Psyllid ID: psy742
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 713 | 2.2.26 [Sep-21-2011] | |||||||
| Q8R422 | 1442 | CD109 antigen OS=Mus musc | yes | N/A | 0.740 | 0.366 | 0.25 | 2e-34 | |
| Q6YHK3 | 1445 | CD109 antigen OS=Homo sap | yes | N/A | 0.549 | 0.271 | 0.271 | 3e-32 | |
| Q8IZJ3 | 1885 | C3 and PZP-like alpha-2-m | no | N/A | 0.572 | 0.216 | 0.299 | 9e-32 | |
| Q61838 | 1495 | Alpha-2-macroglobulin OS= | no | N/A | 0.360 | 0.171 | 0.302 | 6e-25 | |
| Q63041 | 1500 | Alpha-1-macroglobulin OS= | no | N/A | 0.349 | 0.166 | 0.296 | 3e-23 | |
| P20740 | 1473 | Ovostatin OS=Gallus gallu | no | N/A | 0.514 | 0.249 | 0.256 | 8e-22 | |
| Q6IE52 | 1448 | Murinoglobulin-2 OS=Rattu | no | N/A | 0.520 | 0.256 | 0.249 | 3e-20 | |
| Q5R4N8 | 1474 | Alpha-2-macroglobulin OS= | no | N/A | 0.361 | 0.175 | 0.283 | 3e-20 | |
| P14046 | 1477 | Alpha-1-inhibitor 3 OS=Ra | no | N/A | 0.524 | 0.253 | 0.256 | 3e-20 | |
| P01023 | 1474 | Alpha-2-macroglobulin OS= | no | N/A | 0.394 | 0.190 | 0.266 | 6e-20 |
| >sp|Q8R422|CD109_MOUSE CD109 antigen OS=Mus musculus GN=Cd109 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 162/648 (25%), Positives = 293/648 (45%), Gaps = 120/648 (18%)
Query: 34 EMAPSATIVVYNVGRNGDVIADSLTFPVNGISRNNVNATVVFLPIVPVHLGDIDVTVTAS 93
E + S I++ + NG + ++ P R+N T+VF PI P HLG+I +TVTA+
Sbjct: 787 EESDSFDILMTSNDTNGTIYRKTVQVP-----RDN-GVTLVF-PIKPTHLGEIPITVTAA 839
Query: 94 SLIGRDTVTRKLHIIADGLPQHRHQSILLDLSNRAYVFQYLHVNVTETPIIPYDVDRYY- 152
S D VT+ + + +G+ + +S+LLDL++ + + + P +R
Sbjct: 840 SPTASDAVTQTIVVKPEGIEKSYSKSVLLDLTDSNVESKQQSMRFSFPPDTVIGSERVQI 899
Query: 153 -----VYGSSINSSSISTLKM--------LLWYS--CLLCLYIWETLMLPLQVITQAVSW 197
+ GSSIN S S ++M +++++ + Y+ + L + + +A+S+
Sbjct: 900 TAIGDILGSSINGLS-SLIRMPYGCGEQNMIYFAPNIYILDYLTKQKQLTVNLKEKALSY 958
Query: 198 V-------LDHQTPDGSFYE--------TTWL----------------VDRKV-NSSLNW 225
+ L +Q DGSF +TWL +D+ V + + W
Sbjct: 959 MRQGYQRELLYQREDGSFSAFGDIDSSGSTWLSAFVLRCFLEADYYIDIDQDVLHRTYTW 1018
Query: 226 PNDDVKFRN--------------------ISLTAHVLITLDTVKDLTGGLGARVSLAQSK 265
N KF ++LTA+++ ++ K + +
Sbjct: 1019 LNAHKKFNGEFWEPGRVIHSELQGGTKSPVTLTAYIVTSVLGYKKYQPNIDVQ------D 1072
Query: 266 AIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGILTQHARSEGGLTYWGKEP 325
+IK+LE + D Y +AI++YAL + AE A +L Q + EG +W
Sbjct: 1073 SIKFLE--FEFSRGISDNYTLAIISYALSTVGSPKAEEALNLLMQRSEKEGDTQFW---- 1126
Query: 326 VPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQELLTDPIVKWLNSQRLTD 385
+ + P+ + +P +++IE AYALL + P+++WL QR +
Sbjct: 1127 LSSGPALSGSWQP----------RSVDIEIAAYALLAHTLHHVSEGIPVMRWLIQQRNSL 1176
Query: 386 GGWASTQDTAMAMKALIEYTNR-HRLRDVSYLTVSIEATALPGQVKYLHVKNNNLAQLQR 444
GG+ STQDT +A+KAL E++ H+ LTV+ +P + + + + NL L +
Sbjct: 1177 GGFVSTQDTVVALKALSEFSALVHKENTDIQLTVT--GPGIPRSI-HFRIDSQNLFLLHQ 1233
Query: 445 IEIPQAWG--TVKVQASGAGYAILQMSVDYNVDIA----KFQTQPPVPAFALNTRANFHG 498
E+ A TV V A G+G+AI Q++VDYNV + + ++ F L+ N +
Sbjct: 1234 EEL-HALDPITVNVSAHGSGFAICQLNVDYNVKGSGSSKRRRSTENQEVFDLDVIVN-NE 1291
Query: 499 RNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQKLDAYIRTRNVPNLQRARF 558
+ SH+ + C + S R+GM +++V + +G+ + L++ +
Sbjct: 1292 DDISHLNLNVCTSHL---GSERTGMVLMEVNLLSGFSASSDSIPL------SETLKKVEY 1342
Query: 559 QEQKVLFYFDYLDDTETCINFTIERWFPVANMSRYLPIRVYDYYAPER 606
K+ Y D +++++ C+N R + V+N+ R + V DYY P R
Sbjct: 1343 DNGKLNLYLDSVNESQFCVNIPTVRDYKVSNI-RDGSVSVMDYYEPRR 1389
|
Modulates negatively TGFB1 signaling in keratinocytes. Mus musculus (taxid: 10090) |
| >sp|Q6YHK3|CD109_HUMAN CD109 antigen OS=Homo sapiens GN=CD109 PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|Q8IZJ3|CPMD8_HUMAN C3 and PZP-like alpha-2-macroglobulin domain-containing protein 8 OS=Homo sapiens GN=CPAMD8 PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|Q61838|A2M_MOUSE Alpha-2-macroglobulin OS=Mus musculus GN=A2m PE=1 SV=3 | Back alignment and function description |
|---|
| >sp|Q63041|A1M_RAT Alpha-1-macroglobulin OS=Rattus norvegicus GN=A1m PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|P20740|OVOS_CHICK Ovostatin OS=Gallus gallus PE=1 SV=3 | Back alignment and function description |
|---|
| >sp|Q6IE52|MUG2_RAT Murinoglobulin-2 OS=Rattus norvegicus GN=Mug2 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q5R4N8|A2MG_PONAB Alpha-2-macroglobulin OS=Pongo abelii GN=A2M PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|P14046|A1I3_RAT Alpha-1-inhibitor 3 OS=Rattus norvegicus GN=A1i3 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|P01023|A2MG_HUMAN Alpha-2-macroglobulin OS=Homo sapiens GN=A2M PE=1 SV=3 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 713 | ||||||
| 340722713 | 1626 | PREDICTED: CD109 antigen [Bombus terrest | 0.676 | 0.296 | 0.745 | 0.0 | |
| 383857206 | 1628 | PREDICTED: CD109 antigen-like [Megachile | 0.666 | 0.291 | 0.754 | 0.0 | |
| 242012592 | 1690 | conserved hypothetical protein [Pediculu | 0.676 | 0.285 | 0.731 | 0.0 | |
| 350424361 | 1626 | PREDICTED: CD109 antigen-like [Bombus im | 0.676 | 0.296 | 0.743 | 0.0 | |
| 328792914 | 1612 | PREDICTED: CD109 antigen [Apis mellifera | 0.676 | 0.299 | 0.737 | 0.0 | |
| 322788458 | 1638 | hypothetical protein SINV_07362 [Solenop | 0.666 | 0.289 | 0.733 | 0.0 | |
| 307189197 | 1638 | CD109 antigen [Camponotus floridanus] | 0.666 | 0.289 | 0.734 | 0.0 | |
| 328720350 | 1635 | PREDICTED: CD109 antigen-like [Acyrthosi | 0.657 | 0.286 | 0.705 | 0.0 | |
| 332017032 | 1633 | CD109 antigen [Acromyrmex echinatior] | 0.664 | 0.290 | 0.705 | 0.0 | |
| 307204248 | 1629 | CD109 antigen [Harpegnathos saltator] | 0.663 | 0.290 | 0.703 | 0.0 |
| >gi|340722713|ref|XP_003399747.1| PREDICTED: CD109 antigen [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/483 (74%), Positives = 411/483 (85%), Gaps = 1/483 (0%)
Query: 178 LYIWET-LMLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNIS 236
Y WE L + +VI QAVSW+L +QTP+GSFYE TW+ DRK+NSSLN+ +D + RNIS
Sbjct: 1132 FYEWENYLYIDPEVIAQAVSWLLKYQTPEGSFYEVTWMPDRKMNSSLNYDDDIITHRNIS 1191
Query: 237 LTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLS 296
LTAHVLITL +VKDL GLG +V+++ + AIKWLERNL+LL+ G PYE+AIV+YAL L+
Sbjct: 1192 LTAHVLITLQSVKDLPEGLGTQVAVSAAGAIKWLERNLKLLEVRGKPYEIAIVSYALLLA 1251
Query: 297 KATIAEAAFGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETT 356
KA+ A AF IL++HAR EGGLTYWG+E VP PP K+ENQKPFLLPRLPY YD+ NIETT
Sbjct: 1252 KASTAGQAFNILSRHARREGGLTYWGRESVPLPPYKLENQKPFLLPRLPYMYDSENIETT 1311
Query: 357 AYALLVYVSRQELLTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEYTNRHRLRDVSYL 416
AYALLV+V+RQE++ +PIVKWLNSQRLTDGGWASTQDTA AMKAL++YT R R+RDVS L
Sbjct: 1312 AYALLVHVARQEIMLEPIVKWLNSQRLTDGGWASTQDTAWAMKALMDYTVRSRIRDVSSL 1371
Query: 417 TVSIEATALPGQVKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDI 476
V++EATALPGQ K L V +NNLA+LQ IEIP+AWGTVKVQA GAGYAILQMSV YNVDI
Sbjct: 1372 AVTVEATALPGQTKTLFVNDNNLARLQTIEIPEAWGTVKVQAKGAGYAILQMSVQYNVDI 1431
Query: 477 AKFQTQPPVPAFALNTRANFHGRNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYII 536
AKFQTQPPV +F L TRANFHGRNQSHI+Y SCQRWI NES+RSGMAVLDVAIPTGYII
Sbjct: 1432 AKFQTQPPVKSFDLVTRANFHGRNQSHISYLSCQRWINTNESSRSGMAVLDVAIPTGYII 1491
Query: 537 QQQKLDAYIRTRNVPNLQRARFQEQKVLFYFDYLDDTETCINFTIERWFPVANMSRYLPI 596
