulin, Calreticulin family	1e-103
pfam00262	359	pfam00262, Calreticulin, Calreticulin family	2e-31
cd03507	222	cd03507, Delta12-FADS-like, The Delta12 Fatty Acid	0.002

>gnl|CDD|215825 pfam00262, Calreticulin, Calreticulin family

 Score =  310 bits (797), Expect = e-103
 Identities = 134/253 (52%), Positives = 162/253 (64%), Gaps = 11/253 (4%)

Query: 215 SGASKDWLGQWSIEPLKLHP-LVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEV 273
           S A KD  G+W +E  K +     D GLV K  AK +AISA   KPF       V+QYEV
Sbjct: 20  SKAKKDDDGKWKVEAGKFYGGEEKDKGLVTKDDAKFYAISAKFPKPFSNKGKTLVVQYEV 79

Query: 274 MFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDK-VHFIIRHRNPL 332
             Q   DCGGAY+KLL++     D   F+ +TPYTIMFGPD CG+D K VHFI RH+ P+
Sbjct: 80  KLQQGIDCGGAYIKLLSKDF---DQKDFSGETPYTIMFGPDICGSDTKKVHFIFRHK-PI 135

Query: 333 NGSITEKHHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPP 392
            G   EKH   IK  ++   ++  HLYTL++ PDN + + ID E+   G LL++  F+PP
Sbjct: 136 TGYKEEKH--LIKKPISRC-DKLTHLYTLIIRPDNTFEILIDGEVVKSGSLLED--FDPP 190

Query: 393 INPPKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPK 452
            NPPKEI D  DKKP  WD+REKIPDPE  KPEDWDEDEP  I D  A KP+GWL DEP+
Sbjct: 191 FNPPKEIPDPTDKKPEDWDDREKIPDPEAKKPEDWDEDEPEFIPDPNAVKPEGWLEDEPE 250

Query: 453 LIPDPSAVKPADW 465
            IPDP A KP DW
Sbjct: 251 YIPDPDATKPEDW 263

Length = 359

>gnl|CDD|215825 pfam00262, Calreticulin, Calreticulin family

 Score =  123 bits (311), Expect = 2e-31
 Identities = 48/77 (62%), Positives = 54/77 (70%), Gaps = 2/77 (2%)

Query: 37  DKEMDGEWEAPQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMI 96
           D E DGEWEAP I NP C  A GC     P+IKNPK+KGKW PPMI+NPNY G W PR I
Sbjct: 264 DDEEDGEWEAPMIPNPKCEKACGC--GKPPMIKNPKYKGKWKPPMIDNPNYKGVWKPRKI 321

Query: 97  PNPEYYHDAEPFKLFPI 113
           PNP+Y+ D  P+ L PI
Sbjct: 322 PNPDYFEDPNPYNLEPI 338

Length = 359

>gnl|CDD|239584 cd03507, Delta12-FADS-like, The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 14/85 (16%)

Query: 187 YTQENPWLWAVYVIVTGVFVVLFYVL---CCSGA---SK---DWLGQWSIEPLKLHPLVG 237
               + WLW +Y IV G+F+   +VL   C  G+   ++   D +G   +    L P   
Sbjct: 25  SLLLSWWLWPLYWIVQGLFLTGLFVLGHDCGHGSFSDNRRLNDIVG-HILHSPLLVPYHS 83

Query: 238 DSGLVQKSKAKHHAISANLDKPFIF 262
                + S  +HHA + NL+   ++
Sbjct: 84  ----WRISHNRHHAHTGNLEGDEVW 104

The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which catalyzes the hydroxylation of oleate to ricinoleate. Plastid-bound desaturases (Arabidopsis delta-12 desaturase (FAD6), omega-3 desaturase (FAD8), omega-6 desaturase (FAD6)), as well as, the cyanobacterial thylakoid-bound FADSs require oxygen, ferredoxin, and ferredoxin oxidoreductase for activity. As in higher plants, the cyanobacteria delta-12 (DesA) and omega-3 (DesB) FADSs desaturate oleate (18:1) to linoleate (18:2) and linoleate (18:2) to linolenate (18:3), respectively. Omega-3 (DesB/FAD8) and omega-6 (DesD/FAD6) desaturases catalyze reactions that introduce a double bond between carbons three and four, and carbons six and seven, respectively, from the methyl end of fatty acids. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within the homologue, stearoyl CoA desaturase. Mutation of any one of four of these histidines in the Synechocystis delta-12 acyl-lipid desaturase resulted in complete inactivity. Length = 222

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	465
PF00262	367	Calreticulin: Calreticulin family; InterPro: IPR00	100.0
KOG0675|consensus	558		100.0
KOG0674|consensus	406		100.0
KOG0675|consensus	558		100.0
PF00262	367	Calreticulin: Calreticulin family; InterPro: IPR00	100.0
KOG0674|consensus	406		99.97
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	83.47

>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes

Probab=100.00  E-value=7.2e-97  Score=752.86  Aligned_cols=240  Identities=58%  Similarity=1.044  Sum_probs=192.2

Q ss_pred             CCccceEEeccCCCC-CCCCCcceeeCCccchhhhhccCCCccccCCCceEEEEEEEeecccccccceEEEccCCCCcCC
Q psy7421         219 KDWLGQWSIEPLKLH-PLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQD  297 (465)
Q Consensus       219 Kky~GkW~~~~~~~~-~~~~DkGLv~~~~ak~yaISa~l~kPf~~~~k~LVvQYeVk~q~~idCGGaYIKLl~~~~~~~d  297 (465)
                      .+|.|+|++++++.+ +.++|+||||+++|||||||++|++||++++|+||||||||||++|+|||||||||+++   .+
T Consensus        29 ~~y~G~W~~~~~~~~~~~~~DkGLv~~~~ak~yaIS~kl~kPf~~~~k~LVvQYeVK~q~~idCGGaYIKLL~~~---~~  105 (367)
T PF00262_consen   29 AKYDGKWELEAGKWYPGFEGDKGLVTKSDAKHYAISAKLDKPFSNKDKDLVVQYEVKFQQGIDCGGAYIKLLPAS---FD  105 (367)
T ss_dssp             -----EEEEEB-SSTSSTTTTBEEEEESSSEEEEEEEEEEEEE-STTS-EEEEEEEEETT--SEEE--EEEEBTT---SS
T ss_pred             ccCceEEEEecccccCCCcCceeeEeccchhhhhhhhhCCCccccCCCcEEEEEEEEeecceeccceEEEEecCc---cc
Confidence            468999999999776 88899999999999999999999999999999999999999999999999999999986   45


Q ss_pred             cc-cCCCCCCceEeeccCCcCCCCeEEEEEeecCCCCCcccccccccCCCCccccCCCCceeEEEEEecCCeEEEEEccE
Q psy7421         298 LT-AFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYIDNE  376 (465)
Q Consensus       298 ~~-~f~~~TpY~IMFGPD~CG~~~kvHfI~~~knp~~~~~eek~~~~~~~~l~~~~D~~tHLYTLIi~pdnTyeI~IDg~  376 (465)
                      +. +|+++|||+||||||+||+++||||||||+||++++++|+|+++++  +++.+|++||||||||||||||||||||+
T Consensus       106 ~~~~f~~~TpY~IMFGPD~CG~~~kvHfI~~~~nP~~~~~~e~~l~~~p--~~~~~D~~tHlYTLii~~dntyeI~IDg~  183 (367)
T PF00262_consen  106 QEENFSDKTPYSIMFGPDKCGSSNKVHFIFRHKNPITGEIEEKHLKKPP--ISCFTDKLTHLYTLIIRPDNTYEIRIDGE  183 (367)
T ss_dssp             GGGG-STTS-ESEEEEEEEESTTEEEEEEEEEE-TTTEETTEEEE-SSS--SB-HHSSSEEEEEEEEETTTEEEEEETTE
T ss_pred             hhhhcCCCCCceEEeCCccCCCCceEEEEEEecCCCCCcccceecccCC--cccccCCCcceEEEEEcCCCeEEEEECCE
Confidence            55 9999999999999999999999999999999999999999999875  45689999999999999999999999999


Q ss_pred             EEEeeccccCCCCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCC
Q psy7421         377 LNIEGHLLDEGTFNPPINPPKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPD  456 (465)
Q Consensus       377 ~v~~GsL~~d~~f~P~~~pPk~I~DP~d~KP~DWdD~~~I~DP~~~KPeDWDE~~P~~IpDp~a~KP~dW~d~ep~~Ipd  456 (465)
                      ++.+|||++|  |+|||+|||+|+||+|+||+|||||++|+||+|+|||||||++|++|+||+|+||++|+|+||+||||
T Consensus       184 ~~~~G~L~~d--f~Pp~~ppk~I~Dp~d~KP~DW~d~~~I~Dp~~~KPedWdE~~p~~I~D~~a~kP~~W~edep~~IpD  261 (367)
T PF00262_consen  184 VVKSGSLLED--FDPPFNPPKEIDDPNDKKPEDWDDREKIPDPNAKKPEDWDEDEPEFIPDPDAVKPEGWLEDEPEYIPD  261 (367)
T ss_dssp             EEEEEEHHHH--SE--ESS-SCEE-TTT--TTT-TTTSEEC-SSTT--TTTSSS--SEEE-TT----SS-BSSS-SEEE-
T ss_pred             Eeeccccccc--cccCcCChhcccCccccCCcchhhhcccCCccccCcccccccCcccccCccccCCcchhhCCCcccCC
Confidence            9999999999  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCC
Q psy7421         457 PSAVKPADW  465 (465)
Q Consensus       457 P~~~kP~dW  465 (465)
                      |+|+||+||
T Consensus       262 p~a~kP~dW  270 (367)
T PF00262_consen  262 PEAKKPEDW  270 (367)
T ss_dssp             TT--S-TT-
T ss_pred             CCCCCCCCC
Confidence            999999999

It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....

>KOG0675|consensus

Probab=100.00  E-value=8.2e-91  Score=720.48  Aligned_cols=246  Identities=57%  Similarity=1.059  Sum_probs=239.9

Q ss_pred             CCCccceEEeccCCCCCCCCCcceeeCCccchhhhhccCCCccccCCCceEEEEEEEeecccccccceEEEccCCCCcCC
Q psy7421         218 SKDWLGQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQD  297 (465)
Q Consensus       218 sKky~GkW~~~~~~~~~~~~DkGLv~~~~ak~yaISa~l~kPf~~~~k~LVvQYeVk~q~~idCGGaYIKLl~~~~~~~d  297 (465)
                      ..+|+|+|.++++...+.++|+||++++.|||||||+.|++||++..++||||||||+|+|++|||||||||+......+
T Consensus        70 i~kY~G~W~~ee~~~~~~~~D~GLvvkskakhhaI~a~L~~P~~~~~~plVVQYEvk~qeg~eCGGAYlKLLs~~~~~~~  149 (558)
T KOG0675|consen   70 IAKYDGVWDLEEPPKSHLAGDYGLVVKSKAKHHAISAELEEPFNFKEKPLVVQYEVKFQEGLECGGAYLKLLSQGTAGEN  149 (558)
T ss_pred             hhhccceeeeccCccccCCcccceEeeccchhhHHHhhhcCCcccCCCCeEEEEEEecCCCcccchhHHHhhcccccccc
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999998446789


Q ss_pred             cccCCCCCCceEeeccCCcCCCCeEEEEEeecCCCCCcccccccccCCCCc-cccCCCCceeEEEEEecCCeEEEEEccE
Q psy7421         298 LTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHKAIKPSV-NLYSNESPHLYTLVLYPDNKYAVYIDNE  376 (465)
Q Consensus       298 ~~~f~~~TpY~IMFGPD~CG~~~kvHfI~~~knp~~~~~eek~~~~~~~~l-~~~~D~~tHLYTLIi~pdnTyeI~IDg~  376 (465)
                      +++|+++|||+||||||+||.++||||||||+||+||+++|||++.|++++ ..++|++||||||||+|||||+|||||+
T Consensus       150 l~~f~dktpy~ImFGPDKCG~~~kvhFIf~hknp~tG~~~ekh~~~pp~~l~~~~~d~~tHLYTLvl~pd~sfeI~vDg~  229 (558)
T KOG0675|consen  150 LKNFDDKTPYTIMFGPDKCGETNKVHFIFRHKNPITGEISEKHLKAPPSSLKKPFDDKLTHLYTLVLKPDNTFEIRVDGK  229 (558)
T ss_pred             hhccCCCCCeEEEeCccccCCcccEEEEEeeccCCCCeeehhhccCCCcccccccccCCceeEEEEecCCCeEEEEecCc
Confidence            999999999999999999999999999999999999999999999999877 6788999999999999999999999999


Q ss_pred             EEEeeccccCCCCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCC
Q psy7421         377 LNIEGHLLDEGTFNPPINPPKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPD  456 (465)
Q Consensus       377 ~v~~GsL~~d~~f~P~~~pPk~I~DP~d~KP~DWdD~~~I~DP~~~KPeDWDE~~P~~IpDp~a~KP~dW~d~ep~~Ipd  456 (465)
                      +|+.|||++|  |.||++||++|+||+|.||+|||+|++||||+|+||+||||++|.+|||++|+||++|+|+||.||+|
T Consensus       230 vv~~G~ll~D--f~Ppv~Pp~eI~Dp~d~KP~dWDer~kIpDpnAvKPdDWDE~~P~~Ipd~davkP~~Wledep~~I~D  307 (558)
T KOG0675|consen  230 VVYKGSLLTD--FEPPVTPPKEIPDPSDKKPEDWDERAKIPDPNAVKPDDWDEDAPLSIPDEDAVKPEGWLEDEPEYIPD  307 (558)
T ss_pred             EEEecccccc--cCCCCCCccccCCcccCCccchhhhhcCCCcccCCccccCcCCCccCCCccccCCccccccCCcccCC
Confidence            9999999999  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCC
Q psy7421         457 PSAVKPADW  465 (465)
Q Consensus       457 P~~~kP~dW  465 (465)
                      |+|+||+||
T Consensus       308 P~A~KPedW  316 (558)
T KOG0675|consen  308 PEAQKPEDW  316 (558)
T ss_pred             cccCCCCCC
Confidence            999999999

>KOG0674|consensus

Probab=100.00  E-value=9.5e-80  Score=610.03  Aligned_cols=221  Identities=41%  Similarity=0.723  Sum_probs=209.8

Q ss_pred             ccceEEeccCCCCCCCC-CcceeeCCccchhhhhccCCCccccCCCceEEEEEEEeecccccccceEEEccCCCCcCCcc
Q psy7421         221 WLGQWSIEPLKLHPLVG-DSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLT  299 (465)
Q Consensus       221 y~GkW~~~~~~~~~~~~-DkGLv~~~~ak~yaISa~l~kPf~~~~k~LVvQYeVk~q~~idCGGaYIKLl~~~~~~~d~~  299 (465)
                      --|+|++++|++++.++ |+||+|++++||||||++|+ ||+|++|+|||||+|||+|+|+|||||||||++.   +||.
T Consensus        46 ~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~sa~F~-~FsnK~kTLv~q~tVkheQ~~dcgggyiKl~~~d---~Dq~  121 (406)
T KOG0674|consen   46 DFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAISAKFK-PFSNKGKTLVIQFTVKHEQKIDCGGGYIKLFPAD---LDQT  121 (406)
T ss_pred             ccCceEeccccccCcccccccccccccceeeeeecccc-cccccCceEEEEEEecccccccCCceeEEeeecc---cchh
Confidence            55999999999999988 99999999999999999995 7999999999999999999999999999999875   8999


Q ss_pred             cCCCCCCceEeeccCCcCC-CCeEEEEEeecCCCCCcccccccccCCCCccccCCCCceeEEEEEecCCeEEEEEccEEE
Q psy7421         300 AFNDKTPYTIMFGPDKCGT-DDKVHFIIRHRNPLNGSITEKHHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYIDNELN  378 (465)
Q Consensus       300 ~f~~~TpY~IMFGPD~CG~-~~kvHfI~~~knp~~~~~eek~~~~~~~~l~~~~D~~tHLYTLIi~pdnTyeI~IDg~~v  378 (465)
                      +|+++|||.||||||+||+ ++|||+||+|++.       +|+.+  +.|+|++|++|||||||||||+||+|+|||+.+
T Consensus       122 ~f~ges~y~iMfGPDICG~~tkKVhvil~ykg~-------nhlik--K~i~Ck~D~~tHlYTlIlRPd~TYeVkIDn~~~  192 (406)
T KOG0674|consen  122 DFHGESPYNIMFGPDICGFGTKKVHVILNYKGK-------NHLIK--KDIRCKDDELTHLYTLILRPDATYEVKIDNQQV  192 (406)
T ss_pred             hcCCCcccccccCCcccCCCCceEEEEEecccc-------cchhc--cccccccCCcceeEEEEecCCCeeEEEEccccc
Confidence            9999999999999999998 5799999999883       36654  568999999999999999999999999999999


Q ss_pred             EeeccccCCCCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCC-----CCC
Q psy7421         379 IEGHLLDEGTFNPPINPPKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDE-----PKL  453 (465)
Q Consensus       379 ~~GsL~~d~~f~P~~~pPk~I~DP~d~KP~DWdD~~~I~DP~~~KPeDWDE~~P~~IpDp~a~KP~dW~d~e-----p~~  453 (465)
                      .+|||++||+    |+|||.|.||.++||+|||+|+.|+||+|+||+||+  .|++||||+|+||+||++++     +||
T Consensus       193 esGsle~DWd----ll~~KKikdP~a~KPedWDer~~I~DpeD~Kp~dwe--~pehipDpdakKpedWddemDGEWe~P~  266 (406)
T KOG0674|consen  193 ESGSLEDDWD----LLPPKKIKDPDAKKPEDWDEREYIPDPEDKKPQDWE--KPEHIPDPDAKKPEDWDDEMDGEWEAPM  266 (406)
T ss_pred             ccCccccccc----cccccccCCccccCcccchhhccCCCccccCccccc--cccccCCcccCCcccccccccCCcCCCC
Confidence            9999999988    599999999999999999999999999999999998  79999999999999999984     999


Q ss_pred             CCCCCCC
Q psy7421         454 IPDPSAV  460 (465)
Q Consensus       454 IpdP~~~  460 (465)
                      ||||+|+
T Consensus       267 i~nPey~  273 (406)
T KOG0674|consen  267 IPNPEYK  273 (406)
T ss_pred             CCCcccc
Confidence            9999987

>KOG0675|consensus

Probab=100.00  E-value=4.3e-54  Score=447.02  Aligned_cols=167  Identities=44%  Similarity=0.874  Sum_probs=160.2

Q ss_pred             cCCCCCCCCCccCCCCCCCcccCCCCCCCCCCCccCCCCCCcCCCCCccCCCCCCCCCcCCcCCCCCCCCCCCCCccCCc
Q psy7421          34 RTNDKEMDGEWEAPQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMIPNPEYYHDAEPFKLFPI  113 (465)
Q Consensus        34 ~~wd~e~dGeWe~p~i~NP~c~~~~gcG~W~~P~I~NP~YKG~W~pp~I~NP~YkG~W~prkI~NP~y~ed~~p~~~~~i  113 (465)
                      .+||+|+|||||||+|.||+|..++|||+|+||||+||+|||+|.+|||+||||+|+|+||+|+||+|||+.+|+.+.+|
T Consensus       314 edWdee~dGeWeap~I~NP~C~~~~GCG~wk~p~I~NP~YKGkw~~pmI~NP~y~G~W~PRkI~NPdyfEd~~p~~~~pI  393 (558)
T KOG0675|consen  314 EDWDEEEDGEWEAPMIINPKCKEASGCGEWKPPMINNPNYKGKWILPMIDNPNYQGIWKPRKIPNPDYFEDDKPFTLTPI  393 (558)
T ss_pred             CCCCccccCccccccccCchhhcCCCCCcccCcccCCCccCCCCccccccCccccCccccccCCCcccccccCcccccch
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeeeeeehhhhhhcccCccceeeccccceeeeeEEecCCHHHHHHHHHHHhHhhhhcccCchHHHHHHhhhhcCCce
Q psy7421         114 VSTLQEQVEKKNRIFSRYLSPKIQKYINYQNVYFDNIIITESLDEAKQFAEATFKQKLSKRTNDKSFVSMVMKYTQENPW  193 (465)
Q Consensus       114 ~~~g~e~v~~~~~i~~~~~~~~ie~w~~~~~~~FDNilItdd~~~A~~~~~~t~~~k~~~~~~~~~~~~~~~~~a~enPw  193 (465)
                      .|+|+                  |+|+|+++|+|||||||+|+++|+.+|+.||..|+...++.+ +++++|++|+.+||
T Consensus       394 savgl------------------ElWsMs~~IlfdNi~i~~~~e~a~~~~~~tw~~K~~~~~e~~-~~~~~~~~~~~~~~  454 (558)
T KOG0675|consen  394 SAVGL------------------ELWSMSSNILFDNIIITKDIEVAEDIANFTWLLKAAAEREKP-FVQQVMEAAEGHPW  454 (558)
T ss_pred             hhhhh------------------hhhhcCCCceeceeEEeccHHHHHHhhhhceeeehhhcccch-HHHHHHhhccccch
Confidence            99985                  689999999999999999999999999999999988888777 99999999999999


Q ss_pred             eeehhHHHHHHHHHHHhhhhccCCCC
Q psy7421         194 LWAVYVIVTGVFVVLFYVLCCSGASK  219 (465)
Q Consensus       194 lwiVyil~v~LpVvL~~lfCcsgksK  219 (465)
                      ||++|+++++++|+++..|||+++++
T Consensus       455 ~w~~~i~~~~~~v~~i~~~c~~~k~k  480 (558)
T KOG0675|consen  455 LWAIYILTLLLPVADITKFCAPVKSK  480 (558)
T ss_pred             HHHHHHHHhhhhHhhhhhcccccccc
Confidence            99999999999999999999996554

>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes

Probab=100.00  E-value=9.6e-42  Score=348.57  Aligned_cols=109  Identities=50%  Similarity=1.051  Sum_probs=66.4

Q ss_pred             HhhcccccCc--CCCCCCCCCccCCCCCCCcccCCCCCCCCCCCccCCCCCCcCCCCCccCCCCCCCCCcCCcCCCCCCC
Q psy7421          25 ATFKQKLSKR--TNDKEMDGEWEAPQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMIPNPEYY  102 (465)
Q Consensus        25 ~~~~~~~~~~--~wd~e~dGeWe~p~i~NP~c~~~~gcG~W~~P~I~NP~YKG~W~pp~I~NP~YkG~W~prkI~NP~y~  102 (465)
                      ++.-||.+++  +||+|+||||+||+|+||+|.. +|||+|+||||.||+|||+|+||||+||||||+|+||+|+||+||
T Consensus       257 ~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~-~gCG~w~~p~i~Np~YkG~W~pp~I~NP~YkG~W~p~~I~NP~y~  335 (367)
T PF00262_consen  257 EYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKE-PGCGEWKPPMIKNPNYKGKWKPPMIPNPNYKGEWKPRKIPNPDYF  335 (367)
T ss_dssp             SEEE-TT--S-TT--CCCCSS----EEE-CGGTT-S-BSS----EEE-TT--SS----EEE-TT---S----EEE-TT--
T ss_pred             cccCCCCCCCCCCCCccccCCccCCccCCCcccC-CCccccccccccCccccCCccccccCCccccccccccccCCCccc
Confidence            3445666654  7999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccCCceeeeeeeeeehhhhhhcccCccceeeccccceeeeeEEe
Q psy7421         103 HDAEPFKLFPIVSTLQEQVEKKNRIFSRYLSPKIQKYINYQNVYFDNIII  152 (465)
Q Consensus       103 ed~~p~~~~~i~~~g~e~v~~~~~i~~~~~~~~ie~w~~~~~~~FDNilI  152 (465)
                      +|.+|+++.+|+||||                  |||||++|++||||||
T Consensus       336 ~d~~p~~~~~i~~ig~------------------ElW~~~~~~~FDNi~i  367 (367)
T PF00262_consen  336 EDPNPYNFEPIGAIGF------------------ELWQMSSGIIFDNILI  367 (367)
T ss_dssp             SSTTTT--S-EEEEEE------------------EEEESSS-EEEEEEEE
T ss_pred             CCCCccccCceeEEEE------------------EEEeccCCceeeeEEC
Confidence            9999999999999985                  6899999999999998

It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....