QQQ LD YI+++ V NLQRARF E+KVLFYFDYLD ETC+NFTIERWFPVANMSRYLPI
Sbjct: 1492 QQQTLDRYIQSKQVRNLQRARFHEKKVLFYFDYLDQEETCVNFTIERWFPVANMSRYLPI 1551
Query: 597 RVYDYYAPERFNETIFDALPTYLLNICEVCGSSQCPYCPIYNLAVALSCPPVFFLSFFVL 656
R+YDYYAPERFNETIFDALPTY LNICEVCGSSQCPYCPIYN A L+ P F L+ VL
Sbjct: 1552 RIYDYYAPERFNETIFDALPTYTLNICEVCGSSQCPYCPIYNTATMLATPTGFLLAISVL 1611
Query: 657 SVV 659
VV
Sbjct: 1612 VVV 1614
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383857206|ref|XP_003704096.1| PREDICTED: CD109 antigen-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
| >gi|242012592|ref|XP_002427015.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212511253|gb|EEB14277.1| conserved hypothetical protein [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
| >gi|350424361|ref|XP_003493770.1| PREDICTED: CD109 antigen-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
| >gi|328792914|ref|XP_397416.3| PREDICTED: CD109 antigen [Apis mellifera] | Back alignment and taxonomy information |
|---|
| >gi|322788458|gb|EFZ14127.1| hypothetical protein SINV_07362 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
| >gi|307189197|gb|EFN73645.1| CD109 antigen [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
| >gi|328720350|ref|XP_001948864.2| PREDICTED: CD109 antigen-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
| >gi|332017032|gb|EGI57831.1| CD109 antigen [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
| >gi|307204248|gb|EFN83045.1| CD109 antigen [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 713 | ||||||
| FB|FBgn0264800 | 1760 | Mcr "Macroglobulin complement- | 0.636 | 0.257 | 0.653 | 2.5e-215 | |
| UNIPROTKB|F1PM26 | 1445 | CD109 "Uncharacterized protein | 0.551 | 0.271 | 0.280 | 3e-37 | |
| UNIPROTKB|F1MPE1 | 1447 | CD109 "Uncharacterized protein | 0.563 | 0.277 | 0.270 | 3.6e-36 | |
| UNIPROTKB|F1NN85 | 1750 | CPAMD8 "Uncharacterized protei | 0.375 | 0.153 | 0.317 | 1.4e-35 | |
| UNIPROTKB|Q6YHK3 | 1445 | CD109 "CD109 antigen" [Homo sa | 0.551 | 0.271 | 0.261 | 3.1e-35 | |
| UNIPROTKB|K7GP25 | 1368 | CD109 "Uncharacterized protein | 0.551 | 0.287 | 0.273 | 3.7e-35 | |
| UNIPROTKB|K7GKY0 | 1449 | CD109 "Uncharacterized protein | 0.551 | 0.271 | 0.273 | 4.4e-35 | |
| UNIPROTKB|F1RQH9 | 1450 | CD109 "Uncharacterized protein | 0.551 | 0.271 | 0.272 | 4.4e-34 | |
| UNIPROTKB|E1BAA2 | 1792 | CPAMD8 "Uncharacterized protei | 0.495 | 0.196 | 0.333 | 8.9e-34 | |
| UNIPROTKB|F1S9U5 | 1869 | CPAMD8 "Uncharacterized protei | 0.527 | 0.201 | 0.323 | 8.9e-34 |
| FB|FBgn0264800 Mcr "Macroglobulin complement-related" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1624 (576.7 bits), Expect = 2.5e-215, Sum P(3) = 2.5e-215
Identities = 302/462 (65%), Positives = 371/462 (80%)
Query: 179 YIWETLM-LPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISL 237
Y WE + + +I + + W+L HQTP GSF+E TWL DRK+N + N D +NI+L
Sbjct: 1271 YEWENFIWIDATIIEKNMRWLLQHQTPQGSFFEVTWLPDRKMNRT----NFD---KNITL 1323
Query: 238 TAHVLITLDTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSK 297
T+HVLITL TVKD++G LG+RV+LA +A+ ++ERN+ L+ P++VAI AYAL+L
Sbjct: 1324 TSHVLITLATVKDISGTLGSRVALATQRALAYIERNMDFLRHQAQPFDVAITAYALQLCN 1383
Query: 298 ATIAEAAFGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTA 357
+ IAE F IL + AR+ G YWG + +P PP K+ENQK F LPRLPY+YD++NIETTA
Sbjct: 1384 SPIAEEVFAILRRQARTIGDFMYWGNQEIPQPPRKLENQKWFSLPRLPYEYDSLNIETTA 1443
Query: 358 YALLVYVSRQELLTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEYTNRHRLRDVSYLT 417
YALLVYV+R+E DPIV+WLNSQRL DGGWASTQDT+ A+KAL+EYT R RLR+VS LT
Sbjct: 1444 YALLVYVARREFFVDPIVRWLNSQRLNDGGWASTQDTSAALKALVEYTVRSRLREVSSLT 1503
Query: 418 VSIEATALPGQVKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDIA 477
V IEA++ G+ + L++ + NLA+LQ IEIP AWGT+KVQA GAGYAILQM V YNVDI
Sbjct: 1504 VEIEASSQGGKTQTLYIDDTNLAKLQSIEIPDAWGTIKVQAKGAGYAILQMHVQYNVDIE 1563
Query: 478 KFQTQPPVPAFALNTRANFHGRNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQ 537
KFQT+PPVPAF L+T+A FHGRNQSHI+Y +CQ WI QNES RSGMAVLDVAIPTGY IQ
Sbjct: 1564 KFQTKPPVPAFGLHTKAIFHGRNQSHISYVACQNWINQNESERSGMAVLDVAIPTGYWIQ 1623
Query: 538 QQKLDAYIRTRNVPNLQRARFQEQKVLFYFDYLDDTETCINFTIERWFPVANMSRYLPIR 597
QQKLD Y+ + V NL+RAR+ E+K++FYFDYLD + C+NFTIERW+PVANMSRYLP+R
Sbjct: 1624 QQKLDTYVLSNRVRNLRRARYLERKIVFYFDYLDHEDICVNFTIERWYPVANMSRYLPVR 1683
Query: 598 VYDYYAPERFNETIFDALPTYLLNICEVCGSSQCPYCPIYNL 639
+YDYYAPERFNE+IFDALPTYLLNICEVCGSSQCPYC IYN+
Sbjct: 1684 IYDYYAPERFNESIFDALPTYLLNICEVCGSSQCPYCSIYNM 1725
|
|
| UNIPROTKB|F1PM26 CD109 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1MPE1 CD109 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NN85 CPAMD8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q6YHK3 CD109 "CD109 antigen" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|K7GP25 CD109 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|K7GKY0 CD109 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1RQH9 CD109 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BAA2 CPAMD8 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1S9U5 CPAMD8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 713 | |||
| pfam07678 | 248 | pfam07678, A2M_comp, A-macroglobulin complement co | 5e-62 | |
| cd02896 | 297 | cd02896, complement_C3_C4_C5, Proteins similar to | 1e-34 | |
| cd02897 | 292 | cd02897, A2M_2, Proteins similar to alpha2-macrogl | 3e-33 | |
| cd02891 | 282 | cd02891, A2M_like, Proteins similar to alpha2-macr | 5e-31 | |
| pfam07677 | 90 | pfam07677, A2M_recep, A-macroglobulin receptor | 9e-25 | |
| cd00688 | 300 | cd00688, ISOPREN_C2_like, This group contains clas | 7e-21 | |
| pfam07703 | 136 | pfam07703, A2M_N_2, Alpha-2-macroglobulin family N | 1e-05 |
| >gnl|CDD|219510 pfam07678, A2M_comp, A-macroglobulin complement component | Back alignment and domain information |
|---|
Score = 207 bits (529), Expect = 5e-62
Identities = 81/221 (36%), Positives = 116/221 (52%), Gaps = 22/221 (9%)
Query: 186 LPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITL 245
+ Q I Q+++W+L Q PDGSF E + R++ + +++LTA VLI L
Sbjct: 46 IDEQHICQSLNWLLSQQKPDGSFREPGPVFHREMKGGVE--------DDVTLTAFVLIAL 97
Query: 246 DTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLS-KATIAEAA 304
D+ +RV A KA+++LE + + PY +AI AYAL L+ K+ A
Sbjct: 98 LEALDILPDELSRVDPAIDKALEYLESAV---EGLNRPYTLAITAYALTLAGKSPQASEL 154
Query: 305 FGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYV 364
L A+ EG YW ++ K P Y A +ETTAYALL Y+
Sbjct: 155 LEKLKALAQEEGNSRYWERDEKSKDSGK---------PLYWYSAPAAEVETTAYALLAYL 205
Query: 365 SRQEL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEY 404
S +L DPIV+WL SQR + GG++STQDT +A++AL EY
Sbjct: 206 SLGDLTYADPIVRWLTSQRNSGGGFSSTQDTVVALQALSEY 246
|
This family includes the complement components region of the alpha-2-macroglobulin family. Length = 248 |
| >gnl|CDD|239226 cd02896, complement_C3_C4_C5, Proteins similar to C3, C4 and C5 of vertebrate complement | Back alignment and domain information |
|---|
| >gnl|CDD|239227 cd02897, A2M_2, Proteins similar to alpha2-macroglobulin (alpha (2)-M) | Back alignment and domain information |
|---|
| >gnl|CDD|239221 cd02891, A2M_like, Proteins similar to alpha2-macroglobulin (alpha (2)-M) | Back alignment and domain information |