>KOG0674|consensus

Probab=99.97  E-value=8.7e-31  Score=261.26  Aligned_cols=127  Identities=34%  Similarity=0.611  Sum_probs=114.3

Q ss_pred             hhcccccCc--CCCCC------CC---CCcc------CCCCCCCcccCCCCCCCCCCCccCCCCCCcCCCCCccCCCCCC
Q psy7421          26 TFKQKLSKR--TNDKE------MD---GEWE------APQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYN   88 (465)
Q Consensus        26 ~~~~~~~~~--~wd~e------~d---GeWe------~p~i~NP~c~~~~gcG~W~~P~I~NP~YKG~W~pp~I~NP~Yk   88 (465)
                      ..|+|.++.  +||+-      +|   -.|+      .|....|..++...+|+|+||||+||.|||.|+|++|+||+||
T Consensus       208 KikdP~a~KPedWDer~~I~DpeD~Kp~dwe~pehipDpdakKpedWddemDGEWe~P~i~nPey~gewkPkqi~np~yK  287 (406)
T KOG0674|consen  208 KIKDPDAKKPEDWDEREYIPDPEDKKPQDWEKPEHIPDPDAKKPEDWDDEMDGEWEAPMIPNPEYKGEWKPKQIKNPAYK  287 (406)
T ss_pred             ccCCccccCcccchhhccCCCccccCccccccccccCCcccCCcccccccccCCcCCCCCCCccccCccCcccccCcccc
Confidence            468898888  89876      22   3477      4556667778999999999999999999999999999999999


Q ss_pred             CCCcCCcCCCCCCCCCCCCCccCCceeeeeeeeeehhhhhhcccCccceeeccccceeeeeEEecCCHHHHHHHHHHHhH
Q psy7421          89 GKWAPRMIPNPEYYHDAEPFKLFPIVSTLQEQVEKKNRIFSRYLSPKIQKYINYQNVYFDNIIITESLDEAKQFAEATFK  168 (465)
Q Consensus        89 G~W~prkI~NP~y~ed~~p~~~~~i~~~g~e~v~~~~~i~~~~~~~~ie~w~~~~~~~FDNilItdd~~~A~~~~~~t~~  168 (465)
                      |.|.+++|.||+|-.|.++|.+.+|+++||                  |||||+||+||||||||||+++|+.+|++||+
T Consensus       288 g~w~hp~i~npey~~d~~ly~~~ni~~lgl------------------dLWQVKSgtIFDN~LitdD~eyA~k~~~eTwg  349 (406)
T KOG0674|consen  288 GKWIHPEIDNPEYPDDPELYHYENIGVLGL------------------DLWQVKSGTIFDNFLITDDEEYAEKFANETWG  349 (406)
T ss_pred             ceeeccccCCCcCCCCcceeeecccceeee------------------eEEEeecceeecceEecCCHHHHHHHHHhhhc
Confidence            999999999999999999999999998875                  68999999999999999999999999999999


Q ss_pred             hh
Q psy7421         169 QK  170 (465)
Q Consensus       169 ~k  170 (465)
                      +.
T Consensus       350 ~~  351 (406)
T KOG0674|consen  350 KT  351 (406)
T ss_pred             cc
Confidence            44

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=83.47  E-value=0.54  Score=42.14  Aligned_cols=22  Identities=14%  Similarity=0.807  Sum_probs=12.0

Q ss_pred             eehhHHHHHHHHHHHhhhhccC
Q psy7421         195 WAVYVIVTGVFVVLFYVLCCSG  216 (465)
Q Consensus       195 wiVyil~v~LpVvL~~lfCcsg  216 (465)
                      |++++++|++.+++++++||.+
T Consensus         2 W~l~~iii~~i~l~~~~~~~~~   23 (130)
T PF12273_consen    2 WVLFAIIIVAILLFLFLFYCHN   23 (130)
T ss_pred             eeeHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555543

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	465
1jhn_A	424	Crystal Structure Of The Lumenal Domain Of Calnexin		3e-72
3rg0_A	332	Structural And Functional Relationships Between The		2e-26
3o0v_A	273	Crystal Structure Of The Calreticulin Lectin Domain		3e-17
3pos_A	265	Crystal Structure Of The Globular Domain Of Human C		4e-17
3o0w_A	273	Structural Basis Of Carbohydrate Recognition By Cal		7e-16
1hhn_A	101	Calreticulin P-Domain Length = 101		1e-06
1hhn_A	101	Calreticulin P-Domain Length = 101		5e-04
1k9c_A	74	Solution Structure Of Calreticulin P-Domain Subdoma		8e-04

>pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain Of Calnexin Length = 424

Iteration: 1
 Score =  269 bits (687), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 134/246 (54%), Positives = 176/246 (71%), Gaps = 8/246 (3%)
Query: 223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
           G+W ++ +K   L GD GLV  S+AKHHAISA L+KPF+F+  P ++QYEV FQ+  +CG
Sbjct: 59  GKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECG 118
Query: 283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
           GAY+KLL++ P L +L  F+DKTPYTIMFGPDKCG D K+HFI RH+NP  G   EKH K
Sbjct: 119 GAYVKLLSKTPEL-NLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAK 177
Query: 343 AIKPSVNL---YSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
             +P  +L   ++++  HLYTL+L PDN + + +D  +   G+LL++ T  PP+NP +EI
Sbjct: 178 --RPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLLNDMT--PPVNPSREI 233
Query: 400 VDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSA 459
            D  D+KP  WDER KIPDP+  KP+DW+ED P +I D EA KPDGWL DEP+ +PDP A
Sbjct: 234 EDPEDQKPEDWDERPKIPDPDAVKPDDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPDA 293
Query: 460 VKPADW 465
            KP DW
Sbjct: 294 EKPEDW 299

>pdb|3RG0|A Chain A, Structural And Functional Relationships Between The Lectin And Arm Domains Of Calreticulin Length = 332

Iteration: 1
 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/210 (36%), Positives = 104/210 (49%), Gaps = 19/210 (9%)
Query: 222 LGQWSIEPLKLHP-LVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHD 280
            G++ +   K +  L  D GL     A+ +A+SA  + PF       V+Q+ V  +   D
Sbjct: 32  FGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKFE-PFSNKGQTLVVQFTVKHEQNID 90
Query: 281 CGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCG-TDDKVHFIIRHRNPLNGSITEK 339
           CGG Y+KL   G   +D+      + Y IMFGPD CG    KVH I  ++          
Sbjct: 91  CGGGYVKLFPSGLDQKDMHG---DSEYNIMFGPDICGPGTKKVHVIFNYKG--------- 138
Query: 340 HHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
            +  I   +    +E  HLYTL++ PDN Y V IDN     G L D+  F PP    K+I
Sbjct: 139 KNVLINKDIRSKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP----KKI 194
Query: 400 VDVNDKKPATWDEREKIPDPEVTKPEDWDE 429
            D +  KP  WDER KI DP  +KPEDWD+
Sbjct: 195 KDPDAAKPEDWDERAKIDDPTDSKPEDWDK 224

>pdb|3O0V|A Chain A, Crystal Structure Of The Calreticulin Lectin Domain Length = 273

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 81/173 (46%), Gaps = 15/173 (8%)
Query: 222 LGQWSIEPLKLHP-LVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHD 280
            G++ +   K +  L  D GL     A+ +A+SA  + PF       V+Q+ V  +   D
Sbjct: 32  FGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKFE-PFSNKGQTLVVQFTVKHEQNID 90
Query: 281 CGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCG-TDDKVHFIIRHRNPLNGSITEK 339
           CGG Y+KL   G   +D+      + Y IMFGPD CG    KVH I  ++          
Sbjct: 91  CGGGYVKLFPSGLDQKDMHG---DSEYNIMFGPDICGPGTKKVHVIFNYKGK-------- 139
Query: 340 HHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPP 392
            +  I   +    +E  HLYTL++ PDN Y V IDN     G L D+  F PP
Sbjct: 140 -NVLINKDIRSKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP 191

>pdb|3POS|A Chain A, Crystal Structure Of The Globular Domain Of Human Calreticulin Length = 265

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 75/160 (46%), Gaps = 14/160 (8%)
Query: 238 DSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQD 297
           D GL     A+ +A+SA+ + PF       V+Q+ V  +   DCGG Y+KL    P   D
Sbjct: 54  DKGLQTSQDARFYALSASFE-PFSNKGQTLVVQFTVKHEQNIDCGGGYVKLF---PNSLD 109
Query: 298 LTAFNDKTPYTIMFGPDKCG-TDDKVHFIIRHRNPLNGSITEKHHKAIKPSVNLYSNESP 356
            T  +  + Y IMFGPD CG    KVH I  ++           +  I   +    +E  
Sbjct: 110 QTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGK---------NVLINKDIRCKDDEFT 160
Query: 357 HLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPP 396
           HLYTL++ PDN Y V IDN     G L D+  F P    P
Sbjct: 161 HLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPGSGDP 200

>pdb|3O0W|A Chain A, Structural Basis Of Carbohydrate Recognition By Calreticulin Length = 273

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 79/173 (45%), Gaps = 15/173 (8%)
Query: 222 LGQWSIEPLKLHP-LVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHD 280
            G++ +   K +  L  D GL     A+ +A+SA  + PF       V+Q+ V  +   D
Sbjct: 32  FGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKFE-PFSNKGQTLVVQFTVKHEQNID 90
Query: 281 CGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCG-TDDKVHFIIRHRNPLNGSITEK 339
           CGG Y+KL   G   +D       + Y I FGPD CG    KVH I  ++          
Sbjct: 91  CGGGYVKLFPSGLDQKDXHG---DSEYNIXFGPDICGPGTKKVHVIFNYKGK-------- 139
Query: 340 HHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPP 392
            +  I   +    +E  HLYTL++ PDN Y V IDN     G L D+  F PP
Sbjct: 140 -NVLINKDIRSKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP 191

>pdb|1HHN|A Chain A, Calreticulin P-Domain Length = 101

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 19/69 (27%)
Query: 37  DKEMDGEWEAPQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMI 96
           D+EMDGEWE P                   +I+NP++KG+W P  I+NP+Y G W    I
Sbjct: 50  DEEMDGEWEPP-------------------VIQNPEYKGEWKPRQIDNPDYKGTWIHPEI 90
Query: 97  PNPEYYHDA 105
            NPEY  DA
Sbjct: 91  DNPEYSPDA 99

>pdb|1HHN|A Chain A, Calreticulin P-Domain Length = 101

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 34/69 (49%), Gaps = 21/69 (30%)
Query: 397 KEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPD 456
           K+I D +  KP  WDER KI DP  +KPEDW                     D+P+ IPD
Sbjct: 2   KKIKDPDAAKPEDWDERAKIDDPTDSKPEDW---------------------DKPEHIPD 40
Query: 457 PSAVKPADW 465
           P A KP DW
Sbjct: 41  PDAKKPEDW 49

>pdb|1K9C|A Chain A, Solution Structure Of Calreticulin P-Domain Subdomain (Residues 189-261) Length = 74

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 34/69 (49%), Gaps = 21/69 (30%)
Query: 397 KEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPD 456
           K+I D +  KP  WDER KI DP  +KPEDW                     D+P+ IPD
Sbjct: 2   KKIKDPDAAKPEDWDERAKIDDPTDSKPEDW---------------------DKPEHIPD 40
Query: 457 PSAVKPADW 465
           P A KP DW
Sbjct: 41  PDAKKPEDW 49

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	465
1jhn_A	424	Calnexin; jelly-roll, beta sandwich, chaperone; 2.	9e-83
1jhn_A	424	Calnexin; jelly-roll, beta sandwich, chaperone; 2.	1e-34
3rg0_A	332	Calreticulin; beta-sandwich, chaperone, monoglucos	3e-58
3rg0_A	332	Calreticulin; beta-sandwich, chaperone, monoglucos	5e-17
3pow_A	265	Calreticulin; legume lectin fold, CNX/CRT family,	5e-47
1hhn_A	101	Calreticulin; molecular chaperone; NMR {Rattus nor	1e-15
1hhn_A	101	Calreticulin; molecular chaperone; NMR {Rattus nor	2e-15
1hhn_A	101	Calreticulin; molecular chaperone; NMR {Rattus nor	1e-13
1hhn_A	101	Calreticulin; molecular chaperone; NMR {Rattus nor	3e-11
3ici_C	38	Calnexin, PP90; protein-protein complex, endoplasm	1e-05
3ici_C	38	Calnexin, PP90; protein-protein complex, endoplasm	2e-04

>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Length = 424

 Score =  260 bits (666), Expect = 9e-83
 Identities = 131/244 (53%), Positives = 171/244 (70%), Gaps = 4/244 (1%)

Query: 223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
           G+W ++ +K   L GD GLV  S+AKHHAISA L+KPF+F+  P ++QYEV FQ+  +CG
Sbjct: 59  GKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECG 118

Query: 283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
           GAY+KLL++ P L +L  F+DKTPYTIMFGPDKCG D K+HFI RH+NP  G   EKH K
Sbjct: 119 GAYVKLLSKTPEL-NLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAK 177

Query: 343 AIK-PSVNLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEIVD 401
                    ++++  HLYTL+L PDN + + +D  +   G+LL++    PP+NP +EI D
Sbjct: 178 RPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLLND--MTPPVNPSREIED 235

Query: 402 VNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSAVK 461
             D+KP  WDER KIPDP+  KP+DW+ED P +I D EA KPDGWL DEP+ +PDP A K
Sbjct: 236 PEDQKPEDWDERPKIPDPDAVKPDDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPDAEK 295

Query: 462 PADW 465
           P DW
Sbjct: 296 PEDW 299

>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Length = 424

 Score =  133 bits (335), Expect = 1e-34
 Identities = 56/134 (41%), Positives = 75/134 (55%), Gaps = 18/134 (13%)

Query: 37  DKEMDGEWEAPQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMI 96
           D++MDGEWEAPQI NP C  APGCG W  P+I NP +KGKW PPMI+NPNY G W PR I
Sbjct: 300 DEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKI 359

Query: 97  PNPEYYHDAEPFKLFPIVSTLQEQVEKKNRIFSRYLSPKIQKYINYQNVYFDNIIITESL 156
           PNP+++ D EPFK+ P  +                    ++ +    +++FDN I+    
Sbjct: 360 PNPDFFEDLEPFKMTPFSAIG------------------LELWSMTSDIFFDNFIVCGDR 401

Query: 157 DEAKQFAEATFKQK 170
                +A   +  K
Sbjct: 402 RVVDDWANDGWGLK 415

>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Length = 332

 Score =  194 bits (493), Expect = 3e-58
 Identities = 82/250 (32%), Positives = 110/250 (44%), Gaps = 33/250 (13%)

Query: 215 SGASKDWLGQWSIEPLKLHP-LVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEV 273
           S    D  G++ +   K +  L  D GL     A+ +A+SA  + PF       V+Q+ V
Sbjct: 26  SKHKSD-FGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKFE-PFSNKGQTLVVQFTV 83

Query: 274 MFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDD-KVHFIIRHRNPL 332
             +   DCGG Y+KL   G    D    +  + Y IMFGPD CG    KVH I  ++   
Sbjct: 84  KHEQNIDCGGGYVKLFPSG---LDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKN 140

Query: 333 NGSITEKHHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPP 392
                +   K          +E  HLYTL++ PDN Y V IDN     G L D    +  
Sbjct: 141 VLINKDIRSK---------DDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLED----DWD 187

Query: 393 INPPKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPK 452
             PPK+I D +  KP  WDER KI DP  +KPEDWD+                W   +P+
Sbjct: 188 FLPPKKIKDPDAAKPEDWDERAKIDDPTDSKPEDWDKGGS----------GGEW---KPR 234

Query: 453 LIPDPSAVKP 462
            I +P     
Sbjct: 235 QIDNPDYKGT 244

>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Length = 332

 Score = 81.3 bits (200), Expect = 5e-17
 Identities = 28/138 (20%), Positives = 44/138 (31%), Gaps = 26/138 (18%)

Query: 33  KRTNDKEMDGEWEAPQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWA 92
           K  +  + +   E  +I++P                      G+W P  I+NP+Y G W 
Sbjct: 195 KDPDAAKPEDWDERAKIDDPTDSKPEDWD--------KGGSGGEWKPRQIDNPDYKGTWI 246

Query: 93  PRMIPNPEYYHDAEPFKLFPIVSTLQEQVEKKNRIFSRYLSPKIQKYINYQNVYFDNIII 152
              I NPEY  DA  +                           +  +       FDN +I
Sbjct: 247 HPEIDNPEYSPDANIYAYDSFA------------------VLGLDLWQVKSGTIFDNFLI 288

Query: 153 TESLDEAKQFAEATFKQK 170
           T     A++F   T+   
Sbjct: 289 TNDEAYAEEFGNETWGVT 306

>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Length = 265

 Score =  162 bits (411), Expect = 5e-47
 Identities = 63/248 (25%), Positives = 95/248 (38%), Gaps = 25/248 (10%)

Query: 215 SGASKDWLGQWSIEPLKLHP-LVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEV 273
           S    D  G++ +   K +     D GL     A+ +A+SA+ + PF       V+Q+ V
Sbjct: 31  SKHKSD-FGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASFE-PFSNKGQTLVVQFTV 88

Query: 274 MFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDD-KVHFIIRHRNPL 332
             +   DCGG Y+KL        D T  +  + Y IMFGPD CG    KVH I  ++   
Sbjct: 89  KHEQNIDCGGGYVKLFPNS---LDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGK- 144

Query: 333 NGSITEKHHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPP 392
                      I   +    +E  HLYTL++ PDN Y V IDN     G L D+  F P 
Sbjct: 145 ------NVL--INKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPG 196

Query: 393 INPPK--EIVDVNDKKPATWDEREKIP------DPEVTKPEDWDEDEPYEIEDVEAHKPD 444
              P      +        W  +            +    E++  +     +  E  +  
Sbjct: 197 SGDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEK-QMK 255

Query: 445 GWLSDEPK 452
               +E +
Sbjct: 256 DKQDEEQR 263

>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Length = 101

 Score = 71.8 bits (176), Expect = 1e-15
 Identities = 26/60 (43%), Positives = 34/60 (56%)

Query: 47  PQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMIPNPEYYHDAE 106
           P  + P   D    G W  P+I+NP++KG+W P  I+NP+Y G W    I NPEY  DA 
Sbjct: 41  PDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEYSPDAN 100

>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Length = 101

 Score = 71.1 bits (174), Expect = 2e-15
 Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 397 KEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPD 456
           K+I D +  KP  WDER KI DP  +KPEDW  D+P  I D +A KP+ W  +       
Sbjct: 2   KKIKDPDAAKPEDWDERAKIDDPTDSKPEDW--DKPEHIPDPDAKKPEDWDEEMDGEWEP 59

Query: 457 PSAVKPA 463
           P    P 
Sbjct: 60  PVIQNPE 66

>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Length = 101

 Score = 66.1 bits (161), Expect = 1e-13
 Identities = 27/52 (51%), Positives = 34/52 (65%), Gaps = 4/52 (7%)

Query: 414 EKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSAVKPADW 465
           +KI DP+  KPEDWDE    +I+D    KP+ W  D+P+ IPDP A KP DW
Sbjct: 2   KKIKDPDAAKPEDWDERA--KIDDPTDSKPEDW--DKPEHIPDPDAKKPEDW 49

>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Length = 101

 Score = 59.1 bits (143), Expect = 3e-11
 Identities = 25/62 (40%), Positives = 33/62 (53%)

Query: 396 PKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIP 455
             +I D  D KP  WD+ E IPDP+  KPEDWDE+   E E      P+     +P+ I 
Sbjct: 18  RAKIDDPTDSKPEDWDKPEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQID 77

Query: 456 DP 457
           +P
Sbjct: 78  NP 79

>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Length = 38

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 14/21 (66%), Positives = 15/21 (71%)

Query: 445 GWLSDEPKLIPDPSAVKPADW 465
           G   DEPK IPDP+A KP DW
Sbjct: 1   GSHMDEPKFIPDPNAEKPDDW 21

>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Length = 38

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 16/49 (32%)

Query: 411 DEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDG-WLSDEPKLIPDPS 458
           DE + IPDP   KP+DW+ED             DG W   E   I +P+
Sbjct: 5   DEPKFIPDPNAEKPDDWNEDM------------DGEW---EAPRISNPA 38

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	465
1jhn_A	424	Calnexin; jelly-roll, beta sandwich, chaperone; 2.	100.0
3rg0_A	332	Calreticulin; beta-sandwich, chaperone, monoglucos	100.0
3pow_A	265	Calreticulin; legume lectin fold, CNX/CRT family,	100.0
1jhn_A	424	Calnexin; jelly-roll, beta sandwich, chaperone; 2.	100.0
3rg0_A	332	Calreticulin; beta-sandwich, chaperone, monoglucos	99.97
1hhn_A	101	Calreticulin; molecular chaperone; NMR {Rattus nor	99.87
1hhn_A	101	Calreticulin; molecular chaperone; NMR {Rattus nor	99.78
3pow_A	265	Calreticulin; legume lectin fold, CNX/CRT family,	99.08
3ici_C	38	Calnexin, PP90; protein-protein complex, endoplasm	98.68
3ici_C	38	Calnexin, PP90; protein-protein complex, endoplasm	97.8

>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1

Probab=100.00  E-value=1.7e-96  Score=755.34  Aligned_cols=243  Identities=53%  Similarity=1.043  Sum_probs=228.9

Q ss_pred             CccceEEeccCCCCCCCCCcceeeCCccchhhhhccCCCccccCCCceEEEEEEEeecccccccceEEEccCCCCcCCcc
Q psy7421         220 DWLGQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLT  299 (465)
Q Consensus       220 ky~GkW~~~~~~~~~~~~DkGLv~~~~ak~yaISa~l~kPf~~~~k~LVvQYeVk~q~~idCGGaYIKLl~~~~~~~d~~  299 (465)
                      +|.|+|+++++++++.++|+||||+++|||||||++|++||+|++|+||||||||||++|+|||||||||+.+ .+++++
T Consensus        56 ~y~G~w~~~~~~~~~~~~DkGL~~~~~ar~yaISa~~~kpf~~~~k~LVvQYeVk~q~~idCGGaYiKLl~~~-~~~d~~  134 (424)
T 1jhn_A           56 KYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKT-PELNLD  134 (424)
T ss_dssp             --CCEEECCBCTTCSSTTCBCCEEECSSCCCEEEEEEEEEECSSSSCEEEEEEECCTTCCSEEECCEEEEBCC-SSCCGG
T ss_pred             cCCeEEEEecCccCCCccccceeeccchhHHHHHHhhcCccccCCCCEEEEEEEEecccccccceEEEeecCc-ccCCHh
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999975 568999