|---|
| >gnl|CDD|203720 pfam07677, A2M_recep, A-macroglobulin receptor | Back alignment and domain information |
|---|
| >gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement | Back alignment and domain information |
|---|
| >gnl|CDD|219528 pfam07703, A2M_N_2, Alpha-2-macroglobulin family N-terminal region | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 713 | |||
| KOG1366|consensus | 1436 | 100.0 | ||
| PF07678 | 246 | A2M_comp: A-macroglobulin complement component; In | 100.0 | |
| cd02896 | 297 | complement_C3_C4_C5 Proteins similar to C3, C4 and | 100.0 | |
| cd02897 | 292 | A2M_2 Proteins similar to alpha2-macroglobulin (al | 100.0 | |
| cd02891 | 282 | A2M_like Proteins similar to alpha2-macroglobulin | 99.95 | |
| PF07677 | 91 | A2M_recep: A-macroglobulin receptor; InterPro: IPR | 99.91 | |
| COG2373 | 1621 | Large extracellular alpha-helical protein [General | 99.73 | |
| cd02889 | 348 | SQCY Squalene cyclase (SQCY) domain; found in clas | 99.7 | |
| cd00688 | 300 | ISOPREN_C2_like This group contains class II terpe | 99.6 | |
| cd02892 | 634 | SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; | 99.5 | |
| cd00688 | 300 | ISOPREN_C2_like This group contains class II terpe | 99.02 | |
| TIGR01507 | 635 | hopene_cyclase squalene-hopene cyclase. SHC is an | 98.9 | |
| TIGR03463 | 634 | osq_cycl 2,3-oxidosqualene cyclase. This model ide | 98.89 | |
| TIGR01787 | 621 | squalene_cyclas squalene/oxidosqualene cyclases. T | 98.82 | |
| cd02897 | 292 | A2M_2 Proteins similar to alpha2-macroglobulin (al | 98.79 | |
| cd02889 | 348 | SQCY Squalene cyclase (SQCY) domain; found in clas | 98.72 | |
| PLN03012 | 759 | Camelliol C synthase | 98.67 | |
| cd02896 | 297 | complement_C3_C4_C5 Proteins similar to C3, C4 and | 98.55 | |
| PLN02993 | 763 | lupeol synthase | 98.52 | |
| cd02891 | 282 | A2M_like Proteins similar to alpha2-macroglobulin | 98.43 | |
| PF13249 | 113 | Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B | 98.22 | |
| cd02892 | 634 | SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; | 98.02 | |
| TIGR03463 | 634 | osq_cycl 2,3-oxidosqualene cyclase. This model ide | 97.97 | |
| TIGR01507 | 635 | hopene_cyclase squalene-hopene cyclase. SHC is an | 97.92 | |
| cd02890 | 286 | PTase Protein prenyltransferase (PTase) domain, be | 97.77 | |
| TIGR01787 | 621 | squalene_cyclas squalene/oxidosqualene cyclases. T | 97.58 | |
| cd02890 | 286 | PTase Protein prenyltransferase (PTase) domain, be | 97.45 | |
| PF07678 | 246 | A2M_comp: A-macroglobulin complement component; In | 97.33 | |
| cd02893 | 299 | FTase Protein farnesyltransferase (FTase)_like pro | 97.25 | |
| cd02894 | 287 | GGTase-II Geranylgeranyltransferase type II (GGTas | 97.2 | |
| COG1689 | 274 | Uncharacterized protein conserved in archaea [Func | 97.17 | |
| cd02894 | 287 | GGTase-II Geranylgeranyltransferase type II (GGTas | 97.1 | |
| PLN03012 | 759 | Camelliol C synthase | 96.86 | |
| PLN03201 | 316 | RAB geranylgeranyl transferase beta-subunit; Provi | 96.68 | |
| PLN02993 | 763 | lupeol synthase | 96.65 | |
| PF13243 | 109 | Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A | 96.52 | |
| PF13249 | 113 | Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B | 96.2 | |
| cd02895 | 307 | GGTase-I Geranylgeranyltransferase types I (GGTase | 96.03 | |
| PLN02710 | 439 | farnesyltranstransferase subunit beta | 95.87 | |
| cd02893 | 299 | FTase Protein farnesyltransferase (FTase)_like pro | 95.75 | |
| PLN03201 | 316 | RAB geranylgeranyl transferase beta-subunit; Provi | 95.66 | |
| PF13243 | 109 | Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A | 95.64 | |
| PF01122 | 326 | Cobalamin_bind: Eukaryotic cobalamin-binding prote | 94.91 | |
| cd02895 | 307 | GGTase-I Geranylgeranyltransferase types I (GGTase | 94.66 | |
| KOG0497|consensus | 760 | 94.14 | ||
| KOG0365|consensus | 423 | 90.99 | ||
| ) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF00432 | 44 | Prenyltrans: Prenyltransferase and squalene oxidas | 90.71 | |
| COG5029 | 342 | CAL1 Prenyltransferase, beta subunit [Posttranslat | 89.13 | |
| KOG0366|consensus | 329 | 84.62 | ||
| ) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF00432 | 44 | Prenyltrans: Prenyltransferase and squalene oxidas | 84.47 | |
| KOG0497|consensus | 760 | 83.5 |
| >KOG1366|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-79 Score=742.28 Aligned_cols=568 Identities=30% Similarity=0.446 Sum_probs=462.3
Q ss_pred cceeEeeeeeEEEE-----EEEEEEeeCCCEEEEeccCCCccce---eeEE--eeCCcccccccccEEEEEEEEecceee
Q psy742 16 GQENMQSTIRSFAV-----SLSAEMAPSATIVVYNVGRNGDVIA---DSLT--FPVNGISRNNVNATVVFLPIVPVHLGD 85 (713)
Q Consensus 16 ~~~~~~~~~~~f~~-----~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~V~F~I~p~~lG~ 85 (713)
-||.+++++++|-. .|+|+|.+++++|+......++... .++. +-.+.. +++.|+|+|+|..+|.
T Consensus 775 RgE~i~l~~tv~NYl~k~~~v~V~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----s~~~~~~~v~p~~~g~ 849 (1436)
T KOG1366|consen 775 RGEQIALRVTVFNYLTKELDVSVILLSSEDFCYDATSKANEQVGVSQRSVQVSRVTPAQ-----SGKLVYFPVRPGVIGL 849 (1436)
T ss_pred eCcEeEEeEEEecccCcceEEEEEEccCCCeeeecccccCcccccccceEEEEEEcccc-----cceEEEEEeccccccc
Confidence 48999999999954 9999999999999997433333322 1111 111111 3899999999999999
Q ss_pred EEEEEEEEecCCCceEEEEEEEecCCeEEEEeEeeeeecccccceeeeeeeccCCCCccCCCCc-eEEEEecC-----CC
Q psy742 86 IDVTVTASSLIGRDTVTRKLHIIADGLPQHRHQSILLDLSNRAYVFQYLHVNVTETPIIPYDVD-RYYVYGSS-----IN 159 (713)
Q Consensus 86 i~I~V~A~s~~~sD~V~~~L~V~peGv~~~~~~s~~ld~~~~~~~~~~~~~~~p~~~~ip~s~~-~~~v~Gs~-----~~ 159 (713)
++++++|.+..+.|+|+|+|+|+|||++++++++.+||++. ...+.+.+.+|.+ .+|+++. ++.+.|+. +|
T Consensus 850 ~~~~~~~~t~~~~dav~k~l~V~~eG~~~~~~~~~~i~l~~--~~~~~~~~~~p~~-~V~~S~~~~~~~vgD~lGps~~~ 926 (1436)
T KOG1366|consen 850 ILVTISALTLLGGDAVHKTLLVEPEGITQERNFSVLIDLSV--SASKELSLGVPND-VVPGSERARISVVGDVLGPSMNN 926 (1436)
T ss_pred cceEEEEeecCCCccEEEEEEEeccCccceeeeeEEeccCC--CcCcceeecCCCC-cCccccceeeEEEecccccChhh
Confidence 99999999999999999999999999999999999999983 3456667777775 7899854 77888776 88
Q ss_pred ccccccccch-----------------------------------------------------------------hhhhh
Q psy742 160 SSSISTLKML-----------------------------------------------------------------LWYSC 174 (713)
Q Consensus 160 l~sLi~~P~g-----------------------------------------------------------------tWL~T 174 (713)
+++|++|||| ||| |
T Consensus 927 l~~Ll~lP~GcGEQnMi~faPni~v~~YL~~t~q~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWL-t 1005 (1436)
T KOG1366|consen 927 LSNLLRLPYGCGEQNMINFAPNIYVLKYLPKTNQLTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWL-T 1005 (1436)
T ss_pred hHHhccCCCCcccceeecccchhhHHHHHhhhhccChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHH-H
Confidence 9999999998 999 9
Q ss_pred hHH---hhhhhcc-CCCHHHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhccc
Q psy742 175 LLC---LYIWETL-MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKD 250 (713)
Q Consensus 175 AfV---F~qa~~~-~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~ 250 (713)
||| |.+|++| +||+++|++++.||.++|++||+|.+.|+++|++|||++++ .+.|||+++..+.+..