Q ss_pred             cCCCCCCceEeeccCCcCCCCeEEEEEeecCCCCCcccccccccCCCCc-cccCCCCceeEEEEEecCCeEEEEEccEEE
Q psy7421         300 AFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHKAIKPSV-NLYSNESPHLYTLVLYPDNKYAVYIDNELN  378 (465)
Q Consensus       300 ~f~~~TpY~IMFGPD~CG~~~kvHfI~~~knp~~~~~eek~~~~~~~~l-~~~~D~~tHLYTLIi~pdnTyeI~IDg~~v  378 (465)
                      +|+++|||+||||||+||.++||||||||+||+||+++|||++++..++ +|++|++||||||||||||||||+|||++|
T Consensus       135 ~f~~~TpY~IMFGPD~CG~~~kvH~I~~~knp~~g~~~ekh~~~~~~~~~~~~~D~~tHlYTLIl~pdntyei~ID~~~v  214 (424)
T 1jhn_A          135 QFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIV  214 (424)
T ss_dssp             GCCSSCCEEEEEEEEEESSCCEEEEEEEEECTTTCCEEEECCCCCSSCCTHHHHSCSCEEEEEEEETTTEEEEEETTEEE
T ss_pred             HcCCCCCceEeccCCccCCCCeEEEEEecCCCCCCchhhhcccCCcccccccccCCCceEEEEEEcCCCcEEEEECCcee
Confidence            9999999999999999999999999999999999999999999887766 688999999999999999999999999999


Q ss_pred             EeeccccCCCCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCC
Q psy7421         379 IEGHLLDEGTFNPPINPPKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPS  458 (465)
Q Consensus       379 ~~GsL~~d~~f~P~~~pPk~I~DP~d~KP~DWdD~~~I~DP~~~KPeDWDE~~P~~IpDp~a~KP~dW~d~ep~~IpdP~  458 (465)
                      .+|||++|  |+|||+||++|+||+|+||+|||||++|+||+|+||+||||++|++|+||+|+||+||+|+||+||+||+
T Consensus       215 ~~GsL~~D--~~Pp~~pp~~I~Dp~~~KP~DWde~~~I~Dp~a~KPeDWde~~p~~I~Dp~A~KPedWdd~ep~~I~DP~  292 (424)
T 1jhn_A          215 NSGNLLND--MTPPVNPSREIEDPEDQKPEDWDERPKIPDPDAVKPDDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPD  292 (424)
T ss_dssp             EEEC---------CCSSCCCCBCTTCCCCTTCCCCSEEECSSCCCCTTCCSSCCSEEECTTCCCCSSCBSSSCSCCBCTT
T ss_pred             cccccHHh--ccccCCCcccccCccccCccccccccccCCcccCCccccccCCccccCCccccCCCCccccccccCCCcc
Confidence            99999999  9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy7421         459 AVKPADW  465 (465)
Q Consensus       459 ~~kP~dW  465 (465)
                      ++||+||
T Consensus       293 a~KPedW  299 (424)
T 1jhn_A          293 AEKPEDW  299 (424)
T ss_dssp             CCCCTTC
T ss_pred             cCCcccc
Confidence            9999999

>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus}

Probab=100.00  E-value=8.2e-80  Score=615.60  Aligned_cols=223  Identities=36%  Similarity=0.627  Sum_probs=179.9

Q ss_pred             CCCCCccceEEeccCCCCCC-CCCcceeeCCccchhhhhccCCCccccCCCceEEEEEEEeecccccccceEEEccCCCC
Q psy7421         216 GASKDWLGQWSIEPLKLHPL-VGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPA  294 (465)
Q Consensus       216 gksKky~GkW~~~~~~~~~~-~~DkGLv~~~~ak~yaISa~l~kPf~~~~k~LVvQYeVk~q~~idCGGaYIKLl~~~~~  294 (465)
                      |+.++..|+|++++|++++. ++|+||||+++|||||||++| +||+|++|+||||||||||++|+|||||||||++.  
T Consensus        26 S~~~~~~G~w~~~~g~~~~~~~~DkGL~t~~~ak~yAISakf-~pf~n~~k~LVvQYeVK~e~~idCGGaYiKLl~~~--  102 (332)
T 3rg0_A           26 SKHKSDFGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKF-EPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPSG--  102 (332)
T ss_dssp             CCSSSSCCCEEEECCSSCSSTTTTCEEEECSSSEEEEEEEEE-EEECCTTSCEEEEEEEEETTCCSEEECCEEEECSS--
T ss_pred             CCCcccCCeEEeecCcccCCcccccceeecchhhhhhhhccc-CCccCCCCCEEEEEEEEcccccccCceEEEeecCc--
Confidence            33456679999999999866 679999999999999999999 89999999999999999999999999999999864  


Q ss_pred             cCCcccCCCCCCceEeeccCCcCC-CCeEEEEEeecCCCCCcccccccccCCCCccccCCCCceeEEEEEecCCeEEEEE
Q psy7421         295 LQDLTAFNDKTPYTIMFGPDKCGT-DDKVHFIIRHRNPLNGSITEKHHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYI  373 (465)
Q Consensus       295 ~~d~~~f~~~TpY~IMFGPD~CG~-~~kvHfI~~~knp~~~~~eek~~~~~~~~l~~~~D~~tHLYTLIi~pdnTyeI~I  373 (465)
                       +|+++|+++|||+||||||+||+ ++||||||||+|+       +|+.+.  +++|++|++||||||||||||||||+|
T Consensus       103 -~d~~~f~~~TpY~IMFGPD~CG~~~~kvH~I~~~k~~-------~h~~kk--~i~~~~D~~THLYTLIi~pdntyeI~I  172 (332)
T 3rg0_A          103 -LDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGK-------NVLINK--DIRSKDDEFTHLYTLIVRPDNTYEVKI  172 (332)
T ss_dssp             -CCGGGCCTTSCCSEEEEEEEETTTEEEEEEEEEETTE-------EEECSS--CCBCCCSSSEEEEEEEECTTSEEEEEE
T ss_pred             -CCHhhcCCCCcceEEecCcccCCCCCEEEEEEEeCCc-------cccccC--CCCCCCCCCCceEEEEEcCCCeEEEEE
Confidence             89999999999999999999998 6899999999985       355433  467999999999999999999999999


Q ss_pred             ccEEEEeeccccCCCCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCC------CCCccCCCCCCCCCCCC
Q psy7421         374 DNELNIEGHLLDEGTFNPPINPPKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDED------EPYEIEDVEAHKPDGWL  447 (465)
Q Consensus       374 Dg~~v~~GsL~~d~~f~P~~~pPk~I~DP~d~KP~DWdD~~~I~DP~~~KPeDWDE~------~P~~IpDp~a~KP~dW~  447 (465)
                      ||++|.+|||++||+    ++||++|+||+|+||+|||||++|+||+|+||+|||+.      .|++|.+|+-+  -.| 
T Consensus       173 D~~~v~~GsL~~Dwd----~~ppk~I~Dp~d~KPedWdd~~~I~DP~a~KPeDWd~p~YkG~Wkp~~I~NP~Yk--G~W-  245 (332)
T 3rg0_A          173 DNSQVESGSLEDDWD----FLPPKKIKDPDAAKPEDWDERAKIDDPTDSKPEDWDKGGSGGEWKPRQIDNPDYK--GTW-  245 (332)
T ss_dssp             TTEEEEEEEHHHHSC----CSCCSEEECTTCCCCTTCCCCCCCC----------------------------CC--CCC-
T ss_pred             CCEEEecccccCCCC----cCCccccCCcccCCcccCcCcccCCCcccCCccccccccccccccccccCCCccc--CCc-
Confidence            999999999999976    58999999999999999999999999999999999953      24556555433  123 


Q ss_pred             CCCCCCCCCCCCC
Q psy7421         448 SDEPKLIPDPSAV  460 (465)
Q Consensus       448 d~ep~~IpdP~~~  460 (465)
                        .|++|+||+|.
T Consensus       246 --~p~~I~NP~Y~  256 (332)
T 3rg0_A          246 --IHPEIDNPEYS  256 (332)
T ss_dssp             --CCCEEECTTCC
T ss_pred             --cCCccCCCCCc
Confidence              36667777665

>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A*

Probab=100.00  E-value=1.7e-64  Score=494.49  Aligned_cols=164  Identities=34%  Similarity=0.560  Sum_probs=148.2

Q ss_pred             CCCCCccceEEeccCCCCCC-CCCcceeeCCccchhhhhccCCCccccCCCceEEEEEEEeecccccccceEEEccCCCC
Q psy7421         216 GASKDWLGQWSIEPLKLHPL-VGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPA  294 (465)
Q Consensus       216 gksKky~GkW~~~~~~~~~~-~~DkGLv~~~~ak~yaISa~l~kPf~~~~k~LVvQYeVk~q~~idCGGaYIKLl~~~~~  294 (465)
                      |+.+++.|+|+++++++++. ++|+||||+++|||||||++| +||++++|+||||||||||++|+|||||||||+..  
T Consensus        31 S~~kk~~G~w~~~~g~~~~~~~~DkGL~t~~~Ak~yaISakl-~pf~~~~k~LVvQYeVk~q~~idCGGaYiKLl~~~--  107 (265)
T 3pow_A           31 SKHKSDFGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASF-EPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPNS--  107 (265)
T ss_dssp             CCSSSCCCCEEEECCSSCSCTTTTCEEEECSSSEEEEEEEEE-EEECCTTSCEEEEEEEECTTCCSEEECCEEEECTT--
T ss_pred             CCCcCcCCeEEeecccccCCcccccceeecchhhhhhhhccc-CCccCCCCCEEEEEEEEeccccccCceEEEeecCC--
Confidence            34456789999999999866 679999999999999999999 99999999999999999999999999999999864  


Q ss_pred             cCCcccCCCCCCceEeeccCCcCC-CCeEEEEEeecCCCCCcccccccccCCCCccccCCCCceeEEEEEecCCeEEEEE
Q psy7421         295 LQDLTAFNDKTPYTIMFGPDKCGT-DDKVHFIIRHRNPLNGSITEKHHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYI  373 (465)
Q Consensus       295 ~~d~~~f~~~TpY~IMFGPD~CG~-~~kvHfI~~~knp~~~~~eek~~~~~~~~l~~~~D~~tHLYTLIi~pdnTyeI~I  373 (465)
                       +++++|+++|||+||||||+||+ ++||||||||+|+       +|+.+.  +++|++|++||||||||||||||||+|
T Consensus       108 -~~~~~f~~~tpY~IMFGPD~CG~~~~kvHfI~~~k~~-------~h~~~~--~~~~~~D~~tHLYTLIi~pdntyeI~I  177 (265)
T 3pow_A          108 -LDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGK-------NVLINK--DIRCKDDEFTHLYTLIVRPDNTYEVKI  177 (265)
T ss_dssp             -CCGGGCCTTSCCSEEEEEEEESTTCEEEEEEEEETTE-------EEECSS--CCBCCCSSSEEEEEEEECTTSEEEEEE
T ss_pred             -CCHhhcCCCCCceEEecCcccCCCCCEEEEEEEcCCc-------cccccC--CCCCCCCCCCceEEEEEcCCCeEEEEE
Confidence             89999999999999999999998 7899999999985       355433  357899999999999999999999999


Q ss_pred             ccEEEEeeccccCCCCCCC
Q psy7421         374 DNELNIEGHLLDEGTFNPP  392 (465)
Q Consensus       374 Dg~~v~~GsL~~d~~f~P~  392 (465)
                      ||+++.+|||++||+|.||
T Consensus       178 D~~~v~~GsL~~d~df~Pp  196 (265)
T 3pow_A          178 DNSQVESGSLEDDWDFLPG  196 (265)
T ss_dssp             TTEEEEEEEHHHHSCC---
T ss_pred             CCEEeeeccccCccccCCC
Confidence            9999999999999887544

>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1

Probab=100.00  E-value=9.6e-44  Score=365.21  Aligned_cols=131  Identities=43%  Similarity=0.910  Sum_probs=119.2

Q ss_pred             hhcccccC--cCCCCCCCCCccCCCCCCCcccCCCCCCCCCCCccCCCCCCcCCCCCccCCCCCCCCCcCCcCCCCCCCC
Q psy7421          26 TFKQKLSK--RTNDKEMDGEWEAPQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMIPNPEYYH  103 (465)
Q Consensus        26 ~~~~~~~~--~~wd~e~dGeWe~p~i~NP~c~~~~gcG~W~~P~I~NP~YKG~W~pp~I~NP~YkG~W~prkI~NP~y~e  103 (465)
                      +..+|.+.  .+||++++|+|+||+|+||+|++++|||+|++|||.||+|||+|+||||+||+|+|+|+||+|+||+||+
T Consensus       287 ~I~DP~a~KPedWd~~~~G~W~~P~i~NP~~~~~~gcG~W~~P~I~NP~ykG~W~pp~I~NP~Ykg~W~p~~I~NP~y~~  366 (424)
T 1jhn_A          287 YVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFE  366 (424)
T ss_dssp             CCBCTTCCCCTTCCTTTSCCCCCCBCCCGGGTTSSCBSSCCCCEEECTTCCCSCCCCEEECTTCCCSCCCCBCCCTTCCC
T ss_pred             cCCCcccCCccccccCCCccccCcccCCchhcccccCCcccCCCCCCccccCcccCCccCCCcccccccccccCCccccC
Confidence            34455555  3799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccCCceeeeeeeeeehhhhhhcccCccceeeccccceeeeeEEecCCHHHHHHHHHHHhHhhhhcc
Q psy7421         104 DAEPFKLFPIVSTLQEQVEKKNRIFSRYLSPKIQKYINYQNVYFDNIIITESLDEAKQFAEATFKQKLSKR  174 (465)
Q Consensus       104 d~~p~~~~~i~~~g~e~v~~~~~i~~~~~~~~ie~w~~~~~~~FDNilItdd~~~A~~~~~~t~~~k~~~~  174 (465)
                      |.+||+|.+|+||||                  |||||++|++|||||||+|+++|+++|++||+.|+..+
T Consensus       367 d~~p~~~~~i~~iG~------------------ElW~~~~g~~FDNilItdd~~~A~~~~~~t~~~k~~~e  419 (424)
T 1jhn_A          367 DLEPFKMTPFSAIGL------------------ELWSMTSDIFFDNFIVCGDRRVVDDWANDGWGLKKAAD  419 (424)
T ss_dssp             CCCTTCCCCEEEEEE------------------CCCCSSSCCBCEEEEEESSSHHHHHHHHHTTTC-----
T ss_pred             CCcccccCcccEEEE------------------EeEEeeCCcEEeeEEEcCCHHHHHHHHHhhhhhhhhhh
Confidence            999999999999985                  68999999999999999999999999999999887544

>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus}

Probab=99.97  E-value=9.5e-32  Score=269.25  Aligned_cols=137  Identities=26%  Similarity=0.394  Sum_probs=85.1

Q ss_pred             cceeeeee-ecchHHHHHHH-HHhhcccccC--cCCCCCCCCCccCCCCCCCcccCCCCCCCCCCCccCCCCCCcCCCCC
Q psy7421           5 VYFDNIII-TESLDEAKQFA-EATFKQKLSK--RTNDKEMDGEWEAPQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPP   80 (465)
Q Consensus         5 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~--~~wd~e~dGeWe~p~i~NP~c~~~~gcG~W~~P~I~NP~YKG~W~pp   80 (465)
                      |..||-.+ .-||.+--.+. .....||.++  .+||+.+  ....|....|.+++             ||+|||+|+||
T Consensus       170 I~ID~~~v~~GsL~~Dwd~~ppk~I~Dp~d~KPedWdd~~--~I~DP~a~KPeDWd-------------~p~YkG~Wkp~  234 (332)
T 3rg0_A          170 VKIDNSQVESGSLEDDWDFLPPKKIKDPDAAKPEDWDERA--KIDDPTDSKPEDWD-------------KGGSGGEWKPR  234 (332)
T ss_dssp             EEETTEEEEEEEHHHHSCCSCCSEEECTTCCCCTTCCCCC--CCC-----------------------------------
T ss_pred             EEECCEEEecccccCCCCcCCccccCCcccCCcccCcCcc--cCCCcccCCccccc-------------ccccccccccc
Confidence            44555333 34555432221 1344666664  5787643  33445555555443             68899999999


Q ss_pred             ccCCCCCCCCCcCCcCCCCCCCCCCCCCccCCceeeeeeeeeehhhhhhcccCccceeeccccceeeeeEEecCCHHHHH
Q psy7421          81 MINNPNYNGKWAPRMIPNPEYYHDAEPFKLFPIVSTLQEQVEKKNRIFSRYLSPKIQKYINYQNVYFDNIIITESLDEAK  160 (465)
Q Consensus        81 ~I~NP~YkG~W~prkI~NP~y~ed~~p~~~~~i~~~g~e~v~~~~~i~~~~~~~~ie~w~~~~~~~FDNilItdd~~~A~  160 (465)
                      ||+||||||+|+||+|+||+||+|.+||+|.+|+|||+                  |||||++|++|||||||+|+++|+
T Consensus       235 ~I~NP~YkG~W~p~~I~NP~Y~~D~~~~~~~~i~~iG~------------------ElWq~~sg~iFDNilItdd~~~A~  296 (332)
T 3rg0_A          235 QIDNPDYKGTWIHPEIDNPEYSPDANIYAYDSFAVLGL------------------DLWQVKSGTIFDNFLITNDEAYAE  296 (332)
T ss_dssp             ------CCCCCCCCEEECTTCCCCTTTTCCSCEEEEEE------------------EEEESSCCEEEEEEEEESCHHHHH
T ss_pred             ccCCCcccCCccCCccCCCCCcCCcchhccccccEEEE------------------EEEeccCCcEEeeEEEcCCHHHHH
Confidence            99999999999999999999999999999999999985                  689999999999999999999999


Q ss_pred             HHHHHHhHhhhhcc
Q psy7421         161 QFAEATFKQKLSKR  174 (465)
Q Consensus       161 ~~~~~t~~~k~~~~  174 (465)
                      ++|++||++|+..+
T Consensus       297 ~~~~~t~~~~~~~E  310 (332)
T 3rg0_A          297 EFGNETWGVTKAAE  310 (332)
T ss_dssp             HHHHTTHHHHHHHH
T ss_pred             HHHHHhhhhhhHHH
Confidence            99999999887643

>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A

Probab=99.87  E-value=1.5e-23  Score=179.47  Aligned_cols=62  Identities=42%  Similarity=0.868  Sum_probs=56.0

Q ss_pred             CCCCCCCccc-----CCCCCCCCCCCccCCCCCCcCCCCCccCCCCCCCCCcCCcCCCCCCCCCCCC
Q psy7421          46 APQIENPLCV-----DAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMIPNPEYYHDAEP  107 (465)
Q Consensus        46 ~p~i~NP~c~-----~~~gcG~W~~P~I~NP~YKG~W~pp~I~NP~YkG~W~prkI~NP~y~ed~~p  107 (465)
                      +.+|+||.|.     +..+||+|++|||.||+|||+|+++||+||+|+|+|+||+|+||+||+|.++
T Consensus        35 ~~~I~dP~~~kP~dWd~~~~G~W~~p~I~NP~ykG~W~pp~I~NP~Ykg~W~p~~I~NP~y~~d~~~  101 (101)
T 1hhn_A           35 PEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEYSPDANI  101 (101)
T ss_dssp             CSEEECTTCCCCTTCCHHHHSSCCCCEEECTTCCSSCCCCCEECSSCCCCCCCCCBCCTTCCSSSCC
T ss_pred             cccCCCcccCCccccCcccCCcccCCcCCCccCcCcccCCccCCCCCCCCccCCccCCCCccCCCCC
Confidence            4577777765     6678999999999999999999999999999999999999999999999753

>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A

Probab=99.78  E-value=5.2e-20  Score=157.59  Aligned_cols=63  Identities=48%  Similarity=0.912  Sum_probs=57.7

Q ss_pred             CCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCC-----CCCCCCCCCCC
Q psy7421         396 PKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSD-----EPKLIPDPSAV  460 (465)
Q Consensus       396 Pk~I~DP~d~KP~DWdD~~~I~DP~~~KPeDWDE~~P~~IpDp~a~KP~dW~d~-----ep~~IpdP~~~  460 (465)
                      |++|+||+++||+|||++++|+||+|+||+||||  +++|+||+|+||++|+++     +++||+||+|+
T Consensus         1 p~~I~Dp~~~KPeDWd~~~~I~DP~a~KPeDWde--~~~I~dP~~~kP~dWd~~~~G~W~~p~I~NP~yk   68 (101)
T 1hhn_A            1 SKKIKDPDAAKPEDWDERAKIDDPTDSKPEDWDK--PEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYK   68 (101)
T ss_dssp             CCSBCCSTTCCCSCCSTTSEECCSSCCCCSTTCC--CSEEECTTCCCCTTCCHHHHSSCCCCEEECTTCC
T ss_pred             CcccCCcccCCccccccccccCCcccCCccCccc--cccCCCcccCCccccCcccCCcccCCcCCCccCc
Confidence            6899999999999999999999999999999996  789999999999999986     37777777775

>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A*

Probab=99.08  E-value=6.8e-11  Score=116.21  Aligned_cols=55  Identities=16%  Similarity=0.137  Sum_probs=45.7

Q ss_pred             CCCCCCCccCCceeeeeeeeeehhhhhhcccCccceeeccccceeeeeEEecCCHHHHHHHHHHHhHhhhhcc
Q psy7421         102 YHDAEPFKLFPIVSTLQEQVEKKNRIFSRYLSPKIQKYINYQNVYFDNIIITESLDEAKQFAEATFKQKLSKR  174 (465)
Q Consensus       102 ~ed~~p~~~~~i~~~g~e~v~~~~~i~~~~~~~~ie~w~~~~~~~FDNilItdd~~~A~~~~~~t~~~k~~~~  174 (465)
                      .+|.++|++.+|+++|+                  |||||++|+||||||||||+++|+++|++||++++..+
T Consensus       197 ~~d~~ly~~~~i~~vGl------------------dlWQvksGtiFDNiLITDd~~~A~~~~eetw~~~k~~E  251 (265)
T 3pow_A          197 SGDPSIYAYDNFGVLGL------------------DLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAE  251 (265)
T ss_dssp             ----CTTCCSCEEEEEE------------------EEEESSCCCEEEEEEEESCHHHHHHHHHHTHHHHHHHH
T ss_pred             CCCccccccccccEEEE------------------EEEEecCCeEeccEEecCCHHHHHHHHHHHHHhhhHHH
Confidence            45667788889988875                  68999999999999999999999999999999876543

>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris}

Probab=98.68  E-value=8.1e-09  Score=73.97  Aligned_cols=29  Identities=48%  Similarity=0.783  Sum_probs=26.1