T Consensus 1006 afvlr~f~~a~~~i~id~~~i~~a~~wl~~~Qk~~GsF~e~~~v~~~~~qg~l~~--------~~~l~~~~l~~~~~~~- 1076 (1436)
T KOG1366|consen 1006 AFVLRVFSQAKEYIFIDPNVITQALNWLSQQQKENGSFKEVGEVLHNEMQGGLQD--------IVALTAIVLSVILDVD- 1076 (1436)
T ss_pred HHHHHHhhhccCceEecHHHHHHHHHHHHHhhccCceEeccccccchhhhcCCCC--------cceeeeEeeeeeccch-
Confidence 999 9999999 99999999999999999999999999999999999987653 2789999999885432
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHhcCCccHHHHHHHHHHhhhccCCceeecCCC-CCCC
Q psy742 251 LTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGILTQHARSEGGLTYWGKEP-VPAP 329 (713)
Q Consensus 251 l~~g~~~~~~~~~~kA~~yLe~~~~~~~~~~~~YtlAl~aYALaLa~~~~~~~al~~L~~~a~~~~~~~~W~~~~-~~~~ 329 (713)
.....+|..|++++++... .++|+.|+++|||.++++|.+..++..|+..++.+++..||.... .+.+
T Consensus 1077 ---------~~~~~~a~~~~~~~~~~~~--~~~~~~a~~ayAl~l~~sp~a~~~~~~l~~~a~~~~d~~~~~~~~~~~~~ 1145 (1436)
T KOG1366|consen 1077 ---------NASIQKAVAYLEESLDSGS--MDVYTVAITAYALQLAKSPQAAKALAKLKSLARVEGDRRYWWASALKAKN 1145 (1436)
T ss_pred ---------hhHHHHHHHHHhhccCccc--cccchHHHHHHHHHhccCchHHHHHHhhhhhhcccCCceeeeeccccccC
Confidence 2467999999999998752 399999999999999999999888888999999888766554432 2111
Q ss_pred CCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc-chhHHHHHHHhcccCCCCccchhhHHHHHHHHHHHHHhc
Q psy742 330 PSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEYTNRH 408 (713)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~-~a~~Iv~WL~~Qrn~~GGF~STQDTvvALqALa~Ya~~~ 408 (713)
+. . | +...++.+||+||||||+++.+++. .+.||+|||++|||..|||+|||||++|||||++|+...
T Consensus 1146 ~~-----~--~----~~q~~s~~VE~tsYaLL~~~~~~~~~~~~pivrWl~~qr~~~GGf~STQdTvvalqaLs~y~~~~ 1214 (1436)
T KOG1366|consen 1146 AV-----K--Y----SPQARSIDVETTAYALLAYLLLAQVDYALPIVRWLVEQRNALGGFSSTQDTVVALQALSEYAALS 1214 (1436)
T ss_pred cc-----c--C----CCccchhhccchHHHHHHHHHhcccCcCchhHhhhhhhhcccCceeehHHHHHHHHHHHHhhhhc
Confidence 11 0 1 1123689999999999999999988 999999999999999999999999999999999999988
Q ss_pred ccCCcceeEEEEEEecCCCceeEEEEeccCcceeEeEEecCCCceEEEEEEeeeEEEEEEEEEEeeccccccCCCCCCCe
Q psy742 409 RLRDVSYLTVSIEATALPGQVKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDIAKFQTQPPVPAF 488 (713)
Q Consensus 409 ~~~~~~~l~v~V~~~~~~~~~~~~~I~~~N~~~~q~~~lp~~~g~v~v~a~G~G~a~~q~~~~Yn~~~~~~~~~~~~~~F 488 (713)
+... ..++|++...+......++.+...|.+++|+.++|..++.+.++++|.||+++|+.++||+..++ +++.|
T Consensus 1215 ~~~~-~~~~V~i~~~~~~~~~~~~~~~~~N~lllQ~~~~p~~~~~v~~ta~G~g~~~~q~~~~Ynv~~~~-----~~~~f 1288 (1436)
T KOG1366|consen 1215 HTET-LSLQVTIQVPGKSSGTSQVDSTPNNLLLLQSVSLPSLHKTVCFTAKGQGCATVQISYTYNLLTPK-----SDPRF 1288 (1436)
T ss_pred ccce-eEEEEEEEecccCCCceeeeccccchhhcceeecccCCCceEEEEecceeEEEEeeEEEeecCcc-----cCCCc
Confidence 7533 34567776644333334455558899999999999999999999999999999999999998753 56789
Q ss_pred eEEEEeec--cCCCCceeEEEEEEEeeccCCCCccceEEEEEecCcceeecccchHHHhccCCCCcceeE--EEeCCEEE
Q psy742 489 ALNTRANF--HGRNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQKLDAYIRTRNVPNLQRA--RFQEQKVL 564 (713)
Q Consensus 489 ~L~v~~~~--~~~~~~~~~l~vC~~~~~~~~~~~s~MaiveV~lpSGf~~~~~~L~~l~~~~~~~~i~~~--E~~d~~V~ 564 (713)
.|.+.... ...+..+..+..|..+...+.++.|||||+||+|||||.++.++|..+.... .+.+. +..+.+|+
T Consensus 1289 ~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~SnMAIldVklpSGf~~~~~sl~~le~~~---~v~~~~~~~~~~~v~ 1365 (1436)
T KOG1366|consen 1289 FLIVSTKPEPVEFDLSNIVVVYTTCCERTGSSGRSNMAILDVKLPSGFRADHESLGLLEQLE---DVYRVEVENDHRRVL 1365 (1436)
T ss_pred eeeeeeccccccCccccceEEEEEEEeecCCCCCCCceeeeeecccCcccChhhHHHhhccc---eEEEEEEecCCcceE
Confidence 99887632 2233344433333333344556899999999999999999999999986532 34444 44555699
Q ss_pred EEEecCC-CceeEEEEEEEEEeeeeccccceeEEEEeccCCCceeEEEeecCcccccccccccCCCCCCCCCC
Q psy742 565 FYFDYLD-DTETCINFTIERWFPVANMSRYLPIRVYDYYAPERFNETIFDALPTYLLNICEVCGSSQCPYCPI 636 (713)
Q Consensus 565 lYfd~l~-~~~~cv~f~~~~~~~V~~~~~pa~v~VYDYY~P~~~~~~~y~~~~~~~~~~C~~C~~~~C~~c~~ 636 (713)
+|||+++ ++..|+.|++.++++|+++ +||+++|||||+||++|+.+|+....+ +|++|.+.+|+.|..
T Consensus 1366 ~Y~D~v~~~~~~cv~F~a~~~~~V~~~-kpa~v~VYDYY~pee~~t~~Y~~~~~~---~~~~c~~~~c~~~c~ 1434 (1436)
T KOG1366|consen 1366 IYFDSVSGNETFCVRFEAVQSFPVANL-KPASVTVYDYYEPEEQATRFYNAESSS---SCDVCEGAQCKCPCE 1434 (1436)
T ss_pred EEeeccCCCCceEEEEEEEEEeehhcc-CCceEEEeeccCchhhhhhhhcccccc---hhhhcccccCCcCCC
Confidence 9999999 6999999999999999999 699999999999999988888764322 888888889986654
|
|
| >PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family | Back alignment and domain information |
|---|
| >cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement | Back alignment and domain information |
|---|
| >cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) | Back alignment and domain information |
|---|
| >cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) | Back alignment and domain information |
|---|
| >PF07677 A2M_recep: A-macroglobulin receptor; InterPro: IPR009048 This entry represents the receptor-binding domain (RBD) of alpha-2-macroglobulin proteins | Back alignment and domain information |
|---|
| >COG2373 Large extracellular alpha-helical protein [General function prediction only] | Back alignment and domain information |
|---|
| >cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold | Back alignment and domain information |
|---|
| >cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement | Back alignment and domain information |
|---|
| >cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold | Back alignment and domain information |
|---|
| >cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement | Back alignment and domain information |
|---|
| >TIGR01507 hopene_cyclase squalene-hopene cyclase | Back alignment and domain information |
|---|
| >TIGR03463 osq_cycl 2,3-oxidosqualene cyclase | Back alignment and domain information |
|---|
| >TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases | Back alignment and domain information |
|---|
| >cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) | Back alignment and domain information |
|---|
| >cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold | Back alignment and domain information |
|---|
| >PLN03012 Camelliol C synthase | Back alignment and domain information |
|---|
| >cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement | Back alignment and domain information |
|---|
| >PLN02993 lupeol synthase | Back alignment and domain information |
|---|
| >cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) | Back alignment and domain information |
|---|
| >PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C | Back alignment and domain information |
|---|
| >cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold | Back alignment and domain information |
|---|
| >TIGR03463 osq_cycl 2,3-oxidosqualene cyclase | Back alignment and domain information |
|---|
| >TIGR01507 hopene_cyclase squalene-hopene cyclase | Back alignment and domain information |
|---|
| >cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) | Back alignment and domain information |
|---|
| >TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases | Back alignment and domain information |
|---|
| >cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) | Back alignment and domain information |
|---|
| >PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family | Back alignment and domain information |
|---|
| >cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) | Back alignment and domain information |
|---|
| >cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) | Back alignment and domain information |
|---|
| >COG1689 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
| >cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) | Back alignment and domain information |
|---|
| >PLN03012 Camelliol C synthase | Back alignment and domain information |
|---|
| >PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional | Back alignment and domain information |
|---|
| >PLN02993 lupeol synthase | Back alignment and domain information |
|---|
| >PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A | Back alignment and domain information |