Q ss_pred             CCCCccCCCCCCCCCCCCCC-----CCCCCCCCC
Q psy7421         430 DEPYEIEDVEAHKPDGWLSD-----EPKLIPDPS  458 (465)
Q Consensus       430 ~~P~~IpDp~a~KP~dW~d~-----ep~~IpdP~  458 (465)
                      ++|++|+||+|+||+||+++     ++|||+||.
T Consensus         5 dep~~IpDP~a~KP~DWdde~DGeWe~P~I~NPk   38 (38)
T 3ici_C            5 DEPKFIPDPNAEKPDDWNEDMDGEWEAPRISNPA   38 (38)
T ss_pred             cccccccCCCCCCCCCcCcCcCCcccCCcCCCcC
Confidence            47999999999999999987     499999995

>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris}

Probab=97.80  E-value=1.3e-05  Score=57.53  Aligned_cols=19  Identities=58%  Similarity=1.146  Sum_probs=11.5

Q ss_pred             CCCCCCCCCccCCCCCCCc
Q psy7421          35 TNDKEMDGEWEAPQIENPL   53 (465)
Q Consensus        35 ~wd~e~dGeWe~p~i~NP~   53 (465)
                      +||+|+||+|+||+|+||+
T Consensus        20 DWdde~DGeWe~P~I~NPk   38 (38)
T 3ici_C           20 DWNEDMDGEWEAPRISNPA   38 (38)
T ss_pred             CcCcCcCCcccCCcCCCcC
Confidence            4666666666666666653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	465
d1jhna4	249	b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Cani	3e-71
d1jhna3	142	b.104.1.1 (A:270-411) Calnexin {Dog (Canis familia	5e-29
d1jhna3	142	b.104.1.1 (A:270-411) Calnexin {Dog (Canis familia	4e-28
d1jhna3	142	b.104.1.1 (A:270-411) Calnexin {Dog (Canis familia	5e-08
d1k9ca_	74	b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicu	6e-16
d1k9ca_	74	b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicu	4e-15
d1k9ca_	74	b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicu	3e-05
d1k9ca_	74	b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicu	0.001
d1k91a_	37	b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicu	6e-04
d1k91a_	37	b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicu	0.003
d1k91a_	37	b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicu	0.004

>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 249

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Calnexin/calreticulin
domain: Calnexin
species: Dog (Canis familiaris) [TaxId: 9615]

 Score =  224 bits (571), Expect = 3e-71
 Identities = 91/211 (43%), Positives = 126/211 (59%), Gaps = 11/211 (5%)

Query: 223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
           G+W ++ +K   L GD GLV  S+AKHHAISA L+KPF+F+  P ++QYEV FQ+  +CG
Sbjct: 43  GKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECG 102

Query: 283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
           GAY+KLL++ P L +L  F+DKTPYTIMFGPDKCG D K+HFI RH+NP  G   EKH  
Sbjct: 103 GAYVKLLSKTPEL-NLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKH-- 159

Query: 343 AIKPSVNL---YSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
           A +P  +L   ++++  HLYTL+L PDN + + +D  +   G+L         + P   I
Sbjct: 160 AKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLEP-----FKMTPFSAI 214

Query: 400 VDVNDKKPATWDEREKIPDPEVTKPEDWDED 430
                   +       I   +    +DW  D
Sbjct: 215 GLELWSMTSDIFFDNFIVCGDRRVVDDWAND 245

>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 142

class: All beta proteins
fold: P-domain of calnexin/calreticulin
superfamily: P-domain of calnexin/calreticulin
family: P-domain of calnexin/calreticulin
domain: Calnexin
species: Dog (Canis familiaris) [TaxId: 9615]

 Score =  108 bits (272), Expect = 5e-29
 Identities = 46/74 (62%), Positives = 55/74 (74%)

Query: 392 PINPPKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEP 451
           P+NP +EI D  D+KP  WDER KIPDP+  KP+DW+ED P +I D EA KPDGWL DEP
Sbjct: 1   PVNPSREIEDPEDQKPEDWDERPKIPDPDAVKPDDWNEDAPAKIPDEEATKPDGWLDDEP 60

Query: 452 KLIPDPSAVKPADW 465
           + +PDP A KP DW
Sbjct: 61  EYVPDPDAEKPEDW 74

>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 142

class: All beta proteins
fold: P-domain of calnexin/calreticulin
superfamily: P-domain of calnexin/calreticulin
family: P-domain of calnexin/calreticulin
domain: Calnexin
species: Dog (Canis familiaris) [TaxId: 9615]

 Score =  106 bits (266), Expect = 4e-28
 Identities = 45/68 (66%), Positives = 53/68 (77%)

Query: 37  DKEMDGEWEAPQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMI 96
           D++MDGEWEAPQI NP C  APGCG W  P+I NP +KGKW PPMI+NPNY G W PR I
Sbjct: 75  DEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKI 134

Query: 97  PNPEYYHD 104
           PNP+++ D
Sbjct: 135 PNPDFFED 142

>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 142

class: All beta proteins
fold: P-domain of calnexin/calreticulin
superfamily: P-domain of calnexin/calreticulin
family: P-domain of calnexin/calreticulin
domain: Calnexin
species: Dog (Canis familiaris) [TaxId: 9615]

 Score = 49.5 bits (118), Expect = 5e-08
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 7/71 (9%)

Query: 394 NPPKEIVDVNDKKPATW--DEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSD-- 449
           + P +I D    KP  W  DE E +PDP+  KPEDWDED   E E  +   P    +   
Sbjct: 39  DAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGC 98

Query: 450 ---EPKLIPDP 457
              +  +I +P
Sbjct: 99  GVWQRPMIDNP 109

>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 74

class: All beta proteins
fold: P-domain of calnexin/calreticulin
superfamily: P-domain of calnexin/calreticulin
family: P-domain of calnexin/calreticulin
domain: Calreticulin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.1 bits (172), Expect = 6e-16
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 7/66 (10%)

Query: 397 KEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSD-----EP 451
           K+I D +  KP  WDER KI DP  +KPEDW  D+P  I D +A KP+ W  +     EP
Sbjct: 2   KKIKDPDAAKPEDWDERAKIDDPTDSKPEDW--DKPEHIPDPDAKKPEDWDEEMDGEWEP 59

Query: 452 KLIPDP 457
            +I +P
Sbjct: 60  PVIQNP 65

>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 74

class: All beta proteins
fold: P-domain of calnexin/calreticulin
superfamily: P-domain of calnexin/calreticulin
family: P-domain of calnexin/calreticulin
domain: Calreticulin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.8 bits (166), Expect = 4e-15
 Identities = 27/51 (52%), Positives = 33/51 (64%), Gaps = 4/51 (7%)

Query: 415 KIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSAVKPADW 465
           KI DP+  KPEDWDE    +I+D    KP+ W  D+P+ IPDP A KP DW
Sbjct: 3   KIKDPDAAKPEDWDERA--KIDDPTDSKPEDW--DKPEHIPDPDAKKPEDW 49

>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 74

class: All beta proteins
fold: P-domain of calnexin/calreticulin
superfamily: P-domain of calnexin/calreticulin
family: P-domain of calnexin/calreticulin
domain: Calreticulin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (93), Expect = 3e-05
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 70 NPKFKGKWSPPMINNPNYNGKWAPR 94
          + +  G+W PP+I NP Y G+W PR
Sbjct: 50 DEEMDGEWEPPVIQNPEYKGEWKPR 74

>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 74

class: All beta proteins
fold: P-domain of calnexin/calreticulin
superfamily: P-domain of calnexin/calreticulin
family: P-domain of calnexin/calreticulin
domain: Calreticulin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 56 DAPGCGPWTVPLIKNPKFKGKWSP 79
          D    G W  P+I+NP++KG+W P
Sbjct: 50 DEEMDGEWEPPVIQNPEYKGEWKP 73

>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 37

class: All beta proteins
fold: P-domain of calnexin/calreticulin
superfamily: P-domain of calnexin/calreticulin
family: P-domain of calnexin/calreticulin
domain: Calreticulin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.0 bits (81), Expect = 6e-04
 Identities = 12/18 (66%), Positives = 14/18 (77%)

Query: 37 DKEMDGEWEAPQIENPLC 54
          D+EMDGEWE P I+NP  
Sbjct: 18 DEEMDGEWEPPVIQNPEY 35

>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 37

class: All beta proteins
fold: P-domain of calnexin/calreticulin
superfamily: P-domain of calnexin/calreticulin
family: P-domain of calnexin/calreticulin
domain: Calreticulin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.5 bits (77), Expect = 0.003
 Identities = 12/20 (60%), Positives = 15/20 (75%)

Query: 412 EREKIPDPEVTKPEDWDEDE 431
           + E IPDP+  KPEDWDE+ 
Sbjct: 2   KPEHIPDPDAKKPEDWDEEM 21

>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 37

class: All beta proteins
fold: P-domain of calnexin/calreticulin
superfamily: P-domain of calnexin/calreticulin
family: P-domain of calnexin/calreticulin
domain: Calreticulin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 32.7 bits (75), Expect = 0.004
 Identities = 10/16 (62%), Positives = 12/16 (75%)

Query: 450 EPKLIPDPSAVKPADW 465
           +P+ IPDP A KP DW
Sbjct: 2   KPEHIPDPDAKKPEDW 17

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	465
d1jhna4	249	Calnexin {Dog (Canis familiaris) [TaxId: 9615]}	100.0
d1jhna3	142	Calnexin {Dog (Canis familiaris) [TaxId: 9615]}	99.98
d1jhna3	142	Calnexin {Dog (Canis familiaris) [TaxId: 9615]}	99.94
d1k9ca_	74	Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011	99.87
d1k9ca_	74	Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011	99.59
d1k91a_	37	Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011	98.75
d1k91a_	37	Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011	98.5
d1jhna4	249	Calnexin {Dog (Canis familiaris) [TaxId: 9615]}	97.61

>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Calnexin/calreticulin
domain: Calnexin
species: Dog (Canis familiaris) [TaxId: 9615]

Probab=100.00  E-value=1.7e-80  Score=602.55  Aligned_cols=206  Identities=42%  Similarity=0.731  Sum_probs=194.7

Q ss_pred             CccceEEeccCCCCCCCCCcceeeCCccchhhhhccCCCccccCCCceEEEEEEEeecccccccceEEEccCCCCcCCcc
Q psy7421         220 DWLGQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLT  299 (465)
Q Consensus       220 ky~GkW~~~~~~~~~~~~DkGLv~~~~ak~yaISa~l~kPf~~~~k~LVvQYeVk~q~~idCGGaYIKLl~~~~~~~d~~  299 (465)
                      +|.|+|.+++++..++++|+||||+++|||||||++|++||++++|+||||||||+|++++|||||||||+.+ .+++++
T Consensus        40 ~y~G~W~~~~~~~~~~~~DkGL~~~~~ak~yaIs~~l~~pf~~~~k~LVvQYeVk~q~~~~CGGaYiKLl~~~-~~~~~~  118 (249)
T d1jhna4          40 KYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKT-PELNLD  118 (249)
T ss_dssp             --CCEEECCBCTTCSSTTCBCCEEECSSCCCEEEEEEEEEECSSSSCEEEEEEECCTTCCSEEECCEEEEBCC-SSCCGG
T ss_pred             eccceeeeecccccCCCCcccceecccchhhhhhccCCCCcccCCCCEEEEEEeeeccCccccceEEEeecCc-ccCCHh
Confidence            6899999999998999999999999999999999999999999999999999999999999999999999986 568999