|---|
| >PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C | Back alignment and domain information |
|---|
| >cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) | Back alignment and domain information |
|---|
| >PLN02710 farnesyltranstransferase subunit beta | Back alignment and domain information |
|---|
| >cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) | Back alignment and domain information |
|---|
| >PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional | Back alignment and domain information |
|---|
| >PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A | Back alignment and domain information |
|---|
| >PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals | Back alignment and domain information |
|---|
| >cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) | Back alignment and domain information |
|---|
| >KOG0497|consensus | Back alignment and domain information |
|---|
| >KOG0365|consensus | Back alignment and domain information |
|---|
| >PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family | Back alignment and domain information |
|---|
| >COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0366|consensus | Back alignment and domain information |
|---|
| >PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family | Back alignment and domain information |
|---|
| >KOG0497|consensus | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 713 | ||||
| 4d93_A | 1323 | Crystal Structure Of Tep1s Length = 1323 | 5e-28 | ||
| 2pn5_A | 1325 | Crystal Structure Of Tep1r Length = 1325 | 3e-27 | ||
| 4d94_A | 1325 | Crystal Structure Of Tep1r Length = 1325 | 3e-27 | ||
| 4acq_A | 1451 | Alpha-2 Macroglobulin Length = 1451 | 3e-21 | ||
| 2i07_B | 915 | Human Complement Component C3b Length = 915 | 5e-18 | ||
| 2a73_B | 991 | Human Complement Component C3 Length = 991 | 5e-18 | ||
| 2hr0_B | 915 | Structure Of Complement C3b: Insights Into Compleme | 5e-18 | ||
| 2xwb_B | 912 | Crystal Structure Of Complement C3b In Complex With | 5e-18 | ||
| 2b39_A | 1661 | Structure Of Mammalian C3 With An Intact Thioester | 9e-18 | ||
| 3oxu_A | 317 | Complement Components Factor H Ccp19-20 And C3d In | 1e-13 | ||
| 2wy7_A | 310 | Staphylococcus Aureus Complement Subversion Protein | 1e-13 | ||
| 1ghq_A | 308 | Cr2-C3d Complex Structure Length = 308 | 2e-13 | ||
| 1c3d_A | 294 | X-ray Crystal Structure Of C3d: A C3 Fragment And L | 2e-13 | ||
| 1w2s_A | 307 | Solution Structure Of Cr2 Scr 1-2 In Its Complex Wi | 2e-13 | ||
| 2gox_A | 297 | Crystal Structure Of Efb-c / C3d Complex Length = 2 | 2e-13 | ||
| 3prx_B | 1642 | Structure Of Complement C5 In Complex With Cvf And | 3e-12 | ||
| 1qsj_A | 277 | N-Terminally Truncated C3dg Fragment Length = 277 | 4e-12 | ||
| 1qqf_A | 277 | N-Terminally Truncated C3d,G Fragment Of The Comple | 5e-12 | ||
| 4fxk_B | 767 | Human Complement C4 Length = 767 | 1e-09 | ||
| 4fxg_B | 767 | Complement C4 In Complex With Masp-2 Length = 767 | 1e-09 | ||
| 4a5w_A | 1580 | Crystal Structure Of C5b6 Length = 1580 | 8e-09 | ||
| 3prx_A | 1676 | Structure Of Complement C5 In Complex With Cvf And | 9e-09 | ||
| 3cu7_A | 1676 | Human Complement Component 5 Length = 1676 | 9e-09 | ||
| 1hzf_A | 367 | C4adg Fragment Of Human Complement Factor C4a Lengt | 3e-07 | ||
| 1edy_A | 134 | Crystal Structure Of Rat Alpha 1-Macroglobulin Rece | 2e-06 | ||
| 1ayo_A | 130 | Receptor Binding Domain Of Bovine Alpha-2-Macroglob | 2e-04 | ||
| 1bv8_A | 138 | Receptor Domain From Alpha-2-Macroglobulin Length = | 3e-04 | ||
| 4fxg_C | 291 | Complement C4 In Complex With Masp-2 Length = 291 | 8e-04 |
| >pdb|4D93|A Chain A, Crystal Structure Of Tep1s Length = 1323 | Back alignment and structure |
|
| >pdb|2PN5|A Chain A, Crystal Structure Of Tep1r Length = 1325 | Back alignment and structure |
| >pdb|4D94|A Chain A, Crystal Structure Of Tep1r Length = 1325 | Back alignment and structure |
| >pdb|4ACQ|A Chain A, Alpha-2 Macroglobulin Length = 1451 | Back alignment and structure |
| >pdb|2I07|B Chain B, Human Complement Component C3b Length = 915 | Back alignment and structure |
| >pdb|2A73|B Chain B, Human Complement Component C3 Length = 991 | Back alignment and structure |
| >pdb|2HR0|B Chain B, Structure Of Complement C3b: Insights Into Complement Activation And Regulation Length = 915 | Back alignment and structure |
| >pdb|2XWB|B Chain B, Crystal Structure Of Complement C3b In Complex With Factors B And D Length = 912 | Back alignment and structure |
| >pdb|2B39|A Chain A, Structure Of Mammalian C3 With An Intact Thioester At 3a Resolution Length = 1661 | Back alignment and structure |
| >pdb|3OXU|A Chain A, Complement Components Factor H Ccp19-20 And C3d In Complex Length = 317 | Back alignment and structure |
| >pdb|2WY7|A Chain A, Staphylococcus Aureus Complement Subversion Protein Sbi-Iv In Complex With Complement Fragment C3d Revealing An Alternative Binding Mode Length = 310 | Back alignment and structure |
| >pdb|1GHQ|A Chain A, Cr2-C3d Complex Structure Length = 308 | Back alignment and structure |
| >pdb|1C3D|A Chain A, X-ray Crystal Structure Of C3d: A C3 Fragment And Ligand For Complement Receptor 2 Length = 294 | Back alignment and structure |
| >pdb|1W2S|A Chain A, Solution Structure Of Cr2 Scr 1-2 In Its Complex With C3d By X-Ray Scattering Length = 307 | Back alignment and structure |
| >pdb|2GOX|A Chain A, Crystal Structure Of Efb-c / C3d Complex Length = 297 | Back alignment and structure |
| >pdb|3PRX|B Chain B, Structure Of Complement C5 In Complex With Cvf And Ssl7 Length = 1642 | Back alignment and structure |
| >pdb|1QSJ|A Chain A, N-Terminally Truncated C3dg Fragment Length = 277 | Back alignment and structure |
| >pdb|1QQF|A Chain A, N-Terminally Truncated C3d,G Fragment Of The Complement System Length = 277 | Back alignment and structure |
| >pdb|4FXK|B Chain B, Human Complement C4 Length = 767 | Back alignment and structure |
| >pdb|4FXG|B Chain B, Complement C4 In Complex With Masp-2 Length = 767 | Back alignment and structure |
| >pdb|4A5W|A Chain A, Crystal Structure Of C5b6 Length = 1580 | Back alignment and structure |
| >pdb|3PRX|A Chain A, Structure Of Complement C5 In Complex With Cvf And Ssl7 Length = 1676 | Back alignment and structure |
| >pdb|3CU7|A Chain A, Human Complement Component 5 Length = 1676 | Back alignment and structure |
| >pdb|1HZF|A Chain A, C4adg Fragment Of Human Complement Factor C4a Length = 367 | Back alignment and structure |
| >pdb|1EDY|A Chain A, Crystal Structure Of Rat Alpha 1-Macroglobulin Receptor Binding Domain Length = 134 | Back alignment and structure |
| >pdb|1AYO|A Chain A, Receptor Binding Domain Of Bovine Alpha-2-Macroglobulin Length = 130 | Back alignment and structure |
| >pdb|1BV8|A Chain A, Receptor Domain From Alpha-2-Macroglobulin Length = 138 | Back alignment and structure |
| >pdb|4FXG|C Chain C, Complement C4 In Complex With Masp-2 Length = 291 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Length = 1325 | Back alignment and structure |
|---|
Score = 255 bits (651), Expect = 2e-72
Identities = 95/456 (20%), Positives = 183/456 (40%), Gaps = 56/456 (12%)
Query: 185 MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLIT 244
+ ++ +A+ W+ Q G F + +++ L ++LT++VL+
Sbjct: 920 DIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEMQGGLRN--------GVALTSYVLMA 971
Query: 245 LDTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAA 304
L A+ + K + +L + + Y+++I YA+ L+ T+ E A
Sbjct: 972 LL----ENDIAKAKHAEVIQKGMTYLSNQFGSINN---AYDLSIATYAMMLNGHTMKEEA 1024
Query: 305 FGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYV 364
L + + + IETTAYALL +V
Sbjct: 1025 LNKLIDMSFIDADKNER------------------------FWNTTNPIETTAYALLSFV 1060
Query: 365 SRQEL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEYTNRHRLRDVSYLTVSIEAT 423
++ P++ WL +QR G + STQDT + +KAL + + TV ++
Sbjct: 1061 MAEKYTDGIPVMNWLVNQRYVTGSFPSTQDTFVGLKALTKMAEKISPSRND-YTVQLKY- 1118
Query: 424 ALPGQVKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDIAKFQTQP 483
KY + + + ++IP+ +++ G G+ +L++ +N+++ F+
Sbjct: 1119 --KKSAKYFKINSEQIDVENFVDIPEDTKKLEINVGGIGFGLLEVVYQFNLNLVNFE--- 1173
Query: 484 PVPAFALNTRANFHGRNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQKLDA 543
F L+ G + + C +I Q RS MA+++V +P+GY++ + +
Sbjct: 1174 --NRFQLDLEKQNTGSDY-ELRLKVCASYIPQLTDRRSNMALIEVTLPSGYVVDRNPISE 1230
Query: 544 YIRTRNVPNLQRARFQEQKVLFYFDYLDDTETCINFTIERWFPVANMSRYLPIRVYDYYA 603
+ + R+ V+ Y+D + C T R F VA R + VYDYY
Sbjct: 1231 QTKVNPI-QKTEIRYGGTSVVLYYDNMGSERNCFTLTAYRRFKVALK-RPAYVVVYDYYN 1288
Query: 604 PERFNETIFDALPTYLLNICEVCGSSQCP-YCPIYN 638
+++ N+CE+C CP C ++
Sbjct: 1289 TNLNAIKVYEVDKQ---NLCEICDEEDCPAECGGHH 1321
|
| >4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Length = 1451 | Back alignment and structure |
|---|
| >4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Length = 1451 | Back alignment and structure |
|---|
| >3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Length = 1676 | Back alignment and structure |
|---|
| >3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Length = 1676 | Back alignment and structure |
|---|
| >2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Length = 915 | Back alignment and structure |
|---|
| >2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Length = 1661 | Back alignment and structure |
|---|
| >2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Length = 1661 | Back alignment and structure |
|---|
| >3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Length = 1642 | Back alignment and structure |
|---|
| >3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Length = 1642 | Back alignment and structure |
|---|
| >1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Length = 367 | Back alignment and structure |
|---|
| >1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Length = 277 | Back alignment and structure |
|---|
| >2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Length = 310 | Back alignment and structure |
|---|
| >3hrz_C Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_B* 3hs0_C* Length = 379 | Back alignment and structure |
|---|
| >1edy_A Alpha 1-macroglobulin; beta sandwich, pseudo-symmetric dimer, protein binding; 2.30A {Rattus norvegicus} SCOP: b.2.4.1 Length = 134 | Back alignment and structure |
|---|
| >1ayo_A Alpha-2-macroglobulin; receptor binding domain; HET: NAG; 1.90A {Bos taurus} SCOP: b.2.4.1 PDB: 1bv8_A Length = 130 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B* Length = 252 | Back alignment and structure |
|---|
| >2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631 | Back alignment and structure |
|---|
| >3hrz_A Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_A* 3hs0_A* Length = 627 | Back alignment and structure |
|---|
| >1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Length = 732 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 713 | |||
| 3prx_B | 1642 | Cobra venom factor; immune system, complement, imm | 100.0 | |
| 4acq_A | 1451 | Alpha-2-macroglobulin; hydrolase inhibitor, protei | 100.0 | |
| 2b39_A | 1661 | C3; thioester, immune defense, immune system; HET: | 100.0 | |
| 3cu7_A | 1676 | Complement C5; Mg domain, inflammation, anaphylato | 100.0 | |
| 2hr0_B | 915 | Complement C3 alpha' chain; complement component C | 100.0 | |
| 2pn5_A | 1325 | TEP1R, thioester-containing protein I; FULL-length | 100.0 | |
| 4fxk_B | 767 | Complement C4-A alpha chain; immune system, proteo | 100.0 | |
| 1hzf_A | 367 | Complement factor C4A; alpha-alpha 6 barrel, immun | 100.0 | |
| 2wy7_A | 310 | Complement C3D fragment; immune system, immune res | 100.0 | |
| 3hrz_C | 379 | Cobra venom factor; serine protease, glycosilated, | 100.0 | |
| 1qqf_A | 277 | Protein (complement C3DG); alpha-alpha barrel, imm | 100.0 | |
| 1edy_A | 134 | Alpha 1-macroglobulin; beta sandwich, pseudo-symme | 99.96 | |
| 1ayo_A | 130 | Alpha-2-macroglobulin; receptor binding domain; HE | 99.96 | |
| 4fxk_C | 291 | Complement C4 gamma chain; immune system, proteoly | 99.95 | |
| 2sqc_A | 631 | Squalene-hopene cyclase; isomerase, triterpene cyc | 99.66 | |
| 1w6k_A | 732 | Lanosterol synthase; cyclase, cholesterol, monotop | 99.59 | |
| 3hrz_B | 252 | Cobra venom factor; serine protease, glycosilated, | 99.52 | |
| 2wy7_A | 310 | Complement C3D fragment; immune system, immune res | 98.44 | |
| 1qqf_A | 277 | Protein (complement C3DG); alpha-alpha barrel, imm | 98.38 | |
| 1w6k_A | 732 | Lanosterol synthase; cyclase, cholesterol, monotop | 98.3 | |
| 2sqc_A | 631 | Squalene-hopene cyclase; isomerase, triterpene cyc | 98.27 | |
| 4acq_A | 1451 | Alpha-2-macroglobulin; hydrolase inhibitor, protei | 98.25 | |
| 3es6_B | 118 | Prolactin-inducible protein; major histocompatibil | 98.21 | |
| 3dss_B | 331 | Geranylgeranyl transferase type-2 subunit beta; pr | 98.21 | |
| 2hr0_B | 915 | Complement C3 alpha' chain; complement component C | 98.2 | |
| 2h6f_B | 437 | Protein farnesyltransferase beta subunit; ftase, f | 98.19 | |
| 3dss_B | 331 | Geranylgeranyl transferase type-2 subunit beta; pr | 98.15 | |
| 2b39_A | 1661 | C3; thioester, immune defense, immune system; HET: | 98.01 | |
| 1hzf_A | 367 | Complement factor C4A; alpha-alpha 6 barrel, immun | 97.99 | |
| 2pn5_A | 1325 | TEP1R, thioester-containing protein I; FULL-length | 97.95 | |
| 3cu7_A | 1676 | Complement C5; Mg domain, inflammation, anaphylato | 97.76 | |
| 4fxk_B | 767 | Complement C4-A alpha chain; immune system, proteo | 97.48 | |
| 2h6f_B | 437 | Protein farnesyltransferase beta subunit; ftase, f | 97.43 | |
| 2bb6_A | 414 | TCII, TC II, transcobalamin II; alpha_6 - alpha_6 | 97.25 | |
| 2pmv_A | 399 | Gastric intrinsic factor; cobalamin transport prot | 97.14 | |
| 2icn_B | 118 | Prolactin-inducible protein; beta-pleated sheet, c | 97.12 | |
| 1n4q_B | 377 | Geranyltransferase type-I beta subunit; protein ge | 96.8 | |
| 3q7a_B | 520 | Farnesyltransferase beta subunit; protein prenyltr | 96.69 | |
| 1n4q_B | 377 | Geranyltransferase type-I beta subunit; protein ge | 96.46 | |
| 3prx_B | 1642 | Cobra venom factor; immune system, complement, imm | 95.74 | |
| 1r76_A | 408 | Pectate lyase; A-helical structure; 2.65A {Azospir | 93.76 | |
| 2bb6_A | 414 | TCII, TC II, transcobalamin II; alpha_6 - alpha_6 | 90.85 | |
| 1gxm_A | 332 | Pectate lyase; mechanism, elimination; 1.32A {Cell | 90.73 | |
| 3q7a_B | 520 | Farnesyltransferase beta subunit; protein prenyltr | 88.17 | |
| 3dra_B | 390 | Geranylgeranyltransferase type I beta subunit; ger | 85.77 | |
| 3dra_B | 390 | Geranylgeranyltransferase type I beta subunit; ger | 84.82 |
| >3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-96 Score=922.30 Aligned_cols=567 Identities=20% Similarity=0.330 Sum_probs=287.8
Q ss_pred eccceeEeeeeeEEEE-----EEEEEEeeCCCEEEEeccCCCccceeeEEeeCCcccccccccEEEEEEEEecceeeEEE
Q psy742 14 LAGQENMQSTIRSFAV-----SLSAEMAPSATIVVYNVGRNGDVIADSLTFPVNGISRNNVNATVVFLPIVPVHLGDIDV 88 (713)
Q Consensus 14 l~~~~~~~~~~~~f~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~F~I~p~~lG~i~I 88 (713)
+..||.+++++++|.. +|+|+|..++++|+.+.. +....|+++++.++ +++|+|+|+|+++|+++|
T Consensus 824 v~rGEq~~l~v~VfNy~~~~~~V~V~L~~s~~~~~~~~~--~~~~~q~v~v~a~~-------~~~v~f~i~p~~~G~~~i 894 (1642)
T 3prx_B 824 VVKNEQVEIRAILHNYVNEDIYVRVELLYNPAFCSASTK--GQRYRQQFPIKALS-------SRAVPFVIVPLEQGLHDV 894 (1642)
T ss_dssp EETTCCEEEEEEEEECSSSCEEEEEEECCCTTEEESCCS--SSCCEEEEEECSSE-------EEEEEEEEEECSCEEEEE
T ss_pred EecCCEEEEEEEEEcCCCCcEEEEEEEEcCCCeEeeccC--CCcceeEEEECCCC-------eEEEEEEEEEeecccEEE
Confidence 4589999999999987 899999999999997642 23367899999998 999999999999999999
Q ss_pred EEEEEec--CCCceEEEEEEEecCCeEEEEeEeeeeecccc---cceeeeeeeccCCCCccCCCCc--eEEEEecC----
Q psy742 89 TVTASSL--IGRDTVTRKLHIIADGLPQHRHQSILLDLSNR---AYVFQYLHVNVTETPIIPYDVD--RYYVYGSS---- 157 (713)
Q Consensus 89 ~V~A~s~--~~sD~V~~~L~V~peGv~~~~~~s~~ld~~~~---~~~~~~~~~~~p~~~~ip~s~~--~~~v~Gs~---- 157 (713)
+|+|.+. ..+|+|+++|+|+|||++++.+++.+|||++. ......+.+.+|.+ .+|++.. .++|.|+.