Q ss_pred             cCCCCCCceEeeccCCcCCCCeEEEEEeecCCCCCcccccccccCCCCc-cccCCCCceeEEEEEecCCeEEEEEccEEE
Q psy7421         300 AFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHKAIKPSV-NLYSNESPHLYTLVLYPDNKYAVYIDNELN  378 (465)
Q Consensus       300 ~f~~~TpY~IMFGPD~CG~~~kvHfI~~~knp~~~~~eek~~~~~~~~l-~~~~D~~tHLYTLIi~pdnTyeI~IDg~~v  378 (465)
                      +|+++|||+||||||+||.++||||||||+||++++++|+|++.|..++ ++++|++||||||||||||||||+|||+++
T Consensus       119 ~f~~~TpY~IMFGPD~CG~~~kvHfIf~~~np~~~~~eek~~~~p~~~~~~~~~D~~tHLYTLIi~pdntfeI~iDg~~~  198 (249)
T d1jhna4         119 QFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIV  198 (249)
T ss_dssp             GCCSSCCEEEEEEEEEESSCCEEEEEEEEECTTTCCEEEECCCCCSSCCTHHHHSCSCEEEEEEEETTTEEEEEETTEEE
T ss_pred             HcCCCCCceEEeCCcccCCCCEEEEEEEcCCCCCccceeeeecCCCccccccCcCCCcccceEEECCCCeEEEEeCCccc
Confidence            9999999999999999999999999999999999999999999987666 678999999999999999999999999999


Q ss_pred             EeeccccCCCCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q psy7421         379 IEGHLLDEGTFNPPINPPKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDE  431 (465)
Q Consensus       379 ~~GsL~~d~~f~P~~~pPk~I~DP~d~KP~DWdD~~~I~DP~~~KPeDWDE~~  431 (465)
                      .+|||++.  +   ++||++|+||.++||+|||||++|+||+|+||+||||++
T Consensus       199 ~~G~le~~--~---~~p~~~i~dp~~~KP~DW~d~~~I~dp~~~kpedWdedt  246 (249)
T d1jhna4         199 NSGNLEPF--K---MTPFSAIGLELWSMTSDIFFDNFIVCGDRRVVDDWANDG  246 (249)
T ss_dssp             EEECCCTT--C---CCCEEEEEECCCCSSSCCBCEEEEEESSSHHHHHHHHHT
T ss_pred             cCCCcCcc--c---CCCcccCCCcccCCCCCccccccccCCCcCChhhhhhhc
Confidence            99999753  3   678999999999999999999999999999999999853

>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]}

class: All beta proteins
fold: P-domain of calnexin/calreticulin
superfamily: P-domain of calnexin/calreticulin
family: P-domain of calnexin/calreticulin
domain: Calnexin
species: Dog (Canis familiaris) [TaxId: 9615]

Probab=99.98  E-value=7.1e-34  Score=252.57  Aligned_cols=77  Identities=58%  Similarity=1.300  Sum_probs=72.3

Q ss_pred             cccccC--cCCCCCCCCCccCCCCCCCcccCCCCCCCCCCCccCCCCCCcCCCCCccCCCCCCCCCcCCcCCCCCCCCC
Q psy7421          28 KQKLSK--RTNDKEMDGEWEAPQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMIPNPEYYHD  104 (465)
Q Consensus        28 ~~~~~~--~~wd~e~dGeWe~p~i~NP~c~~~~gcG~W~~P~I~NP~YKG~W~pp~I~NP~YkG~W~prkI~NP~y~ed  104 (465)
                      -|+.++  .+||+++||+|+||+|+||+|.++.|||+|++|||.||+|||+|+++||+||||||+|+||+|+||+||+|
T Consensus        64 ~DP~a~KP~dWdde~dGeWe~P~i~NP~c~~~~gCG~W~~p~i~NP~YKG~W~~p~I~NPnYkG~W~p~~IpNP~y~eD  142 (142)
T d1jhna3          64 PDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFED  142 (142)
T ss_dssp             BCTTCCCCTTCCTTTSCCCCCCBCCCGGGTTSSCBSSCCCCEEECTTCCCSCCCCEEECTTCCCSCCCCBCCCTTCCCC
T ss_pred             CCccccCCCcccccccCcccCCcCCCcccccccCccccccccccCccccccccCCcccCCCCcCCcCCCcCCCCCcCCC
Confidence            344444  47999999999999999999999999999999999999999999999999999999999999999999986

>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]}

class: All beta proteins
fold: P-domain of calnexin/calreticulin
superfamily: P-domain of calnexin/calreticulin
family: P-domain of calnexin/calreticulin
domain: Calnexin
species: Dog (Canis familiaris) [TaxId: 9615]

Probab=99.94  E-value=4.8e-28  Score=214.92  Aligned_cols=74  Identities=62%  Similarity=1.266  Sum_probs=73.2

Q ss_pred             CCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy7421         392 PINPPKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSAVKPADW  465 (465)
Q Consensus       392 ~~~pPk~I~DP~d~KP~DWdD~~~I~DP~~~KPeDWDE~~P~~IpDp~a~KP~dW~d~ep~~IpdP~~~kP~dW  465 (465)
                      ||+|||+|+||+|+||+|||||++|+||+|+||+||||++|++|+||+|+||++|+++||+||+||+|+||+||
T Consensus         1 P~~Ppk~I~Dp~d~KP~DWdd~~~I~Dp~a~KPeDWde~~p~~IpDp~a~kP~~W~~dep~~I~DP~a~KP~dW   74 (142)
T d1jhna3           1 PVNPSREIEDPEDQKPEDWDERPKIPDPDAVKPDDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDW   74 (142)
T ss_dssp             CCSSCCCCBCTTCCCCTTCCCCSEEECSSCCCCTTCCSSCCSEEECTTCCCCSSCBSSSCSCCBCTTCCCCTTC
T ss_pred             CCCCcccCCCcCcCCCccccccccCCCccccCCccccccccccCCCccccCCccccccCccccCCccccCCCcc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999

>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: P-domain of calnexin/calreticulin
superfamily: P-domain of calnexin/calreticulin
family: P-domain of calnexin/calreticulin
domain: Calreticulin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=2e-23  Score=167.06  Aligned_cols=63  Identities=48%  Similarity=0.904  Sum_probs=60.3

Q ss_pred             CcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCC-----CCCCCCCCCCCC
Q psy7421         397 KEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSD-----EPKLIPDPSAVK  461 (465)
Q Consensus       397 k~I~DP~d~KP~DWdD~~~I~DP~~~KPeDWDE~~P~~IpDp~a~KP~dW~d~-----ep~~IpdP~~~k  461 (465)
                      |+|+||+++||+|||+|++|+||+|+||+||||  |++|+||+|+||++|+++     +++||+||+|+-
T Consensus         2 k~I~DP~~~KPeDWde~~~I~Dp~a~KPedWDe--p~~I~Dp~A~KP~dWd~e~dGeWe~P~I~NP~ykG   69 (74)
T d1k9ca_           2 KKIKDPDAAKPEDWDERAKIDDPTDSKPEDWDK--PEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKG   69 (74)
T ss_dssp             CCCCCCSSCCTTSCTTTSCCSCSSTTCCTTTSC--CSEEECSSCCCCTTCCTTTTCSCCCCEEECSSCCC
T ss_pred             CccCCcCcCCCCCccccccCCCccccCCCCCCC--ccccCCCCccCCCCCCccccCCccCCcCCCcccCc
Confidence            799999999999999999999999999999984  999999999999999999     599999999983

>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: P-domain of calnexin/calreticulin
superfamily: P-domain of calnexin/calreticulin
family: P-domain of calnexin/calreticulin
domain: Calreticulin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=3.2e-16  Score=125.01  Aligned_cols=48  Identities=54%  Similarity=1.107  Sum_probs=45.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy7421         414 EKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSAVKPADW  465 (465)
Q Consensus       414 ~~I~DP~~~KPeDWDE~~P~~IpDp~a~KP~dW~d~ep~~IpdP~~~kP~dW  465 (465)
                      ++|+||+++||+||||+  ++|+||+|+||+||+  ||.||+||+|+||++|
T Consensus         2 k~I~DP~~~KPeDWde~--~~I~Dp~a~KPedWD--ep~~I~Dp~A~KP~dW   49 (74)
T d1k9ca_           2 KKIKDPDAAKPEDWDER--AKIDDPTDSKPEDWD--KPEHIPDPDAKKPEDW   49 (74)
T ss_dssp             CCCCCCSSCCTTSCTTT--SCCSCSSTTCCTTTS--CCSEEECSSCCCCTTC
T ss_pred             CccCCcCcCCCCCcccc--ccCCCccccCCCCCC--CccccCCCCccCCCCC
Confidence            58999999999999976  699999999999994  6999999999999999

>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: P-domain of calnexin/calreticulin
superfamily: P-domain of calnexin/calreticulin
family: P-domain of calnexin/calreticulin
domain: Calreticulin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.75  E-value=5.1e-10  Score=77.94  Aligned_cols=30  Identities=37%  Similarity=0.751  Sum_probs=28.0

Q ss_pred             CCCccCCCCCCCCCCCCCC-----CCCCCCCCCCC
Q psy7421         431 EPYEIEDVEAHKPDGWLSD-----EPKLIPDPSAV  460 (465)
Q Consensus       431 ~P~~IpDp~a~KP~dW~d~-----ep~~IpdP~~~  460 (465)
                      +|++|+||+|+||+|||++     |+|+|+||+++
T Consensus         2 eP~~IpDp~A~kP~dWdee~DGeWe~P~I~NP~~k   36 (37)
T d1k91a_           2 KPEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYK   36 (37)
T ss_dssp             CCSEEECSSCCSCTTCCHHHHCSCCCCEEECTTCC
T ss_pred             CccccCCCCCCCCCccccccCCCCcCCccCCCCcC
Confidence            6999999999999999988     59999999986

>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: P-domain of calnexin/calreticulin
superfamily: P-domain of calnexin/calreticulin
family: P-domain of calnexin/calreticulin
domain: Calreticulin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.50  E-value=3.9e-09  Score=73.47  Aligned_cols=27  Identities=48%  Similarity=0.770  Sum_probs=21.6

Q ss_pred             ccccC--cCCCCCCCCCccCCCCCCCccc
Q psy7421          29 QKLSK--RTNDKEMDGEWEAPQIENPLCV   55 (465)
Q Consensus        29 ~~~~~--~~wd~e~dGeWe~p~i~NP~c~   55 (465)
                      ||.++  .+||++|||+|+||+|+||+|.
T Consensus         8 Dp~A~kP~dWdee~DGeWe~P~I~NP~~k   36 (37)
T d1k91a_           8 DPDAKKPEDWDEEMDGEWEPPVIQNPEYK   36 (37)
T ss_dssp             CSSCCSCTTCCHHHHCSCCCCEEECTTCC
T ss_pred             CCCCCCCCccccccCCCCcCCccCCCCcC
Confidence            45544  4799999999999998888885

>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Calnexin/calreticulin
domain: Calnexin
species: Dog (Canis familiaris) [TaxId: 9615]

Probab=97.61  E-value=5.5e-07  Score=85.71  Aligned_cols=34  Identities=21%  Similarity=0.049  Sum_probs=31.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCC
Q psy7421         414 EKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSD  449 (465)
Q Consensus       414 ~~I~DP~~~KPeDWDE~~P~~IpDp~a~KP~dW~d~  449 (465)
                      +.|+||+++||+||+++  ++|+||+|+||+||+++
T Consensus       212 ~~i~dp~~~KP~DW~d~--~~I~dp~~~kpedWded  245 (249)
T d1jhna4         212 SAIGLELWSMTSDIFFD--NFIVCGDRRVVDDWAND  245 (249)
T ss_dssp             EEEEECCCCSSSCCBCE--EEEEESSSHHHHHHHHH
T ss_pred             ccCCCcccCCCCCcccc--ccccCCCcCChhhhhhh
Confidence            56999999999999975  69999999999999875