T Consensus 895 ~v~A~~~~~~~~D~v~k~L~V~peg~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~p~~-~vpgS~~~~~vsv~gd~lg~~ 973 (1642)
T 3prx_B 895 EIKASVQEALWSDGVRKKLKVVPEGVQKSIVTIVKLDPRAKGVGGTQLEVIKARKLDD-RVPDTEIETKIIIQGDPVAQI 973 (1642)
T ss_dssp EEEEEESSSSCEEEEEEEEEEECSSEEEEEEEEEEECTTTTCSSSEEEEEECCCCCCS-BCTTCCEEEEEEEEEEC----
T ss_pred EEEEEecCCCccceEEEEEEEecCCccEEEEEEEEEcCCcccCCcceeEEEecccccc-cCCCCcccEEEEEEcccchhh
Confidence 9999874 48899999999999999999999999999742 11233455666765 7899853 46777654
Q ss_pred -------CCccccccccch-------------------------------------------------------------
Q psy742 158 -------INSSSISTLKML------------------------------------------------------------- 169 (713)
Q Consensus 158 -------~~l~sLi~~P~g------------------------------------------------------------- 169 (713)
++|++||+||||
T Consensus 974 i~~~l~~~~L~~Ll~~PyGCgEQnms~~~P~v~v~~yL~~t~q~~~~~~e~~~ka~~~i~~Gyqr~l~yq~~DGsfs~w~ 1053 (1642)
T 3prx_B 974 IENSIDGSKLNHLIITPSGCGEQNMIRMAAPVIATYYLDTTEQWETLGINRRTEAVNQIVTGYAQQMVYKKADHSYAAFT 1053 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhcccchhhHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhhccccccChhHHHHHHHHHHHHHHHHHHhcCCCCCeecCC
Confidence 489999999998
Q ss_pred -----hhhhhhHH---hhhhhcc-C-CCHHHHHHHHHHHHh-ccCCCcceeeccccccccccccCCCCCCCcccCcceeh
Q psy742 170 -----LWYSCLLC---LYIWETL-M-LPLQVITQAVSWVLD-HQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLT 238 (713)
Q Consensus 170 -----tWL~TAfV---F~qa~~~-~-ID~~~I~~ai~WL~~-~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LT 238 (713)
+|| |||| |.+|+++ + ||+++|+++++||.+ +|++||||.|.|+++|++|+||+.| .+++++||
T Consensus 1054 ~~~~stWL-TAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~~m~Gg~~~-----~~~~~~lT 1127 (1642)
T 3prx_B 1054 NRASSSWL-TAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKENAPVLSGTMQGGIQG-----AEEEVYLT 1127 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcccc-HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccccccccchhccCCccC-----CCCcccch
Confidence 999 9999 9999999 8 999999999999997 8999999999999999999987754 24579999
Q ss_pred HHHHHHHHhcccccCCCCCchhHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHhcCCccHHHHHHHHHHhhhccCCc
Q psy742 239 AHVLITLDTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGILTQHARSEGGL 318 (713)
Q Consensus 239 AyVliaL~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~~~~~~~~YtlAl~aYALaLa~~~~~~~al~~L~~~a~~~~~~ 318 (713)
|||++||+|++.++.+.......+++||+.||+++++.+. ++|++||+||||+|+++++ ..++++|.+. +.
T Consensus 1128 A~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~~~~~~---~~Y~~Ai~aYAl~l~~~~~-~~~l~~l~~~-----~~ 1198 (1642)
T 3prx_B 1128 AFILVALLESKTICNDYVNSLDSSIKKATNYLLKKYEKLQ---RPYTTALTAYALAAADQLN-DDRVLMAAST-----GR 1198 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHHHHHHhhhcCC---CHHHHHHHHHHHHhcCCch-HHHHHHHHhc-----CC
Confidence 9999999999876544333345689999999999998877 9999999999999999875 3566666543 46
Q ss_pred eeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc-chhHHHHHHHhcccCCCCccchhhHHHH
Q psy742 319 TYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL-LTDPIVKWLNSQRLTDGGWASTQDTAMA 397 (713)
Q Consensus 319 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~-~a~~Iv~WL~~Qrn~~GGF~STQDTvvA 397 (713)
.||.... ..+.+||||||||||++.++++ .+.|||+||++|||++|||+||||||+|
T Consensus 1199 ~~W~~~~----------------------~~~~~VE~TaYaLLa~l~~~~~~~a~~iv~WL~~qr~~~Ggf~STQdTvva 1256 (1642)
T 3prx_B 1199 DHWEEYN----------------------AHTHNIEGTSYALLALLKMKKFDQTGPIVRWLTDQNFYGETYGQTQATVMA 1256 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCC----------------------CchHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcccCcHHHHHH
Confidence 8996531 1368999999999999999998 9999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCcceeEEEEEEecCCCceeEEEEeccCcceeEeEEecCCCceEEEEEEeeeEEEEEEEEEEeeccc
Q psy742 398 MKALIEYTNRHRLRDVSYLTVSIEATALPGQVKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDIA 477 (713)
Q Consensus 398 LqALa~Ya~~~~~~~~~~l~v~V~~~~~~~~~~~~~I~~~N~~~~q~~~lp~~~g~v~v~a~G~G~a~~q~~~~Yn~~~~ 477 (713)
||||++|+.+....+..+++|+|...+. +..++|+||.+|++++|+.+| +.+++++|+++|+||+++|+.++||+...
T Consensus 1257 LqALa~Y~~~~~~~~~~~~~V~v~~~~~-~~~~~~~v~~~N~~l~q~~~l-~~~~~~~v~a~G~G~~~~q~~~~Yn~~~~ 1334 (1642)
T 3prx_B 1257 FQALAEYEIQMPTHKDLNLDITIELPDR-EVPIRYRINYENALLARTVET-KLNQDITVTASGDGKATMTILTFYNAQLQ 1334 (1642)
T ss_dssp --------------CCCCEEEEEECTTC-SSCEEEEESTTTSSCCEEEEE-SSCCCEEEEEEESSEEEEEEEEEEEECC-
T ss_pred HHHHHHHHHhcCcCCCccEEEEEEeCCC-CccEEEEECCcccceeEEEEc-cCCCeEEEEEEeeeEEEEEEEEEEeccCc
Confidence 9999999998764233577888775422 245689999999999999999 47899999999999999999999998543
Q ss_pred cccCCCCCCCeeEEEEeecc----CCCCceeEEEEEEEeeccCCCCccceEEEEEecCcceeecccchHHHhccCCCCcc
Q psy742 478 KFQTQPPVPAFALNTRANFH----GRNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQKLDAYIRTRNVPNL 553 (713)
Q Consensus 478 ~~~~~~~~~~F~L~v~~~~~----~~~~~~~~l~vC~~~~~~~~~~~s~MaiveV~lpSGf~~~~~~L~~l~~~~~~~~i 553 (713)
+ .+..++.|+|+|++... +....++.++||++|++. ..+|||||||+|||||+++.++|++|.. ...+.|
T Consensus 1335 ~--~~~~~~~F~L~v~~~~~~~~~~~~~~~~~l~vc~~y~~~---~~s~Mai~dV~l~SGf~~~~~~l~~L~~-~~~~~i 1408 (1642)
T 3prx_B 1335 E--KANVCNKFHLNVSVENIHLNAMGAKGALMLKICTRYLGE---VDSTMTIIDISMLTGFLPDAEDLTRLSK-GVDRYI 1408 (1642)
T ss_dssp ------CCCSEEEEEEEECCCC-----CCEEEEEEEEEECSS---SCEEEEEEEEECCTTEEEBHHHHHHHHC-SSSEEC
T ss_pred c--ccCCCCCEEEEEEecccccCCcccccEEEEEEEEEecCC---CCCccEEEEEecCccceechhhHHHHhh-ccccce
Confidence 2 12346789999987542 123568999999999863 4689999999999999999999999974 334578
Q ss_pred eeEEEe-----CCEEEEEEecCCC-ceeEEEEEEEEEeeeeccccceeEEEEeccCCCceeEEEeecCc--cccccccc-
Q psy742 554 QRARFQ-----EQKVLFYFDYLDD-TETCINFTIERWFPVANMSRYLPIRVYDYYAPERFNETIFDALP--TYLLNICE- 624 (713)
Q Consensus 554 ~~~E~~-----d~~V~lYfd~l~~-~~~cv~f~~~~~~~V~~~~~pa~v~VYDYY~P~~~~~~~y~~~~--~~~~~~C~- 624 (713)
+|||++ +++|+||||++++ ++.||+|+++|+|+|+++ |||+|+|||||+|+++|.++|+... ..++++|+
T Consensus 1409 ~~~E~~~~~~~~~~vilYld~v~~~~~~c~~f~~~q~~~V~~~-qpa~v~vYDYY~p~~~~~~~Y~~~~~~~~l~~lC~~ 1487 (1642)
T 3prx_B 1409 SRYEVDNNMAQKVAVIIYLNKVSHSEDECLHFKILKHFEVGFI-QPGSVKVYSYYNLDEKCTKFYHPDKGTGLLNKICIG 1487 (1642)
T ss_dssp CCCCEETTEESCSEEEEEEEEECSSSCEEEEEEEEESCCCSSC-CCEEEEEEETTEEEEEEEEEEBTTBSSCCCCCEEET
T ss_pred eEEEeeccccCCCEEEEEEccCCCCCceEEEEEEEEEEEeccc-cceEEEEEeccCCCcceEEEEcCCcCcchHHhhcCC
Confidence 999997 8899999999997 579999999999999999 6999999999999999999998643 35788886
Q ss_pred ---ccCCCCCCCCCC
Q psy742 625 ---VCGSSQCPYCPI 636 (713)
Q Consensus 625 ---~C~~~~C~~c~~ 636 (713)
.|+++.|+.|..
T Consensus 1488 ~~C~Cae~~C~~~~~ 1502 (1642)
T 3prx_B 1488 NVCRCAGETCSSLNH 1502 (1642)
T ss_dssp TEEECCCSSCCCCCC
T ss_pred CeeEeeccCCCcccc
Confidence 378889988776
|
| >4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} | Back alignment and structure |
|---|
| >3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A | Back alignment and structure |
|---|
| >2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... | Back alignment and structure |
|---|
| >2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* | Back alignment and structure |
|---|
| >1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 | Back alignment and structure |
|---|
| >2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A | Back alignment and structure |
|---|
| >3hrz_C Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_B* 3hs0_C* | Back alignment and structure |
|---|
| >1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A | Back alignment and structure |
|---|
| >1edy_A Alpha 1-macroglobulin; beta sandwich, pseudo-symmetric dimer, protein binding; 2.30A {Rattus norvegicus} SCOP: b.2.4.1 | Back alignment and structure |
|---|
| >1ayo_A Alpha-2-macroglobulin; receptor binding domain; HET: NAG; 1.90A {Bos taurus} SCOP: b.2.4.1 PDB: 1bv8_A | Back alignment and structure |
|---|
| >4fxk_C Complement C4 gamma chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_C* | Back alignment and structure |
|---|
| >2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* | Back alignment and structure |
|---|
| >1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* | Back alignment and structure |
|---|
| >3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B* | Back alignment and structure |
|---|
| >2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A | Back alignment and structure |
|---|
| >1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A | Back alignment and structure |
|---|
| >1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* | Back alignment and structure |
|---|
| >2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* | Back alignment and structure |
|---|
| >4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
| >3es6_B Prolactin-inducible protein; major histocompatibility complex, protein-protein complex, P inducible protein, zinc 2-glycoprotein, ZAG-PIP complex; HET: NDG NAG BMA MAN P6G; 3.23A {Homo sapiens} SCOP: b.1.18.23 | Back alignment and structure |
|---|
| >3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* | Back alignment and structure |
|---|
| >2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... | Back alignment and structure |
|---|
| >2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... | Back alignment and structure |
|---|
| >3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* | Back alignment and structure |
|---|
| >2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} | Back alignment and structure |
|---|
| >1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 | Back alignment and structure |
|---|
| >2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A | Back alignment and structure |
|---|
| >4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* | Back alignment and structure |
|---|
| >2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... | Back alignment and structure |
|---|
| >2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* | Back alignment and structure |
|---|
| >2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* | Back alignment and structure |
|---|
| >1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* | Back alignment and structure |
|---|
| >3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* | Back alignment and structure |
|---|
| >1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* | Back alignment and structure |
|---|
| >3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* | Back alignment and structure |
|---|
| >1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 | Back alignment and structure |
|---|
| >2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* | Back alignment and structure |
|---|
| >1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* | Back alignment and structure |
|---|
| >3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* | Back alignment and structure |
|---|
| >3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
| >3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 713 | ||||
| d1hzfa_ | 326 | a.102.4.4 (A:) C4adg fragment of complement factor | 2e-35 | |
| d1c3da_ | 294 | a.102.4.4 (A:) C3D, a C3 fragment and ligand for c | 2e-28 | |
| d1ayoa_ | 130 | b.2.4.1 (A:) alpha-2-macroglobulin {Cow (Bos tauru | 2e-24 | |
| d1edya_ | 134 | b.2.4.1 (A:) alpha-1-macroglobulin {Rat (Rattus no | 3e-24 | |
| d1w6ka1 | 448 | a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase { | 4e-05 | |
| d2sqca1 | 352 | a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cycla | 0.002 |
| >d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Length = 326 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Terpenoid cyclases/Protein prenyltransferases family: Complement components domain: C4adg fragment of complement factor C4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 134 bits (338), Expect = 2e-35
Identities = 66/225 (29%), Positives = 94/225 (41%), Gaps = 16/225 (7%)
Query: 189 QVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTV 248
+ + + +W+L Q DGSF + ++DR + L ++ ++LTA V I L
Sbjct: 103 EKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDET-----VALTAFVTIALHHG 157
Query: 249 KDLTGGLGA-----RVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKA--TIA 301
+ GA RV + SKA +L + AI AYAL L+KA +
Sbjct: 158 LAVFQDEGAEPLKQRVEASISKASSFLGEKAS--AGLLGAHAAAITAYALTLTKAPADLR 215
Query: 302 EAAFGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALL 361
A L A+ G YWG + P + A+ IETTAYALL
Sbjct: 216 GVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALL 275
Query: 362 VYVSRQELLT--DPIVKWLNSQRLTDGGWASTQDTAMAMKALIEY 404
+ + D WL Q GG+ STQDT +A+ AL Y
Sbjct: 276 HLLLHEGKAEMADQASAWLTRQGSFQGGFRSTQDTVIALDALSAY 320
|
| >d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
| >d1ayoa_ b.2.4.1 (A:) alpha-2-macroglobulin {Cow (Bos taurus) [TaxId: 9913]} Length = 130 | Back information, alignment and structure |
|---|
| >d1edya_ b.2.4.1 (A:) alpha-1-macroglobulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 134 | Back information, alignment and structure |
|---|
| >d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448 | Back information, alignment and structure |
|---|
| >d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 352 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 713 | |||
| d1hzfa_ | 326 | C4adg fragment of complement factor C4a {Human (Ho | 100.0 | |
| d1c3da_ | 294 | C3D, a C3 fragment and ligand for complement recep | 99.97 | |
| d1edya_ | 134 | alpha-1-macroglobulin {Rat (Rattus norvegicus) [Ta | 99.96 | |
| d1ayoa_ | 130 | alpha-2-macroglobulin {Cow (Bos taurus) [TaxId: 99 | 99.96 | |
| d1w6ka1 | 448 | Lanosterol synthase {Human (Homo sapiens) [TaxId: | 99.09 | |
| d2sqca1 | 352 | Squalene-hopene cyclase {Alicyclobacillus acidocal | 99.02 | |
| d2sqca1 | 352 | Squalene-hopene cyclase {Alicyclobacillus acidocal | 98.84 | |
| d1w6ka1 | 448 | Lanosterol synthase {Human (Homo sapiens) [TaxId: | 98.15 | |
| d3es6b1 | 118 | Prolactin-inducible protein, PIP {Human (Homo sapi | 97.99 | |
| d1c3da_ | 294 | C3D, a C3 fragment and ligand for complement recep | 97.97 | |
| d1hzfa_ | 326 | C4adg fragment of complement factor C4a {Human (Ho | 97.92 | |
| d2sqca2 | 271 | Squalene-hopene cyclase {Alicyclobacillus acidocal | 97.78 | |
| d3dssb1 | 325 | Rab geranylgeranyltransferase, beta subunit {Rat ( | 97.64 | |
| d3dssb1 | 325 | Rab geranylgeranyltransferase, beta subunit {Rat ( | 96.89 | |
| d2h6fb1 | 401 | Protein farnesyltransferase, beta-subunit {Human ( | 96.51 | |
| d1w6ka2 | 279 | Lanosterol synthase {Human (Homo sapiens) [TaxId: | 94.52 | |
| d1n4qb_ | 346 | Protein farnesyltransferase, beta-subunit {Rat (Ra | 94.09 | |
| d2sqca2 | 271 | Squalene-hopene cyclase {Alicyclobacillus acidocal | 92.49 | |
| d1n4qb_ | 346 | Protein farnesyltransferase, beta-subunit {Rat (Ra | 92.44 | |
| d1r76a_ | 408 | Polygalacturonic acid lyase (pectate lyase) {Azosp | 89.84 | |
| d2h6fb1 | 401 | Protein farnesyltransferase, beta-subunit {Human ( | 86.6 |
| >d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Terpenoid cyclases/Protein prenyltransferases family: Complement components domain: C4adg fragment of complement factor C4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-36 Score=324.06 Aligned_cols=231 Identities=29% Similarity=0.364 Sum_probs=177.9
Q ss_pred hhhhhhHH---hhhhhcc-CCCHHHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHH
Q psy742 170 LWYSCLLC---LYIWETL-MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITL 245 (713)
Q Consensus 170 tWL~TAfV---F~qa~~~-~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL 245 (713)
+|| |||| |.+|+++ ++|++.+++++.|++++|..+|+|.+.++++|..++++..+ ....+.+||||+++|
T Consensus 81 ~wl-Tayv~~~L~~A~~~g~~~~~~~~~~~~~~l~~q~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~tAyvl~aL 154 (326)
T d1hzfa_ 81 TWL-TAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVG-----NDETVALTAFVTIAL 154 (326)
T ss_dssp HHH-HHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGGGGGSS-----TTHHHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHHHHhcccchhhHHhHHHHHHHHhhhcccccccccccCHHHhccccc-----cccchhHHHHHHHHH
Confidence 999 9999 8999999 99999999999999999999999999999999999876543 245688999999999
Q ss_pred HhcccccCCCC-----CchhHHHHHHHHHHHHhhhh-ccCCCChHHHHHHHHHHHhcCCccH--HHHHHHHHHhhhccCC
Q psy742 246 DTVKDLTGGLG-----ARVSLAQSKAIKWLERNLRL-LKDFGDPYEVAIVAYALRLSKATIA--EAAFGILTQHARSEGG 317 (713)
Q Consensus 246 ~ea~~l~~g~~-----~~~~~~~~kA~~yLe~~~~~-~~~~~~~YtlAl~aYALaLa~~~~~--~~al~~L~~~a~~~~~ 317 (713)
.+++....+.. .++..++.||++||+++... +. ++|++|+++|||+++++.+. ..++++|++.+..+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~i~kA~~~l~~~~~~~~~---~~y~~a~~a~al~~~~~~~~~~~~~~~~l~~~a~~~~~ 231 (326)
T d1hzfa_ 155 HHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLL---GAHAAAITAYALTLTKAPADLRGVAHNNLMAMAQETGD 231 (326)
T ss_dssp HHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCC---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCEECSS
T ss_pred HHcccccccchhhhhHhhHHHHHHHHHHHHHHHhhcccC---CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhccc
Confidence 99875332221 12345689999999998753 45 99999999999999998763 4567788888888888
Q ss_pred ceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCC-c-chhHHHHHHHhcccCCCCccchhhHH
Q psy742 318 LTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQE-L-LTDPIVKWLNSQRLTDGGWASTQDTA 395 (713)
Q Consensus 318 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~-~-~a~~Iv~WL~~Qrn~~GGF~STQDTv 395 (713)
..||..............+..+..++..++..+.+|||||||||+++..+. . .+.++++||.+||+.+|||.|||||+
T Consensus 232 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~iettayaLla~~~~~~~~~~~~~~~~WL~~qr~~~Ggw~STQdT~ 311 (326)
T d1hzfa_ 232 NLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEGKAEMADQASAWLTRQGSFQGGFRSTQDTV 311 (326)
T ss_dssp CEECC------------------------CCCHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTSTTCSCSHHHHH
T ss_pred cceecccccccccccccccccccCCCCCcccchHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhccCCCCCccHHHHH
Confidence 899976442211111111111111122223467899999999999998754 4 88999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q psy742 396 MAMKALIEYTNRHR 409 (713)
Q Consensus 396 vALqALa~Ya~~~~ 409 (713)
+||+||++|+.+++
T Consensus 312 ~al~AL~~y~~~~~ 325 (326)
T d1hzfa_ 312 IALDALSAYWIASH 325 (326)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998764
|
| >d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1edya_ b.2.4.1 (A:) alpha-1-macroglobulin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1ayoa_ b.2.4.1 (A:) alpha-2-macroglobulin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
| >d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
| >d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3es6b1 b.1.18.23 (B:1-118) Prolactin-inducible protein, PIP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
| >d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
| >d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} | Back information, alignment and structure |
|---|
| >d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|